BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F
[Candidatus Liberibacter asiaticus str. psy62]
         (425 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040535|gb|ACT57331.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 425

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/425 (100%), Positives = 425/425 (100%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF
Sbjct: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC
Sbjct: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG
Sbjct: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH
Sbjct: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420

Query: 421 RCNFQ 425
           RCNFQ
Sbjct: 421 RCNFQ 425


>gi|315122721|ref|YP_004063210.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496123|gb|ADR52722.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 424

 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/424 (90%), Positives = 401/424 (94%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYGL+GKSL +SM+RGHWD  D IL KGRDWII+EVKASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGLKGKSLDESMARGHWDGTDNILGKGRDWIISEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK CSDRPHYLVVNADESEPGTCKDRDIMRHEPH LIEGCVIASFAIGAHC
Sbjct: 61  STGMKWSFMPKTCSDRPHYLVVNADESEPGTCKDRDIMRHEPHVLIEGCVIASFAIGAHC 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            FIYVRGEFIRERESLQ AVDECYA GLLG NSKLGYDVDIIVHHGAGAYICGEETALLE
Sbjct: 121 VFIYVRGEFIRERESLQTAVDECYARGLLGRNSKLGYDVDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAVVPTILRRGASWYS FGRENNRGTK
Sbjct: 181 SLEGKKGLPRLKPPFPANMGLYGCPTTVNNVESIAVVPTILRRGASWYSSFGRENNRGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL   QMRG
Sbjct: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLTGDQMRG 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMDYD LK MGSGLGTAAVIVMDRSTDII+AIWRLSVFYKHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDYDSLKAMGSGLGTAAVIVMDRSTDIIRAIWRLSVFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER+V+G+AQK EID+L+EVSKNIEGRTICALGDAAAWPIQGLIKNFR ++EERIDQY+
Sbjct: 361 LMERMVRGVAQKHEIDMLFEVSKNIEGRTICALGDAAAWPIQGLIKNFRHVMEERIDQYN 420

Query: 421 RCNF 424
             +F
Sbjct: 421 VHHF 424


>gi|150396117|ref|YP_001326584.1| NADH dehydrogenase I subunit F [Sinorhizobium medicae WSM419]
 gi|150027632|gb|ABR59749.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium medicae
           WSM419]
          Length = 434

 Score =  753 bits (1945), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/421 (83%), Positives = 386/421 (91%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL  KSL  +M+RGHWD   + LEKGRDWIINEVKASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNIYGLMDKSLKGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQAA+DECYA GLLG N+KLGYD+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQAAIDECYAYGLLGKNNKLGYDIDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WY+ FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNNHGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGHVN PCTVE++MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+P  QM+ 
Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y 
Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|15965023|ref|NP_385376.1| NADH dehydrogenase I subunit F [Sinorhizobium meliloti 1021]
 gi|307301095|ref|ZP_07580864.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           BL225C]
 gi|307317829|ref|ZP_07597267.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           AK83]
 gi|7387963|sp|P56912|NUOF1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit F 1; AltName:
           Full=NADH dehydrogenase I subunit F 1; AltName:
           Full=NDH-1 subunit F 1
 gi|5650740|emb|CAB51626.1| nuoF1 [Sinorhizobium meliloti]
 gi|15074202|emb|CAC45849.1| NADH-quinone oxidoreductase subunit F 1 [Sinorhizobium meliloti
           1021]
 gi|306896591|gb|EFN27339.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           AK83]
 gi|306904050|gb|EFN34636.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           BL225C]
          Length = 434

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/421 (83%), Positives = 386/421 (91%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +M+RGHWD   + LEKGRDWIINEVKASGLRGRGGAGF
Sbjct: 1   MLRDEDRIFTNIYGLKDKSLRGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQAA+DECY  GLLG N+KLGYD+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQAAIDECYEYGLLGKNNKLGYDIDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WY+ FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNNHGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGHVN PCTVE++MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+P  QM+ 
Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y 
Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|227821623|ref|YP_002825593.1| NADH dehydrogenase I subunit F [Sinorhizobium fredii NGR234]
 gi|227340622|gb|ACP24840.1| NADH-quinone oxidoreductase chain F 1 [Sinorhizobium fredii NGR234]
          Length = 434

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/421 (82%), Positives = 385/421 (91%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +M+RGHWD    +LEKGRDWIINEVKASGLRGRGGAGF
Sbjct: 1   MLRDEDRIFTNIYGLKDKSLKGAMARGHWDGTKALLEKGRDWIINEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMAANT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQAA+DECY  GLLG N+KLGYD+D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQAAIDECYEYGLLGKNNKLGYDIDVFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WYS FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYSSFGRPNNHGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGHVN PCTVE++MSI F ELI+KHCGGIRGGWDNLLAVIPGGSSVPC+P  QM+ 
Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIDKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y 
Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEQRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|163759536|ref|ZP_02166621.1| nadh dehydrogenase i chain f transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162283133|gb|EDQ33419.1| nadh dehydrogenase i chain f transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 435

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/425 (78%), Positives = 375/425 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG+  KSL  +M+RGHWD    ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGVYDKSLKGAMARGHWDGTKGILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+NADESEPGTCKDRDIMRH+PHTLIEGCVIA FA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVINADESEPGTCKDRDIMRHDPHTLIEGCVIAGFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IYVRGE++RERE+LQAA+DECY +GLLG NSKLGYD+D+ VHHGAGAYICGEETALLE
Sbjct: 121 TYIYVRGEYMREREALQAAIDECYEAGLLGKNSKLGYDMDVYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGIGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE+MSI F ELI+ HCGGIRGGWDNLLAVIPGGSSVP +P   +  
Sbjct: 241 LFCVSGHVNTPCTVEEAMSIPFRELIDTHCGGIRGGWDNLLAVIPGGSSVPLVPGADIVD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+++ SGLGTAAVIVMD+STD++KAIWRLS FYKHESCGQCTPCREGTGWMMR
Sbjct: 301 TPMDFDSLRDLKSGLGTAAVIVMDKSTDVVKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM+R+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI++FRP +E RIDQY 
Sbjct: 361 VMDRMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEMEARIDQYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|110633381|ref|YP_673589.1| NADH dehydrogenase I subunit F [Mesorhizobium sp. BNC1]
 gi|110284365|gb|ABG62424.1| NADH dehydrogenase subunit F [Chelativorans sp. BNC1]
          Length = 434

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/421 (79%), Positives = 375/421 (89%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG   +SL  +M+RGHWD    ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGQFDRSLHGAMARGHWDGTKAILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  +DRPHYLVVNADESEPGTCKDRDI+RHEPHTL+EGC+IA FA+GAH 
Sbjct: 61  PTGLKWSFMPKAPTDRPHYLVVNADESEPGTCKDRDILRHEPHTLVEGCLIAGFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQAA+DECYA GLLG N+  G+D D+IVHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQAAIDECYAHGLLGKNNIHGWDFDVIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FGRENN+GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRENNKGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+  
Sbjct: 241 LFCISGHVNNPCTVEEEMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+++ SGLGTAAVIVMD+STDI+KAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDSLRDLKSGLGTAAVIVMDKSTDIVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLV+G A K EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP IE RID++ 
Sbjct: 361 VMERLVRGEAHKHEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIDEFT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|116251471|ref|YP_767309.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241204092|ref|YP_002975188.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115256119|emb|CAK07200.1| putative NADH-quinone oxidoreductase subunit F [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240857982|gb|ACS55649.1| NADH-quinone oxidoreductase, F subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 434

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/419 (78%), Positives = 370/419 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA  +  
Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+ +GS  GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY
Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419


>gi|222148279|ref|YP_002549236.1| NADH dehydrogenase I subunit F [Agrobacterium vitis S4]
 gi|221735267|gb|ACM36230.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4]
          Length = 434

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/421 (78%), Positives = 370/421 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PHTL+EGCVIA FA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREIMRHDPHTLLEGCVIAGFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE++RERE+LQAA+DECY  GLLG N+KLG+D DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYMREREALQAAIDECYEYGLLGKNNKLGWDYDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSFGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE+M ITF ELIE+H GGIRGGWDNLLAVIPGG+S P + A  +  
Sbjct: 241 LFMISGHVNKPCTVEETMGITFRELIERHAGGIRGGWDNLLAVIPGGASCPVVKAEDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+++ S  GTAA+IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 VPMDFDGLRDVKSSFGTAAIIVMDKSTDIIKAIARLSQFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE RID Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEARIDDYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|209548868|ref|YP_002280785.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534624|gb|ACI54559.1| NADH-quinone oxidoreductase, F subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 434

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/419 (78%), Positives = 370/419 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA  +  
Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+ +GS  GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY
Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419


>gi|222085581|ref|YP_002544111.1| NADH-quinone oxidoreductase, F subunit [Agrobacterium radiobacter
           K84]
 gi|221723029|gb|ACM26185.1| NADH-quinone oxidoreductase, F subunit [Agrobacterium radiobacter
           K84]
          Length = 434

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/419 (78%), Positives = 370/419 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG + KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDQDRIFTNIYGHKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIA FA+GA+ 
Sbjct: 61  PTGLKWSFMPKENDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIAGFAMGANT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE++RERE+LQAA+DECY +GLLG N+KLG+D D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKLGWDYDVYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSFGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE+M ITF EL++KH GGIRGGWDNLLAVIPGG+S P +PA  +  
Sbjct: 241 LFMLSGHVNRPCTVEETMGITFRELVDKHAGGIRGGWDNLLAVIPGGASCPIVPAADIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+E+ S  GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 CPMDFDGLREVKSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY
Sbjct: 361 VLERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419


>gi|190891291|ref|YP_001977833.1| NADH-ubiquinone oxidoreductase, chain F [Rhizobium etli CIAT 652]
 gi|190696570|gb|ACE90655.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli
           CIAT 652]
          Length = 434

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/419 (78%), Positives = 370/419 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA  +  
Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+ +GS  GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY
Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419


>gi|86357243|ref|YP_469135.1| NADH dehydrogenase I subunit F [Rhizobium etli CFN 42]
 gi|86281345|gb|ABC90408.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN
           42]
          Length = 434

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/419 (78%), Positives = 370/419 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA  +  
Sbjct: 241 LFMLSGHVNRPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+ +GS  GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +MER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY
Sbjct: 361 LMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419


>gi|49474182|ref|YP_032224.1| NADH dehydrogenase I subunit F [Bartonella quintana str. Toulouse]
 gi|49239686|emb|CAF26061.1| NADH dehydrogenase I, F subunit [Bartonella quintana str. Toulouse]
          Length = 435

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/425 (76%), Positives = 370/425 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD +  I++KGRDWII+EVKASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGLKDKSLKAAMSRGHWDGIKAIIDKGRDWIIDEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC +A+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCALATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQAAVDECY +GLLG  +K G+  DII+HHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQAAVDECYDAGLLGKKTKYGHVCDIIIHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVG+YGCPTTVNNVESIAV+PTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGIYGCPTTVNNVESIAVIPTILRRGASWFSSIGRANNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWSNLLAVIPGGASCPVVRGEDMVD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  VIVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGVIVMDKSTDIIKAIWRITAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVS+ +EG TICALGDAAAWPIQGLI+NFRP IE RID Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSEQVEGHTICALGDAAAWPIQGLIRNFRPEIERRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RSVIQ 425


>gi|319898887|ref|YP_004158980.1| NADH dehydrogenase I chain F [Bartonella clarridgeiae 73]
 gi|319402851|emb|CBI76402.1| NADH dehydrogenase I chain F [Bartonella clarridgeiae 73]
          Length = 435

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/425 (76%), Positives = 368/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + KSL  +M RGHWDN   I+EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDKSLKGAMLRGHWDNTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQ A+DECY +GLLG  +K G+  DIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQVAIDECYEAGLLGKKTKYGHVCDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGWDNLLAVIPGG+S P +    M  
Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWDNLLAVIPGGASCPIVRGEDMID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT   IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDIGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR  IE+RID Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIEQRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RSAIQ 425


>gi|163868368|ref|YP_001609577.1| NADH dehydrogenase I subunit F [Bartonella tribocorum CIP 105476]
 gi|161018024|emb|CAK01582.1| NADH dehydrogenase I chain F [Bartonella tribocorum CIP 105476]
          Length = 435

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/425 (75%), Positives = 372/425 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           MLTD+DRIFTN+YGL+ KSL  +M RGHW+ + +I++KGRDWII+EVKASGLRGRGGAGF
Sbjct: 1   MLTDKDRIFTNIYGLKDKSLKAAMLRGHWNGLKEIIDKGRDWIIDEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC IA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCAIATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIY+RGE+IRERE+LQ AVDECY +GLLG  +K G+  DII+HHGAGAYICGEETALLE
Sbjct: 121 AFIYIRGEYIREREALQTAVDECYEAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMVD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  VIVMD++TDIIKAIWR+S F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGVIVMDKTTDIIKAIWRISAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFRP IE RID+Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRPEIERRIDEYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNVVQ 425


>gi|49475653|ref|YP_033694.1| NADH dehydrogenase I subunit F [Bartonella henselae str. Houston-1]
 gi|49238460|emb|CAF27688.1| NADH dehydrogenase I, F subunit [Bartonella henselae str.
           Houston-1]
          Length = 435

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/425 (75%), Positives = 371/425 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGL+ KSL  ++SRGHWD    I++KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNLYGLKDKSLKAAISRGHWDGTRAIIDKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCV+A+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVLATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIY+RGE+IRERE+LQAAVDECY +GLLG  +K G+  DII+HHGAGAYICGEETALLE
Sbjct: 121 AFIYIRGEYIREREALQAAVDECYDAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMVD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFRP IE RID Y 
Sbjct: 361 LLGRMVEGKAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRPEIERRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNVVQ 425


>gi|319408584|emb|CBI82239.1| NADH dehydrogenase I chain F [Bartonella schoenbuchensis R1]
          Length = 435

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/425 (75%), Positives = 370/425 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           MLTD+DRIFTN+YGL+ KSL  +M RGHWD    I+EKGRDWI++EVK SGLRGRGGAGF
Sbjct: 1   MLTDKDRIFTNIYGLKDKSLKGAMLRGHWDGTKAIVEKGRDWIVDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FAIGA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAIGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIY+RGE+IRERE+LQAA+DECY +GLLG  +K G+  DII+HHGAGAYICGEETALLE
Sbjct: 121 AFIYIRGEYIREREALQAAIDECYDAGLLGKKTKCGHVCDIIIHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPT VNNVESIAV+PTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTIVNNVESIAVIPTILRRGASWFSSIGRSNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++++GS  GT  VIVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AVMDFDGMRDVGSSFGTGGVIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFR  IE+RID Y 
Sbjct: 361 LLERMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRSEIEQRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNVVQ 425


>gi|304391405|ref|ZP_07373347.1| NADH oxidoreductase (quinone), f subunit [Ahrensia sp. R2A130]
 gi|303295634|gb|EFL89992.1| NADH oxidoreductase (quinone), f subunit [Ahrensia sp. R2A130]
          Length = 434

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/419 (77%), Positives = 367/419 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL  KSL  +MSRGHW    + +  GRDW+IN+ KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLHDKSLKGAMSRGHWSETKQFIANGRDWVINQTKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  S+RPHYLV+NADESEPGTCKDRDIMRH+PHTLIEGCV+A FA+GAH 
Sbjct: 61  PTGLKWSFMPKEESERPHYLVINADESEPGTCKDRDIMRHDPHTLIEGCVLAGFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IYVRGE++RERE+L+AA+DECY +GLLG N+K G+D DI V HGAGAYICGEETALLE
Sbjct: 121 CYIYVRGEYMREREALEAAIDECYEAGLLGKNNKNGWDYDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES+AVVPTILRRG  W++GFG ENNRGTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESVAVVPTILRRGPEWFAGFGAENNRGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PCTVEE+MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSV  +PA QM  
Sbjct: 241 LFCISGHVERPCTVEEAMSIPFRELIEKHCGGIRGGWDNLLAVIPGGSSVRMVPAEQMID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L ++ SGLGTAAVIVMD+ TDII+AI RL+ FYKHESCGQCTPCREGTGWM R
Sbjct: 301 TPMDFDSLSKLKSGLGTAAVIVMDKETDIIRAIARLAAFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+V+G AQKREID+L++V+K IEG TICALGDAAAWPIQGLI +FRP +E+RID+Y
Sbjct: 361 VMERMVEGRAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLITHFRPEMEKRIDEY 419


>gi|319405693|emb|CBI79316.1| NADH dehydrogenase I chain F [Bartonella sp. AR 15-3]
          Length = 435

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/425 (76%), Positives = 369/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  ++ RGHWD    I+EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGLKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQAA+DECY +GLLG  +K G+  DIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHVCDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPIVRGEDMIN 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT   IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR  IE+RID Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIEQRIDNYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RSAVQ 425


>gi|121601753|ref|YP_989075.1| NADH dehydrogenase I subunit F [Bartonella bacilliformis KC583]
 gi|120613930|gb|ABM44531.1| NADH dehydrogenase (quinone), F subunit [Bartonella bacilliformis
           KC583]
          Length = 435

 Score =  690 bits (1781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/425 (75%), Positives = 367/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  ++SRGHWDN   I+EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDRSLKGAISRGHWDNTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQAA+DECY +G LG  +K G+  DIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQAAIDECYDAGFLGKKTKHGHACDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVG+YGCPTTVNNVESIAV PTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGIYGCPTTVNNVESIAVAPTILRRGASWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCT EES+ I+F ELIEKH GGIRGGW+NLLAVIPGG+S P +    +  
Sbjct: 241 LFMISGHVNAPCTFEESLGISFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDIMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT   IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFR  IE RID Y 
Sbjct: 361 LLGRMVEGKAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRSEIERRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|114707373|ref|ZP_01440270.1| NADH-ubiquinone oxidoreductase chain F protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537254|gb|EAU40381.1| NADH-ubiquinone oxidoreductase chain F protein [Fulvimarina pelagi
           HTCC2506]
          Length = 434

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/421 (76%), Positives = 373/421 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +M RGH+D   +I+EKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGLRDKSLKAAMKRGHFDGTKEIVEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  + RPHYLVVNADESEPGTCKDR+IMR++P TLIEGC+IA FA+GAH 
Sbjct: 61  PTGLKWSFMPKESAGRPHYLVVNADESEPGTCKDREIMRNDPFTLIEGCLIAGFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGE+IRERE+LQ AVDECY  GLLG+++K G+D DI+VHHGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEYIREREALQKAVDECYEEGLLGADNKCGWDFDIVVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA W++G GRENN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAGWFAGIGRENNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PCTVEE+MSI+F ELI+KHCGG+RGGWDNLLAVIPGGSSVP +PA  +  
Sbjct: 241 LFCISGHVEQPCTVEEAMSISFRELIDKHCGGVRGGWDNLLAVIPGGSSVPLVPAKDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+DGLK++ + LGTAAVIVMD+STDI+KAI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDGLKDIKTSLGTAAVIVMDKSTDIVKAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V G A+K EID+L +V+K +EG TICALGDAAAWPIQGL+++FRP IE RID++ 
Sbjct: 361 VMERMVVGNAKKSEIDMLLQVTKQVEGHTICALGDAAAWPIQGLMRHFRPEIERRIDEFS 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|319404254|emb|CBI77847.1| NADH dehydrogenase I chain F [Bartonella rochalimae ATCC BAA-1498]
          Length = 435

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/425 (75%), Positives = 368/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + KSL  ++ RGHWD    I+EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQAA+DECY +GLLG  +K G+  DIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHACDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT E+++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPIVRGEDMIN 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR  IE RID Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIERRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RSAVQ 425


>gi|319407262|emb|CBI80901.1| NADH dehydrogenase I chain F [Bartonella sp. 1-1C]
          Length = 435

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/425 (75%), Positives = 367/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + KSL  ++ RGHWD    I+EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQAA+DECY +GLLG  +K G+  DIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHACDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT E+++ ++F ELIEKH GGIRGGW NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGIRGGWSNLLAVIPGGASCPIVRGEDMIN 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK IEG TICALGDAAAWPIQGLI+NFR  IE RID Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQIEGHTICALGDAAAWPIQGLIRNFRSEIERRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RSAVQ 425


>gi|240850588|ref|YP_002971988.1| NADH dehydrogenase I subunit F [Bartonella grahamii as4aup]
 gi|240267711|gb|ACS51299.1| NADH dehydrogenase I subunit F [Bartonella grahamii as4aup]
          Length = 435

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/425 (74%), Positives = 372/425 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +M RGHW+ + ++++KGRDWII+EVKASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGLKDKSLKAAMLRGHWNGLKEMIDKGRDWIIDEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC IA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCAIATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIY+RGE+IRERE+LQAAVDECY +GLLG  +K G+  DII+HHGAGAYICGEETALLE
Sbjct: 121 AFIYIRGEYIREREALQAAVDECYDAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT E+++ ++F ELIEKH GG+RGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGVRGGWNNLLAVIPGGASCPVVRGEDMID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFRP IE RID+Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRPEIERRIDEYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNVVQ 425


>gi|256159529|ref|ZP_05457297.1| NADH dehydrogenase I subunit F [Brucella ceti M490/95/1]
 gi|256254816|ref|ZP_05460352.1| NADH dehydrogenase I subunit F [Brucella ceti B1/94]
 gi|261221997|ref|ZP_05936278.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
 gi|265997961|ref|ZP_06110518.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
 gi|260920581|gb|EEX87234.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
 gi|262552429|gb|EEZ08419.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
          Length = 435

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/425 (75%), Positives = 366/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAVGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|83951746|ref|ZP_00960478.1| NADH-quinone oxidoreductase, F subunit [Roseovarius nubinhibens
           ISM]
 gi|83836752|gb|EAP76049.1| NADH-quinone oxidoreductase, F subunit [Roseovarius nubinhibens
           ISM]
          Length = 431

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/417 (76%), Positives = 366/417 (87%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  +SL  + +RGHWD    IL KGRDWII+ +KASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNLYGMHDRSLKGAQARGHWDGTAGILAKGRDWIIDNMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GL+G N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYEAGLVGKNACKSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    M+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMK 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E+GS LGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDALREVGSSLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLVKG A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR +IE+RI
Sbjct: 361 RVMDRLVKGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDVIEDRI 417


>gi|148559285|ref|YP_001258785.1| NADH dehydrogenase I subunit F [Brucella ovis ATCC 25840]
 gi|254701575|ref|ZP_05163403.1| NADH dehydrogenase I subunit F [Brucella suis bv. 5 str. 513]
 gi|254706978|ref|ZP_05168806.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis M163/99/10]
 gi|254709915|ref|ZP_05171726.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis B2/94]
 gi|254713916|ref|ZP_05175727.1| NADH dehydrogenase I subunit F [Brucella ceti M644/93/1]
 gi|254717026|ref|ZP_05178837.1| NADH dehydrogenase I subunit F [Brucella ceti M13/05/1]
 gi|254718916|ref|ZP_05180727.1| NADH dehydrogenase I subunit F [Brucella sp. 83/13]
 gi|256031408|ref|ZP_05445022.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis M292/94/1]
 gi|256369239|ref|YP_003106747.1| NADH dehydrogenase I, F subunit [Brucella microti CCM 4915]
 gi|261218833|ref|ZP_05933114.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
 gi|261314441|ref|ZP_05953638.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
 gi|261317461|ref|ZP_05956658.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
 gi|261321668|ref|ZP_05960865.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
 gi|261752128|ref|ZP_05995837.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
 gi|265983903|ref|ZP_06096638.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
 gi|265988497|ref|ZP_06101054.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
 gi|294852164|ref|ZP_06792837.1| NADH oxidoreductase [Brucella sp. NVSL 07-0026]
 gi|306838236|ref|ZP_07471088.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. NF 2653]
 gi|306841955|ref|ZP_07474632.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO2]
 gi|306843744|ref|ZP_07476343.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO1]
 gi|148370542|gb|ABQ60521.1| NADH oxidoreductase (quinone), f subunit [Brucella ovis ATCC 25840]
 gi|255999399|gb|ACU47798.1| NADH dehydrogenase I, F subunit [Brucella microti CCM 4915]
 gi|260923922|gb|EEX90490.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
 gi|261294358|gb|EEX97854.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
 gi|261296684|gb|EEY00181.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
 gi|261303467|gb|EEY06964.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
 gi|261741881|gb|EEY29807.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
 gi|264660694|gb|EEZ30955.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
 gi|264662495|gb|EEZ32756.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
 gi|294820753|gb|EFG37752.1| NADH oxidoreductase [Brucella sp. NVSL 07-0026]
 gi|306275935|gb|EFM57648.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO1]
 gi|306287946|gb|EFM59357.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO2]
 gi|306406680|gb|EFM62907.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. NF 2653]
          Length = 435

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/425 (75%), Positives = 366/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|15888604|ref|NP_354285.1| NADH dehydrogenase I subunit F [Agrobacterium tumefaciens str. C58]
 gi|15156324|gb|AAK87070.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens
           str. C58]
          Length = 434

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/419 (75%), Positives = 366/419 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYGL+ KSL   M+RGHWD   +I+EKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGLKDKSLKGVMARGHWDGTKQIIEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+R++PHTLIEGCVIA FA+GAH 
Sbjct: 61  PTGLKWSFMPKENDGRPHYLVVNADESEPGTCKDREILRNDPHTLIEGCVIAGFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE++RERE+LQAA+DECY +GLLG N+K G+D DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKNGWDYDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGASWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHV  PCT E+++ ++F ELIE HCGGIRGGWDNLL VIPGG+S P +    M+ 
Sbjct: 241 LFMVSGHVERPCTFEDALGLSFRELIEHHCGGIRGGWDNLLGVIPGGASCPIVRGEDMKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++E+ S  GT  +IVMD+STD+IKAI R++ F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AIMDFDGMREVKSSFGTGGMIVMDKSTDVIKAIARIAAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ER+VKG AQKREID+L+EV+K IEG TICALGDAAAWP+Q LI+NFRP IE+RIDQY
Sbjct: 361 VLERMVKGNAQKREIDMLFEVTKQIEGHTICALGDAAAWPVQALIRNFRPEIEKRIDQY 419


>gi|256060919|ref|ZP_05451077.1| NADH dehydrogenase I subunit F [Brucella neotomae 5K33]
 gi|261324919|ref|ZP_05964116.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
 gi|261300899|gb|EEY04396.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
          Length = 435

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/425 (75%), Positives = 366/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTI+RRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTIMRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|161618771|ref|YP_001592658.1| NADH dehydrogenase I subunit F [Brucella canis ATCC 23365]
 gi|163843080|ref|YP_001627484.1| NADH dehydrogenase I subunit F [Brucella suis ATCC 23445]
 gi|254704122|ref|ZP_05165950.1| NADH dehydrogenase I subunit F [Brucella suis bv. 3 str. 686]
 gi|260566629|ref|ZP_05837099.1| respiratory-chain NADH dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|261754788|ref|ZP_05998497.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
 gi|161335582|gb|ABX61887.1| NADH-quinone oxidoreductase, F subunit [Brucella canis ATCC 23365]
 gi|163673803|gb|ABY37914.1| NADH-quinone oxidoreductase, F subunit [Brucella suis ATCC 23445]
 gi|260156147|gb|EEW91227.1| respiratory-chain NADH dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|261744541|gb|EEY32467.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
          Length = 435

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/425 (75%), Positives = 365/425 (85%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREVLQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|225627304|ref|ZP_03785341.1| NADH-quinone oxidoreductase, F subunit [Brucella ceti str. Cudo]
 gi|260168542|ref|ZP_05755353.1| NADH dehydrogenase I subunit F [Brucella sp. F5/99]
 gi|261758015|ref|ZP_06001724.1| respiratory-chain NADH dehydrogenase [Brucella sp. F5/99]
 gi|225617309|gb|EEH14354.1| NADH-quinone oxidoreductase, F subunit [Brucella ceti str. Cudo]
 gi|261737999|gb|EEY25995.1| respiratory-chain NADH dehydrogenase [Brucella sp. F5/99]
          Length = 435

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/425 (75%), Positives = 366/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPEQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|17987436|ref|NP_540070.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 1 str. 16M]
 gi|62289756|ref|YP_221549.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 1 str. 9-941]
 gi|82699684|ref|YP_414258.1| NADH dehydrogenase I subunit F [Brucella melitensis biovar Abortus
           2308]
 gi|189024001|ref|YP_001934769.1| NADH dehydrogenase I subunit F [Brucella abortus S19]
 gi|225852323|ref|YP_002732556.1| NADH dehydrogenase I subunit F [Brucella melitensis ATCC 23457]
 gi|237815243|ref|ZP_04594241.1| NADH-quinone oxidoreductase, F subunit [Brucella abortus str. 2308
           A]
 gi|254689063|ref|ZP_05152317.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 6 str. 870]
 gi|254693545|ref|ZP_05155373.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 3 str. Tulya]
 gi|254697197|ref|ZP_05159025.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730093|ref|ZP_05188671.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 4 str. 292]
 gi|256044486|ref|ZP_05447390.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113342|ref|ZP_05454200.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 3 str.
           Ether]
 gi|256257312|ref|ZP_05462848.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 9 str. C68]
 gi|256264178|ref|ZP_05466710.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 2
           str. 63/9]
 gi|260545494|ref|ZP_05821235.1| respiratory-chain NADH dehydrogenase [Brucella abortus NCTC 8038]
 gi|260563840|ref|ZP_05834326.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 1
           str. 16M]
 gi|260754561|ref|ZP_05866909.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260757782|ref|ZP_05870130.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260761607|ref|ZP_05873950.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883588|ref|ZP_05895202.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
 gi|261213810|ref|ZP_05928091.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|265990910|ref|ZP_06103467.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994748|ref|ZP_06107305.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
 gi|297248161|ref|ZP_06931879.1| NADH oxidoreductase (quinone), F subunit [Brucella abortus bv. 5
           str. B3196]
 gi|17983129|gb|AAL52334.1| NADH-quinone oxidoreductase chain f [Brucella melitensis bv. 1 str.
           16M]
 gi|62195888|gb|AAX74188.1| NuoF, NADH dehydrogenase I, F subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615785|emb|CAJ10783.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|189019573|gb|ACD72295.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella
           abortus S19]
 gi|225640688|gb|ACO00602.1| NADH-quinone oxidoreductase, F subunit [Brucella melitensis ATCC
           23457]
 gi|237790080|gb|EEP64290.1| NADH-quinone oxidoreductase, F subunit [Brucella abortus str. 2308
           A]
 gi|260096901|gb|EEW80776.1| respiratory-chain NADH dehydrogenase [Brucella abortus NCTC 8038]
 gi|260153856|gb|EEW88948.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 1
           str. 16M]
 gi|260668100|gb|EEX55040.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260672039|gb|EEX58860.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674669|gb|EEX61490.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260873116|gb|EEX80185.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
 gi|260915417|gb|EEX82278.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|262765861|gb|EEZ11650.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
 gi|263001694|gb|EEZ14269.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094396|gb|EEZ18241.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 2
           str. 63/9]
 gi|297175330|gb|EFH34677.1| NADH oxidoreductase (quinone), F subunit [Brucella abortus bv. 5
           str. B3196]
 gi|326408830|gb|ADZ65895.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella
           melitensis M28]
 gi|326538546|gb|ADZ86761.1| NADH-quinone oxidoreductase, F subunit [Brucella melitensis M5-90]
          Length = 435

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/425 (75%), Positives = 365/425 (85%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+G H 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGVHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|149202664|ref|ZP_01879636.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. TM1035]
 gi|149143946|gb|EDM31980.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. TM1035]
          Length = 431

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/417 (76%), Positives = 365/417 (87%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL  +++RGHWD   KIL+ GRDWI+N++KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRSLKGALARGHWDGTAKILQNGRDWIVNQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQ A+DE YA+GL+G N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQTAIDEAYAAGLVGKNACKSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+SGFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSGFGRPNNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCIRGEFMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 EAIMDFDYLREQRSGLGTAAVIVMDKSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV+G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 RVMDRLVRGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 417


>gi|325292639|ref|YP_004278503.1| NADH dehydrogenase I chain F [Agrobacterium sp. H13-3]
 gi|325060492|gb|ADY64183.1| NADH dehydrogenase I chain F [Agrobacterium sp. H13-3]
          Length = 434

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/419 (75%), Positives = 365/419 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYGL+ KSL    +RGHWD   +I+EKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGLKDKSLKGVRARGHWDGTKQIIEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+R++PHTLIEGCVIA FA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREILRNDPHTLIEGCVIAGFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE++RERE+LQAA+DECY +GLLG N+K G+D DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKNGWDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHV  PCT E+++ ++F ELIE HCGGIRGGWDNLL VIPGG+S P +    M+ 
Sbjct: 241 LFMVSGHVERPCTFEDALGLSFRELIEHHCGGIRGGWDNLLGVIPGGASCPIVRGEDMKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++E+ S  GT  +IVMD+STD+IKAI R++ F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AIMDFDGMREVKSSFGTGGMIVMDKSTDVIKAIARIAAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ER+VKG AQKREID+L+EV+K IEG TICALGDAAAWP+Q LI+NFRP IE+RIDQY
Sbjct: 361 VLERMVKGNAQKREIDMLFEVTKQIEGHTICALGDAAAWPVQALIRNFRPEIEKRIDQY 419


>gi|23501694|ref|NP_697821.1| NADH dehydrogenase I subunit F [Brucella suis 1330]
 gi|23347616|gb|AAN29736.1| NADH dehydrogenase I, F subunit [Brucella suis 1330]
          Length = 435

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/425 (75%), Positives = 364/425 (85%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKG DWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGCDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREVLQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|239831691|ref|ZP_04680020.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum intermedium
           LMG 3301]
 gi|239823958|gb|EEQ95526.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum intermedium
           LMG 3301]
          Length = 435

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/425 (75%), Positives = 363/425 (85%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDRSLKGAMARGHWDNTSGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG  +K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKGNKCGWDMDIFVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P +    M  
Sbjct: 241 LFQISGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKGEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG+++  S  GT  +IVMD+STDIIKAI RL+ F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AIMDFDGMRDKKSSFGTGGLIVMDKSTDIIKAIARLAAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|254469558|ref|ZP_05082963.1| NADH oxidoreductase (quinone), F subunit [Pseudovibrio sp. JE062]
 gi|211961393|gb|EEA96588.1| NADH oxidoreductase (quinone), F subunit [Pseudovibrio sp. JE062]
          Length = 433

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/419 (76%), Positives = 361/419 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTN+YGL    L  +  RG W    +I+EKGRDWII+E+K SGLRGRGGAGF
Sbjct: 1   MLNDSDRIFTNIYGLHDWGLEGARQRGSWSGTKEIIEKGRDWIIDEMKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++A FA+GA  
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLAGFAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAV PTIL+RG +W+SG GRENN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVAPTILKRGGAWFSGIGRENNAGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE+M I+F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    +R 
Sbjct: 241 LFCVSGHVNKPCTVEEAMGISFKELIEKHCGGIRGGWDNLLAVIPGGSSVPCVKGEDIRD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+DGL+E+GS LGTAAVIVMD STDIIKAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 AKMDFDGLREVGSSLGTAAVIVMDNSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+VKG +   EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RIDQY
Sbjct: 361 VMERMVKGESSYDEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEDRIDQY 419


>gi|328543691|ref|YP_004303800.1| Nadh dehydrogenase i chain f transmembrane protein [polymorphum
           gilvum SL003B-26A1]
 gi|326413435|gb|ADZ70498.1| Nadh dehydrogenase i chain f transmembrane protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 433

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/419 (75%), Positives = 361/419 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YGL    L  +  RGHWDN   +++KGRDWI+ E+K+SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNIYGLHDWGLEGARKRGHWDNTKALIDKGRDWIVEEMKSSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA  
Sbjct: 61  PTGLKWSFMPKASDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGRNNKNGYDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G G+ NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGKPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE + I F ELI++HCGGIRGGWDNLLAVIPGGSSVPCL A Q++ 
Sbjct: 241 LFCISGHVNRPCTVEEELGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPCLTADQVKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+ +GSGLGTAAVIVMD+STDIIKAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 VPMDFDTLRGLGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM+R+V+G A K EID+L+ V+K +EG TICALGDAAAWPIQGLIKNFR +IEERID Y
Sbjct: 361 VMDRMVQGNASKEEIDMLFTVTKQVEGHTICALGDAAAWPIQGLIKNFRHVIEERIDDY 419


>gi|84502613|ref|ZP_01000732.1| NADH-quinone oxidoreductase, F subunit [Oceanicola batsensis
           HTCC2597]
 gi|84389008|gb|EAQ01806.1| NADH-quinone oxidoreductase, F subunit [Oceanicola batsensis
           HTCC2597]
          Length = 430

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/418 (76%), Positives = 369/418 (88%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  +  RGHWD    I++KGRDWII+++KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNIYGMHDRTLQGARDRGHWDGTADIIKKGRDWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG+N+ K G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGANAAKSGWDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGRENN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRENNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+   +M+
Sbjct: 241 KLFAVSGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLVKG A   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR +IE+RI
Sbjct: 361 MRVMDRLVKGEASVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDVIEDRI 418


>gi|254465162|ref|ZP_05078573.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium
           Y4I]
 gi|206686070|gb|EDZ46552.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium
           Y4I]
          Length = 432

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/418 (76%), Positives = 366/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ + +RGHWD    I+EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAKARGHWDGTAGIIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y  GLLG+N+   G+D DI +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDEAYDQGLLGNNAAGSGWDFDIFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            A+MD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DALMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLVKG A+  EID+L++V+K +EG TICALGDAAAWPIQGLIKNFR  IE+RI
Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIKNFREEIEDRI 418


>gi|153009746|ref|YP_001370961.1| NADH dehydrogenase I subunit F [Ochrobactrum anthropi ATCC 49188]
 gi|151561634|gb|ABS15132.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 435

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/425 (74%), Positives = 365/425 (85%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG  +K G+D+D++V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKGNKCGWDMDVLVSHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PC +EE + I F +LIEKH GGIRGGWDNLLAVIPGG+S P +    M  
Sbjct: 241 LFQISGHVNTPCVIEEGLGIPFRDLIEKHGGGIRGGWDNLLAVIPGGASCPVIKGEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG+++  S  GT  +IVMD+STDIIKAI RL+ F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AIMDFDGMRDKKSSFGTGGLIVMDKSTDIIKAIARLAAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RNAVQ 425


>gi|149914585|ref|ZP_01903115.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. AzwK-3b]
 gi|149811378|gb|EDM71213.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. AzwK-3b]
          Length = 431

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/417 (75%), Positives = 363/417 (87%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  +SL  +M+RGHWD   KIL+ GR+WII+++KASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNLYGMHDRSLKGAMARGHWDGTAKILQNGREWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IAS+A+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASYAMKAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQTAIDEAYDAGLIGKNACKSGYDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAV PTILRRG  W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAMAGLYGCPTTVNNVESIAVAPTILRRGPEWFAGFGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F+ISGHVN PC VEESMSI+F+ELI+KHCGGIRGGW NL AVIPGGSSVPC+    MR
Sbjct: 241 KIFAISGHVNAPCVVEESMSISFEELIDKHCGGIRGGWSNLKAVIPGGSSVPCVHGENMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MD+D LKE GS LGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAVMDFDALKEKGSSLGTAAVIVMDQSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 RVMDRLVRGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 417


>gi|85703201|ref|ZP_01034305.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. 217]
 gi|85672129|gb|EAQ26986.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. 217]
          Length = 431

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/417 (76%), Positives = 363/417 (87%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL  +++RGHWD   KIL+ GRDWI+N++KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRSLKGALARGHWDGTAKILQNGRDWIVNQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQ A+DE YA+GL+G N+ K G+D DI + HGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQVAIDEAYAAGLVGKNACKSGWDFDIYLAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCIRGEHMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD+STD+I+AIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 EAIMDFDYLREQRSGLGTAAVIVMDKSTDMIRAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV+G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 RVMDRLVRGDAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 417


>gi|90417838|ref|ZP_01225750.1| NADH dehydrogenase I, F subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337510|gb|EAS51161.1| NADH dehydrogenase I, F subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 435

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/421 (75%), Positives = 363/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YGL+ KSL  +M RGH+D +  I+ KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLNDQDRIFTNIYGLRDKSLKGAMKRGHFDGIADIIGKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+NADESEPGTCKDR+IMR++P TLIEGCVIA FA+GA+ 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVINADESEPGTCKDREIMRNDPFTLIEGCVIAGFAMGANT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IYVRGE+IRER++LQ A+DECY +GLLG ++K G+D DIIVHHGAGAYICGEETALLE
Sbjct: 121 CYIYVRGEYIRERQALQRAIDECYEAGLLGRDNKCGWDYDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG  W++G GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGGWFAGLGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHV  PCTVEE M I F ELIEKHCGG+RGGWDNLLAVIPGGSSVP +PA  +  
Sbjct: 241 LYCISGHVEQPCTVEEEMGIPFRELIEKHCGGVRGGWDNLLAVIPGGSSVPLVPAADIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+DGL+E+ + LGTAAVIVMD+STDI+KAI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDGLREIKTSLGTAAVIVMDKSTDIVKAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+  G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR  IE RID Y 
Sbjct: 361 VMERMATGNAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLVRHFRAEIERRIDDYS 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|259418795|ref|ZP_05742712.1| NADH oxidoreductase (quinone), f subunit [Silicibacter sp.
           TrichCH4B]
 gi|259345017|gb|EEW56871.1| NADH oxidoreductase (quinone), f subunit [Silicibacter sp.
           TrichCH4B]
          Length = 432

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/418 (75%), Positives = 365/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    ++EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAQKRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGKNAAGSGWDFDVFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+   +MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVRGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418


>gi|118590033|ref|ZP_01547437.1| NADH-ubiquinone dehydrogenase chain F 1 [Stappia aggregata IAM
           12614]
 gi|118437530|gb|EAV44167.1| NADH-ubiquinone dehydrogenase chain F 1 [Stappia aggregata IAM
           12614]
          Length = 433

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/419 (75%), Positives = 360/419 (85%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YGL    L  +  RG WDN   +++KGRDWII E+K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNIYGLHDWGLEGAKKRGQWDNTKGLIDKGRDWIIQEMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A +A+GA  
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGYAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSALGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN P T EE + I+F E+I+KHCGGIRGGWDNLLAVIPGGSSVPCL A Q++ 
Sbjct: 241 LFCVSGHVNKPSTFEEELGISFAEMIDKHCGGIRGGWDNLLAVIPGGSSVPCLTAEQIKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ +GSGLGTAAVIVMD+STDIIKAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDTLRGLGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+V+G +   EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RID Y
Sbjct: 361 VMERMVRGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEQRIDDY 419


>gi|84516731|ref|ZP_01004089.1| NADH-quinone oxidoreductase, F subunit [Loktanella vestfoldensis
           SKA53]
 gi|84509199|gb|EAQ05658.1| NADH-quinone oxidoreductase, F subunit [Loktanella vestfoldensis
           SKA53]
          Length = 428

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/419 (76%), Positives = 360/419 (85%), Gaps = 1/419 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  + +RGHWD    I++KGRDWI+NE+KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRTLKGAQARGHWDGTADIIKKGRDWIVNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE YA+GL+G N+ K G+D +I + HGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYAAGLVGKNACKSGWDFEIYLTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG +W+SGFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGAWFSGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE MSI F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEEMSIPFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D LKE GS LGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDALKEKGSSLGTAAVIVMDNSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVM RLV+G A   EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR  IE+RI  
Sbjct: 361 RVMARLVEGNASVDEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRDEIEDRIKH 419


>gi|260434174|ref|ZP_05788145.1| NADH oxidoreductase (quinone), f subunit [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260418002|gb|EEX11261.1| NADH oxidoreductase (quinone), f subunit [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 432

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/418 (75%), Positives = 364/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD    ++ KGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNIYGMHERTLKGAQARGHWDGTADLIAKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N+   G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ ++GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRNDLGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLV+G A+  EID+L+EV+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVRGEAELEEIDMLFEVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418


>gi|163738803|ref|ZP_02146217.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis
           BS107]
 gi|161388131|gb|EDQ12486.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 432

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/418 (75%), Positives = 366/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    I+EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGIIEKGRDWIIQNMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+++HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDQGLLGRNAAGSGWDFDVLLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPDWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+   +M+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD++TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKNTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLVKG A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418


>gi|83953906|ref|ZP_00962627.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. NAS-14.1]
 gi|83841851|gb|EAP81020.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. NAS-14.1]
          Length = 431

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/417 (76%), Positives = 362/417 (86%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD    IL+ GRDWII+++KASGLRGRGGAGF
Sbjct: 1   MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVP +P  QMR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPMIPGAQMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV+G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI
Sbjct: 361 RVMDRLVRGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417


>gi|99080589|ref|YP_612743.1| NADH dehydrogenase I subunit F [Ruegeria sp. TM1040]
 gi|99036869|gb|ABF63481.1| NADH-quinone oxidoreductase F subunit [Ruegeria sp. TM1040]
          Length = 432

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/418 (75%), Positives = 365/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    ++EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAQKRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+   +MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDI+KAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVRGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418


>gi|319782986|ref|YP_004142462.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168874|gb|ADV12412.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 434

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/421 (75%), Positives = 366/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL  KSL+ +M+RG WDN   I+ KGR+WI+NE+KASGLRGRGGAGF
Sbjct: 1   MLGDKDRIFTNIYGLFDKSLAGAMARGAWDNTPGIVAKGREWIVNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDRDI+R++PHTL+EG ++A FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPSYLVINADESEPGTCKDRDILRNDPHTLVEGALLAGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQ A++E Y + L+G N+  GYD DI +HHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQRAIEEAYEAKLIGKNNTSGYDFDIYMHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+  
Sbjct: 241 LFCISGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLV+G AQKREID+L +V+K IEG TICALGDAAAWPIQGL+++FR  +E RID++ 
Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|260462235|ref|ZP_05810479.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259032095|gb|EEW33362.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 434

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/421 (75%), Positives = 363/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF N+YGL  KSL+ +M+RG WDN   I+ KGR+WI+NE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFNNIYGLFDKSLAGAMARGAWDNTPGIIAKGREWIVNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDRDI+R++PHTL+EG  IA FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPSYLVVNADESEPGTCKDRDILRNDPHTLVEGSFIAGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQ A+DE Y + L+G N+  GYD DI +HHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQRAIDEAYEAKLIGKNNTSGYDFDIYMHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+  
Sbjct: 241 LFCISGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 TPMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLV+G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR  +E RID++ 
Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|126740382|ref|ZP_01756070.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. SK209-2-6]
 gi|126718518|gb|EBA15232.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. SK209-2-6]
          Length = 432

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/418 (76%), Positives = 362/418 (86%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  + +RGHWD    ++EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLKGAQTRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLVKG A   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVKGEADLEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418


>gi|84686436|ref|ZP_01014330.1| NADH-quinone oxidoreductase, F subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665619|gb|EAQ12095.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 433

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/418 (74%), Positives = 366/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  +  RGHWD    I++KGRDWI++++KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRTLKGAQMRGHWDGTAGIIQKGRDWIVDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N+   G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++ FGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFASFGRKNNEGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+   +M+
Sbjct: 241 KLFAVSGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            A+MD+D L+ E+GSGLGTAAVIVMD+STDI+KAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAVMDFDYLRGELGSGLGTAAVIVMDKSTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVRGEAELEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418


>gi|56697615|ref|YP_167984.1| NADH dehydrogenase I subunit F [Ruegeria pomeroyi DSS-3]
 gi|56679352|gb|AAV96018.1| NADH-quinone oxidoreductase, F subunit [Ruegeria pomeroyi DSS-3]
          Length = 432

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/418 (75%), Positives = 367/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  +M+RGHWD    I+ KGRDWII ++K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRTLKGAMARGHWDGTAGIIGKGRDWIIQQMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N+ K G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAKSGWDFDLYLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+   +M+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+STDI+KAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVRGEAEPEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418


>gi|163741486|ref|ZP_02148877.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161385220|gb|EDQ09598.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis
           2.10]
          Length = 432

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/418 (75%), Positives = 364/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    I+EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGIIEKGRDWIIQNMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDQGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPDWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+   +M+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAA+IVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAIIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLVKG A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418


>gi|83942667|ref|ZP_00955128.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. EE-36]
 gi|83846760|gb|EAP84636.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. EE-36]
          Length = 431

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/417 (75%), Positives = 361/417 (86%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD    IL+ GRDWII+++KASGLRGRGGAGF
Sbjct: 1   MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQTAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVP +P  QMR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPMIPGAQMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAA+IVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAIIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV+G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI
Sbjct: 361 RVMDRLVRGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417


>gi|255262502|ref|ZP_05341844.1| NADH oxidoreductase (quinone), f subunit [Thalassiobium sp. R2A62]
 gi|255104837|gb|EET47511.1| NADH oxidoreductase (quinone), f subunit [Thalassiobium sp. R2A62]
          Length = 429

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/418 (75%), Positives = 365/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG+  +SL  +  RGHWD   KI++ GRDWII+++KASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNIYGMHDRSLKGAQKRGHWDGTAKIIKNGRDWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAKTGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+    M+
Sbjct: 241 KLFAISGHVNNPCVVEEEMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGEHMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDQSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLVKG A   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVKGDADPEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418


>gi|86137594|ref|ZP_01056171.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. MED193]
 gi|85825929|gb|EAQ46127.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. MED193]
          Length = 432

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/418 (75%), Positives = 362/418 (86%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  + +RGHWD    ++EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLKGAQARGHWDGTSGLIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLVKG A   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVKGEADLEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418


>gi|126736062|ref|ZP_01751806.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. CCS2]
 gi|126714619|gb|EBA11486.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. CCS2]
          Length = 428

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/417 (76%), Positives = 360/417 (86%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D++RIFTNLYG+  ++L  + +RGHWD    I++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLKDENRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DECYA+GL+G N+ K G+D DI + HGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDECYAAGLVGPNAAKSGWDFDIYLTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++G GR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGDWFAGMGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEEMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MD+D LKE GS LGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAVMDFDALKEKGSSLGTAAVIVMDNSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM RLV+G A   EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR  IE+RI
Sbjct: 361 RVMARLVEGNASVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRDEIEDRI 417


>gi|254475856|ref|ZP_05089242.1| NADH oxidoreductase (quinone), F subunit [Ruegeria sp. R11]
 gi|214030099|gb|EEB70934.1| NADH oxidoreductase (quinone), F subunit [Ruegeria sp. R11]
          Length = 432

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/418 (75%), Positives = 363/418 (86%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    ++EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDEAYDNGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLVKG A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 418


>gi|254512379|ref|ZP_05124446.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae
           bacterium KLH11]
 gi|221536090|gb|EEE39078.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae
           bacterium KLH11]
          Length = 433

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/418 (75%), Positives = 364/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD    ++ KGRDWII  +K SGLRGRGGAGF
Sbjct: 2   MLKDQDRIFTNIYGMHERTLKGAQARGHWDGTAGLINKGRDWIIQTMKDSGLRGRGGAGF 61

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 62  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 121

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 122 CYIYLRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALI 181

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT
Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 241

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F++LIE HCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 242 KLFAISGHVNNPCVVEEAMSISFEDLIETHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 301

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 302 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 361

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 362 MRVMDRLVRGEAELEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 419


>gi|13471402|ref|NP_102968.1| NADH dehydrogenase I subunit F [Mesorhizobium loti MAFF303099]
 gi|14022144|dbj|BAB48754.1| NADH-ubiquinone dehydrogenase chain F 1 [Mesorhizobium loti
           MAFF303099]
          Length = 434

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/421 (74%), Positives = 364/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL  KSL+ +M+RG WDN   I+ KGR+WI+NE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLFDKSLAGAMARGAWDNTPGIVAKGREWIVNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDRDI+R++PHTL+EG ++A FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPSYLVINADESEPGTCKDRDILRNDPHTLVEGALLAGFAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQ A+DE Y + L+G  +  GYD D+ +HHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQRAIDEAYEAKLIGKGNTSGYDFDVYMHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+  
Sbjct: 241 LFCVSGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 TPMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLV+G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR  +E RID++ 
Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|89071182|ref|ZP_01158373.1| NADH-quinone oxidoreductase, F subunit [Oceanicola granulosus
           HTCC2516]
 gi|89043278|gb|EAR49504.1| NADH-quinone oxidoreductase, F subunit [Oceanicola granulosus
           HTCC2516]
          Length = 428

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/420 (75%), Positives = 364/420 (86%), Gaps = 2/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    ++ KGR+WII E+K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRTLAGAKKRGHWDGTAGLIGKGREWIIEEMKGSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N+   G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC VEE+MSI+F+ELI+KHCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAVSGHVNQPCVVEEAMSISFEELIDKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLV+G A   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVRGDAAVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKH 420


>gi|254501883|ref|ZP_05114034.1| NADH oxidoreductase (quinone), F subunit [Labrenzia alexandrii
           DFL-11]
 gi|222437954|gb|EEE44633.1| NADH oxidoreductase (quinone), F subunit [Labrenzia alexandrii
           DFL-11]
          Length = 433

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/419 (74%), Positives = 356/419 (84%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL    L  +  RG WDN   +L+KGRDWII E+K SGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLHDWGLEGAKKRGQWDNTKGLLDKGRDWIIQEMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA  
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG  W++  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGGWFASLGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN P T EE + + F E+I+KHCGGIRGGWDNLLAVIPGGSSVPC  A +++ 
Sbjct: 241 LFCVSGHVNQPATFEEELGVPFSEMIDKHCGGIRGGWDNLLAVIPGGSSVPCCTADEIKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ MGSGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDTLRGMGSGLGTAAVIVMDKSTDVIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+VKG +   EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RID Y
Sbjct: 361 VMERMVKGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEQRIDDY 419


>gi|126729558|ref|ZP_01745371.1| NADH-quinone oxidoreductase, F subunit [Sagittula stellata E-37]
 gi|126709677|gb|EBA08730.1| NADH-quinone oxidoreductase, F subunit [Sagittula stellata E-37]
          Length = 432

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/418 (75%), Positives = 363/418 (86%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  +  RGHWD    ++EKGRDWII E+K SGLRGRGGAGF
Sbjct: 1   MLHDQDRIFTNLYGMHDRTLDGAKKRGHWDGTAGLIEKGRDWIIQEMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+ ASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLFASFAMQAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQ A+DE Y +GL+G N+   G+D +I +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQRAIDEAYDAGLVGPNAAGSGWDFEIFLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGASW+S FGRENN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSSFGRENNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+   +M+
Sbjct: 241 KLFAVSGHVNKPCVVEEAMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKDTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLV+G A + EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVRGEADEEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418


>gi|159043865|ref|YP_001532659.1| NADH dehydrogenase subunit I F [Dinoroseobacter shibae DFL 12]
 gi|157911625|gb|ABV93058.1| NADH-quinone oxidoreductase, F subunit [Dinoroseobacter shibae DFL
           12]
          Length = 433

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/418 (75%), Positives = 365/418 (87%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L+ +  RGHWD  DK+++ GRD I+  +K SGLRGRGGAGF
Sbjct: 1   MLQDQDRIFTNIYGMHDRTLAGARKRGHWDGTDKLIQMGRDDIVKIMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGE+IRERE+LQAA+DE Y +GLLG N+   G+D D+ + HGAGAYICGEETAL+
Sbjct: 121 SYIYIRGEYIREREALQAAIDEAYEAGLLGKNAAGSGWDFDLYLTHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAQFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELI+KHCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNQPCVVEEAMSISFEELIDKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDQSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMDRLVRGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418


>gi|163746205|ref|ZP_02153564.1| NADH-quinone oxidoreductase chain F [Oceanibulbus indolifex HEL-45]
 gi|161380950|gb|EDQ05360.1| NADH-quinone oxidoreductase chain F [Oceanibulbus indolifex HEL-45]
          Length = 431

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/417 (75%), Positives = 359/417 (86%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG+  ++L  + SRGHWD    I++KGRDWI++++KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGMHDRTLKGAQSRGHWDGTAGIIQKGRDWIVDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQ A+DE Y +GL+G N SK G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYLRGEYIREREALQTAIDEAYEAGLVGKNASKSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRANNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI F+ELIE HCGGIRGGWDNL AVIPGGSSVP +P   MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSIGFEELIETHCGGIRGGWDNLKAVIPGGSSVPLIPGKDMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI
Sbjct: 361 RVMDRLVTGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417


>gi|110680462|ref|YP_683469.1| NADH dehydrogenase I subunit F [Roseobacter denitrificans OCh 114]
 gi|109456578|gb|ABG32783.1| NADH-quinone oxidoreductase chain F [Roseobacter denitrificans OCh
           114]
          Length = 431

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/417 (74%), Positives = 360/417 (86%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD  D I++KGRDWI++++KASGLRGRGGAGF
Sbjct: 1   MLNDQDRIFTNIYGMHDRTLKGAQARGHWDGTDAIIKKGRDWIVDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+   G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAGSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNL AVIPGGSSVP +P   M+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLKAVIPGGSSVPLIPGKDMK 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI
Sbjct: 361 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417


>gi|163732058|ref|ZP_02139504.1| NADH-quinone oxidoreductase chain F [Roseobacter litoralis Och 149]
 gi|161394356|gb|EDQ18679.1| NADH-quinone oxidoreductase chain F [Roseobacter litoralis Och 149]
          Length = 431

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/417 (74%), Positives = 360/417 (86%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD  D I++KGRDWI++++KASGLRGRGGAGF
Sbjct: 1   MLNDQDRIFTNIYGMHDRTLKGAQARGHWDGTDAIIKKGRDWIVDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+   G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAGSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGW NL AVIPGGSSVP +P  QM+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWGNLKAVIPGGSSVPMIPGAQMK 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI
Sbjct: 361 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417


>gi|254452337|ref|ZP_05065774.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter
           antarcticus 238]
 gi|198266743|gb|EDY91013.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter
           antarcticus 238]
          Length = 428

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/417 (75%), Positives = 361/417 (86%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L  + +RGHWD    I++KGR WI++++KASGLRGRGGAGF
Sbjct: 2   MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGRAWIVDQMKASGLRGRGGAGF 61

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 62  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 121

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DECY +G++G N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 122 CYIYIRGEYIREKEALQAAIDECYDAGMVGKNACKSGWDFDIYLHHGAGAYICGEETALL 181

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIA VPTILRRG  W++GFGR NN GT
Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIATVPTILRRGPDWFAGFGRPNNSGT 241

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL++ISGHVN PC VEESMSI F+ELIEKHCGG+RGGWDNL AVIPGGSSVP +    MR
Sbjct: 242 KLYAISGHVNNPCVVEESMSIPFEELIEKHCGGVRGGWDNLKAVIPGGSSVPMVRGENMR 301

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+DGLKE GS LGTAAVIVMD++TD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 302 DAIMDFDGLKEKGSSLGTAAVIVMDKNTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 361

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLVKG A   EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR  IE+RI
Sbjct: 362 RVMDRLVKGDADVSEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRGEIEDRI 418


>gi|323138150|ref|ZP_08073223.1| NADH-quinone oxidoreductase, F subunit [Methylocystis sp. ATCC
           49242]
 gi|322396612|gb|EFX99140.1| NADH-quinone oxidoreductase, F subunit [Methylocystis sp. ATCC
           49242]
          Length = 434

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/420 (75%), Positives = 364/420 (86%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+D DRIFTNLYGL  +SL+ +  RG WDN   +L KGRD II EVKASGLRGRGGAGF
Sbjct: 1   MLSDSDRIFTNLYGLGDRSLAGARKRGQWDNTKALLAKGRDKIIEEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK V   RPHYLV+NADESEPGTCKDR+IMR++PHTL+EG ++ASFA+GAH
Sbjct: 61  STGLKWSFMPKDVDPRRPHYLVINADESEPGTCKDREIMRNDPHTLVEGALVASFAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFI ERE+LQ AVDE YA+ L+G N+  GY  D+ VHHGAGAYICGEETAL+
Sbjct: 121 ACYIYVRGEFIAEREALQRAVDEAYAANLIGKNNVHGYPFDLYVHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG +W++G G+ NN GT
Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGPNWFAGIGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLFSISGHVN PC VEE+MSI+F ELI+ HCGG+RGGWDNLLAVIPGGSSV C+PA Q+ 
Sbjct: 241 KLFSISGHVNRPCNVEEAMSISFRELIDTHCGGVRGGWDNLLAVIPGGSSVRCVPAHQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++GSGLGTAAVIVMD+STDII+AI RL+ FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DCPMDFDSLVKLGSGLGTAAVIVMDKSTDIIRAIARLAYFYKHESCGQCTPCREGTGWMY 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV++R+V+G A K+EID+L++VSK IEG TICALGDAAAWPIQGLI +FR +IE+RIDQY
Sbjct: 361 RVVQRMVEGRANKKEIDMLFDVSKQIEGHTICALGDAAAWPIQGLITHFRDVIEQRIDQY 420


>gi|254486414|ref|ZP_05099619.1| NADH oxidoreductase (quinone), F subunit [Roseobacter sp. GAI101]
 gi|214043283|gb|EEB83921.1| NADH oxidoreductase (quinone), F subunit [Roseobacter sp. GAI101]
          Length = 431

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/417 (74%), Positives = 358/417 (85%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD    IL+ GRDWII+++KASGLRGRGGAGF
Sbjct: 1   MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMQANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGW NL AVIPGGSSVP +P  QM+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWSNLKAVIPGGSSVPMIPGAQMK 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV G A   EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI
Sbjct: 361 RVMDRLVTGDANPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417


>gi|254461305|ref|ZP_05074721.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206677894|gb|EDZ42381.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 433

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/418 (74%), Positives = 361/418 (86%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L  + +RGHWD    I++KGRDW+I+++KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAAIIKKGRDWVIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAKSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGI+GGWDNL AVIPGGSSVPC+   +MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIKGGWDNLKAVIPGGSSVPCVRGEKMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            A MD+D L+ ++GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM
Sbjct: 301 DATMDFDYLRNDLGSGLGTAAVIVMDKDTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVMERLV G A   EID+L++V+K +EG TICALGDAAAWPIQGLI NFR  IE+RI
Sbjct: 361 MRVMERLVHGNADPSEIDMLWDVTKQVEGHTICALGDAAAWPIQGLINNFRDEIEDRI 418


>gi|254437215|ref|ZP_05050709.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter
           antarcticus 307]
 gi|198252661|gb|EDY76975.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter
           antarcticus 307]
          Length = 428

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/417 (75%), Positives = 358/417 (85%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L  + +RGHWD    I++KGR+WII+ +KASGLRGRGGAGF
Sbjct: 2   MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGREWIIDNMKASGLRGRGGAGF 61

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 62  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 121

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DECY +G++G N SK G+D DI + HGAGAYICGEETALL
Sbjct: 122 CYIYIRGEYIREKEALQAAIDECYEAGMVGKNASKSGWDFDIYLVHGAGAYICGEETALL 181

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG+ W++GFGR NN GT
Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGSDWFAGFGRPNNAGT 241

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEESMSI F+ELIEKHC GIRGGW NL AVIPGG+SVP +    MR
Sbjct: 242 KLFAISGHVNNPCVVEESMSIPFEELIEKHCDGIRGGWGNLKAVIPGGASVPMVRGENMR 301

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D LKE GS LGTAAVIVMD+ TD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM
Sbjct: 302 DAIMDFDALKEKGSSLGTAAVIVMDKDTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 361

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVMERLVKG A   EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR  IE+RI
Sbjct: 362 RVMERLVKGDADVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRGEIEDRI 418


>gi|126727150|ref|ZP_01742987.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium
           HTCC2150]
 gi|126703578|gb|EBA02674.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium
           HTCC2150]
          Length = 433

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/419 (73%), Positives = 361/419 (86%), Gaps = 1/419 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L+ + +RGHWD    I++KGRDWI++E+KASGLRGRGGAGF
Sbjct: 3   MLADKDRIFTNLYGMHDRTLAGAKARGHWDGTAAIIKKGRDWIVDEMKASGLRGRGGAGF 62

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG ++ASFA+ A+ 
Sbjct: 63  PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALVASFAMNANT 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEFIRERE+LQ A+DE YA GLLG N+ K G+D D+ +HHGAGAYICGEETALL
Sbjct: 123 CYIYIRGEFIREREALQNAIDEAYADGLLGKNAAKSGWDFDLYLHHGAGAYICGEETALL 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG+KG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG+SW+ GFGR+NN GT
Sbjct: 183 ESLEGRKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGSSWFKGFGRDNNAGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSIT  EL++KHCGG+RGGW NL AVIPGGSSVP LPA   +
Sbjct: 243 KLFAISGHVNNPCVVEEAMSITLPELLDKHCGGVRGGWGNLKAVIPGGSSVPLLPADICK 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 303 DAIMDFDWLREQRSGLGTAAVIVMDQSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVM+RLV G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI  
Sbjct: 363 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKH 421


>gi|158423296|ref|YP_001524588.1| NADH dehydrogenase I subunit F [Azorhizobium caulinodans ORS 571]
 gi|158330185|dbj|BAF87670.1| NADH-quinone oxidoreductase F subunit protein [Azorhizobium
           caulinodans ORS 571]
          Length = 433

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/419 (73%), Positives = 354/419 (84%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG +   L  ++ RG+WD    ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGYEDSGLKGALKRGNWDGTKGILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK    RPHYLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+GAH 
Sbjct: 61  STGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE++RERE L+AA+DE Y +GL+G N+  GY  D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYVRERERLEAAIDEAYDAGLIGKNNIHGYPFDLYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV P ILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPEILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF I GHVN PC VE++MSITF EL+EKH GGIRGGWDNLLA+IPGG+S P +PA     
Sbjct: 241 LFGILGHVNTPCVVEDAMSITFRELVEKHGGGIRGGWDNLLAIIPGGASCPVVPAAACED 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            I+D+DGL+ + S  GTA V+VMD+STDI++AI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 LILDFDGLRAVKSSFGTAGVLVMDKSTDIVRAIARISYFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ R+ +G AQKREID L EV+  IEG TICALGDAAAWP+QGLI+NFR  IE+RIDQY
Sbjct: 361 VLNRMAEGRAQKREIDQLLEVTTQIEGHTICALGDAAAWPVQGLIRNFRHEIEKRIDQY 419


>gi|310816709|ref|YP_003964673.1| NADH dehydrogenase I subunit F [Ketogulonicigenium vulgare Y25]
 gi|308755444|gb|ADO43373.1| NADH dehydrogenase I subunit F [Ketogulonicigenium vulgare Y25]
          Length = 437

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/432 (73%), Positives = 358/432 (82%), Gaps = 15/432 (3%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+DQDRIFTN+YG   +SL+ +  RGH+D    I+ KGRDWI+NE+KASGLRGRGGAGF
Sbjct: 1   MLSDQDRIFTNIYGQHDRSLAGAQMRGHFDGTAGIIAKGRDWIVNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK  SDRP YLVVNADESEPGTCKDR+I+RHEP  LIEGC++ASFAI AH 
Sbjct: 61  STGLKWSFMPKD-SDRPAYLVVNADESEPGTCKDREILRHEPFALIEGCLVASFAINAHA 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+D CY +GLLG+N+   G+D D+ +HHGAGAYICGEETALL
Sbjct: 120 CYIYIRGEYIREREALQAAIDACYDAGLLGANAAGSGWDFDLYLHHGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAV PTILRRGASW+SGFGR NN GT
Sbjct: 180 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGASWFSGFGRPNNAGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHC-------------GGIRGGWDNLLAVIPG 286
           KLF+ISGHVN PC VEE MSI F ELI++HC             GGIRGGWDNL  VIPG
Sbjct: 240 KLFAISGHVNRPCIVEEEMSIPFRELIDRHCGGIRGGGGTARHCGGIRGGWDNLKGVIPG 299

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           GSSVP LPA  M  AIMD+D L+   SGLGTAAVIVMD+S DI+KAIWRLS FYKHESCG
Sbjct: 300 GSSVPVLPASVMGEAIMDFDWLRAQQSGLGTAAVIVMDQSVDIVKAIWRLSKFYKHESCG 359

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           QCTPCREGTGWMMRVMERLV G A   EID+L EV+K +EG TICALGDAAAWPIQGL++
Sbjct: 360 QCTPCREGTGWMMRVMERLVAGTADPAEIDMLIEVTKQVEGHTICALGDAAAWPIQGLVR 419

Query: 407 NFRPLIEERIDQ 418
           +FRP IE R+ Q
Sbjct: 420 HFRPEIEARLHQ 431


>gi|154248547|ref|YP_001419505.1| NADH dehydrogenase I subunit F [Xanthobacter autotrophicus Py2]
 gi|154162632|gb|ABS69848.1| NADH-quinone oxidoreductase, F subunit [Xanthobacter autotrophicus
           Py2]
          Length = 433

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/419 (73%), Positives = 356/419 (84%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGLQ   L  + +RG+WD    ILEKGRDWIINE+K SGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGLQDFGLKGARARGNWDGTKAILEKGRDWIINEMKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK    RPHYLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+GAH 
Sbjct: 61  STGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+I ER+ LQAA+DE Y +GL+G ++   Y  D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIFERKRLQAAIDEAYDAGLIGKSNIHDYPFDLYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFS++GHVN PC VEE+MSI F EL++KH GG+RGGWDNLL +IPGG+S P +PA Q   
Sbjct: 241 LFSLAGHVNTPCVVEEAMSIPFRELVDKHGGGVRGGWDNLLGIIPGGASCPVIPAEQCAD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DG + + S LGTA V+VMD+STDIIKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 LIMDFDGTRAVKSSLGTAGVLVMDKSTDIIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ R+ +G AQKREID+L EV+  IEG TICALGDAAAWP+QGLI+++R +IEERIDQY
Sbjct: 361 VVNRMAEGRAQKREIDMLLEVTTQIEGHTICALGDAAAWPVQGLIRHYRHVIEERIDQY 419


>gi|119384975|ref|YP_916031.1| NADH dehydrogenase I subunit F [Paracoccus denitrificans PD1222]
 gi|119374742|gb|ABL70335.1| NADH dehydrogenase subunit F [Paracoccus denitrificans PD1222]
          Length = 431

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/417 (73%), Positives = 354/417 (84%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL+ +  RGHWD    I+++GRD II+E+KASGLRGRGGAGF
Sbjct: 1   MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH 
Sbjct: 61  PTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFIRERE+LQAA+DECY +GLLG N+   G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ++GHVN PC VEE+MSI   ELIEKH GGIRGGW NL AVIPGG+S P L A Q  
Sbjct: 241 KLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMDYDG++E+ S  GTA +IVMD+STD++KAIWRLS F+KHESCGQCTPCREGTGWMM
Sbjct: 301 NAIMDYDGMRELRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVMERLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 RVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 417


>gi|266651|sp|P29913|NQO1_PARDE RecName: Full=NADH-quinone oxidoreductase chain 1; AltName:
           Full=NADH dehydrogenase I, chain 1; AltName: Full=NDH-1,
           chain 1
 gi|150598|gb|AAA25585.1| NADH dehydrogenase [Paracoccus denitrificans]
          Length = 431

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/417 (73%), Positives = 354/417 (84%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL+ +  RGHWD    I+++GRD II+E+KASGLRGRGGAGF
Sbjct: 1   MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH 
Sbjct: 61  PTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFIRERE+LQAA+DECY +GLLG N+   G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ++GHVN PC VEE+MSI   ELIEKH GGIRGGW NL AVIPGG+S P L A Q  
Sbjct: 241 KLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMDYDG++++ S  GTA +IVMD+STD++KAIWRLS F+KHESCGQCTPCREGTGWMM
Sbjct: 301 NAIMDYDGMRDVRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVMERLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 RVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRI 417


>gi|170742516|ref|YP_001771171.1| NADH dehydrogenase I subunit F [Methylobacterium sp. 4-46]
 gi|168196790|gb|ACA18737.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium sp. 4-46]
          Length = 433

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/419 (72%), Positives = 355/419 (84%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+DQDRIFTNLYG     L  +  RG WD    +LE+GRDWII+E+K SGLRGRGGAGF
Sbjct: 1   MLSDQDRIFTNLYGFHSPGLDAARRRGAWDGTKFLLEQGRDWIIDEMKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH 
Sbjct: 61  STGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGE++ E+ +LQ AVDE Y + L+G ++  GY  D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEYVAEKHALQRAVDEAYEARLIGPDNVHGYPFDLYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV   ILRRGA+W+SG GR NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGAILRRGAAWFSGIGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE++ I F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+  
Sbjct: 241 LFCVSGHVNRPCNVEEALGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAQIAD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ +GSGLGTAAVIV+D++TDI+ AI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDTLRGLGSGLGTAAVIVLDKTTDIVAAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R+ +G AQKREID+L +V+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y
Sbjct: 361 VMLRMAEGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRY 419


>gi|89053670|ref|YP_509121.1| NADH dehydrogenase I subunit F [Jannaschia sp. CCS1]
 gi|88863219|gb|ABD54096.1| NADH dehydrogenase subunit F [Jannaschia sp. CCS1]
          Length = 431

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/418 (73%), Positives = 358/418 (85%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG+  +SL+ +  RGHWD    ++  GRD I+  +KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGMHDRSLAGAKQRGHWDGTKDLIGLGRDKIVEIMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y  GLLG ++ K G+D D+ + HGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYEDGLLGKDAAKSGWDFDLYLAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG+KG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGRKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNQPCVVEEAMSISFEELIETHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ ++ SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRNDLQSGLGTAAVIVMDNSTDMIKAIWRLAAFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           MRVMERLVKG AQ  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI
Sbjct: 361 MRVMERLVKGEAQVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRI 418


>gi|114771823|ref|ZP_01449216.1| NADH-quinone oxidoreductase, F subunit [alpha proteobacterium
           HTCC2255]
 gi|114547639|gb|EAU50530.1| NADH-quinone oxidoreductase, F subunit [alpha proteobacterium
           HTCC2255]
          Length = 431

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/417 (73%), Positives = 353/417 (84%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  +SL  + SRGHW    KI++ G DWII+E+K SGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNLYGMHDRSLRGAQSRGHWSETAKIIKNGHDWIIDEMKNSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMR++PH LIEG +IASFA+ ++ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRNDPHALIEGALIASFAMSSNA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEFIRERE+LQ A+DECY +GLLG N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEFIREREALQLAIDECYDAGLLGKNAAKSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+  FGRENN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGDWFKSFGRENNYGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI   EL+++HCGG+RGGW NL AVIPGGSSVP LPA    
Sbjct: 241 KLFAISGHVNNPCVVEEAMSIPLQELLDRHCGGVRGGWKNLKAVIPGGSSVPLLPADICS 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD++TDIIKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDWLREQRSGLGTAAVIVMDQNTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLVKG A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI
Sbjct: 361 RVMDRLVKGDAEPDEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417


>gi|85708748|ref|ZP_01039814.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. NAP1]
 gi|85690282|gb|EAQ30285.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. NAP1]
          Length = 430

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/422 (71%), Positives = 358/422 (84%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG Q   L  + +RG WDN   ++E+G+D II E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNVYGFQDAGLKAAQARGDWDNTKALIERGQDAIIEEIKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   D RP +LV+NADESEPG+CKDR+I+RH+PH L+EG ++A FA+ A 
Sbjct: 61  PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLVEGALVAGFAMRAR 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGE+IRE + LQ A+DE Y +GL+G N S  G+D D+ +H GAGAYICGEETA+
Sbjct: 121 AAYIYIRGEYIREAQVLQKAIDEAYDAGLIGKNASGSGFDFDVFMHRGAGAYICGEETAM 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTILRR A+W+S FGRENN+G
Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRSANWFSSFGRENNKG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHV  PC VEE+MSI F+ELIEKHCGGIRGGWDNLLAVIPGGSSVP +PA Q+
Sbjct: 241 TKLFQISGHVEKPCVVEEAMSIPFEELIEKHCGGIRGGWDNLLAVIPGGSSVPLVPAEQI 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
           R A MD+DGLK++GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 RNAPMDFDGLKDLGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RVMERL  G A   EID+L+EV+K +EG TICALGDAAAWPIQGLI++FRP +E RI++
Sbjct: 361 WRVMERLRTGDAAIEEIDMLHEVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420

Query: 419 YH 420
           ++
Sbjct: 421 HN 422


>gi|154253660|ref|YP_001414484.1| NADH dehydrogenase I subunit F [Parvibaculum lavamentivorans DS-1]
 gi|154157610|gb|ABS64827.1| NADH-quinone oxidoreductase, F subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 429

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/417 (74%), Positives = 347/417 (83%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGLQ   L  + SRG WD    I+ KGRDWI++E+K SGLRGRGGAGF
Sbjct: 1   MLEDKDRIFTNLYGLQDWRLKAARSRGDWDGTADIIAKGRDWILDEMKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+P  LIEGC+IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPQKLIEGCLIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IYVRGEFIRERE LQAA+DE Y +GL+G N+   G+D +I VHHGAGAYICGEETALL
Sbjct: 121 CYIYVRGEFIREREQLQAAIDEAYEAGLVGKNAAGSGWDFEIYVHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPANVGLYG PTTVNNVESIAV PTILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGAPTTVNNVESIAVAPTILRRGATWFSSLGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE M I   EL+EKH GG+RGGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KLFCISGHVNRPCNVEEEMGIPLRELLEKHAGGVRGGWDNLLAVIPGGSSVPLLPKSVCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDSLKNVQSGLGTAAVIVMDKSTDVIKAIARLSAFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVMERLV G A+ +EID+L +V+K +EG TICALGDAAAWP+QGLI++FR  IEERI
Sbjct: 361 RVMERLVAGDAEVQEIDMLLDVTKRVEGHTICALGDAAAWPVQGLIRHFRGTIEERI 417


>gi|170748473|ref|YP_001754733.1| NADH dehydrogenase I subunit F [Methylobacterium radiotolerans JCM
           2831]
 gi|170654995|gb|ACB24050.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 433

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/419 (71%), Positives = 352/419 (84%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+DQDRIFTNLYGL    L  +  RG WD    +LE+GRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLSDQDRIFTNLYGLHSPGLEAAKKRGAWDGTKFLLEQGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++A FA+ AH 
Sbjct: 61  PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCMLACFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ E+ +LQ AVDE YA+ L+G ++   Y  DI VHHGAGAYICGEETAL+E
Sbjct: 121 CYIYIRGEYVAEKHALQKAVDEAYAARLVGQSNVHDYPFDIYVHHGAGAYICGEETALIE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV  TILRRG +W++G G +NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + ITF ELI++HCGG+RGGWDNLL  IPGGSSVP +PA Q+  
Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDRHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIVD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVAAITRISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM+R+ +G AQKREID+L+EV+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y
Sbjct: 361 VMQRMTEGRAQKREIDMLFEVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRY 419


>gi|146341108|ref|YP_001206156.1| NADH dehydrogenase I subunit F [Bradyrhizobium sp. ORS278]
 gi|146193914|emb|CAL77931.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           (NDH-1, chain F) [Bradyrhizobium sp. ORS278]
          Length = 441

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/420 (74%), Positives = 351/420 (83%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGLQ   L  +  RG WD    +++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFTNLYGLQDWGLEGARRRGSWDGTKGLIDKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+ AH
Sbjct: 61  PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLASFAMNAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  G+  DI V HGAGAYICGEETALL
Sbjct: 121 TCYIYVRGEFIRERERLQAAIDQAYEAKLVGKDNVHGWPFDIYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGASW++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGASWFAGIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR  IE RIDQY
Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLITHFRHEIEARIDQY 420


>gi|217979054|ref|YP_002363201.1| NADH dehydrogenase I subunit F [Methylocella silvestris BL2]
 gi|217504430|gb|ACK51839.1| NADH-quinone oxidoreductase, F subunit [Methylocella silvestris
           BL2]
          Length = 436

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/419 (71%), Positives = 355/419 (84%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L  +++RG WDN   ++EKG+DWI+ E+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFTNLYGFGDWGLKGALARGAWDNTKGLIEKGKDWILTEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  + RP YLVVNADESEPGTCKDR+IMR++PH L+EGC +ASFA+ AH 
Sbjct: 61  PTGLKWSFMPKADAARPSYLVVNADESEPGTCKDREIMRNDPHLLVEGCFVASFAMEAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+I E + L+AA+ + Y +GL+G ++  G+  DI VH GAGAYICGEETALLE
Sbjct: 121 CYIYIRGEYILEADRLEAAIQQAYEAGLVGKDNIHGWPFDIYVHRGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FG +NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGAKNNSGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PC VEE+MSI F ELI+KHCGG+RGG DNLLAVIPGGSSVPC+PA Q+  
Sbjct: 241 LFCISGHVNKPCNVEEAMSIPFRELIDKHCGGVRGGSDNLLAVIPGGSSVPCVPAAQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+++ SGLGTAAVIVMD+STDII+AI RLS FYKHESCGQCTPCREGTGW+ R
Sbjct: 301 AAMDFDTLRDLKSGLGTAAVIVMDKSTDIIRAIARLSYFYKHESCGQCTPCREGTGWLWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ R+ +G AQKREID+L EV+  IEG TICALGDAAAWP+QGLI++FRP IE+RIDQY
Sbjct: 361 VVTRMAEGRAQKREIDMLLEVTTQIEGHTICALGDAAAWPVQGLIRHFRPEIEKRIDQY 419


>gi|260574764|ref|ZP_05842767.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sp. SW2]
 gi|259023181|gb|EEW26474.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sp. SW2]
          Length = 431

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/417 (73%), Positives = 352/417 (84%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL+ +  RG+WD     L  GRDWI+++VKASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRSLAGARKRGNWDGTAGFLAHGRDWIVDQVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPKV   RP YLV+NADESEPGTCKDR+IMRH+PHTL+EG +IA FA+GA  
Sbjct: 61  PTGLKWSFMPKVSDGRPAYLVINADESEPGTCKDREIMRHDPHTLVEGALIAGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GL+G N+   GY+ D+ + HGAGAYICGEETA+L
Sbjct: 121 GYIYIRGEYIREREALQAAIDEAYDAGLIGKNACGSGYNYDLYLVHGAGAYICGEETAML 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGASW++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAASGLYGCPTTVNNVESIAVVPTILRRGASWFAGFGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+MSI   EL++KHCGG+RGGW NL AVIPGGSSVP L A Q  
Sbjct: 241 KLFGISGHVVNPCVVEEAMSIPLRELLDKHCGGVRGGWKNLKAVIPGGSSVPMLNAAQCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 EAIMDFDWLREQRSGLGTAAVIVMDQSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLVKG A+  EID+L  V+K +EG TICALGDAAAWPIQGL+++FR  IE+RI
Sbjct: 361 RVMDRLVKGEAEIEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLVRHFREEIEDRI 417


>gi|220924010|ref|YP_002499312.1| NADH dehydrogenase subunit I F [Methylobacterium nodulans ORS 2060]
 gi|219948617|gb|ACL59009.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium nodulans
           ORS 2060]
          Length = 433

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/419 (71%), Positives = 351/419 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+DQDRIFTNLYG     L  +  RG WD    +LE+GRDWI+ E+K SGLRGRGGAGF
Sbjct: 1   MLSDQDRIFTNLYGFHSPGLDAARKRGAWDGTKFLLEQGRDWIVEEMKRSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH 
Sbjct: 61  STGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGE++ E+ +LQ AVDE Y + L+G ++  GY  D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEYVAEKHALQRAVDEAYEARLIGQDNVHGYPFDLYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV   ILRRGA W++G GR NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGAILRRGAEWFAGIGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE++ I F ELI++HCGGIRGGWDNLL VIPGGSSVP +PA Q+  
Sbjct: 241 LFCVSGHVNRPCNVEEALGIPFRELIDRHCGGIRGGWDNLLCVIPGGSSVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ + SGLGTAAV+V+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDTLRGLQSGLGTAAVMVLDKSTDIVSAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R+ +G AQKREID+L +V+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y
Sbjct: 361 VMLRMAEGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRY 419


>gi|148255908|ref|YP_001240493.1| NADH dehydrogenase I subunit F [Bradyrhizobium sp. BTAi1]
 gi|146408081|gb|ABQ36587.1| NADH dehydrogenase subunit F [Bradyrhizobium sp. BTAi1]
          Length = 441

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/420 (73%), Positives = 350/420 (83%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGL    L  +  RG WD    +++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFTNLYGLHDWGLEGARRRGSWDGTKGLIDKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+ AH
Sbjct: 61  PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLASFAMNAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G N+  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 ACYIYVRGEFIRERERLQAAIDQAYEANLIGKNNIHGWPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGASW++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGASWFAGIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR  IE RIDQY
Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLITHFRHEIEARIDQY 420


>gi|209885057|ref|YP_002288914.1| f subunit of NADH oxidoreductase (quinone) [Oligotropha
           carboxidovorans OM5]
 gi|209873253|gb|ACI93049.1| f subunit of NADH oxidoreductase (quinone) [Oligotropha
           carboxidovorans OM5]
          Length = 441

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/422 (71%), Positives = 350/422 (82%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L+ +  RG WD    I+EKGRDWI++E+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFKNLYGLDDWGLAGARRRGAWDGTKSIIEKGRDWIVSEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GAH
Sbjct: 61  PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+IYVRGEFIRERE LQAAVD+ Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 AAYIYVRGEFIREREHLQAAVDQAYEAKLIGKDNVHGWPFDLYVTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VE+++ ITF ELI+KH GG+RGGWDNLLAVIPGG+S P +PA   +
Sbjct: 241 KLFGISGHVNTPCVVEDALGITFRELIDKHAGGVRGGWDNLLAVIPGGASCPLIPAADCQ 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S LGTA  IVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 DLIMDFDGTRAVKSSLGTAGAIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLTRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 TR 422


>gi|182679348|ref|YP_001833494.1| NADH dehydrogenase I subunit F [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635231|gb|ACB96005.1| NADH-quinone oxidoreductase, F subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 436

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/419 (72%), Positives = 355/419 (84%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L  +M+RG WDN   +++KG+DWI+NE+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFTNLYGYGDWGLKGAMARGAWDNTKGLIDKGKDWILNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMR++PH LIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKADPARPSYLVVNADESEPGTCKDREIMRNDPHLLIEGCLIASFAMEAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+I ERE L+AAV + Y + L+G N+  G+  DI VHHGAGAYICGEETALLE
Sbjct: 121 CYIYIRGEYIFERERLEAAVAQAYEAKLVGKNNIHGWPFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PR+KPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FG +NN GTK
Sbjct: 181 SLEGKKGMPRMKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGAKNNAGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN  C VEE+MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVPC+PA ++  
Sbjct: 241 LFCISGHVNKRCNVEEAMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPCVPAHEIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ + SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGW+ R
Sbjct: 301 APMDFDTLRGLKSGLGTAAVIVMDKSTDIVRAIARLSHFYKHESCGQCTPCREGTGWLWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R+ +G AQKREID+L +V+  IEG TICALGDAAAWP+QGLI++FR  IE++IDQY
Sbjct: 361 VMTRMAEGRAQKREIDMLLDVTTRIEGHTICALGDAAAWPVQGLIRHFRSEIEKKIDQY 419


>gi|163850512|ref|YP_001638555.1| NADH dehydrogenase I subunit F [Methylobacterium extorquens PA1]
 gi|218529209|ref|YP_002420025.1| NADH dehydrogenase I subunit F [Methylobacterium chloromethanicum
           CM4]
 gi|240137577|ref|YP_002962048.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           [Methylobacterium extorquens AM1]
 gi|254560048|ref|YP_003067143.1| NADH-quinone oxidoreductase subunit F [Methylobacterium extorquens
           DM4]
 gi|163662117|gb|ABY29484.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium extorquens
           PA1]
 gi|218521512|gb|ACK82097.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium
           chloromethanicum CM4]
 gi|240007545|gb|ACS38771.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           [Methylobacterium extorquens AM1]
 gi|254267326|emb|CAX23158.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           [Methylobacterium extorquens DM4]
          Length = 433

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/419 (71%), Positives = 348/419 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYGL    L  +  RG WD    +L+ GRDWII+E+K SGLRGRGGAGF
Sbjct: 1   MLADQDRIFTNLYGLHSPGLEAAKKRGAWDGTKFLLDMGRDWIIDEMKGSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH 
Sbjct: 61  PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ E+ +LQ AVDE Y + L+G ++   Y  DI VHHGAGAYICGEETAL+E
Sbjct: 121 CYIYIRGEYVAEKFALQRAVDEAYEARLVGPSNIHDYPFDIYVHHGAGAYICGEETALIE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV  TILRRG +W++G G +NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + ITF ELI+KHCGG+RGGWDNLL  IPGGSSVP +PA Q+  
Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDKHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVGAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ R+  G AQKREID+L EV+K +EG TICALGDAAAWPIQGLI++FRP IE+RIDQY
Sbjct: 361 VLTRMAAGRAQKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDQY 419


>gi|298291842|ref|YP_003693781.1| NADH-quinone oxidoreductase, F subunit [Starkeya novella DSM 506]
 gi|296928353|gb|ADH89162.1| NADH-quinone oxidoreductase, F subunit [Starkeya novella DSM 506]
          Length = 435

 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/419 (71%), Positives = 348/419 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG     L  +  RG WD    +L+ GRD+II  +KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGHHDWGLDGARKRGSWDGTKLLLDAGRDFIIEHMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PH L+EGC+IA FA+GAH 
Sbjct: 61  PTGLKWSFMPKNNDGRPHYLVVNADESEPGTCKDREILRHDPHHLVEGCLIAGFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFI ERE LQAAVD+ Y +GL+G N+  G+D DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIVEREHLQAAVDQAYEAGLIGKNNVHGWDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W++G GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFAGIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PC VEE+M I F ELIEKH GG+RGGWDNLLA+IPGG+S P +PA Q   
Sbjct: 241 LFGISGHVNTPCIVEEAMGIPFKELIEKHGGGVRGGWDNLLAIIPGGASCPIIPADQCDD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DG + + S  GTA V+VMD++TD++KAI R+S F++HESCGQCTPCREGTGWM R
Sbjct: 301 LIMDFDGCRAVKSSFGTAGVLVMDKTTDVVKAIARISYFFRHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V++R+V G AQKREIDLL +V+  +EG TICALGDAAAWP+QGLI++FR  IE RIDQY
Sbjct: 361 VLDRMVAGRAQKREIDLLLQVTTQVEGHTICALGDAAAWPVQGLIRHFRGEIERRIDQY 419


>gi|115524534|ref|YP_781445.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisA53]
 gi|115518481|gb|ABJ06465.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 441

 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/422 (71%), Positives = 350/422 (82%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF N+YGL    L  +  RG WD    I++KG+DWIINE+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNVYGLGDWGLDGARRRGGWDGTKAIIDKGKDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++ASFA+GAH
Sbjct: 61  PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLASFAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A++YVRGEFIRERE LQAA+D+ Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 TAYVYVRGEFIRERERLQAAIDQAYEARLIGKDNIHGWPFDLYVTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFASIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA   +
Sbjct: 241 KLFGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCQ 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S  GTA VIVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+V+G A +REID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLSRMVEGRAHRREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|326387456|ref|ZP_08209065.1| NADH dehydrogenase I subunit F [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208112|gb|EGD58920.1| NADH dehydrogenase I subunit F [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 430

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 302/419 (72%), Positives = 352/419 (84%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG Q  +L+ + +RG WDN   +LE+GRD II E+K SGLRGRGGAGF 
Sbjct: 3   LADKDRIFTNLYGFQPWNLAAARARGDWDNTKALLERGRDAIIQEMKDSGLRGRGGAGFP 62

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D RP +LV+NADESEPG+CKDR+I+RH+PH L+EG ++A FA+GA  
Sbjct: 63  TGMKWSFMPKESRDGRPSFLVINADESEPGSCKDREIIRHDPHKLVEGALVAGFAMGARA 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+IRE E+L AAV E Y +GL+G N S  GYD D+ VH GAGAYICGEETA++
Sbjct: 123 AYIYIRGEYIREAETLFAAVREAYDAGLIGRNASGSGYDFDVFVHRGAGAYICGEETAMI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRGA+W+S FGR+NN+GT
Sbjct: 183 ESIEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRDNNKGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV+ PC VEE MSI F ELIE+HCGGIRGGWDNLLAVIPGGSSVP +P+ Q+ 
Sbjct: 243 KLFQISGHVDKPCVVEEEMSIPFRELIERHCGGIRGGWDNLLAVIPGGSSVPLVPSEQIM 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 303 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVMERL  G A   EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP IE RI +
Sbjct: 363 RVMERLRTGDASVEEIDMLFNVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAE 421


>gi|294011313|ref|YP_003544773.1| NADH dehydrogenase I chain F [Sphingobium japonicum UT26S]
 gi|292674643|dbj|BAI96161.1| NADH dehydrogenase I chain F [Sphingobium japonicum UT26S]
          Length = 438

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 301/419 (71%), Positives = 350/419 (83%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG Q  ++  +M RG WDN  K+LE G+D II  +KASGLRGRGGAGF 
Sbjct: 8   LADKDRIFTNVYGFQDWAIDAAMKRGDWDNTKKLLEIGQDEIIERIKASGLRGRGGAGFP 67

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A  
Sbjct: 68  TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRARA 127

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFI E + L AAV++ Y  G LG N+   GYD D+ VH GAGAYICGEETA +
Sbjct: 128 AYIYIRGEFIYEAKVLFAAVEQAYEKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 187

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRG++W+S FGRENN+GT
Sbjct: 188 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGSAWFSSFGRENNKGT 247

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEESM I+F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+ 
Sbjct: 248 KLFQISGHVNKPCVVEESMGISFKELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAQIM 307

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 308 DAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 367

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVMERL  G A + EID+L++V+K +EG TICALGDAAAWPIQGLI++FRP IE RI++
Sbjct: 368 RVMERLRTGDADQSEIDMLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRINE 426


>gi|296444799|ref|ZP_06886762.1| NADH-quinone oxidoreductase, F subunit [Methylosinus trichosporium
           OB3b]
 gi|296257747|gb|EFH04811.1| NADH-quinone oxidoreductase, F subunit [Methylosinus trichosporium
           OB3b]
          Length = 434

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/420 (73%), Positives = 352/420 (83%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG   + L+ +  RG WDN   +L  GRD II EVK SGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNLYGYGDRGLAGARKRGQWDNTKALLALGRDKIIQEVKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK     RP YLV+NADESEPGTCKDR+IMR++PHTL+EG ++ASFA+GAH
Sbjct: 61  STGLKWSFMPKTPDPARPSYLVINADESEPGTCKDREIMRNDPHTLVEGAMVASFAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFI ER +LQ AVDE YA+ L+G ++  GY  D+ VHHGAGAYICGEETAL+
Sbjct: 121 ACYIYVRGEFIAERVALQRAVDEAYAARLIGKDNVHGYPFDLYVHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWFAGIGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLFSISGHVN PC VEE+MSI F ELI++HCGG+RGG DNLLAVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFSISGHVNKPCNVEEAMSIPFRELIDRHCGGVRGGSDNLLAVIPGGSSVRLVPADQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++GSGLGTAAVIVMD+STDII+AI RL+ FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DCPMDFDSLVKLGSGLGTAAVIVMDKSTDIIRAIARLAYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L++VSK IEG TICALGDAAAWPIQGLI +FR  IE RID+Y
Sbjct: 361 RVVTRMAEGRAHKREIDMLFDVSKQIEGHTICALGDAAAWPIQGLINHFRGEIERRIDRY 420


>gi|188580280|ref|YP_001923725.1| NADH dehydrogenase I subunit F [Methylobacterium populi BJ001]
 gi|179343778|gb|ACB79190.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium populi
           BJ001]
          Length = 433

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 299/419 (71%), Positives = 348/419 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+DQDRIFTNLYG     L  +  RG WD    +LE GRDWII+E+K SGLRGRGGAGF
Sbjct: 1   MLSDQDRIFTNLYGQHSPGLDAAKKRGAWDGTKFLLEMGRDWIIDEMKGSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH 
Sbjct: 61  PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCMLASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ E+ +LQ AVDE Y + L+G ++   Y  DI VHHGAGAYICGEETAL+E
Sbjct: 121 CYIYIRGEYVAEKFALQRAVDEAYEARLVGPSNIHDYPFDIYVHHGAGAYICGEETALIE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV  TILRRG +W++G G +NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + ITF ELI++HCGG+RGGWDNLL  IPGGSSVP +PA Q+  
Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDRHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVGAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ R+  G AQKREID+L EV+K +EG TICALGDAAAWPIQGLI++FRP IE+RIDQY
Sbjct: 361 VLTRMAAGRAQKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDQY 419


>gi|300023448|ref|YP_003756059.1| NADH-quinone oxidoreductase, F subunit [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525269|gb|ADJ23738.1| NADH-quinone oxidoreductase, F subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 428

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 299/420 (71%), Positives = 349/420 (83%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYG     L  ++SRG WD     ++KG D+II+EVK SGLRGRGGAGF
Sbjct: 1   MLHDRDRIFRNLYGFHDARLKGAISRGAWDGTKFFIDKGHDYIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPG+CKDR+IMRH+PH LIEG ++A+FA+ AH 
Sbjct: 61  PTGLKWSFMPK-ADHRPSYLVINADESEPGSCKDREIMRHDPHLLIEGALLAAFAMRAHT 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           ++IYVRGE+IRERE+LQ A+DE YA+ L+G N+  G+D D+ VHHGAGAYICGEETA+LE
Sbjct: 120 SYIYVRGEYIREREALQRAIDEAYAAKLIGKNNVHGWDFDLYVHHGAGAYICGEETAMLE 179

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGKKGQPRLKPPFPANVGLYG PTT+NNVESIAV   ILRRGA+W++  G  NN GTK
Sbjct: 180 SIEGKKGQPRLKPPFPANVGLYGAPTTINNVESIAVTGEILRRGANWFAALGLPNNTGTK 239

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PCTVEE M I   ELI+KHCGGIRGGWDNLLAVIPGGSSV C+ A Q   
Sbjct: 240 LFQISGHVERPCTVEEEMGIPLKELIDKHCGGIRGGWDNLLAVIPGGSSVRCITAEQAMN 299

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L ++GSGLGTAA+IVMD+STDII AI R++ FYKHESCGQCTPCREGTGWM R
Sbjct: 300 VTMDFDALGKLGSGLGTAAIIVMDKSTDIIGAIRRIAYFYKHESCGQCTPCREGTGWMWR 359

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ER+ +G A+KREIDLL++V+K IEG TICALGDAAAWP+QGLIKNFRP+IEERIDQY 
Sbjct: 360 VLERMERGQAEKREIDLLFDVTKQIEGHTICALGDAAAWPVQGLIKNFRPVIEERIDQYQ 419


>gi|299135027|ref|ZP_07028218.1| NADH-quinone oxidoreductase, F subunit [Afipia sp. 1NLS2]
 gi|298590004|gb|EFI50208.1| NADH-quinone oxidoreductase, F subunit [Afipia sp. 1NLS2]
          Length = 441

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 301/422 (71%), Positives = 349/422 (82%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L  +  RG WD    I++KGRDWI++E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFKNLYGLHDWGLEGARRRGAWDGTKAIIDKGRDWIVSEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GAH
Sbjct: 61  PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+IY+RGEFIRERE LQAAVD+ Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 AAYIYIRGEFIREREHLQAAVDQAYEAKLIGKDNVHGWPFDLYVTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAAIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VE+++ ITF ELIEKH GGIRGGWDNLLA+IPGG+S P +PA    
Sbjct: 241 KLFGISGHVNTPCVVEDALGITFKELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAHDCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S LGTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSLGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLTRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 TR 422


>gi|312116350|ref|YP_004013946.1| NADH-quinone oxidoreductase, F subunit [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221479|gb|ADP72847.1| NADH-quinone oxidoreductase, F subunit [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 430

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 299/420 (71%), Positives = 350/420 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+D+DRIF NLYG     L  +  RG WDN   ILEKG+DWII E+KASGLRGRGGAGF
Sbjct: 1   MLSDKDRIFKNLYGQHDWGLKGARERGAWDNTKAILEKGQDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PH LIEG +I +FA+ A+ 
Sbjct: 61  STGMKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIIRHDPHLLIEGSLIGAFAMRANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGEFIRER+ LQAA+D+ Y + L+G ++  G+D DI VHHGAGAYICGEETA LE
Sbjct: 121 VYIYIRGEFIRERQRLQAAIDQAYEARLIGKDNINGWDCDIYVHHGAGAYICGEETAQLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGKKGQPRLKPPFPAN GL+G PTTVNNVESIAVVP ILRRGA+W++  G+ NN GTK
Sbjct: 181 SIEGKKGQPRLKPPFPANAGLWGAPTTVNNVESIAVVPDILRRGAAWFAALGKPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PC VEE M I+F EL++KH GG+RGGWDNLLA+IPGGSSVPC+PA     
Sbjct: 241 LFCISGHVERPCNVEEEMGISFRELVDKHAGGVRGGWDNLLAIIPGGSSVPCVPAHMCND 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+++GSGLGTAAVIVMD+STDI+KAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 LGMDFDSLRKVGSGLGTAAVIVMDKSTDIVKAISRLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V+G A+  EID+L++VSK IEG TICALGDAAAWP+QGLI++FR  +E RID +H
Sbjct: 361 VMERMVEGRAEHAEIDMLWDVSKQIEGHTICALGDAAAWPVQGLIRHFRHEMEARIDAFH 420


>gi|87200309|ref|YP_497566.1| NADH dehydrogenase I subunit F [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135990|gb|ABD26732.1| NADH dehydrogenase subunit F [Novosphingobium aromaticivorans DSM
           12444]
          Length = 428

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 304/422 (72%), Positives = 352/422 (83%), Gaps = 2/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG Q  +L+ + +RG WDN   ++E+G+D II E+KASGLRGRGGAGF 
Sbjct: 3   LQDKDRIFTNVYGFQPWNLAAARARGDWDNTKALMERGQDAIIEEIKASGLRGRGGAGFP 62

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA +A+ A  
Sbjct: 63  TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGYAMRARA 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+IRE ++L AAV E Y +GL+G N S  GYD D+ VH GAGAYICGEETA++
Sbjct: 123 AYIYIRGEYIREADTLFAAVQEAYDAGLIGKNASGSGYDFDVFVHRGAGAYICGEETAMI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRGASW+S FGRENN+GT
Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGASWFSSFGRENNKGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE MSI F ELIEKHCGGIRGG DNLLAVIPGGSSVP +PA ++ 
Sbjct: 243 KLFQISGHVNRPCVVEEEMSIPFSELIEKHCGGIRGGKDNLLAVIPGGSSVPLVPAAEIW 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 303 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMERL  G A   EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP IE RI + 
Sbjct: 363 RVMERLRTGDADVEEIDMLFNVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAEN 422

Query: 420 HR 421
            R
Sbjct: 423 AR 424


>gi|114799778|ref|YP_760453.1| NADH dehydrogenase I subunit F [Hyphomonas neptunium ATCC 15444]
 gi|114739952|gb|ABI78077.1| NADH-quinone oxidoreductase, F subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 435

 Score =  635 bits (1638), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 297/419 (70%), Positives = 348/419 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGL    L  +  RG W    ++LE+G DWI N++KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNLYGLHSPDLEAAKKRGAWHLTREMLEQGPDWICNQIKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+FMPK   DRPHYLVVNADESEPGTCKDR+I+RH+PH LIEGC++AS A+ AH 
Sbjct: 61  PTGLKWTFMPKEVRDRPHYLVVNADESEPGTCKDREILRHDPHLLIEGCMVASRAMRAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            ++Y+RGE+I ER +L+ AV E Y + L+G ++  G+D D+ VHHGAGAYICGEETALLE
Sbjct: 121 CYVYIRGEYINERHALEKAVKEAYEAKLIGKDNVNGWDFDLYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN GLYGCPTTVNNVESIAV PTILRRGA W++GFGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANAGLYGCPTTVNNVESIAVAPTILRRGAQWFAGFGRPNNAGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PC VEE MSITF +LIE HCGGIRGGW+NL AVIPGGSSVP +PA Q+  
Sbjct: 241 LFCISGHVNTPCNVEEEMSITFRDLIETHCGGIRGGWENLKAVIPGGSSVPMVPAEQIMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+++ SGLGTAAVIVMD+ TD+I+AI RL+ FYKHESCGQCTPCREGTGWM R
Sbjct: 301 AHMDFDTLRDLKSGLGTAAVIVMDKQTDLIRAIARLAYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ER+ +G A+  EID L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI QY
Sbjct: 361 VLERMARGEAEHDEIDTLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRHEIEDRITQY 419


>gi|149184631|ref|ZP_01862949.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. SD-21]
 gi|148831951|gb|EDL50384.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. SD-21]
          Length = 430

 Score =  635 bits (1637), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 301/422 (71%), Positives = 354/422 (83%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG Q   L  + +RG WD+   ++ +G D II EVKASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNLYGFQNWGLKAAEARGDWDDTKSLIARGHDNIIEEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG +++ +A+ A 
Sbjct: 61  PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVSGYAMRAR 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGE+IRE E LQAA+DE Y +GL+G N SK GYD D+ +H GAGAYICGEETA+
Sbjct: 121 AAYIYIRGEYIREAEVLQAAIDEAYDAGLIGKNASKSGYDFDVFLHRGAGAYICGEETAM 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTILRRGASW+S FGRENN+G
Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSSFGRENNKG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHVN PC VEE++SI F ELIEKHCGGI GG DNLLAVIPGGSSVP +PA Q+
Sbjct: 241 TKLFQISGHVNKPCVVEEALSIPFSELIEKHCGGITGGKDNLLAVIPGGSSVPLVPAEQI 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A MD+DGLK++GSGLGTA VIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 WDAPMDFDGLKDLGSGLGTAGVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R+MERL  G A   EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI++
Sbjct: 361 WRMMERLRTGDAAIEEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420

Query: 419 YH 420
           ++
Sbjct: 421 HN 422


>gi|294083716|ref|YP_003550473.1| NADH-quinone oxidoreductase subunit F [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663288|gb|ADE38389.1| NADH-quinone oxidoreductase, F subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 430

 Score =  634 bits (1636), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 301/421 (71%), Positives = 340/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTN+YG     L+ +  RG WDN   IL+ G   I+  +KASGLRGRGGAGF
Sbjct: 1   MLKDADRIFTNIYGWNDAMLAGAKKRGDWDNTAAILKLGHGEIVERMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+   DRPHYLVVNADESEPGTCKDRDI+RHEPH L+EGCV+A FA+ AH 
Sbjct: 61  PTGLKWSFMPQEVRDRPHYLVVNADESEPGTCKDRDIIRHEPHKLLEGCVVAGFAMRAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF+ E   LQAA+DE Y +GLLG N+ K G+D DI +H GAGAYICGEETALL
Sbjct: 121 AYIYIRGEFVNEARRLQAAIDEAYDAGLLGKNAAKSGWDFDIYLHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG+ W++G G+ENN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGSDWFAGLGKENNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE M I   EL+EKH GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 241 KLFCISGHVNKPCNVEEEMGIPLKELLEKHAGGVRGGWDNLLAVIPGGSSTPMMPKDTCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+E G+GLGTA VIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 301 TMTMDFDALREAGTGLGTAGVIVMDKSTDVVKAISRLSYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+MERLV+G A+  EID LYEV+K +EG TICALGDAAAWPIQGLIK+FRP IE RI   
Sbjct: 361 RMMERLVRGEAEPHEIDTLYEVTKQVEGHTICALGDAAAWPIQGLIKHFRPEIERRIAAR 420

Query: 420 H 420
           H
Sbjct: 421 H 421


>gi|86749697|ref|YP_486193.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris HaA2]
 gi|86572725|gb|ABD07282.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 441

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 302/422 (71%), Positives = 347/422 (82%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L  +  RG W+    I++KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWGLKGARRRGQWEGTKAIIDKGRDWIISEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IA  A+GAH
Sbjct: 61  PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIAGCAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  GY  D+ V HGAGAYICGEETALL
Sbjct: 121 VGYIYVRGEFIREREHLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGASW++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGASWFAGIGRANNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA    
Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S  GTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV++R+V G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLDRMVHGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|332185757|ref|ZP_08387504.1| NADH oxidoreductase (quinone), F subunit [Sphingomonas sp. S17]
 gi|332014115|gb|EGI56173.1| NADH oxidoreductase (quinone), F subunit [Sphingomonas sp. S17]
          Length = 436

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 303/420 (72%), Positives = 350/420 (83%), Gaps = 2/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG Q  ++  +M RG WDN   +LE G+D II+ +KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNLYGYQPWNVDAAMKRGDWDNTKALLELGQDKIIDVIKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK    DRP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A 
Sbjct: 61  PTGMKWSFMPKEPRPDRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGE+IRE E+L AAV E Y  G LG N+   GYD D+ VH GAGAYICGEETA+
Sbjct: 121 AAYIYIRGEYIREAETLFAAVAEAYDRGFLGKNACGSGYDFDVFVHRGAGAYICGEETAM 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRGA W+S FGRENN+G
Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAEWFSSFGRENNKG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHV+ PC VEESMSI+F ELIE+HCGGIRGGWDNLLAVIPGGSSVP +PA ++
Sbjct: 241 TKLFQISGHVDRPCVVEESMSISFRELIERHCGGIRGGWDNLLAVIPGGSSVPLVPAAEI 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 MDAPMDFDGLKAVGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RVMER+  G A   EID L++V+K +EG TICALGDAAAWPIQGLI++FRP +E RI +
Sbjct: 361 WRVMERMRTGDADVSEIDTLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMERRIRE 420


>gi|77463076|ref|YP_352580.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides 2.4.1]
 gi|77387494|gb|ABA78679.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Rhodobacter
           sphaeroides 2.4.1]
          Length = 431

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 291/417 (69%), Positives = 348/417 (83%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+Q +SL  +M+RG WD    +L  GRD II+ VKASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMQDRSLKGAMARGQWDGTADLLALGRDKIIDIVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTL+EG ++A FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPAYLVINADESEPATCKDREIMRHDPHTLVEGALLAGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE++RE+E+LQAA+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEYVREKEALQAAIDEAYDAGLIGQNAAKSGYDFDVYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAV+P ILRRG  W++ FGR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFASFGRPNNAGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC +EESMSI+  ELIEKH GG+RGGW NL AVIPGG+S P +PA Q  
Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MDYDG++E+ S  GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM
Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV+G A+  EID+L  V+K +EG TICALGDAAAWPIQGLI+++R  IE+RI
Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRI 417


>gi|91977350|ref|YP_570009.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisB5]
 gi|91683806|gb|ABE40108.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 441

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 301/422 (71%), Positives = 348/422 (82%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L  +  RG W+    I++KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWGLKGARRRGQWEGTKAIIDKGRDWIISEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A  A+GAH
Sbjct: 61  PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLVAGCAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 VGYIYVRGEFIREREHLQAAIDQAYEAKLIGKDNVHGFPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGASW++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGASWFAGIGRANNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA   +
Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCQ 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S  GTA VIVMD+STDI+ AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDIVAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV++R+V G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLDRMVHGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|85374157|ref|YP_458219.1| NADH dehydrogenase I subunit F [Erythrobacter litoralis HTCC2594]
 gi|84787240|gb|ABC63422.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter litoralis
           HTCC2594]
          Length = 430

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 296/422 (70%), Positives = 354/422 (83%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG Q   L  + +RG WD+   ++ +G + II E+K SGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNVYGFQDWGLKAAQARGDWDDTKALIARGEENIIEEIKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A 
Sbjct: 61  PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGE+IRE E+LQAA+DE Y +GL+G N S  G+D D+ +H GAGAYICGEETA+
Sbjct: 121 AAYIYIRGEYIREAETLQAAIDEAYDAGLIGKNASGSGFDYDVFLHRGAGAYICGEETAM 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTILRRG +W++ FGRENN G
Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGNWFASFGRENNHG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHV  PC VEE+MSI F+ELIEKHCGGI GGWDNLLAVIPGGSSVP +PA Q+
Sbjct: 241 TKLFQISGHVEKPCVVEEAMSIPFEELIEKHCGGITGGWDNLLAVIPGGSSVPLVPAEQI 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
           R A MD+DGLK++GSGLGTAAVIVMD+STDI++AI R+S FYKHESCGQCTPCREGTGWM
Sbjct: 301 RQAPMDFDGLKDVGSGLGTAAVIVMDKSTDIVRAISRISYFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R+MERL  G A   EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI++
Sbjct: 361 WRMMERLRTGDAAIEEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420

Query: 419 YH 420
           ++
Sbjct: 421 HN 422


>gi|126461948|ref|YP_001043062.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides ATCC 17029]
 gi|221638932|ref|YP_002525194.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides KD131]
 gi|332557949|ref|ZP_08412271.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides WS8N]
 gi|126103612|gb|ABN76290.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221159713|gb|ACM00693.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides
           KD131]
 gi|332275661|gb|EGJ20976.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides WS8N]
          Length = 431

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 291/417 (69%), Positives = 348/417 (83%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+Q +SL  +M+RG WD    +L  GRD II+ VKASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMQDRSLKGAMARGQWDGTADLLALGRDKIIDIVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTL+EG ++A FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPAYLVINADESEPATCKDREIMRHDPHTLVEGALLAGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE++RE+E+LQAA+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEYVREKEALQAAIDEAYDAGLIGRNAAKSGYDFDVYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAV+P ILRRG  W++ FGR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFASFGRPNNAGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC +EESMSI+  ELIEKH GG+RGGW NL AVIPGG+S P +PA Q  
Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MDYDG++E+ S  GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM
Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV+G A+  EID+L  V+K +EG TICALGDAAAWPIQGLI+++R  IE+RI
Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRI 417


>gi|27380023|ref|NP_771552.1| NADH dehydrogenase I subunit F [Bradyrhizobium japonicum USDA 110]
 gi|27353177|dbj|BAC50177.1| NADH ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum
           USDA 110]
          Length = 441

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 307/420 (73%), Positives = 347/420 (82%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L  +  RG WD    I++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFKNLYGLHDWGLEGARRRGAWDGTKNIIDKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH
Sbjct: 61  PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASCAMNAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  G+  DI V HGAGAYICGEETALL
Sbjct: 121 ACYIYVRGEFIREREHLQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR  IE RIDQY
Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420


>gi|39936010|ref|NP_948286.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris CGA009]
 gi|192291665|ref|YP_001992270.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris TIE-1]
 gi|39649864|emb|CAE28386.1| NADH-ubiquinone dehydrogenase chain F [Rhodopseudomonas palustris
           CGA009]
 gi|192285414|gb|ACF01795.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 441

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 300/422 (71%), Positives = 348/422 (82%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL   +L  +  RG W+    I++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWTLKGARRRGGWEGTKAIIDKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A  A+GAH
Sbjct: 61  PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLAGCAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  GY  D+ V HGAGAYICGEETALL
Sbjct: 121 TGYIYVRGEFIRERERLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFSSIGRANNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA    
Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S  GTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV++R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLDRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|294677060|ref|YP_003577675.1| NADH-quinone oxidoreductase subunit F [Rhodobacter capsulatus SB
           1003]
 gi|7387959|sp|O07948|NUOF_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|1938240|emb|CAA71232.1| complex I 51kDa subunit [Rhodobacter capsulatus]
 gi|2182080|emb|CAA71013.1| NADH:ubiquinone oxidoreductase 47 kD complex I subunit [Rhodobacter
           capsulatus]
 gi|3282565|gb|AAC24991.1| NUOF [Rhodobacter capsulatus]
 gi|294475880|gb|ADE85268.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter capsulatus SB
           1003]
          Length = 431

 Score =  631 bits (1628), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 295/417 (70%), Positives = 346/417 (82%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTN+YG+  +SL  +M+RGHWD    IL  GRDWII +VKASGLRGRGGAGF
Sbjct: 1   MLNDHDRIFTNIYGMHDRSLKGAMARGHWDGTAAILGNGRDWIIEQVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP +LV+NADESEPGTCKDR+IMRH+PHTLIEG +IA FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPSFLVINADESEPGTCKDREIMRHDPHTLIEGALIAGFAMGARA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE++RE+E+LQAA+DECY +GL+G N+ +  YD D+ +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEYVREKEALQAAIDECYEAGLIGKNACRSDYDFDVYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG +W++G GR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGGAWFAGIGRPNNTGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC VEE+MSI+  ELIEKH GG+RGGW NL AVIPGG+S P +PA    
Sbjct: 241 KLFAMSGHVNTPCVVEEAMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPVIPAHLCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMDYDG++E  S  GTA +IVMD+ TDIIKAI RLS F+KHESCGQCTPCREGT WM 
Sbjct: 301 DAIMDYDGMREKQSSFGTACLIVMDQQTDIIKAIARLSKFFKHESCGQCTPCREGTSWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVMERLV G A+  EID+L+ V+K +EG TICALGDAAAWPIQGLI+++R  IE+RI
Sbjct: 361 RVMERLVTGEAEVEEIDMLFSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRI 417


>gi|296283840|ref|ZP_06861838.1| NADH dehydrogenase I subunit F [Citromicrobium bathyomarinum JL354]
          Length = 431

 Score =  631 bits (1628), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 300/417 (71%), Positives = 348/417 (83%), Gaps = 2/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG Q   L  + +RG WD+   +L KG+D II+++KASGLRGRGGAGF 
Sbjct: 3   LQDKDRIFTNLYGFQDWGLKAAQARGDWDDTKALLAKGQDSIIDDMKASGLRGRGGAGFP 62

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D RP +LV+NADESEPG+CKDR+IMRH+PH LIEG ++A FA+ A  
Sbjct: 63  TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIMRHDPHKLIEGALVAGFAMRARA 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+IRE E+LQ A+DE Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+
Sbjct: 123 AYIYIRGEYIREAETLQKAIDEAYDAGLIGKNACGSGYDYDVFLHRGAGAYICGEETALI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTILRRG SW++ FGRE N GT
Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPSWFASFGREKNDGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE MSI F ELIE+HCGG+RGGWDNLLAVIPGGSSVP +PA Q+ 
Sbjct: 243 KLFQISGHVEKPCVVEEEMSIPFRELIERHCGGVRGGWDNLLAVIPGGSSVPLVPAEQIM 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGLKE+GSGLGTAAVIVMD+STDI++AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 303 DAPMDFDGLKELGSGLGTAAVIVMDKSTDIVRAISRISYFYKHESCGQCTPCREGTGWMW 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RL  G A   EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP +E RI
Sbjct: 363 RVMKRLETGDADIDEIDMLHTVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRI 419


>gi|114764726|ref|ZP_01443911.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Pelagibaca
           bermudensis HTCC2601]
 gi|114542926|gb|EAU45947.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Roseovarius
           sp. HTCC2601]
          Length = 431

 Score =  631 bits (1627), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 291/417 (69%), Positives = 350/417 (83%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L  +  RGHWD    IL KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNLYGMHDRTLQGAKKRGHWDGTAGILGKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGE+IRERE+LQAA+DE Y +G++G N+   G+D D+ +HHGAGAYICGEET+LL
Sbjct: 121 SYIYIRGEYIREREALQAAIDEAYDAGMIGKNACGSGWDFDLYLHHGAGAYICGEETSLL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGASW+SGFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSGFGRKNNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL  ++GHVN P   EE MS++  E+IEKH GGIRGGWDNL A+IPGG+S P LP  ++ 
Sbjct: 241 KLMGLTGHVNTPSVFEEEMSLSVREIIEKHGGGIRGGWDNLKAIIPGGASCPILPKDKLE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AI D+D ++E  S  GT  +IVMD++TD++KA+WRLS F+KHESCGQCTPCREGTGWMM
Sbjct: 301 DAIFDFDWMRENKSSFGTGCMIVMDQNTDVVKAVWRLSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV+G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI
Sbjct: 361 RVMDRLVRGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFREEIEDRI 417


>gi|316933898|ref|YP_004108880.1| NADH-quinone oxidoreductase subunit F [Rhodopseudomonas palustris
           DX-1]
 gi|315601612|gb|ADU44147.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 441

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 300/422 (71%), Positives = 347/422 (82%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL   +L  +  RG W+    I++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWTLKGARRRGAWEGTKAIIDKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A  A+GAH
Sbjct: 61  PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLAGCAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  GY  D+ V HGAGAYICGEETALL
Sbjct: 121 TGYIYVRGEFIRERERLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PC VEE+M I F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA    
Sbjct: 241 KLYGISGHVNTPCVVEEAMGIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S  GTA VIVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV++R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLDRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|146278038|ref|YP_001168197.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides ATCC 17025]
 gi|145556279|gb|ABP70892.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 431

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 292/417 (70%), Positives = 347/417 (83%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL  +M+RG WD    +L  GRD II+ VK SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMGDRSLKGAMARGQWDGTADLLALGRDRIIDIVKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +++ FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALLSGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEYIREKEALQAAIDEAYDAGLIGRNAAKSGYDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAV+P ILRRG  W++GFGR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFAGFGRPNNAGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC +EESMSI+  ELIEKH GG+RGGW NL AVIPGG+S P +PA Q  
Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MDYDG++E+ S  GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM
Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV+G A+  EID+L  V+K +EG TICALGDAAAWPIQGLI+++R  IE+RI
Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRI 417


>gi|90423909|ref|YP_532279.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisB18]
 gi|90105923|gb|ABD87960.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 441

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/422 (71%), Positives = 344/422 (81%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYG     L  +  RG WD    I+EKGRDWIINE+K SGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGQGDWGLEGARRRGSWDGTKAIIEKGRDWIINEMKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GA 
Sbjct: 61  PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHVLVEGCLLASFAMGAK 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAAVD+ Y + L+G ++  G+  ++ V HGAGAYICGEETALL
Sbjct: 121 VCYIYVRGEFIREREHLQAAVDQAYEAKLIGQDNIHGWPFELYVTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE+M I F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA    
Sbjct: 241 KLFGISGHVNTPCVVEEAMGIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCG 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S LGTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSLGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLSRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|103486791|ref|YP_616352.1| NADH dehydrogenase I subunit F [Sphingopyxis alaskensis RB2256]
 gi|98976868|gb|ABF53019.1| NADH-quinone oxidoreductase, F subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 430

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 298/419 (71%), Positives = 350/419 (83%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG Q  +L  + +RG WDN   ++++G+D II E+KASGLRGRGGAGF 
Sbjct: 3   LADKDRIFTNLYGFQPWNLKAAQARGDWDNTRDLMKRGQDAIIEEIKASGLRGRGGAGFP 62

Query: 62  TGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG+KWSFMPK   +DRP +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA +A+ A  
Sbjct: 63  TGLKWSFMPKEPRADRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGYAMRARA 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFIRE E+L AAV E Y +GLLG N+ K GYD D+ VH GAGAYICGEETA++
Sbjct: 123 AYIYIRGEFIREAETLFAAVQEAYDAGLLGKNAAKSGYDFDVFVHRGAGAYICGEETAMI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++ FGRENN+GT
Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAPWFASFGRENNKGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ 
Sbjct: 243 KLFQISGHVNKPCVVEEEMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAEIM 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+DGLK +GSGLGTAA IVMD+STD+++AI R+S FYKHESCG CTPCREGTGWM 
Sbjct: 303 DCPMDFDGLKAVGSGLGTAAAIVMDKSTDVVQAISRISYFYKHESCGHCTPCREGTGWMW 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVMERL  G A   EID L++V+K +EG TICALGDAAAWPIQGLI++FRP +E RI +
Sbjct: 363 RVMERLRTGDADISEIDTLFDVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIRE 421


>gi|260428309|ref|ZP_05782288.1| NADH oxidoreductase (quinone), f subunit [Citreicella sp. SE45]
 gi|260422801|gb|EEX16052.1| NADH oxidoreductase (quinone), f subunit [Citreicella sp. SE45]
          Length = 431

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 291/417 (69%), Positives = 347/417 (83%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L  +  RGHWD    I+ KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNLYGMHDRTLEGAKKRGHWDGTADIIGKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+IRE+E+LQAA+DE Y  G++G N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 AYIYIRGEYIREKEALQAAIDEAYDKGMIGRNACGTGWDFDLYLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGASW+SGFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGASWFSGFGRKNNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +++GHVN PC  EE MS++  E+IEKH GGIRGGWDNL A+IPGG+S P LP   + 
Sbjct: 241 KLMALTGHVNTPCVFEEEMSLSVREIIEKHGGGIRGGWDNLKAIIPGGASCPVLPKHALE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AI D+D ++E  S  GT  +IVMD S D++KA+WRLS F+KHESCGQCTPCREGTGWMM
Sbjct: 301 DAIFDFDWMRENRSSFGTGCMIVMDNSVDVVKAVWRLSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM+RLV G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI
Sbjct: 361 RVMDRLVTGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRI 417


>gi|315499794|ref|YP_004088597.1| NADH-quinone oxidoreductase, f subunit [Asticcacaulis excentricus
           CB 48]
 gi|315417806|gb|ADU14446.1| NADH-quinone oxidoreductase, F subunit [Asticcacaulis excentricus
           CB 48]
          Length = 437

 Score =  628 bits (1620), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 301/419 (71%), Positives = 343/419 (81%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYG     L  +  RG W+    IL  GRDWII  VK SGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGFHDWGLEGAKQRGCWNATRDILSYGRDWIITNVKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK   DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH 
Sbjct: 64  STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ ERE L+AA+ + Y + L+G N+  G+D DI VHHG GAYICGEETALLE
Sbjct: 124 CYIYIRGEYVFERERLEAAIKQAYEAKLVGKNNVHGWDFDIYVHHGGGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVV TILRRGA+W++GFG +NN GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAAWFAGFGAQNNTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q   
Sbjct: 244 LFCISGHVERPCNVEEAMSIPFRQLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCEN 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+ +GSGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 304 MPMDFDTLRGLGSGLGTAAVIVMDKSTDLIKAIARLSYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+ KG A  +EID+L +V+K +EG TICALGDAAAWP+QGLI++FR  IE+RI  Y
Sbjct: 364 VMERMAKGDADPKEIDILLDVTKQVEGHTICALGDAAAWPVQGLIRHFRHEIEDRIALY 422


>gi|302383053|ref|YP_003818876.1| NADH-quinone oxidoreductase, F subunit [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193681|gb|ADL01253.1| NADH-quinone oxidoreductase, F subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 437

 Score =  628 bits (1619), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 299/426 (70%), Positives = 346/426 (81%), Gaps = 2/426 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYGLQ   L  + +RG W+    +L+ GRDW+I  VK SGLRGRGGAGF
Sbjct: 4   LLEDKDRIFTNLYGLQDWGLEGAKNRGCWNATKDMLDMGRDWLITNVKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK   DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH 
Sbjct: 64  STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ ERE ++AAV + Y + L+G N+  G+D D+ +HHGAGAYICGEETALLE
Sbjct: 124 CYIYLRGEYVLERERMEAAVKQAYEARLIGKNNIHGWDFDVYIHHGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAEWFAGFGRPNNTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L SISGHVN PC VEE+MSI   +LIE HCGG+RGGWDNL A+IPGG SVP +       
Sbjct: 244 LMSISGHVNRPCNVEEAMSIPLRQLIEDHCGGVRGGWDNLKAIIPGGVSVPLITREMSEV 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D L+EM SGLGTAAV+VMD STD++KAI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 304 ALMDFDSLREMKSGLGTAAVVVMDNSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419
           V+ER+  G A   EID+L EVS  IEG TICALGDAAAWP+QGLI++FR  IE+RI QY 
Sbjct: 364 VLERMAVGEADPGEIDMLLEVSTQIEGHTICALGDAAAWPVQGLIRHFRHEIEDRISQYR 423

Query: 420 -HRCNF 424
             R NF
Sbjct: 424 TRRANF 429


>gi|85717024|ref|ZP_01047986.1| NADH-quinone oxidoreductase, F subunit [Nitrobacter sp. Nb-311A]
 gi|85696148|gb|EAQ34044.1| NADH-quinone oxidoreductase, F subunit [Nitrobacter sp. Nb-311A]
          Length = 441

 Score =  627 bits (1618), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/420 (71%), Positives = 346/420 (82%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L+ +  RG WD    I++KGRDWI++E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTKAIVDKGRDWIVSEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A   +GAH
Sbjct: 61  PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGEFIRERE LQAA+DE Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 AGYIYIRGEFIRERERLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAAIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+M ITF ELI+ HCGGIRGGW+NL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCISGHVERPCNVEEAMGITFRELIDTHCGGIRGGWNNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR  IE RIDQY
Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420


>gi|75676073|ref|YP_318494.1| NADH dehydrogenase I subunit F [Nitrobacter winogradskyi Nb-255]
 gi|74420943|gb|ABA05142.1| NADH dehydrogenase subunit F [Nitrobacter winogradskyi Nb-255]
          Length = 441

 Score =  627 bits (1618), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/420 (71%), Positives = 346/420 (82%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L+ +  RG WD    I+ KGRDWI++E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTKAIVGKGRDWIVSEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A   +GAH
Sbjct: 61  PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGEFIRERE LQAA+DE Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 AGYIYIRGEFIRERERLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGHV  PC VEE+M ITF ELI+ HCGGIRGGW NL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCVSGHVERPCNVEEAMGITFRELIDTHCGGIRGGWGNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR  IEERIDQY
Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY 420


>gi|254420908|ref|ZP_05034632.1| NADH oxidoreductase (quinone), F subunit [Brevundimonas sp. BAL3]
 gi|196187085|gb|EDX82061.1| NADH oxidoreductase (quinone), F subunit [Brevundimonas sp. BAL3]
          Length = 437

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 297/426 (69%), Positives = 348/426 (81%), Gaps = 2/426 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYG Q  +L  + +RG W+    +L+ GRDWIIN VKASGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGFQDWTLDGAKTRGAWNATKDMLDLGRDWIINNVKASGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK   DRPHYLVVNADESEPGTCKDR+IMRH+P  LIEGC+IASFA+ AH 
Sbjct: 64  STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPQLLIEGCLIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ ERE ++AAV + Y + L+G ++  G+D D+ +HHGAGAYICGEETALLE
Sbjct: 124 CYIYLRGEYVLERERMEAAVKQAYEARLIGKDNVHGWDFDVYIHHGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAGWFAGFGRPNNTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L +ISGHVN PC VEE+MSI   +L+E+HCGG+RGGWDNL A+IPGGSSVP +       
Sbjct: 244 LMAISGHVNAPCVVEEAMSIPLRQLLEEHCGGVRGGWDNLKAIIPGGSSVPLITREMSET 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D L+EM SGLGTAAVIVMD STD++KAI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 304 ALMDFDSLREMRSGLGTAAVIVMDNSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419
           V+ER+  G A   EIDLL +V+  +EG TICALGDAAAWP+QGLI++FR  IEERI  Y 
Sbjct: 364 VLERMSVGEADPSEIDLLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRHEIEERIANYR 423

Query: 420 -HRCNF 424
             R NF
Sbjct: 424 SRRANF 429


>gi|92117738|ref|YP_577467.1| NADH dehydrogenase I subunit F [Nitrobacter hamburgensis X14]
 gi|91800632|gb|ABE63007.1| NADH dehydrogenase subunit F [Nitrobacter hamburgensis X14]
          Length = 441

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 303/420 (72%), Positives = 346/420 (82%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L+ +  RG WD    I++KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTRTIVDKGRDWIISEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D RP YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A   +GAH
Sbjct: 61  PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGEFIRERE LQAA+DE Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 AGYIYIRGEFIREREHLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+M ITF ELI+ HCGGIRGGW+NL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCISGHVERPCNVEEAMGITFRELIDTHCGGIRGGWNNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLGKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+  G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR  IE RIDQY
Sbjct: 361 RVLTRMADGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420


>gi|307293265|ref|ZP_07573111.1| NADH-quinone oxidoreductase, F subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306881331|gb|EFN12547.1| NADH-quinone oxidoreductase, F subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 438

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 299/419 (71%), Positives = 346/419 (82%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG Q   +  +M RG WDN  K++E G+D II  +KASGLRGRGGAGF 
Sbjct: 8   LADKDRIFTNVYGFQDWGIDAAMKRGDWDNTRKLMEIGQDEIIERIKASGLRGRGGAGFP 67

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA FA+ A  
Sbjct: 68  TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIVRHDPHKLIEGALIAGFAMRARA 127

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFI E + L AAV++ Y  G LG N+   GYD D+ VH GAGAYICGEETA +
Sbjct: 128 AYIYIRGEFIYEAKVLFAAVEQAYEKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 187

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRG+ W+S FGRENN+GT
Sbjct: 188 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVGPTILRRGSEWFSSFGRENNKGT 247

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEESM I+F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ 
Sbjct: 248 KLFQISGHVNKPCVVEESMGISFKELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAKEIM 307

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 308 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 367

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVMERL  G A   EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP IE RI++
Sbjct: 368 RVMERLRSGDADISEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRINE 426


>gi|288958984|ref|YP_003449325.1| NADH dehydrogenase I chain F [Azospirillum sp. B510]
 gi|288911292|dbj|BAI72781.1| NADH dehydrogenase I chain F [Azospirillum sp. B510]
          Length = 429

 Score =  625 bits (1611), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 295/421 (70%), Positives = 337/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG Q   L  +  RG WDN   IL  GR+WII +VK SGLRGRGGAGF
Sbjct: 1   MLRDEDRIFTNLYGFQDFGLDGARKRGDWDNTASILANGREWIIEQVKQSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  +D+P YLV+NADE EPGTCKDRDI+RH+PH LIEGC+IA FAIGA  
Sbjct: 61  STGMKWSFMPKNVTDKPVYLVINADEGEPGTCKDRDILRHDPHKLIEGCLIAGFAIGASA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE YA+GL+G N+   GYD D+ +H GAGAYICGEETAL+
Sbjct: 121 CYIYIRGEFYNEGSNVQRAIDEAYAAGLIGKNACGTGYDYDVYIHRGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKGQPR KPPFPA  GLY CPTTVNNVESIAVVPTILRRGASW++G GR  N GT
Sbjct: 181 ESIEGKKGQPRNKPPFPAQAGLYSCPTTVNNVESIAVVPTILRRGASWFAGLGRPKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE M I   ELIEKH GG+RGGWDNLL +IPGGSSVP LP     
Sbjct: 241 KLFCISGHVNNPCNVEEEMGIPLKELIEKHAGGVRGGWDNLLGIIPGGSSVPVLPKSICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E+ SGLGTAAVIVMD+STDI+KAI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 301 TVLMDFDSLREVQSGLGTAAVIVMDKSTDIVKAIARLSSFYAHESCGQCTPCREGTGWMS 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+R+V G A+  EID+L +V+K +EG TICALGDAAAWPIQGL ++FRP +E RI  Y
Sbjct: 361 RVMQRMVTGNARLEEIDMLLQVTKQVEGHTICALGDAAAWPIQGLFRHFRPEVERRIQAY 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|145354210|ref|XP_001421384.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581621|gb|ABO99677.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 449

 Score =  624 bits (1609), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 292/419 (69%), Positives = 345/419 (82%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  +M RG W N   ++E G DWII+E+KASGLRGRGGAGF 
Sbjct: 21  LKDQDRIFTNLYGKHDPFLKGAMKRGDWHNTKSLVELGADWIISEMKASGLRGRGGAGFP 80

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMP+V   RP+YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA  A+ A  A
Sbjct: 81  SGLKWSFMPRVSDGRPNYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAA 140

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A+ ECYA+G LG N+   G D D+ +H+GAGAYICGEETAL+E
Sbjct: 141 YIYIRGEYVNERLALERALAECYAAGYLGKNACGSGMDFDVNIHYGAGAYICGEETALIE 200

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRGA W++ FGR+NN GTK
Sbjct: 201 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVAPTILRRGADWFASFGRKNNAGTK 260

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   +LIEKHCGG+RGGWDNLLAVIPGGSSVP +P      
Sbjct: 261 LFCISGHVNNPCTVEEEMSIPLRDLIEKHCGGVRGGWDNLLAVIPGGSSVPLIPKNVCED 320

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LKE  SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 321 VLMDFDSLKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTSWLYN 380

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M+R+VKG A+  EID L E++K IEG TICALGDAAAWPIQG+I++FRPL+EERI Q+
Sbjct: 381 IMQRMVKGDARLEEIDTLQELTKQIEGHTICALGDAAAWPIQGVIRHFRPLLEERISQF 439


>gi|329850724|ref|ZP_08265569.1| NADH oxidoreductase quinone, F subunit [Asticcacaulis biprosthecum
           C19]
 gi|328841039|gb|EGF90610.1| NADH oxidoreductase quinone, F subunit [Asticcacaulis biprosthecum
           C19]
          Length = 437

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 301/419 (71%), Positives = 339/419 (80%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYG     L  +  RG W+    IL  G  WII+ VK SGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGFHDWGLEGAKQRGCWNATRDILSYGAPWIIDNVKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK   DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH 
Sbjct: 64  STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+I ERE L+AAV + Y + L+G N+  G+D D+ VHHGAGAYICGEETALLE
Sbjct: 124 CYIYLRGEYILERERLEAAVKQAYEAKLIGKNNVHGWDFDVYVHHGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVV TILRRGA+W++ FG  NN GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGSGLYGCPTTVNNVESIAVVGTILRRGAAWFASFGAPNNTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q   
Sbjct: 244 LFCISGHVERPCNVEEAMSIPFRKLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCEN 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+ + SGLGTAAVIVMD+STD+I+AI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 304 LAMDFDTLRNLKSGLGTAAVIVMDKSTDLIRAIARLSYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+VKG A+  EID L EV+  +EG TICALGDAAAWPIQGLI++FRP IE RI  Y
Sbjct: 364 VMERMVKGDAEPSEIDTLLEVTTQVEGHTICALGDAAAWPIQGLIRHFRPEIEARIAAY 422


>gi|304319950|ref|YP_003853593.1| NADH dehydrogenase I, F subunit [Parvularcula bermudensis HTCC2503]
 gi|303298853|gb|ADM08452.1| NADH dehydrogenase I, F subunit [Parvularcula bermudensis HTCC2503]
          Length = 453

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 293/419 (69%), Positives = 340/419 (81%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGL+   L  +  RG W+    IL+ G DW+I +VK SGLRGRGGAGF
Sbjct: 22  MLQDKDRIFTNLYGLKDPFLEGAKDRGAWNGTKDILDMGIDWVIQQVKDSGLRGRGGAGF 81

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK   +RPHYLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 82  PTGLKWSFMPKEVGERPHYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMRAHA 141

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+I ERE LQ A+DE YA+ L+G ++  GYD D+ + HGAGAYICGEETALLE
Sbjct: 142 CYIYIRGEYIFEREQLQKAIDEAYAAKLIGKDNVHGYDFDLYLSHGAGAYICGEETALLE 201

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTI+RRGA W+  FGRENN GTK
Sbjct: 202 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTIIRRGADWFKRFGRENNHGTK 261

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F ISGHVN PC VEE MSI    LI+ HCGG+RGGWDNL AVIPGGSSV CLP      
Sbjct: 262 VFCISGHVNKPCNVEEEMSIPLKTLIDTHCGGVRGGWDNLKAVIPGGSSVRCLPKSICDD 321

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+E  SGLGTAAVIVMD+STD++KAI R++ FYKHESCGQCTPCREGTGWM R
Sbjct: 322 VLMDFDALREHKSGLGTAAVIVMDKSTDMVKAIARIAHFYKHESCGQCTPCREGTGWMWR 381

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ R+ +G A+  EID L +V+  +EG TICALGDAAAWP+QGLI++FR  IEE+I  Y
Sbjct: 382 VLVRMSRGEAEMWEIDKLLDVAGQVEGHTICALGDAAAWPVQGLIQHFRHEIEEKITAY 440


>gi|94496476|ref|ZP_01303053.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas sp. SKA58]
 gi|94424222|gb|EAT09246.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas sp. SKA58]
          Length = 445

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/419 (70%), Positives = 342/419 (81%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG Q   +  +M RG WDN   +LE G+D IIN +KASGLRGRGGAGF 
Sbjct: 17  LADKDRIFTNVYGFQDWGIDAAMKRGDWDNTKALLEIGQDEIINRIKASGLRGRGGAGFP 76

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D RP +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA FA+ A  
Sbjct: 77  TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGFAMRARA 136

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFI E + L AAV++ YA G LG N+   GYD D+ VH GAGAYICGEETA +
Sbjct: 137 AYIYIRGEFIYEAKVLFAAVEQAYAKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRR   W++  GR NN GT
Sbjct: 197 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVGPTILRRSPEWFASIGRPNNLGT 256

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE+M I F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ 
Sbjct: 257 KLFQISGHVNKPCVVEEAMGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAKEIM 316

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 317 DAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 376

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVMERL  G A + EID+L++V+K +EG TICALGDAAAWPIQGLI++FRP IE RI +
Sbjct: 377 RVMERLRTGDADQSEIDMLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAE 435


>gi|148555895|ref|YP_001263477.1| NADH dehydrogenase I subunit F [Sphingomonas wittichii RW1]
 gi|148501085|gb|ABQ69339.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas wittichii RW1]
          Length = 432

 Score =  618 bits (1593), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 296/420 (70%), Positives = 345/420 (82%), Gaps = 2/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG Q  +L  +  RG WD+   +L +G D II ++KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFTNVYGFQPWNLEAARKRGDWDDTKALLARGPDQIIEDIKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK     RP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A 
Sbjct: 61  PTGMKWSFMPKEPKPGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEFI E + L AAV+E YA+GLLG N+   GYD D+ VH GAGAYICGEETA 
Sbjct: 121 AAYIYIRGEFIYEAKVLFAAVEEAYAAGLLGKNAAGSGYDFDVFVHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRGA+W++G GRE N+G
Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAAWFAGIGREGNKG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHVN PC VEE+M I F ELI++H GGIRGGWDNLLAVIPGGSSVP +PA Q+
Sbjct: 241 TKLFQISGHVNKPCVVEEAMGIPFRELIDRHAGGIRGGWDNLLAVIPGGSSVPLVPAAQI 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 MDAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RVMERL  G A+  EID L +V+K +EG TICALGDAAAWPIQGL+++FRP +E RI +
Sbjct: 361 WRVMERLRTGEARIDEIDTLLDVTKQVEGHTICALGDAAAWPIQGLLRHFRPEVERRIRE 420


>gi|114327961|ref|YP_745118.1| NADH dehydrogenase I subunit F [Granulibacter bethesdensis CGDNIH1]
 gi|114316135|gb|ABI62195.1| NADH-quinone oxidoreductase chain F [Granulibacter bethesdensis
           CGDNIH1]
          Length = 438

 Score =  617 bits (1592), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 293/422 (69%), Positives = 343/422 (81%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L  +++RG WD    IL +GRD II ++K SGLRGRGGAGF
Sbjct: 1   MLNDRDRIFTNLYGEHDWGLKGALARGDWDGTAAILARGRDAIIEDIKISGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PH L+EGC+IA+FA+GAH 
Sbjct: 61  PTGMKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPHKLVEGCLIAAFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IYVRGEF  E   LQAA+D+ Y +GL+G N+   G+D D+ VH GAGAYICGEETAL+
Sbjct: 121 AYIYVRGEFYNESCHLQAAIDQAYEAGLIGKNACGSGWDFDLYVHRGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG +W++  GR  N GT
Sbjct: 181 ESIEGKKGMPRLKPPFPAGVGLYGCPTTVNNVESIAVCPTILRRGGAWFASLGRPKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLFSISGHVN PC VEE + I   EL+E++ GG+RGGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KLFSISGHVNKPCNVEEELGIPLRELLERYAGGVRGGWDNLLAVIPGGSSVPLLPKSICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E  SGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DVLMDFDSLREQRSGLGTAAVIVMDKSTDVIKAIARLSHFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M R+V+G A   EID+L +V++ +EG TICALGDAAAWP+QGLI++FRP+IE+RI  Y
Sbjct: 361 RIMNRMVEGRADLEEIDMLEQVTRQVEGHTICALGDAAAWPVQGLIRHFRPVIEDRIRAY 420

Query: 420 HR 421
            +
Sbjct: 421 KQ 422


>gi|329114683|ref|ZP_08243442.1| NADH-quinone oxidoreductase chain 1 [Acetobacter pomorum DM001]
 gi|326696163|gb|EGE47845.1| NADH-quinone oxidoreductase chain 1 [Acetobacter pomorum DM001]
          Length = 442

 Score =  617 bits (1592), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 292/420 (69%), Positives = 337/420 (80%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L  +  RG WDN   I+ KGRD +I E+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNLYGQDDWRLPAARKRGDWDNTAAIIAKGRDAVIAEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+N DESEPGTCKDR++MRHEPH LIE  +IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKKSDGRPHYLVINGDESEPGTCKDREVMRHEPHKLIESAMIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGEF RE E LQAA+DE Y +GLLG N+   G+D D  +H GAGAYICGEETALL
Sbjct: 121 SYIYIRGEFCREAERLQAAIDEAYEAGLLGKNAAGTGWDFDFRIHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR+KPPFPA  GLYGCPTTVNNVESIAV  TI+RRGA+W+SG GR NN GT
Sbjct: 181 ESLEGKKGQPRMKPPFPAGAGLYGCPTTVNNVESIAVTSTIMRRGAAWFSGLGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +ISGHVN PC  EE + ++  E+IEKH GG+RGGWDNLLAVIPGG SVP LP     
Sbjct: 241 KLMAISGHVNTPCVFEEELGVSLKEIIEKHGGGVRGGWDNLLAVIPGGCSVPVLPKSICE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+   SGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM
Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDIIEAIARFSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M R+V+G A+  EIDLL +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI QY
Sbjct: 361 RMMNRMVQGKAEIEEIDLLEQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMEARIRQY 420


>gi|162148806|ref|YP_001603267.1| NADH dehydrogenase I subunit F [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209545446|ref|YP_002277675.1| NADH dehydrogenase subunit I F [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787383|emb|CAP56978.1| NADH-quinone oxidoreductase chain F [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533123|gb|ACI53060.1| NADH-quinone oxidoreductase, F subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 441

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 290/420 (69%), Positives = 341/420 (81%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG Q   L+ + +RG WD   +I+ +GRD IINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNLYGQQDWRLAGARARGDWDGTAEIIARGRDAIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+N DESEPGTCKDR+I+RH+PH LIE  +IASFA+GAH 
Sbjct: 61  PTGVKWSFMPKNSDGRPHYLVINGDESEPGTCKDREILRHDPHKLIESALIASFAMGAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   LQ A+DE YA+GL+G N+   G+D D  +H GAGAYICGEETALL
Sbjct: 121 AYIYIRGEFFNEARHLQIAIDEAYAAGLIGQNAAGSGWDFDFYIHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV  TILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVAATILRRGATWFSSLGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +ISGHVN PC  EE + +   ++IEKH GG+RGGWDNLLAVIPGGSSVP LPA    
Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLKDIIEKHGGGVRGGWDNLLAVIPGGSSVPLLPASVCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+   SGLGTA +IVMD+STD+I+AI R S FYKHESCGQCTPCREGTGWMM
Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDVIRAIARFSQFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM R+V+G A+  EID+L +V++ +EG TICALGDAAAWPIQGLI++FRP++EERI  Y
Sbjct: 361 RVMHRMVEGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRHFRPVMEERIRAY 420


>gi|639834|emb|CAA58823.1| NADH dehydrogenase [Solanum tuberosum]
          Length = 487

 Score =  615 bits (1586), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 288/425 (67%), Positives = 338/425 (79%), Gaps = 1/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 58  LKDEDRIFTNLYGLHDPYLKGAMKRGDWYRTKDLVIKGSDWIVNEMKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKTTDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRAKAA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER+SLQ A  E Y +GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERKSLQKARQEAYEAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI+  ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 298 LFCISGHVNKPCTVEEEMSISLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKNICED 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI ++ 
Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIREHA 477

Query: 421 RCNFQ 425
               Q
Sbjct: 478 ERELQ 482


>gi|83858409|ref|ZP_00951931.1| NADH dehydrogenase I, F subunit [Oceanicaulis alexandrii HTCC2633]
 gi|83853232|gb|EAP91084.1| NADH dehydrogenase I, F subunit [Oceanicaulis alexandrii HTCC2633]
          Length = 435

 Score =  615 bits (1585), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 291/419 (69%), Positives = 341/419 (81%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYG     L  +  RGHW+   +ILE+GRDWII+E+K SGLRGRGGAGF
Sbjct: 4   LLQDKDRIFTNLYGRHDWRLEGAKQRGHWNATKEILEQGRDWIIDEMKKSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMR++P TLIEGC+IASFA+ AH 
Sbjct: 64  PTGLKWSFMPKEVGARPHYLVVNADESEPGTCKDREIMRNDPQTLIEGCLIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+  E   ++AA+ E Y + L+G ++  G+D D+ +HHGAGAYICGEETALLE
Sbjct: 124 CYIYIRGEYQFELGRMEAAIKEAYDAKLIGKDNIHGWDFDLYIHHGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN GLYG PTTVNNVESIAV PTILRRGA W++GFGRE N GTK
Sbjct: 184 SLEGKKGQPRLKPPFPANAGLYGAPTTVNNVESIAVAPTILRRGADWFAGFGREGNAGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FSISGHVN PC VEE MSI    LIE HCGG+RGGWDNL AVIPGGSSVP LP      
Sbjct: 244 VFSISGHVNAPCNVEEVMSIPLKTLIETHCGGVRGGWDNLKAVIPGGSSVPLLPKEICDD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LKE  SGLGTAAVIVMD+STD++KAI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 304 VLMDFDALKEHRSGLGTAAVIVMDKSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V++R+ +G A+  EID L +V+  +EG TICALGDAAAWP+QGLI++FR  IE+RI+ Y
Sbjct: 364 VLDRMSRGEAETSEIDDLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRGEIEDRINNY 422


>gi|258542717|ref|YP_003188150.1| NADH dehydrogenase I subunit F [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633795|dbj|BAH99770.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636854|dbj|BAI02823.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639907|dbj|BAI05869.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642963|dbj|BAI08918.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646018|dbj|BAI11966.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649071|dbj|BAI15012.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652058|dbj|BAI17992.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655115|dbj|BAI21042.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-12]
          Length = 442

 Score =  615 bits (1585), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 290/420 (69%), Positives = 336/420 (80%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L  +  RG W+N   I+ KGRD ++ E+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNLYGQDDWRLPAARKRGDWENTAAIIAKGRDAVVAEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+N DESEPGTCKDR++MRHEPH LIE  +IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKKSDGRPHYLVINGDESEPGTCKDREVMRHEPHKLIESAMIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGEF RE E LQAA+DE Y +GLLG N+   G+D D  +H GAGAYICGEETALL
Sbjct: 121 SYIYIRGEFCREAERLQAAIDEAYEAGLLGKNAAGSGWDFDFRIHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR+KPPFPA  GLYGCPTTVNNVESIAV  TI+RRGA+W+SG GR NN GT
Sbjct: 181 ESLEGKKGQPRMKPPFPAGAGLYGCPTTVNNVESIAVTSTIMRRGAAWFSGLGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +ISGHVN PC  EE + +   E+IEKH GG+RGGWDNLLAVIPGG SVP LP     
Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLKEIIEKHGGGVRGGWDNLLAVIPGGCSVPVLPKSICE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+   SGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM
Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDIIEAIARFSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M R+V+G A+  EIDLL +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI QY
Sbjct: 361 RMMNRMVQGTAEIEEIDLLEQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMEARIRQY 420


>gi|83311881|ref|YP_422145.1| NADH dehydrogenase I subunit F [Magnetospirillum magneticum AMB-1]
 gi|82946722|dbj|BAE51586.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 427

 Score =  614 bits (1584), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 297/425 (69%), Positives = 341/425 (80%), Gaps = 2/425 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTNLYG+    L  +M+RG W+    IL KGRDWII E+K SGLRGRGGAGF
Sbjct: 1   MLRDSDRIFTNLYGIHDWRLKGAMARGDWNGTKDILAKGRDWIIEEMKNSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+NADE EPGTCKDR++MR +PH LIEG +IASFAIGAH 
Sbjct: 61  PTGVKWSFMPKTEGPRPHYLVINADEGEPGTCKDREMMRFDPHKLIEGALIASFAIGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF+RE E L  A+DE  A+GLLG N+   G+D ++ VH GAGAYICGEE+AL+
Sbjct: 121 AYIYIRGEFVREAEHLNIAIDEARAAGLLGPNACGSGWDCEVYVHRGAGAYICGEESALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRGA+W+SG G+ NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGAAWFSGLGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE M I   ELIEKH GG+RGGWDNLLA+IPGGSSVP L   Q  
Sbjct: 241 KVFCISGHVNTPCNVEEEMGIPLKELIEKHAGGVRGGWDNLLAIIPGGSSVPMLTKQQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ M SGLGTAAV+VMD+STD+++AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 301 EVTMDFDALRAMRSGLGTAAVMVMDKSTDLVRAIHRLSRFYWHESCGQCTPCREGTGWMS 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-DQ 418
           R+M R+V G A+  EIDLL E+S+ IEG TICALGDAAAWPIQGLI+ FRP +E RI D+
Sbjct: 361 RMMGRMVTGDAELSEIDLLEEISRQIEGHTICALGDAAAWPIQGLIRAFRPEMERRILDR 420

Query: 419 YHRCN 423
             + N
Sbjct: 421 QAKTN 425


>gi|254294097|ref|YP_003060120.1| NADH dehydrogenase I subunit F [Hirschia baltica ATCC 49814]
 gi|254042628|gb|ACT59423.1| NADH-quinone oxidoreductase, F subunit [Hirschia baltica ATCC
           49814]
          Length = 436

 Score =  614 bits (1584), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 290/420 (69%), Positives = 344/420 (81%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG    SL  +  RG W++  ++++ G +WI +++K SGLRGRGGAGF
Sbjct: 1   MLLDKDRIFTNLYGHHDWSLEGAKQRGAWNSTKELMQFGPEWICDQIKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+FMPK   DRPHYLVVNADESEPGTCKDRDIMRH+PH LIEGC+IAS+A+ A+ 
Sbjct: 61  PTGLKWTFMPKEVKDRPHYLVVNADESEPGTCKDRDIMRHDPHLLIEGCLIASYAMRANT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+I ERE LQ A++E Y +GL+G N+   G+D D+ VHHGAGAYICGEETALL
Sbjct: 121 CYIYLRGEYIFERERLQQAINEAYKAGLIGKNACGSGWDFDLHVHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPAN GLYG PTTVNNVESIAV PTILRRGA W+  FGR+NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANAGLYGAPTTVNNVESIAVAPTILRRGAGWFKKFGRDNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F+ISGHVN PC VEE MSI    L+E HCGG+RGGW+NL AVIPGGSSVP +P     
Sbjct: 241 KVFAISGHVNRPCNVEEEMSIPLKTLLETHCGGVRGGWENLKAVIPGGSSVPMIPKDICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E+ SGLGTAAVIVMD+STD+++AI RL+ FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDALREVQSGLGTAAVIVMDQSTDVVRAIARLAYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+VKG A+  EID+L +VS  IEG TICALGDAAAWP+QGLI++FR  IEERI  Y
Sbjct: 361 RVLTRMVKGEAEASEIDMLLDVSYQIEGHTICALGDAAAWPVQGLIRHFRSEIEERISSY 420


>gi|83592895|ref|YP_426647.1| NADH dehydrogenase I subunit F [Rhodospirillum rubrum ATCC 11170]
 gi|83575809|gb|ABC22360.1| NADH-quinone oxidoreductase, F subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 429

 Score =  614 bits (1583), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/417 (70%), Positives = 338/417 (81%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG Q   L+ +  RG WD    IL KGRD IINE+KASGLRGRGGAGF
Sbjct: 1   MLNDKDRIFTNLYGFQDWRLAGARKRGDWDGTGAILAKGRDGIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK   +RPHYLVVNADE EPGTCKDRD+MR +PH LIEGC+IA FA+GAH 
Sbjct: 61  PTGLKWSFMPKDIGERPHYLVVNADEGEPGTCKDRDMMRFDPHKLIEGCLIAGFAMGAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF RE E L+ A+ E   +GLLG N+   G+D+++ VH GAGAYICGEETAL+
Sbjct: 121 AYIYIRGEFFREAEHLEFAIAEAREAGLLGPNACGSGWDMEVYVHRGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG +W++G GRENN GT
Sbjct: 181 QSLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGRENNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE M I   ELI+KH GG+RGGWDNLL VIPGG+SVP LP     
Sbjct: 241 KVFCISGHVNKPCNVEEEMGIPLRELIDKHAGGVRGGWDNLLGVIPGGASVPVLPRELCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTAAV+VMD+STDI++AI RLS FY HESCGQCTPCREGTGW+ 
Sbjct: 301 DVLMDFDSLKAVKSGLGTAAVMVMDKSTDIVRAIARLSAFYTHESCGQCTPCREGTGWLS 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM RLV G A   EID+L +V++ IEG TICALGDAAAWPIQGLI++FRP IE RI
Sbjct: 361 RVMTRLVNGDAAIEEIDVLEQVTRQIEGHTICALGDAAAWPIQGLIRHFRPEIERRI 417


>gi|16126190|ref|NP_420754.1| NADH dehydrogenase I subunit F [Caulobacter crescentus CB15]
 gi|221234961|ref|YP_002517397.1| NADH dehydrogenase I subunit F [Caulobacter crescentus NA1000]
 gi|13423406|gb|AAK23922.1| NADH dehydrogenase I, F subunit [Caulobacter crescentus CB15]
 gi|220964133|gb|ACL95489.1| NADH-quinone oxidoreductase chain F [Caulobacter crescentus NA1000]
          Length = 439

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/420 (70%), Positives = 339/420 (80%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYGL    L  +  RG W+    IL+ GRDWII  +K SGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGLHDWGLEGAKKRGCWNGTKDILDAGRDWIIENMKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK   D RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH
Sbjct: 64  STGLKWSFMPKEVKDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAH 123

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGE++ ERE L+AA+ + Y + L+G N+  G+D DI VHHGAGAYICGEETALL
Sbjct: 124 ACYIYIRGEYVFERERLEAAIKQAYEAKLVGKNNVHGWDFDIYVHHGAGAYICGEETALL 183

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYG PTTVNNVESIAV  TILRRGA+W++GFGR NN GT
Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNAGT 243

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGHVN PC VEE+MSI F +L+E HCGGIRGGW NL AVIPGGSSVP +PA Q  
Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLVEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ + SGLGTAAVIVMD+ TD+++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 304 DLPMDFDALRNLKSGLGTAAVIVMDKDTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+V G A  +EID L +V+  +EG TICALGDAAAWPIQGL ++FR  +EERI  Y
Sbjct: 364 RVMERMVTGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEERIASY 423


>gi|308811771|ref|XP_003083193.1| PREDICTED P0503D09.102 gene product [Oryza sativa (ISS)
           [Ostreococcus tauri]
 gi|116055072|emb|CAL57468.1| PREDICTED P0503D09.102 gene product [Oryza sativa (ISS)
           [Ostreococcus tauri]
          Length = 491

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/416 (68%), Positives = 340/416 (81%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D DRIFTNLYG     L  +M+RG W    K++E G DWI+NE+KASGLRGRGGAGF 
Sbjct: 65  LSDADRIFTNLYGRHDPFLKGAMARGDWYETKKLVELGADWIVNEMKASGLRGRGGAGFP 124

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA  A+ A  A
Sbjct: 125 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAA 184

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A+ E YA+G LG ++   G D D+ +H+GAGAYICGEETAL+E
Sbjct: 185 YIYIRGEYVNERLALERALAEAYAAGFLGKDACGTGLDFDVNIHYGAGAYICGEETALIE 244

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 245 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVAPTILRRGPEWFASFGRKNNAGTK 304

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   +LIEKHCGG+RGGWDNLLAVIPGGSSVP +       
Sbjct: 305 LFCISGHVNNPCTVEEEMSIPLKDLIEKHCGGVRGGWDNLLAVIPGGSSVPMITKDVCDD 364

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK +GSGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 365 VLMDFDALKGVGSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTSWIYN 424

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +M+RLVKG A+  E+++L E++K IEG TICALGDAAAWP+QGL+KNF PLI ERI
Sbjct: 425 IMKRLVKGDARLEEVEMLQEITKQIEGHTICALGDAAAWPVQGLLKNFSPLIRERI 480


>gi|326490041|dbj|BAJ94094.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326490708|dbj|BAJ90021.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 505

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 289/416 (69%), Positives = 336/416 (80%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W+    ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGLHDPFLKGAMKRGDWNRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YASGLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYASGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAV+VMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVMVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI
Sbjct: 436 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 491


>gi|295689621|ref|YP_003593314.1| NADH-quinone oxidoreductase subunit F [Caulobacter segnis ATCC
           21756]
 gi|295431524|gb|ADG10696.1| NADH-quinone oxidoreductase, F subunit [Caulobacter segnis ATCC
           21756]
          Length = 439

 Score =  612 bits (1577), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/420 (70%), Positives = 341/420 (81%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYGLQ   L  +  RG W+    IL+ GRDWII+ +K SGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGLQDWGLEGAKKRGCWNGTKDILDAGRDWIIDNMKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK V   RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ A+
Sbjct: 64  STGLKWSFMPKEVKEGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAN 123

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGE++ ERE L+AA+ + Y + L+G N+  G+D D+ VHHGAGAYICGEETALL
Sbjct: 124 ACYIYIRGEYVFERERLEAAIKQAYEAKLIGKNNVHGWDFDLYVHHGAGAYICGEETALL 183

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYG PTTVNNVESIAV  TILRRGA+W++GFGR NN GT
Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNAGT 243

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGHVN PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q  
Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ + SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 304 DLPMDFDALRNLRSGLGTAAVIVMDKSTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+  G A  +EID L +V+  +EG TICALGDAAAWPIQGL ++FR  +EERI  Y
Sbjct: 364 RVMERMATGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEERIASY 423


>gi|46202357|ref|ZP_00208485.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
           subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 427

 Score =  611 bits (1575), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 295/419 (70%), Positives = 335/419 (79%), Gaps = 1/419 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTNLYG     L  + SRG WDN   IL+KGRDWII E+K SGLRGRGGAGF
Sbjct: 1   MLRDSDRIFTNLYGFHDWRLKGAQSRGDWDNTKAILDKGRDWIIEEMKNSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+NADE EPGTCKDR++MR +PH LIEG +IA FAIGAH 
Sbjct: 61  PTGVKWSFMPKTEGPRPHYLVINADEGEPGTCKDREMMRFDPHKLIEGALIACFAIGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF+ E E L  A+ E  A+GLLG N+   G+D ++ VH GAGAYICGEE+AL+
Sbjct: 121 AYIYIRGEFVLEAEHLNTAIAEARAAGLLGPNACGSGWDCEVYVHRGAGAYICGEESALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRGA+W+SG G+ NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGAAWFSGLGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE M I   +LIEKH GG+RGGWDNLLA+IPGGSSVP L   Q  
Sbjct: 241 KVFCISGHVNTPCNVEEEMGIPLKDLIEKHAGGVRGGWDNLLAIIPGGSSVPMLNKQQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ M SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 301 EVTMDFDALRAMRSGLGTAAVIVMDKSTDLVRAIHRLSRFYWHESCGQCTPCREGTGWMS 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           R+M R+V G A+  EIDLL EVS+ IEG TICALGDAAAWPIQGLI+ FRP +E RI +
Sbjct: 361 RMMGRMVTGDAELSEIDLLEEVSRQIEGHTICALGDAAAWPIQGLIRTFRPEMERRIKE 419


>gi|168003423|ref|XP_001754412.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694514|gb|EDQ80862.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 462

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/416 (68%), Positives = 335/416 (80%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L+ +  RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 31  LKDEDRIFTNLYGLHDPFLAGAKKRGDWYRTKDLVHKGTDWIVNEVKKSGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 91  SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAA 150

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +LQ A+ ECY  GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 151 YIYIRGEYVNERLNLQKALHECYKEGLLGKNACSTGYDFDVYIHYGAGAYICGEETALLE 210

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 211 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNSGTK 270

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 271 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W+  
Sbjct: 331 VLMDFDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGSPWLWT 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI
Sbjct: 391 MMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 446


>gi|303278834|ref|XP_003058710.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459870|gb|EEH57165.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 468

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 287/417 (68%), Positives = 337/417 (80%), Gaps = 1/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W N   ++  G DWI+NE+KASGLRGRGGAGF 
Sbjct: 42  LKDEDRIFTNLYGKHDPFLKGAMKRGDWYNTKDLMLMGPDWIVNEIKASGLRGRGGAGFP 101

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLV+NADESEPGTCKDR+IMRH+PH L+EGC+IA  A+ A   
Sbjct: 102 SGLKWSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAC 161

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A DE YA+G LG N+   G D DI +H+GAGAYICGEETAL+E
Sbjct: 162 YIYIRGEYVNERLNLERARDEAYAAGYLGKNACGSGIDFDINIHYGAGAYICGEETALIE 221

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRGA W+S FGR+NN GTK
Sbjct: 222 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVAPTILRRGAEWFSSFGRKNNAGTK 281

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLA+IPGGSSVP +P      
Sbjct: 282 LFCISGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLIPKKICEE 341

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK   SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 342 VLMDFDSLKSAQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLYN 401

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           VMER+ KG A+  EID+L E++K IEG TICALGDAAAWP+QGLI++FRP +E RI+
Sbjct: 402 VMERMKKGDARLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELEARIN 458


>gi|302791665|ref|XP_002977599.1| hypothetical protein SELMODRAFT_443575 [Selaginella moellendorffii]
 gi|300154969|gb|EFJ21603.1| hypothetical protein SELMODRAFT_443575 [Selaginella moellendorffii]
          Length = 483

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/416 (68%), Positives = 337/416 (81%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG+    L  +M+RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 53  LKDEDRIFTNLYGIHDPFLKGAMARGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFP 112

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 113 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGCLIAGVGMRARAA 172

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER++L+ AV E YA+G +G N+   GYD DI VH GAGAYICGEETALLE
Sbjct: 173 YIYIRGEYVNERKNLERAVKEAYAAGYIGKNACGSGYDFDIHVHFGAGAYICGEETALLE 232

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 233 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 292

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 293 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDD 352

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 353 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWT 412

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +MER+  G A   EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI
Sbjct: 413 LMERMKVGNAYLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 468


>gi|255547796|ref|XP_002514955.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus
           communis]
 gi|223546006|gb|EEF47509.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus
           communis]
          Length = 486

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/418 (68%), Positives = 336/418 (80%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 58  LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERINLERARKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 298 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 358 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI +
Sbjct: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 475


>gi|209964545|ref|YP_002297460.1| NADH dehydrogenase I subunit F [Rhodospirillum centenum SW]
 gi|209958011|gb|ACI98647.1| NADH-quinone oxidoreductase chain F [Rhodospirillum centenum SW]
          Length = 433

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 297/421 (70%), Positives = 334/421 (79%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG +   L  +  RG WDN   IL  GRD II  VK SGLRGRGGAGF
Sbjct: 1   MLRDEDRIFTNLYGFEDFRLEAARRRGDWDNTQDILALGRDRIIELVKESGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK     P YLVVNADE EPGTCKDRDI+RH+PH L+EGC+IA FAIGA  
Sbjct: 61  STGMKWSFMPKKSDGGPVYLVVNADEGEPGTCKDRDILRHDPHKLVEGCLIAGFAIGATA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E   +Q A+DE YA+GL+G N+   GYD DI +H GAGAYICGEETAL+
Sbjct: 121 CYIYIRGEFYDEGSHVQQAIDEAYAAGLIGRNACGSGYDFDIYLHRGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR KPPFPA  GLY  PTTVNNVE+IAVVPTILRRGA+W++G GR  N GT
Sbjct: 181 ESLEGKKGQPRNKPPFPAMAGLYARPTTVNNVETIAVVPTILRRGATWFAGLGRPKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE M I   EL+EKH GG+RGGWDNLLA+IPGGSSVP LP     
Sbjct: 241 KVFCISGHVNRPCNVEEEMGIPLRELVEKHAGGVRGGWDNLLAIIPGGSSVPMLPRETCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E+ SGLGTAAVIVMDRSTD++KAI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 301 TVLMDFDSLREVRSGLGTAAVIVMDRSTDVVKAIARLSKFYMHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+VKG A+  EID+L +VSK IEG TICALGDAAAWPIQGLI+NFRP +E RI +Y
Sbjct: 361 RVMERMVKGQARIEEIDMLLDVSKEIEGHTICALGDAAAWPIQGLIRNFRPEMERRILEY 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|302786848|ref|XP_002975195.1| hypothetical protein SELMODRAFT_150347 [Selaginella moellendorffii]
 gi|300157354|gb|EFJ23980.1| hypothetical protein SELMODRAFT_150347 [Selaginella moellendorffii]
          Length = 460

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/416 (68%), Positives = 337/416 (81%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG+    L  +M+RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 30  LKDEDRIFTNLYGIHDPFLKGAMARGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFP 89

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 90  SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGCLIAGVGMRARAA 149

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER++L+ AV E YA+G +G N+   GYD DI VH GAGAYICGEETALLE
Sbjct: 150 YIYIRGEYVNERKNLERAVKEAYAAGYIGKNACGSGYDFDIHVHFGAGAYICGEETALLE 209

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 210 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 269

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 270 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDD 329

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 330 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWT 389

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +MER+  G A   EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI
Sbjct: 390 LMERMKVGNAYLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 445


>gi|330994059|ref|ZP_08317989.1| NADH-quinone oxidoreductase chain 1 [Gluconacetobacter sp. SXCC-1]
 gi|329759005|gb|EGG75519.1| NADH-quinone oxidoreductase chain 1 [Gluconacetobacter sp. SXCC-1]
          Length = 454

 Score =  608 bits (1569), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/420 (68%), Positives = 339/420 (80%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG    +L+ + +RG WD   +IL +GRD IINE+KASGLRGRGGAGF
Sbjct: 14  MLQDKDRIFTNLYGQGDWTLAGARARGDWDGTAEILARGRDAIINEMKASGLRGRGGAGF 73

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+N DESEPGTCKDR+I+RH+PH L+E  +IASFA+GAH 
Sbjct: 74  PTGVKWSFMPKKNDGRPHYLVINGDESEPGTCKDREILRHDPHKLVESALIASFAMGAHA 133

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   LQ A+DE YA+GL+G N+   G+D D  +H GAGAYICGEETALL
Sbjct: 134 AYIYIRGEFYNEAMHLQHAIDEAYAAGLIGPNACGSGWDFDFYIHRGAGAYICGEETALL 193

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV  TILRRGA+W+SG GR NN GT
Sbjct: 194 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVSATILRRGAAWFSGLGRPNNAGT 253

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +ISGHVN PC  EE + +   ELIEKH GG+RGGWDNLLAVIPGG SVP LP     
Sbjct: 254 KLMAISGHVNTPCVFEEELGVPMRELIEKHGGGVRGGWDNLLAVIPGGCSVPMLPRDVCD 313

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+  GSGLGT  +IVMD+STDII AI R S F+KHESCGQCTPCREGTGWMM
Sbjct: 314 TVLMDYDSLRAEGSGLGTGCMIVMDKSTDIIAAIARFSKFFKHESCGQCTPCREGTGWMM 373

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M+R+V+G A+  EID+L +V++ +EG TICALGDAAAWPIQGLI+ FRP++EERI  Y
Sbjct: 374 RIMDRMVQGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRRFRPVMEERIRAY 433


>gi|224110746|ref|XP_002315622.1| predicted protein [Populus trichocarpa]
 gi|222864662|gb|EEF01793.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  608 bits (1567), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/418 (68%), Positives = 335/418 (80%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YGL    L  +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 57  LKDEDRIFTNVYGLHDPFLKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 116

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 117 SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 176

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 177 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 236

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 237 SLEGKQGKPRLKPPFPANSGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 296

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 297 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 356

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 357 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 416

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI +
Sbjct: 417 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 474


>gi|255078918|ref|XP_002503039.1| predicted protein [Micromonas sp. RCC299]
 gi|226518305|gb|ACO64297.1| predicted protein [Micromonas sp. RCC299]
          Length = 441

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 284/417 (68%), Positives = 338/417 (81%), Gaps = 1/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M RG W N  +++  G DWI+NE+KASGLRGRGGAGF 
Sbjct: 15  LSDEDRIFTNLYGKHDPFLKGAMKRGDWYNTKELMLMGPDWIVNEMKASGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLV+NADESEPGTCKDR+IMRH+PH L+EGC+IA  A+ A   
Sbjct: 75  SGLKWSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAC 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L  A DE YA+G LG N+   G D DI +H+GAGAYICGEETAL+E
Sbjct: 135 YIYIRGEYVNERLALMKARDEAYAAGYLGKNACGSGIDFDINIHYGAGAYICGEETALIE 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRGA W++ FGR+NN GTK
Sbjct: 195 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVAPTILRRGADWFASFGRKNNAGTK 254

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   +LIEKHCGG+RGGWDNLLA+IPGGSSVP +P      
Sbjct: 255 LFCISGHVNKPCTVEEEMSIPLKDLIEKHCGGVRGGWDNLLAIIPGGSSVPLIPKSVCEE 314

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK   SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 315 VLMDFDSLKSAQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLYA 374

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +MER+ KG A+  EID+L E++K IEG TICALGDAAAWP+QGLI++FRP +E RI+
Sbjct: 375 IMERMKKGDARLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELEARIN 431


>gi|159489210|ref|XP_001702590.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Chlamydomonas
           reinhardtii]
 gi|158280612|gb|EDP06369.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Chlamydomonas
           reinhardtii]
          Length = 484

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 283/416 (68%), Positives = 337/416 (81%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIF N+YG    S+  +MSRG W    +I+ KGRDWII+++K SGLRGRGGAGF 
Sbjct: 56  LKDEDRIFQNIYGRHDLSIKGAMSRGDWYMTKEIIGKGRDWIIDQMKKSGLRGRGGAGFP 115

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC++A  A+GA   
Sbjct: 116 SGLKWSFMPKASDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLMAGVAMGARAG 175

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF++ER +++ A+ E YA G LG N+   G D D++VH+GAGAYICGEETAL+E
Sbjct: 176 YIYIRGEFVQERRAVERAISEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETALIE 235

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 236 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 295

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN P TVEE MSI   ELIE+H GG+RGGWDNLLA+IPGGSSVP LP     G
Sbjct: 296 LFCISGHVNRPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLPKKICDG 355

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LKE  SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 356 VLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWLYD 415

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +M R+ KG A+  EID+L+E++K IEG TICALGDAAAWP+QGLI++FR  +EERI
Sbjct: 416 IMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRGEMEERI 471


>gi|226532265|ref|NP_001148767.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays]
 gi|195621992|gb|ACG32826.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays]
          Length = 504

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 285/418 (68%), Positives = 336/418 (80%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  ++ RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGLHDPFLKGAVKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E+RI +
Sbjct: 436 IMERLKVGDAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELEKRIRE 493


>gi|34328784|gb|AAQ63696.1| NADH:ubiquinone oxidoreductase 51 kD subunit [Chlamydomonas
           reinhardtii]
          Length = 484

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 283/416 (68%), Positives = 337/416 (81%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIF N+YG    S+  +MSRG W    +I+ KGRDWII+++K SGLRGRGGAGF 
Sbjct: 56  LKDEDRIFQNIYGRHDLSIKGAMSRGDWYMTKEIIGKGRDWIIDQMKKSGLRGRGGAGFP 115

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC++A  A+GA   
Sbjct: 116 SGLKWSFMPKASDSRPIYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLMAGVAMGARAG 175

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF++ER +++ A+ E YA G LG N+   G D D++VH+GAGAYICGEETAL+E
Sbjct: 176 YIYIRGEFVQERRAVERAISEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETALIE 235

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 236 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 295

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN P TVEE MSI   ELIE+H GG+RGGWDNLLA+IPGGSSVP LP     G
Sbjct: 296 LFCISGHVNRPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLPKKICDG 355

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LKE  SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 356 VLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWLYD 415

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +M R+ KG A+  EID+L+E++K IEG TICALGDAAAWP+QGLI++FR  +EERI
Sbjct: 416 IMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRGEMEERI 471


>gi|296116530|ref|ZP_06835140.1| NADH dehydrogenase I subunit F [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976742|gb|EFG83510.1| NADH dehydrogenase I subunit F [Gluconacetobacter hansenii ATCC
           23769]
          Length = 441

 Score =  604 bits (1558), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 285/420 (67%), Positives = 338/420 (80%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L+ +  RG W++   IL +GRD II E+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFTNLYGQNDWRLAGARQRGDWNDTAAILARGRDAIIAEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+N DESEPGTCKDR+I+RH+PH LIE  +IASFA+GAH 
Sbjct: 61  PTGVKWSFMPKTSDGRPHYLVINGDESEPGTCKDREILRHDPHKLIESALIASFAMGAHK 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGEF  E + LQ A++E Y +GL+G N+   G+D D  +H GAGAYICGEETALL
Sbjct: 121 SYIYIRGEFFNEAQHLQHAIEEAYEAGLIGPNAAGSGWDFDFYIHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV  TILRRGA+W+SG GR NN GT
Sbjct: 181 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVTSTILRRGAAWFSGLGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +ISGHVN PC  EE + +   ++IEKH GG+RGGWDNLLAVIPGG SVP LP     
Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLRDIIEKHGGGVRGGWDNLLAVIPGGCSVPMLPREVCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+  GSGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM
Sbjct: 301 TVLMDYDSLRAEGSGLGTACMIVMDKSTDIIRAIARFSQFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+R+V+G A+  EID+L +V++ +EG TICALGDAAAWPIQGLI+ FRP++EERI  Y
Sbjct: 361 RVMQRMVEGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRRFRPVMEERIHAY 420


>gi|91205998|ref|YP_538353.1| NADH dehydrogenase I subunit F [Rickettsia bellii RML369-C]
 gi|157826638|ref|YP_001495702.1| NADH dehydrogenase I subunit F [Rickettsia bellii OSU 85-389]
 gi|122425283|sp|Q1RHA0|NUOF_RICBR RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|166918573|sp|A8GYE0|NUOF_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|91069542|gb|ABE05264.1| NADH dehydrogenase I chain F [Rickettsia bellii RML369-C]
 gi|157801942|gb|ABV78665.1| NADH dehydrogenase I chain F [Rickettsia bellii OSU 85-389]
          Length = 417

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 295/417 (70%), Positives = 331/417 (79%), Gaps = 2/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +DRIFTNL+G Q   L  S   G WDN   +L KG++WII EVK SGLRGRGGAGF
Sbjct: 1   MLKKEDRIFTNLHGEQSHDLKSSKKLGDWDNTKALLNKGKEWIIEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG KWSFMPK  S +P YLVVNADESEPGTCKDRDI+R+EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGTKWSFMPKE-SKKPSYLVVNADESEPGTCKDRDILRYEPHKLIEGCLLASFAIGANS 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G++ DI +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFNCDIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I   E+IEKH GG+RGGWDNL A+IPGGSSVP LP     
Sbjct: 240 KIFCISGHVNKPCNVEEAMGIPLKEIIEKHAGGVRGGWDNLKAIIPGGSSVPLLPKSLCE 299

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+D LK  GS LGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 300 TADMDFDSLKAAGSSLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM RLVKG A+K EID L EV+K IEG TICALGDAAAWPIQGLIK+FR  IE RI
Sbjct: 360 RVMMRLVKGDAKKSEIDQLLEVTKEIEGHTICALGDAAAWPIQGLIKHFRNEIESRI 416


>gi|307136131|gb|ADN33976.1| NADH-ubiquinone oxidoreductase flavoprotein [Cucumis melo subsp.
           melo]
          Length = 480

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/408 (69%), Positives = 330/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 52  LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 111

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 112 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATAA 171

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER++L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 172 YIYIRGEYVNERKNLEKARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 231

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 232 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 291

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 292 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 351

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STDI+ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 352 VLMDYDALKAVQSGLGTAAVIVMDKSTDIVDAIARLSYFYKHESCGQCTPCREGTGWLWM 411

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLIKNF
Sbjct: 412 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIKNF 459


>gi|168052872|ref|XP_001778863.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669732|gb|EDQ56313.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 463

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 284/417 (68%), Positives = 335/417 (80%), Gaps = 2/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG+    L+ +  RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 31  LKDEDRIFTNLYGIHDPFLAGAKKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 91  SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAA 150

Query: 122 FIYVRGEFIRERESLQAAVDECYASG-LLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           +IY+RGE++ ER +LQ A+ ECY  G LLG N+   GYD D+ +H+GAGAYICGEETALL
Sbjct: 151 YIYIRGEYVNERLNLQKALHECYKEGSLLGKNACGSGYDFDVYIHYGAGAYICGEETALL 210

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GT
Sbjct: 211 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNSGT 270

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP     
Sbjct: 271 KLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKNICD 330

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W+ 
Sbjct: 331 DVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGSPWLW 390

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI
Sbjct: 391 TMMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 447


>gi|147841727|emb|CAN73193.1| hypothetical protein VITISV_022287 [Vitis vinifera]
          Length = 489

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/408 (69%), Positives = 331/408 (81%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 60  LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 119

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 120 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATTA 179

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER++L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 180 YIYIRGEYVNERKNLERARKEAYEAGLLGKNACXSGYDFDVHIHYGAGAYICGEETALLE 239

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++GFGR+NN GTK
Sbjct: 240 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNAGTK 299

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 300 LYCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 359

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW++ 
Sbjct: 360 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLLM 419

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A   EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 420 MMERLKVGNANLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 467


>gi|297810971|ref|XP_002873369.1| hypothetical protein ARALYDRAFT_487692 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319206|gb|EFH49628.1| hypothetical protein ARALYDRAFT_487692 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 486

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 282/408 (69%), Positives = 330/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           LTD+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 58  LTDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P      
Sbjct: 298 LFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>gi|157964179|ref|YP_001499003.1| NADH dehydrogenase I subunit F [Rickettsia massiliae MTU5]
 gi|166918575|sp|A8F0M0|NUOF_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|157843955|gb|ABV84456.1| NADH dehydrogenase I chain F [Rickettsia massiliae MTU5]
          Length = 421

 Score =  602 bits (1551), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 294/420 (70%), Positives = 338/420 (80%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNACDSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-LLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVEMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLVKG A+K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI  Y
Sbjct: 359 RVMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418


>gi|225462161|ref|XP_002266661.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 487

 Score =  602 bits (1551), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/408 (69%), Positives = 331/408 (81%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 58  LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATTA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER++L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERKNLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++GFGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNAGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 298 LYCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW++ 
Sbjct: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLLM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A   EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 418 MMERLKVGNANLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>gi|302833609|ref|XP_002948368.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Volvox carteri f.
           nagariensis]
 gi|300266588|gb|EFJ50775.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Volvox carteri f.
           nagariensis]
          Length = 489

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/418 (67%), Positives = 335/418 (80%), Gaps = 3/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF N+YG    S+  +MSRG W    +++ KGRDWII+++K SGLRGRGGAGF 
Sbjct: 59  LKDDDRIFQNIYGRHDTSIKGAMSRGDWYMTKELVLKGRDWIIDQMKKSGLRGRGGAGFP 118

Query: 62  TGMKWSFMPKVCSD--RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           +G+KWSFMPK  +   RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC+IA  A+GA 
Sbjct: 119 SGLKWSFMPKAMASDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLIAGVAMGAR 178

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+RGEF+ ER S+  A+DE YA G LG N+   G D D++VH+GAGAYICGEETAL
Sbjct: 179 AGYIYIRGEFVNERRSVMRAIDEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETAL 238

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN G
Sbjct: 239 IESLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAG 298

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHVN PCTVEE MSI   ELIE+H GG+RGGWDNLLA+IPGGSSVP L     
Sbjct: 299 TKLFCISGHVNRPCTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLTKKLC 358

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              +MD+D LKE  SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+
Sbjct: 359 DTVLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWL 418

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +M R+ KG A+  EID+L+E++K IEG TICALGDAAAWP+QGLI++FR  +E+RI
Sbjct: 419 YDIMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRHEMEDRI 476


>gi|125601292|gb|EAZ40868.1| hypothetical protein OsJ_25349 [Oryza sativa Japonica Group]
          Length = 514

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 86  LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 145

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 146 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 205

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L  A +E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 206 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 265

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 266 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 325

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 326 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 385

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 386 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 445

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 446 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 493


>gi|115473713|ref|NP_001060455.1| Os07g0645400 [Oryza sativa Japonica Group]
 gi|23307584|dbj|BAC16718.1| putative NADH dehydrogenase [Oryza sativa Japonica Group]
 gi|113611991|dbj|BAF22369.1| Os07g0645400 [Oryza sativa Japonica Group]
          Length = 504

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L  A +E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 316 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 436 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 483


>gi|329889336|ref|ZP_08267679.1| NADH oxidoreductase quinone, F subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328844637|gb|EGF94201.1| NADH oxidoreductase quinone, F subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 437

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/426 (66%), Positives = 336/426 (78%), Gaps = 2/426 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYG     L  +  RG W+    +L+ GRDWII  VK SGLRGRGGAGF
Sbjct: 4   ILQDKDRIFTNLYGFHDWGLEGAKKRGAWNATKDMLDLGRDWIIANVKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK   DRPHYLV+NADESEP TCKDR+IMRH+P  LIEG +IASFA+ AH 
Sbjct: 64  STGLKWSFMPKEVKDRPHYLVINADESEPATCKDREIMRHDPQLLIEGALIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+I ERE ++AAV + Y + L+G ++  G+D  + +HHGAGAYICGEETALLE
Sbjct: 124 CYIYLRGEYILERERMEAAVKQAYEAKLIGDDNVHGWDFHVYIHHGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGADWFAGFGRPNNTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L S+SGHVN PC VEE+MSI   +LIE H GG+RGGW+NL A+IPGG+S P +   Q   
Sbjct: 244 LMSLSGHVNTPCVVEEAMSIPLRQLIEDHGGGVRGGWENLKAIIPGGASCPVITREQAEV 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D ++EM S LGTA V VMD+STDI+KAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 304 ALMDFDSMREMRSSLGTAGVTVMDQSTDIVKAIARISYFFKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419
           V+ER+  G A   EIDLL +V+  +EG TICALGDAAAWP+QGLI++FR  IEERI  Y 
Sbjct: 364 VLERMAIGDADPSEIDLLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRHEIEERIHTYR 423

Query: 420 -HRCNF 424
             R NF
Sbjct: 424 SRRANF 429


>gi|125559373|gb|EAZ04909.1| hypothetical protein OsI_27090 [Oryza sativa Indica Group]
          Length = 529

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 101 LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 160

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 161 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 220

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L  A +E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 221 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 280

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 281 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 340

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 341 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 400

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 401 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 460

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 461 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 508


>gi|67459570|ref|YP_247194.1| NADH dehydrogenase I subunit F [Rickettsia felis URRWXCal2]
 gi|75536030|sp|Q4UKA6|NUOF_RICFE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|67005103|gb|AAY62029.1| NADH dehydrogenase I chain F [Rickettsia felis URRWXCal2]
          Length = 422

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 295/420 (70%), Positives = 337/420 (80%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG WDN   +L+KGR++II EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWDNTKALLDKGREFIIEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S +P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SAKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGAND 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLVKG AQK EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IEERI  +
Sbjct: 359 RVMMRLVKGNAQKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIKGW 418


>gi|163793192|ref|ZP_02187168.1| NADH dehydrogenase subunit D [alpha proteobacterium BAL199]
 gi|159181838|gb|EDP66350.1| NADH dehydrogenase subunit D [alpha proteobacterium BAL199]
          Length = 434

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 287/420 (68%), Positives = 333/420 (79%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTN+YG     L  +  RG W N   +L +  + ++  VKASGLRGRGGAGF
Sbjct: 1   MLKDDDRIFTNVYGWFDWGLDGARKRGDWSNTKALLAQTPEELVEAVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK   ++PHYLVVNADESEPGTCKDRDI+RHEPH LIEGC+I  +++ A  
Sbjct: 61  PTGLKWSFMPKEVKEKPHYLVVNADESEPGTCKDRDILRHEPHKLIEGCLIGGYSMRAKA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E ++LQAA+D+ Y +GL+G N+   GYD D+ +H GAGAYICGEETALL
Sbjct: 121 AYIYIRGEFYNEAQNLQAAIDQAYDAGLIGKNACGSGYDFDVFLHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAVVPTILRRG  W++  GR  N GT
Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVVPTILRRGPEWFAALGRPKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE + I   ELI+KH GG+ GGWDNLL VIPGGSSVP LP     
Sbjct: 241 KLFCISGHVNNPCNVEEELGIPLRELIDKHAGGVIGGWDNLLGVIPGGSSVPVLPKSICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E+ SGLGTAAVIVM++STDI+KAI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDSLREVRSGLGTAAVIVMNQSTDIVKAIARLSAFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+V+G A   EID+L EVS+ IEG TICALGDAAAWP+QGLI++FRP +E RI  Y
Sbjct: 361 RVMERMVRGEADVDEIDVLEEVSRQIEGHTICALGDAAAWPVQGLIRHFRPEMERRIAAY 420


>gi|144899470|emb|CAM76334.1| NADH-quinone oxidoreductase, F subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 425

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 300/417 (71%), Positives = 341/417 (81%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+    L  + SRG WDN   +L KGRD II EVK SGLRGRGGAGF
Sbjct: 1   MLRDQDRIFTNLYGIHDWRLKGAQSRGDWDNTKALLAKGRDAIIEEVKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLV+NADE EPGTCKDR+IMR +PH L+EG ++ASFAIGAH 
Sbjct: 61  GTGMKWSFMPKTEGARPHYLVINADEGEPGTCKDREIMRFDPHKLVEGALLASFAIGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGEF+RE E LQ A+DE YA+GL+G N+   G+D D+ VH GAGAYICGEE+AL+
Sbjct: 121 SYIYIRGEFVREAEHLQVAIDEAYAAGLIGKNACGSGWDFDLYVHRGAGAYICGEESALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAVVP ILRR  +W++G GR  N GT
Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVVPAILRRSGAWFAGLGRAKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE M I+F ELI+KHCGGIRGGWDNL+ VIPGG S P L    + 
Sbjct: 241 KLFCISGHVNKPCNVEEEMGISFRELIDKHCGGIRGGWDNLMGVIPGGCSTPVLTREVIE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+DGL+E GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 301 NCPMDFDGLREAGSGLGTAAVIVMDKSTDIVRAITRLSRFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+MER+ KG A   EIDLL +V+K +EG TICALGDAAAWPIQGLI+NFRP IE++I
Sbjct: 361 RMMERMDKGDATIEEIDLLQQVTKQVEGHTICALGDAAAWPIQGLIRNFRPEIEKKI 417


>gi|330843279|ref|XP_003293586.1| ubiquinone oxidoreductase [Dictyostelium purpureum]
 gi|325076073|gb|EGC29892.1| ubiquinone oxidoreductase [Dictyostelium purpureum]
          Length = 477

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/420 (67%), Positives = 334/420 (79%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  +M RG W     I++KG+DWI+ E+ ASGLRGRGGAGF 
Sbjct: 50  LKDQDRIFTNLYGEHDVYLKGAMLRGDWYRTKDIIDKGKDWILKEMMASGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RPHYLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA FA+ A  A
Sbjct: 110 SGLKWSFMPKVLKGRPHYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGFAMKACAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E + L+ A++E Y +GL+G N S  GY  D+ VH GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFHYEAKVLEQAIEEAYKAGLIGENASGTGYKFDVYVHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA  GLYGCPTTV NVE++AV PTILRRG +W++GFGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFAGFGRPKNAGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   ELI+KHCGG+ GGW+NL  VIPGGSSVP LP      
Sbjct: 290 LYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWENLKGVIPGGSSVPVLPKNICDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L++  SGLGTAAVIVM++ TD+IKAI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 350 VLMDFDDLRKHRSGLGTAAVIVMNKETDMIKAIARLSKFYKHESCGQCTPCREGTGWLWD 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           + ERLV G A+  EID+L E+SK IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+ 
Sbjct: 410 ITERLVTGDAKLDEIDMLEEISKQIEGHTICALGDAAAWPVQGLIRSFRPEIEDRIKQFQ 469


>gi|148259937|ref|YP_001234064.1| NADH dehydrogenase I subunit F [Acidiphilium cryptum JF-5]
 gi|326403109|ref|YP_004283190.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum
           AIU301]
 gi|146401618|gb|ABQ30145.1| NADH dehydrogenase subunit F [Acidiphilium cryptum JF-5]
 gi|325049970|dbj|BAJ80308.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum
           AIU301]
          Length = 431

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/420 (67%), Positives = 339/420 (80%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+D+DRI+TNLYGL    L+ + +RG WD    IL +GRD II E+K+SGLRGRGGAGF
Sbjct: 1   MLSDRDRIYTNLYGLHDWRLAGARARGDWDGTKDILARGRDAIIEEIKSSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RP YLV+NADESEPGTCKDRDI+RHEPH L+EG +IA FA+GAH 
Sbjct: 61  PTGMKWSFMPKETDGRPSYLVINADESEPGTCKDRDILRHEPHKLVEGALIAGFAMGAHR 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           AFIYVRGE+  E ++LQAAVDE   +GLLG ++   G+  DI VH GAGAYICGEE+AL+
Sbjct: 121 AFIYVRGEYYNEYKNLQAAVDEAREAGLLGDDACGSGWAFDITVHRGAGAYICGEESALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA +GLYGCPTTVNNVE+IA V TI+RRGA+W+S  GR  N GT
Sbjct: 181 ESIEGKKGLPRMKPPFPAALGLYGCPTTVNNVETIAGVATIMRRGAAWFSALGRPKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEKH GG+RGGWDNL AVIPGGSSV  +P     
Sbjct: 241 KIFCISGHVNRPCNVEEELGIPLRELIEKHAGGVRGGWDNLQAVIPGGSSVHMIPKSVCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+E  +GLGTAAVIVMD+STD+I+AI RL+ FYKHESCGQCTPCREGTGWMM
Sbjct: 301 TVLMDYDSLREQRTGLGTAAVIVMDKSTDLIRAIARLAAFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M RLV+G A+  +IDLL +V+K +EG TIC LGDAAAWPIQGL+++FRP++E+RI  Y
Sbjct: 361 RMMYRLVEGRAEIADIDLLEQVTKQVEGHTICPLGDAAAWPIQGLLRHFRPVVEQRIADY 420


>gi|114569910|ref|YP_756590.1| NADH dehydrogenase I subunit F [Maricaulis maris MCS10]
 gi|114340372|gb|ABI65652.1| NADH dehydrogenase subunit F [Maricaulis maris MCS10]
          Length = 437

 Score =  598 bits (1542), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 280/419 (66%), Positives = 334/419 (79%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNL+G     L  +  RG W+   +IL++GRDWII  +KASGLRGRGGAGF
Sbjct: 5   LLQDKDRIFTNLFGHHSPDLEGAKQRGCWNGTTEILQQGRDWIIENMKASGLRGRGGAGF 64

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASF++ AH 
Sbjct: 65  PTGLKWSFMPKEVGARPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFSMQAHA 124

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ ER +++ AV E Y + L+G ++  G+   + +HHGAGAYICGEETALLE
Sbjct: 125 CYIYLRGEYVTERLAMEKAVKEAYEAKLIGDDNIHGWPFHVYIHHGAGAYICGEETALLE 184

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN GLYGCPTTVNNVESIAV  TILRRGA W++ FGRE N GTK
Sbjct: 185 SLEGKKGQPRLKPPFPANAGLYGCPTTVNNVESIAVAGTILRRGAEWFASFGRERNVGTK 244

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FSISGHVN PC VEE+MSI    LIE H GG+RGGWDNL AVIPGGSSV  LP      
Sbjct: 245 IFSISGHVNNPCNVEEAMSIPMKTLIETHAGGVRGGWDNLKAVIPGGSSVSLLPKDICDD 304

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVMD+STD++KAI R+S FY+HESCGQCTPCREGTGWM R
Sbjct: 305 VLMDFDALSAHKSGLGTAAVIVMDKSTDVVKAIARISYFYRHESCGQCTPCREGTGWMWR 364

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ R+ +G +   EID+L +V+  +EG TICALGDAAAWP+QGLI++FR  IE+RI+ Y
Sbjct: 365 VLTRMSRGESTIEEIDMLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRSEIEDRINNY 423


>gi|15242306|ref|NP_196470.1| CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster
           binding / FMN binding / NAD or NADH binding / NADH
           dehydrogenase (ubiquinone)/ oxidoreductase, acting on
           NADH or NADPH [Arabidopsis thaliana]
 gi|9759347|dbj|BAB10002.1| NADH dehydrogenase [Arabidopsis thaliana]
 gi|20260144|gb|AAM12970.1| NADH dehydrogenase [Arabidopsis thaliana]
 gi|30387597|gb|AAP31964.1| At5g08530 [Arabidopsis thaliana]
 gi|332003932|gb|AED91315.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Arabidopsis
           thaliana]
          Length = 486

 Score =  598 bits (1541), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 280/408 (68%), Positives = 329/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 58  LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD ++ +H GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P      
Sbjct: 298 LFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>gi|194700414|gb|ACF84291.1| unknown [Zea mays]
 gi|195621570|gb|ACG32615.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays]
 gi|238010292|gb|ACR36181.1| unknown [Zea mays]
          Length = 504

 Score =  597 bits (1540), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 281/408 (68%), Positives = 329/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L+EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 436 IMERLKVGDAKLEEIDMLHEVTKQIEGHTICALGDAAAWPVQGLIRHF 483


>gi|21593325|gb|AAM65274.1| NADH dehydrogenase [Arabidopsis thaliana]
          Length = 486

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/408 (68%), Positives = 328/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 58  LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD ++ +H GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF IS HVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P      
Sbjct: 298 LFCISXHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>gi|51473234|ref|YP_066991.1| NADH dehydrogenase I subunit F [Rickettsia typhi str. Wilmington]
 gi|81390307|sp|Q68XY3|NUOF_RICTY RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|51459546|gb|AAU03509.1| NADH dehydrogenase (ubiquinone) subunit F [Rickettsia typhi str.
           Wilmington]
          Length = 421

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/420 (69%), Positives = 336/420 (80%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IF NLYG Q   L  S  RG W N   +L+KGRD+II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFINLYGQQSYDLKSSKKRGDWYNTKALLDKGRDFIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC+IASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNMQRALDEAYTEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC +EE+M I   ELIEK+ GG+RGGWDNL A+IPGG+SVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNIEEAMGIPLKELIEKYAGGVRGGWDNLKAIIPGGASVPLLPK-SLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +GSGLGT  +IVMDRSTDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVEMDFDSLRTVGSGLGTGGIIVMDRSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLV G A+K EI+ L  V+K IEG TICALGDAAAWPIQGLI++FR  IEERI  +
Sbjct: 359 RVMMRLVNGNAKKTEIETLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEERIKNF 418


>gi|296536151|ref|ZP_06898279.1| NADH-quinone oxidoreductase subunit F [Roseomonas cervicalis ATCC
           49957]
 gi|296263522|gb|EFH10019.1| NADH-quinone oxidoreductase subunit F [Roseomonas cervicalis ATCC
           49957]
          Length = 435

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/422 (68%), Positives = 333/422 (78%), Gaps = 2/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYGL   +L ++  RG WD    I+ KGRDWII E+K SGLRGRGGAGF 
Sbjct: 3   LSDKDRIFTNLYGLHPWNLKEARRRGSWDGTAAIIAKGRDWIIEEMKQSGLRGRGGAGFP 62

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D RP YLVVN DESEPGTCKDRDI+R++PH LIEGC+ A   +GAH 
Sbjct: 63  TGMKWSFMPKSNPDGRPSYLVVNGDESEPGTCKDRDIIRNDPHLLIEGCLYAGVGMGAHA 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IYVRGE+  E + LQAA+DE Y +GLLG N+   G+D D+ VH GAGAYICGEETAL+
Sbjct: 123 GYIYVRGEYYNEIQILQAAIDEAYEAGLLGPNAAGSGWDFDLYVHRGAGAYICGEETALI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA VGLYGCPTTVNNVE+IAVVP IL+RGASW+S FGR  N GT
Sbjct: 183 ESLEGKKGMPRLKPPFPAAVGLYGCPTTVNNVETIAVVPAILKRGASWFSSFGRPKNVGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F I GHVN PC VE  MSI   ELIE++ GG+RGGWDNLLAVIPGGSS P LP     
Sbjct: 243 KIFCIQGHVNKPCNVEAEMSIPMRELIERYAGGVRGGWDNLLAVIPGGSSTPLLPKHICD 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E  SGLGTA VIVMD+STDIIKAI RL+ FYKHESCGQCTPCREG GW  
Sbjct: 303 DVLMDFDALREHKSGLGTAGVIVMDKSTDIIKAIARLAQFYKHESCGQCTPCREGMGWQK 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M+R+V+G A+  EIDLL  V++ IEG TICAL D   WP+QGLI++FRPL+EERI QY
Sbjct: 363 RLMDRMVEGRAEIEEIDLLEGVTRQIEGHTICALADGGVWPVQGLIRHFRPLMEERIRQY 422

Query: 420 HR 421
            +
Sbjct: 423 KQ 424


>gi|226529035|ref|NP_001141093.1| hypothetical protein LOC100273176 [Zea mays]
 gi|194702602|gb|ACF85385.1| unknown [Zea mays]
          Length = 504

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 280/408 (68%), Positives = 328/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   EL+E+HCGG+RGGWDNLLAVIP GSSVP LP      
Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPSGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L+EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 436 IMERLKVGDAKLEEIDMLHEVTKQIEGHTICALGDAAAWPVQGLIRHF 483


>gi|225708652|gb|ACO10172.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Osmerus
           mordax]
          Length = 472

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 278/420 (66%), Positives = 336/420 (80%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+DQDRIFTNLYG     L  ++SRG W    +IL KG DWIINE+K+SGLRGRGGAGF 
Sbjct: 46  LSDQDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGVDWIINEIKSSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A   +GA  A
Sbjct: 106 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRCMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A++E YA+GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNESSNLQVAINEAYANGLIGRNACGSGYDFDVFVMRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 226 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN P TVEE MSI   ELIE+H GG+RGGWDNLLAVIPGGSS P +P      
Sbjct: 286 LFNISGHVNTPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAVIPGGSSTPMIPRSVCET 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  +GLGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG  WM  
Sbjct: 346 VLMDFDGLIQAQTGLGTAAIIVMDKSTDVIKAIARLIEFYKHESCGQCTPCREGVDWMNT 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V+G A++ EID+++E+SK IEG TICALGD AAWP+QGLI++FRP++E RI ++ 
Sbjct: 406 MMWRFVRGDAKEAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPVMESRIAEFQ 465


>gi|238650711|ref|YP_002916564.1| NADH dehydrogenase I subunit F [Rickettsia peacockii str. Rustic]
 gi|238624809|gb|ACR47515.1| NADH dehydrogenase I subunit F [Rickettsia peacockii str. Rustic]
          Length = 421

 Score =  595 bits (1534), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/420 (69%), Positives = 335/420 (79%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK   ++  YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G NS   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQHALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLVKG  +K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI  Y
Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418


>gi|239948357|ref|ZP_04700110.1| NADH-quinone oxidoreductase subunit F [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922633|gb|EER22657.1| NADH-quinone oxidoreductase subunit F [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 417

 Score =  595 bits (1534), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 293/417 (70%), Positives = 336/417 (80%), Gaps = 3/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+II EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIIEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGAND 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+  +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNETSNIQRALDEAYKEGLIGKNACGSGFYCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+R GWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRDGWDNLKAIIPGGSSVPLLPK-SLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM RLVKG A+K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IEERI
Sbjct: 359 RVMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERI 415


>gi|15603992|ref|NP_220507.1| NADH dehydrogenase I subunit F [Rickettsia prowazekii str. Madrid
           E]
 gi|7387969|sp|Q9ZE33|NUOF_RICPR RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|3860683|emb|CAA14584.1| NADH DEHYDROGENASE I CHAIN F (nuoF) [Rickettsia prowazekii]
 gi|292571708|gb|ADE29623.1| NADH dehydrogenase I chain F [Rickettsia prowazekii Rp22]
          Length = 421

 Score =  595 bits (1533), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 289/420 (68%), Positives = 336/420 (80%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNLYG Q   L  S  RG W N   +++KGRD+II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLYGQQSYDLKSSQKRGDWYNTKALIDKGRDFIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC+IASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANT 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNMQRALDEAYKEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC +EE M +   ELIEK+ GG+RGGW+NL A+IPGG+SVP LP   + 
Sbjct: 240 KVFCISGHVNKPCNIEEVMGVPLKELIEKYAGGVRGGWNNLKAIIPGGASVPLLPK-SLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVEMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLV G A+K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE+RI  +
Sbjct: 359 RVMMRLVNGNAKKNEIDTLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEQRIKSF 418


>gi|157828027|ref|YP_001494269.1| NADH dehydrogenase I subunit F [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932725|ref|YP_001649514.1| NADH dehydrogenase I subunit F [Rickettsia rickettsii str. Iowa]
 gi|166918576|sp|A8GQT6|NUOF_RICRS RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|27312012|gb|AAO00970.1| NADH dehydrogenase I chain F [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800508|gb|ABV75761.1| NADH dehydrogenase I chain F [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907812|gb|ABY72108.1| NADH-quinone oxidoreductase chain F [Rickettsia rickettsii str.
           Iowa]
          Length = 421

 Score =  594 bits (1531), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/420 (69%), Positives = 334/420 (79%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK   ++  YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G NS   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLVKG   K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI  Y
Sbjct: 359 RVMMRLVKGNVTKSEIDELLNVTKAIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418


>gi|289743527|gb|ADD20511.1| NADH dehydrogenase flavoprotein 1 ubiquinone [Glossina morsitans
           morsitans]
          Length = 474

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 278/419 (66%), Positives = 331/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L+ ++ RG W    +I+ KG DWIINE+K SGLRGRGGAGF 
Sbjct: 50  LADQDRIFTNLYGRHDWRLNGALKRGDWYKTKEIVLKGADWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA+ A
Sbjct: 110 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQIAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGAWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSIT  ELIE+H GG+ GGW+NLLAVIPGGSS P +P      
Sbjct: 290 LFNISGHVNTPCTVEEEMSITLKELIERHAGGVCGGWENLLAVIPGGSSTPLIPKKVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DGL    + LGTAA+IVMD+STDIIKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 AIMDFDGLIAAQTSLGTAAIIVMDKSTDIIKAIARLIEFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R V G AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y
Sbjct: 410 IMARFVSGNAQAAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKY 468


>gi|157825290|ref|YP_001493010.1| NADH dehydrogenase I subunit F [Rickettsia akari str. Hartford]
 gi|166918572|sp|A8GM77|NUOF_RICAH RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|157799248|gb|ABV74502.1| NADH dehydrogenase I chain F [Rickettsia akari str. Hartford]
          Length = 423

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 292/420 (69%), Positives = 337/420 (80%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG WDN   +L+KGRD+II E+K SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGGQIHDLKSSKKRGDWDNTKALLDKGRDFIIEEIKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y   L+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDRLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRR ASW++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRRASWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLVKG A+K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE+RI  Y
Sbjct: 359 RVMIRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEDRIKSY 418


>gi|194760181|ref|XP_001962320.1| GF15407 [Drosophila ananassae]
 gi|190616017|gb|EDV31541.1| GF15407 [Drosophila ananassae]
          Length = 477

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +I+ KG DWIINE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG +W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGNWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ QY
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEVEKRMQQY 468


>gi|15892078|ref|NP_359792.1| NADH dehydrogenase I subunit F [Rickettsia conorii str. Malish 7]
 gi|20139048|sp|Q92JB2|NUOF_RICCN RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|15619200|gb|AAL02693.1| NADH dehydrogenase I chain F [Rickettsia conorii str. Malish 7]
          Length = 421

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/417 (69%), Positives = 334/417 (80%), Gaps = 3/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK   ++  YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G NS   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM RLVKG  +K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI
Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARI 415


>gi|34580891|ref|ZP_00142371.1| NADH dehydrogenase I chain F [Rickettsia sibirica 246]
 gi|28262276|gb|EAA25780.1| NADH dehydrogenase I chain F [Rickettsia sibirica 246]
          Length = 421

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/417 (69%), Positives = 334/417 (80%), Gaps = 3/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK   ++  YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G NS   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNVQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM RLVKG  +K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI
Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARI 415


>gi|229586353|ref|YP_002844854.1| NADH dehydrogenase I subunit F [Rickettsia africae ESF-5]
 gi|228021403|gb|ACP53111.1| NADH dehydrogenase I chain F [Rickettsia africae ESF-5]
          Length = 421

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/417 (69%), Positives = 334/417 (80%), Gaps = 3/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK   ++  YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNL-EQSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G NS   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-SLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM RLVKG  +K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI
Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARI 415


>gi|307105658|gb|EFN53906.1| NADH:ubiquinone oxidoreductase 51 kD subunit [Chlorella variabilis]
          Length = 444

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 276/409 (67%), Positives = 330/409 (80%), Gaps = 1/409 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG     +  +  RG W     I+ KG DW+++++K SGLRGRGGAGF 
Sbjct: 8   LADKDRIFTNIYGRHDPFIKGAEKRGDWYRTKDIVSKGSDWVVDQMKKSGLRGRGGAGFP 67

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC+IA   + A   
Sbjct: 68  SGLKWSFMPKVSDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLIAGVGMRARAG 127

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF+ ER+++  A+DE YA G LG N+   GYD D+ VH GAGAYICGEETAL+E
Sbjct: 128 YIYIRGEFVEERKAVMRAIDEAYAKGYLGRNACGSGYDFDLNVHWGAGAYICGEETALIE 187

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG  W++GFGR+NN GTK
Sbjct: 188 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNHGTK 247

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN P TVEE MSI+  ELIE+H GG+RGGWDNLLA+IPGGSSVP LP  Q   
Sbjct: 248 LFAISGHVNRPVTVEEEMSISLKELIERHAGGVRGGWDNLLAIIPGGSSVPMLPKAQCED 307

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LKE  SGLGTAAV+VMD+STD I+AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 308 VLMDFDALKERQSGLGTAAVMVMDKSTDPIEAIARLSYFYKHESCGQCTPCREGTGWLYD 367

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +M R+ KG A+  EID+L+E++K IEG TICALGDAAAWP+QGLI++FR
Sbjct: 368 IMTRMKKGDARVEEIDMLWELTKQIEGHTICALGDAAAWPVQGLIRHFR 416


>gi|219885535|gb|ACL53142.1| unknown [Zea mays]
          Length = 504

 Score =  592 bits (1525), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 279/408 (68%), Positives = 327/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  ++ RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGLHDPFLKGAVKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMR +PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRQDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 436 IMERLKVGDAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 483


>gi|283046718|ref|NP_001164305.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           [Tribolium castaneum]
 gi|270008216|gb|EFA04664.1| hypothetical protein TcasGA2_TC014119 [Tribolium castaneum]
          Length = 478

 Score =  592 bits (1525), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 275/423 (65%), Positives = 333/423 (78%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  ++ RG W    +IL KG DWIINE+K SGLRGRGGAGF 
Sbjct: 50  LSDEDRIFTNLYGKHDWRLKGALKRGDWYKTKEILLKGSDWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAKAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GLLG N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQVAIAEAYQAGLLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 230 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVSPTICRRGGTWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSITF EL+E+H GGI GGWDNLLA+IPGGSS P +P      
Sbjct: 290 LFNISGHVNRPCTVEEEMSITFKELVERHAGGIIGGWDNLLAIIPGGSSTPLIPKSVCED 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG  WM +
Sbjct: 350 VIMDFDGLVAAQTSLGTAAIIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGINWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++H
Sbjct: 410 IMYRFVDGNAKPEEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMRKFH 469

Query: 421 RCN 423
             N
Sbjct: 470 EQN 472


>gi|195473699|ref|XP_002089130.1| GE18950 [Drosophila yakuba]
 gi|194175231|gb|EDW88842.1| GE18950 [Drosophila yakuba]
          Length = 474

 Score =  591 bits (1524), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 276/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG  W++GFGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFAGFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+  + 
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469

Query: 421 R 421
           +
Sbjct: 470 K 470


>gi|195030314|ref|XP_001988013.1| GH10936 [Drosophila grimshawi]
 gi|193904013|gb|EDW02880.1| GH10936 [Drosophila grimshawi]
          Length = 476

 Score =  591 bits (1523), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/420 (66%), Positives = 330/420 (78%), Gaps = 2/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +I+ KG DWIINEVK SGLRGRGGAGF 
Sbjct: 49  LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEVKTSGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA  A+GA  A
Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 168

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G ++   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKDACGTGYDFDVFMHRGAGAYICGEETALIE 228

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 289 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPKKVCDD 348

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLIHFYKHESCGQCTPCREGIGWMNK 408

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q H
Sbjct: 409 IMERFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRM-QLH 467


>gi|118367869|ref|XP_001017144.1| NADH-quinone oxidoreductase, F subunit family protein [Tetrahymena
           thermophila]
 gi|89298911|gb|EAR96899.1| NADH-quinone oxidoreductase, F subunit family protein [Tetrahymena
           thermophila SB210]
          Length = 474

 Score =  591 bits (1523), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 280/421 (66%), Positives = 333/421 (79%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY      +  ++ RG W    +IL  G +WII+E+K SGLRGRGGAGF 
Sbjct: 35  LKDQDRIFTNLYRDGDPFVKGALKRGDWHQTKEILSNGPEWIIDEIKKSGLRGRGGAGFL 94

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+K+SFMPKV  D RP YLV+N+DESEPGTCKDR+I+R++PH L+EG ++  F++ A  
Sbjct: 95  SGLKYSFMPKVNPDGRPSYLVINSDESEPGTCKDREILRNDPHKLVEGALVVGFSMRARA 154

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   LQ A+DE YA G +G N+   GYD D+ +H GAGAYICGEET L+
Sbjct: 155 AYIYIRGEFWVEANILQQAIDEAYAKGFIGKNACGSGYDFDVYIHRGAGAYICGEETGLI 214

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK GQPR+KPPFPAN GLYGCPTTV NVE++AV PTI+RRGASW++ FGR NN GT
Sbjct: 215 ESIEGKAGQPRVKPPFPANAGLYGCPTTVTNVETVAVCPTIMRRGASWFASFGRPNNAGT 274

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PCTVEE MSI   EL+EKHCGG+RGGWDNLLAVIPGGSSVP +P     
Sbjct: 275 KLYCISGHVNNPCTVEEEMSIPLRELLEKHCGGVRGGWDNLLAVIPGGSSVPMMPKNVCD 334

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK +GSGLGTAAVIVMD+STD I AI RLS FYKHESCGQCTPCREGTGW++
Sbjct: 335 DVLMDFDALKAVGSGLGTAAVIVMDKSTDPIDAILRLSKFYKHESCGQCTPCREGTGWIV 394

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            VMERL+ G A   EID+L +V++ IE  TICALGDAAAWP+QGLIKNFR  IE+RID Y
Sbjct: 395 DVMERLLVGNADYAEIDMLQQVTQQIEMHTICALGDAAAWPVQGLIKNFREEIEDRIDSY 454

Query: 420 H 420
           H
Sbjct: 455 H 455


>gi|157803300|ref|YP_001491849.1| NADH dehydrogenase I subunit F [Rickettsia canadensis str. McKiel]
 gi|166918574|sp|A8EXI1|NUOF_RICCK RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|157784563|gb|ABV73064.1| NADH dehydrogenase I chain F [Rickettsia canadensis str. McKiel]
          Length = 420

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/417 (69%), Positives = 334/417 (80%), Gaps = 2/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IF NL+G Q   L  S  RG WDN   +L+KGRD+II EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFINLHGQQSHDLKSSKKRGDWDNTKALLDKGRDFIIEEVKQSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHCGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA+ GLYGCPTT+NNVESIAVVPTILRRGA+W++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPASFGLYGCPTTINNVESIAVVPTILRRGANWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE M I   ELIEK+ GG++GGW+NL A+IPGGSSVP +P     
Sbjct: 240 KVFCISGHVNKPCNVEEVMGIPLKELIEKYAGGVQGGWNNLKAIIPGGSSVPLIPKSICE 299

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVM++STDI+ AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 300 TVDMDFDSLRTAGSGLGTGGIIVMNQSTDIVYAIARLSKFYMHESCGQCTPCREGTGWMW 359

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVM RLVKG A+K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IEERI
Sbjct: 360 RVMMRLVKGNAKKSEIDQLLSVTKAIEGHTICALGDAAAWPIQGLIRHFRDEIEERI 416


>gi|195385529|ref|XP_002051457.1| GJ12140 [Drosophila virilis]
 gi|194147914|gb|EDW63612.1| GJ12140 [Drosophila virilis]
          Length = 476

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/419 (66%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +I+ KG DWIINE+K SGLRGRGGAGF 
Sbjct: 49  LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 168

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GY+ D+ +H GAGAYICGEETAL+E
Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYNFDVFMHRGAGAYICGEETALIE 228

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 289 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPRKVCDD 348

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 408

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+
Sbjct: 409 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQH 467


>gi|190895712|gb|ACE96369.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895718|gb|ACE96372.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895748|gb|ACE96387.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895754|gb|ACE96390.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895758|gb|ACE96392.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 408

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 279/405 (68%), Positives = 325/405 (80%), Gaps = 1/405 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 4   LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK+   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 64  SGLKWSFMPKISDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408


>gi|195115497|ref|XP_002002293.1| GI13499 [Drosophila mojavensis]
 gi|193912868|gb|EDW11735.1| GI13499 [Drosophila mojavensis]
          Length = 476

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/419 (66%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +I+ KG DWIINE+K SGLRGRGGAGF 
Sbjct: 49  LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 168

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GY+ D+ +H GAGAYICGEETAL+E
Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYNFDVFMHRGAGAYICGEETALIE 228

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 289 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPRKVCDD 348

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 408

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+
Sbjct: 409 IMTRFVKGDAQPSEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQH 467


>gi|194860015|ref|XP_001969499.1| GG10139 [Drosophila erecta]
 gi|190661366|gb|EDV58558.1| GG10139 [Drosophila erecta]
          Length = 474

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 275/421 (65%), Positives = 329/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGAMKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG  W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGVWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+  + 
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469

Query: 421 R 421
           +
Sbjct: 470 K 470


>gi|19920794|ref|NP_608987.1| CG9140 [Drosophila melanogaster]
 gi|7297065|gb|AAF52334.1| CG9140 [Drosophila melanogaster]
 gi|15291595|gb|AAK93066.1| GM14163p [Drosophila melanogaster]
 gi|220945776|gb|ACL85431.1| CG9140-PA [synthetic construct]
 gi|220955472|gb|ACL90279.1| CG9140-PA [synthetic construct]
          Length = 474

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 275/421 (65%), Positives = 329/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG  W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+  + 
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469

Query: 421 R 421
           +
Sbjct: 470 K 470


>gi|296218952|ref|XP_002755638.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 1 [Callithrix jacchus]
          Length = 464

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|281203657|gb|EFA77854.1| ubiquinone oxidoreductase [Polysphondylium pallidum PN500]
          Length = 481

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 279/420 (66%), Positives = 331/420 (78%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  +  RG W     I+ KG+DWI+ E+ ASGLRGRGGAGF 
Sbjct: 54  LKDQDRIFTNLYGEHDVYLKGAEKRGDWYRTKDIIGKGKDWILKEMMASGLRGRGGAGFP 113

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK  + RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA FA+ A  A
Sbjct: 114 SGLKWSFMPKQSTGRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGFAMRACAA 173

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E + L+ A+DE Y +G LG+N+   GY  D+ VH GAGAYICGEETAL+E
Sbjct: 174 YIYIRGEFHHEAKVLEKAIDEAYKAGYLGANACGTGYHFDVYVHRGAGAYICGEETALIE 233

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA  GLYGCPTTV NVE++AV PTILRRG SW++GFGR  N GTK
Sbjct: 234 SLEGKQGKPRLKPPFPAMSGLYGCPTTVTNVETVAVAPTILRRGGSWFAGFGRPKNSGTK 293

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   ELI+KHCGG+ GGWDNLL VIPGGSSVP +P      
Sbjct: 294 LYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLLGVIPGGSSVPVIPKDICDD 353

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+ + SGLGTAAVIVMD+STDII AI RLS FYKHESCGQC+PCREGTGW+  
Sbjct: 354 VLMDFDDLRRVRSGLGTAAVIVMDKSTDIIAAIARLSKFYKHESCGQCSPCREGTGWLWD 413

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           + ERLV G A+  E+D+L E+S+ IEG TICALGDAAAWP+QGLI+++RP IE+RI  + 
Sbjct: 414 ITERLVTGDAKLDEVDMLEEISRQIEGHTICALGDAAAWPVQGLIRHYRPEIEQRIQDFQ 473


>gi|296218954|ref|XP_002755639.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 2 [Callithrix jacchus]
          Length = 455

 Score =  588 bits (1517), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 26  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 85

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 86  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 145

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 265

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 325

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 386 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 444


>gi|190895700|gb|ACE96363.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895702|gb|ACE96364.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895708|gb|ACE96367.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895710|gb|ACE96368.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895714|gb|ACE96370.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895716|gb|ACE96371.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895720|gb|ACE96373.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895722|gb|ACE96374.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895724|gb|ACE96375.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895726|gb|ACE96376.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895728|gb|ACE96377.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895730|gb|ACE96378.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895732|gb|ACE96379.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895734|gb|ACE96380.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895736|gb|ACE96381.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895738|gb|ACE96382.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895740|gb|ACE96383.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895742|gb|ACE96384.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895744|gb|ACE96385.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895746|gb|ACE96386.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895752|gb|ACE96389.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895756|gb|ACE96391.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 408

 Score =  588 bits (1517), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 279/405 (68%), Positives = 324/405 (80%), Gaps = 1/405 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 4   LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 64  SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408


>gi|115502495|sp|Q0MQI4|NDUV1_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|111661795|gb|ABH12159.1| mitochondrial complex I subunit NDUFV1 [Pongo pygmaeus]
          Length = 464

 Score =  588 bits (1516), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVNYPCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNYPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|326429055|gb|EGD74625.1| NADH dehydrogenase flavoprotein 1 [Salpingoeca sp. ATCC 50818]
          Length = 463

 Score =  588 bits (1516), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 279/421 (66%), Positives = 328/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NLYG     L  +M RG W     I+ KG D+I+ EVK SGLRGRGGAGF 
Sbjct: 31  LQDSDRIFQNLYGKHDWGLKGAMKRGTWYKTKDIVLKGDDFILEEVKKSGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM     DRP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A  A+ A  A
Sbjct: 91  SGLKWSFMKGATDDRPKYLVVNADEGEPGTCKDREIMRHDPHMLIEGCLVAGRAMNARAA 150

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF +E  +LQ A++E Y +GL+G N+   GYD D+ +  GAGAYICGEETAL+E
Sbjct: 151 YIYIRGEFFQEASNLQVAINEAYDAGLIGKNACGSGYDFDVYLFRGAGAYICGEETALIE 210

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PRLKPPFPANVGL+GCPTTV NVE++AV PTILRRG  W++GFGR+ N GTK
Sbjct: 211 SLEGKTGKPRLKPPFPANVGLFGCPTTVANVETVAVAPTILRRGGDWFAGFGRKRNEGTK 270

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG+VN PC VEESMSIT  ELI+KHCGG+ GGWDNLL VIPGGSSVP LP      
Sbjct: 271 LFAISGNVNNPCVVEESMSITLRELIDKHCGGVTGGWDNLLGVIPGGSSVPVLPKHICDD 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVMD+S DII  I RLS FY HESCGQCTPCREGT W+ +
Sbjct: 331 VLMDFDALAAEKSGLGTAAVIVMDKSQDIIDCIARLSDFYVHESCGQCTPCREGTTWLAK 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R V+G A K EID+LYE+++ IEG TICALGDAAAWP+QGLI++FRP IE RID Y+
Sbjct: 391 VMHRFVRGDADKEEIDMLYELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIEARIDAYN 450

Query: 421 R 421
           +
Sbjct: 451 K 451


>gi|195434685|ref|XP_002065333.1| GK15392 [Drosophila willistoni]
 gi|194161418|gb|EDW76319.1| GK15392 [Drosophila willistoni]
          Length = 478

 Score =  588 bits (1516), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/420 (65%), Positives = 328/420 (78%), Gaps = 2/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWIINE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG  W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGPWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV  PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVKNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKSVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q H
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRM-QLH 468


>gi|198415470|ref|XP_002131638.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa [Ciona intestinalis]
          Length = 457

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/421 (65%), Positives = 327/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  +M RG W    +I+ KG DW++ ++K SGLRGRGGAGF 
Sbjct: 30  LKDQDRIFTNLYGRHDWKLKGAMQRGDWYKTKEIILKGNDWVLQQIKESGLRGRGGAGFP 89

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM +    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A  A+GA  A
Sbjct: 90  TGMKWSFMNRPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLVAGVAMGARAA 149

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +L  A+ E Y +GL+G +S   GYD DI VH GAGAYICGEET+L+E
Sbjct: 150 YIYIRGEFYNEASNLNVAIKEAYDAGLIGKDSCGSGYDFDIFVHRGAGAYICGEETSLIE 209

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA VG++GCPTTV NVE++AV PTI RR   W++GFGRE N GTK
Sbjct: 210 SLEGKQGKPRLKPPFPAEVGVFGCPTTVANVETVAVAPTICRRTPQWFAGFGRERNTGTK 269

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE+MSI   ELIE+HCGG+RGGWDNLL VIPGGSS P LP      
Sbjct: 270 LFNISGHVNHPCTVEETMSIPMKELIERHCGGVRGGWDNLLCVIPGGSSTPLLPKNICDD 329

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L E+ SGLGTAA+IVMD+STD+I+AI RL  FYKHESCGQCTPCREG  WM  
Sbjct: 330 VLMDFDALVEVTSGLGTAALIVMDKSTDVIRAIARLMEFYKHESCGQCTPCREGVTWMND 389

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            ++R  +G A   EID L+E+SK +EG TICALGD AAWP QGLI++ RP+IEER+  YH
Sbjct: 390 TLQRFTRGDADPEEIDSLWEISKQVEGHTICALGDGAAWPAQGLIRHMRPVIEERMKAYH 449

Query: 421 R 421
           +
Sbjct: 450 Q 450


>gi|158299072|ref|XP_319184.4| AGAP010039-PA [Anopheles gambiae str. PEST]
 gi|157014192|gb|EAA13847.5| AGAP010039-PA [Anopheles gambiae str. PEST]
          Length = 472

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/421 (66%), Positives = 331/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 45  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWILNEMKVSGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 105 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 165 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 225 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGTWFASFGRTRNSGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GGIRGGWDNLL +IPGGSS P +P      
Sbjct: 285 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGIRGGWDNLLGIIPGGSSTPVIPKSVCED 344

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  + LGTAA+IVMD+STDIIKAI RL +FYKHESCGQCTPCREG  WM +
Sbjct: 345 VLMDFDGLVQAQTSLGTAAIIVMDKSTDIIKAISRLIMFYKHESCGQCTPCREGIAWMNK 404

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ QY 
Sbjct: 405 IMHRFVTGNARPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIESRMKQYE 464

Query: 421 R 421
           +
Sbjct: 465 Q 465


>gi|190895704|gb|ACE96365.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895706|gb|ACE96366.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 408

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/405 (68%), Positives = 323/405 (79%), Gaps = 1/405 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 4   LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 64  SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLE K+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 184 SLEVKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408


>gi|66805535|ref|XP_636489.1| ubiquinone oxidoreductase [Dictyostelium discoideum AX4]
 gi|74852419|sp|Q54I90|NDUV1_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|60464845|gb|EAL62961.1| ubiquinone oxidoreductase [Dictyostelium discoideum AX4]
          Length = 479

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/421 (65%), Positives = 331/421 (78%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +++RG W     I++KG+DWI+ E+ ASGLRGRGGAGF 
Sbjct: 51  LKDKDRIFTNLYGEHDVYLKGAIARGDWYKTKNIIDKGKDWILKEMMASGLRGRGGAGFP 110

Query: 62  TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK  S DRP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A  
Sbjct: 111 SGLKWSFMPKTTSKDRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACA 170

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E + L+ A+DE Y +GL+G N+   GY  D+ VH GAGAYICGEETAL+
Sbjct: 171 AYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHRGAGAYICGEETALI 230

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G+PRLKPPFPA  GLYGCPTTV NVE++AV PTILRRG +W++ FGR  N GT
Sbjct: 231 ESIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGT 290

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELI+KHCGG+ GGWDNL  VIPGGSSVP LP     
Sbjct: 291 KLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKGVIPGGSSVPVLPKNICD 350

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L++  SGLGTAAVIVM++ TD+I AI RLS FYKHESCGQCTPCREG GW+ 
Sbjct: 351 NVLMDFDDLRQHRSGLGTAAVIVMNKETDMIAAIARLSKFYKHESCGQCTPCREGVGWLY 410

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            + +RLV G A+  EID L E+S+ IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+
Sbjct: 411 DITDRLVTGNAKPDEIDSLEEISRQIEGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQF 470

Query: 420 H 420
            
Sbjct: 471 Q 471


>gi|193587168|ref|XP_001946240.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like [Acyrthosiphon pisum]
          Length = 482

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 279/423 (65%), Positives = 329/423 (77%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D DRIFTNLYG     L  ++ RG W    +IL KG D+IINEVK SGLRGRGGAGF 
Sbjct: 53  LSDSDRIFTNLYGRHDWQLKGALKRGDWYKTKEILIKGTDYIINEVKTSGLRGRGGAGFP 112

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A  A+GA  A
Sbjct: 113 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLVAGRAMGACAA 172

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ VH GAGAYICGEETAL+E
Sbjct: 173 YIYIRGEFYNEASNLQQAICEAYQAGLIGKNACNSGYDFDVFVHRGAGAYICGEETALIE 232

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W+ G GR  N GTK
Sbjct: 233 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGAWFLGLGRPRNSGTK 292

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GGI GGWDNLLAVIPGGSS P +P      
Sbjct: 293 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGIIGGWDNLLAVIPGGSSTPLIPKHVCET 352

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DGL    + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG  WM +
Sbjct: 353 AIMDFDGLVAAQTSLGTAALIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGINWMNK 412

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E R+ +Y 
Sbjct: 413 IMYRFVDGQAQSSEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELECRMKKYQ 472

Query: 421 RCN 423
             N
Sbjct: 473 EQN 475


>gi|115392085|ref|NP_001065293.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Pan troglodytes]
 gi|115502494|sp|Q0MQI6|NDUV1_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|111661791|gb|ABH12157.1| mitochondrial complex I subunit NDUFV1 [Pan troglodytes]
          Length = 464

 Score =  585 bits (1509), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|73982785|ref|XP_864381.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 7 [Canis familiaris]
          Length = 457

 Score =  585 bits (1508), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 28  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 88  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 147

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 148 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 207

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 208 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 267

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 268 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 327

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 328 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 387

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 388 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 446


>gi|311247118|ref|XP_003122486.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 1 [Sus scrofa]
          Length = 464

 Score =  585 bits (1508), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Q+
Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQQF 453


>gi|311247120|ref|XP_003122487.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 2 [Sus scrofa]
          Length = 455

 Score =  585 bits (1508), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 26  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 85

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 86  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 145

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 265

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 325

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Q+
Sbjct: 386 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQQF 444


>gi|328871524|gb|EGG19894.1| ubiquinone oxidoreductase [Dictyostelium fasciculatum]
          Length = 473

 Score =  585 bits (1507), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/425 (65%), Positives = 330/425 (77%), Gaps = 1/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +++RG W     ++ KG+DWII E+ ASGLRGRGGAGF 
Sbjct: 46  LKDKDRIFTNLYGEHDVYLKGAIARGDWYRTKDLIGKGKDWIIKEMMASGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK  + RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A  A
Sbjct: 106 SGLKWSFMPKQSTGRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLVAGFAMRACAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E + ++ A+ E Y +G LG N+   GY  D  VH GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFHLEAKVMEQAIAEAYKAGYLGENACGTGYKFDCYVHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA  GLYGCPTTV NVE++AV PTILRRG +W++GFGR  N GTK
Sbjct: 226 SLEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFAGFGRPKNSGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELI+KHCGG+ GGWDNLL +IPGGSSVP LP      
Sbjct: 286 LFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLLGIIPGGSSVPVLPKDICNE 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+ + SGLGTAAV VMD+STDI+ AI RLS FYKHESCGQCTPCREGTGWM  
Sbjct: 346 VLMDFDDLRRVRSGLGTAAVTVMDKSTDIVGAIARLSKFYKHESCGQCTPCREGTGWMWD 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLV G A+  EID+L E+++ +EG TICALGDAAAWPIQGL+++FRP +E RI  + 
Sbjct: 406 VMERLVTGDAKLDEIDMLEEITRQVEGHTICALGDAAAWPIQGLLRHFRPEVEARIHSFQ 465

Query: 421 RCNFQ 425
               Q
Sbjct: 466 ATKKQ 470


>gi|119595060|gb|EAW74654.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform
           CRA_c [Homo sapiens]
          Length = 457

 Score =  585 bits (1507), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 28  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 88  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 147

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 148 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 207

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 208 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 267

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 268 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 327

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 328 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 387

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 388 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 446


>gi|20149568|ref|NP_009034.2| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           isoform 1 precursor [Homo sapiens]
 gi|20455501|sp|P49821|NDUV1_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH dehydrogenase
           flavoprotein 1; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|3095113|gb|AAC39722.1| NADH:ubiquinone dehydrogenase 51 kDa subunit [Homo sapiens]
 gi|3136152|gb|AAC39750.1| NADH:ubiquinone dehydrogenase 51 kDa subunit [Homo sapiens]
 gi|5138912|gb|AAD40373.1| 51kDa subunit of NADH dehydrogenase [Homo sapiens]
 gi|15990511|gb|AAH15645.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Homo
           sapiens]
 gi|48145595|emb|CAG33020.1| NDUFV1 [Homo sapiens]
 gi|119595061|gb|EAW74655.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform
           CRA_d [Homo sapiens]
 gi|119595062|gb|EAW74656.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform
           CRA_d [Homo sapiens]
 gi|123993121|gb|ABM84162.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic
           construct]
 gi|124000113|gb|ABM87565.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic
           construct]
 gi|307684728|dbj|BAJ20404.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic
           construct]
 gi|311347578|gb|ADP90734.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347580|gb|ADP90735.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347582|gb|ADP90736.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347584|gb|ADP90737.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347586|gb|ADP90738.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347588|gb|ADP90739.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347590|gb|ADP90740.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347592|gb|ADP90741.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347594|gb|ADP90742.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347596|gb|ADP90743.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347598|gb|ADP90744.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347600|gb|ADP90745.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347602|gb|ADP90746.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347604|gb|ADP90747.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347606|gb|ADP90748.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347608|gb|ADP90749.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347610|gb|ADP90750.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347612|gb|ADP90751.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347614|gb|ADP90752.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347616|gb|ADP90753.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347618|gb|ADP90754.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347620|gb|ADP90755.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347622|gb|ADP90756.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347624|gb|ADP90757.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347626|gb|ADP90758.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347628|gb|ADP90759.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347630|gb|ADP90760.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347632|gb|ADP90761.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347634|gb|ADP90762.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347636|gb|ADP90763.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347638|gb|ADP90764.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347640|gb|ADP90765.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347642|gb|ADP90766.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347644|gb|ADP90767.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347646|gb|ADP90768.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347648|gb|ADP90769.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347650|gb|ADP90770.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347652|gb|ADP90771.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347654|gb|ADP90772.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347656|gb|ADP90773.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
          Length = 464

 Score =  585 bits (1507), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|254569928|ref|XP_002492074.1| hypothetical protein [Pichia pastoris GS115]
 gi|238031871|emb|CAY69794.1| hypothetical protein PAS_chr2-2_0462 [Pichia pastoris GS115]
 gi|308152238|emb|CBI83538.1| NUBM (51 kDa) subunit of mitochondrial NADH:ubiquinone
           oxidoreductase (complex I) [Pichia pastoris]
 gi|328351436|emb|CCA37835.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Pichia pastoris CBS
           7435]
          Length = 473

 Score =  585 bits (1507), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 271/419 (64%), Positives = 332/419 (79%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF N+Y   G+ L  S  RG W    +I+ KG +W+INE+KASGLRGRGGAGF 
Sbjct: 19  LKDSDRIFQNVYSKYGEDLKSSQQRGDWYKTKEIILKGHEWLINELKASGLRGRGGAGFP 78

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+K+SFMP   +  P YLVVNADE EPGTCKDR+I+R EPH L+EGC++A  A+ A  A
Sbjct: 79  SGLKYSFMPPNPNREPQYLVVNADEGEPGTCKDREIIRKEPHKLVEGCLLAGRAMNATAA 138

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A++E Y +GLLG N+   GYD D+ +H G GAYICGEETAL+E
Sbjct: 139 YIYIRGEFYNEAVALQTAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYICGEETALIE 198

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PRLKPPFPA VGL+G PTTV NVE++AV PTI RR  +W++ FGR+ N+GTK
Sbjct: 199 SIEGKAGKPRLKPPFPAGVGLFGRPTTVTNVETVAVTPTIFRRSGAWFASFGRDRNQGTK 258

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEESMSI   EL+EKHCGGI+GGWDNLL V+PGGSSVP +P      
Sbjct: 259 LFCISGHVNEPCTVEESMSIPLKELLEKHCGGIKGGWDNLLGVVPGGSSVPIMPKHVCED 318

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK++GSGLGTAAVIV+++ TDII+AI R S FYKHESCGQCTPCREGT ++ R
Sbjct: 319 VLMDFDALKDVGSGLGTAAVIVLNKQTDIIRAIQRFSAFYKHESCGQCTPCREGTTYLQR 378

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M+R V G A+++EIDL+YE+SK IEG TICALGDAAAWP+QGLIK+FRP + ERI QY
Sbjct: 379 MMDRFVTGQAKEKEIDLIYELSKEIEGHTICALGDAAAWPVQGLIKSFRPEMVERIKQY 437


>gi|260656005|ref|NP_001159574.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           isoform 2 precursor [Homo sapiens]
 gi|14198176|gb|AAH08146.1| NDUFV1 protein [Homo sapiens]
 gi|119595058|gb|EAW74652.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform
           CRA_a [Homo sapiens]
          Length = 455

 Score =  584 bits (1506), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 26  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 85

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 86  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 145

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 265

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 325

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 386 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 444


>gi|281353395|gb|EFB28979.1| hypothetical protein PANDA_010233 [Ailuropoda melanoleuca]
          Length = 440

 Score =  584 bits (1506), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 11  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 71  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 130

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 131 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVVRGAGAYICGEETALIE 190

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 191 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 250

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 251 LFNISGHVNHPCTVEEEMSVPLRELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 310

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 311 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 370

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 371 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 429


>gi|194218547|ref|XP_001917609.1| PREDICTED: similar to NADH dehydrogenase [Equus caballus]
          Length = 464

 Score =  584 bits (1506), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQSGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMHRF 453


>gi|115502493|sp|Q0MQI5|NDUV1_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|111661793|gb|ABH12158.1| mitochondrial complex I subunit NDUFV1 [Gorilla gorilla]
          Length = 464

 Score =  584 bits (1506), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+SGFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFSGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGW+NLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWENLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|160420036|dbj|BAF93481.1| NADH dehydrogenase flavoprotein 1 [Macaca fascicularis]
          Length = 464

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|328771741|gb|EGF81780.1| hypothetical protein BATDEDRAFT_31463 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 462

 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/422 (65%), Positives = 332/422 (78%), Gaps = 3/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D DRIFTNLYG     L  +  RG W    +I+ KG DWII+E+K SGLRGRGGAGF 
Sbjct: 39  LSDNDRIFTNLYGRHDFKLEGAKKRGDWYKTKEIILKGHDWIISEMKTSGLRGRGGAGFP 98

Query: 62  TGMKWSFM--PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           +G+KWSFM  P     RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++A  A+ A 
Sbjct: 99  SGLKWSFMNKPGGPDGRPRYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLLAGRAMNAT 158

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+RGEF  E  +LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEETAL
Sbjct: 159 ACYIYIRGEFYNEASNLQIAINEAYKAGLIGKNACGSGYDFDIYIHRGGGAYICGEETAL 218

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ES+EGK G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTILRRG SW++GFGRE N G
Sbjct: 219 IESIEGKAGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTILRRGGSWFAGFGRERNSG 278

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLL +IPGGSSVP LP    
Sbjct: 279 TKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLGIIPGGSSVPVLPRKMC 338

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A+MD+D L++M SGLGTAAVIVMD+STDI+ AI RLS FY+HESCGQCTPCREGT W+
Sbjct: 339 EDALMDFDSLRDMQSGLGTAAVIVMDKSTDIVHAISRLSAFYQHESCGQCTPCREGTTWL 398

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +M R  KG A+  EID++ E+S+ IEG TICALGDAAAWP+QGLI++FRP +E++I Q
Sbjct: 399 SNMMRRFEKGNAKVAEIDMIEELSRQIEGHTICALGDAAAWPVQGLIRHFRPEVEKKIMQ 458

Query: 419 YH 420
           + 
Sbjct: 459 FQ 460


>gi|190895750|gb|ACE96388.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 408

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 278/405 (68%), Positives = 323/405 (79%), Gaps = 1/405 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 4   LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 64  SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           +MERL  G A+  EID+L EV+K IEG TICALGDAAA P+QGLI
Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAARPVQGLI 408


>gi|327260438|ref|XP_003215041.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like [Anolis carolinensis]
          Length = 467

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/425 (66%), Positives = 334/425 (78%), Gaps = 1/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 39  LKDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWILNEIKTSGLRGRGGAGFP 98

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+GA  A
Sbjct: 99  TGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 158

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 159 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVARGAGAYICGEETALIE 218

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW+ GFGRE N GTK
Sbjct: 219 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFVGFGRERNSGTK 278

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG++GGWDNLLAVIPGGSS P +P      
Sbjct: 279 LFNISGHVNTPCTVEEEMSIPLRDLIERHAGGVKGGWDNLLAVIPGGSSTPLIPKSVCET 338

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  +GLGTAAVIVMD+STD+++AI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 339 VLMDFDGLIQAQTGLGTAAVIVMDKSTDLVRAIARLIEFYKHESCGQCTPCREGVDWMNK 398

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R VKG AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ QYH
Sbjct: 399 VMWRFVKGNAQVAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMRQYH 458

Query: 421 RCNFQ 425
               Q
Sbjct: 459 ESKAQ 463


>gi|167646790|ref|YP_001684453.1| NADH dehydrogenase subunit I F [Caulobacter sp. K31]
 gi|167349220|gb|ABZ71955.1| NADH-quinone oxidoreductase, F subunit [Caulobacter sp. K31]
          Length = 439

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/420 (69%), Positives = 340/420 (80%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYGLQ   L  +  RG W+    IL+ GRDWII+ +K SGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGLQDWGLEGAKKRGCWNGTKDILDAGRDWIIDNMKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   D RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH
Sbjct: 64  GTGLKWSFMPKEVKDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAH 123

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGE++RERE L+AA+ + Y + L+G N+  G+D D+ VHHGAGAYICGEETALL
Sbjct: 124 ACYIYIRGEYVREREVLEAAIKQAYEAKLIGKNNVHGWDFDLYVHHGAGAYICGEETALL 183

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYG PTTVNNVESIAV  TILRRGA+W++GFGR NN GT
Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNTGT 243

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGHVN PC VEE+MSI F +L+E HCGGIRGGW NL AVIPGGSSVP +PA Q  
Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLMEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ + SGLGTAAVIVMD+ TD+++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 304 DLPMDFDALRNLRSGLGTAAVIVMDKDTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+  G A  +EID L +V+  +EG TICALGDAAAWPIQGL ++FR  +E+RI  Y
Sbjct: 364 RVMERMATGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEDRIASY 423


>gi|90083182|dbj|BAE90673.1| unnamed protein product [Macaca fascicularis]
          Length = 464

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPAQGLIRHFRPELEERMQRF 453


>gi|170039879|ref|XP_001847747.1| NADH dehydrogenase flavoprotein 1, mitochondrial [Culex
           quinquefasciatus]
 gi|167863468|gb|EDS26851.1| NADH dehydrogenase flavoprotein 1, mitochondrial [Culex
           quinquefasciatus]
          Length = 474

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/421 (64%), Positives = 328/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL KG +WIINE KASGLRGRGGAGF 
Sbjct: 48  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTEWIINETKASGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA   +GA  A
Sbjct: 108 TGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRCMGARAA 167

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 168 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 228 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGAWFASFGRTRNSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL +IPGGSS P +P      
Sbjct: 288 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLGIIPGGSSTPIIPKSVCDD 347

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 348 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGIAWMHK 407

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ ++ 
Sbjct: 408 MMHRFVDGNARPDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKHE 467

Query: 421 R 421
           +
Sbjct: 468 Q 468


>gi|62897683|dbj|BAD96781.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa variant [Homo
           sapiens]
          Length = 464

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +G +G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGPIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|62510804|sp|Q8HXQ9|NDUV1_MACFA RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|23574759|dbj|BAC20599.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Macaca
           fascicularis]
          Length = 464

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYK+ESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKYESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|255947866|ref|XP_002564700.1| Pc22g06720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591717|emb|CAP97960.1| Pc22g06720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 495

 Score =  582 bits (1499), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  SM  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 46  LKDQDRIFTNLYGHHGADLKSSMKYGDWYRTKDIISKGDDWLISEIKASGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 166 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGSGYDFDVYIHRGMGAYICGEETS 225

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N 
Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN P TVEE MSI+  ELIEKHCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 286 GTKLFCISGHVNNPVTVEEEMSISLRELIEKHCGGVRGGWDNLLAVIPGGSSTPVIPKTV 345

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  +GLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 346 ADNQLMDFDALKDSQTGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+RL  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 406 TMQMMQRLETGNAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465

Query: 418 QYHR 421
           QY +
Sbjct: 466 QYEK 469


>gi|1408306|gb|AAB03672.1| ndufv1 [Dictyostelium discoideum]
          Length = 479

 Score =  582 bits (1499), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 274/421 (65%), Positives = 330/421 (78%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +++RG W     I++KG+DWI+ E+ ASGLRGRGGAGF 
Sbjct: 51  LKDKDRIFTNLYGEHDVYLKGAIARGDWYKTKNIIDKGKDWILKEMMASGLRGRGGAGFP 110

Query: 62  TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMP+  S DRP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A  
Sbjct: 111 SGLKWSFMPETTSKDRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACA 170

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E + L+ A+DE Y +GL+G N+   GY  D+ VH GAGAYICGEETAL+
Sbjct: 171 AYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHRGAGAYICGEETALI 230

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK+G+PRLKPPFPA  GLYGCPTTV NVE++AV PTILRRG +W++ FGR  N GT
Sbjct: 231 GSIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGT 290

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELI+KHCGG+ GGWDNL  VIPGGSSVP LP     
Sbjct: 291 KLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKGVIPGGSSVPVLPKNICD 350

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L++  SGLGTAAVIVM++ TD+I AI RLS FYKHESCGQCTPCREG GW+ 
Sbjct: 351 NVLMDFDDLRQHRSGLGTAAVIVMNKETDMIAAIARLSKFYKHESCGQCTPCREGVGWLY 410

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            + +RLV G A+  EID L E+S+ IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+
Sbjct: 411 DITDRLVTGNAKPDEIDSLEEISRQIEGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQF 470

Query: 420 H 420
            
Sbjct: 471 Q 471


>gi|298711911|emb|CBJ48598.1| NUOF homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus
           siliculosus]
          Length = 511

 Score =  581 bits (1498), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 271/416 (65%), Positives = 331/416 (79%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG Q   + D++ RG W    +I+  G DWI+ E+K SGLRGRGGAGF 
Sbjct: 54  LKDQDRIFTNLYGEQDWRVGDALKRGDWHQTKEIMWMGPDWIVQEMKDSGLRGRGGAGFP 113

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP +LVVNADESEPGTCKDR+IMR +PH L+EGC++A +A+ A  A
Sbjct: 114 SGLKWSFMPKNTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARAA 173

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+  E   +  A+ E Y  G LG N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 174 YIYIRGEYFNEAVVMDEAIHEAYQKGFLGKNACGSGYDFDVYLHRGAGAYICGEETALIE 233

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++G+PRLKPPFPANVG++GCPTTV NVE++AV PTILRRGASW++ FGR+NN GTK
Sbjct: 234 SLEGRQGKPRLKPPFPANVGVFGCPTTVTNVETVAVAPTILRRGASWFASFGRKNNHGTK 293

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN P  VEE MSIT  EL++KHCGG+RGGWDNL AVIPGGSSVP L       
Sbjct: 294 LFAISGHVNNPIVVEEEMSITLRELLDKHCGGVRGGWDNLQAVIPGGSSVPVLDINDCAD 353

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK+ GSGLGTAAV VMD+S D+I AI RL+ FYKHESCGQCTPCREGTGW+ +
Sbjct: 354 VMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCREGTGWLEQ 413

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ ++ KG A  REI +L E+S++IEG TICALGDAAAWP+QGLI+ F+P+IEERI
Sbjct: 414 MLVKMEKGEADTREIPMLEEISRSIEGHTICALGDAAAWPVQGLIRRFQPVIEERI 469


>gi|19526814|ref|NP_598427.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Mus musculus]
 gi|47117274|sp|Q91YT0|NDUV1_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|15928709|gb|AAH14818.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Mus musculus]
 gi|26344485|dbj|BAC35893.1| unnamed protein product [Mus musculus]
 gi|27469887|gb|AAH41682.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Mus musculus]
 gi|148701043|gb|EDL32990.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_b [Mus
           musculus]
          Length = 464

 Score =  581 bits (1498), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGPDWILGEMKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+    YD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++
Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRF 453


>gi|195146494|ref|XP_002014219.1| GL19080 [Drosophila persimilis]
 gi|194106172|gb|EDW28215.1| GL19080 [Drosophila persimilis]
          Length = 477

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG +WIINE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPNWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMQKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGAAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGTWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQH 468


>gi|167523547|ref|XP_001746110.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775381|gb|EDQ89005.1| predicted protein [Monosiga brevicollis MX1]
          Length = 463

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/421 (65%), Positives = 326/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  ++ RG W     I+E G D+I++EVK SGLRGRGGAGF 
Sbjct: 31  LADDDRVFQNLYGRHDWGLKGALKRGTWYKTKNIVEAGSDFILDEVKKSGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTL+EGC++A  A+GA  A
Sbjct: 91  SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLLEGCLVAGRAMGAQAA 150

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF +E  +LQ A++E Y  GL+G N+   GYD DI +  GAGAYICGEETAL+E
Sbjct: 151 YIYIRGEFFQEASNLQVAINEAYDKGLIGKNACGSGYDFDIFLFRGAGAYICGEETALIE 210

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG  W++ FGRE N GTK
Sbjct: 211 SIEGKTGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGDWFASFGRERNSGTK 270

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG+VN PC VEE MSI+  EL+EKHCGG+ GGWDNLL VIPGGSSVP LP      
Sbjct: 271 LFAISGNVNKPCVVEEEMSISLRELLEKHCGGVTGGWDNLLGVIPGGSSVPVLPKHICDD 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVMD+S DII  I RLS FY HESCGQCTPCREGT W+ +
Sbjct: 331 VMMDFDALVAEKSGLGTAAVIVMDKSQDIIDCIARLSDFYVHESCGQCTPCREGTTWLSK 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R V G A K EID+LYE+++ IEG TICALGDAAAWP+QGLI++FRP IE RID Y+
Sbjct: 391 VMRRFVSGDADKEEIDMLYELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIEARIDAYN 450

Query: 421 R 421
           +
Sbjct: 451 Q 451


>gi|125986851|ref|XP_001357188.1| GA21571 [Drosophila pseudoobscura pseudoobscura]
 gi|54645518|gb|EAL34256.1| GA21571 [Drosophila pseudoobscura pseudoobscura]
          Length = 477

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG +WIINE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPNWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMQKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGAAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGTWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKKVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQH 468


>gi|145258049|ref|XP_001401928.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|134074533|emb|CAK38826.1| mitochondrial proton-pumping NADH:ubiquinone reductase
           nuo51-Aspergillus niger
          Length = 496

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 273/424 (64%), Positives = 335/424 (79%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 46  LKDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGHDWLISELKASGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF +E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 166 NAAYIYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 225

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N 
Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI+  ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 286 GTKLFCISGHVNNPCTVEEEMSISLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKTI 345

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 346 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 406 TMQMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465

Query: 418 QYHR 421
           +Y +
Sbjct: 466 EYSK 469


>gi|70993752|ref|XP_751723.1| NADH-ubiquinone oxidoreductase, subunit F [Aspergillus fumigatus
           Af293]
 gi|66849357|gb|EAL89685.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           fumigatus Af293]
 gi|159125355|gb|EDP50472.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           fumigatus A1163]
          Length = 496

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/424 (64%), Positives = 331/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LRDQDRIFTNLYGHHGTDLKSAMKFGDWHRTKDIVLKGHDWLISEIKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +PH LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 167 TAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FG E N 
Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFSSFGAERNS 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 347 CDNQIMDFDSLKDSQSGLGTAAVIVMDKSTDIVRAISRLSKFYKHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 407 TAQMMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466

Query: 418 QYHR 421
           +Y R
Sbjct: 467 EYER 470


>gi|308510360|ref|XP_003117363.1| CRE-NUO-1 protein [Caenorhabditis remanei]
 gi|308242277|gb|EFO86229.1| CRE-NUO-1 protein [Caenorhabditis remanei]
          Length = 479

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +M+RG W    +I+ KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 46  LKDSDRIFTNLYGRHDYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I   A+GA  A
Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A++E Y +G LG +    GY+ D+ VH GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISG VN PCTVEE MS+   +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P      
Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDT 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG  W+ +
Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H
Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465

Query: 421 R 421
           +
Sbjct: 466 K 466


>gi|51230625|ref|NP_001003747.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Danio rerio]
 gi|50925098|gb|AAH78648.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Danio rerio]
 gi|94733524|emb|CAK04074.1| novel protein (zgc:86620) [Danio rerio]
          Length = 492

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/421 (65%), Positives = 334/421 (79%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL+KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 66  LADQDRIFTNLYGRHDWRLKGALRRGDWYKTKEILDKGVDWILNEIKTSGLRGRGGAGFP 125

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMR++PH LIEGC++A  A+GA  A
Sbjct: 126 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAA 185

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A++E YA+GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 186 YIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDFDVFVMRGAGAYICGEETALIE 245

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 246 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTK 305

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+RGGWDNLL VIPGGSS P +P      
Sbjct: 306 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWDNLLCVIPGGSSTPLIPQHVCDT 365

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAA+IVMD+STD+I+AI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 366 VLMDFDALIQAQTGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNK 425

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG A+  EID+++E+SK IEG TICALGD AAWP+QGLI++FRPL+E RI  + 
Sbjct: 426 MMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPLMESRIADFQ 485

Query: 421 R 421
           +
Sbjct: 486 Q 486


>gi|121707889|ref|XP_001271969.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           clavatus NRRL 1]
 gi|119400117|gb|EAW10543.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           clavatus NRRL 1]
          Length = 496

 Score =  579 bits (1493), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 273/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LRDQDRIFTNLYGHHGADLKSAMKFGDWHRTKDIVNKGDDWLISEIKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKGWDKDPRPRYLVINADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 167 NAAYIYIRGEFYHEATVLQQAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW++ FG E N 
Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFNSFGAERNS 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKAV 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STDII+AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 347 CDDQIMDFDSLKDSQSGLGTAAVIVMDKSTDIIRAISRLSKFYKHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 407 TAQIMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466

Query: 418 QYHR 421
           +Y +
Sbjct: 467 EYEQ 470


>gi|169868608|ref|XP_001840875.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coprinopsis cinerea
           okayama7#130]
 gi|116498033|gb|EAU80928.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 516

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 268/426 (62%), Positives = 333/426 (78%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN+Y      +  +MSRG W    +IL KG  WII  +K SGLRGRGGAGF 
Sbjct: 51  LKDQDRIFTNVYSRHDHGIKGAMSRGDWHKTKEILLKGDAWIIQTIKDSGLRGRGGAGFP 110

Query: 62  TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLV+NADE EPGTCKDR+I+R +PH LIEGC++A  A+ A
Sbjct: 111 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREILRGDPHKLIEGCLVAGRAMNA 170

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF +E   +Q A++E YA+G +G N+   GYD D+ VH GAGAYICGEETA
Sbjct: 171 NAAYIYIRGEFYQEASHVQQAINEAYAAGFIGKNACGSGYDFDVYVHRGAGAYICGEETA 230

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGR+ N 
Sbjct: 231 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGSWFASFGRQRNE 290

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PC VEE MSI   +LIEKHCGG+RGGWDNLL ++PGGSSVP +P   
Sbjct: 291 GTKLYCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVRGGWDNLLGIVPGGSSVPIIPKDV 350

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  +GLGT AVIVMD+STD+++AI R + FYKHESCGQCTPCREGT W
Sbjct: 351 CAEVLMDFDSLKDAQTGLGTGAVIVMDKSTDVVRAISRFADFYKHESCGQCTPCREGTTW 410

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M ++M+R+V+G A +REID+L E++K IEGRTICALGDAAAWPIQGL+++FRP +E RI 
Sbjct: 411 MKKMMDRMVEGRAHQREIDMLLELTKQIEGRTICALGDAAAWPIQGLMRHFRPEVERRIA 470

Query: 418 QYHRCN 423
           ++   N
Sbjct: 471 EFQAAN 476


>gi|290988111|ref|XP_002676765.1| predicted protein [Naegleria gruberi]
 gi|284090369|gb|EFC44021.1| predicted protein [Naegleria gruberi]
          Length = 480

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 268/420 (63%), Positives = 333/420 (79%), Gaps = 2/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLY    + +  +M RG W     ++ KG DWII+++K SGLRGRGGAGF+
Sbjct: 46  LKDKDRIFTNLYENFDRHIDGAMKRGDWFKTKDLINKGPDWIIDQIKKSGLRGRGGAGFN 105

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+K+SFMPK   D RP YLV+N+DESEPGTCKDR+I+R++PH L+EG ++  F + A  
Sbjct: 106 SGLKYSFMPKSNPDGRPSYLVINSDESEPGTCKDREIVRNDPHKLVEGALLVGFGMRARA 165

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   LQ A+DE Y  G LG N+   GY+ D+ VH GAGAYICGEETAL+
Sbjct: 166 AYIYIRGEFYNESRRLQEAIDEAYQKGFLGKNACGTGYEFDVYVHRGAGAYICGEETALI 225

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G+PRLKPPFPA VGL+ CPTTV NVE++AVVPTILRR   W++GFGR+NN GT
Sbjct: 226 ESIEGKQGKPRLKPPFPAGVGLFSCPTTVTNVETVAVVPTILRRSPEWFAGFGRKNNAGT 285

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL++ISGHVN PC VEE MSI   ELIE+H GG+RGGWDNLLA+IPGGSSVP +P     
Sbjct: 286 KLYAISGHVNTPCVVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLIPKEICE 345

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E+ SGLGTAAV+VMD+STDI+ AI RLS FY HESCGQCTPCREGTGW++
Sbjct: 346 TVLMDFDALREVQSGLGTAAVMVMDKSTDIVDAIARLSKFYAHESCGQCTPCREGTGWLL 405

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            +M+R+VKG A+  EID L EVS+ IEG TICALGDAAAWP+QGLI++FR  +E+RI +Y
Sbjct: 406 NMMDRMVKGNAEIEEIDTLEEVSRQIEGHTICALGDAAAWPVQGLIRHFRGEMEDRIKKY 465


>gi|17531727|ref|NP_496376.1| NADH Ubiquinone Oxidoreductase family member (nuo-1)
           [Caenorhabditis elegans]
 gi|3874218|emb|CAA90435.1| C. elegans protein C09H10.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 479

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +M+RG W    +I+ KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 46  LKDSDRIFTNLYGRHDYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I   A+GA  A
Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A++E Y +G LG +    GY+ D+ VH GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISG VN PCTVEE MS+   +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P      
Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDT 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG  W+ +
Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H
Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465

Query: 421 R 421
           +
Sbjct: 466 K 466


>gi|119500302|ref|XP_001266908.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Neosartorya
           fischeri NRRL 181]
 gi|119415073|gb|EAW25011.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Neosartorya
           fischeri NRRL 181]
          Length = 496

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LRDQDRIFTNLYGHHGADLKSAMKFGDWHRTKDIVLKGHDWLISEIKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +PH LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FG E N 
Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFSSFGAERNS 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSI 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  +GLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 347 CDNQIMDFDSLKDSQTGLGTAAVIVMDKSTDIVRAISRLSKFYKHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 407 TAQMMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466

Query: 418 QYHR 421
           +Y R
Sbjct: 467 EYER 470


>gi|3184148|emb|CAA76757.1| NADH:ubiquinone oxidoreductase 51-kD subunit [Homo sapiens]
          Length = 464

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 273/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH G + GGWD LLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGFVTGGWDYLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|58332830|ref|NP_001011491.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Xenopus
           (Silurana) tropicalis]
 gi|57033091|gb|AAH88876.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Xenopus
           (Silurana) tropicalis]
 gi|89269885|emb|CAJ83800.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 468

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/425 (64%), Positives = 333/425 (78%), Gaps = 1/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+KASGLRGRGGAGF 
Sbjct: 40  LSDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWILGEIKASGLRGRGGAGFP 99

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  ++GA  A
Sbjct: 100 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 159

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ AV E Y++GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 160 YIYIRGEFYNEASNLQVAVREAYSAGLIGRNACGSGYDFDVFVVRGAGAYICGEETALIE 219

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK
Sbjct: 220 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNAGTK 279

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 280 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAVIPGGSSTPLIPQSVCET 339

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAA+IVM++STDI++AI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 340 VLMDFDALVQAQTGLGTAAIIVMNKSTDIVRAIARLIEFYKHESCGQCTPCREGVDWMNK 399

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R+ +G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+  + 
Sbjct: 400 VMWRMCQGDARVDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEKRMKLFD 459

Query: 421 RCNFQ 425
               Q
Sbjct: 460 TVKRQ 464


>gi|94468934|gb|ABF18316.1| mitochondrial NADH:ubiquinone oxidoreductase NDUFV1/51 kDa subunit
           [Aedes aegypti]
          Length = 486

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/421 (65%), Positives = 328/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL KG DWIINE+K SGLRGRGGAGF 
Sbjct: 60  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWIINEIKVSGLRGRGGAGFP 119

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 120 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 179

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 180 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 239

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG  W++ FGR  N GTK
Sbjct: 240 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFASFGRTRNSGTK 299

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+RGGWDNLL +IPGGSS P +P      
Sbjct: 300 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVRGGWDNLLGIIPGGSSTPIIPKNVCDD 359

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 360 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGITWMYK 419

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G  +  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y 
Sbjct: 420 MMHRFVDGNGRPEEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKYE 479

Query: 421 R 421
           +
Sbjct: 480 Q 480


>gi|115391293|ref|XP_001213151.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
 gi|114194075|gb|EAU35775.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
          Length = 496

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LQDKDRIFTNLYGHHGADLKSAMKYGDWYRTKDIVLKGHDWLISELKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N 
Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNS 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  +GLGTAAV+VMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 347 CDDQLMDFDALKDSQTGLGTAAVVVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+RL  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP IE RI 
Sbjct: 407 TMQMMQRLETGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPEIEARIQ 466

Query: 418 QYHR 421
           +Y +
Sbjct: 467 EYSK 470


>gi|548387|sp|P25708|NDUV1_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH dehydrogenase
           flavoprotein 1; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|109939909|gb|AAI18305.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Bos taurus]
 gi|296471573|gb|DAA13688.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Bos taurus]
          Length = 464

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/416 (65%), Positives = 325/416 (78%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 450


>gi|242769552|ref|XP_002341788.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724984|gb|EED24401.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 497

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 270/422 (63%), Positives = 333/422 (78%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W    +++ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 48  LKDQDRIFTNLYGHHGTDLKSAMKYGDWHKTKEMILKGHDWLISEIKASGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 108 SGLKYSFMNFKDWDKDSRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 167

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 168 TAAYIYIRGEFYHEATTLQRAIQEAYQAGLIGKNACGTGYDFDVYLHRGAGAYVCGEETS 227

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRGASW++GFGRE N+
Sbjct: 228 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIVRRGASWFAGFGRERNQ 287

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCT+EE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 288 GTKLFCISGHVNNPCTIEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKKI 347

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 407

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R+  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 408 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 467

Query: 418 QY 419
           +Y
Sbjct: 468 KY 469


>gi|157116636|ref|XP_001658587.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) [Aedes
           aegypti]
 gi|108876370|gb|EAT40595.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) [Aedes
           aegypti]
          Length = 487

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/421 (65%), Positives = 328/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL KG DWIINE+K SGLRGRGGAGF 
Sbjct: 60  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWIINEIKVSGLRGRGGAGFP 119

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 120 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 179

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 180 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 239

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG  W++ FGR  N GTK
Sbjct: 240 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFASFGRTRNSGTK 299

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+RGGWDNLL +IPGGSS P +P      
Sbjct: 300 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVRGGWDNLLGIIPGGSSTPIIPKNVCDD 359

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 360 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGITWMYK 419

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G  +  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y 
Sbjct: 420 MMHRFVDGNGRPEEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKYE 479

Query: 421 R 421
           +
Sbjct: 480 Q 480


>gi|226528477|ref|NP_001141461.1| hypothetical protein LOC100273571 [Zea mays]
 gi|194704660|gb|ACF86414.1| unknown [Zea mays]
          Length = 504

 Score =  578 bits (1490), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 271/424 (63%), Positives = 334/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W    +++ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 55  LKDQDRIFTNLYGHHGTDLKSAMKYGDWHKTKEMILKGHDWLISEIKASGLRGRGGAGFP 114

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 115 SGLKYSFMNFKDWDKDSRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 174

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 175 TAAYIYIRGEFYHEATTLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 234

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRGASW++GFGRE N+
Sbjct: 235 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIVRRGASWFAGFGRERNQ 294

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 295 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKNI 354

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 355 CDEQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 414

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R+  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 415 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 474

Query: 418 QYHR 421
           +Y +
Sbjct: 475 KYEQ 478


>gi|163412|gb|AAA30661.1| NADH dehydrogenase [Bos taurus]
          Length = 490

 Score =  578 bits (1490), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 274/416 (65%), Positives = 325/416 (78%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 61  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 120

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 121 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 180

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 181 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 240

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 241 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 300

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 301 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 360

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 361 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 420

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+
Sbjct: 421 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 476


>gi|134110700|ref|XP_776177.1| hypothetical protein CNBD2240 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258845|gb|EAL21530.1| hypothetical protein CNBD2240 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 534

 Score =  578 bits (1489), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 269/428 (62%), Positives = 330/428 (77%), Gaps = 4/428 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNL+      +  +++RG W     I+ KG  W+I  VK SGLRGRGGAGF 
Sbjct: 75  LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWLIQTVKDSGLRGRGGAGFP 134

Query: 62  TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 135 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 194

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF +E   +Q A+DE Y +GL+G N+   GYD D+ +H GAGAYICGEETA
Sbjct: 195 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 254

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N 
Sbjct: 255 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 314

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F +SGHVN PC VEE MSI   EL+EKHCGG+RGGW NL  ++PGGSSVP +    
Sbjct: 315 GTKVFCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVVNRET 374

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK+ G+ LGT AVIVMD STD+I AI R S FYKHESCGQCTPCREGT W
Sbjct: 375 SEKCLMDYDSLKDNGTSLGTGAVIVMDNSTDMIAAIARFSKFYKHESCGQCTPCREGTSW 434

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ 
Sbjct: 435 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 494

Query: 418 QYHRCNFQ 425
           Q+H  N Q
Sbjct: 495 QFHAKNGQ 502


>gi|212542183|ref|XP_002151246.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Penicillium
           marneffei ATCC 18224]
 gi|210066153|gb|EEA20246.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Penicillium
           marneffei ATCC 18224]
          Length = 505

 Score =  578 bits (1489), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 271/424 (63%), Positives = 332/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     ++ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 56  LKDQDRIFTNLYGHHGTDLKSAMKYGDWYKTKDMILKGHDWLISEIKASGLRGRGGAGFP 115

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 116 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 175

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 176 TAAYIYIRGEFYEEATTLQRAIHEAYQAGLIGKNACGSGYDFDVYIHRGAGAYVCGEETS 235

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRG SW++GFGRE N+
Sbjct: 236 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIMRRGGSWFAGFGRERNQ 295

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 296 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKSI 355

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 356 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 415

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R+  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 416 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 475

Query: 418 QYHR 421
           QY +
Sbjct: 476 QYEK 479


>gi|209154510|gb|ACI33487.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo
           salar]
 gi|223647304|gb|ACN10410.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo
           salar]
 gi|223673187|gb|ACN12775.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo
           salar]
          Length = 474

 Score =  578 bits (1489), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/421 (65%), Positives = 333/421 (79%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  + SRG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 48  LADQDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGVDWILNEIKVSGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+IMR++PH L+EGC++A  A+GA  A
Sbjct: 108 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAA 167

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A++E YA+GL+G NS   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 168 YIYIRGEFYNESSNLQVAINEAYAAGLIGKNSCGSGYDFDVFVMRGAGAYICGEETALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+ GFGRE N GTK
Sbjct: 228 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFLGFGRERNSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG+RGGWDNLL VIPGGSS P +P      
Sbjct: 288 LFNISGHVNTPCTVEEEMSIPLKDLIERHAGGVRGGWDNLLCVIPGGSSTPLIPRSVCDT 347

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  +GLGTAA+IVMD+STD+I+AI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 348 VLMDFDGLVQAQTGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNK 407

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG A+  EID+++E+SK IEG TICALGD AAWP+QGLI++FRP++E RI ++ 
Sbjct: 408 MMWRFVKGDARAAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPIMETRIAEFQ 467

Query: 421 R 421
           +
Sbjct: 468 Q 468


>gi|58265992|ref|XP_570152.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|57226385|gb|AAW42845.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 534

 Score =  578 bits (1489), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 269/428 (62%), Positives = 330/428 (77%), Gaps = 4/428 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNL+      +  +++RG W     I+ KG  W+I  VK SGLRGRGGAGF 
Sbjct: 75  LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWLIQTVKDSGLRGRGGAGFP 134

Query: 62  TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 135 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 194

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF +E   +Q A+DE Y +GL+G N+   GYD D+ +H GAGAYICGEETA
Sbjct: 195 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 254

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N 
Sbjct: 255 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 314

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F +SGHVN PC VEE MSI   EL+EKHCGG+RGGW NL  ++PGGSSVP +    
Sbjct: 315 GTKVFCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVVNRET 374

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK+ G+ LGT AVIVMD STD+I AI R S FYKHESCGQCTPCREGT W
Sbjct: 375 SEKCLMDYDSLKDNGTSLGTGAVIVMDNSTDMIAAIARFSKFYKHESCGQCTPCREGTSW 434

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ 
Sbjct: 435 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 494

Query: 418 QYHRCNFQ 425
           Q+H  N Q
Sbjct: 495 QFHAKNGQ 502


>gi|67538918|ref|XP_663233.1| NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial precursor (Complex I-51KD) (CI-51KD)
           [Aspergillus nidulans FGSC A4]
 gi|40743532|gb|EAA62722.1| NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial precursor (Complex I-51KD) (CI-51KD)
           [Aspergillus nidulans FGSC A4]
 gi|259484902|tpe|CBF81519.1| TPA: NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 497

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 270/422 (63%), Positives = 332/422 (78%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LKDQDRIFTNLYGHHGADLKSAMKYGDWYRTKDIVLKGHDWLISELKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 167 NAAYIYIRGEFYHEATVLQQAINEAYQAGLIGKNACGTGYDFDVFIHRGMGAYVCGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW++GFGRE N 
Sbjct: 227 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFAGFGRERNA 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNL AVIPGGSS P +P   
Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLKAVIPGGSSTPIIPKSV 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  +GLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 347 CDDQLMDFDALKDSQTGLGTAAVIVMDKSTDVVRAISRLSTFYKHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++M+RL KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 407 TLQMMQRLEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466

Query: 418 QY 419
           +Y
Sbjct: 467 EY 468


>gi|119194275|ref|XP_001247741.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Coccidioides immitis RS]
          Length = 529

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L ++M  G W    +IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 79  LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEET+
Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 499 KFAQQN 504


>gi|226486986|emb|CAX75358.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma
           japonicum]
          Length = 476

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M RGHW    +I+ KG DWII E+K SGLRGRGGAGF 
Sbjct: 42  LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 101

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA  A+GA+ A
Sbjct: 102 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 161

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   G++ D+ +H GAGAYICGEETAL+E
Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 221

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 222 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 281

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG+ GGWDNLLAVIPGGSS P LP      
Sbjct: 282 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 341

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAA+IVM+RS D++  I RL  FY+HESCGQCTPCREG  WM +
Sbjct: 342 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 401

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R  ++
Sbjct: 402 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 460


>gi|226486984|emb|CAX75357.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma
           japonicum]
          Length = 476

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M RGHW    +I+ KG DWII E+K SGLRGRGGAGF 
Sbjct: 42  LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 101

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA  A+GA+ A
Sbjct: 102 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 161

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   G++ D+ +H GAGAYICGEETAL+E
Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 221

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 222 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 281

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG+ GGWDNLLAVIPGGSS P LP      
Sbjct: 282 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 341

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAA+IVM+RS D++  I RL  FY+HESCGQCTPCREG  WM +
Sbjct: 342 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 401

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R  ++
Sbjct: 402 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 460


>gi|302684473|ref|XP_003031917.1| hypothetical protein SCHCODRAFT_257275 [Schizophyllum commune H4-8]
 gi|300105610|gb|EFI97014.1| hypothetical protein SCHCODRAFT_257275 [Schizophyllum commune H4-8]
          Length = 501

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/426 (63%), Positives = 329/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN Y      L  + SRG W     I+ KG  WII  +K SGLRGRGGAGF 
Sbjct: 40  LKDQDRIFTNAYCRHDHGLKGAKSRGDWHRTKDIILKGDSWIIQTIKDSGLRGRGGAGFP 99

Query: 62  TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLVVNADE EPGTCKDR+I+R +PH LIEGC++A  A+ A
Sbjct: 100 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREILRGDPHKLIEGCLVAGRAMNA 159

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF +E   +Q A++E YA+GL+G ++   GY  D+ +H GAGAYICGEETA
Sbjct: 160 TAAYIYIRGEFFQEASHVQQAINEAYAAGLIGKDACGSGYSFDVYLHRGAGAYICGEETA 219

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N+
Sbjct: 220 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNQ 279

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PC VEE MSI   +LIEKHCGG+ GGWDNLL ++PGGSSVP LP  +
Sbjct: 280 GTKLFCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVIGGWDNLLGIVPGGSSVPILPIDK 339

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK+  SGLGT AVIVMD+STD++ AI R + FYKHESCGQCTPCREGT W
Sbjct: 340 CSEVLMDYDSLKDAQSGLGTGAVIVMDKSTDVVSAIARFASFYKHESCGQCTPCREGTTW 399

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM +M R+V+G    REID+L E+SK IEGRTICALGDAAAWPIQGL+++FRP +E+RI+
Sbjct: 400 MMNMMNRMVEGRGHVREIDMLLEISKQIEGRTICALGDAAAWPIQGLMRHFRPEVEKRIE 459

Query: 418 QYHRCN 423
           ++ R N
Sbjct: 460 EFRRAN 465


>gi|303311397|ref|XP_003065710.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105372|gb|EER23565.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 529

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L ++M  G W    +IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 79  LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEET+
Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 499 KFAQQN 504


>gi|40538780|ref|NP_777233.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Bos taurus]
 gi|162864|gb|AAA30450.1| mitochondrial NADH dehydrogenase (ubiquinone) 51kDa subunit [Bos
           taurus]
          Length = 464

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/416 (65%), Positives = 324/416 (77%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           VM R V+G A+  EID L E+SK IEG TICALGD AAWP+QGLI++FRP +EER+
Sbjct: 395 VMARFVRGDARPAEIDSLCEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 450


>gi|320039567|gb|EFW21501.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 529

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L ++M  G W    +IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 79  LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEET+
Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 499 KFAQQN 504


>gi|332373616|gb|AEE61949.1| unknown [Dendroctonus ponderosae]
          Length = 473

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 266/419 (63%), Positives = 327/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DR+FTNLYG     L  +M RG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 46  LADEDRVFTNLYGRHDWRLKGAMKRGDWYKTKEILLKGSDWIVNELKTSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM +    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  AIGA  A
Sbjct: 106 TGMKWSFMNRPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAIGAKAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEASNMQVAIAEAYQAGFLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTVNNVE+IAV P+I RRG  W++ FGR  N GTK
Sbjct: 226 SIEGKQGKPRLKPPFPADVGVFGCPTTVNNVETIAVSPSICRRGGPWFASFGRTRNSGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   EL+E H GG++GGWDNLLA+IPGGSS P +P      
Sbjct: 286 LFNISGHVNRPCTVEEEMSIPLKELVEIHAGGVQGGWDNLLAIIPGGSSTPLIPKSVCED 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL    + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG  WM +
Sbjct: 346 VLMDFDGLVAAQTSLGTAALIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGVNWMNK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++ R V G A+  EID+L+E+SK IEGR+ICAL D AAWP+QGLI++FRP +E+R+ ++
Sbjct: 406 MIYRFVDGNAKPEEIDMLWEISKQIEGRSICALADGAAWPVQGLIRHFRPELEDRMRKF 464


>gi|56753822|gb|AAW25108.1| SJCHGC01665 protein [Schistosoma japonicum]
 gi|226486990|emb|CAX75360.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma
           japonicum]
          Length = 475

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M RGHW    +I+ KG DWII E+K SGLRGRGGAGF 
Sbjct: 41  LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 100

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA  A+GA+ A
Sbjct: 101 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 160

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   G++ D+ +H GAGAYICGEETAL+E
Sbjct: 161 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 220

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 221 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 280

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG+ GGWDNLLAVIPGGSS P LP      
Sbjct: 281 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 340

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAA+IVM+RS D++  I RL  FY+HESCGQCTPCREG  WM +
Sbjct: 341 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 400

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R  ++
Sbjct: 401 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 459


>gi|323453876|gb|EGB09747.1| hypothetical protein AURANDRAFT_24188 [Aureococcus anophagefferens]
          Length = 469

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/425 (63%), Positives = 332/425 (78%), Gaps = 1/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + DQDRIFTNLYG +   L D+  RG W     I+  G DWI+ E+K SGLRGRGGAGF 
Sbjct: 1   VKDQDRIFTNLYGEEDWRLGDAKKRGDWHMTKDIMWMGPDWIVQEMKDSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP +LV+NADESEPGTCKDR+IMR +PH L+EGC++A +A+ A   
Sbjct: 61  SGLKWSFMPKASDGRPSFLVINADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARAC 120

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+  E   +  A+ E Y +GL+G N+   GYD D+ +H GAGAY+CGEETAL+E
Sbjct: 121 YIYIRGEYFNEAMVMDEAIHEAYTAGLIGKNACGSGYDFDMYLHRGAGAYVCGEETALIE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVG++GCPTTV NVE+IAV PTILRRGASW++GFGR+NN GTK
Sbjct: 181 SLEGKQGKPRLKPPFPANVGVFGCPTTVTNVETIAVAPTILRRGASWFTGFGRKNNAGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN P  VEE MSI F ELI+KHCGG+RGGW+ L AVIPGGSSVP LP  +   
Sbjct: 241 LFAISGHVNNPIVVEEEMSIPFRELIDKHCGGVRGGWNKLQAVIPGGSSVPVLPIEECEE 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D LK  GSGLGTAAV VMD + D+I AI RL+ FY+HESCGQCTPCREGTGW+  
Sbjct: 301 ALMDFDDLKARGSGLGTAAVTVMDDTVDMIAAIRRLAHFYRHESCGQCTPCREGTGWLET 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+  G A  REI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+P+IEERI    
Sbjct: 361 ILERMEVGDADVREIGMLDEISRQIEGHTICALGDAAAWPVQGLIRRFQPVIEERIADPQ 420

Query: 421 RCNFQ 425
             +F+
Sbjct: 421 GFDFE 425


>gi|148222918|ref|NP_001080215.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Xenopus
           laevis]
 gi|27370996|gb|AAH41320.1| Ndufv1 protein [Xenopus laevis]
 gi|77748340|gb|AAI06321.1| Ndufv1 protein [Xenopus laevis]
          Length = 471

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/425 (64%), Positives = 330/425 (77%), Gaps = 1/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  ++SRG W    +IL KG DWI  EVK SGLRGRGGAGF 
Sbjct: 41  LSDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWIQGEVKTSGLRGRGGAGFP 100

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  ++GA  A
Sbjct: 101 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 160

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ AV E Y++GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 161 YIYIRGEFYNEASNLQVAVREAYSAGLIGRNACGSGYDFDVFVVRGAGAYICGEETALIE 220

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK
Sbjct: 221 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNSGTK 280

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 281 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAVIPGGSSTPLIPRSVCET 340

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAA+IVM++STDI++AI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 341 VLMDFDALVQAQTGLGTAAIIVMNKSTDIVRAIARLIEFYKHESCGQCTPCREGVDWMNK 400

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R+ +G A   EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+  + 
Sbjct: 401 VMWRMCRGDAHVDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEQRMKLFD 460

Query: 421 RCNFQ 425
               Q
Sbjct: 461 TAKRQ 465


>gi|268532110|ref|XP_002631183.1| C. briggsae CBR-NUO-1 protein [Caenorhabditis briggsae]
 gi|187036977|emb|CAP23643.1| CBR-NUO-1 protein [Caenorhabditis briggsae AF16]
          Length = 479

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/421 (63%), Positives = 325/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  + +RG W    +I+ KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 46  LKDSDRIFTNLYGRHDYRLKGAQARGDWYKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I   A+GA  A
Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A++E Y +G LG +    GY+ D+ VH GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISG VN PCTVEE MS+   +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P      
Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKSVCDT 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG  W+ +
Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H
Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465

Query: 421 R 421
           +
Sbjct: 466 K 466


>gi|325089901|gb|EGC43211.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 512

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 273/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W     I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 62  LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWIISEIKASGLRGRGGAGFP 121

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 122 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 181

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 182 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 241

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 242 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 301

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 302 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHI 361

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 362 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 421

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 422 TMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 481

Query: 418 QYHR 421
           +Y +
Sbjct: 482 KYEQ 485


>gi|225559879|gb|EEH08161.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
 gi|225559929|gb|EEH08211.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 512

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 273/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W     I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 62  LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWIISEIKASGLRGRGGAGFP 121

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 122 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 181

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 182 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 241

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 242 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 301

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 302 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHI 361

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 362 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 421

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 422 TMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 481

Query: 418 QYHR 421
           +Y +
Sbjct: 482 KYEQ 485


>gi|55741424|ref|NP_001006973.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Rattus norvegicus]
 gi|54035438|gb|AAH83709.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Rattus norvegicus]
 gi|149061920|gb|EDM12343.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_a
           [Rattus norvegicus]
          Length = 464

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 271/419 (64%), Positives = 326/419 (77%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQRRGDWYKTKEILLKGPDWILGEMKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+    YD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSDYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVLGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVM+ STDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMNSSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++
Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRF 453


>gi|71896123|ref|NP_001026754.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Gallus
           gallus]
 gi|53136784|emb|CAG32721.1| hypothetical protein RCJMB04_33n14 [Gallus gallus]
          Length = 459

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 277/419 (66%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +IL KG DWI+ E+KASGLRGRGGAGF 
Sbjct: 31  LKDEDRIFTNLYGRHEWRLQGALRRGDWYKTKEILLKGVDWILGEIKASGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+GA  A
Sbjct: 91  TGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 150

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GLLG N+    Y  D+ V  GAGAYICGEETAL+E
Sbjct: 151 YIYIRGEFYNEASNLQVAIREAYEAGLLGKNACGSDYAFDVFVVRGAGAYICGEETALIE 210

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 211 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGAWFAGFGRERNSGTK 270

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+RGGWDNLLAVIPGGSS P LP      
Sbjct: 271 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPKSVCET 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAAVIVMD+STDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 331 VLMDFDSLVQAQSGLGTAAVIVMDKSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++
Sbjct: 391 VMARFVRGDAQAAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMRRF 449


>gi|73667105|ref|YP_303121.1| NADH dehydrogenase I subunit F [Ehrlichia canis str. Jake]
 gi|72394246|gb|AAZ68523.1| NADH dehydrogenase subunit F [Ehrlichia canis str. Jake]
          Length = 427

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 275/422 (65%), Positives = 326/422 (77%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DR+FTNLYG Q   L  + SRG W N+ +IL  G D II EVK SGLRGRGGAGF
Sbjct: 1   MLKDSDRVFTNLYGQQSPFLKSAKSRGVWSNILEILNLGPDHIIQEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK   D +P YLVVNADESEPGTCKDRDI+R++PH LIEG +IA FA+   
Sbjct: 61  STGLKWSFMPKTRKDGQPAYLVVNADESEPGTCKDRDILRYDPHRLIEGILIAGFAMNVT 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A++Y+RGEF  E   L  A+DE Y + L+G N+   GYD+DI +H GAGAYICGEETA 
Sbjct: 121 TAYVYIRGEFYNEYLVLSKALDEAYKAKLIGKNACGSGYDLDIFIHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA V  I+RRG+ W++  G+ENN G
Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATVSEIMRRGSDWFASLGKENNTG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP    
Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMKELIEKYAGGVRGGWDNLLAVIPGGSSVPMLPKSIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L+ + SGLGTA +IVMD+STD+I AI RLS FY HESCGQCTPCREGTGWM
Sbjct: 301 DTVTMDFDSLRAVQSGLGTAGLIVMDKSTDLIAAIERLSHFYMHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R+M+++VKG A    IDLL  ++  +EG TICALGDAAAWPIQGLI++FR +IE+RI  
Sbjct: 361 WRIMQKMVKGDATSESIDLLLNITHQVEGHTICALGDAAAWPIQGLIRHFRDVIEDRIKN 420

Query: 419 YH 420
           Y+
Sbjct: 421 YN 422


>gi|2499312|sp|Q92406|NDUV1_ASPNG RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; Flags: Precursor
 gi|1556376|emb|CAA45744.1| 51kDa subunit of NADH:ubiquinone reductase (complex I) [Aspergillus
           niger]
          Length = 496

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 270/424 (63%), Positives = 334/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 46  LKDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGHDWLISELKASGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A++Y+RGEF +E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 166 NAAYMYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 225

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N 
Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI+  ++I++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 286 GTKLFCISGHVNNPCTVEEEMSISLRDVIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKTI 345

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 346 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M +M+R+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 406 TMHMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465

Query: 418 QYHR 421
           +Y +
Sbjct: 466 EYSK 469


>gi|296808193|ref|XP_002844435.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Arthroderma otae CBS
           113480]
 gi|238843918|gb|EEQ33580.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Arthroderma otae CBS
           113480]
          Length = 534

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 273/421 (64%), Positives = 329/421 (78%), Gaps = 4/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DWII+EVK SGLRGRGGAGF 
Sbjct: 84  LKDQDRIFQNLYGRHPPDLKHAMKSGDWYKTKEIILKGHDWIISEVKTSGLRGRGGAGFP 143

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC+I+  A+ A
Sbjct: 144 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 203

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 204 TAAYIYIRGEFYEEATVLQQAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 263

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++GFGRE N+
Sbjct: 264 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 323

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 324 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 383

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 384 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 443

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 444 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 503

Query: 418 Q 418
           Q
Sbjct: 504 Q 504


>gi|301771850|ref|XP_002921334.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 461

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/419 (65%), Positives = 325/419 (77%), Gaps = 5/419 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 36  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 95

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 96  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 155

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 156 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVVRGAGAYICGEETALIE 215

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 216 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 275

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG    WDNLLAVIPGGSS P +P      
Sbjct: 276 LFNISGHVNHPCTVEEEMSVPLRELIEKHAGG----WDNLLAVIPGGSSTPLIPKSVCET 331

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 332 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 391

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 392 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 450


>gi|258567288|ref|XP_002584388.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Uncinocarpus reesii
           1704]
 gi|237905834|gb|EEP80235.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Uncinocarpus reesii
           1704]
          Length = 532

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 270/422 (63%), Positives = 331/422 (78%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIF NLYG  G  L ++M  G W    +IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 82  LKDRDRIFQNLYGRHGPDLKNAMKTGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 141

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 142 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 201

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEET+
Sbjct: 202 TAAYIYIRGEFYEEATVLQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 261

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 262 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 321

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 322 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 381

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 382 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 441

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG +ICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 442 TMQIMQRFERGQAREREIDMLQELTKQVEGHSICALGEAFAWPIQGLIRHFRPELEARIQ 501

Query: 418 QY 419
           ++
Sbjct: 502 KF 503


>gi|73982783|ref|XP_851761.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 2 [Canis familiaris]
          Length = 460

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 273/419 (65%), Positives = 325/419 (77%), Gaps = 5/419 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG    WDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGG----WDNLLAVIPGGSSTPLIPKSVCET 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 331 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 391 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 449


>gi|315042968|ref|XP_003170860.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
 gi|311344649|gb|EFR03852.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
          Length = 535

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/426 (64%), Positives = 330/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DWIINEVK SGLRGRGGAGF 
Sbjct: 85  LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIINEVKTSGLRGRGGAGFP 144

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC+I+  A+ A
Sbjct: 145 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 204

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 205 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 264

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV P I RRG  W++GFGRE N+
Sbjct: 265 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPAICRRGGKWFAGFGRERNQ 324

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 325 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHV 384

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 385 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 444

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 445 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 504

Query: 418 QYHRCN 423
           Q  + N
Sbjct: 505 QNAQAN 510


>gi|261199832|ref|XP_002626317.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis SLH14081]
 gi|239594525|gb|EEQ77106.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis SLH14081]
 gi|239607916|gb|EEQ84903.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis ER-3]
 gi|327357999|gb|EGE86856.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis ATCC 18188]
          Length = 518

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W    +I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 68  LKDQDRIFQNLYGNHGADLKTAMKFGDWYKTKEIMLKGHDWIISEIKASGLRGRGGAGFP 127

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 128 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 187

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E  S+Q A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 188 TAAYIYIRGEFYNEATSVQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 247

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 248 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGKWFASFGRERNQ 307

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 308 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 367

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 368 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 427

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R   G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 428 TYQMMKRFESGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 487

Query: 418 QYHR 421
           +Y +
Sbjct: 488 KYEQ 491


>gi|302658280|ref|XP_003020846.1| hypothetical protein TRV_05072 [Trichophyton verrucosum HKI 0517]
 gi|291184712|gb|EFE40228.1| hypothetical protein TRV_05072 [Trichophyton verrucosum HKI 0517]
          Length = 595

 Score =  575 bits (1481), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/426 (63%), Positives = 331/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DWII+E+K SGLRGRGGAGF 
Sbjct: 145 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIISEIKTSGLRGRGGAGFP 204

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++  A+ A
Sbjct: 205 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 265 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++GFGRE N+
Sbjct: 325 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 385 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 444

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 445 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 504

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 505 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEGRIR 564

Query: 418 QYHRCN 423
           Q  + N
Sbjct: 565 QNAQAN 570


>gi|190895760|gb|ACE96393.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895774|gb|ACE96400.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 396

 Score =  575 bits (1481), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/396 (68%), Positives = 317/396 (80%), Gaps = 1/396 (0%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           N+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP
Sbjct: 1   NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K+   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A+IY+RGE++
Sbjct: 61  KISDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
            ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLESLEGK+G+P
Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTKLF +SGHVN
Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP       +MDYD LK
Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  +MERL  G 
Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396


>gi|46134221|ref|XP_389426.1| NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial precursor (Complex I-51KD) (CI-51KD)
           [Gibberella zeae PH-1]
          Length = 486

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/426 (63%), Positives = 334/426 (78%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY      L  +   G W    +I+ KG DWII+EVKASGLRGRGGAGF 
Sbjct: 37  LRDQDRIFQNLYNRYPVDLKSARKMGDWHKTKEIILKGHDWIISEVKASGLRGRGGAGFP 96

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLV+NADE EPGTCKDR+IMR +PH LIEGC+I+  A+ A
Sbjct: 97  SGLKWSFMNFKDWDKDNKPRYLVINADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 156

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E   LQ A++E YA+GL+G N+ + GYD D+ +H GAGAY+CGEET+
Sbjct: 157 TAAYIYIRGEFVEEAAVLQRAINEAYAAGLIGKNACESGYDFDVYLHRGAGAYVCGEETS 216

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+
Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGSWFAGFGRERNQ 276

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 277 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPVLPKSV 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSHFYRHESCGQCTPCREGSKW 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 397 TEQMMKRFEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 457 KFAQEN 462


>gi|302498901|ref|XP_003011447.1| hypothetical protein ARB_02297 [Arthroderma benhamiae CBS 112371]
 gi|291174998|gb|EFE30807.1| hypothetical protein ARB_02297 [Arthroderma benhamiae CBS 112371]
          Length = 535

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/426 (63%), Positives = 331/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DWII+E+K SGLRGRGGAGF 
Sbjct: 85  LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIISEIKTSGLRGRGGAGFP 144

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++  A+ A
Sbjct: 145 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 204

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 205 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 264

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++GFGRE N+
Sbjct: 265 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 324

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 325 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 384

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 385 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 444

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 445 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 504

Query: 418 QYHRCN 423
           Q  + N
Sbjct: 505 QNAQAN 510


>gi|225713920|gb|ACO12806.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 463

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/421 (65%), Positives = 325/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +MSRG W    +I+ KG DWIINEVK SGLRGRGGAGF 
Sbjct: 34  LKDSDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIVLKGADWIINEVKVSGLRGRGGAGFP 93

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 94  SGMKWSFMQKPDDGRPKYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 153

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVRGEF  E  +LQ A+ E Y  G LG NS   GYD D+ VH GAGAYICGEETAL+E
Sbjct: 154 YIYVRGEFYNETTNLQVAIKEAYTKGFLGKNSCGTGYDFDVFVHRGAGAYICGEETALIE 213

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+S FGR  N GTK
Sbjct: 214 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGTWFSSFGRPRNTGTK 273

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF++SGHVN PCTVEE MS+   ELIE+H GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 274 LFNVSGHVNNPCTVEEEMSVPLKELIERHAGGVIGGWDNLLAVIPGGSSTPLIPKHVCND 333

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAAVIVM++  D++KAI RL+ FYKHESCGQCTPCREG  WM  
Sbjct: 334 VMMDFDALIAAQTGLGTAAVIVMNKQCDVVKAIARLATFYKHESCGQCTPCREGCNWMDT 393

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V+G AQ  EID+L+E++K IEG TICAL D AAWP+QGLI++FRP +E R ++YH
Sbjct: 394 MMWRFVEGNAQAGEIDMLWELTKQIEGHTICALADGAAWPVQGLIRHFRPELEARFEEYH 453

Query: 421 R 421
           R
Sbjct: 454 R 454


>gi|321258005|ref|XP_003193778.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Cryptococcus gattii
           WM276]
 gi|317460248|gb|ADV21991.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative
           [Cryptococcus gattii WM276]
          Length = 495

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 266/423 (62%), Positives = 328/423 (77%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNL+      +  +++RG W     I+ KG  WII  VK SGLRGRGGAGF 
Sbjct: 36  LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWIIQTVKDSGLRGRGGAGFP 95

Query: 62  TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 96  SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 155

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF +E   +Q A+DE Y +GL+G N+   GYD D+ +H GAGAYICGEETA
Sbjct: 156 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 215

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N 
Sbjct: 216 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 275

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK++ +SGHVN PC VEE MSI   EL+EKHCGG+RGGW NL  ++PGGSSVP +    
Sbjct: 276 GTKVYCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVITRET 335

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK+ G+ LGT AVIVMD +TD+I AI R S FYKHESCGQCTPCREGT W
Sbjct: 336 SEKCLMDYDSLKDNGTSLGTGAVIVMDNTTDMIAAIARFSKFYKHESCGQCTPCREGTSW 395

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ 
Sbjct: 396 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 455

Query: 418 QYH 420
           Q+H
Sbjct: 456 QFH 458


>gi|190895764|gb|ACE96395.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895766|gb|ACE96396.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895768|gb|ACE96397.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895770|gb|ACE96398.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 396

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/396 (68%), Positives = 316/396 (79%), Gaps = 1/396 (0%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           N+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP
Sbjct: 1   NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A+IY+RGE++
Sbjct: 61  KTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
            ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLESLEGK+G+P
Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTKLF +SGHVN
Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP       +MDYD LK
Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  +MERL  G 
Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396


>gi|171682190|ref|XP_001906038.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941054|emb|CAP66704.1| unnamed protein product [Podospora anserina S mat+]
          Length = 497

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/426 (63%), Positives = 330/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +IL KG DWII E+KASGLRGRGGAGF 
Sbjct: 48  LRDQDRIFQNLYGRFPPDLKSAKKMGDWHKTKEILLKGHDWIIGEIKASGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 108 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 167

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI E   LQ A++E YA GL+G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 168 SAAYIYIRGEFIHEAAVLQNAINEAYADGLIGKNACGSGYDFDVYVHRGGGAYVCGEETS 227

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+
Sbjct: 228 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 287

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 288 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHV 347

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 407

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 408 TEQIMQRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 467

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 468 KFAQEN 473


>gi|190895762|gb|ACE96394.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895772|gb|ACE96399.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 396

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/396 (68%), Positives = 316/396 (79%), Gaps = 1/396 (0%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           N+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP
Sbjct: 1   NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A+IY+RGE++
Sbjct: 61  KASDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
            ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLESLEGK+G+P
Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTKLF +SGHVN
Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP       +MDYD LK
Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  +MERL  G 
Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396


>gi|85086245|ref|XP_957659.1| NADH-quinone oxidoreductase chain F 1 [Neurospora crassa OR74A]
 gi|67477366|sp|P24917|NDUV1_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; Flags: Precursor
 gi|28918753|gb|EAA28423.1| NADH-quinone oxidoreductase chain F 1 [Neurospora crassa OR74A]
 gi|39979235|emb|CAE85605.1| NADH2 dehydrogenase (ubiquinone) flavoprotein 1 precursor
           [Neurospora crassa]
          Length = 493

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/426 (63%), Positives = 332/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +IL KG DWII EVKASGLRGRGGAGF 
Sbjct: 44  LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM        D+P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 104 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 163

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI+E   LQ A++E YA GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 164 TAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 223

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+
Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGRERNQ 283

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 284 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 344 CDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 463

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 464 KFAQEN 469


>gi|310800932|gb|EFQ35825.1| NADH oxidoreductase [Glomerella graminicola M1.001]
          Length = 477

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 268/422 (63%), Positives = 330/422 (78%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG    +L+ +   G W    +I+ KG DWII+EVKASGLRGRGGAGF 
Sbjct: 27  LKDQDRIFQNLYGRMPPTLASAKKMGDWHKTKEIILKGHDWIISEVKASGLRGRGGAGFP 86

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM        D+P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 87  SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 146

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E   LQ A++E Y  GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 147 SAAYIYIRGEFVHEAAVLQNAINEAYKDGLIGKNACNSGYDFDVFIHRGAGAYVCGEETS 206

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+
Sbjct: 207 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGRERNQ 266

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN P TVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 267 GTKLFCISGHVNNPVTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKNV 326

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREG+ W
Sbjct: 327 CDNQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYAHESCGQCTPCREGSKW 386

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  + REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E+R++
Sbjct: 387 TDQIMKRFEKGQGRPREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEKRME 446

Query: 418 QY 419
           +Y
Sbjct: 447 EY 448


>gi|320589001|gb|EFX01469.1| NADH-ubiquinone oxidoreductase mitochondrial precursor [Grosmannia
           clavigera kw1407]
          Length = 525

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 267/422 (63%), Positives = 330/422 (78%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY      L  +   G W    +IL KG +WII+EVKASGLRGRGGAGF 
Sbjct: 76  LKDQDRIFQNLYSRYPPDLKHARKMGDWHKTKEILLKGHEWIISEVKASGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA  A+ A
Sbjct: 136 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 195

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E E LQAA++E YA GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 196 TAAYIYIRGEFVYEAEVLQAAINEAYAEGLIGKNACGSGYDFDVFIHRGAGAYVCGEETS 255

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VG++GCP+TV NVE++AV PTI RRG +W++GFGRE N+
Sbjct: 256 LIESIEGKPGKPRLKPPFPAAVGVFGCPSTVTNVETVAVAPTICRRGGAWFAGFGRERNQ 315

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWD LLAVIPGGSS P LP   
Sbjct: 316 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDKLLAVIPGGSSTPILPKSM 375

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 376 CEDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 435

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R  KG+ ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 436 TEQIMSRFEKGMGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 495

Query: 418 QY 419
           ++
Sbjct: 496 KF 497


>gi|295669264|ref|XP_002795180.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
 gi|226285114|gb|EEH40680.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
          Length = 515

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/424 (63%), Positives = 328/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W    +I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 65  LKDQDRIFQNLYGHHGADLKTAMKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA  A+ A
Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 244

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI 
Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484

Query: 418 QYHR 421
           +Y +
Sbjct: 485 KYEQ 488


>gi|48097536|ref|XP_391916.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial [Apis mellifera]
          Length = 469

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 268/421 (63%), Positives = 323/421 (76%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +I+EKG DWIINE+K SGLRGRGGAGF 
Sbjct: 45  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVEKGADWIINEIKVSGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVN DE EPGTCKDR+I+RH+PH L+EGC+IA  A+GA  A
Sbjct: 105 SGMKWSFMNKPSDGRPKYLVVNGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD DI V  GAGAYICGEETAL+E
Sbjct: 165 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACGSGYDFDIFVQRGAGAYICGEETALIE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 225 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 285 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 344

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            ++D+D L  + +  GTAAVIVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 345 VLLDFDDLVRVQTSFGTAAVIVMNKQTDIIKAIARLISFYKHESCGQCTPCREGISWMYK 404

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V+G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE RI Q+ 
Sbjct: 405 IMRRFVQGQAEVHEIDMLWELTKQIEMHTICALADGAAWPVQGLIRHFRPEIEARIAQHK 464

Query: 421 R 421
           +
Sbjct: 465 Q 465


>gi|164662034|ref|XP_001732139.1| hypothetical protein MGL_0732 [Malassezia globosa CBS 7966]
 gi|159106041|gb|EDP44925.1| hypothetical protein MGL_0732 [Malassezia globosa CBS 7966]
          Length = 509

 Score =  572 bits (1473), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 262/422 (62%), Positives = 331/422 (78%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +++RG W     I+E+G ++IIN++KASG+RGRGGAGF 
Sbjct: 43  LRDQDRIFQNLYGQHDFRLKGALARGDWHRTRDIIERGHEFIINQMKASGIRGRGGAGFP 102

Query: 62  TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +GMKWSFM K       RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A  A+GA
Sbjct: 103 SGMKWSFMLKPGWEKDPRPRYLVINADEGEPGTCKDREIMRHDPHKLIEGCLVAGRAMGA 162

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E  +LQ A++E Y +GL+G N+   GYD D+ VH GAGAYICGEETA
Sbjct: 163 NAAYIYIRGEFFLEAYNLQVAINEAYKAGLIGKNACGSGYDFDVYVHRGAGAYICGEETA 222

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PR+KPPFPA+ G++GCPTTV NVE+++V PTI+RRG  W++ FGRE N 
Sbjct: 223 LIESLEGKQGKPRMKPPFPADTGVFGCPTTVANVETVSVAPTIIRRGPEWFASFGRERNH 282

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL++ISGHVN PC VEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 283 GTKLYAISGHVNRPCVVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSTPMIPKEV 342

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D L++  S LGT AVIVMD+STD++KAI RL+ FY HESCGQCTPCREGT W
Sbjct: 343 CERTLMDFDSLRDNQSALGTGAVIVMDKSTDLVKAIARLTKFYHHESCGQCTPCREGTAW 402

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +M R   G A  REID+++E+++ +EG TIC L DA+AWPIQGL+++FRP++EERI 
Sbjct: 403 LDSMMTRFENGRASLREIDMIWEITRQMEGHTICGLADASAWPIQGLLRHFRPVVEERIK 462

Query: 418 QY 419
           +Y
Sbjct: 463 EY 464


>gi|322698851|gb|EFY90618.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Metarhizium acridum
           CQMa 102]
          Length = 486

 Score =  571 bits (1472), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 268/426 (62%), Positives = 331/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG    +L  +   G W    +I+ KG DWIINE+KASGLRGRGGAGF 
Sbjct: 37  LKDQDRIFQNLYGRLPPNLKSAKKMGDWHKTKEIILKGHDWIINEIKASGLRGRGGAGFP 96

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 97  SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 156

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E   LQ A++E Y  GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 157 TAAYIYIRGEFVYEAAVLQNAINEAYKDGLIGKNACGSGYDFDVFIHRGAGAYVCGEETS 216

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+
Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 276

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 277 GTKLYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKNI 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R  +G  ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 397 TEQIMSRFERGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 457 KFAQEN 462


>gi|83025076|ref|NP_001032653.1| hypothetical protein LOC641566 [Danio rerio]
 gi|82414771|gb|AAI10121.1| Zgc:123290 [Danio rerio]
          Length = 479

 Score =  571 bits (1472), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 270/419 (64%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  + +RG W    ++L KG +WI+NE+K SGLRGRGGAGF 
Sbjct: 48  LSDEDRIFTNLYGRHDWRLKGAEARGDWYKTKEVLLKGHEWILNEMKKSGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 108 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 167

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +G LG N+   GYD D+ VH GAGAYICGE+TAL+E
Sbjct: 168 YIYIRGEFYNEGTNLQVAIHEAYKAGYLGKNACNSGYDFDVFVHRGAGAYICGEKTALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV PTI+RRG  W++  GR  N GTK
Sbjct: 228 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTIVRRGGEWFASLGRPRNSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   EL+EKH GG+ GGWDNLLA+ PGGSSVP LP      
Sbjct: 288 LFNISGHVNNPCTVEEEMSIPLKELVEKHAGGVLGGWDNLLAITPGGSSVPMLPKNLCEE 347

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVM++ TD++KAI RLS FYKHESCGQCTPCREGTGW+ +
Sbjct: 348 VLMDFDSLLAAQSGLGTAAVIVMNKQTDVVKAIARLSEFYKHESCGQCTPCREGTGWLTK 407

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R V G A+  EID+++E++K IEG TICALGDAAAWP+QGLI++FRP +E R+ +Y
Sbjct: 408 MMYRFVDGNARPEEIDMIWELTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMQEY 466


>gi|331226611|ref|XP_003325975.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309304965|gb|EFP81556.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 511

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/426 (63%), Positives = 329/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N Y      L  + +RG W     I+ KG ++II E+K SGLRGRGGAGF 
Sbjct: 49  LKDQDRIFQNAYMKHDHLLQGAQARGDWHKTKDIILKGHEFIIKEIKESGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K   +   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 109 SGLKWSFMNKPGFEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 168

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI E   LQAA+DE Y +GL+G N+   GYD D+ +H GAGAYICGEETA
Sbjct: 169 SAAYIYIRGEFIMEAHHLQAAIDEAYKAGLIGKNACNSGYDFDVYLHRGAGAYICGEETA 228

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI+RRGASW++ FGRE N 
Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIIRRGASWFNSFGRERNS 288

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PC VEE MSI   +LI+KHCGG+ GGWDNLL ++PGGSSVP L   +
Sbjct: 289 GTKLFCISGHVNNPCVVEEEMSIPLRDLIDKHCGGVIGGWDNLLGIVPGGSSVPVLTKPE 348

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
              A+MD+D LK++ SGLGT AVIVM++STDI+ AI R + FYKHESCGQCTPCREGT W
Sbjct: 349 CEEALMDFDSLKDLYSGLGTGAVIVMNKSTDIVAAIARFAKFYKHESCGQCTPCREGTTW 408

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M ++M+R V G A +REID+L+E+++ IE  TICALGDAAAWPIQGL++ F+P IE RI 
Sbjct: 409 MEKMMDRFVVGRAHEREIDMLWELTRQIENHTICALGDAAAWPIQGLLRKFKPEIEARIQ 468

Query: 418 QYHRCN 423
            +   N
Sbjct: 469 DFRAKN 474


>gi|307195432|gb|EFN77318.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           [Harpegnathos saltator]
          Length = 470

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/424 (62%), Positives = 325/424 (76%), Gaps = 1/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+DQDRIFTNLYG     L  ++SRG W    +IL+KG DWIINE+K SGLRGRGGAGF 
Sbjct: 46  LSDQDRIFTNLYGRHDWRLKGAISRGDWHKTKEILDKGADWIINEIKVSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLV+NADE EPGTCKDR+I+RH+PH L+EGC+IA  A+GA  A
Sbjct: 106 SGMKWSFMNKPSDGRPKYLVINADEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GY+ DI V  GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACNSGYNFDIFVQRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RR  +W++ FGR  N GTK
Sbjct: 226 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRSGAWFASFGRPRNHGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNL+ VIPGGSS P +P      
Sbjct: 286 LFNISGHVNKPCTVEEEMSIPLKELIERHAGGVIGGWDNLMGVIPGGSSTPVIPKSVCDT 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            ++D+D L  + S  GTAAVIVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 346 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMYK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R V+G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE R+ Q  
Sbjct: 406 ILKRFVEGNAEMHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMKQQK 465

Query: 421 RCNF 424
              F
Sbjct: 466 EVAF 469


>gi|71004398|ref|XP_756865.1| hypothetical protein UM00718.1 [Ustilago maydis 521]
 gi|46095874|gb|EAK81107.1| hypothetical protein UM00718.1 [Ustilago maydis 521]
          Length = 846

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/426 (62%), Positives = 326/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N Y      L  + +RG W     IL KG DWII+++K SG+RGRGGAGF 
Sbjct: 387 LRDQDRIFQNAYMRHDHGLKGAKARGDWHRTKDILLKGHDWIISQMKESGMRGRGGAGFP 446

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 447 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREIMRGDPHKLIEGCLVAGRAMNA 506

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IYVRGEF  E   LQ A+ E YA GL+G N+   GYD D+ VH GAGAYICGEETA
Sbjct: 507 NAAYIYVRGEFYLEVAHLQHAIKEAYADGLIGKNACGSGYDFDVYVHKGAGAYICGEETA 566

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++A  PTI+RRG SW++GFGR+ N+
Sbjct: 567 LIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAAAPTIIRRGPSWFAGFGRDKNQ 626

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF+ISGHVN PC VEE MSI   ELIE+HCGG+RGGWDNLL ++PGGSSVP LP  +
Sbjct: 627 GTKLFAISGHVNNPCVVEEEMSIPLQELIERHCGGVRGGWDNLLGIVPGGSSVPILPKHK 686

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D L+E  S LGT AVIVMD++TD+++AI R + FYKHESCGQCTPCREGT W
Sbjct: 687 CEQVLMDFDSLRENQSSLGTGAVIVMDKTTDVVQAISRFAKFYKHESCGQCTPCREGTTW 746

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +MER  +G    REID++YE++K +EG TICAL DAAAWPIQGL++ FRP IEER+ 
Sbjct: 747 LANMMERFEEGRGNNREIDMIYELTKQMEGHTICALADAAAWPIQGLLRWFRPEIEERMR 806

Query: 418 QYHRCN 423
            Y   N
Sbjct: 807 LYQEKN 812


>gi|73982787|ref|XP_533212.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 1 [Canis familiaris]
          Length = 464

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/419 (64%), Positives = 323/419 (77%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRL P   ++ G++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLNPSSHSSTGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|170578164|ref|XP_001894295.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Brugia malayi]
 gi|158599191|gb|EDP36876.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor, putative [Brugia malayi]
          Length = 481

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/423 (63%), Positives = 321/423 (75%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M  G W    ++L KG+DWII E+ ASG+RGRGGAGF 
Sbjct: 46  LKDEDRIFTNLYGRYDFRLKSAMKLGDWYKTKEVLLKGQDWIIKEMSASGMRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM +    RP YL +NADE EPGTCKDR+++RH PH LIEG +IA +A+GA  A
Sbjct: 106 TGIKWSFMKRPFDGRPKYLCINADEGEPGTCKDREVIRHHPHKLIEGALIAGYAMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A+ E Y +G +G NS   GY  D+ VH GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEACILQEAIHEAYKAGFIGKNSCDTGYSFDVFVHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTVNN+E+IA  P I +RGA WYS FGRE N GTK
Sbjct: 226 SIEGKQGKPRLKPPFPADIGLFGCPTTVNNIETIASAPAICKRGAKWYSSFGRERNHGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHV  PCTVEE MSI   ELIE+HCGG+ GGWDNL+A+IPGGSSVP +P      
Sbjct: 286 LYCISGHVVNPCTVEEEMSIPLKELIERHCGGVIGGWDNLMAIIPGGSSVPMIPKDICET 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD L  + +GLGTAAVIVM++  DI+K I RLS FY+HESCGQCTPCREGT W+  
Sbjct: 346 VLMDYDALVAVQTGLGTAAVIVMNKEVDIVKCIARLSHFYRHESCGQCTPCREGTKWLNS 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R VKG A+  EID L+E+SK IE  TICALGDAAAWP+QGLI++FRP IE RI +Y 
Sbjct: 406 VMWRFVKGQAKSSEIDSLWEISKQIEAHTICALGDAAAWPVQGLIRHFRPEIEHRISEYQ 465

Query: 421 RCN 423
             N
Sbjct: 466 AKN 468


>gi|260827659|ref|XP_002608782.1| hypothetical protein BRAFLDRAFT_273832 [Branchiostoma floridae]
 gi|229294134|gb|EEN64792.1| hypothetical protein BRAFLDRAFT_273832 [Branchiostoma floridae]
          Length = 475

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 265/421 (62%), Positives = 322/421 (76%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M+RG +    +I+ KG DWI+ E+  SGLRGRGGAGF 
Sbjct: 47  LSDEDRIFTNLYGRHDWKLKGAMARGDYYKTKEIILKGHDWILKEIVKSGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+GA  A
Sbjct: 107 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGVAMGARAA 166

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +L  A+ E Y +GL+G N+   GYD DI VH GAGAYICGEET+L+E
Sbjct: 167 YIYIRGEFYNEGTNLMVAIQEAYKAGLIGKNACGSGYDFDIYVHRGAGAYICGEETSLIE 226

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PRLKPPFPA++G++GCPTTV NVE++AV PTI RRG  W+ G GR  N GTK
Sbjct: 227 SLEGKAGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTICRRGGDWFVGMGRTRNSGTK 286

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG VN PCTVEE MSI   ELIE+H GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 287 LFNISGQVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLAVIPGGSSTPLIPRSVCDD 346

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  + LGTAAVIV ++  D++K I RL  FYKHESCGQCTPCREGTGWM +
Sbjct: 347 VMMDFDALVQSQTALGTAAVIVFNKQADVVKGIARLIEFYKHESCGQCTPCREGTGWMTK 406

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V+G A+  EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R++ YH
Sbjct: 407 IMYRFVEGNARPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMEAYH 466

Query: 421 R 421
           +
Sbjct: 467 K 467


>gi|302895873|ref|XP_003046817.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727744|gb|EEU41104.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 486

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/422 (64%), Positives = 328/422 (77%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +I+ KG DWII EVKASGLRGRGGAGF 
Sbjct: 37  LRDQDRIFQNLYGRYPVDLKSAKRMGDWHKTKEIILKGHDWIIGEVKASGLRGRGGAGFP 96

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA  A+ A
Sbjct: 97  SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 156

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E   LQ A++E YA GL+G N+   GYD D+ VH GAGAY+CGEET+
Sbjct: 157 TAAYIYIRGEFVEEAAVLQRAINEAYADGLIGKNACGSGYDFDVYVHRGAGAYVCGEETS 216

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+
Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGNWFAGFGRERNQ 276

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN P TVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 277 GTKLFCISGHVNNPVTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPVLPKHV 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSHFYRHESCGQCTPCREGSKW 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R  KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 397 TEQIMSRFEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456

Query: 418 QY 419
           ++
Sbjct: 457 KF 458


>gi|242001646|ref|XP_002435466.1| NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit, putative
           [Ixodes scapularis]
 gi|215498802|gb|EEC08296.1| NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit, putative
           [Ixodes scapularis]
          Length = 477

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/420 (64%), Positives = 328/420 (78%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIF NLYG     L  +MSRG W    +I+ KG DWII+E+K SGLRGRGGAGF 
Sbjct: 48  LSDEDRIFQNLYGRHDWRLKGAMSRGDWYKTKEIVLKGADWIIDEIKKSGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTL+EGC++A  A+GA  A
Sbjct: 108 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLVAGRAMGARAA 167

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +G LG N+   GYD D+ VH GAGAYICGEETAL+E
Sbjct: 168 YIYIRGEFYNEASNLQIAIREAYQAGYLGKNACGSGYDFDVFVHRGAGAYICGEETALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG  W++ FGR  N GTK
Sbjct: 228 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVSPTICRRGGEWFASFGRTRNSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 288 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDD 347

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAAVIVM++ TD+I+AI RL  FYKHESCGQCTPCREG GW+ +
Sbjct: 348 VLMDFDALVAAQTGLGTAAVIVMNKQTDMIRAIARLLEFYKHESCGQCTPCREGVGWLHK 407

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID++YE+SK IEG TICALGD AAWP+QGL+++FRPL+EERI Q+ 
Sbjct: 408 MMGRFVSGNARVDEIDMVYELSKQIEGHTICALGDGAAWPVQGLVRHFRPLMEERIRQFQ 467


>gi|225682624|gb|EEH20908.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 515

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/424 (63%), Positives = 327/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  ++  G W    +I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 65  LKDQDRIFQNLYGHHGADLKTAIKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA  A+ A
Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYLHRGMGAYICGEETS 244

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI 
Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484

Query: 418 QYHR 421
            Y +
Sbjct: 485 NYEQ 488


>gi|226290045|gb|EEH45529.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 515

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/424 (63%), Positives = 327/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  ++  G W    +I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 65  LKDQDRIFQNLYGHHGADLKTAIKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA  A+ A
Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYLHRGMGAYICGEETS 244

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI 
Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484

Query: 418 QYHR 421
            Y +
Sbjct: 485 NYEQ 488


>gi|169606386|ref|XP_001796613.1| hypothetical protein SNOG_06231 [Phaeosphaeria nodorum SN15]
 gi|111064942|gb|EAT86062.1| hypothetical protein SNOG_06231 [Phaeosphaeria nodorum SN15]
          Length = 502

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/426 (63%), Positives = 327/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W    +IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 53  LKDQDRIFQNLYGHHGADLKSAMKYGDWHKTKEILLKGHDWIISEIKASGLRGRGGAGFP 112

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++  A+ A
Sbjct: 113 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 172

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   L+ A+ E Y +G +G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 173 TAAYIYIRGEFYHEAAVLERAIQEAYKAGFIGKNACGSGYDFDVYVHRGMGAYVCGEETS 232

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+
Sbjct: 233 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQ 292

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF+ISGHVN+PCTVEE MSI   ELI+KHCGG+ GGWDNL AVIPGGSS P LP   
Sbjct: 293 GTKLFAISGHVNHPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKAVIPGGSSTPILPKHV 352

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W
Sbjct: 353 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 412

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI 
Sbjct: 413 THQIMDRFNKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIQ 472

Query: 418 QYHRCN 423
            Y   N
Sbjct: 473 GYAEKN 478


>gi|289615344|emb|CBI57930.1| unnamed protein product [Sordaria macrospora]
          Length = 493

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/426 (63%), Positives = 330/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +IL KG DWII EVKASGLRGRGGAGF 
Sbjct: 44  LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 104 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 163

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI E   LQ A++E YA GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 164 TAAYIYIRGEFIHEAAVLQNAINEAYADGLIGKNACGSGYDFDVYIHRGAGAYVCGEETS 223

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++ FGRE N+
Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFASFGRERNQ 283

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 284 GTKLYCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 344 CDDQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 463

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 464 KFAQEN 469


>gi|296425638|ref|XP_002842347.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638611|emb|CAZ86538.1| unnamed protein product [Tuber melanosporum]
          Length = 499

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/426 (62%), Positives = 326/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W    +IL KG DWII E+K SGLRGRGGAGF 
Sbjct: 50  LKDQDRIFQNLYGHHGTDLKSAMKYGDWYKTKEILLKGHDWIIGEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +GMKWSFM          P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 110 SGMKWSFMTPPGWNTGTTPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMEA 169

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y++GL+G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 170 TAAYIYIRGEFYHEATVLQRAIQEAYSAGLIGKNACGSGYDFDVFVHRGMGAYVCGEETS 229

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA+VGL+GCP+TV NVE+++V PTI RRG SW++ FGR+ N 
Sbjct: 230 LIESLEGKPGKPRLKPPFPASVGLFGCPSTVANVETVSVAPTICRRGGSWFASFGRKRNE 289

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNL A+IPGGSS P LP   
Sbjct: 290 GTKLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLQAIIPGGSSTPILPRKI 349

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK++ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGT W
Sbjct: 350 CDDVLMDFDALKDVQSGLGTAAVIVMDKSTDVVRAISRLSKFYKHESCGQCTPCREGTRW 409

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++MER  KG  ++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E R+ 
Sbjct: 410 TAQIMERFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARMQ 469

Query: 418 QYHRCN 423
            + + +
Sbjct: 470 AHAQAS 475


>gi|322710840|gb|EFZ02414.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 486

 Score =  568 bits (1464), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/426 (62%), Positives = 329/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +I+ KG DWIINE+KASGLRGRGGAGF 
Sbjct: 37  LKDQDRIFQNLYGRFPPDLKSAKKMGDWHKTKEIILKGHDWIINEIKASGLRGRGGAGFP 96

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 97  SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 156

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E   LQ A++E Y  GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 157 TAAYIYIRGEFVYEAAVLQNAINEAYKDGLIGKNACGSGYDFDVFIHRGGGAYVCGEETS 216

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+
Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 276

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLA+IPGGSS P LP   
Sbjct: 277 GTKLYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAIIPGGSSTPILPKNI 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R  +G  ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 397 TEQIMSRFERGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 457 KFAQEN 462


>gi|288856265|ref|NP_001165788.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           [Nasonia vitripennis]
          Length = 472

 Score =  568 bits (1464), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/421 (63%), Positives = 321/421 (76%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W    +IL+KG DWIINEVK SGLRGRGGAGF 
Sbjct: 45  LKDEDRIFTNLYGRHDWRLKGAMKRGDWYKTKEILDKGADWIINEVKVSGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLV+N DE EPGTCKDR+I+RH+PH LIEGC+IA  A+GA  A
Sbjct: 105 SGMKWSFMNKPSDGRPKYLVINGDEGEPGTCKDREILRHDPHKLIEGCLIAGRAMGACAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  + Q A+ E Y +GLLG N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 165 YIYIRGEFYNEASNTQVAIAEAYQAGLLGKNACGSGYDFDVFVQRGAGAYICGEETALIE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV P I RRG SW++ FGR  N GTK
Sbjct: 225 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPAICRRGGSWFASFGRPRNSGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L++ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL +IPGGSS P +P      
Sbjct: 285 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGIIPGGSSTPVIPKHICDT 344

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD L  + S  GTAA+IVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 345 VLMDYDDLVRVQSSFGTAAIIVMNKQTDIIKAIARLISFYKHESCGQCTPCREGIAWMYK 404

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M+R V+G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE R+  + 
Sbjct: 405 IMQRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIESRMLNFK 464

Query: 421 R 421
           +
Sbjct: 465 K 465


>gi|170112662|ref|XP_001887532.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164637434|gb|EDR01719.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 501

 Score =  568 bits (1464), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 267/426 (62%), Positives = 327/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN Y      +  ++SRG W     I+ KG  WII ++K SGLRGRGGAGF 
Sbjct: 41  LKDQDRIFTNAYCRHDHGIKGALSRGDWHRTKDIILKGDAWIIQQIKDSGLRGRGGAGFP 100

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLV+NADE EPGTCKDR+I+R +PH LIEGC++A  ++ A
Sbjct: 101 SGLKWSFMNKPGWQNDPRPRYLVINADEGEPGTCKDREILRGDPHKLIEGCLVAGRSMNA 160

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF +E   +Q A+ E Y +GLLG N+   GY  D+ VH GAGAYICGEETA
Sbjct: 161 TAAYIYIRGEFYQEASHVQQAIHEAYTAGLLGPNACGSGYAFDVYVHRGAGAYICGEETA 220

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRGASW++GFGRE N+
Sbjct: 221 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGASWFAGFGRERNQ 280

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PC VEE MSI   +LIEKHCGG+ GGWDNLL ++PGGSSVP +P   
Sbjct: 281 GTKLYCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVVGGWDNLLGIVPGGSSVPVIPKDV 340

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK+  +GLGT AVIVM++STDI+ AI R S FYKHESCGQCTPCREGT W
Sbjct: 341 CAEVLMDYDSLKDAQTGLGTGAVIVMNKSTDIVAAIARFSQFYKHESCGQCTPCREGTTW 400

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM +M R+V+G    REID+L E++K +EGRTICALGDAAAWPIQGL+++FRP +E RI 
Sbjct: 401 MMNMMNRMVEGRGHLREIDMLLELTKQVEGRTICALGDAAAWPIQGLMRHFRPEVERRIQ 460

Query: 418 QYHRCN 423
           ++   N
Sbjct: 461 EFRAVN 466


>gi|328856677|gb|EGG05797.1| hypothetical protein MELLADRAFT_43743 [Melampsora larici-populina
           98AG31]
          Length = 510

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/426 (62%), Positives = 330/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF N Y      L  + +RG W     I+ KG D++I E+K SGLRGRGGAGF 
Sbjct: 49  LRDSDRIFQNAYMRHDHLLKGAQARGDWHRTKDIILKGHDYLIKEIKDSGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K   +   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 109 SGLKWSFMNKPGFEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 168

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI E   LQ A++E Y +GL+G N+   GYD D+ +H GAGAYICGEETA
Sbjct: 169 SAAYIYIRGEFIMEAAHLQNAIEEAYKAGLIGKNACNSGYDFDVYLHRGAGAYICGEETA 228

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI+RRGASW++ FGRE N 
Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIIRRGASWFNSFGRERNS 288

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PC VEE MSI   +LI+KHCGG+ GGWDNLL ++PGGSSVP L   +
Sbjct: 289 GTKLFCISGHVNTPCVVEEEMSIPLRDLIDKHCGGVIGGWDNLLGIVPGGSSVPVLTKPE 348

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
              A+MD+D LK++ SGLGT AVIVM++STD+I AI R + FYKHESCGQCTPCREGT W
Sbjct: 349 CEEALMDFDSLKDLQSGLGTGAVIVMNKSTDMISAIARFAKFYKHESCGQCTPCREGTTW 408

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M ++M+RLV G A +RE+D+L+E+++ IEG TICALGDAAAWPIQGL++ F+P +E RI 
Sbjct: 409 MEKIMDRLVVGRAHERELDMLWELTRQIEGHTICALGDAAAWPIQGLLRKFKPEVEARIQ 468

Query: 418 QYHRCN 423
           ++   N
Sbjct: 469 EFRSKN 474


>gi|321467624|gb|EFX78613.1| hypothetical protein DAPPUDRAFT_53209 [Daphnia pulex]
          Length = 437

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     LS +M RG W    +IL KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 8   LKDEDRIFTNLYGRHDWRLSGAMKRGDWYKTKEILLKGVDWILNEVKKSGLRGRGGAGFP 67

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 68  SGMKWSFMNKPSDGRPRYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 127

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y  GL+G N+ + GYD D+ VH GAGAYICGEETAL+E
Sbjct: 128 YIYIRGEFYNEGTNVQVAIHEAYKQGLIGKNACESGYDFDVFVHRGAGAYICGEETALIE 187

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++G++GCPTTV NVE++AV PTI RRG  W+ GFGR  N GTK
Sbjct: 188 SIEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTICRRGGDWFVGFGRPRNSGTK 247

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H  G+ GGWDNLLAVIPGGSS P +P      
Sbjct: 248 LFNISGHVNNPCTVEEEMSIPLRELIERHARGVVGGWDNLLAVIPGGSSTPMIPRKVCDD 307

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAA+IVM++ TD+I+AI RL  FYKHESCGQCTPCREGTGWM +
Sbjct: 308 VLMDFDALVAAQTGLGTAALIVMNKQTDVIRAIARLIEFYKHESCGQCTPCREGTGWMNK 367

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R V+G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ ++
Sbjct: 368 IMYRFVEGNAKPEEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPEIEDRMKRF 426


>gi|224009243|ref|XP_002293580.1| hypothetical protein THAPSDRAFT_29850 [Thalassiosira pseudonana
           CCMP1335]
 gi|220970980|gb|EED89316.1| hypothetical protein THAPSDRAFT_29850 [Thalassiosira pseudonana
           CCMP1335]
          Length = 499

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/417 (64%), Positives = 327/417 (78%), Gaps = 1/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+DQDRIFTNLYG Q   L D++ RG +    +++  G DWI+ E+K SGLRGRGGAGF 
Sbjct: 44  LSDQDRIFTNLYGEQDWRLKDALKRGDYHLTKEMMWMGPDWIVQEIKDSGLRGRGGAGFP 103

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP +LVVNADESEPGTCKDR+IMR +PH LIEGC+IA +A+ A  A
Sbjct: 104 SGLKWSFMPKESDGRPSFLVVNADESEPGTCKDREIMRKDPHKLIEGCLIAGYAMRARAA 163

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+  E   L  A+ E YA+GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 164 YIYIRGEYFNEAVVLDEAIHEAYAAGLIGKNACGSGYDFDVYLHRGAGAYICGEETALIE 223

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++G+PRLKPPFPA VGL+GCP+TV NVE++AV PTILRRGASW++GFG  NNRGTK
Sbjct: 224 SLEGRQGKPRLKPPFPAGVGLFGCPSTVTNVETVAVSPTILRRGASWFAGFGNPNNRGTK 283

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV  P  VEESMSI   ELIEKHCGG+R GWD L A IPGGSSVP L   Q   
Sbjct: 284 LFAISGHVKNPIVVEESMSIPLQELIEKHCGGMRNGWDTLQACIPGGSSVPVLNKAQCDE 343

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+M++D L+  GSGLGTAAV + D S D++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 344 ALMEFDDLRAKGSGLGTAAVTMFDNSVDMVGAIRRLSHFYKHESCGQCTPCREGTSWLED 403

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ R+ KG A KREI +L E+S+ IEG TICALGDAAAWP+QGL+++F+  IE+RID
Sbjct: 404 ILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQGLLRHFKKDIEDRID 460


>gi|3032|emb|CAA39676.1| 51 kD subunit of NADH dehydrogenase (ubiquinone) [Neurospora
           crassa]
          Length = 493

 Score =  568 bits (1463), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 270/426 (63%), Positives = 329/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +IL KG DWII EVKASGLRGRGGAGF 
Sbjct: 44  LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM        D+P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 104 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 163

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI+E   LQ A++E YA GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 164 TAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 223

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+  V PTI RRG +W++GFGRE N+
Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETAVVAPTICRRGGNWFAGFGRERNQ 283

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 284 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 344 CDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  ++REID+L E++K +EG TICALG+  AWPIQGLI++FRP +E RI 
Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGERFAWPIQGLIRHFRPELEARIR 463

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 464 KFAQEN 469


>gi|189183823|ref|YP_001937608.1| NADH dehydrogenase I subunit F [Orientia tsutsugamushi str. Ikeda]
 gi|189180594|dbj|BAG40374.1| NADH dehydrogenase I chain F [Orientia tsutsugamushi str. Ikeda]
          Length = 422

 Score =  567 bits (1462), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/421 (64%), Positives = 326/421 (77%), Gaps = 2/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +D+IFTNL G     L+ +  RG W     ++   R+WII E+K SGLRGRGGAGF
Sbjct: 1   MLNIEDKIFTNLSGSMAVDLASAKKRGDWHATKDLILNSREWIIEEIKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  S++  YLVVNADESEPGTCKDRDI+R+EPH LIEGC++A++AIGA  
Sbjct: 61  PTGLKWSFMPK-NSEKATYLVVNADESEPGTCKDRDIIRYEPHKLIEGCLLAAYAIGAQT 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+  E   LQ A+ E Y + L+G NS    ++ ++ +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEYYNEALILQNAIQEAYDARLIGLNSCGTDFNFNLYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPAN+GLYGCPTT+NNVESIAVVPTILRRGA W++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPANIGLYGCPTTINNVESIAVVPTILRRGAKWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FSISGHVN PC +EE+M +    LIEK+ GG+RGGWDNL A+IPGGSSVP +P     
Sbjct: 240 KIFSISGHVNNPCNIEEAMGVPLKYLIEKYAGGVRGGWDNLKAIIPGGSSVPLIPKNICD 299

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D LK +GSGLGT  +IVMD +TDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 300 TVEMDFDSLKSVGSGLGTGGIIVMDNNTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M RLVKG A   +ID+L +V+K IEG TICALGDAAAWPIQGLIK+FR  IE+RI  +
Sbjct: 360 RIMMRLVKGSASVSDIDMLLDVTKQIEGNTICALGDAAAWPIQGLIKHFRHEIEDRIKNF 419

Query: 420 H 420
           +
Sbjct: 420 N 420


>gi|72087543|ref|XP_791098.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1
           (ndufv1) isoform 2 [Strongylocentrotus purpuratus]
 gi|115924268|ref|XP_001178353.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1
           (ndufv1) isoform 1 [Strongylocentrotus purpuratus]
          Length = 471

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/420 (63%), Positives = 327/420 (77%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M+RG W    +IL KG DWI+ E++ SGLRGRGGAGF 
Sbjct: 42  LKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEILLKGHDWILKEIRDSGLRGRGGAGFP 101

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+GA  A
Sbjct: 102 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 161

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   GYD D+ +H GAGAYICGEETA++E
Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGYLGKNACGSGYDFDVYMHRGAGAYICGEETAVIE 221

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRGA W++GFGRE N+GTK
Sbjct: 222 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPIICRRGAPWFAGFGRERNQGTK 281

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG+VN PCTVEESMSI    LIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 282 LFNISGNVNTPCTVEESMSIPLKVLIEKHAGGVEGGWDNLLAVIPGGSSTPMIPKDVCDD 341

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAAVIVM++  D+I+ I RL  FY+HESCGQCTPCREGTGWM +
Sbjct: 342 VLMDFDALVAAQTGLGTAAVIVMNKQADVIRCIARLMEFYQHESCGQCTPCREGTGWMTK 401

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  R V+G A+  EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R+ ++H
Sbjct: 402 ITNRFVEGNAKPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMKKFH 461


>gi|115647097|ref|XP_001178525.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1
           (ndufv1) isoform 1 [Strongylocentrotus purpuratus]
 gi|115924266|ref|XP_001178444.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1
           (ndufv1) isoform 2 [Strongylocentrotus purpuratus]
          Length = 471

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/420 (63%), Positives = 327/420 (77%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M+RG W    +IL KG DWI+ E++ SGLRGRGGAGF 
Sbjct: 42  LKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEILLKGHDWILKEIRDSGLRGRGGAGFP 101

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+GA  A
Sbjct: 102 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 161

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   GYD D+ +H GAGAYICGEETA++E
Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGYLGKNACGSGYDFDVYMHRGAGAYICGEETAVIE 221

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRGA W++GFGRE N+GTK
Sbjct: 222 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPIICRRGAPWFAGFGRERNQGTK 281

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG+VN PCTVEESMSI    LIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 282 LFNISGNVNTPCTVEESMSIPLKVLIEKHAGGVEGGWDNLLAVIPGGSSTPMIPKDVCDD 341

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAAVIVM++  D+I+ I RL  FY+HESCGQCTPCREGTGWM +
Sbjct: 342 VLMDFDALVAAQTGLGTAAVIVMNKQADVIRCIARLMEFYQHESCGQCTPCREGTGWMTK 401

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  R V+G A+  EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R+ ++H
Sbjct: 402 ITNRFVEGNAKPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMKKFH 461


>gi|255724736|ref|XP_002547297.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|15425872|gb|AAK97627.1|AF399714_1 NADH dehydrogenase complex I 51 kDa subunit [Candida tropicalis]
 gi|240135188|gb|EER34742.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 489

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/423 (63%), Positives = 328/423 (77%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 33  LKDQDRIFQNVYGNYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 92

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A  A+ A
Sbjct: 93  SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 152

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEETA
Sbjct: 153 TAAYIYIRGEFYNETVILQNAINEAYKAGLIGKNACGSGYDFDVYIHRGMGAYVCGEETA 212

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG  W++ FGRE N 
Sbjct: 213 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNS 272

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   EL+EKHCGGI+GGWDNLL VIPGGSSVP +P   
Sbjct: 273 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIKGGWDNLLGVIPGGSSVPIMPKET 332

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W
Sbjct: 333 CDHVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 392

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R+M+R  KG A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI 
Sbjct: 393 LQRMMDRFYKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 452

Query: 418 QYH 420
           Q+ 
Sbjct: 453 QFQ 455


>gi|330914723|ref|XP_003296758.1| hypothetical protein PTT_06938 [Pyrenophora teres f. teres 0-1]
 gi|311330967|gb|EFQ95153.1| hypothetical protein PTT_06938 [Pyrenophora teres f. teres 0-1]
          Length = 506

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/422 (63%), Positives = 325/422 (77%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +   G W    +IL KG +WII+E+KASGLRGRGGAGF 
Sbjct: 57  LKDQDRIFQNLYGHHGADLKSAQKYGDWHKTKEILLKGHEWIISEIKASGLRGRGGAGFP 116

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 117 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 176

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 177 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETS 236

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++GFGRE N+
Sbjct: 237 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFAGFGRERNQ 296

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL++ISGHVN PC VEE MSI   +LIEKHCGG+RGGWDNL AVIPGGSS P LP   
Sbjct: 297 GTKLYAISGHVNRPCVVEEEMSIPLRDLIEKHCGGVRGGWDNLKAVIPGGSSTPILPKHI 356

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W
Sbjct: 357 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 416

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI 
Sbjct: 417 THQIMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIK 476

Query: 418 QY 419
            Y
Sbjct: 477 DY 478


>gi|332024708|gb|EGI64897.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           [Acromyrmex echinatior]
          Length = 470

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 264/421 (62%), Positives = 325/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +MSRG W    +I++KG DWIINE+K SGLRGRGGAGF 
Sbjct: 45  LADEDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIIDKGADWIINEIKISGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLV+N DE EPGTCKDR+I+RH+PH L+EGC+IA  A+GA  A
Sbjct: 105 SGMKWSFMNKPSDGRPKYLVINGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD DI V  GAGAYICGEETAL+E
Sbjct: 165 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACNSGYDFDIFVQRGAGAYICGEETALIE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 225 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L++ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 285 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 344

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            ++D+D L  + S  GTAAVIVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 345 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMYK 404

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R V+G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE R+++  
Sbjct: 405 ILKRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMNEQK 464

Query: 421 R 421
           R
Sbjct: 465 R 465


>gi|156042201|ref|XP_001587658.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Sclerotinia sclerotiorum 1980]
 gi|154696034|gb|EDN95772.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 508

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/426 (63%), Positives = 322/426 (75%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L+ +   G W     IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 59  LRDQDRIFQNLYGHHGADLASAKKYGDWHRTKDILAKGHDWIISEIKASGLRGRGGAGFP 118

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +GMKWSFM        ++P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+  
Sbjct: 119 SGMKWSFMNFKGWENDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNC 178

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y  GL+G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 179 TAAYIYIRGEFYHEATVLQRAIQEAYKDGLIGKNACGSGYDFDVYVHRGMGAYVCGEETS 238

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA+VGL+GCP+TV NVE+IAV PTI RRG  W++ FGRE N 
Sbjct: 239 LIESLEGKPGKPRLKPPFPASVGLFGCPSTVANVETIAVAPTICRRGGDWFASFGRERNA 298

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNL AVIPGGSS P LP   
Sbjct: 299 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKNV 358

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 359 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 418

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 419 TEQIMQRFEKGQGKIREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMK 478

Query: 418 QYHRCN 423
            Y   N
Sbjct: 479 DYAEKN 484


>gi|322791265|gb|EFZ15789.1| hypothetical protein SINV_06284 [Solenopsis invicta]
          Length = 469

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/423 (62%), Positives = 322/423 (76%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  +MSRG W    +I+EKG DWIINE+K SGLRGRGGAGF 
Sbjct: 44  LADQDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIIEKGADWIINEIKVSGLRGRGGAGFP 103

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVN DE EPGTCKDR+I+RH+PH L+EGC+IA  A+GA  A
Sbjct: 104 SGMKWSFMNKPSDGRPKYLVVNGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 163

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  + Q A+ E Y +GL+G N+   GYD DI V  GAGAYICGEETAL+E
Sbjct: 164 YIYIRGEFYNEASNTQVAIAEAYQAGLIGKNACNSGYDFDIFVQRGAGAYICGEETALIE 223

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RR  +W++ FGR  N GTK
Sbjct: 224 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRSGAWFASFGRPRNTGTK 283

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L++ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 284 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 343

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            ++D+D L  + S  GTAAVIVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 344 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLMSFYKHESCGQCTPCREGISWMHK 403

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R V+G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE R+ +  
Sbjct: 404 ILKRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMKEQK 463

Query: 421 RCN 423
           R  
Sbjct: 464 RAT 466


>gi|154332191|ref|XP_001561912.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134059233|emb|CAM36932.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 481

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/424 (63%), Positives = 327/424 (77%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY   G  ++ +  RG W     IL KG DW++NE+KASGLRGRGGAGF 
Sbjct: 20  LRDQDRIFTNLYEDFGTGINAAERRGDWYRTKDILLKGHDWVVNEIKASGLRGRGGAGFP 79

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D RP Y+VVN DESEPGTCKDR+IMRHEPH L+EG ++A FA+ A  
Sbjct: 80  SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKLVEGALVAGFAMRARY 139

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  S+  A+ E Y  G LG N+   G+D D+  + GAGAYICGEETA++
Sbjct: 140 GYIYIRGEFYNEWRSVDKAIHEAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETAMI 199

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG  W++ FGR+ N GT
Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELIE+H GG+RGGWDNLL VIPGGSS P +P     
Sbjct: 260 KLFCISGHVNRPCTVEEEMSIPLQELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE  +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ 
Sbjct: 320 NILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+K EI  L++VSK +EGR+ICALG AAAWP+QGLI++FRPL+EERID++
Sbjct: 380 KMMKRFVHGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFRPLMEERIDRF 439

Query: 420 HRCN 423
              N
Sbjct: 440 WEAN 443


>gi|219112977|ref|XP_002186072.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582922|gb|ACI65542.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 493

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/430 (63%), Positives = 332/430 (77%), Gaps = 5/430 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
            L+DQDRIFTNLYG Q   L D++ RG +    +I+  G DWII E+K SGLRGRGGAGF
Sbjct: 38  FLSDQDRIFTNLYGEQDWRLPDAIKRGDYHLTKEIMCMGPDWIIQEIKDSGLRGRGGAGF 97

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            +G+KWSFMPK    RP +LVVNADESEPGTCKDR+IMR +PH LIEGC++A +A+ A  
Sbjct: 98  PSGLKWSFMPKETDGRPSFLVVNADESEPGTCKDREIMRKDPHKLIEGCILAGYAMRARA 157

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+  E   L  A+ E YA+GLLG N+   GYD DI +H GAGAYICGEETAL+
Sbjct: 158 AYIYIRGEYFNEAVVLDEAIHEAYAAGLLGKNACGSGYDYDIYLHRGAGAYICGEETALI 217

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G+PRLKPPFPA VGL+GCP+TV NVE++AV PTILRRGASW++ FG ENNRGT
Sbjct: 218 ESLEGKQGKPRLKPPFPAGVGLFGCPSTVTNVETVAVAPTILRRGASWFASFGNENNRGT 277

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHV  P  VEESMSI   +LI+KHCGG+R GW+++ A IPGGSSVP L   Q  
Sbjct: 278 KLFAISGHVKNPMVVEESMSIPLRDLIDKHCGGMRNGWESVQACIPGGSSVPVLNKDQCG 337

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+M++D L+  GSGLGTAAV + D + D++ AI RLS FYKHESCGQCTPCREGTGW+ 
Sbjct: 338 EALMEFDDLRAKGSGLGTAAVTMFDNTVDMVGAIRRLSHFYKHESCGQCTPCREGTGWLE 397

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ R+ KG A KREI +L E+S+ IEG TICALGDAAAWP+QGL+++F+  IE+RID  
Sbjct: 398 DILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQGLLRHFKKDIEDRIDNP 457

Query: 420 ----HRCNFQ 425
               H   FQ
Sbjct: 458 KGFDHEAAFQ 467


>gi|50424275|ref|XP_460724.1| DEHA2F08360p [Debaryomyces hansenii CBS767]
 gi|49656393|emb|CAG89064.1| DEHA2F08360p [Debaryomyces hansenii]
          Length = 487

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+Y   G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 32  LKDQDRIFQNVYNKYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 91

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A  A+ A
Sbjct: 92  SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 151

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y  GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 152 TAAYIYIRGEFYNEAVILQQAINEAYKEGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 211

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTILRRG  W++ FGR+NN 
Sbjct: 212 LIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRKNNT 271

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   EL+EKHCGG++GGWDNLL VIPGG SVP +P   
Sbjct: 272 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGCSVPVMPKSV 331

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                MDYD L+++GSGLGTAAVIVM++ TD+I+AI R + FYKHESCGQCTPCREGT W
Sbjct: 332 CDDIAMDYDALRDVGSGLGTAAVIVMNKETDMIRAIQRFAAFYKHESCGQCTPCREGTTW 391

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + ++M+R VKG A ++EID+++E++K IEG TICALGDAAAWPIQGLIK+FRPL+ +RI 
Sbjct: 392 LQKMMDRFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPLMVDRIK 451

Query: 418 QYHR 421
           QY +
Sbjct: 452 QYEQ 455


>gi|196010577|ref|XP_002115153.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190582536|gb|EDV22609.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 442

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/434 (61%), Positives = 331/434 (76%), Gaps = 12/434 (2%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + D+DRIFTNLYG     L  ++SRG W    +IL KG +WI+NEVK SGLRGRGGAGF 
Sbjct: 1   IKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGHEWILNEVKKSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  ++GA  A
Sbjct: 61  SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 120

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A++E Y +GL+G N+   GYD DI +H GAGAYICGEETAL+E
Sbjct: 121 YIYIRGEFYNEASNMQIAINEAYKAGLIGKNACSSGYDFDIFMHRGAGAYICGEETALIE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV P I RRG  W++ FGRE N GTK
Sbjct: 181 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPAICRRGGDWFASFGRERNSGTK 240

Query: 241 -----------LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
                      LF ISGHVN PCTVEE MS+   ELIEKH GG+ GGWDNLL +IPGGSS
Sbjct: 241 ASLIIIFGYFDLFCISGHVNAPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLGIIPGGSS 300

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
           VP +P       +MD+D L+++ SGLGTAAVIVM++ +D+IK I RL  FYKHESCGQCT
Sbjct: 301 VPVIPRRICDDVLMDFDALQQVQSGLGTAAVIVMNKQSDMIKCISRLMDFYKHESCGQCT 360

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           PCREGTGW+ ++M R V+G A   EID++ E+S+ IEG TICALGDAAAWP+QGL+++FR
Sbjct: 361 PCREGTGWLAKIMARFVEGNADPEEIDMIEELSRQIEGHTICALGDAAAWPVQGLVRHFR 420

Query: 410 PLIEERIDQYHRCN 423
             + ERI+QY   N
Sbjct: 421 HEMLERIEQYKAKN 434


>gi|242019360|ref|XP_002430129.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212515220|gb|EEB17391.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 472

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/418 (63%), Positives = 323/418 (77%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +  RG W    +IL KG DWIINE+K SGLRGRGGAGF 
Sbjct: 45  LCDDDRIFTNLYGRHDWRLCGAYKRGDWYKTKEILHKGPDWIINEIKISGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+I+R++PH LIEGC++A  A+GA  A
Sbjct: 105 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREILRNDPHKLIEGCLVAGRAMGAQAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 165 YIYIRGEFYNEASNMQIAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++G++GCPTTV+NVE++AV PTI RRG SW++ FGR  N GTK
Sbjct: 225 SIEGKQGKPRLKPPFPADIGVFGCPTTVSNVETVAVAPTICRRGGSWFASFGRPRNSGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELI+ H G + GGWDNLLA+IPGGSS P +P      
Sbjct: 285 LFNISGHVNNPCTVEEEMSIPLKELIQLHAGDVIGGWDNLLAIIPGGSSTPLIPKDVCEE 344

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DGL  + + LGTAAVIVM++ TDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 345 AIMDFDGLVAVQTSLGTAAVIVMNKQTDIVKAIARLIEFYKHESCGQCTPCREGINWMNK 404

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++ R + G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E R++ 
Sbjct: 405 IIHRFITGNAEPGEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMEN 462


>gi|312221816|emb|CBY01756.1| similar to NADH-ubiquinone oxidoreductase 51 kDa subunit
           [Leptosphaeria maculans]
          Length = 508

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/422 (62%), Positives = 324/422 (76%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W    +IL KG DWII+E+K SGLRGRGGAGF 
Sbjct: 59  LKDQDRIFQNLYGHHGADLKSAMKYGDWHKTKEILLKGHDWIISEIKTSGLRGRGGAGFP 118

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM        D+P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 119 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 178

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   L+ A+ E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 179 TAAYIYIRGEFYHEAAVLERAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETS 238

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++ FGRE N+
Sbjct: 239 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFASFGRERNQ 298

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL++ISGHVN PC VEE MSI   ELI+KHCGG+RGGWDNL AVIPGGSS P LP   
Sbjct: 299 GTKLYAISGHVNKPCVVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKHI 358

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W
Sbjct: 359 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 418

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI 
Sbjct: 419 THQIMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIK 478

Query: 418 QY 419
            Y
Sbjct: 479 DY 480


>gi|307174607|gb|EFN65028.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           [Camponotus floridanus]
          Length = 468

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/421 (62%), Positives = 324/421 (76%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DR+FTNLYG     L  +MSRG W    +IL+KG DWIINE+K SGLRGRGGAGF 
Sbjct: 44  LSDEDRVFTNLYGRHDWRLKGAMSRGDWYKTKEILDKGSDWIINEIKISGLRGRGGAGFP 103

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLV+N DE EPGTCKDR+I+RH+PH L+EGC+IA  A+GA  A
Sbjct: 104 SGMKWSFMNKPADGRPKYLVINGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 163

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q AV E Y +GL+G NS   GYD DI +  GAGAYICGEETAL+E
Sbjct: 164 YIYIRGEFYNEASNMQVAVAEAYQAGLIGKNSCGSGYDFDIFIVRGAGAYICGEETALIE 223

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 224 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 283

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELI++H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 284 LFNISGHVNNPCTVEEEMSIPLRELIDRHAGGVIGGWDNLLGVIPGGSSTPVIPKSACDT 343

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            ++D+D L  + S  GTAAVIVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 344 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMFK 403

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R V G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE R+ +  
Sbjct: 404 ILKRFVDGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARLKEQK 463

Query: 421 R 421
           R
Sbjct: 464 R 464


>gi|322825181|gb|EFZ30268.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 484

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/424 (63%), Positives = 325/424 (76%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G +++ +  RG W     IL KG DW+I E+KASGLRGRGGAGF 
Sbjct: 23  LKDQDRIFLNLYNDFGTNIASAERRGDWYRTKDILLKGHDWVIAEMKASGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPKV  D RP YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 83  SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+RGEF  E  S++ A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG  G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG  W+S FGR+NN G 
Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPQWFSSFGRKNNAGV 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVE+ MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE+ +GLGTAAVIVMD+STD+I AI R+S FY +ESCGQCTPCREG+ W+ 
Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKSTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M R V G A+K EI  + +VSK +EGRTICAL  AAAWP+QGL ++F P++EERI++Y
Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442

Query: 420 HRCN 423
              N
Sbjct: 443 WEAN 446


>gi|312066286|ref|XP_003136198.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Loa loa]
 gi|307768633|gb|EFO27867.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Loa loa]
          Length = 468

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/419 (63%), Positives = 319/419 (76%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M  G W    ++L KG+DWII E+ ASG+RGRGGAGF 
Sbjct: 33  LRDEDRIFTNLYGRYDFRLKSAMKLGDWYKTKEVLLKGQDWIIKEMSASGMRGRGGAGFP 92

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM +    RP YL +NADE EPGTCKDR+++RH PH LIEG +IA +A+GA  A
Sbjct: 93  TGIKWSFMKRPFDGRPKYLCINADEGEPGTCKDREVIRHHPHKLIEGALIAGYAMGARAA 152

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A+ E Y +G +G NS   GY  D+ +H GAGAYICGEETAL+E
Sbjct: 153 YIYIRGEFYNEACILQEAIHEAYKAGFIGKNSCDTGYSFDVFIHRGAGAYICGEETALIE 212

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTVNN+E+IA  P I +RGA WYS FGRE N GTK
Sbjct: 213 SIEGKQGKPRLKPPFPADIGLFGCPTTVNNIETIASAPAICKRGAEWYSSFGRERNHGTK 272

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHV  PCTVEE MSI   ELIE+HCGG+ GGWDNL+A+IPGGSSVP +P      
Sbjct: 273 LYCISGHVVNPCTVEEEMSIPLKELIERHCGGVIGGWDNLMAIIPGGSSVPMIPKDICET 332

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD L  + +GLGTAAVIVM++  DI+K I RLS FY+HESCGQCTPCREGT W+  
Sbjct: 333 VLMDYDALIAVQTGLGTAAVIVMNKEVDIVKCIARLSHFYRHESCGQCTPCREGTKWLNS 392

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IE  TICALGDAAAWPIQGLI++FRP IE RI  Y
Sbjct: 393 VMWRFVKGQAKPSEIDSLWEISKQIEAHTICALGDAAAWPIQGLIRHFRPEIEHRISDY 451


>gi|58579167|ref|YP_197379.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417793|emb|CAI26997.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 425

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/423 (65%), Positives = 325/423 (76%), Gaps = 2/423 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+D++FTNL G     L  + SRG W N+  IL  G + II EVK SGLRGRGGAGF
Sbjct: 1   MLEDKDKVFTNLSGQGSPFLKSAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK   + +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+   
Sbjct: 61  STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEF  E   L  A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA 
Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA +  ILRRG++W++  G+ENN G
Sbjct: 181 LESLEGRKGNPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP    
Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM
Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++M +LVKG A   +IDLL  +S  IEG TICALGDAAAWP+QGLI++FR +IEERID 
Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420

Query: 419 YHR 421
             R
Sbjct: 421 CIR 423


>gi|57239209|ref|YP_180345.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161288|emb|CAH58209.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 425

 Score =  565 bits (1457), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/423 (65%), Positives = 325/423 (76%), Gaps = 2/423 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+D++FTNL G     L  + SRG W N+  IL  G + II EVK SGLRGRGGAGF
Sbjct: 1   MLEDKDKVFTNLSGQGSPFLKSAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK   + +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+   
Sbjct: 61  STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEF  E   L  A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA 
Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA +  ILRRG++W++  G+ENN G
Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP    
Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM
Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++M +LVKG A   +IDLL  +S  IEG TICALGDAAAWP+QGLI++FR +IEERID 
Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420

Query: 419 YHR 421
             R
Sbjct: 421 CIR 423


>gi|323508270|emb|CBQ68141.1| probable NADH2 dehydrogenase (ubiquinone) flavoprotein 1
           [Sporisorium reilianum]
          Length = 508

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/426 (62%), Positives = 325/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N Y      L  + +RG W     IL KG DWII+++K SG+RGRGGAGF 
Sbjct: 49  LRDQDRIFQNAYMRHDHGLKGAKARGDWHRTKDILLKGHDWIISQMKESGMRGRGGAGFP 108

Query: 62  TGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 109 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREIMRGDPHKLIEGCLVAGRAMNA 168

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IYVRGEF  E   LQ A+ E YA GL+G N+   GYD D+ VH GAGAYICGEETA
Sbjct: 169 NAAYIYVRGEFYLEVAHLQHAIKEAYADGLIGKNACGSGYDFDVYVHKGAGAYICGEETA 228

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++A  PTI+RRG +W++GFGR+ N+
Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAAAPTIIRRGPAWFAGFGRDKNQ 288

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF+ISGHVN PC VEE MSI   ELIE+HCGG+RGGWDNLL ++PGGSSVP LP  +
Sbjct: 289 GTKLFAISGHVNTPCVVEEEMSIPLQELIERHCGGVRGGWDNLLGIVPGGSSVPILPKHK 348

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D L+E  S LGT AVIVMD++TD+++AI R + FYKHESCGQCTPCREGT W
Sbjct: 349 CEQVLMDFDSLRENQSSLGTGAVIVMDKTTDVVQAISRFAKFYKHESCGQCTPCREGTTW 408

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +MER  +G    REID++ E++K +EG TICAL DAAAWPIQGL++ FRP IEER+ 
Sbjct: 409 LANMMERFEEGRGNLREIDMIQELTKQMEGHTICALADAAAWPIQGLLRWFRPEIEERMR 468

Query: 418 QYHRCN 423
            Y   N
Sbjct: 469 LYQEKN 474


>gi|154298519|ref|XP_001549682.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Botryotinia
           fuckeliana B05.10]
 gi|150858040|gb|EDN33232.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Botryotinia
           fuckeliana B05.10]
          Length = 509

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/426 (63%), Positives = 321/426 (75%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L+ +   G W     IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 60  LRDQDRIFQNLYGHHGADLASAKKYGDWHRTKDILAKGHDWIISEIKASGLRGRGGAGFP 119

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +GMKWSFM        ++P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+  
Sbjct: 120 SGMKWSFMNFKGWENDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNC 179

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y  GL+G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 180 TAAYIYIRGEFYHEATVLQRAIQEAYKDGLIGKNACGSGYDFDVYVHRGMGAYVCGEETS 239

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG  W++ FGRE N 
Sbjct: 240 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGDWFASFGRERNA 299

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNL AVIPGGSS P LP   
Sbjct: 300 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKDV 359

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 360 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 419

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 420 TEQIMKRFEKGQGRVREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMK 479

Query: 418 QYHRCN 423
            Y   N
Sbjct: 480 DYAEKN 485


>gi|254456627|ref|ZP_05070056.1| NADH oxidoreductase (quinone), F subunit [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083629|gb|EDZ61055.1| NADH oxidoreductase (quinone), F subunit [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 443

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 261/416 (62%), Positives = 323/416 (77%), Gaps = 1/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLY   G  L+ S  RG W N  ++ +KGRDWIINE+K+S LRGRGGAGF
Sbjct: 1   MLKDKDRIFQNLYNDLGSDLNSSQKRGDWVNTKELTDKGRDWIINEIKSSELRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSF PK    RPHYLV+N DESEPGTCKDRDI+R EPH LIEGC+IAS+A+ AH 
Sbjct: 61  PTGLKWSFAPKEVGSRPHYLVINGDESEPGTCKDRDILRFEPHKLIEGCLIASYAVQAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+  + + LQAA+DE Y   L+G N+   G+D+DI +H+GAGAYICGEETALL
Sbjct: 121 CYIYIRGEYFIDGQKLQAAIDEAYKKKLIGKNAAGTGWDLDIYIHYGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILRRG  W+S  GRE N GT
Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRRGGKWFSSLGRERNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISG+VN PC VEE M+I   ELIE H GG+ GGWDNL AVIPGGSS+P +P  +  
Sbjct: 241 KIFCISGNVNNPCNVEEEMNIPLKELIEVHAGGVIGGWDNLQAVIPGGSSMPLIPKKKCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L    SGLGTA ++V+++  DIIK + R++ FYKHESCGQCTPCREG+GWM 
Sbjct: 301 TLTMDFDSLMAEKSGLGTAGIVVINKDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R++ER+ KG A K EI++L +V+  I G TICA G+ ++WP+QGL+++F+  IEER
Sbjct: 361 RMLERMAKGEATKDEIEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFKKEIEER 416


>gi|148284884|ref|YP_001248974.1| NADH dehydrogenase I subunit F [Orientia tsutsugamushi str.
           Boryong]
 gi|146740323|emb|CAM80727.1| NADH dehydrogenase I chain F [Orientia tsutsugamushi str. Boryong]
          Length = 422

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 2/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +D+IFTNL G     L+ +  RG W     ++   R+WII E+K+SGLRGRGGAGF
Sbjct: 1   MLNIEDKIFTNLSGAMAVDLASAKKRGDWYTTKNLILNSREWIIEEIKSSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  S++  YLVVNADESEPGTCKDRDI+R+EPH LIEGC++A++AIGA  
Sbjct: 61  PTGLKWSFMPK-NSEKATYLVVNADESEPGTCKDRDIIRYEPHKLIEGCLLAAYAIGAQT 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+  E   LQ A+ E Y + L+G N+    ++ ++ +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEYYNEALILQNAIQEAYGARLIGLNACGTDFNFNLYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPAN GLYGCPTT+NNVESIAVVPTILRRGA W++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPANTGLYGCPTTINNVESIAVVPTILRRGAKWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FSISGHVN PC +EE+M +    LIEK+ GG+RGGWDNL A+IPGGSSVP +P     
Sbjct: 240 KIFSISGHVNNPCNIEEAMGVPLKYLIEKYAGGVRGGWDNLKAIIPGGSSVPLIPKNICD 299

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D LK +GSGLGT  +IVMD +TDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 300 TVEMDFDSLKAVGSGLGTGGIIVMDNNTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M RLV+G A   +ID++ +V+K IEG TICALGDAAAWPIQGLIK+FR  IE+RI  +
Sbjct: 360 RIMMRLVEGNASVSDIDMILDVTKQIEGNTICALGDAAAWPIQGLIKHFRHEIEDRIKNF 419

Query: 420 H 420
           +
Sbjct: 420 N 420


>gi|71410619|ref|XP_807595.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
           strain CL Brener]
 gi|70871631|gb|EAN85744.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 484

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/424 (63%), Positives = 325/424 (76%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G +++ +  RG W     IL KG DW+I E+KASGLRGRGGAGF 
Sbjct: 23  LKDQDRIFLNLYNDFGTNIASAERRGDWYRTKDILLKGHDWVIAEMKASGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPKV  D RP YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 83  SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+RGEF  E  S++ A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG  G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG  W+S FGR+NN G 
Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPQWFSSFGRKNNAGV 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVE+ MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE+ +GLGTAAVIVMD++TD+I AI R+S FY +ESCGQCTPCREG+ W+ 
Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKTTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M R V G A+K EI  + +VSK +EGRTICAL  AAAWP+QGL ++F P++EERI++Y
Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442

Query: 420 HRCN 423
              N
Sbjct: 443 WEAN 446


>gi|169771479|ref|XP_001820209.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|238485950|ref|XP_002374213.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           flavus NRRL3357]
 gi|83768068|dbj|BAE58207.1| unnamed protein product [Aspergillus oryzae]
 gi|220699092|gb|EED55431.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           flavus NRRL3357]
          Length = 496

 Score =  565 bits (1455), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/422 (62%), Positives = 329/422 (77%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LQDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGDDWLISELKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N 
Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN P TVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 287 GTKLYCISGHVNNPVTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 347 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSSFYRHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R+  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E +I 
Sbjct: 407 TQQIMQRMETGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEAKIR 466

Query: 418 QY 419
           ++
Sbjct: 467 EH 468


>gi|58617220|ref|YP_196419.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str. Gardel]
 gi|58416832|emb|CAI27945.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str.
           Gardel]
          Length = 425

 Score =  565 bits (1455), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/423 (65%), Positives = 325/423 (76%), Gaps = 2/423 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+D++FTNL G     L  + SRG W N+  IL  G + II EVK SGLRGRGGAGF
Sbjct: 1   MLEDKDKVFTNLSGQGSPFLKAAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK   + +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+   
Sbjct: 61  STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEF  E   L  A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA 
Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA +  ILRRG++W++  G+ENN G
Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP    
Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM
Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++M +LVKG A   +IDLL  +S  IEG TICALGDAAAWP+QGLI++FR +IEERID 
Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420

Query: 419 YHR 421
             R
Sbjct: 421 CIR 423


>gi|116202325|ref|XP_001226974.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Chaetomium globosum CBS 148.51]
 gi|88177565|gb|EAQ85033.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Chaetomium globosum CBS 148.51]
          Length = 495

 Score =  564 bits (1454), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 264/421 (62%), Positives = 325/421 (77%), Gaps = 4/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +I+ KG DWII EVKASGLRGRGGAGF 
Sbjct: 52  LRDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEIILKGHDWIIGEVKASGLRGRGGAGFP 111

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KW +      ++P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A  A
Sbjct: 112 SGLKWDWDK---DNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNASAA 168

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEFI E   LQ A++E YA GL+G N+   GYD D+ VH G GAY+CGEET+L+E
Sbjct: 169 YIYIRGEFIEEAAVLQNAINEAYADGLIGKNACNSGYDFDVYVHRGGGAYVCGEETSLIE 228

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+GTK
Sbjct: 229 SLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQGTK 288

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN P TVEE MSI   ELI+KHCGG+RGGWDNL AVIPGGSS P LP      
Sbjct: 289 LYCISGHVNNPATVEEEMSIPLRELIDKHCGGVRGGWDNLQAVIPGGSSTPILPKSVCDD 348

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK+  SGLGTAAVIVMD+S D+++AI RLS FY+HESCGQCTPCREG+ W  +
Sbjct: 349 QLMDFDALKDSQSGLGTAAVIVMDKSADVVRAISRLSHFYRHESCGQCTPCREGSKWTEQ 408

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M+R  KG+ ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Q+ 
Sbjct: 409 IMQRFEKGLGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQQFA 468

Query: 421 R 421
           +
Sbjct: 469 K 469


>gi|260945745|ref|XP_002617170.1| hypothetical protein CLUG_02615 [Clavispora lusitaniae ATCC 42720]
 gi|238849024|gb|EEQ38488.1| hypothetical protein CLUG_02615 [Clavispora lusitaniae ATCC 42720]
          Length = 486

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/424 (62%), Positives = 325/424 (76%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF N+YG  G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 32  LKDSDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 91

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A   + A
Sbjct: 92  SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRGMNA 151

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y SG LG N+   GYD D+ +H G GAYICGEETA
Sbjct: 152 TAAYIYIRGEFYNETTILQNAINEAYKSGFLGKNACGSGYDFDVYIHRGMGAYICGEETA 211

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG  W++ FGRE N 
Sbjct: 212 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGDWFASFGRERNA 271

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   EL+EKHCGG+ GGWDNLL VIPGG SVP +P   
Sbjct: 272 GTKLYCISGHVNEPCTVEEEMSIPLKELLEKHCGGVIGGWDNLLGVIPGGCSVPVMPKDV 331

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W
Sbjct: 332 CDNVLMDYDALKDVGSGLGTAAVIVMNKQTDIIRAIQRFSAFYKHESCGQCTPCREGTTW 391

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + ++M+R VKG A ++EID ++E++K IEG TICALGDAAAWPIQGLIK+FRP++ +RI+
Sbjct: 392 LQKMMDRFVKGQATEKEIDQIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPVMVDRIN 451

Query: 418 QYHR 421
           QY +
Sbjct: 452 QYQK 455


>gi|241951346|ref|XP_002418395.1| NADH dehydrogenase complex I subunit, putative [Candida
           dubliniensis CD36]
 gi|223641734|emb|CAX43695.1| NADH dehydrogenase complex I subunit, putative [Candida
           dubliniensis CD36]
          Length = 491

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 35  LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A  A+ A
Sbjct: 95  SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 154

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 155 TAAYIYIRGEFYNETVVLQNAINEAYKAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 214

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG  W++ FGRE N 
Sbjct: 215 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNS 274

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   EL+EKHCGGI GGWDNLL VIPGGSSVP +P   
Sbjct: 275 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIVGGWDNLLGVIPGGSSVPIMPKET 334

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W
Sbjct: 335 CDNVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 394

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R+M+R   G A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI 
Sbjct: 395 LQRMMDRFYTGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 454

Query: 418 QYHR 421
           ++ +
Sbjct: 455 EFQQ 458


>gi|302407582|ref|XP_003001626.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261359347|gb|EEY21775.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 477

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/426 (63%), Positives = 326/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NL G    +L+ +   G W    +IL KG +WII+EVKASGLRGRGGAGF 
Sbjct: 28  LKDSDRIFQNLNGRLPPTLASAKKMGDWHKTKEILAKGHEWIISEVKASGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 88  SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 147

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y  GL+G N+   GYD D+ VH GAGAY+CGEET+
Sbjct: 148 TAAYIYIRGEFYHEAAVLQTAINEAYKDGLIGKNACGSGYDFDVYVHRGAGAYVCGEETS 207

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++GFGRE N+
Sbjct: 208 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFAGFGRERNQ 267

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN P TVEE MSI   ELIEKHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 268 GTKLFCISGHVNNPVTVEEEMSIPLRELIEKHCGGVRGGWDNLLAVIPGGSSTPILPKDV 327

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREG+ W
Sbjct: 328 CDNQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYAHESCGQCTPCREGSKW 387

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  + REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E R+ 
Sbjct: 388 TDQIMKRFEKGQGRPREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARMA 447

Query: 418 QYHRCN 423
           +Y   N
Sbjct: 448 EYAAQN 453


>gi|39974413|ref|XP_368597.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Magnaporthe oryzae 70-15]
 gi|145018439|gb|EDK02718.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Magnaporthe oryzae 70-15]
          Length = 497

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/422 (63%), Positives = 322/422 (76%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +I+ KG DWII E+KASGLRGRGGAGF 
Sbjct: 48  LRDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEIILKGHDWIIGEIKASGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 108 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 167

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA GL+G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 168 TAAYIYIRGEFYHEAAVLQGAINEAYADGLIGKNACGSGYDFDVFVHRGGGAYVCGEETS 227

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+
Sbjct: 228 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQ 287

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISG VN PCTVEE MSI   ELIEKHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 288 GTKLFCISGQVNNPCTVEEEMSIPMRELIEKHCGGVRGGWDNLLAVIPGGSSTPILPKNI 347

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+S D+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSADVVRAIARLSHFYRHESCGQCTPCREGSKW 407

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R   G  + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E+R+ 
Sbjct: 408 TEQIMHRFEHGQGRVREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEKRMA 467

Query: 418 QY 419
            +
Sbjct: 468 DF 469


>gi|71402029|ref|XP_803973.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
           strain CL Brener]
 gi|70866690|gb|EAN82122.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 484

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/424 (63%), Positives = 323/424 (76%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G  ++ +  RG W     +L KG DW+I E+KASGLRGRGGAGF 
Sbjct: 23  LKDQDRIFLNLYNDFGTDITSAERRGDWYRTKDLLLKGHDWVIAEMKASGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPKV  D RP YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 83  SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+RGEF  E  S++ A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG  G+PRLKPPFPANVGLYGCPTTV N E+++V PTILRRG  W+S FGR+NN G 
Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNAETVSVSPTILRRGPQWFSSFGRKNNAGV 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVE+ MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE+ +GLGTAAVIVMD+STD+I AI R+S FY +ESCGQCTPCREG+ W+ 
Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKSTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M R V G A+K EI  + +VSK +EGRTICAL  AAAWP+QGL ++F P++EERI++Y
Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442

Query: 420 HRCN 423
              N
Sbjct: 443 WEAN 446


>gi|189191100|ref|XP_001931889.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973495|gb|EDU40994.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 500

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/419 (62%), Positives = 322/419 (76%), Gaps = 4/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +   G W    +IL KG +WII+E+KASGLRGRGGAGF 
Sbjct: 57  LKDQDRIFQNLYGHHGADLKSAQKYGDWYKTKEILLKGHEWIISEIKASGLRGRGGAGFP 116

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KW +       +P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A  A
Sbjct: 117 SGLKWDWDK---DSKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNATAA 173

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAY+CGEET+L+E
Sbjct: 174 YIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETSLIE 233

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+GTK
Sbjct: 234 SLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQGTK 293

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L++ISGHVN PC VEE MSI   +LIEKHCGG+RGGWDNL AVIPGGSS P LP      
Sbjct: 294 LYAISGHVNRPCVVEEEMSIPLRDLIEKHCGGVRGGWDNLKAVIPGGSSTPILPKHICDD 353

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK+  SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W  +
Sbjct: 354 QLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKWTHQ 413

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M+R  KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI  Y
Sbjct: 414 IMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIKDY 472


>gi|221105450|ref|XP_002162472.1| PREDICTED: similar to GF15407 [Hydra magnipapillata]
          Length = 470

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 265/425 (62%), Positives = 327/425 (76%), Gaps = 2/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D DRIFTNLYG     L  + +RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 40  LSDDDRIFTNLYGRHDWKLKGAQARGDWYKTKEIILKGHDWILNEIKTSGLRGRGGAGFP 99

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 100 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 159

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 160 YIYIRGEFYNEASNMQVAIQEAYKAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 219

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV P I RRG SW++  GR  N G K
Sbjct: 220 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPEICRRGGSWFASMGRPRNSGQK 279

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MSI   ELIE+H GG+ GGWDNLL +IPGGSS P +P      
Sbjct: 280 LFNISGHVNHPCTVEEEMSIPLKELIERHAGGVLGGWDNLLCIIPGGSSTPLIPKKVCED 339

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAA+IVM++ +D+++ I RL  FYKHESCGQCTPCREG GWM  
Sbjct: 340 VLMDFDDLIRAQTGLGTAAIIVMNKQSDVVRCIARLIEFYKHESCGQCTPCREGVGWMNN 399

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M+R V G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRPL+EER  QY 
Sbjct: 400 IMKRFVDGKAKSAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPLLEERFAQY- 458

Query: 421 RCNFQ 425
           + NF 
Sbjct: 459 QSNFN 463


>gi|156396709|ref|XP_001637535.1| predicted protein [Nematostella vectensis]
 gi|156224648|gb|EDO45472.1| predicted protein [Nematostella vectensis]
          Length = 477

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 258/419 (61%), Positives = 323/419 (77%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +I+ KG +WI+ E+  SGLRGRGGAGF 
Sbjct: 46  LKDEDRIFTNLYGRHDWKLKGAISRGDWYKTKEIILKGPEWILKEITTSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+IMR++PH LIEGC++A  ++GA  A
Sbjct: 106 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGASMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A++E Y  GL+G N+   G+D D+ +H GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEASNMQVAINEAYKKGLIGKNACGSGFDFDVYMHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG  W+SGFGR  N GTK
Sbjct: 226 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGEWFSGFGRPRNTGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MS+   +LIE+H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 286 LFNISGHVNNPCTVEEEMSVPLKDLIERHAGGVIGGWDNLLGVIPGGSSTPLIPLSVCDD 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAA+IV ++  D+IK I RL  FYKHESCGQCTPCREG  WM++
Sbjct: 346 VLMDFDALVQAQTGLGTAALIVFNKQADVIKGIARLIEFYKHESCGQCTPCREGCNWMLK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R  +G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI+++RP IE+R+ ++
Sbjct: 406 IMNRFTEGNAKTSEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHYRPEIEQRMKEF 464


>gi|68486372|ref|XP_712921.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida
           albicans SC5314]
 gi|68486437|ref|XP_712889.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida
           albicans SC5314]
 gi|46434308|gb|EAK93721.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida
           albicans SC5314]
 gi|46434343|gb|EAK93755.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida
           albicans SC5314]
 gi|238882235|gb|EEQ45873.1| NADH-quinone oxidoreductase chain F [Candida albicans WO-1]
          Length = 490

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/424 (62%), Positives = 326/424 (76%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 34  LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 93

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A  A+ A
Sbjct: 94  SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 153

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEETA
Sbjct: 154 TAAYIYIRGEFYNETVVLQNAINEAYKAGLIGKNACGSGYDFDIYIHRGMGAYICGEETA 213

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG  W++ FGRE N 
Sbjct: 214 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNA 273

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   EL+EKHCGGI GGWDNLL VIPGGSSVP +P   
Sbjct: 274 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIVGGWDNLLGVIPGGSSVPIMPKET 333

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W
Sbjct: 334 CDNVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 393

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R+M+R   G A ++EID ++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI 
Sbjct: 394 LQRMMDRFYTGQATEKEIDQIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 453

Query: 418 QYHR 421
           ++ +
Sbjct: 454 EFQQ 457


>gi|149245198|ref|XP_001527133.1| NADH-quinone oxidoreductase chain F 1 [Lodderomyces elongisporus
           NRRL YB-4239]
 gi|146449527|gb|EDK43783.1| NADH-quinone oxidoreductase chain F 1 [Lodderomyces elongisporus
           NRRL YB-4239]
          Length = 491

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 265/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 35  LKDQDRIFQNVYGNYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A  A+ A
Sbjct: 95  SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 154

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAY+CGEETA
Sbjct: 155 TAAYIYIRGEFYNETVILQNAINEAYKAGLIGKNACGSGYDFDIYIHRGMGAYVCGEETA 214

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG  W+   GRE N 
Sbjct: 215 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGEWFDSLGRERNS 274

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   EL+EKHCGGI+GGWDNLL VIPGGSSVP +P   
Sbjct: 275 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIKGGWDNLLGVIPGGSSVPVMPKET 334

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD L+++GSGLGTAAVIVM++ TDII+AI R + FYKHESCGQCTPCREGT W
Sbjct: 335 CDTVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFAHFYKHESCGQCTPCREGTTW 394

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R+M+R   G A +REID+++E++K IEG TICALGDAAAWPIQGLIK+F+P++ +RI+
Sbjct: 395 LQRMMDRFQTGQATEREIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFKPVMIDRIN 454

Query: 418 QYHR 421
           +Y +
Sbjct: 455 EYQK 458


>gi|320166203|gb|EFW43102.1| mitochondrial NADH:ubiquinone oxidoreductase NDUFV1/51 kDa subunit
           [Capsaspora owczarzaki ATCC 30864]
          Length = 480

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/421 (63%), Positives = 328/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     +  +++RG W    +IL KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 39  LKDSDRIFTNLYGRHDWGIKGALARGDWYKTKEILLKGHDWILNEVKKSGLRGRGGAGFP 98

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 99  SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 158

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 159 YIYIRGEFYNEASNMQVAIHEAYKAGFLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 218

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RR   W++ FGRE N+GTK
Sbjct: 219 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRTGEWFASFGRERNQGTK 278

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISG VN P TVEE MSI   ELIE+H GG+ GGWDNLLA+IPGG+SVP LP      
Sbjct: 279 LFCISGQVNTPVTVEEEMSIPLKELIERHAGGVIGGWDNLLAIIPGGASVPLLPRKICDD 338

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+++ SGLGTAAVIVM++ +D+I+ I RLS FYKHESCGQCTPCREG GW+ +
Sbjct: 339 VLMDFDALRDVTSGLGTAAVIVMNKQSDVIRCISRLSDFYKHESCGQCTPCREGVGWLAK 398

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M+R V G A+  EID++ E+++ IEG TICALGDAAAWP+QGLI++FRP IE RI  + 
Sbjct: 399 IMKRFVDGNAKPAEIDMIEELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIESRIATFQ 458

Query: 421 R 421
           +
Sbjct: 459 Q 459


>gi|157864056|ref|XP_001687575.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania major
           strain Friedlin]
 gi|68223786|emb|CAJ02018.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           major strain Friedlin]
          Length = 481

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/424 (62%), Positives = 327/424 (77%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY   G  +  +  RG W     IL KG DW+INE+KASGLRGRGGAGF 
Sbjct: 20  LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D RP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A  
Sbjct: 80  SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  S++ A+ E Y  G LG N+   G+D D+  + GAGAYICGEETA++
Sbjct: 140 GYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETAMI 199

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG  W++ FGR+ N GT
Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MS+   EL+E+H GG+RGGWDNLL VIPGGSS P +P     
Sbjct: 260 KLFCISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE  +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ 
Sbjct: 320 DILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+K EI  L++VSK +EGR+ICALG AAAWP+QGLI++F+PL+EERI+++
Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFKPLMEERIERF 439

Query: 420 HRCN 423
              N
Sbjct: 440 WEAN 443


>gi|50547327|ref|XP_501133.1| YALI0B20372p [Yarrowia lipolytica]
 gi|7684614|gb|AAF65194.2|AF197536_1 nucleotide-binding respiratory complex I subunit [Yarrowia
           lipolytica]
 gi|6689650|emb|CAB65520.1| NUBM protein [Yarrowia lipolytica]
 gi|49646999|emb|CAG83386.1| YALI0B20372p [Yarrowia lipolytica]
          Length = 488

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 262/423 (61%), Positives = 328/423 (77%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G  L+ +  +G W    +++ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 34  LKDQDRIFQNLYDNYGWDLASARKQGDWYKTKELILKGDTWIIDEIKKSGLRGRGGAGFP 93

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 94  SGLKWSFMNPPGWEKNEGPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLLAGRAMNA 153

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA+GL+G ++   GYD D+ +H G GAY+CGEET+
Sbjct: 154 TAAYIYIRGEFYNEAAVLQTAINEAYAAGLIGKDACGSGYDFDVYIHRGMGAYVCGEETS 213

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTILRRG  W++ FGRE N 
Sbjct: 214 LIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRERNS 273

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISG+VN PCTVEE MSI   EL+EKHCGGI+GGWDNLL VIPGG SVP LP   
Sbjct: 274 GTKLFCISGNVNEPCTVEEEMSIPLRELLEKHCGGIKGGWDNLLGVIPGGCSVPILPKNI 333

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK++ SGLGTAAVIV+++  D+I+AI R + FYKHESCGQCTPCREGT W
Sbjct: 334 CEDVLMDFDALKDVQSGLGTAAVIVINKQQDVIRAIQRFAAFYKHESCGQCTPCREGTTW 393

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +++ M+R   G A++REID+LYE++K+IEG TICALGDAAAWPIQGLI+NFRP +E R+ 
Sbjct: 394 LLKAMDRFRTGQAKEREIDMLYELTKDIEGHTICALGDAAAWPIQGLIRNFRPEMETRMK 453

Query: 418 QYH 420
           ++H
Sbjct: 454 KFH 456


>gi|146077013|ref|XP_001463061.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum
           JPCM5]
 gi|134067143|emb|CAM65408.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
           infantum JPCM5]
 gi|322496491|emb|CBZ31561.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 481

 Score =  561 bits (1446), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/424 (62%), Positives = 327/424 (77%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY   G  +  +  RG W     IL KG DW+INE+KASGLRGRGGAGF 
Sbjct: 20  LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D RP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A  
Sbjct: 80  SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  S++ A+ E Y  G LG N+   G++ D+  + GAGAYICGEETA++
Sbjct: 140 GYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWNFDLYTYRGAGAYICGEETAMI 199

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG  W++ FGR+ N GT
Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MS+   ELIE+H GG+RGGWDNLL VIPGGSS P +P     
Sbjct: 260 KLFCISGHVNRPCTVEEEMSMPLRELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE  +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ 
Sbjct: 320 NILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+K EI  L++VSK +EGR+ICALG AAAWP+QGLI++F+PL+EERI+++
Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFKPLMEERIERF 439

Query: 420 HRCN 423
              N
Sbjct: 440 WEAN 443


>gi|261327930|emb|CBH10907.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 496

 Score =  561 bits (1446), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/424 (62%), Positives = 322/424 (75%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G  +  +  RG W     +L KG DW+INE+KASGLRGRGGAGF 
Sbjct: 35  LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D RP Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 95  SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++  A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG  G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G 
Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVEE MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LKE  +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ 
Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+  E+  + +VSK +EGRTICAL  AAAWP+QGL ++F PL+EERI++Y
Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLEERIEKY 454

Query: 420 HRCN 423
              N
Sbjct: 455 WEAN 458


>gi|262277296|ref|ZP_06055089.1| NADH oxidoreductase (quinone), f subunit [alpha proteobacterium
           HIMB114]
 gi|262224399|gb|EEY74858.1| NADH oxidoreductase (quinone), f subunit [alpha proteobacterium
           HIMB114]
          Length = 427

 Score =  561 bits (1446), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 263/417 (63%), Positives = 328/417 (78%), Gaps = 2/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIF NLYG +  +LS++++RG W +  +I+ KG++WII++VK S LRGRGGAGF
Sbjct: 1   MLKDTDRIFRNLYGDESFNLSNALNRGDWKDTKEIIAKGKEWIIDQVKKSELRGRGGAGF 60

Query: 61  STGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSF PK   +DRPHYLV+NADESEPGTCKDRDI+R+EP  LIEG +IA++A+GA 
Sbjct: 61  PTGMKWSFAPKEPTADRPHYLVINADESEPGTCKDRDILRYEPQKLIEGSLIAAYAVGAK 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+RGE++ E + LQ A+DE Y   L+G N+   G+D D+ +H GAGAYICGEETAL
Sbjct: 121 TCYVYIRGEYVNEGKVLQQAIDEAYEKNLIGKNAAGSGWDFDMYIHFGAGAYICGEETAL 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG KGQPRLKPPFPA VGLYGCPT VNNVE+IAVVPTILRRG  W++ FGR  NRG
Sbjct: 181 LESLEGNKGQPRLKPPFPALVGLYGCPTIVNNVETIAVVPTILRRGPEWFASFGRPKNRG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISG+V  PC VEE MSI   ELIE H GG+ GGW NL AVIPGGSS+P LP    
Sbjct: 241 TKIFCISGNVVNPCNVEEEMSIPLKELIETHAGGVIGGWGNLQAVIPGGSSMPLLPKKVC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              +MD+D L E  SG+GTA ++V+D+S DI+  I R+S FYKHESCGQCTPCREG+GW+
Sbjct: 301 DNILMDFDALVEAKSGMGTAGIVVIDKSQDIVSCISRISRFYKHESCGQCTPCREGSGWL 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            R+MER+ +G A+  EID+L EV+K IEG TICA G+A+AWP+QGL+++FR  +EE+
Sbjct: 361 WRMMERINRGEAEIHEIDMLLEVTKQIEGHTICAFGEASAWPVQGLLRHFREQMEEK 417


>gi|322488209|emb|CBZ23455.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 481

 Score =  561 bits (1445), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/424 (62%), Positives = 328/424 (77%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY   G  +  +  RG W     IL KG DW+INE+KASGLRGRGGAGF 
Sbjct: 20  LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D RP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A  
Sbjct: 80  SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  +++ A+ E YA G LG ++   G+D D+  + GAGAYICGEETA++
Sbjct: 140 GYIYIRGEFYNEWRAVEKAIHEAYAKGYLGKSACGSGWDFDLYTYRGAGAYICGEETAMI 199

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG  W++ FGR+ N GT
Sbjct: 200 ASLEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PCTVEE MS+   ELIE+H GG+RGGWDNLL VIPGGSS P +P     
Sbjct: 260 KLYCISGHVNRPCTVEEEMSMPLRELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE  +GLGTAAVIVMD++TD+I AI RLS FY HESCGQCTPCREG+ W+ 
Sbjct: 320 DILMDYDALKEAQTGLGTAAVIVMDKTTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+K EI  L++VSK +EGR+ICALG AAAWP+QGLI++FRPL+EERI+++
Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFRPLMEERIERF 439

Query: 420 HRCN 423
              N
Sbjct: 440 WEAN 443


>gi|68171485|ref|ZP_00544869.1| NADH-quinone oxidoreductase, F subunit [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658598|ref|YP_507360.1| NADH dehydrogenase I subunit F [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999091|gb|EAM85758.1| NADH-quinone oxidoreductase, F subunit [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88600055|gb|ABD45524.1| NADH dehydrogenase I, F subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 427

 Score =  561 bits (1445), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/422 (63%), Positives = 324/422 (76%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D D++FTNL G     L  + SRG W N+ +IL  G + II E+K SGLRGRGGAGF
Sbjct: 1   MLKDSDKVFTNLSGQYSPFLRSAKSRGIWSNILEILNLGPEHIIQEIKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK   + +P YL++NADESEPGTCKDRDI+R++PH LIEG +IA FA+   
Sbjct: 61  STGLKWSFMPKTRKEGQPAYLIINADESEPGTCKDRDILRYDPHRLIEGILIAGFAMNVT 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEF  E   L  A++E Y + L+G N+   GYD+DI +H GAGAYICGEETA 
Sbjct: 121 TAYIYIRGEFYNEYLVLSKALEEAYKAKLIGKNACNSGYDLDIFIHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA V  I+RRG+ W++  GRENN G
Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATVSEIMRRGSDWFASLGRENNTG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP    
Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMKELIEKYAGGVRGGWDNLLAVIPGGSSVPMLPKSIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L+ + SGLGTA +IVMD+STD+I AI RLS FY HESCGQCTPCREGTGWM
Sbjct: 301 DTVNMDFDSLRAVQSGLGTAGLIVMDKSTDLIAAIERLSHFYMHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R+M+++VKG A    IDLL  ++  +EG TICALGDAAAWPIQGLI++FR +IE+RI  
Sbjct: 361 WRIMKKMVKGDATSESIDLLLNITHQVEGHTICALGDAAAWPIQGLIRHFRNVIEDRIRD 420

Query: 419 YH 420
           Y+
Sbjct: 421 YN 422


>gi|145488753|ref|XP_001430380.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397477|emb|CAK62982.1| unnamed protein product [Paramecium tetraurelia]
          Length = 462

 Score =  561 bits (1445), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 276/421 (65%), Positives = 328/421 (77%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN+Y      +  ++ RG W     IL  G+DWII+E+K SGLRGRGGAGF 
Sbjct: 23  LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+K+SFMPKV  D RP YLV+NADESEPGTCKDR+I+RH+PH L+EG +   FA+ A  
Sbjct: 83  SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY RGEF  E  +LQ AVDE Y  G LG N+   GYD D+ VH GAGAYICGEET L+
Sbjct: 143 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT
Sbjct: 203 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNL  +IPGGSSVP LP     
Sbjct: 263 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKETCE 322

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++
Sbjct: 323 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 382

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ER+  G A   EID L E++  IEG TICALGDAAAWP+QGLI+++R  IEERI+ Y
Sbjct: 383 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIRSYREEIEERIEDY 442

Query: 420 H 420
           H
Sbjct: 443 H 443


>gi|254693013|gb|ACT79356.1| MIP04331p [Drosophila melanogaster]
          Length = 704

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +M RG W    +I+ KG  WI+NE+K SGLRGRGGAGF 
Sbjct: 260 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 319

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA+  
Sbjct: 320 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 379

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+RGEF  E  +LQ A+ E Y +G LG N+   G+D D+ V  GAGAYICGEET+L+E
Sbjct: 380 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 439

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 440 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 499

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV  PCTVEE MS+   ELIE+H GG+ GGWDNLLA+IPGGSS PC+       
Sbjct: 500 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 559

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AI DYDGL  + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG  W+  
Sbjct: 560 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 619

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +M R V G AQ  EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI +
Sbjct: 620 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 677


>gi|45550452|ref|NP_611238.2| CG11423 [Drosophila melanogaster]
 gi|45445490|gb|AAF57825.3| CG11423 [Drosophila melanogaster]
          Length = 702

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +M RG W    +I+ KG  WI+NE+K SGLRGRGGAGF 
Sbjct: 258 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 317

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA+  
Sbjct: 318 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 377

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+RGEF  E  +LQ A+ E Y +G LG N+   G+D D+ V  GAGAYICGEET+L+E
Sbjct: 378 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 437

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 438 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 497

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV  PCTVEE MS+   ELIE+H GG+ GGWDNLLA+IPGGSS PC+       
Sbjct: 498 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 557

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AI DYDGL  + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG  W+  
Sbjct: 558 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 617

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +M R V G AQ  EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI +
Sbjct: 618 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 675


>gi|145498931|ref|XP_001435452.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402584|emb|CAK68055.1| unnamed protein product [Paramecium tetraurelia]
          Length = 462

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 276/421 (65%), Positives = 328/421 (77%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN+Y      +  ++ RG W     IL  G+DWII+E+K SGLRGRGGAGF 
Sbjct: 23  LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+K+SFMPKV  D RP YLV+NADESEPGTCKDR+I+RH+PH L+EG +   FA+ A  
Sbjct: 83  SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY RGEF  E  +LQ AVDE Y  G LG N+   GYD D+ VH GAGAYICGEET L+
Sbjct: 143 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT
Sbjct: 203 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNL  +IPGGSSVP LP     
Sbjct: 263 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKEVCE 322

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++
Sbjct: 323 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 382

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ER+  G A   EID L E++  IEG TICALGDAAAWP+QGLI+++R  IEERI+ Y
Sbjct: 383 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIRSYREEIEERIEDY 442

Query: 420 H 420
           H
Sbjct: 443 H 443


>gi|54650938|gb|AAV37047.1| AT08270p [Drosophila melanogaster]
          Length = 702

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +M RG W    +I+ KG  WI+NE+K SGLRGRGGAGF 
Sbjct: 258 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 317

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA+  
Sbjct: 318 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 377

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+RGEF  E  +LQ A+ E Y +G LG N+   G+D D+ V  GAGAYICGEET+L+E
Sbjct: 378 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 437

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 438 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 497

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV  PCTVEE MS+   ELIE+H GG+ GGWDNLLA+IPGGSS PC+       
Sbjct: 498 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 557

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AI DYDGL  + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG  W+  
Sbjct: 558 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 617

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +M R V G AQ  EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI +
Sbjct: 618 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 675


>gi|72388848|ref|XP_844719.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma brucei
           TREU927]
 gi|62176128|gb|AAX70246.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei]
 gi|70801253|gb|AAZ11160.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
          Length = 496

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/424 (62%), Positives = 322/424 (75%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G  +  +  RG W     +L KG DW+INE+KASGLRGRGGAGF 
Sbjct: 35  LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D RP Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 95  SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++  A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG  G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G 
Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVEE MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LKE  +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ 
Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+  E+  + +VSK +EGRTICAL  AAAWP+QGL ++F PL++ERI++Y
Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLQERIEKY 454

Query: 420 HRCN 423
              N
Sbjct: 455 WEAN 458


>gi|126135420|ref|XP_001384234.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor (Complex I-51KD) (CI-51KD) [Scheffersomyces
           stipitis CBS 6054]
 gi|126091432|gb|ABN66205.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor (Complex I-51KD) (CI-51KD) [Scheffersomyces
           stipitis CBS 6054]
          Length = 484

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/426 (61%), Positives = 327/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF N+YG  G  L  SM  G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 31  LKDTDRIFQNIYGKYGHDLKSSMKMGDWHKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A   + A
Sbjct: 91  SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRGMNA 150

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +G LG N+   GYD DI +H G GAY+CGEETA
Sbjct: 151 TAAYIYIRGEFYNEAVILQNAINEAYKAGFLGKNACGSGYDFDIYIHRGMGAYVCGEETA 210

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG  W++ FGRE N+
Sbjct: 211 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGDWFASFGRERNQ 270

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G KLF ISGHVN PCTVEE MSI   EL+EKHCGG++GGWDNLL VIPGGSSVP +    
Sbjct: 271 GVKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGSSVPIMTKET 330

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD L+++GSGLGTAAVIVM++ TDII+ I R S FYKHESCGQCTPCREGT W
Sbjct: 331 CDNILMDYDALRDVGSGLGTAAVIVMNKQTDIIRGIQRFSHFYKHESCGQCTPCREGTTW 390

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R+M+R  +G A ++EID+++E++K IEG TICALGDAAAWPIQGLIK+FRP++ +RI+
Sbjct: 391 LQRMMDRFQEGQATEKEIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPVMVDRIN 450

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 451 EFKKKN 456


>gi|188593015|emb|CAQ55523.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei TREU927]
          Length = 496

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/424 (62%), Positives = 322/424 (75%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G  +  +  RG W     +L KG DW+INE+KASGLRGRGGAGF 
Sbjct: 35  LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D RP Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 95  SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++  A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG  G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G 
Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVEE MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LKE  +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ 
Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+  E+  + +VSK +EGRTICAL  AAAWP+QGL ++F PL++ERI++Y
Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLQERIEKY 454

Query: 420 HRCN 423
              N
Sbjct: 455 WEAN 458


>gi|145538866|ref|XP_001455133.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422921|emb|CAK87736.1| unnamed protein product [Paramecium tetraurelia]
          Length = 463

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 276/421 (65%), Positives = 328/421 (77%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN+Y      +  ++ RG W     IL  G+DWII+E+K SGLRGRGGAGF 
Sbjct: 24  LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 83

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+K+SFMPKV  D RP YLV+NADESEPGTCKDR+I+RH+PH L+EG +   FA+ A  
Sbjct: 84  SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 143

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY RGEF  E  +LQ AVDE Y  G LG N+   GYD D+ VH GAGAYICGEET L+
Sbjct: 144 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 203

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT
Sbjct: 204 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 263

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNL  +IPGGSSVP LP     
Sbjct: 264 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKEVCE 323

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++
Sbjct: 324 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 383

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ER+  G A   EID L E++  IEG TICALGDAAAWP+QGLI+++R  IEERI+ Y
Sbjct: 384 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIRSYREEIEERIEDY 443

Query: 420 H 420
           H
Sbjct: 444 H 444


>gi|330813987|ref|YP_004358226.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487082|gb|AEA81487.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 430

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/424 (62%), Positives = 330/424 (77%), Gaps = 4/424 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D++RIF NLYG +  SL  +  RG W +  +I+ KG+DWII EVK S LRGRGGAGF
Sbjct: 1   MLEDKNRIFKNLYGDESFSLPAAEVRGDWKDTKEIISKGKDWIIEEVKKSELRGRGGAGF 60

Query: 61  STGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSF PK V   RPHYLV+NADESEPGTCKDRDI+R+EPH LIEGC+IA++A+ A+
Sbjct: 61  PTGVKWSFAPKEVKEGRPHYLVINADESEPGTCKDRDILRYEPHKLIEGCLIAAYAVSAN 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+RGE++ E + LQ A++E Y  G LG N+   G+D+DI +H+GAGAYICGEETAL
Sbjct: 121 ICYVYIRGEYVNEGKVLQEAINEAYEKGYLGKNAAGTGWDLDIFIHYGAGAYICGEETAL 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG KGQPRLKPPFPA +GLYGCPT VNNVE++AVVPTIL+RG+ W++ FGR  NRG
Sbjct: 181 LESLEGNKGQPRLKPPFPALIGLYGCPTIVNNVETVAVVPTILKRGSEWFASFGRVKNRG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISG+VN PC VEE M I    LIEKH GG+ GGWDNL AVIPGGSS+P LP    
Sbjct: 241 TKIFCISGNVNNPCNVEEEMGIPLKVLIEKHAGGVIGGWDNLQAVIPGGSSMPLLPKNIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L E  SGLGTA ++V+D+S DI+K + R++ FYKHESCGQCTPCREGTGWM
Sbjct: 301 ETINMDFDALIEAKSGLGTAGIVVIDKSQDIVKCMTRIARFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-- 416
            R++ER+ +G +   EID+L +V+K IEG TICA G+ ++WP+QGL+++FR  +E +   
Sbjct: 361 WRMLERIGRGESNISEIDMLMDVTKQIEGHTICAFGEGSSWPVQGLLRHFRKEMEAKCNS 420

Query: 417 DQYH 420
           DQYH
Sbjct: 421 DQYH 424


>gi|197105262|ref|YP_002130639.1| NADH dehydrogenase I, F subunit [Phenylobacterium zucineum HLK1]
 gi|196478682|gb|ACG78210.1| NADH dehydrogenase I, F subunit [Phenylobacterium zucineum HLK1]
          Length = 437

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 261/419 (62%), Positives = 325/419 (77%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIF NLYGL    L  + +RG W+    I+ +  +WI +++KASGLRGRGGAGF
Sbjct: 4   ILADKDRIFLNLYGLHDWGLEGAKARGAWNGTKDIVAQSPEWICDQIKASGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+FMPK  S+RPHYLVVNADESEPG CKDR+I+R++PH LIEGC+IA  AI AH 
Sbjct: 64  PTGLKWTFMPKQESERPHYLVVNADESEPGACKDREILRNDPHLLIEGCLIACRAIRAHT 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGE++ ERE L AA+ + Y + L+G  +  G+D D+ + HG GAYICG+ETAL+E
Sbjct: 124 AYIYIRGEYVHERERLTAAIQQAYDAKLIGPGNIHGWDCDVRIQHGGGAYICGDETALME 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  G++G PTT+NNVESI+VV TILRRGA W++GFG E + GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGAGIWGAPTTINNVESISVVGTILRRGADWFAGFGTEKSTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ SGHVN PC VE+++ I   +LIE+H GG+RGGW NL AVIPGG SV  +PA +   
Sbjct: 244 LFAASGHVNKPCVVEDAVGIPVRQLIEEHFGGVRGGWGNLKAVIPGGISVRMIPAHEAEE 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+M Y+ L+  GSGLGT  +IV D+  D++KAI R S FYKHESCGQCTPCREGTGWM R
Sbjct: 304 AVMTYEDLQARGSGLGTGTMIVFDKDADLVKAIARASYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+V G A+  EIDLL +V+  +EG TIC LGDAAAWPIQGL ++FR  +EERI  Y
Sbjct: 364 VMERMVTGEAEMSEIDLLLDVASQVEGHTICGLGDAAAWPIQGLFRHFRHEVEERITSY 422


>gi|51947511|gb|AAU14240.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus
           ovalis]
          Length = 474

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 256/420 (60%), Positives = 327/420 (77%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           ++DQDRIF+NLY  Q   ++ ++ RG W     IL   +D++I+E+K SGLRGRGGAGF 
Sbjct: 34  ISDQDRIFSNLYKDQDPFINGALKRGDWYRTKDILSCPQDFVIDEIKKSGLRGRGGAGFP 93

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+K+SFMPK    RP YLVVNADESEP TCKDR+IMRH+PH L+EG +I  +A+ A  A
Sbjct: 94  SGLKYSFMPKKSDGRPSYLVVNADESEPATCKDREIMRHDPHKLVEGALIVGYAMRAKAA 153

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++Y+RGEF  E + L+ AV E Y  G +G N+   GYD DI VH GAGAY+CGEET++L 
Sbjct: 154 YVYIRGEFWHEAQQLERAVAEAYEKGFIGKNACGSGYDFDIYVHRGAGAYVCGEETSMLS 213

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG  G+PR+KPP+PA  GLYGCPTTV NVE+++ VPTI+RRG SW++ FGR+NN GTK
Sbjct: 214 SIEGVVGKPRMKPPYPAGTGLYGCPTTVTNVETVSTVPTIMRRGGSWFASFGRKNNHGTK 273

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGH+N PCTVE+ MSI+  ELIE+H GG+RGGWDNLL VIPGGSS P +       
Sbjct: 274 LYSLSGHINNPCTVEDEMSISVRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCET 333

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D L E GS  GTA VIV+D+STD+I AI RLS FY HESCGQCTPCREGTGW++ 
Sbjct: 334 ALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLHESCGQCTPCREGTGWLVD 393

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+  G A   EID LYE++K IEG TICALG+AAAWP+QGLIK++RP++E+R+D+YH
Sbjct: 394 MLERMKIGKADYGEIDQLYELTKQIEGHTICALGEAAAWPVQGLIKHYRPVMEDRMDKYH 453


>gi|313238308|emb|CBY13392.1| unnamed protein product [Oikopleura dioica]
 gi|313246735|emb|CBY35608.1| unnamed protein product [Oikopleura dioica]
          Length = 458

 Score =  558 bits (1438), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/423 (63%), Positives = 320/423 (75%), Gaps = 3/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + DQDRIFTNLYG    S+  + +RG W    +IL KG DWI  E+K SGLRGRGGAGF 
Sbjct: 25  MKDQDRIFTNLYGFHDFSIKGAEARGDWYKTKEILLKGADWIQQEMKDSGLRGRGGAGFP 84

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG+KWSFM    +D RP YLVVNADE EPGTCKDRDIMRH+PH LIEGC++A +A+GA  
Sbjct: 85  TGLKWSFMNVPVTDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLIEGCLVAGYAMGATA 144

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IYVRGEF  E  +L  AV E YA+G LG N+   GYD D+ V  GAGAY+CGEETAL+
Sbjct: 145 AYIYVRGEFYNETSNLMYAVREAYAAGYLGQNACGTGYDFDVYVQRGAGAYVCGEETALI 204

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G+PRLKPPFPA +G +GCPTTVNNVE+IAV PTI RRGA W+S FGRE N GT
Sbjct: 205 ESLEGKQGKPRLKPPFPAAIGAFGCPTTVNNVETIAVAPTICRRGAEWFSSFGRERNTGT 264

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISG+VN PCTVEE+MSI   ELIEKH GG+RGGWDNLLAVIPGGSS P LP     
Sbjct: 265 KLFNISGNVNTPCTVEETMSIPMRELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPKHICD 324

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L    SGLGTAA+IVM++  D ++ IWRL  FYKHESCGQCTPCREG  WM 
Sbjct: 325 DIMMDFDALAAAPSGLGTAALIVMNKDDDPVECIWRLMEFYKHESCGQCTPCREGVSWMN 384

Query: 360 RVMERLVKGIAQ-KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +++R   G ++   EI+ L+E+SK +EG TICAL D AAWP QGLI+ F+P +EER  +
Sbjct: 385 DILKRWTFGQSRGPEEIEQLWEISKQVEGNTICALADGAAWPAQGLIRWFKPYLEERFAE 444

Query: 419 YHR 421
             R
Sbjct: 445 DVR 447


>gi|301111442|ref|XP_002904800.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor
           [Phytophthora infestans T30-4]
 gi|262095130|gb|EEY53182.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor
           [Phytophthora infestans T30-4]
          Length = 498

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/418 (63%), Positives = 318/418 (76%), Gaps = 2/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG     +  ++ RG W     +L  G DWI+ E+K SGLRGRGGAGF 
Sbjct: 40  LKDEDRIFTNVYGEDTWRVDGAVRRGDWHRTKDLLCMGPDWIVQEIKDSGLRGRGGAGFP 99

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP +LVVNADESEPGTCKDR+IMR +PH L+EGC+IA FA+ A  A
Sbjct: 100 SGLKWSFMPKQTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLIAGFAMRARAA 159

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++Y+RGEF  E   LQ A+ E Y  G LG N+   GYD D+ +H GAGAYICGEET LLE
Sbjct: 160 YVYIRGEFFNEALILQEAIHEAYQRGFLGRNACGSGYDFDVYLHRGAGAYICGEETGLLE 219

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG SW++  GR+NN GTK
Sbjct: 220 SLEGRQGKPRLKPPFPANTGLYGCPTTVTNVETVAVSPTILRRGGSWFASLGRKNNHGTK 279

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   +LIE+HCGG+RGGWDNL A IPGGSSVP L     + 
Sbjct: 280 LFCISGHVNNPCTVEEEMSIPLRDLIERHCGGVRGGWDNLQACIPGGSSVPVLDEELCQD 339

Query: 301 AIMDYDGLKEM-GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            +MDYD LK+  GSGLGTAAV + D+S D++ AI R S FY HESCGQCTPCREGTGWM 
Sbjct: 340 IMMDYDDLKQRGGSGLGTAAVTIFDKSVDMVGAIRRYSHFYTHESCGQCTPCREGTGWME 399

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +V+ R+  G A+  EI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+  + ERI+
Sbjct: 400 KVLTRMETGDAELEEIPMLEEISRQIEGHTICALGDAAAWPVQGLIRKFKHKLVERIE 457


>gi|71083587|ref|YP_266306.1| NADH dehydrogenase I subunit F [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062700|gb|AAZ21703.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 443

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 256/416 (61%), Positives = 321/416 (77%), Gaps = 1/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLY  +G  +  S +RG W +  +I++KGR+WII EVK+S LRGRGGAGF
Sbjct: 1   MLNDKDRIFQNLYNDKGSDVESSKNRGDWVDTAEIIKKGREWIIEEVKSSELRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSF PK    RPHYLV+N DESEPGTCKDRDI+R EPH LIEGC+IAS+A+ AH 
Sbjct: 61  PTGLKWSFAPKELGSRPHYLVINGDESEPGTCKDRDILRFEPHKLIEGCLIASYAVQAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+  + + LQ A+DE Y   L+G N S  G+D+DI +H+GAGAYICGEETALL
Sbjct: 121 CYIYIRGEYFIDGQKLQKAIDEAYEKKLIGKNASGTGWDLDIYIHYGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILR+G  W++  G+  N GT
Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRKGGKWFASLGKAKNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISG+VN PC VEE MSI+  ELIE H GG+ GGWDNL AVIPGGSS+P +P     
Sbjct: 241 KIFCISGNVNKPCNVEEEMSISLKELIEVHAGGVIGGWDNLQAVIPGGSSMPIIPKKTCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L    SGLGTA ++V++   DIIK + R++ FYKHESCGQCTPCREG+GWM 
Sbjct: 301 TLTMDFDSLVAEKSGLGTAGIVVINNDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R++ER+ KG A K E+++L +V+  I G TICA G+ ++WP+QGL+++FR  IEER
Sbjct: 361 RMLERMAKGEASKDEVEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFRKEIEER 416


>gi|51947519|gb|AAU14244.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Euplotes sp.
           BB-2004]
          Length = 470

 Score =  555 bits (1430), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 266/423 (62%), Positives = 321/423 (75%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY      +  ++ RG W     I+  G DWII+++KASGLRGRGGAGF 
Sbjct: 32  LQDQDRIFTNLYRDGDPFIDGALKRGDWHKTKDIVLNGDDWIIDQIKASGLRGRGGAGFP 91

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+K+SFMPKV   RP YLV+NADESEPGTCKDR+IMRH+PH LIEG +    ++ A  A
Sbjct: 92  SGLKYSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLIEGALCVGVSMRAKAA 151

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  +   L+ A+ E Y  GL+G N+   GYD D+ V HGAGAYICGEET L+E
Sbjct: 152 YIYIRGEFWYQYNCLERAISEAYERGLIGKNACGTGYDFDVHVVHGAGAYICGEETGLIE 211

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PR+KPPFPAN GLYGCPTTV NVE++AV PTILRR   W++ FGR+NN GTK
Sbjct: 212 SLEGKQGKPRMKPPFPANAGLYGCPTTVTNVETVAVCPTILRRTPEWFASFGRKNNAGTK 271

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF++SGHVN P   EE MSI   ELIEKHCGG+ GGWDNL A+IPGGSSVP LP      
Sbjct: 272 LFAVSGHVNNPGVFEEEMSIPLRELIEKHCGGVTGGWDNLKAIIPGGSSVPLLPKRICDD 331

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+++ SGLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREGT WM  
Sbjct: 332 VLMDFDALRDVRSGLGTAAVIVMDKSTDVIAAIHRLSKFYAHESCGQCTPCREGTSWMED 391

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ KG A   EID+L E+S  IEG TICALGDAAAWP+QGLI++FR  +E+RI+ Y 
Sbjct: 392 MLGRMRKGNADFAEIDMLEELSYQIEGHTICALGDAAAWPVQGLIRHFRHEMEDRIEDYK 451

Query: 421 RCN 423
             N
Sbjct: 452 AEN 454


>gi|325187212|emb|CCA21752.1| ubiquinone oxidoreductase putative [Albugo laibachii Nc14]
          Length = 502

 Score =  555 bits (1429), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 267/418 (63%), Positives = 318/418 (76%), Gaps = 2/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG +   +  ++ RG W     +L  G +WII EVK SGLRGRGGAGF 
Sbjct: 45  LKDEDRIFTNLYGEKTWRIDGALKRGDWYRTKDLLCMGPEWIIQEVKDSGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP +LVVNADESEPGTCKDR+IMR +PH L+EGC++A FA+ A  A
Sbjct: 105 SGLKWSFMPKQTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLVAGFAMRARAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   L+ A+ E Y  G LG NS   GYD D+ +H GAGAYICGEET+LLE
Sbjct: 165 YIYIRGEFFNEAVILEEAIHEAYQKGFLGVNSCGSGYDFDVYLHRGAGAYICGEETSLLE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG SW++  GR+NN GTK
Sbjct: 225 SLEGKQGKPRLKPPFPANTGLYGCPTTVTNVETVAVSPTILRRGGSWFASLGRKNNSGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   +LIEKHCGG+RGGW NL A IPGGSSVP L     + 
Sbjct: 285 LFCISGHVNNPCTVEEEMSIPLKDLIEKHCGGVRGGWGNLQACIPGGSSVPVLDEELCQD 344

Query: 301 AIMDYDGLKEM-GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            +MD+D LK   GSGLGTAAV + D+S D++ AI RL+ FY HESCGQCTPCREGTGWM 
Sbjct: 345 IMMDFDDLKNRGGSGLGTAAVTIFDKSVDMVAAIRRLAHFYTHESCGQCTPCREGTGWME 404

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            ++ ++ KG A   EI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+  I ERI+
Sbjct: 405 AILVKMEKGEADLEEIPMLEEISRQIEGHTICALGDAAAWPVQGLIRKFKHKIIERIE 462


>gi|256072407|ref|XP_002572527.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238657687|emb|CAZ28759.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1), putative
           [Schistosoma mansoni]
          Length = 413

 Score =  554 bits (1428), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 257/397 (64%), Positives = 313/397 (78%), Gaps = 1/397 (0%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           M RGHW    +I+ KG DWII E+K SGLRGRGGAGF +GMKWSFM K    RP YLV+N
Sbjct: 1   MQRGHWYKTKEIVLKGSDWIIEEIKKSGLRGRGGAGFPSGMKWSFMNKPSDGRPKYLVIN 60

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADE EPGTCKDR+IMRH+PHTLIEGC+IA  A+GA+ A+IY+RGEF  E  ++Q A+ E 
Sbjct: 61  ADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANAAYIYIRGEFYNEASNMQLAIKEA 120

Query: 144 YASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
           Y +G LG N+   G++ D+ +H GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA++GL+
Sbjct: 121 YEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADIGLF 180

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTKLF+ISGHVN PCTVEE MSI  
Sbjct: 181 GCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTKLFNISGHVNNPCTVEEEMSIPM 240

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            +LIE+H GG+ GGWDNLLAVIPGGSS P LP       +MD+D L +  SGLGTAA+IV
Sbjct: 241 RDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICSTVLMDFDALVQANSGLGTAALIV 300

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           M+RS D++  I RL  FY+HESCGQCTPCREG  W+ ++M R VKG A K EID+++E+S
Sbjct: 301 MNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWLSQIMTRFVKGNANKDEIDMIWEIS 360

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           K +EGRTICAL D AAWP+QGLI++FRP +E R  +Y
Sbjct: 361 KQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKY 397


>gi|91761992|ref|ZP_01263957.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717794|gb|EAS84444.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 443

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 254/416 (61%), Positives = 320/416 (76%), Gaps = 1/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLY  +G  +  S +RG W +  +I++KGR+WII EVK+S LRGRGGAGF
Sbjct: 1   MLNDKDRIFQNLYNDKGSDVESSKNRGDWVDTAEIIKKGREWIIEEVKSSELRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSF PK    RPHYLV+N DESEPGTCKDRDI+R EP  LIEGC+IAS+A+ AH 
Sbjct: 61  PTGLKWSFAPKELGSRPHYLVINGDESEPGTCKDRDILRFEPQKLIEGCLIASYAVQAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+  + + LQ A+DE Y   L+G N S  G+D+DI +H+GAGAYICGEETALL
Sbjct: 121 CYIYIRGEYFIDGQKLQKAIDEAYEKKLIGKNASGTGWDLDIYIHYGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILR+G  W++  G+  N GT
Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRKGGKWFASLGKAKNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISG+VN PC VEE MSI+  ELIE H GG+ GGWDNL AVIPGGSS+P +P     
Sbjct: 241 KIFCISGNVNKPCNVEEEMSISLKELIEVHAGGVIGGWDNLQAVIPGGSSMPIIPKKTCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L    SGLGTA ++V++   DIIK + R++ FYKHESCGQCTPCREG+GWM 
Sbjct: 301 TLTMDFDSLVAEKSGLGTAGIVVINNDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R++ER+ KG A K E+++L +V+  I G TICA G+ ++WP+QGL+++FR  IE+R
Sbjct: 361 RMLERMAKGEASKDEVEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFRKEIEKR 416


>gi|54792418|emb|CAH65683.1| NADH-quinone oxidoreductase [Nilaparvata lugens]
          Length = 462

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 260/416 (62%), Positives = 315/416 (75%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  ++ RG W    +I+ KG D+IINEVKASGLRGRGGAGF 
Sbjct: 43  LNDSDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADFIINEVKASGLRGRGGAGFP 102

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YL VNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 103 SGLKWSFMNKPSDGRPKYLCVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 162

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   G+D D+ +H GAGAYICGEETAL+E
Sbjct: 163 YIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGTGFDFDVYMHRGAGAYICGEETALIE 222

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 223 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNTGTK 282

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MS+   ELIE+H GG+RGGWDNLLAVIPGGSS P +P      
Sbjct: 283 LFNISGHVNRPCTVEEEMSVPLRELIERHAGGVRGGWDNLLAVIPGGSSTPLIPKRVCDD 342

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +  GTAAVIVMD+STDIIKAI RL VFYKHESCGQCTPCREG  WM +
Sbjct: 343 VLMDFDALIAAETSFGTAAVIVMDKSTDIIKAIARLIVFYKHESCGQCTPCREGIAWMHK 402

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +M+R VKG A+  EID+L+E+SK +             WP+QGLI++FRP IE R+
Sbjct: 403 MMQRFVKGDARPAEIDMLWEISKRLRDTLFARWVTGLRWPVQGLIRHFRPEIENRM 458


>gi|51947517|gb|AAU14243.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus
           ovalis]
          Length = 475

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 255/420 (60%), Positives = 321/420 (76%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           ++DQDRIF+NLY  Q   +  ++ RG W     IL    D++I+E+K SGLRGRGGAGF 
Sbjct: 35  ISDQDRIFSNLYKDQDPFIDGALKRGDWYRTKDILACPHDFVIDEIKKSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+K+SFMPK    RP +LVVNADESEP TCKDR+IMRH+PH L+EG +I  +A+ A  A
Sbjct: 95  SGLKYSFMPKKSDGRPSFLVVNADESEPATCKDREIMRHDPHKLVEGALIVGYAMRARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++Y+RGEF  E   L+ AV E Y  G +G N+   GYD DI VH GAGAYICGEET++L 
Sbjct: 155 YVYIRGEFWDEAMQLERAVAEAYEKGFIGKNACGSGYDFDIYVHRGAGAYICGEETSMLS 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG  G+PR+KPP+PA  GLYGCPTTV NVE+++ VPTI+RRG  W++ FGR+NN GTK
Sbjct: 215 SIEGVIGKPRMKPPYPAGTGLYGCPTTVTNVETVSTVPTIMRRGGGWFASFGRKNNHGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ +SGH+N PCTVE+ MSI+  ELIE+H GG+RGGWDNLL VIPGGSS P +       
Sbjct: 275 LYCLSGHINNPCTVEDEMSISLRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D L E GS  GTA VIV+D+STD+I AI RLS FY HESCGQCTPCREGTGW++ 
Sbjct: 335 ALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLHESCGQCTPCREGTGWLVD 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+  G A   EID LYE++K IEG TICALG+AAAWP+QGLIK++R +IE+RID+YH
Sbjct: 395 ILERMKIGKADYGEIDQLYELTKQIEGHTICALGEAAAWPVQGLIKHYRDVIEDRIDKYH 454


>gi|312371261|gb|EFR19494.1| hypothetical protein AND_22330 [Anopheles darlingi]
          Length = 1009

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 255/386 (66%), Positives = 302/386 (78%), Gaps = 1/386 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 61  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWILNEIKVSGLRGRGGAGFP 120

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 121 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGKAMGARAA 180

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 181 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 240

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG  W++GFGR  N GTK
Sbjct: 241 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFAGFGRTRNSGTK 300

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GGIRGGWDNLL +IPGGSS P +P      
Sbjct: 301 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGIRGGWDNLLGIIPGGSSTPVIPKSVCED 360

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  + LGTAA+IVMD+STDIIKAI RL +FYKHESCGQCTPCREG  WM +
Sbjct: 361 VLMDFDGLVQAQTSLGTAAIIVMDKSTDIIKAISRLIMFYKHESCGQCTPCREGIAWMNK 420

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIE 386
           +M R V G A+  EID+L+E+SK IE
Sbjct: 421 IMHRFVAGNARPSEIDMLWEISKQIE 446


>gi|56416878|ref|YP_153952.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. St.
           Maries]
 gi|222475243|ref|YP_002563659.1| NADH dehydrogenase I chain F (nuoF) [Anaplasma marginale str.
           Florida]
 gi|255003227|ref|ZP_05278191.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. Puerto
           Rico]
 gi|56388110|gb|AAV86697.1| NADH dehydrogenase chain F [Anaplasma marginale str. St. Maries]
 gi|222419380|gb|ACM49403.1| NADH dehydrogenase I chain F (nuoF) [Anaplasma marginale str.
           Florida]
          Length = 430

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/417 (63%), Positives = 317/417 (76%), Gaps = 2/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           +  +D  FTNL G +   L  +  RG WD   +ILE G D II EVK SGLRGRGGAGF 
Sbjct: 1   MKSEDAAFTNLAGRESPYLGAAKKRGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG KWSFMPK   + RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G   
Sbjct: 61  TGTKWSFMPKTRPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L  A+DE Y  GL+G N+   GYD+DI +H GAGAYICGEE+A L
Sbjct: 121 AYIYIRGEFYNEYLVLSQALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG+KG PRLKPPFPA VGLYGCPTT+NNVE++AVV  I+RRG+ W+S  GR NN GT
Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTINNVETVAVVADIMRRGSKWFSSLGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKSVCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+M+++V G A+  EID L +V+  IEG TICAL DAA WPIQGL ++FR ++E+RI
Sbjct: 361 RMMKKMVDGTAKDGEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRI 417


>gi|190571396|ref|YP_001975754.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018795|ref|ZP_03334603.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357668|emb|CAQ55112.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995746|gb|EEB56386.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 417

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 265/417 (63%), Positives = 320/417 (76%), Gaps = 3/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IF NL G +   L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEQDKIFINLNGKETPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK  +    YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A  AI A  
Sbjct: 61  STGLKWSFMPK--NPLKAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGRAISASV 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I+  ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P     
Sbjct: 239 KVFCISGHVNNPCNVEEELGISLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 TIEMDFDSLRAAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+M R+V G  +  E+D L +++  IEG TICALGDAAAWP+QGLI++FR +IEERI
Sbjct: 359 RIMRRMVAGNIKPGEVDKLLDLTTQIEGHTICALGDAAAWPVQGLIRHFRHIIEERI 415


>gi|225630643|ref|YP_002727434.1| NADH dehydrogenase I, F subunit [Wolbachia sp. wRi]
 gi|225592624|gb|ACN95643.1| NADH dehydrogenase I, F subunit [Wolbachia sp. wRi]
          Length = 417

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IFTNL G +   L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEQDKIFTNLNGKETPLLEGAKKRGGWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A  
Sbjct: 61  STGLKWSFMPKNLPK--AYLVVNADESEPGTCKDRDILRYEPHKLLEGILLASRAISASV 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFTSLGKPNNTGT 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSAPLIPKSICD 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R+M+R+V G  +  EID L +++  IEG TICALGDAAAWPIQGLI++FR +I+ER
Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414


>gi|42520789|ref|NP_966704.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410529|gb|AAS14638.1| NADH dehydrogenase I, F subunit, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 417

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IFTNL G     L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A  AI A  
Sbjct: 61  STGLKWSFMPKNLPK--AYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P     
Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVM++STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMNKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R+M+R+V G  +  EID L +++  IEG TICALGDAAAWPIQGLI++FR +I+ER
Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414


>gi|269958707|ref|YP_003328494.1| NADH dehydrogenase subunit F [Anaplasma centrale str. Israel]
 gi|269848536|gb|ACZ49180.1| NADH dehydrogenase subunit F [Anaplasma centrale str. Israel]
          Length = 430

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/417 (62%), Positives = 319/417 (76%), Gaps = 2/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           +  +D +FTNL G +   L  + +RG WD   +ILE G D II EVK SGLRGRGGAGF 
Sbjct: 1   MKSEDAVFTNLAGRECPYLEAARARGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG+KW FMPK   + RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G   
Sbjct: 61  TGVKWGFMPKARPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A++Y+RGEF  E   L  A+DE Y  GL+G N+   GYD+DI +H GAGAYICGEE+A L
Sbjct: 121 AYVYIRGEFYNEYLVLSRALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG+KG PRLKPPFPA VGLYGCPTTVNN+E++AVV  I+RRG+ W++  G+ NN GT
Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTVNNIETVAVVGDIMRRGSQWFASLGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVVGGWDNLLAVIPGGSSVPMLPKSICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+M+++V G A+  EID L +V+  IEG TICAL DAA WPIQGL ++FR ++E+RI
Sbjct: 361 RMMKKMVDGTAKDGEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRI 417


>gi|58584731|ref|YP_198304.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419047|gb|AAW71062.1| NADH:ubiquinone oxidoreductase, NADH-binding, chain F [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 424

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/416 (63%), Positives = 322/416 (77%), Gaps = 2/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + +QD+IFTNL G +   L  +  RG W    ++L+ G + II+EV+ SGLRGRGGAGFS
Sbjct: 1   MKEQDKIFTNLSGKETPLLKGAKKRGSWQKTKELLDLGSEKIIDEVRKSGLRGRGGAGFS 60

Query: 62  TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG+KWSFMPK  S ++P YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A  
Sbjct: 61  TGLKWSFMPKNPSKEQPTYLVVNADESEPGTCKDRDILRYEPHKLLEGVLLASRAISASV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y  GL+G N+ K  YD+++ +H GAGAYICGEETA L
Sbjct: 121 AYIYIRGEFYNEYLVLKQALEEAYKEGLIGKNACKSSYDLNVFIHRGAGAYICGEETAQL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 181 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILYRGGEWFASLGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F +SGHVN PC VEE + I   ELIE++ GG+RGGWDNLLAVIPGGSSV  +P     
Sbjct: 241 KIFCVSGHVNNPCNVEEELGIPLRELIEEYAGGVRGGWDNLLAVIPGGSSVSLIPKSICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 301 IIKMDFDSLRAAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R+M+R+V G  +  EID L +++  IEG TICALGDAAAWPIQGLI++FR +IEER
Sbjct: 361 RIMKRMVTGNIKHGEIDKLLDLTTQIEGNTICALGDAAAWPIQGLIRHFRHVIEER 416


>gi|99035131|ref|ZP_01314914.1| hypothetical protein Wendoof_01000244 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 417

 Score =  545 bits (1404), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IFTNL G     L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A  AI A  
Sbjct: 61  STGLKWSFMPKNLPK--AYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFLHRGAGAYICGEETAQL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P     
Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVM++STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMNKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R+M+R+V G  +  EID L +++  IEG TICALGDAAAWPIQGLI++FR +I+ER
Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414


>gi|225631349|ref|ZP_03788019.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590954|gb|EEH12166.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 417

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 265/416 (63%), Positives = 317/416 (76%), Gaps = 3/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IFTNL G     L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A  AI A  
Sbjct: 61  STGLKWSFMPKNLPK--AYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P     
Sbjct: 239 KIFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R+M+R+V G  +  EID L +++  IEG TICALGDAAAWPIQG I++FR +I+ER
Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGFIRHFRHVIKER 414


>gi|307110580|gb|EFN58816.1| hypothetical protein CHLNCDRAFT_56910 [Chlorella variabilis]
          Length = 949

 Score =  542 bits (1396), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/441 (60%), Positives = 316/441 (71%), Gaps = 18/441 (4%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +  RG W     ++ KG +WII+EVKASG+RGRGGAGFS
Sbjct: 482 LQDSDRIFTNLYGRHDPFLEGAQKRGDWYRTADLIGKGPEWIISEVKASGIRGRGGAGFS 541

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMPK   DRPHYLVVN DE EPGT KDR+IMRH+PH L+EG ++A  A  A  A
Sbjct: 542 TGLKWSFMPKNF-DRPHYLVVNGDEGEPGTSKDREIMRHDPHKLLEGILLAGVATRAQAA 600

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+   R SL+ A+ E Y +G LG N+   G D  +    GAGAY+CGEETALLE
Sbjct: 601 YIYIRGEYRNYRHSLERAIGEAYQAGYLGKNACGSGMDFHVYTQQGAGAYVCGEETALLE 660

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPP+PAN GLYGCPTT+NNVE+IA +P ILRRG+SWYS  GR NN GTK
Sbjct: 661 SLEGKQGRPRLKPPYPANAGLYGCPTTINNVETIASIPAILRRGSSWYSSLGRRNNTGTK 720

Query: 241 LFSISGHVNYPCTV--------------EESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
           LFSI       C                +E  S    ELIEKH GG+RGGWDNLLAVIPG
Sbjct: 721 LFSIRHATASQCPRGCRPRQPPVHGGGGDEHTSQARQELIEKHAGGVRGGWDNLLAVIPG 780

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           GSSVP +P       +MDYD L+E G+  GT AVIVMD+STDI++AI RLS FYKHESCG
Sbjct: 781 GSSVPLVPQSVASEVLMDYDSLQEAGTYFGTGAVIVMDKSTDIVEAIRRLSWFYKHESCG 840

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           QCTPCREG+GW+  ++ R+  G A  +EID+   +SK IEG TICALGDAAAWP+QGLI+
Sbjct: 841 QCTPCREGSGWLWDILTRIQTGEADVKEIDMAISISKIIEGHTICALGDAAAWPVQGLIR 900

Query: 407 NFRPLIEERI--DQYHRCNFQ 425
           +FRPL+EERI   Q  R N Q
Sbjct: 901 HFRPLVEERIRERQAARANNQ 921


>gi|255004355|ref|ZP_05279156.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. Virginia]
          Length = 430

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/417 (62%), Positives = 315/417 (75%), Gaps = 2/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           +  +D  FTNL G +   L  +  RG WD   +ILE G D II EVK SGLRGRGGAGF 
Sbjct: 1   MKSEDAAFTNLAGRESPYLGAAKKRGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG KWSFMPK   + RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G   
Sbjct: 61  TGTKWSFMPKTRPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L  A+DE Y  GL+G N+   GYD+DI +H GAGAYICGEE+A L
Sbjct: 121 AYIYIRGEFYNEYLVLSQALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG+KG PRLKPPFPA VGLYGCPTT+NNVE++AVV  I+RRG+ W+S  GR NN GT
Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTINNVETVAVVADIMRRGSKWFSSLGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKSVCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+M++  +   ++ EID L +V+  IEG TICAL DAA WPIQGL ++FR ++E+RI
Sbjct: 361 RMMKKNGRWNGKRWEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRI 417


>gi|316978440|gb|EFV61427.1| putative NADH oxidoreductase, F subunit [Trichinella spiralis]
          Length = 709

 Score =  538 bits (1387), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/427 (61%), Positives = 318/427 (74%), Gaps = 22/427 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+  SGLRGRGGAGF 
Sbjct: 281 LKDEDRIFTNLYGRHDWKLKGALSRGDWYKTKEILLKGEDWIVKEITKSGLRGRGGAGFP 340

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 341 AGLKWSFMNKPYDGRPRYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 400

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+R                   +GL+G N+   GYD D+ VH GAGAYICGEETALLE
Sbjct: 401 YIYIR-------------------AGLIGRNACGTGYDFDVFVHRGAGAYICGEETALLE 441

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK
Sbjct: 442 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVSPTICRRGGSWFASFGRERNHGTK 501

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV+ PCTVEE MSI   ELIE+H GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 502 LFCISGHVHTPCTVEEEMSIPLKELIERHGGGVIGGWDNLLAVIPGGSSTPVIPKQICND 561

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L E  +GLGTAAVIVM++ TDI+KAI RLS+FYKHESCGQCTPCREG  W+ +
Sbjct: 562 VLMDFDALIEAKTGLGTAAVIVMNKQTDIVKAIARLSLFYKHESCGQCTPCREGCSWLNK 621

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G +   E+D+++E+SK +EG TICAL DAAAWP+QGL+++FRP +E R+ ++ 
Sbjct: 622 MMWRFVDGNSVPEELDMIWELSKQLEGHTICALADAAAWPVQGLVRHFRPELEARMKKFE 681

Query: 421 --RCNFQ 425
             R N Q
Sbjct: 682 TLRKNIQ 688


>gi|226470474|emb|CAX70517.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma
           japonicum]
          Length = 432

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 252/390 (64%), Positives = 305/390 (78%), Gaps = 1/390 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M RGHW    +I+ KG DWII E+K SGLRGRGGAGF 
Sbjct: 41  LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 100

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA  A+GA+ A
Sbjct: 101 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 160

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   G++ D+ +H GAGAYICGEETAL+E
Sbjct: 161 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 220

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 221 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 280

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG+ GGWDNLLAVIPGGSS P LP      
Sbjct: 281 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 340

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAA+IVM+RS D++  I RL  FY+HESCGQCTPCREG  WM +
Sbjct: 341 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 400

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
           +M R VKG A K EID+++E+SK +EGRTI
Sbjct: 401 IMSRFVKGNANKSEIDMIWEISKQMEGRTI 430


>gi|88607132|ref|YP_505037.1| NADH dehydrogenase I subunit F [Anaplasma phagocytophilum HZ]
 gi|88598195|gb|ABD43665.1| NADH dehydrogenase I, F subunit [Anaplasma phagocytophilum HZ]
          Length = 426

 Score =  534 bits (1376), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 258/417 (61%), Positives = 316/417 (75%), Gaps = 2/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + D+D IFTNL G +   L+ + SRG W N  ++L  GRD II E+K SGLRGRGGAGF 
Sbjct: 1   MRDEDSIFTNLSGKESPYLAAAKSRGTWFNTKELLALGRDKIIQEIKDSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG+KWSFMPK   +    YLVVNADESEPGTCKDRDI+R++PH ++EG +IA FA+G   
Sbjct: 61  TGLKWSFMPKALPEGSSAYLVVNADESEPGTCKDRDIIRYDPHKILEGILIAGFAMGVTA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L  A+ E YA GLLG N+   GY++++ +H GAGAYICGEE+A +
Sbjct: 121 AYIYIRGEFYNEYTVLFKALQEAYADGLLGENACGSGYNLNVFIHRGAGAYICGEESAQI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EG+KG PRLKPPFPA VGLYG PTTVNNVE+IAVV  ILRRG+ W+S  G  NN GT
Sbjct: 181 ESIEGRKGMPRLKPPFPAAVGLYGSPTTVNNVETIAVVGDILRRGSGWFSSLGIPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KVFCISGHVNNPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKHICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTA +IVMD+STD+I+AI R+S FY HESCGQC+PCREGTGWM 
Sbjct: 301 DITMDFDSLRAAKSGLGTAGLIVMDKSTDLIEAIERISSFYMHESCGQCSPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+M +++ G A++ EID L +V+  IEG TICAL DAA WPIQGL ++FR ++EER+
Sbjct: 361 RMMRKMLDGTAEESEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRSVVEERL 417


>gi|320581561|gb|EFW95781.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor
           [Pichia angusta DL-1]
          Length = 488

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/433 (58%), Positives = 320/433 (73%), Gaps = 11/433 (2%)

Query: 2   LTDQDRIFTNLY-------GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRG 54
           L DQDRIF NLY       G     L  +M  G W    +IL KG  WII+E+KASGLRG
Sbjct: 20  LADQDRIFQNLYLGNSKKHGTPSYDLKTAMKIGDWYKTKEILLKGDTWIIDEIKASGLRG 79

Query: 55  RGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           RGGAGF +G+KWSFM     ++   P YLVVNADE EPGTCKDR+IMR EPH L+EGC++
Sbjct: 80  RGGAGFPSGLKWSFMNPPGWNKNVGPRYLVVNADEGEPGTCKDREIMRKEPHKLVEGCLV 139

Query: 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAY 170
           A  A+ A  A+IY+RGEF  E  +LQ A+++ Y +G LG ++   G+  D+ +H G GAY
Sbjct: 140 AGRAMNATAAYIYIRGEFYNEAVTLQNAINQAYEAGFLGPDACGSGFAFDVYIHRGMGAY 199

Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230
           +CGEETAL+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG  W+S 
Sbjct: 200 VCGEETALIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTICRRGGKWFSS 259

Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
           FGRE N GTKLF ISG+VN PCTVEE MSI+  ELI+KHCGG++GGWDNLLAVIPGGSS 
Sbjct: 260 FGRERNSGTKLFCISGNVNEPCTVEEEMSISMRELIDKHCGGVKGGWDNLLAVIPGGSST 319

Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
           P L        +MDYD L++ GSGLGTAAVIV ++  D+++ I RL  FYKHESCGQCTP
Sbjct: 320 PILNKETCDDILMDYDALRDAGSGLGTAAVIVFNKQADVLRGIQRLLAFYKHESCGQCTP 379

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
           CREG+ ++ ++M+R   G AQ++EID   E++K +EG +ICA+G+A +WP QGL+KNF+P
Sbjct: 380 CREGSTYLSKMMDRFYVGQAQEKEIDKALELTKKVEGHSICAMGEAFSWPYQGLVKNFKP 439

Query: 411 LIEERIDQYHRCN 423
           L+ ERI +Y R N
Sbjct: 440 LMIERIREYKRQN 452


>gi|154287522|ref|XP_001544556.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150408197|gb|EDN03738.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 419

 Score =  532 bits (1370), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/383 (65%), Positives = 305/383 (79%), Gaps = 4/383 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMR 99
           II+E+KASGLRGRGGAGF +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR
Sbjct: 10  IISEIKASGLRGRGGAGFPSGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMR 69

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYD 158
            +PH LIEGC++A  A+ A  A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD
Sbjct: 70  KDPHKLIEGCLVAGRAMNATAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYD 129

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+ +H G GAYICGEET+L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV P
Sbjct: 130 FDVYLHRGMGAYICGEETSLIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAP 189

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
           TI RRG  W++ FGRE N+GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWD
Sbjct: 190 TICRRGGKWFASFGRERNQGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWD 249

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           NLLAVIPGGSS P LP       +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS 
Sbjct: 250 NLLAVIPGGSSTPILPKHICDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSA 309

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           FYKHESCGQCTPCREG+ W M++M+R  +G A++REID+L E++K +EG TICALG+A A
Sbjct: 310 FYKHESCGQCTPCREGSKWTMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFA 369

Query: 399 WPIQGLIKNFRPLIEERIDQYHR 421
           WPIQGLI++FRP +E RI +Y +
Sbjct: 370 WPIQGLIRHFRPELEARIRKYEQ 392


>gi|300176713|emb|CBK24378.2| subunit NuoF (NDUFV1) [Blastocystis hominis]
          Length = 503

 Score =  528 bits (1360), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 253/424 (59%), Positives = 314/424 (74%), Gaps = 5/424 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+DQDRIFTNLY      +  +M RG W    ++LE G D II ++KASGLRGRGGA F 
Sbjct: 66  LSDQDRIFTNLYSQYDWHIDSAMERGFWYKTKELLEMGPDQIIADIKASGLRGRGGAAFP 125

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D RP++LVVN DESEPGTCKDR+I+R +PH L+EGC++A +A+ A  
Sbjct: 126 SGLKWSFMPKASKDGRPNFLVVNCDESEPGTCKDREIIRKDPHALVEGCLVAGYAMHARA 185

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A+ E Y  G LG N+   GY+ D+ VH GAGAY+CGEE+A L
Sbjct: 186 AYIYIRGEFYNESIRLEEAIHEAYQKGFLGRNACGTGYNFDVFVHRGAGAYVCGEESAQL 245

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G+PRLKPPFPAN GLYGCPTTV N E+++V PTILRRG  W++GFGR+NN G 
Sbjct: 246 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNCETVSVSPTILRRGPEWFAGFGRKNNAGV 305

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE MSI+  EL+EKH GG+RGGWDNL AVIPGG+S   L      
Sbjct: 306 KLFAISGHVNNPCVVEEEMSISLRELLEKHAGGVRGGWDNLQAVIPGGASTRALNKDMCD 365

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MDYD L    SGLG+AAVIVMD+STD++ AI  LS FY HESCGQCTPCREG  W+ 
Sbjct: 366 VALMDYDSLGSFKSGLGSAAVIVMDKSTDMMAAIRNLSHFYMHESCGQCTPCREGLPWVY 425

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI--- 416
            +M R+ +G  ++REID+L E+   IE  TIC L DAA WPI+GL+++++  I ER    
Sbjct: 426 DIMCRMERGQLEEREIDMLMEIGTQIELHTICGLADAAIWPIEGLMRSWKKEILERSRHP 485

Query: 417 DQYH 420
           + YH
Sbjct: 486 ENYH 489


>gi|156778103|gb|ABU95426.1| NADH dehydrogenase 51 kDa subunit [Sawyeria marylandensis]
          Length = 440

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/424 (58%), Positives = 311/424 (73%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLY      L  +  RG W+N + ++ KG DWII+++K SGLRGRGGAGFS
Sbjct: 18  LKDSDRIFTNLYKDFDDFLDGAKKRGDWNNTENLITKGSDWIIDQLKKSGLRGRGGAGFS 77

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+K+SFMPK   ++PHYLV+N DESEP TCKDR+I+RHEPH LIEG ++  +++ A  A
Sbjct: 78  TGLKYSFMPKK-DNKPHYLVINGDESEPQTCKDREIIRHEPHKLIEGALVCGYSLNAKAA 136

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVRGEF  E + LQ A+DE Y SGL+G N+   GYD D+ VH GAGAY+ GEETALLE
Sbjct: 137 YIYVRGEFYNEVKVLQKAIDEAYKSGLIGKNACGTGYDFDVFVHRGAGAYVSGEETALLE 196

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PR+KPPFPA  GL+G PT V+NVE+++VVPTIL+RGA W+S  GR NN GTK
Sbjct: 197 SLEGKSGKPRIKPPFPAQAGLWGFPTMVSNVETVSVVPTILKRGADWFSSLGRPNNTGTK 256

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHV YPCTVEE MSI    LIEKHCGG+RGGWDNLLAVIPGGSS   +P      
Sbjct: 257 LYCISGHVKYPCTVEEEMSIPLKTLIEKHCGGVRGGWDNLLAVIPGGSSTAPIPKKVCDS 316

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L  + S  GTA+++V+D+STDI+KA  R + FYK ESCGQCTPCREG  W+  
Sbjct: 317 VLMDFDSLASVNSSFGTASILVLDKSTDIVKAFARQAHFYKEESCGQCTPCREGYAWITD 376

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++   KG  +  +ID L +  ++I GR+ICAL D A   I GLI NFRP +E +  + +
Sbjct: 377 MLDSFQKGEGRLEDIDFLMDTCQHISGRSICALADGACQGIIGLINNFRPYLEAKCQKKN 436

Query: 421 RCNF 424
           +  F
Sbjct: 437 KHEF 440


>gi|300123837|emb|CBK25108.2| subunit NuoF (NDUFV1) [Blastocystis hominis]
          Length = 490

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/424 (59%), Positives = 314/424 (74%), Gaps = 5/424 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+DQDRIFTNLY      +  +M RG W    ++LE G D II ++KASGLRGRGGA F 
Sbjct: 53  LSDQDRIFTNLYSQYDWHIDSAMERGFWYKTKELLEMGPDQIIADIKASGLRGRGGAAFP 112

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D RP++LVVN DESEPGTCKDR+I+R +PH L+EGC++A +A+ A  
Sbjct: 113 SGLKWSFMPKASKDGRPNFLVVNCDESEPGTCKDREIIRKDPHALVEGCLVAGYAMHARA 172

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A+ E Y  G LG N+   GY+ D+ VH GAGAY+CGEE+A L
Sbjct: 173 AYIYIRGEFYNESIRLEEAIHEAYQKGFLGRNACGTGYNFDVFVHRGAGAYVCGEESAQL 232

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G+PRLKPPFPAN GLYGCPTTV N E+++V PTILRRG  W++GFGR+NN G 
Sbjct: 233 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNCETVSVSPTILRRGPEWFAGFGRKNNAGV 292

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE MSI+  EL+EKH GG+RGGWDNL AVIPGG+S   L      
Sbjct: 293 KLFAISGHVNNPCVVEEEMSISLRELLEKHAGGVRGGWDNLQAVIPGGASTRALNKDMCD 352

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MDYD L    SGLG+AAVIVMD+STD++ AI  LS FY HESCGQCTPCREG  W+ 
Sbjct: 353 VALMDYDSLGSFKSGLGSAAVIVMDKSTDMMAAIRNLSHFYMHESCGQCTPCREGLPWVY 412

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI--- 416
            +M R+ +G  ++REID+L E+   IE  TIC L DAA WPI+GL+++++  I ER    
Sbjct: 413 DIMCRMERGQLEEREIDMLMEIGTQIELHTICGLADAAIWPIEGLMRSWKKEILERSRHP 472

Query: 417 DQYH 420
           + YH
Sbjct: 473 ENYH 476


>gi|326473915|gb|EGD97924.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326480914|gb|EGE04924.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton equinum
           CBS 127.97]
          Length = 511

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/423 (59%), Positives = 307/423 (72%), Gaps = 22/423 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DW                 F 
Sbjct: 85  LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDW----------------SFM 128

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
               W         +P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++  A+ A  A
Sbjct: 129 NFKDWDK-----DTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNATAA 183

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETAL+E
Sbjct: 184 YIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETALIE 243

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++GFGRE N+GTK
Sbjct: 244 SIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQGTK 303

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP      
Sbjct: 304 LFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHICDD 363

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W ++
Sbjct: 364 QMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKWTLQ 423

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Q  
Sbjct: 424 MMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIRQNA 483

Query: 421 RCN 423
           + N
Sbjct: 484 QAN 486


>gi|327295324|ref|XP_003232357.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
           118892]
 gi|326465529|gb|EGD90982.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton rubrum
           CBS 118892]
          Length = 511

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/423 (59%), Positives = 307/423 (72%), Gaps = 22/423 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DW                 F 
Sbjct: 85  LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDW----------------SFM 128

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
               W         +P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++  A+ A  A
Sbjct: 129 NFKDWDK-----DTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNATAA 183

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETAL+E
Sbjct: 184 YIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETALIE 243

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++GFGRE N+GTK
Sbjct: 244 SIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQGTK 303

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP      
Sbjct: 304 LFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHICDD 363

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W ++
Sbjct: 364 QMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKWTLQ 423

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Q  
Sbjct: 424 MMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIRQNA 483

Query: 421 RCN 423
           + N
Sbjct: 484 QAN 486


>gi|126343112|ref|XP_001368340.1| PREDICTED: similar to NADH dehydrogenase [Monodelphis domestica]
          Length = 465

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/421 (60%), Positives = 308/421 (73%), Gaps = 16/421 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 48  LKDEDRIFTNLYGRHEWRLKGAQSRGDWYKTKEILLKGPDWILNEIKTSGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+I   A+GA  A
Sbjct: 108 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIGGRAMGARAA 167

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+    YD D+ V  GAGAYICGEETAL+E
Sbjct: 168 YIYIRGEFYNEASNLQVAIREAYEAGLIGRNACGSDYDFDVFVVRGAGAYICGEETALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK
Sbjct: 228 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGSWFASFGRERNSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 288 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLGVIPGGSSTPLIPKSVCET 347

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRS--TDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            +MD+DGL +  +GLGTAAVIVMDRS  T + +   R+             P   G  WM
Sbjct: 348 VLMDFDGLIQAQTGLGTAAVIVMDRSVRTPLARPAVRM-------------PLPAGVDWM 394

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +VM R VKG A+  EID  +E+SK IEG TICALGD  AWP+QGLI++FRP +E+R+ +
Sbjct: 395 NKVMWRFVKGDARVSEIDAFWEISKQIEGHTICALGDGPAWPVQGLIRHFRPELEDRMHR 454

Query: 419 Y 419
           +
Sbjct: 455 F 455


>gi|195576920|ref|XP_002078321.1| GD22602 [Drosophila simulans]
 gi|194190330|gb|EDX03906.1| GD22602 [Drosophila simulans]
          Length = 499

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/455 (56%), Positives = 313/455 (68%), Gaps = 47/455 (10%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP    +          +DR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKAWHL----------QDREIMRHDPHKLVEGCLIARRAMGAQAA 159

Query: 122 FIYVRGEFIRERESLQAAVDE----------------------------CYASGLLGSNS 153
           +IY+RGEF  E  +L++ +                               +A+G     S
Sbjct: 160 YIYIRGEFYNEEPALRSEISAHPPAVRLSDADAPWAQLPTLIVRVSTSFQHATGHAEPPS 219

Query: 154 --------KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     GYD D+ +H GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA+VG++GCP
Sbjct: 220 WSDWKKACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCP 279

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           TTV NVE++AV PTI RRG  W++ FGR  N GTKLF+ISGHVN PCTVEE MSI   EL
Sbjct: 280 TTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRPCTVEEEMSIPLKEL 339

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           IE+HCGG+ GGWDNLL VIPGGSS P +P       IMD+DGL    + LGTAA+IVMD+
Sbjct: 340 IERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGTAAIIVMDK 399

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           STD+IKAI RL  FYKHESCGQCTPCREG GWM ++M R VKG AQ  EID+L+E+SK I
Sbjct: 400 STDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQI 459

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           EG TICALGD AAWP+QGLI++FRP IE+R+ Q H
Sbjct: 460 EGHTICALGDGAAWPVQGLIRHFRPEIEKRM-QLH 493


>gi|73982779|ref|XP_864317.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 5 [Canis familiaris]
          Length = 424

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/419 (60%), Positives = 302/419 (72%), Gaps = 41/419 (9%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH                         A Q   
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKH-------------------------AAQ--- 306

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                       +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 307 ------------TGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 354

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 355 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 413


>gi|88608878|ref|YP_506590.1| NADH dehydrogenase I subunit F [Neorickettsia sennetsu str.
           Miyayama]
 gi|88601047|gb|ABD46515.1| NADH dehydrogenase I, F subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 413

 Score =  514 bits (1325), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/416 (60%), Positives = 309/416 (74%), Gaps = 7/416 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +DRIF+N+   +G +LS+++ RG W +  K L+K  +WI+ E+K SGLRGRGGAGF
Sbjct: 1   MLKPEDRIFSNIQKREGITLSEALRRGDWKDTKKFLDKEPEWIVEEIKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   + +P YLVVNADESEPGTCKDRDI+R EPH LIEG V+AS A+   
Sbjct: 61  PTGIKWSFMPKEKEAGKPSYLVVNADESEPGTCKDRDIIRFEPHKLIEGIVLASHAMRID 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            ++IY+RGEF  E   L+  + E   + L+    K      I VH GAGAYICGEETALL
Sbjct: 121 VSYIYIRGEFYNESLVLEKVIQEAMDAHLIPEQLK------IFVHRGAGAYICGEETALL 174

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR+KPPFPA  GLYG PTT+NNVESIA VPTIL RG+ W++  G +N+ GT
Sbjct: 175 ESLEGKRGMPRMKPPFPAGCGLYGKPTTINNVESIASVPTILSRGSDWFANLGVKNSCGT 234

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE++ I    LIE++ GG+ GGWDNLLAVIPGGSSVP +      
Sbjct: 235 KIFCISGHVNKPCNVEEALGIPLKFLIEEYAGGVIGGWDNLLAVIPGGSSVPMITKEVAE 294

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +GS LGT  +IVM++ TDII+AI RLS FY HESCGQCTPCREGTGW+ 
Sbjct: 295 TVTMDFDSLRAVGSSLGTGGIIVMNKETDIIRAIERLSHFYMHESCGQCTPCREGTGWLW 354

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            +M++L +G  +K ++D L +++K IEG TICALGDAAAWPIQGLIKNFR  IE R
Sbjct: 355 SIMKQLSEGKGKKSDVDFLLQLTKQIEGNTICALGDAAAWPIQGLIKNFRDEIEAR 410


>gi|254797065|ref|YP_003081903.1| NADH oxidoreductase (quinone), f subunit [Neorickettsia risticii
           str. Illinois]
 gi|254590311|gb|ACT69673.1| NADH oxidoreductase (quinone), f subunit [Neorickettsia risticii
           str. Illinois]
          Length = 413

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/416 (60%), Positives = 308/416 (74%), Gaps = 7/416 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +DRIF+N+   +  +LS+++ RG W +  K L+K  +WII E+K SGLRGRGGAGF
Sbjct: 1   MLKPEDRIFSNIQKRESITLSEALRRGDWKDTKKFLDKEPEWIIEEIKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   + +P YLVVNADESEPGTCKDRDI+R EPH LIEG V+AS A+   
Sbjct: 61  PTGIKWSFMPKEKEAGKPSYLVVNADESEPGTCKDRDIIRFEPHKLIEGIVLASHAMRID 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            ++IY+RGEF  E   L+  + E   + L+    K      I VH GAGAYICGEETALL
Sbjct: 121 VSYIYIRGEFYNESLVLEKVIHEAMDAHLIPEQLK------IFVHRGAGAYICGEETALL 174

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR+KPPFPA  GLYG PTT+NNVESIA VPTIL RG+ W++  G +N+ GT
Sbjct: 175 ESLEGKRGMPRMKPPFPAGCGLYGKPTTINNVESIASVPTILSRGSDWFANLGVKNSCGT 234

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE++ I    LIEK+ GG+ GGWDNLLAVIPGGSSVP +      
Sbjct: 235 KIFCISGHVNKPCNVEEALGIPLKFLIEKYAGGVIGGWDNLLAVIPGGSSVPMITKEVAE 294

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +GS LGT  +IVM++ TDII+AI RLS FY HESCGQCTPCREGTGW+ 
Sbjct: 295 TVTMDFDSLRAVGSALGTGGIIVMNKETDIIRAIERLSHFYMHESCGQCTPCREGTGWLW 354

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            +M++L +G  +K ++D L +++K IEG TICALGDAAAWPIQGLIKNFR  IE R
Sbjct: 355 SLMKQLSEGKGKKSDVDFLLQLTKQIEGNTICALGDAAAWPIQGLIKNFRGEIEAR 410


>gi|326919902|ref|XP_003206216.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like, partial [Meleagris gallopavo]
          Length = 374

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/370 (66%), Positives = 293/370 (79%), Gaps = 1/370 (0%)

Query: 57  GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           GAGF TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+
Sbjct: 1   GAGFPTGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAM 60

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175
           GA  A+IY+RGEF  E  +LQ A+ E Y +GLLG N+    Y  D+ V  GAGAYICGEE
Sbjct: 61  GARAAYIYIRGEFYNEASNLQVAIREAYEAGLLGKNACGSDYAFDVFVVRGAGAYICGEE 120

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE 
Sbjct: 121 TALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGAWFAGFGRER 180

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH GG+RGGWDNLLAVIPGGSS P LP 
Sbjct: 181 NSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPK 240

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
                 +MD+D L +  SGLGTAAVIVMD+STDI+KAI RL  FYKHESCGQCTPCREG 
Sbjct: 241 SVCETVLMDFDSLVQAQSGLGTAAVIVMDKSTDIVKAIARLIEFYKHESCGQCTPCREGV 300

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            WM +VM R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R
Sbjct: 301 DWMNKVMARFVRGDAQTAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDR 360

Query: 416 IDQYHRCNFQ 425
           + ++     Q
Sbjct: 361 MRRFGEAKAQ 370


>gi|145475863|ref|XP_001423954.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391016|emb|CAK56556.1| unnamed protein product [Paramecium tetraurelia]
          Length = 447

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/420 (60%), Positives = 303/420 (72%), Gaps = 15/420 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN+Y      +  ++ RG W     IL  G+DWII+E+K SGLRGRGGAGF 
Sbjct: 23  LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+K+    K  S    +L         GTCKDR+I+RH+PH L+EG +   FA+ A  A
Sbjct: 83  SGLKYLIHAKSQSRWKAFLF--------GTCKDREILRHDPHKLVEGALCVGFAMRARAA 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY RGEF  E  +LQ AVDE Y  G LG N+   GYD D+ VH GAGAYICGEET L+E
Sbjct: 135 YIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLIE 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PRLKPPFPAN GL+GCPTT         V TILRRGA+W++ FGR NNRGTK
Sbjct: 195 SLEGKPGKPRLKPPFPANAGLWGCPTTFQ------FVATILRRGANWFASFGRPNNRGTK 248

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNL  +IPGGSSVP LP      
Sbjct: 249 LFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKETCET 308

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++ 
Sbjct: 309 VLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLVD 368

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+  G A   EID L E++  IEG TICALGDAAAWP+QGLI+ +R  IEERI+ YH
Sbjct: 369 LLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIRTYREEIEERIEDYH 428


>gi|194374217|dbj|BAG57004.1| unnamed protein product [Homo sapiens]
 gi|221045632|dbj|BAH14493.1| unnamed protein product [Homo sapiens]
          Length = 363

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/352 (65%), Positives = 281/352 (79%), Gaps = 1/352 (0%)

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           M K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A+IY+RGE
Sbjct: 1   MNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGE 60

Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           F  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+ES+EGK+G
Sbjct: 61  FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH
Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           VN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P       +MD+D 
Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA 240

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +VM R V+
Sbjct: 241 LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVR 300

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 301 GDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 352


>gi|332249694|ref|XP_003273992.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 1 [Nomascus leucogenys]
 gi|332249696|ref|XP_003273993.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 2 [Nomascus leucogenys]
 gi|332249698|ref|XP_003273994.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 3 [Nomascus leucogenys]
          Length = 363

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/349 (66%), Positives = 279/349 (79%), Gaps = 1/349 (0%)

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           M K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A+IY+RGE
Sbjct: 1   MNKPSYGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGE 60

Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           F  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+ES+EGK+G
Sbjct: 61  FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH
Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           VN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P       +MD+D 
Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA 240

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +VM R V+
Sbjct: 241 LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVR 300

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+
Sbjct: 301 GDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 349


>gi|195342920|ref|XP_002038046.1| GM17964 [Drosophila sechellia]
 gi|194132896|gb|EDW54464.1| GM17964 [Drosophila sechellia]
          Length = 435

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/420 (58%), Positives = 294/420 (70%), Gaps = 27/420 (6%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 39  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 98

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 99  SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 158

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLES 181
           +IY+RGEF  E  ++Q A+ E Y +G         YD D+ +H GAGAYICGEETAL+ES
Sbjct: 159 YIYIRGEFYNEASNMQLAIAEAYQAG---------YDFDVFMHRGAGAYICGEETALIES 209

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK+G+PRLKPPFPA+VG++         E++AV          W SG           
Sbjct: 210 LEGKQGKPRLKPPFPADVGVFDAQPQYQ-CETVAV-------HHHWPSGG---------- 251

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
                 V  PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P       
Sbjct: 252 VGSPASVAPPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDV 311

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM ++
Sbjct: 312 IMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKI 371

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+  + +
Sbjct: 372 MTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHAK 431


>gi|14043258|gb|AAH07619.1|AAH07619 Unknown (protein for IMAGE:3355366) [Homo sapiens]
          Length = 354

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/342 (66%), Positives = 277/342 (80%), Gaps = 1/342 (0%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A+IY+RGEF  E  +LQ 
Sbjct: 2   YLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQV 61

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA
Sbjct: 62  AIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPA 121

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           +VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE 
Sbjct: 122 DVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEE 181

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P       +MD+D L +  +GLGT
Sbjct: 182 MSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGT 241

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +VM R V+G A+  EID 
Sbjct: 242 AAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDS 301

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 302 LWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 343


>gi|7684616|gb|AAF08194.2|AF146339_1 NADH:ubiquinone oxidoreductase 51 kDa subunit [Yarrowia lipolytica]
          Length = 379

 Score =  489 bits (1259), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 224/345 (64%), Positives = 278/345 (80%), Gaps = 1/345 (0%)

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A  A+IY+RGEF  E   L
Sbjct: 3   PRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLLAGRAMNATAAYIYIRGEFYNEAAVL 62

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q A++E YA+GL+G ++   GYD D+ +H G GAY+CGEET+L+ESLEGK G+PRLKPPF
Sbjct: 63  QTAINEAYAAGLIGKDACGSGYDFDVYIHRGMGAYVCGEETSLIESLEGKAGKPRLKPPF 122

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA VGL+G P+TV NVE++AV PTILRRG  W++ FGRE N GTKLF ISG+VN PCTVE
Sbjct: 123 PAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRERNSGTKLFCISGNVNEPCTVE 182

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
           E MSI   EL+EKHCGGI+GGWDNLL VIPGG SVP LP       +MD+D LK++ SGL
Sbjct: 183 EEMSIPLRELLEKHCGGIKGGWDNLLGVIPGGCSVPILPKNICEDVLMDFDALKDVQSGL 242

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTAAVIV+++  D+I+AI R + FYKHESCGQCTPCREGT W+++ M+R   G A++REI
Sbjct: 243 GTAAVIVINKQQDVIRAIQRFAAFYKHESCGQCTPCREGTTWLLKAMDRFRTGQAKEREI 302

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           D+LYE++K+IEG TICALGDAAAWPIQGLI+NFRP +E R+ ++H
Sbjct: 303 DMLYELTKDIEGHTICALGDAAAWPIQGLIRNFRPEMETRMKKFH 347


>gi|215694413|dbj|BAG89406.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704716|dbj|BAG94744.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 411

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 229/336 (68%), Positives = 267/336 (79%), Gaps = 1/336 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L  A +E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 316 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RL
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARL 411


>gi|123476595|ref|XP_001321469.1| hydrogenase chain [Trichomonas vaginalis G3]
 gi|55793663|gb|AAV65812.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Trichomonas
           vaginalis]
 gi|121904296|gb|EAY09246.1| hydrogenase chain, putative [Trichomonas vaginalis G3]
          Length = 429

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/414 (54%), Positives = 305/414 (73%), Gaps = 2/414 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
            L  +DRIF NL+G +G  L+ +  RG W+  +++++KG+++I+NEVK S +RGRGGAGF
Sbjct: 13  FLDPKDRIFPNLFGDEGADLASAQKRGDWNQTEELIKKGKEFILNEVKKSEIRGRGGAGF 72

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG KWSF+PK  S  PHYL +NADE EPGTCKDR I+ +EPH L+EG ++AS+ I AH 
Sbjct: 73  STGQKWSFVPKP-SGIPHYLCINADEGEPGTCKDRQILTNEPHKLVEGALLASYTIHAHT 131

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A++YVRGEF  E   LQ A+DE YA+GL+G N+K G+D D+ +H GAGAY+CGEETALL 
Sbjct: 132 AYVYVRGEFRHEIACLQKAIDEAYAAGLIGKNNKFGWDFDMYIHSGAGAYVCGEETALLN 191

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PR KPP+PA  GL+  PT +NNVE+I+ VPTI +RG  W+S  G + ++GTK
Sbjct: 192 SIEGKAGRPRFKPPYPAAKGLFQKPTIINNVETISSVPTICKRGGDWFSSIGIKGSKGTK 251

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +++ISGHVN+PC VEE+M I   +LI K+ GG+RGGWDNLL +IPGG S P L   Q   
Sbjct: 252 IYAISGHVNHPCVVEEAMGIPIKDLINKYAGGVRGGWDNLLCLIPGGLSCPILTKEQCET 311

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+M Y+ L  MGS LGT A+IVMD+ST++ +A  R+S FY HESCGQC PCREGT  +  
Sbjct: 312 AVMGYNELSAMGSALGTGAIIVMDKSTNLYEAFRRVSHFYMHESCGQCGPCREGTAKLSD 371

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +M++  +G A K ++ +L +V+       ICAL  A++ PI+GL+K FRP +E+
Sbjct: 372 IMDKFAEGKATKHDLLMLKKVAYQTS-NCICALAGASSDPIKGLLKQFRPELEK 424


>gi|307942122|ref|ZP_07657473.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4]
 gi|307774408|gb|EFO33618.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4]
          Length = 319

 Score =  484 bits (1247), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/299 (75%), Positives = 256/299 (85%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YGL    L  +  RG WD+   +L+KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNIYGLNDWGLEGAKKRGQWDDTKALLDKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA  
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G G+ NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGKPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           LF ISGHVN PCTVEE + I F ELI++HCGGIRGGWDN LAVIPGGSSVPCL A Q++
Sbjct: 241 LFCISGHVNQPCTVEEELGIPFRELIDRHCGGIRGGWDNFLAVIPGGSSVPCLTAEQLK 299


>gi|218671274|ref|ZP_03520944.1| NADH dehydrogenase I subunit F [Rhizobium etli GR56]
          Length = 290

 Score =  481 bits (1239), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/285 (79%), Positives = 250/285 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD    ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 2   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKHILEKGRDWIINEMKASGLRGRGGAGF 61

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ 
Sbjct: 62  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 121

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 122 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 181

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 182 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 241

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285
           LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWD   +  P
Sbjct: 242 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDICSSSFP 286


>gi|218514662|ref|ZP_03511502.1| NADH dehydrogenase I subunit F [Rhizobium etli 8C-3]
          Length = 283

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 225/282 (79%), Positives = 249/282 (88%)

Query: 23  SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
           +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF TG+KWSFMPK    RPHYLVV
Sbjct: 2   AMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVV 61

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           NADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ A+IYVRGE+IRERE+LQAA+DE
Sbjct: 62  NADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANAAYIYVRGEYIREREALQAAIDE 121

Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
           CY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN+GLY
Sbjct: 122 CYDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLY 181

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           GCPTTVNNVESIAV PTILRRGA W+S  GR NN GTKLF +SGHVN PCTVEE M ITF
Sbjct: 182 GCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTKLFMLSGHVNKPCTVEEEMGITF 241

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
            EL+++H GGIRGGWDNLLAVIPGG+S P +PA  +    MD
Sbjct: 242 RELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIIDCPMD 283


>gi|218678678|ref|ZP_03526575.1| NADH dehydrogenase I subunit F [Rhizobium etli CIAT 894]
          Length = 269

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/269 (80%), Positives = 241/269 (89%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKH 269
           LF +SGHVN PCTVEE M ITF EL+++H
Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRH 269


>gi|323649954|gb|ADX97063.1| mitochondrial NADH dehydrogenase flavoprotein 1 [Perca flavescens]
          Length = 341

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/337 (65%), Positives = 272/337 (80%), Gaps = 1/337 (0%)

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EPGTCKDR+IMR++PH L+EGC++A  A+GA  A+IY+RGEF  E  +LQ A++E YA
Sbjct: 1   EGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYA 60

Query: 146 SGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +GL+G +    GYD D+ V  GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA+VG++GC
Sbjct: 61  AGLIGKDCCGSGYDFDVFVMRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGC 120

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PTTV NVE++AV PTI RRG  W+ GFGRE N GTKLF+ISGHVN PCTVEE MSI   +
Sbjct: 121 PTTVANVETVAVAPTICRRGGPWFLGFGRERNSGTKLFNISGHVNNPCTVEEEMSIPLKD 180

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           LIE+H GG+RGGWDNLLAVIPGGSS P +P       +MD+DGL +  +GLGTAA+IVMD
Sbjct: 181 LIERHAGGVRGGWDNLLAVIPGGSSTPLIPKNVCEEVLMDFDGLIQAQTGLGTAALIVMD 240

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
           +STDII+AI RL  FYKHESCGQCTPCREG  WM  +M R VKG A+  EID+++E+SK 
Sbjct: 241 KSTDIIRAIARLIEFYKHESCGQCTPCREGVDWMNNMMWRFVKGDARPSEIDMIWELSKQ 300

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           IEG TICALGD AAWP+QGLI++FRP++E RI ++ +
Sbjct: 301 IEGHTICALGDGAAWPVQGLIRHFRPVMESRIAEHQQ 337


>gi|218460342|ref|ZP_03500433.1| NADH dehydrogenase I subunit F [Rhizobium etli Kim 5]
          Length = 263

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/262 (82%), Positives = 235/262 (89%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITF 262
           LF +SGHVN PCTVEE M ITF
Sbjct: 241 LFMLSGHVNKPCTVEEEMGITF 262


>gi|148701042|gb|EDL32989.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_a [Mus
           musculus]
          Length = 334

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/323 (65%), Positives = 258/323 (79%), Gaps = 1/323 (0%)

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156
           MRH+PH L+EGC++   A+GA  A+IY+RGEF  E  +LQ A+ E Y +GL+G N+    
Sbjct: 1   MRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSD 60

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           YD D+ V  GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV
Sbjct: 61  YDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV 120

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GG
Sbjct: 121 SPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGG 180

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
           WDNLLAVIPGGSS P +P       +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL
Sbjct: 181 WDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARL 240

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
             FYKHESCGQCTPCREG  WM +VM R VKG A+  EID L+E+SK IEG TICALGD 
Sbjct: 241 IEFYKHESCGQCTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDG 300

Query: 397 AAWPIQGLIKNFRPLIEERIDQY 419
           AAWP+QGLI++FRP +E+R+ ++
Sbjct: 301 AAWPVQGLIRHFRPELEDRMQRF 323


>gi|149061921|gb|EDM12344.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_b
           [Rattus norvegicus]
          Length = 334

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/323 (64%), Positives = 257/323 (79%), Gaps = 1/323 (0%)

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156
           MRH+PH L+EGC++   A+GA  A+IY+RGEF  E  +LQ A+ E Y +GL+G N+    
Sbjct: 1   MRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSD 60

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           YD D+ V  GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV
Sbjct: 61  YDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV 120

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GG
Sbjct: 121 SPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVLGG 180

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
           WDNLLAVIPGGSS P +P       +MD+D L +  +GLGTAAVIVM+ STDI+KAI RL
Sbjct: 181 WDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMNSSTDIVKAIARL 240

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
             FYKHESCGQCTPCREG  WM +VM R VKG A+  EID L+E+SK IEG TICALGD 
Sbjct: 241 IEFYKHESCGQCTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDG 300

Query: 397 AAWPIQGLIKNFRPLIEERIDQY 419
           AAWP+QGLI++FRP +E+R+ ++
Sbjct: 301 AAWPVQGLIRHFRPELEDRMQRF 323


>gi|255647864|gb|ACU24391.1| unknown [Glycine max]
          Length = 315

 Score =  446 bits (1146), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/303 (68%), Positives = 249/303 (82%), Gaps = 1/303 (0%)

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A  A+IY+RGE++ ER++L+ A  E YA+GLLG N+   G+D D+ +H+GAGAYICGEE 
Sbjct: 3   ASAAYIYIRGEYVNERKNLEKARQEAYAAGLLGENACGSGFDFDVHIHYGAGAYICGEEA 62

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALLESLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN
Sbjct: 63  ALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNN 122

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTKLF +SGHVN PCTVEE MSI   ELIE+HCGGIRGGWDNLLAVIPGGSSVP +P  
Sbjct: 123 AGTKLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGIRGGWDNLLAVIPGGSSVPLIPKH 182

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                 MDYD LK +G+GLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTG
Sbjct: 183 VCDDIFMDYDALKAVGTGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTG 242

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           W+  +MER+  G A+  EID+L E++K IEG TICALGDAAAWP+QGLIK+FRP +E RI
Sbjct: 243 WLWTIMERMKVGNAKLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIKHFRPELERRI 302

Query: 417 DQY 419
            ++
Sbjct: 303 REH 305


>gi|117926904|ref|YP_867521.1| NADH-quinone oxidoreductase, F subunit [Magnetococcus sp. MC-1]
 gi|117610660|gb|ABK46115.1| NADH dehydrogenase subunit F [Magnetococcus sp. MC-1]
          Length = 424

 Score =  441 bits (1135), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/417 (56%), Positives = 301/417 (72%), Gaps = 5/417 (1%)

Query: 8   IFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N++ +QG+ +L+ +  +G +  ++K L    + II EVK++GLRGRGGAGF  G+KW
Sbjct: 8   LFKNIH-IQGQNTLAVAQQQGAYKRMEKALGMSGEEIIQEVKSAGLRGRGGAGFPAGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+PK    RP YLV NADE EPGTCKDRD+MR +PH LIEG +IA +A+ +   +IY+R
Sbjct: 67  SFIPKD-DPRPKYLVCNADEGEPGTCKDRDLMRFDPHLLIEGMIIAGYAVNSKQGYIYIR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF RE E L+AAV E YA+ LLG N    G D D+ VH GAGAY+CGEE+ALL SLEG+
Sbjct: 126 GEFYREAEVLEAAVAEAYAANLLGKNILGKGVDFDLAVHRGAGAYVCGEESALLNSLEGE 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPRLKPPFPANVGLYGCPT +NNVE++  VP IL +G +WYS  G E + GTKLFS+S
Sbjct: 186 KGQPRLKPPFPANVGLYGCPTVINNVETLCAVPAILEKGGAWYSKLGVEKSSGTKLFSVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHVN P   E  + I    LI  + GG+RGGW+NL  VIPGGSS P L   Q    +M Y
Sbjct: 246 GHVNKPGNYEVELGIPLKSLINDYAGGVRGGWENLKGVIPGGSSTPVLIPEQCETILMSY 305

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L   GS LG  +VIVMD+ST I+KAI RLS FY+HESCGQCTPCREGTGW+ ++M+R+
Sbjct: 306 EALAGAGSMLGAGSVIVMDKSTCIVKAIARLSKFYRHESCGQCTPCREGTGWLAQIMDRI 365

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             G  ++ +IDLL  V  NI+G+TICALGDAAA P+ G I++FR   E  + ++ RC
Sbjct: 366 ETGQGREGDIDLLLSVCSNIQGKTICALGDAAAMPVVGAIRHFRDEFEYHV-KHGRC 421


>gi|317051066|ref|YP_004112182.1| NADH-quinone oxidoreductase subunit F [Desulfurispirillum indicum
           S5]
 gi|316946150|gb|ADU65626.1| NADH-quinone oxidoreductase, F subunit [Desulfurispirillum indicum
           S5]
          Length = 428

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/420 (51%), Positives = 281/420 (66%), Gaps = 5/420 (1%)

Query: 7   RIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           ++ +  YG+    +L  +   G +  +DK      D I+ EVK SGLRGRGGAGF  GMK
Sbjct: 10  KVLSAKYGIANSFTLDVARQHGGYAQIDKAFSMSPDQIVEEVKQSGLRGRGGAGFPAGMK 69

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSF+PK  +D+P YL VN+DESEPGT KDR I+  +PH LIEG +I  +AI +H A+IY+
Sbjct: 70  WSFLPKE-TDKPIYLAVNSDESEPGTFKDRQILEKDPHMLIEGIIITCYAIKSHDAYIYI 128

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGE++R+ E LQ A+DE YA+GLLG N+   GY VD+ VH GAGAYICGEE ALLES+EG
Sbjct: 129 RGEYVRQAEGLQRAIDEAYAAGLLGENACGKGYRVDVTVHRGAGAYICGEEMALLESIEG 188

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR+KPPFPA VGLYG PT +NNV++IA VP I+  GA+ Y  FG E + GT LF I
Sbjct: 189 KKGQPRVKPPFPALVGLYGAPTIINNVQTIASVPYIIEHGAAGYRQFGTEKSPGTFLFGI 248

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHV  P   E  + ++  E I+K  GGI  G   L AVIPGGSS P L A  +    +D
Sbjct: 249 SGHVEKPGVYETELGVSMKEFIDKMAGGIWKG-RKLKAVIPGGSSCPVLNAEDVEKCTLD 307

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           Y+ L E GS LG+  +IV D  T +++ +  L  FY+HESCGQCTPCREGTGW+ +++  
Sbjct: 308 YESLVENGSMLGSGGMIVSDDQTCMVRNLKNLLYFYQHESCGQCTPCREGTGWIYKIVSD 367

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +  G  +  ++DLL E+  N+EG+T+C L  AAA P +  I  FR   EE I +  +C F
Sbjct: 368 IEDGKGKMEDLDLLLEICDNMEGKTVCVLSGAAAMPCRSHILKFRQEFEEHI-KLGKCPF 426


>gi|269469173|gb|EEZ80715.1| NADH dehydrogenase I chain F [uncultured SUP05 cluster bacterium]
          Length = 422

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/403 (54%), Positives = 273/403 (67%), Gaps = 6/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           SL    + G +    KIL  E   D II+E+K SGLRGRGGAGF TG+KWSFMP+  +D 
Sbjct: 16  SLKTYEANGGYSVWRKILKGELTPDQIIDELKTSGLRGRGGAGFPTGLKWSFMPR-NADM 74

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N+DE EPGTCKDRDI+R  PH++IEG  I  F + A   + Y+RGEF+      
Sbjct: 75  QKYVVCNSDEGEPGTCKDRDILRFNPHSVIEGMAIGGFVMNATKGYNYIRGEFMEPFYRF 134

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ E Y +GLLG N  K     D+  H GAGAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 135 EGALKEAYKAGLLGENIDKSSISFDLYAHLGAGAYICGEETALLESLEGKKGQPRFKPPF 194

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PAN+GLYG PTT+NN ES A VP IL +G  W++  G EN+ G KLFS++GHVN P   E
Sbjct: 195 PANIGLYGKPTTINNTESFASVPEILAQGGQWFADIGVENSGGCKLFSVTGHVNKPSNFE 254

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  +F +L+ K  GGIR G   L AVIPGGSS P L A    G  MDYDG+++ GS L
Sbjct: 255 VPMGTSFKDLL-KMAGGIRKG-RKLKAVIPGGSSTPVLTADVAMGMTMDYDGIEKAGSML 312

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G  +VIVMD +T +++ + RL+ FY  ESCGQCTPCREGTGW+ RV++R++ G  +  +I
Sbjct: 313 GAGSVIVMDDTTCMVETLTRLAHFYYDESCGQCTPCREGTGWLYRVLKRIMDGNGKADDI 372

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           DLL  V + I G TICALGDAAA P++  ++NFR   E  I+ 
Sbjct: 373 DLLLGVQEKIIGNTICALGDAAAMPVESFLRNFREEFEYYIEH 415


>gi|148244394|ref|YP_001219088.1| NADH dehydrogenase I chain F [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326221|dbj|BAF61364.1| NADH dehydrogenase I chain F [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 422

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/411 (53%), Positives = 280/411 (68%), Gaps = 6/411 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           F NL   Q  SL    + G + +  KIL  E   + II+E+K SGLRGRGGAGF TG+KW
Sbjct: 6   FKNLKKDQCWSLKIYEASGGYSSWRKILKGELTPEQIIDELKLSGLRGRGGAGFPTGLKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+  SD   Y+V N+DE EPGTCKDRDI+R  PH +IEG  I  F + A   + Y+R
Sbjct: 66  SFMPR-HSDGQKYVVCNSDEGEPGTCKDRDILRFNPHAVIEGMAIGGFVMNASVGYNYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF+   +  ++A++E Y +GLLG N +    + D+  H GAGAYICGEETALLES+EGK
Sbjct: 125 GEFMEPFKRFESALEEAYKAGLLGQNINNSSINFDLYTHLGAGAYICGEETALLESIEGK 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPANVGL+G PTT+NN ES A VP ILR G  W++  G EN+ G KLFS+S
Sbjct: 185 KGQPRFKPPFPANVGLFGKPTTINNTESFASVPEILRCGGQWFADIGVENSGGCKLFSVS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M I+F +L+E   GG+R G   L AVIPGGSS P L A  +    MDY
Sbjct: 245 GHVTNPANFEVPMGISFKDLLE-MAGGMRDG-AKLKAVIPGGSSTPVLTAEIVMNMTMDY 302

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DG+++ GS LG  +VIVM+ ST +++ + RL+ FY  ESCGQCTPCREGTGW+ RV++R+
Sbjct: 303 DGIEKAGSMLGAGSVIVMNESTCMVEVLTRLAHFYYDESCGQCTPCREGTGWLYRVLKRI 362

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + G  ++ +IDLL  V   I G TICALGDAAA P++  ++NFR   E  I
Sbjct: 363 IDGNGRQGDIDLLLSVQNKIMGNTICALGDAAAMPVESFLRNFREEFEYYI 413


>gi|121609757|ref|YP_997564.1| NADH-quinone oxidoreductase subunit F [Verminephrobacter eiseniae
           EF01-2]
 gi|121554397|gb|ABM58546.1| NADH-quinone oxidoreductase, F subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 452

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/414 (52%), Positives = 281/414 (67%), Gaps = 12/414 (2%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65
           GL G   +L+D  +RG +  + ++L +        D ++  VK SGLRGRGGAGF TG+K
Sbjct: 32  GLNGSNWTLADYEARGGYQGLRRVLGRDGGQGLTPDQVLAMVKESGLRGRGGAGFPTGLK 91

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    +  YLV N+DE EPGTCKDRDI++  PH +IEG +IA++A+G    + Y+
Sbjct: 92  WSFMPRSFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMLIAAYAMGISVGYNYI 150

Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE  +  E  + A+DE  A+G LG      G+D  +   HG GAYICGEETALLESLEG
Sbjct: 151 HGEIFKTYERFEVALDEARAAGYLGHGILGSGFDFQLHASHGFGAYICGEETALLESLEG 210

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFP + GLYG PTT+NN E+ A VP I+R GA+ Y   G+ NN GTK+FS+
Sbjct: 211 KKGQPRFKPPFPVSYGLYGKPTTINNTETFAAVPWIMRHGAAAYLECGKPNNGGTKIFSV 270

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  M    MD
Sbjct: 271 SGDVELPGNYEVPLGTPFAKLLEL-AGGVRQG-RRLKAVIPGGSSAPVLPAAAMMACTMD 328

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIV+D S D+++++WRLS FY HESCGQCTPCREGTGWM RV++R
Sbjct: 329 YDAIAKAGSMLGSGAVIVLDDSRDMVESLWRLSYFYMHESCGQCTPCREGTGWMWRVIDR 388

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +  G  +  +++LL  V+ NI+GRTICALGDAAA P++ +IK+FRP  E  I +
Sbjct: 389 IRHGQGRAGDLELLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALIGK 442


>gi|114321114|ref|YP_742797.1| NADH-quinone oxidoreductase, F subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227508|gb|ABI57307.1| NADH dehydrogenase subunit F [Alkalilimnicola ehrlichii MLHE-1]
          Length = 425

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/404 (53%), Positives = 279/404 (69%), Gaps = 7/404 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           SL    + G +   +KIL++   ++ II  VK + LRGRGGAGF  G+KW FMP+    +
Sbjct: 17  SLETYRAMGGYQAWEKILKEKTPQEEIIETVKKANLRGRGGAGFPAGVKWGFMPRNAPGQ 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER-ES 135
             Y+V N+DESEPGTCKDRDI+R  PH L+EG  IA +A+GA   + Y+RGEF  E  E 
Sbjct: 77  -KYIVCNSDESEPGTCKDRDILRFNPHALVEGMAIAGYAMGATVGYNYLRGEFHHEPFER 135

Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           ++ AV E   +GLLG N +  G D ++  H GAGAYICGEE+AL+ESLEGKKGQPR KPP
Sbjct: 136 IEQAVREAREAGLLGRNIQGSGIDFELHNHIGAGAYICGEESALMESLEGKKGQPRYKPP 195

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA VG+YG PTT+NN E++A VP+I+R+G+ W+   G+ NN G K+F +SGHV  P   
Sbjct: 196 FPAQVGVYGRPTTINNTETLASVPSIMRKGSEWFLELGKPNNGGEKIFCVSGHVERPGNF 255

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F +L+E   GG+RGG   L AVIPGGSS+P +P   M  A MDYDGL E+GS 
Sbjct: 256 EVPLGTPFKDLLEM-AGGVRGG-RKLKAVIPGGSSMPVVPGETMLQATMDYDGLAEIGSA 313

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+  VIVMD +TD++KAI R+S FY  ESCGQCTPCREGTGWM RV+ R+V+G  +  +
Sbjct: 314 LGSGGVIVMDETTDMVKAILRISRFYFAESCGQCTPCREGTGWMQRVLRRIVEGKGRHED 373

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           I+LL   +  I G TICA G+AAAWP+Q  +K+FR   E  ++ 
Sbjct: 374 IELLEAAAGQIAGHTICAFGEAAAWPVQSFLKHFRHEFEYYVEH 417


>gi|270158109|ref|ZP_06186766.1| NADH-quinone oxidoreductase F subunit [Legionella longbeachae
           D-4968]
 gi|289163626|ref|YP_003453764.1| NADH dehydrogenase I chain F [Legionella longbeachae NSW150]
 gi|269990134|gb|EEZ96388.1| NADH-quinone oxidoreductase F subunit [Legionella longbeachae
           D-4968]
 gi|288856799|emb|CBJ10610.1| NADH dehydrogenase I chain F [Legionella longbeachae NSW150]
          Length = 425

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/400 (54%), Positives = 274/400 (68%), Gaps = 10/400 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +LS   S G +    KIL++      II+E+K S LRGRGGAGF TG+KWSFM +   + 
Sbjct: 19  TLSAYESVGGYSAWRKILKEQTSPQHIIDELKTSALRGRGGAGFPTGLKWSFMNR---NN 75

Query: 77  P--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           P   Y+V N+DE EPGTCKDRDI+R  PH LIEG  IA + +GA   + Y+RGEF    E
Sbjct: 76  PVQKYVVCNSDEGEPGTCKDRDILRFNPHQLIEGMAIAGYTMGATVGYNYIRGEFWLPYE 135

Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
             + A+ E YA+GLLG N    G+D D+  H GAGAYICGEETALL SLEGKKGQPR KP
Sbjct: 136 HTEMAIKEAYAAGLLGKNILGSGFDFDLYNHLGAGAYICGEETALLNSLEGKKGQPRFKP 195

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPAN GLYG PTT+NN E+ A VP I+ +G  W+   G+ NN G K FS+SGHVN P  
Sbjct: 196 PFPANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPGN 255

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  +   F  L+E   GG+R G   + AVIPGG+S+P LP   M G  MDYD +++ GS
Sbjct: 256 FEIPLGTPFKMLVEL-AGGVREG-RKIKAVIPGGTSMPVLPGDVMMGLDMDYDSIQKAGS 313

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           GLG+ AVI+MD +T ++ A++R++ FY  ESCGQCTPCREGTGWM+R++ R+  G  +  
Sbjct: 314 GLGSGAVIIMDETTCMVDALYRIAEFYMDESCGQCTPCREGTGWMVRLLHRIKAGHGEPG 373

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +++ L  V+ NIEGRTICALG+AAAWP+Q  IK+FR   E
Sbjct: 374 DVERLVNVANNIEGRTICALGEAAAWPVQSFIKHFRDEFE 413


>gi|198284341|ref|YP_002220662.1| NADH-quinone oxidoreductase subunit F [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667549|ref|YP_002427003.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248862|gb|ACH84455.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519762|gb|ACK80348.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 427

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/423 (51%), Positives = 277/423 (65%), Gaps = 14/423 (3%)

Query: 8   IFTNLYGLQGKSLSDS------MSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAG 59
           +F N   LQ + L DS         G +D + ++L      D II+E+K S LRGRGGAG
Sbjct: 1   MFVNGVTLQNRGLPDSHRLSVYAGTGGYDALRRVLLDSMAPDQIISEIKKSALRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWSFMPK  +    YL+ NADE EPGTCKDRDIMR+EPH LIEG +I ++A+GA 
Sbjct: 61  FPTGLKWSFMPKGVTGT-KYLLCNADEGEPGTCKDRDIMRYEPHRLIEGMIIGAYAMGAS 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177
             +I++RGEF+     ++ A++E YA G LG N  LG D   D+ VH GAGAYICGEETA
Sbjct: 120 TGYIFIRGEFVEPIHIVEGALEEAYAKGYLGQNI-LGTDFSFDLYVHRGAGAYICGEETA 178

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+E+LEGKKGQPR KPPFPA+ GLYG PTT+NNVE+ A VP+I+ +G  W+   G+ NN 
Sbjct: 179 LMEALEGKKGQPRFKPPFPASYGLYGQPTTINNVETFASVPSIIAKGGEWFLNLGKPNNG 238

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++GHV  P   E  M   F EL+E   GG+R G   L AVIPGG+S P +    
Sbjct: 239 GTKIFSVTGHVQRPGNYEVPMGTPFKELLEM-AGGLRPG-RQLKAVIPGGTSTPMVGGEA 296

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    MDYD + + GS LG  +VIV+D S  I+K + R++ FY HESCGQCTPCREG GW
Sbjct: 297 MMAVTMDYDSIAKSGSALGAGSVIVIDDSVCIVKVVERIARFYMHESCGQCTPCREGMGW 356

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + RVM RL  G  ++ ++ LL +V   IEGRTICAL D    P+   ++ FR   E  I 
Sbjct: 357 LWRVMHRLENGQGREEDLQLLLDVGSRIEGRTICALADGGVAPVVSSVRLFREEYEYHIR 416

Query: 418 QYH 420
             H
Sbjct: 417 HKH 419


>gi|300113270|ref|YP_003759845.1| NADH-quinone oxidoreductase subunit F [Nitrosococcus watsonii
           C-113]
 gi|299539207|gb|ADJ27524.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus watsonii
           C-113]
          Length = 427

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/381 (55%), Positives = 268/381 (70%), Gaps = 5/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+E+K SGLRGRGGAGF TG+KWSFMPK  +    Y+V N+DE EPGT KDRDI+R+ P
Sbjct: 45  IIDEIKTSGLRGRGGAGFPTGLKWSFMPKDLAGI-KYIVCNSDEGEPGTFKDRDILRYNP 103

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG  IA + IGA   + Y RGEF    E  + A++E Y +GLLG N    G D D+
Sbjct: 104 HQLIEGMAIAGYTIGATVGYNYTRGEFSEPIERFEDALEEAYQAGLLGKNILASGVDFDL 163

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
             H GAGAYICGEETALLESLEGKKG PR KPPFPA  GLYG PTT+NN E++A VP IL
Sbjct: 164 YSHPGAGAYICGEETALLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTETLASVPVIL 223

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +G  W+   G   + GTK+FS+SGHVN P   E  M I+F +L+E   GG+R G + L 
Sbjct: 224 EKGGPWFLKLGTPTSGGTKIFSVSGHVNRPGNYEVPMGISFKDLLEL-AGGMRNG-NALK 281

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVIPGG+SVP +PA  +  A MDYD L + GS LG  +VI+MD +T +++A+ R+S FY+
Sbjct: 282 AVIPGGTSVPVMPAETIMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYR 341

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCGQCTPCREGTGW+ RV+ R+ +G   + ++D +  V++NI+G TICALGDAAA P+
Sbjct: 342 EESCGQCTPCREGTGWLYRVVHRIEQGQGTQEDLDKVVNVAQNIDGHTICALGDAAAAPV 401

Query: 402 QGLIKNFRPLIEERIDQYHRC 422
              IK+FR   +  ID + RC
Sbjct: 402 ISFIKHFRDEFQYHID-HKRC 421


>gi|226486988|emb|CAX75359.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma
           japonicum]
          Length = 353

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/316 (62%), Positives = 248/316 (78%), Gaps = 2/316 (0%)

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIV 163
           L++G VIA  A+GA+ A+IY+RGEF  E  ++Q A+ E Y +G LG N+   G++ D+ +
Sbjct: 23  LLKG-VIAGKAMGANVAYIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYM 81

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
           H GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RR
Sbjct: 82  HRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRR 141

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
           G  W++ FGRE NRGTKLF+ISGHVN PCTVEE MSI   +LIE+H GG+ GGWDNLLAV
Sbjct: 142 GGDWFASFGRERNRGTKLFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAV 201

Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
           IPGGSS P LP       +MD+D L +  SGLGTAA+IVM+RS D++  I RL  FY+HE
Sbjct: 202 IPGGSSTPLLPKDICSTVLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHE 261

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403
           SCGQCTPCREG  WM ++M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QG
Sbjct: 262 SCGQCTPCREGCRWMGQIMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQG 321

Query: 404 LIKNFRPLIEERIDQY 419
           LI++FRP +E R  ++
Sbjct: 322 LIRHFRPELEARFAKH 337


>gi|71906593|ref|YP_284180.1| NADH-quinone oxidoreductase, F subunit [Dechloromonas aromatica
           RCB]
 gi|71846214|gb|AAZ45710.1| NADH dehydrogenase subunit F [Dechloromonas aromatica RCB]
          Length = 442

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/403 (53%), Positives = 276/403 (68%), Gaps = 6/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           SL D ++RG +  + +IL+    ++ +I+EVK S LRGRGGAGF TG+KWSFMP+     
Sbjct: 22  SLKDYVARGGYAQLKRILDSKMTQEDVISEVKKSVLRGRGGAGFPTGLKWSFMPRSFPGD 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDIMR+ PH +IEG  IA++A+GA+  + YV GE   E +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIMRYNPHAVIEGMAIAAYAMGANRGYNYVHGEVWLEYKRF 140

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+D+  A+G +G N    G++ ++  HHG GAYICGEETALLES+EGKKGQPR KPPF
Sbjct: 141 EEALDQARAAGFIGQNILGSGFNFELFAHHGYGAYICGEETALLESIEGKKGQPRFKPPF 200

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN E+ A +P IL+ G   +   G+ NN GTKLFS+SGHVN P   E
Sbjct: 201 PASFGLYGKPTTINNTETFASIPFILKMGGEEFLNLGKPNNGGTKLFSVSGHVNRPGNYE 260

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F  L+E  CGG+RGG   L AVIPGGSS P +PA  +    MDYD + + GS L
Sbjct: 261 IPLGTPFATLLEM-CGGMRGG-RKLKAVIPGGSSAPVMPADVIMDCTMDYDSISKGGSML 318

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVMD +  ++KA+ RLS FY  ESCGQCTPCREGT WM +V+ R+  G+ +  ++
Sbjct: 319 GSGAVIVMDETVCMVKALDRLSFFYHEESCGQCTPCREGTAWMYKVVHRIENGLGKPEDL 378

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           DLL  V  NI GRTICALGDAAA+P+Q  IK+F    E  I+ 
Sbjct: 379 DLLNSVLGNIAGRTICALGDAAAFPVQSFIKHFGKEFEYHIEH 421


>gi|220934167|ref|YP_002513066.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995477|gb|ACL72079.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 425

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/414 (52%), Positives = 278/414 (67%), Gaps = 7/414 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           FT L   +  +L   +  G +    KIL +   ++ +I EVK S LRGRGGAGF TG+KW
Sbjct: 6   FTTLQFDEPWTLESYLKVGGYQAWKKILTEKMSQEDVIEEVKKSNLRGRGGAGFPTGLKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DESEPGTCKDRDI+R  PH L+EG  I  +AIGA   + Y+R
Sbjct: 66  SFMPRNAPGQ-KYIVCNSDESEPGTCKDRDILRFNPHALVEGMAIGGYAIGATVGYNYMR 124

Query: 127 GEFIRE-RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           GEF+ E  +    AV E Y  G LG +    G D D+    GAGAYICGEETALLESLEG
Sbjct: 125 GEFMDEPYQRFAQAVREAYEQGFLGKDILGSGVDFDLYPTLGAGAYICGEETALLESLEG 184

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPAN GLYG PTT+NN ES++ +P+I+R G  W++  G   + G KLFS+
Sbjct: 185 KKGQPRFKPPFPANFGLYGRPTTINNTESLSSIPSIIREGGDWFAALGIPKSGGEKLFSV 244

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHVN P   E  +   F +L+E   GG+ GG   L AVIPGGSSVP +P   M  A MD
Sbjct: 245 SGHVNKPGNFEIPLGTPFKDLLE-MAGGVLGG-RKLKAVIPGGSSVPVVPGDVMLTANMD 302

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +TD+++A+ R+S FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 303 YDSIAKAGSMLGSGAVIVMDETTDMVRALQRISRFYFSESCGQCTPCREGTGWLYRMLTR 362

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +V+G  +  +++ L +V+  IEGRTICALGDAAA P++  +K+FR   E  I  
Sbjct: 363 IVEGKGRPEDLERLDDVASKIEGRTICALGDAAAMPVRSFVKHFRHEFEYYIQH 416


>gi|288942129|ref|YP_003444369.1| NADH-quinone oxidoreductase subunit F [Allochromatium vinosum DSM
           180]
 gi|288897501|gb|ADC63337.1| NADH-quinone oxidoreductase, F subunit [Allochromatium vinosum DSM
           180]
          Length = 427

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/406 (53%), Positives = 274/406 (67%), Gaps = 6/406 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L+     G +   ++IL +  D   +I EVK S LRGRGGAGF TG+KWSFMP+    +
Sbjct: 22  TLAAYRDLGGYAQWERILRERPDPADLIEEVKRSALRGRGGAGFPTGLKWSFMPRQAPGQ 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N+DE EPGTCKDRDI+R+ PH LIEG  IA + IGA   + Y+RGEF    E  
Sbjct: 82  -KYIVCNSDEGEPGTCKDRDILRYNPHQLIEGMAIAGYCIGATVGYNYIRGEFYEPIERF 140

Query: 137 QAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + AV E YA+GLLG + +  G D D+  H GAGAYICGEETALLES+EGKKGQPR KPPF
Sbjct: 141 EDAVREAYAAGLLGRDIQGSGVDFDLYAHMGAGAYICGEETALLESIEGKKGQPRYKPPF 200

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA VGLYG PTT+NN ES+A +P IL +G  W+   GR NN G KLFS+SGHVN P   E
Sbjct: 201 PAQVGLYGRPTTINNTESLASIPVILEKGGQWFLEQGRPNNGGPKLFSVSGHVNAPNNFE 260

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F  L+E   GG++ G   L AVIPGGSSVP +P   M    MDYD + + GS L
Sbjct: 261 VPLGTPFRALLEM-AGGVKDG-RKLKAVIPGGSSVPVVPGEIMMDVDMDYDSIAKAGSML 318

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIV+   T ++K ++ LS FY HESCGQCTPCREGTGW+ RV++R++ G  +  ++
Sbjct: 319 GSGAVIVIAEGTCMVKVLYNLSHFYMHESCGQCTPCREGTGWLARVIKRILDGQGRAEDL 378

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +LL  V+  I G+TICALGDAAA P+Q  +K++R      I+  HR
Sbjct: 379 ELLDSVAGRIGGKTICALGDAAAMPVQSFLKHYRHEFAYMIEHGHR 424


>gi|119897692|ref|YP_932905.1| putative NADH-ubiquinone oxidoreductase subunit F [Azoarcus sp.
           BH72]
 gi|119670105|emb|CAL94018.1| putative NADH-ubiquinone oxidoreductase chain F [Azoarcus sp. BH72]
          Length = 439

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/421 (52%), Positives = 279/421 (66%), Gaps = 8/421 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAG 59
           ++    I   L G +   L D + RG +  + KI+ +    + II E+KAS LRGRGGAG
Sbjct: 1   MSAHGLILAGLDGDRTWRLQDYIGRGGYSALKKIIAEKIPPETIIAELKASALRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWSFMP+       YL  N+DE EPGT KDRDI+R+ PHT+IEG VIA++A+GA 
Sbjct: 61  FPTGLKWSFMPRSFPGD-KYLACNSDEGEPGTFKDRDILRYNPHTVIEGMVIAAYAMGAT 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177
             + Y+ GE     +  + A+DE   +GL+G N  LG  +  ++  HHG GAYICGEETA
Sbjct: 120 RGYNYIHGEVFELYQRFEEALDEARQAGLVGQNI-LGSEFSFELFAHHGYGAYICGEETA 178

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLES+EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   +   G+ NN 
Sbjct: 179 LLESIEGKKGQPRFKPPFPASYGLYGKPTTINNTETFASVPFIINLGGEGFLNLGKPNNG 238

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLFSISGHVN P   E ++   F EL+E   GG+RGG   L AVIPGGSS P LP   
Sbjct: 239 GTKLFSISGHVNRPGVYEINLGTPFSELLEM-AGGMRGG-RKLKAVIPGGSSAPVLPGDI 296

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    MDYD + + GS LG+ AVIVMD +  ++KA+ RLS FY  ESCGQCTPCREGTGW
Sbjct: 297 MMDCTMDYDSISKAGSMLGSGAVIVMDETVCMVKALERLSYFYFEESCGQCTPCREGTGW 356

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + RV+ R+  G+ +  ++DLL  V+ NI GRTICALGDAA+ P+Q  IK+F    E  I+
Sbjct: 357 LYRVVHRIENGLGRPDDLDLLNSVTGNIMGRTICALGDAASMPVQSFIKHFGAEFEYHIE 416

Query: 418 Q 418
            
Sbjct: 417 N 417


>gi|254496126|ref|ZP_05109025.1| NADH dehydrogenase I, F subunit [Legionella drancourtii LLAP12]
 gi|254354667|gb|EET13303.1| NADH dehydrogenase I, F subunit [Legionella drancourtii LLAP12]
          Length = 428

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/393 (54%), Positives = 272/393 (69%), Gaps = 6/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +LS   S G +    KIL++      II+E+K S LRGRGGAGF TG+KWSFM +  S  
Sbjct: 22  TLSAYESVGGYSAWRKILKEQTSPQLIIDELKTSALRGRGGAGFPTGLKWSFMNR-NSPV 80

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N+DE EPGTCKDR+I+   PH LIEG  IA + +G+   + Y+RGEF    E  
Sbjct: 81  QKYVVCNSDEGEPGTCKDREILALNPHQLIEGMAIAGYVMGSSVGYNYIRGEFWLPYERT 140

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           +AA+ E YA+GLLG N    G D D+  H GAGAYICGEETALL SLEGKKGQPR KPPF
Sbjct: 141 EAALKEAYAAGLLGKNILGSGVDFDLYNHLGAGAYICGEETALLNSLEGKKGQPRFKPPF 200

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PAN GLYG PTT+NN E+ A VP I+ +G  W+   G+ NN GTK FS+SGHVN P   E
Sbjct: 201 PANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGTKCFSVSGHVNKPGNFE 260

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F  L+E   GG++G    + AVIPGGSS+P LP   M G  MDYD +++ GSGL
Sbjct: 261 IPLGTPFKTLLEL-AGGVKGD-RRIKAVIPGGSSMPVLPGDVMMGLDMDYDSIQKAGSGL 318

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVI+MD +T ++ A++R+S FY  ESCGQCTPCREGTGW++R++ R+ +G  +  +I
Sbjct: 319 GSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIKEGHGEPGDI 378

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + L  V+ NIEGRTICALG+AAAWP+Q  +K+F
Sbjct: 379 EKLVNVADNIEGRTICALGEAAAWPVQSFVKHF 411


>gi|58697052|ref|ZP_00372511.1| NADH dehydrogenase I chain F [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536680|gb|EAL59972.1| NADH dehydrogenase I chain F [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 340

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/325 (62%), Positives = 244/325 (75%), Gaps = 3/325 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IFTNL G +   L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 18  MLKEQDKIFTNLNGKETPLLEGAKKRGGWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 77

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A  
Sbjct: 78  STGLKWSFMPKNLPK--AYLVVNADESEPGTCKDRDILRYEPHKLLEGILLASRAISASV 135

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 136 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 195

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 196 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFTSLGKPNNTGT 255

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 256 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSAPLIPKSICD 315

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMD 324
              MD+D L+   SGLGTAAVIVMD
Sbjct: 316 TIEMDFDSLRTAQSGLGTAAVIVMD 340


>gi|256821520|ref|YP_003145483.1| NADH-quinone oxidoreductase subunit F [Kangiella koreensis DSM
           16069]
 gi|256795059|gb|ACV25715.1| NADH-quinone oxidoreductase, F subunit [Kangiella koreensis DSM
           16069]
          Length = 431

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/378 (55%), Positives = 261/378 (69%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II E+K S LRGRGGAGF TG+KWSFMP+    +  Y+V N+DE EPGT KDRDI+R  P
Sbjct: 43  IIEELKLSALRGRGGAGFPTGLKWSFMPRHAPGQ-KYVVCNSDEGEPGTFKDRDILRFNP 101

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H LIEG  I  + +GA   + Y+RGEF    +  + A+ E Y +GLLG N  LG DVD  
Sbjct: 102 HQLIEGMAIGGYVMGATVGYNYMRGEFYEPIDRFEQALKEAYKAGLLGKNI-LGSDVDFD 160

Query: 163 VHH--GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           +H   GAGAYICGEETALLESLEGKKGQPR KPPFPAN GLYG PT VNN ES A VP I
Sbjct: 161 LHSHIGAGAYICGEETALLESLEGKKGQPRFKPPFPANYGLYGRPTNVNNTESYASVPVI 220

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           L +G  W+   G+ENN GTK+FS+SGHVN P   E  +   F +L++   GG++ G   L
Sbjct: 221 LDKGGKWFLELGKENNGGTKIFSVSGHVNKPGNYEIGLGTPFKDLLD-MAGGMKDG-KKL 278

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AVIPGGSS P LPA  M    MDYD + + GS LG+ AVI+MD  TD+++ + R++ FY
Sbjct: 279 KAVIPGGSSAPVLPADVMMDITMDYDAIGKAGSMLGSGAVIIMDEDTDMVEILGRIAHFY 338

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCGQCTPCREGTGWM R++ R+  G  ++ ++  L E++ NI GRTICALGDAAA P
Sbjct: 339 YEESCGQCTPCREGTGWMSRMIHRIANGQGKQSDLKDLDEIAGNIMGRTICALGDAAAMP 398

Query: 401 IQGLIKNFRPLIEERIDQ 418
           +Q  IK F+   E +I+Q
Sbjct: 399 VQSFIKCFKQEFEAKIEQ 416


>gi|289641422|ref|ZP_06473586.1| NADH-quinone oxidoreductase, F subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289508758|gb|EFD29693.1| NADH-quinone oxidoreductase, F subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 442

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/382 (54%), Positives = 267/382 (69%), Gaps = 5/382 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  + + LE G D II  VK SGLRGRGGAGF TGMKWSF+P+   DRPHYLV+NADE E
Sbjct: 28  YQALRQALELGPDDIIKIVKDSGLRGRGGAGFPTGMKWSFIPQ-GDDRPHYLVINADEGE 86

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  +M  +PH+L+EG +IA++A+ AH AFIY+RGE +     L+AAV E Y +G 
Sbjct: 87  PGTCKDAPLMTADPHSLVEGIIIAAYAVRAHRAFIYLRGELVHCGRRLRAAVAEAYRAGY 146

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG +    G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  PT 
Sbjct: 147 LGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPATHGLYASPTV 206

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+IA VP ++RRG  W+   GRE + G K++S+SGHV  P   E  M  T  EL+E
Sbjct: 207 VNNVETIATVPFVIRRGVEWFRSMGRERSPGPKIYSLSGHVTRPGQYEAPMGTTLAELLE 266

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GGIRGG   L A  PGGSS P L A  +    +D++G+ E GS LGTAA+++MD + 
Sbjct: 267 L-AGGIRGG-RRLKAWTPGGSSTPMLTADHL-DVPLDFEGVVEAGSLLGTAAIMIMDETV 323

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           D++K + RL+ FY HESCG+CTPCREGT WM++++ RL +G     ++D L +   NI G
Sbjct: 324 DMLKVVRRLTQFYAHESCGKCTPCREGTTWMVQILSRLERGQGDAEDVDTLVDACDNIFG 383

Query: 388 RTICALGDAAAWPIQGLIKNFR 409
           R  CAL D A  PI   IK FR
Sbjct: 384 RAFCALADGATSPIVSGIKFFR 405


>gi|91789111|ref|YP_550063.1| NADH-quinone oxidoreductase subunit F [Polaromonas sp. JS666]
 gi|91698336|gb|ABE45165.1| NADH dehydrogenase subunit F [Polaromonas sp. JS666]
          Length = 467

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/407 (53%), Positives = 273/407 (67%), Gaps = 12/407 (2%)

Query: 20  LSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           L D  +RG +  + KIL K        D +I EVKAS LRGRGGAGF TG+KWSFMP+  
Sbjct: 48  LKDYEARGGYQALRKILGKDGGEGLTPDQVIAEVKASSLRGRGGAGFPTGLKWSFMPRQF 107

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
             +  YLV N+DE EPGTCKDRDIM++ PH++IEG  IA++A+G    + Y+ GE     
Sbjct: 108 PGQ-KYLVCNSDEGEPGTCKDRDIMQYNPHSVIEGMAIAAYAMGISIGYNYIHGEIFATY 166

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRL 191
              + A+DE  A+GL+G    LG      +H  HG GAYICGEETALLESLEGKKGQPR 
Sbjct: 167 RRFEEALDEARAAGLIGEKI-LGSSFTFQLHASHGFGAYICGEETALLESLEGKKGQPRF 225

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK++S+SG V  P
Sbjct: 226 KPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIYSVSGDVELP 285

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M   F  L+E   GG+R G   L AVIPGGSS P LPA  M    MDYD + + 
Sbjct: 286 GNYEVPMGTPFARLLEL-AGGVRKG-RTLKAVIPGGSSAPVLPASIMMDCTMDYDSIAKA 343

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW+ RV++R+  G  +
Sbjct: 344 GSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLWRVVDRIHNGHGK 403

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++DLL  V+ NI+GRTICALGDAAA P++ +IK+FR   E  I Q
Sbjct: 404 QTDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEAMIPQ 450


>gi|257095314|ref|YP_003168955.1| NADH-quinone oxidoreductase subunit F [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047838|gb|ACV37026.1| NADH-quinone oxidoreductase, F subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 442

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/411 (52%), Positives = 278/411 (67%), Gaps = 9/411 (2%)

Query: 14  GLQGKS---LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSF 68
           GL G +   L+D + RG +  + +ILE+   ++++INEVK S LRGRGGAGF TG+KWSF
Sbjct: 14  GLDGDNAWRLADYVKRGGYTALRRILEEKLPQEYVINEVKKSVLRGRGGAGFPTGLKWSF 73

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           MP+       Y+V N+DE EPGT KDRDI+R++PH++IEG  IA FA+GA   + Y+ GE
Sbjct: 74  MPRSFPGD-KYVVCNSDEGEPGTFKDRDILRYDPHSVIEGMAIAGFAMGAGRGYNYIHGE 132

Query: 129 FIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
                E  + A+DE  A+GLLG +    G++ D+  HHG GAYICGEETALLES+EGKKG
Sbjct: 133 VWEIYERFEEALDEARAAGLLGKDILGSGFNFDLFAHHGYGAYICGEETALLESIEGKKG 192

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           QPR KPPFPA+ GLYG PTT+NN E+ A +P I+  G   Y   G+ NN GTKLFS+SGH
Sbjct: 193 QPRFKPPFPASFGLYGKPTTINNTETFASIPYIINLGGEHYLEAGKANNGGTKLFSVSGH 252

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           VN P   E  +   F  L++   GG+RGG   L   IPGGSS P +PA  M    MDYD 
Sbjct: 253 VNRPGNYEIPLGTPFATLLDM-AGGMRGG-RQLKGCIPGGSSSPVVPAATMMDCTMDYDS 310

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           + + GS LG+ AVIVMD +T ++KA+ RLS FY  ESCGQCTPCREGT W+ +++ R+  
Sbjct: 311 ISKAGSMLGSGAVIVMDETTCMVKALERLSFFYYEESCGQCTPCREGTNWLYKIVHRIEH 370

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           G  +  ++DLL  V+ NI GRTICALGDAA+ P+Q  IK++R      I+ 
Sbjct: 371 GQGRADDLDLLASVTTNIMGRTICALGDAASMPVQSFIKHYRDEFAYHIEH 421


>gi|52842982|ref|YP_096781.1| NADH dehydrogenase I, F subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630093|gb|AAU28834.1| NADH dehydrogenase I, F subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 428

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/403 (52%), Positives = 270/403 (66%), Gaps = 6/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           SLS   S G +    KIL++      II E+K S LRGRGGAGF TG+KWSFM +  S  
Sbjct: 22  SLSTYESIGGYSAWRKILKEQTSPQLIIEELKTSALRGRGGAGFPTGLKWSFMNR-NSPV 80

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N+DE EPGTCKDR+I+   PH LIEG  IA + +GA   + Y+RGEF    E  
Sbjct: 81  QKYVVCNSDEGEPGTCKDREILTLNPHQLIEGMAIAGYVMGATVGYNYIRGEFWLPFERT 140

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           +AA+ E Y +GLLG N    G+D D+  H GAGAYICGEETALL S+EGKKG PR KPPF
Sbjct: 141 EAAIKEAYDAGLLGKNILGSGFDFDLYNHLGAGAYICGEETALLNSIEGKKGMPRFKPPF 200

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PAN GLYG PTT+NN E+ A VP I+ +G  W+   G+ NN G K FS+SGHVN P   E
Sbjct: 201 PANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPGNYE 260

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F  L++   G I+G    + AVIPGGSS+P LP   M G  MDYD +++ GSGL
Sbjct: 261 IPLGTPFKTLLDLAGGVIKG--RKIKAVIPGGSSMPVLPGDVMLGLDMDYDSIQKAGSGL 318

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVI+MD +T ++ A++R+S FY  ESCGQCTPCREGTGW++R++ R++ G  +  ++
Sbjct: 319 GSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIINGHGEPGDV 378

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + L  V+ NIEGRTICALG+AAAWP+Q  +K+F    E  I  
Sbjct: 379 EKLVNVANNIEGRTICALGEAAAWPVQSFVKHFYDEFEYFIKH 421


>gi|302879336|ref|YP_003847900.1| NADH-quinone oxidoreductase, F subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582125|gb|ADL56136.1| NADH-quinone oxidoreductase, F subunit [Gallionella
           capsiferriformans ES-2]
          Length = 421

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/408 (51%), Positives = 272/408 (66%), Gaps = 9/408 (2%)

Query: 19  SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSD 75
           +L + +  G +  + KIL  +   D II EVK S LRGRGGAGF TG+KWSFMP+    D
Sbjct: 17  TLENYLKVGGYQALRKILTEQTSPDAIIAEVKLSALRGRGGAGFPTGLKWSFMPRSFAGD 76

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +  Y+V N+DE EPGTCKD DIM + PH LIEG  IA++ +     + Y+ GE     E 
Sbjct: 77  K--YIVCNSDEGEPGTCKDWDIMLYNPHLLIEGMAIAAYTMNVKTGYNYIHGEIFEAYER 134

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           ++ A +   A+G LG N   LG+  D+  H G GAYICGEETALLES+EGKKGQPR KPP
Sbjct: 135 MEEACELARAAGFLGDNIMGLGFSFDLHNHLGYGAYICGEETALLESIEGKKGQPRFKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A +P I+  G   +   G+ NN GTKLFS+SGHVN P   
Sbjct: 195 FPASFGLYGKPTTINNTETFASIPYIINNGGKAFLELGKPNNGGTKLFSVSGHVNNPGNF 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M   F +L+E   GG+R G   L AVIPGGSS+P L    M    MDYD +++ GSG
Sbjct: 255 EVPMGTPFAKLLEM-AGGVRNG-HKLKAVIPGGSSMPVLTGEVMMDLTMDYDSIQKAGSG 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVIVMD +  +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  +
Sbjct: 313 LGSGAVIVMDETVCMVRALERLSYFYHEESCGQCTPCREGTGWLYRIVHRIEHGQGRPED 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +DLL  + +NI GRTICALG+AA WP+QG++KNFR   E  I ++ RC
Sbjct: 373 LDLLLSIGENIAGRTICALGEAAVWPVQGMLKNFRAEFEYHI-EHKRC 419


>gi|289207898|ref|YP_003459964.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp.
           K90mix]
 gi|288943529|gb|ADC71228.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp.
           K90mix]
          Length = 426

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/415 (52%), Positives = 276/415 (66%), Gaps = 9/415 (2%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMK 65
           F   Y     SL    S G +  ++K+  KG+   + +I EVK S LRGRGGAGF TG+K
Sbjct: 7   FATRYLDDPASLETYKSVGGYQALEKVY-KGKMAPEDVIEEVKTSNLRGRGGAGFPTGLK 65

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    +  Y+V N+DESEPGTCKDR+I+ + PH LIEG  IA +AIGA   + Y+
Sbjct: 66  WSFMPRNTPGQ-KYIVCNSDESEPGTCKDREILMYNPHALIEGMAIAGYAIGATVGYNYM 124

Query: 126 RGEFIRERES-LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF+ E  +   AA+ E Y +G LG +    G D D+    GAGAYICGEETALLESLE
Sbjct: 125 RGEFMDEVNTRFTAALKEAYDAGYLGKDIFGSGVDFDLYPSLGAGAYICGEETALLESLE 184

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG PTT+NN ES+A +P I+R G  W++  G   + G KLFS
Sbjct: 185 GKKGQPRFKPPFPANYGLYGKPTTINNTESLASIPAIIRNGGQWFADLGVPKSGGEKLFS 244

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SGHVN P   E  +   F +L+E   G + G    L AVIPGGSSVP +P   M  A M
Sbjct: 245 VSGHVNKPGNYEIPLGTPFKDLLEMSGGVLNG--RKLKAVIPGGSSVPVVPGDVMLKANM 302

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D + + GS LG+ AVIVMD + D++KA+ R+S FY  ESCGQCTPCREGTGW+ R++ 
Sbjct: 303 DFDSIAQAGSMLGSGAVIVMDETADMVKALQRISRFYFSESCGQCTPCREGTGWLYRMLT 362

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           R+V+G  +  +++ L +V+  IEG TICALGDAAA P++  IK+FR   E  I  
Sbjct: 363 RIVEGQGRPEDLERLDDVASKIEGHTICALGDAAAMPVRSFIKHFRHEFEYYIQH 417


>gi|120609955|ref|YP_969633.1| NADH-quinone oxidoreductase subunit F [Acidovorax citrulli AAC00-1]
 gi|120588419|gb|ABM31859.1| NADH dehydrogenase subunit F [Acidovorax citrulli AAC00-1]
          Length = 452

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/413 (53%), Positives = 281/413 (68%), Gaps = 14/413 (3%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKIL------EKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           GL G   S+ D  +RG +  + KIL         +D +I  VK SGLRGRGGAGF TG+K
Sbjct: 32  GLDGTNWSIKDYEARGGYQALRKILGVDGGEPMTQDQVIATVKESGLRGRGGAGFPTGLK 91

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    +  YLV N+DE EPGTCKDRDI++  PH +IEG +IA+FA+G    + Y+
Sbjct: 92  WSFMPRSFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMIIAAFAMGISVGYNYI 150

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLE 183
            GE  +  E  +AA++E  A+G LG N  LG      +H  HG GAYICGEETALLESLE
Sbjct: 151 HGEIFQTYERFEAALEEARAAGYLGDNI-LGSSFSFQLHAAHGFGAYICGEETALLESLE 209

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN GTK+FS
Sbjct: 210 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNGGTKIFS 269

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V  P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  +    M
Sbjct: 270 VSGDVEKPGNYEIPLGTPFSKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIIMECTM 327

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGWM RV++
Sbjct: 328 DYDSIAKAGSMLGSGAVIVMDDSRSMVESLLRLSYFYSHESCGQCTPCREGTGWMWRVID 387

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+  G+ ++ ++DLL  V+ NI+GRTICALGDAAA P++ +IK+FRP  E  I
Sbjct: 388 RIQHGLGREGDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALI 440


>gi|118602280|ref|YP_903495.1| NADH-quinone oxidoreductase, F subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567219|gb|ABL02024.1| NADH dehydrogenase subunit F [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 422

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/404 (53%), Positives = 270/404 (66%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           F +L   Q  SL    + G +    KIL  E   ++II+E+K SGLRGRGGAGF TG+KW
Sbjct: 6   FKSLIKDQCWSLKTYEANGGYSVWCKILKGELTPEYIIDELKTSGLRGRGGAGFPTGLKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+  SD   Y++ N+DE EPGTCKDRDI+R  PH +IEG  I  F + A   + Y+R
Sbjct: 66  SFMPRH-SDGQKYVICNSDEGEPGTCKDRDILRFNPHAVIEGMAIGGFVMNASVGYNYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF+      + A+ E Y  GLLG N +    + D+  H GAGAYICGEETALLES+EGK
Sbjct: 125 GEFMEPFYRFEDALKEAYKVGLLGRNINNSSVNFDLYTHLGAGAYICGEETALLESIEGK 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPANVGL+G PT +NN ES A VP ILR G  W++  G EN+ G KLFS+S
Sbjct: 185 KGQPRFKPPFPANVGLFGKPTMINNTESFASVPEILRCGGQWFADIGVENSGGCKLFSVS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M   F +L+ K  GG+R G   L AVIPGGSS P L A       MDY
Sbjct: 245 GHVKNPANFEVPMGTPFKDLL-KMAGGMRDG-ARLKAVIPGGSSTPVLTAKVAMNMTMDY 302

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DG+++ GS LG  +VI+MD ST +++ + RL+ FY  ESCGQCTPCREGTGW+ RV++R+
Sbjct: 303 DGIEKAGSMLGAGSVIIMDESTCMVEVLTRLTHFYYDESCGQCTPCREGTGWLYRVLKRI 362

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + G  ++ +IDLL  V   I G TICALGDAAA P++  ++NFR
Sbjct: 363 IDGNGEQTDIDLLLGVQDKIIGNTICALGDAAAMPVESFLRNFR 406


>gi|54295613|ref|YP_128028.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Lens]
 gi|54298767|ref|YP_125136.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Paris]
 gi|148361097|ref|YP_001252304.1| NADH dehydrogenase I subunit F [Legionella pneumophila str. Corby]
 gi|296108427|ref|YP_003620128.1| NADH dehydrogenase I chain F [Legionella pneumophila 2300/99 Alcoy]
 gi|53752552|emb|CAH13984.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Paris]
 gi|53755445|emb|CAH16941.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Lens]
 gi|148282870|gb|ABQ56958.1| NADH dehydrogenase I, F subunit [Legionella pneumophila str. Corby]
 gi|295650329|gb|ADG26176.1| NADH dehydrogenase I chain F [Legionella pneumophila 2300/99 Alcoy]
 gi|307611653|emb|CBX01344.1| NADH dehydrogenase I chain F [Legionella pneumophila 130b]
          Length = 425

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/403 (52%), Positives = 269/403 (66%), Gaps = 6/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           SLS   S G +    KIL++      II E+K S LRGRGGAGF TG+KWSFM +  S  
Sbjct: 19  SLSTYESIGGYSAWRKILKEQTSPQLIIEELKTSALRGRGGAGFPTGLKWSFMNR-NSPV 77

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N+DE EPGTCKDR+I+   PH LIEG  IA + +GA   + Y+RGEF    E  
Sbjct: 78  QKYVVCNSDEGEPGTCKDREILTLNPHQLIEGMAIAGYVMGATVGYNYIRGEFWLPFERT 137

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           +AA+ E Y +GLLG N    G D D+  H GAGAYICGEETALL S+EGKKG PR KPPF
Sbjct: 138 EAAIKEAYDAGLLGKNILGSGVDFDLYNHLGAGAYICGEETALLNSIEGKKGMPRFKPPF 197

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PAN GLYG PTT+NN E+ A VP I+ +G  W+   G+ NN G K FS+SGHVN P   E
Sbjct: 198 PANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPGNYE 257

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F  L++   G I+G    + AVIPGGSS+P LP   M G  MDYD +++ GSGL
Sbjct: 258 IPLGTPFKTLLDLAGGVIKG--RKIKAVIPGGSSMPVLPGDVMLGLDMDYDSIQKAGSGL 315

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVI+MD +T ++ A++R+S FY  ESCGQCTPCREGTGW++R++ R++ G  +  ++
Sbjct: 316 GSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIINGHGEPGDV 375

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + L  V+ NIEGRTICALG+AAAWP+Q  +K+F    E  I  
Sbjct: 376 EKLVNVANNIEGRTICALGEAAAWPVQSFVKHFYDEFEYFIKH 418


>gi|134095026|ref|YP_001100101.1| NADH dehydrogenase I subunit F [Herminiimonas arsenicoxydans]
 gi|133738929|emb|CAL61976.1| NADH-quinone oxidoreductase subunit F (NADH dehydrogenase I subunit
           F) (NDH-1 subunit F) [Herminiimonas arsenicoxydans]
          Length = 431

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/415 (51%), Positives = 278/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L + + RG + ++ +IL +G   D +I E+KAS LRGRGGAGF +G+KWS
Sbjct: 14  LAGLTGDNWGLEEYVKRGGYASLKRILSEGMTSDQVIAEIKASTLRGRGGAGFPSGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMPK    +  YLV N+DE EPGT KDRDI+R+ PH +IEG  IA++A+G    + Y+ G
Sbjct: 74  FMPKNYEGQ-KYLVCNSDEGEPGTFKDRDILRYNPHAVIEGMAIAAYAMGVSVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E   E    + A+++  A+G LG +  LG  Y   +   HG GAYICGEETALLES+EGK
Sbjct: 133 EIFAEYARFEEALEQARAAGFLG-DRILGSAYSFQLHAFHGYGAYICGEETALLESIEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ GLYG PTT+NN E+ A VP I + GA  Y+  G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASYGLYGKPTTINNTETFAAVPFIFQVGADAYAAMGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F EL+ K  GG+RGG   L AVIPGGSSVP +    M    MDY
Sbjct: 252 GDVENPGNYEIPLGTPFAELL-KLAGGVRGG-KKLKAVIPGGSSVPVVKGDLMMATDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+
Sbjct: 310 DSVAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  +  ++D+L  ++ NI+GRTICALGDAAA P++ +I NFR   E  I+  H
Sbjct: 370 ENGQGRAEDLDMLNSIADNIQGRTICALGDAAAMPVRAMILNFREEFEYHIEHKH 424


>gi|160900607|ref|YP_001566189.1| NADH-quinone oxidoreductase subunit F [Delftia acidovorans SPH-1]
 gi|160366191|gb|ABX37804.1| NADH-quinone oxidoreductase, F subunit [Delftia acidovorans SPH-1]
          Length = 452

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/419 (52%), Positives = 282/419 (67%), Gaps = 11/419 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60
           +I+ +L G    S+ D  +RG +  + KIL K       +D +I  VK SGLRGRGGAGF
Sbjct: 29  QIYADLTGAN-WSIKDYEARGGYQALRKILGKDGSEGLTQDQVIATVKESGLRGRGGAGF 87

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+    + H LV N+DE EPGTCKDRDI+ H PH +IEG +IA++A+G   
Sbjct: 88  PTGLKWSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILVHNPHIVIEGMIIAAYAMGISL 146

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            + Y+ GE     E  +AA++E  A+G LG N     +   +  HHG GAYICGEETALL
Sbjct: 147 GYNYIHGEIFEAYERFEAALEEARAAGYLGDNIMGSSFSFQLHAHHGFGAYICGEETALL 206

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN GT
Sbjct: 207 ESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGGT 266

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS+SG VN P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  + 
Sbjct: 267 KIFSVSGDVNLPGNYEVPLGTPFSKLLEL-AGGVRTG-RKLKAVIPGGSSSPVLPADIIM 324

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDYD + + GS LG+ AVIVMD S D+++++ RLS FY+HESCGQCTPCREGTGW+ 
Sbjct: 325 ECTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLLRLSYFYQHESCGQCTPCREGTGWLW 384

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RV+ R+  G  +  +I+LL  VS NI GRTICALGDAAA P++ +IK+FR   E +I  
Sbjct: 385 RVVNRIEHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQN 443


>gi|77166018|ref|YP_344543.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus oceani ATCC
           19707]
 gi|254436308|ref|ZP_05049814.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani
           AFC27]
 gi|76884332|gb|ABA59013.1| NADH dehydrogenase subunit F [Nitrosococcus oceani ATCC 19707]
 gi|207087998|gb|EDZ65271.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani
           AFC27]
          Length = 427

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/381 (56%), Positives = 271/381 (71%), Gaps = 5/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+E+KASGLRGRGGAGF TG+KWSFMPK  +    Y+V N+DE EPGT KDRDI+R+ P
Sbjct: 45  IIDEIKASGLRGRGGAGFPTGLKWSFMPKDLAGI-KYIVCNSDEGEPGTFKDRDILRYNP 103

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG  IA +AIGA   + Y RGEF    E  +AA++E Y +GLLG N    G D D+
Sbjct: 104 HQLIEGMAIAGYAIGAAVGYNYTRGEFSEPIERFEAALEEAYQAGLLGKNILASGVDFDL 163

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
             H GAGAYICGEETALLESLEGKKG PR KPPFPA  GLYG PTT+NN E++A VP IL
Sbjct: 164 YSHPGAGAYICGEETALLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTETLASVPVIL 223

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +G  W+   G   + GTK+FS+SGHVN P   E  M I+F +L+E   GG+R G + L 
Sbjct: 224 EKGGQWFLKLGTPTSGGTKIFSVSGHVNRPGNYEVPMGISFKDLLEL-AGGMRNG-NALK 281

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVIPGG+SVP +PA  +  A MDYD L + GS LG  +VI+MD +T +++A+ R+S FY+
Sbjct: 282 AVIPGGTSVPVMPAEAIMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYR 341

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCGQCTPCREGTGW+ RV+ R+ +G   + ++D +  V++NI+G TICALGDAAA P+
Sbjct: 342 EESCGQCTPCREGTGWLYRVVHRIEQGQGTQEDLDKVVNVAENIDGHTICALGDAAAAPV 401

Query: 402 QGLIKNFRPLIEERIDQYHRC 422
              IK+FR   +  ID + RC
Sbjct: 402 ISFIKHFRDEFQYHID-HKRC 421


>gi|152980581|ref|YP_001353157.1| NADH dehydrogenase I chain F [Janthinobacterium sp. Marseille]
 gi|151280658|gb|ABR89068.1| NADH dehydrogenase I chain F [Janthinobacterium sp. Marseille]
          Length = 431

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/413 (51%), Positives = 279/413 (67%), Gaps = 10/413 (2%)

Query: 14  GLQGKS--LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           GL G +  L + + RG + ++ +IL +G   + +I EVKAS LRGRGGAGF +G+KWSFM
Sbjct: 16  GLTGDNWGLEEYVKRGGYASLKRILSEGMTPEQVIAEVKASTLRGRGGAGFPSGLKWSFM 75

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
           PK  + +  YLV N+DE EPGT KDRDI+R+ PH++IEG  IA++A+G    + Y+ GE 
Sbjct: 76  PKNFAGQ-KYLVCNSDEGEPGTFKDRDILRYNPHSVIEGMTIAAYAMGVSVGYNYIHGEI 134

Query: 130 IRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKG 187
             E +  + A+++  A+G LG N  LG      +H  HG GAYICGEETALLESLEGKKG
Sbjct: 135 FAEYDRFEEALEQARAAGFLGDNI-LGSTHSFQLHAFHGFGAYICGEETALLESLEGKKG 193

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           QPR KPPFPA+ GLYG PTT+NN E+ A VP I + GA  Y+  G+ NN GTK+FS+SG 
Sbjct: 194 QPRFKPPFPASYGLYGKPTTINNTETFAAVPFIFQVGAEAYAAIGKPNNGGTKIFSVSGD 253

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V  P   E  +   F EL+ K  GG+RGG   L AVIPGGSSVP +    M    MDYD 
Sbjct: 254 VENPGNYEIPLGTPFAELL-KLAGGVRGG-KKLKAVIPGGSSVPVVKGDLMMATDMDYDS 311

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           + + GS LG+ AVIVMD +  ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  
Sbjct: 312 VAKAGSMLGSGAVIVMDETRCMVKALLRLSYFYYEESCGQCTPCREGTGWLYRMVHRIEN 371

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           G  +  ++D+L  V+ NI+GRTICALGDAAA P++ +I+ FR      I+  H
Sbjct: 372 GQGRPEDLDMLNSVADNIQGRTICALGDAAAMPVRAMIQQFREEFVYHIEHKH 424


>gi|326316104|ref|YP_004233776.1| NADH-quinone oxidoreductase subunit F [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372940|gb|ADX45209.1| NADH-quinone oxidoreductase, F subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 452

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/413 (53%), Positives = 279/413 (67%), Gaps = 14/413 (3%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKIL------EKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           GL G   S+ D  +RG +  + KIL         +D +I  VK SGLRGRGGAGF TG+K
Sbjct: 32  GLDGTNWSIKDYEARGGYQALRKILGTDGGEPMTQDQVIATVKESGLRGRGGAGFPTGLK 91

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    +  YLV N+DE EPGTCKDRDI++  PH +IEG +IA+FA+G    + Y+
Sbjct: 92  WSFMPRSFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMIIAAFAMGISVGYNYI 150

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLE 183
            GE  +  E  + A++E  A+G LG N  LG      +H  HG GAYICGEETALLESLE
Sbjct: 151 HGEIFQTYERFEEALEEARAAGYLGDNI-LGSSFSFQLHAAHGFGAYICGEETALLESLE 209

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN GTK+FS
Sbjct: 210 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNGGTKIFS 269

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V  P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  +    M
Sbjct: 270 VSGDVEKPGNYEVPLGTPFAKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIIMECTM 327

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGWM RV++
Sbjct: 328 DYDSIAKAGSMLGSGAVIVMDDSRSMVESLLRLSYFYSHESCGQCTPCREGTGWMWRVID 387

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+  G  ++ ++DLL  V+ NI+GRTICALGDAAA P++ +IK+FRP  E  I
Sbjct: 388 RIQHGQGREGDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALI 440


>gi|319794663|ref|YP_004156303.1| NADH-quinone oxidoreductase, f subunit [Variovorax paradoxus EPS]
 gi|315597126|gb|ADU38192.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus EPS]
          Length = 446

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/419 (52%), Positives = 284/419 (67%), Gaps = 9/419 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
           + +I+  L G   + L+D  +RG +  + KIL +G   D +I EVKASGLRGRGGAGF T
Sbjct: 25  EPQIYAGLNGTNWR-LADYEARGGYKALRKILTEGLTPDQVIAEVKASGLRGRGGAGFPT 83

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+    +  YLV N+DE EPGTCKDRDI++  PH +IEG  IA++A+G    +
Sbjct: 84  GLKWSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGISVGY 142

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLE 180
            Y+ GE  +  +  + A++E  A+G LG +  +G  Y+  +   HG GAYICGEETALLE
Sbjct: 143 NYIHGEIFQSYDRFEEALEEARAAGYLG-DKIMGSTYNFQLHAAHGFGAYICGEETALLE 201

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   Y   G+ NN GTK
Sbjct: 202 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINNGGPAYLECGKPNNGGTK 261

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           ++S+SG V  P   E  M   F +L+E  CGG+R G   L AVIPGGSS P LPA  M  
Sbjct: 262 IYSVSGDVELPGNYEVPMGTPFSKLLEL-CGGVRKG-RTLKAVIPGGSSSPVLPADIMMA 319

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 320 CTMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLKRLSYFYMHESCGQCTPCREGTGWLYR 379

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V++R+  G  +  ++DLL  V+ NI+GRTICALGDAAA P++ +IK+FR   E  I  Y
Sbjct: 380 VVDRIHNGQGRATDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEALIPGY 438


>gi|160872482|ref|ZP_02062614.1| NADH oxidoreductase (quinone), f subunit [Rickettsiella grylli]
 gi|159121281|gb|EDP46619.1| NADH oxidoreductase (quinone), f subunit [Rickettsiella grylli]
          Length = 426

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/421 (51%), Positives = 281/421 (66%), Gaps = 7/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFST 62
            D  F  L+  +  SL +    G ++  ++IL++    + II E+K S LRGRGGAGF T
Sbjct: 3   NDICFRTLHFDKPWSLENYRRVGGYEVWERILKEKTPPEQIIAELKRSCLRGRGGAGFPT 62

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSF+ +    +  Y++ N+DE EPGTCKDRDI+R  PH LIEG  IA + +GA   +
Sbjct: 63  GLKWSFITRNAPGQ-KYILCNSDEGEPGTCKDRDILRFNPHQLIEGMAIAGYVMGATVGY 121

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+RGE+    E  + A+ E Y +G LG N    G+D  +  H GAGAYICGEETAL+ES
Sbjct: 122 NYIRGEYDEPFERCETALAEAYEAGWLGENIIGSGFDFQLYNHRGAGAYICGEETALMES 181

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKG PR KPPFPAN GLYGCPTT+NN E++A VP IL++G  W+   G+ NN G KL
Sbjct: 182 LEGKKGFPRFKPPFPANYGLYGCPTTINNTETLASVPVILQKGGQWFLELGKPNNGGCKL 241

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS++GHVN P   E  + I F EL+    GG++     L AVIPGGSS+P L A  M   
Sbjct: 242 FSVTGHVNKPGNYEVPLGIPFKELLAL-AGGMKAN-RKLKAVIPGGSSMPVLTAEAMWNT 299

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +T ++K + R++ FYK ESCGQCTPCREGTGWM RV
Sbjct: 300 AMDYDSIIKAGSMLGSGAVIVMDETTCMVKVLTRIAHFYKEESCGQCTPCREGTGWMWRV 359

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+ +G AQ+ ++DLL  V+  I G TICALGDAAA P+Q  IK+FR    E I ++ R
Sbjct: 360 LHRIEQGHAQRSDLDLLESVAGRIMGHTICALGDAAAMPVQSFIKHFRSEFIEHI-EHKR 418

Query: 422 C 422
           C
Sbjct: 419 C 419


>gi|239816478|ref|YP_002945388.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus S110]
 gi|239803055|gb|ACS20122.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus S110]
          Length = 446

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/419 (52%), Positives = 284/419 (67%), Gaps = 9/419 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
           + +I+  L G   + L+D  +RG +  + KIL +G   D +I EVKASGLRGRGGAGF T
Sbjct: 25  EPQIYAGLNGTNWR-LADYEARGGYKALRKILTEGLTPDQVIAEVKASGLRGRGGAGFPT 83

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+    +  YLV N+DE EPGTCKDRDI++  PH +IEG  IA++A+G    +
Sbjct: 84  GLKWSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGISVGY 142

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLE 180
            Y+ GE  +  +  + A++E  A+G LG +  +G  Y+  +   HG GAYICGEETALLE
Sbjct: 143 NYIHGEIFQSYDRFEEALEEARAAGYLG-DKIMGSTYNFQLHAAHGFGAYICGEETALLE 201

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   Y   G+ NN GTK
Sbjct: 202 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINNGGQAYLECGKPNNGGTK 261

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           ++S+SG V  P   E  M   F +L+E  CGG+R G   L AVIPGGSS P LPA  M  
Sbjct: 262 IYSVSGDVELPGNYEVPMGTPFSKLLEL-CGGVRKG-RTLKAVIPGGSSSPVLPASIMME 319

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 320 CTMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLRRLSYFYMHESCGQCTPCREGTGWLYR 379

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V++R+  G  +  ++DLL  V+ NI+GRTICALGDAAA P++ +IK+FR   E  I  Y
Sbjct: 380 VVDRIHNGQGRASDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEALIPGY 438


>gi|292493663|ref|YP_003529102.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus
           Nc4]
 gi|291582258|gb|ADE16715.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus
           Nc4]
          Length = 427

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/381 (56%), Positives = 267/381 (70%), Gaps = 5/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II EVKASGLRGRGGAGF TG+KWSFMP+       Y+V N+DE EPGT KDRDIMR+ P
Sbjct: 45  IIEEVKASGLRGRGGAGFPTGLKWSFMPQNLPGT-KYIVCNSDEGEPGTFKDRDIMRYNP 103

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG  IA +AIGA   + Y+RGEF+   +  +AA++E Y +GLLG N    G D D+
Sbjct: 104 HQLIEGMAIAGYAIGATAGYNYIRGEFVEPIDRFEAALEEAYEAGLLGKNILGSGIDFDL 163

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
             H GAGAYICGEETALLESLEGKKG PR KPPFPA  GLYG PTT+NN ES+A VP IL
Sbjct: 164 YSHPGAGAYICGEETALLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTESLASVPVIL 223

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +G  W+   G   + GTK+FS+SGHVN P   E  M   F +L+E   GG+R G + L 
Sbjct: 224 EKGGQWFLKLGTPTSGGTKIFSVSGHVNRPGNYEVPMGTPFKDLLEL-AGGMRNG-NALK 281

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVIPGG+SVP +PA  +  A MDYD L + GS LG  +VI+MD +T +++A+ R+S FY 
Sbjct: 282 AVIPGGTSVPVMPAEAIMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYY 341

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCGQCTPCREGTGW+ RV+ R+  G   + ++D L  V++NI+G TICALGDAAA P+
Sbjct: 342 EESCGQCTPCREGTGWLYRVVRRIEHGQGTQEDLDKLVNVAQNIDGHTICALGDAAAAPV 401

Query: 402 QGLIKNFRPLIEERIDQYHRC 422
              I++FR   +  ID + RC
Sbjct: 402 ISFIQHFRDEFQYHID-HKRC 421


>gi|17546776|ref|NP_520178.1| NADH dehydrogenase I chain F [Ralstonia solanacearum GMI1000]
 gi|17429076|emb|CAD15764.1| probable nadh dehydrogenaseI(chain f) oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
          Length = 431

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/402 (52%), Positives = 276/402 (68%), Gaps = 8/402 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D + RG +  + +IL +    + II +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E   E +  + A++E  A+GLLG N    G++  +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWNEYKLFEQALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+FS+SG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+RGG   L AVIPGGSS P +PA  M  + MDYD
Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV++R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++
Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412


>gi|299066338|emb|CBJ37522.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           CMR15]
          Length = 431

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/402 (52%), Positives = 276/402 (68%), Gaps = 8/402 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D + RG +  + +IL +    + II +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E   E +  + A++E  A+GLLG N    G++  +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWNEYKIFEQALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+FS+SG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+RGG   L AVIPGGSS P +PA  M  + MDYD
Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV++R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++
Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412


>gi|294340856|emb|CAZ89251.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           (NDH-1, chain F) [Thiomonas sp. 3As]
          Length = 442

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/411 (52%), Positives = 276/411 (67%), Gaps = 10/411 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L   ++R  +  + KIL +G   + +I EVKAS LRGRGGAGF TG+KWS
Sbjct: 25  LAGLNGENWDLQGYLARDGYQALRKILTEGWTPEQVIAEVKASALRGRGGAGFPTGLKWS 84

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH +IEG  IA+FA+G    + Y+ G
Sbjct: 85  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHAVIEGMTIAAFAMGITVGYNYIHG 143

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGK 185
           E   + +  + A+ +   +G LG N  LG +    +H  HG GAYICGEETALLESLEGK
Sbjct: 144 EIFEDYDRFEEALRQARDAGYLGDNI-LGSNFSFQLHAAHGFGAYICGEETALLESLEGK 202

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK++S+S
Sbjct: 203 KGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKIYSVS 262

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  M   F +L+E   GG+R G + L AVIPGGSS P LPA  M    MDY
Sbjct: 263 GDVAKPGNYEVPMGTPFAKLLEL-AGGMREGRE-LKAVIPGGSSAPVLPASIMMDCTMDY 320

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIV++ +  ++K++ RLS FY+HESCGQCTPCREGTGW+ RV+ R+
Sbjct: 321 DSIAKAGSMLGSGAVIVLNDTRCMVKSLMRLSYFYQHESCGQCTPCREGTGWLYRVVHRI 380

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             G  +  ++DLL  VS NI GRTICALGDAAA P++  +K+FRP  E  I
Sbjct: 381 ENGQGRMEDLDLLNSVSDNIAGRTICALGDAAAMPVKSFVKHFRPEFEHHI 431


>gi|222110091|ref|YP_002552355.1| NADH-quinone oxidoreductase subunit F [Acidovorax ebreus TPSY]
 gi|221729535|gb|ACM32355.1| NADH-quinone oxidoreductase, F subunit [Acidovorax ebreus TPSY]
          Length = 453

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/417 (52%), Positives = 281/417 (67%), Gaps = 14/417 (3%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65
           GL G   SL D  +RG +  + K+L K       +D +I  +K SGLRGRGGAGF TG+K
Sbjct: 32  GLNGSNWSLKDYEARGGYQALRKLLGKDGGEGLTQDQVIATMKESGLRGRGGAGFPTGLK 91

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    +  YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G    + Y+
Sbjct: 92  WSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISVGYNYI 150

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLE 183
            GE  +  E  +AA++E  A+G LG N  LG  +   +  HHG GAYICGEETALLESLE
Sbjct: 151 HGEIFQVYERFEAALEEARAAGYLGDNI-LGSSFSFQLHAHHGFGAYICGEETALLESLE 209

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS
Sbjct: 210 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIFS 269

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V  P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  +    M
Sbjct: 270 VSGDVERPGNYEVPLGTPFAKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIIMECTM 327

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD + + GS LG+ AVIVMD S ++++++ RLS FY HESCGQCTPCREGTGWM RV+ 
Sbjct: 328 DYDSIAKAGSMLGSGAVIVMDDSRNMVESLLRLSYFYAHESCGQCTPCREGTGWMWRVIN 387

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R+     ++ ++DLL  V+ NI+GRTICALGDAAA P++ ++K+FRP  E  I   H
Sbjct: 388 RIQHEAGRESDLDLLNSVADNIQGRTICALGDAAAMPVRAMLKHFRPEFEALIRNAH 444


>gi|56478181|ref|YP_159770.1| NADH dehydrogenase I, chain F [Aromatoleum aromaticum EbN1]
 gi|56314224|emb|CAI08869.1| NADH dehydrogenase I, chain F [Aromatoleum aromaticum EbN1]
          Length = 437

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/403 (53%), Positives = 271/403 (67%), Gaps = 8/403 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L D + RG +  + KI+ +    + +I E+KAS LRGRGGAGF TG+KWSFMP+      
Sbjct: 19  LQDYIGRGGYSALKKIIAEKIPAETVIAELKASSLRGRGGAGFPTGLKWSFMPRSFPGA- 77

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL  N+DE EPGT KDRDI+R+ PH++IEG  IA++A+G    + Y+ GE     E  +
Sbjct: 78  KYLACNSDEGEPGTFKDRDILRYNPHSVIEGMTIAAYAMGCERGYNYIHGEIFEIYERFE 137

Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A+ E   +GLLG    LG D   ++  HHG GAYICGEETALLES+EGKKGQPR KPPF
Sbjct: 138 EALAEAREAGLLG-QKILGSDFSFELFAHHGYGAYICGEETALLESIEGKKGQPRFKPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN E+ A VP I+  G   +   G+ NN GTKLFSISGHVN P   E
Sbjct: 197 PASYGLYGKPTTINNTETFASVPFIINMGGESFLNLGKPNNGGTKLFSISGHVNRPGNYE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M   F EL+E   GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS L
Sbjct: 257 IGMGTPFAELLEM-AGGMRGG-GKLKAVIPGGSSSPVLPAAVMMDCTMDYDSIAKAGSML 314

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVMD +T ++KA+ RLS FY  ESCGQCTPCREGTGW+ RV+ R+  G+ ++ ++
Sbjct: 315 GSGAVIVMDETTCMVKALERLSYFYFEESCGQCTPCREGTGWLYRVVHRIENGLGRRDDL 374

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           DLL  V+ NI GRTICALGDAA+ P+Q  IK+F    E  I+ 
Sbjct: 375 DLLNSVTGNIMGRTICALGDAASMPVQSFIKHFGSEFEYHIEN 417


>gi|291613543|ref|YP_003523700.1| NADH-quinone oxidoreductase, F subunit [Sideroxydans lithotrophicus
           ES-1]
 gi|291583655|gb|ADE11313.1| NADH-quinone oxidoreductase, F subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 420

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/408 (52%), Positives = 280/408 (68%), Gaps = 9/408 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + +  G +  + K+L +    + II EVKASGLRGRGGAGF TG+KWSFMP+     
Sbjct: 16  NLDNYIKAGGYQALRKVLAEKLSPEAIIAEVKASGLRGRGGAGFPTGLKWSFMPRNYQGD 75

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YLV N+DE EPGTCKDRDI+R+ PH LIEG  IA++ +     + YV GE     E +
Sbjct: 76  -KYLVCNSDEGEPGTCKDRDILRYNPHLLIEGMAIAAYTMDVKTGYNYVHGEIFEAYERM 134

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLESLEGKKGQPRLKPP 194
           + A +E   +G LG N  +G+D +  +H+  G GAY+CGEETALLES+EGKKGQPR KPP
Sbjct: 135 EEACEEARKAGYLGKNI-MGFDFEFDLHNHMGYGAYVCGEETALLESIEGKKGQPRFKPP 193

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A +P I+R G   ++G G  N+ G KLFS+SGHVN P   
Sbjct: 194 FPASFGLYGKPTTINNTETFASIPYIIREGGQKFAGLGVTNSGGVKLFSVSGHVNNPGNF 253

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F +L+E   GG+R G   L AVIPGGSS+P LPA  M G  MD+D +++ GS 
Sbjct: 254 EMPLGTPFMKLLEM-AGGVRNG-HKLKAVIPGGSSMPVLPAEIMMGLNMDFDSIQKAGSY 311

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IVMD +T ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  +
Sbjct: 312 LGTGAIIVMDETTCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIIHRIEHGEGRPED 371

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +DLL ++  NI GRTICALGDAAAWP+QG +K++R   E  I ++ RC
Sbjct: 372 LDLLLDLCGNIAGRTICALGDAAAWPVQGFLKHYRAEFEYHI-EHKRC 418


>gi|254491610|ref|ZP_05104789.1| NADH oxidoreductase (quinone), F subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463088|gb|EEF79358.1| NADH oxidoreductase (quinone), F subunit [Methylophaga thiooxydans
           DMS010]
          Length = 425

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/380 (53%), Positives = 264/380 (69%), Gaps = 6/380 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ +VK S LRGRGGAGF TG+KWSFMP+       Y+V N+DE EPGTCKDRDI+R+ P
Sbjct: 44  ILEQVKNSALRGRGGAGFPTGLKWSFMPRRMPGE-KYIVCNSDEGEPGTCKDRDILRYNP 102

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--D 160
           H LIEG +IA + IGA   + Y+RGEF    E  +AA+ E   +GLLG N  LG D   +
Sbjct: 103 HQLIEGMIIAGYTIGAGTGYNYIRGEFYEPIERFEAALKEAREAGLLGKNI-LGSDFHFE 161

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           +  H GAGAYICGEETALLESLEGKKGQPR KPPFPA  GLYG PTT+NN E++A +P I
Sbjct: 162 LHTHIGAGAYICGEETALLESLEGKKGQPRYKPPFPAGYGLYGRPTTINNTETLASIPVI 221

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           L+ G  W+   G +NN G+K+F ++GHVN P   E  +   F EL+E   GG+R G ++L
Sbjct: 222 LQYGGDWFHEIGTQNNGGSKIFCMTGHVNKPGNYEVPLGTPFSELLEL-AGGVRDG-NSL 279

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AVIPGG+S P +P  +M    M YDG+ + GS LG  +VI+MD  T ++KA+ R++ FY
Sbjct: 280 KAVIPGGTSTPVVPGDKMLQLDMSYDGIGKGGSMLGAGSVIIMDEKTCMVKALKRIAYFY 339

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCGQCTPCREGTGW+ RV++R+ +G  ++ ++D L  V++NI G TICALGDAAA P
Sbjct: 340 YEESCGQCTPCREGTGWLYRVIKRIEEGQGKQEDLDRLVNVAENINGNTICALGDAAAAP 399

Query: 401 IQGLIKNFRPLIEERIDQYH 420
           +   IK+FR   +  ID  H
Sbjct: 400 VMSFIKHFRDEFQYHIDHGH 419


>gi|83746302|ref|ZP_00943355.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551]
 gi|207723878|ref|YP_002254276.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum MolK2]
 gi|207742740|ref|YP_002259132.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum
           IPO1609]
 gi|83727052|gb|EAP74177.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551]
 gi|206589083|emb|CAQ36045.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum MolK2]
 gi|206594134|emb|CAQ61061.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum
           IPO1609]
          Length = 431

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/402 (52%), Positives = 275/402 (68%), Gaps = 8/402 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E   E +  + A++E  A+G LG N    G++  +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+FS+SG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+RGG   L AVIPGGSS P +PA  M  + MDYD
Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV++R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++
Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412


>gi|34496401|ref|NP_900616.1| NADH-ubiquinone oxidoreductase, chain F [Chromobacterium violaceum
           ATCC 12472]
 gi|34102254|gb|AAQ58620.1| NADH-ubiquinone oxidoreductase, chain F [Chromobacterium violaceum
           ATCC 12472]
          Length = 431

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/402 (51%), Positives = 270/402 (67%), Gaps = 6/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L   ++RG +  + +IL+    ++ +I EVK SGLRGRGGAGF TG+KWSFMP+      
Sbjct: 23  LDAYVARGGYQALRRILDSKMTQEDVIAEVKNSGLRGRGGAGFPTGLKWSFMPRSFPGD- 81

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V N DE EPGT KDRDI+R+ PH+LIEG +IA +A+G    + Y+ GE   +    +
Sbjct: 82  KYVVCNTDEGEPGTFKDRDIIRYNPHSLIEGMIIAGYAMGTKAGYNYIHGEIFEDYLLFE 141

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E   +G LG N    G++ ++  HHG GAYICGEETALLESLEGKKGQPR KPPFP
Sbjct: 142 EALEEARKAGFLGQNILGSGFNFELYAHHGYGAYICGEETALLESLEGKKGQPRFKPPFP 201

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GLYG PTT+NN ES A VP I+R GA  +   G+ NN GTKLFS+SGHVN P   E 
Sbjct: 202 ASFGLYGKPTTINNTESFASVPFIIRDGAQTFLEKGKPNNGGTKLFSVSGHVNRPGNYEI 261

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           ++   F EL+E   GG+R G   L AVIPGGSS P LPA  M    MDYD + + GS LG
Sbjct: 262 ALGTPFSELLEM-AGGMRDG-KKLKAVIPGGSSAPVLPADIMMQCTMDYDSIAKAGSMLG 319

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           + AVIVM+    ++KA+ RL+ FY  ESCGQCTPCREGTGW+ +V+ R+  G  +K +++
Sbjct: 320 SGAVIVMNEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYKVIHRIASGQGRKGDLE 379

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           LL  V  N+ GRTICAL DAA +P++   K+FR   E  I+ 
Sbjct: 380 LLDSVGNNMAGRTICALADAAVFPVRSFTKHFRNEFEYAIEH 421


>gi|241663479|ref|YP_002981839.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12D]
 gi|309781857|ref|ZP_07676590.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA]
 gi|240865506|gb|ACS63167.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12D]
 gi|308919498|gb|EFP65162.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA]
          Length = 431

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/402 (52%), Positives = 275/402 (68%), Gaps = 8/402 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E   E +  + A++E  A+G LG N    G++  +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+FS+SG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+RGG   L AVIPGGSS P +PA  M  + MDYD
Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV++R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWLYRVVDRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++
Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412


>gi|319787438|ref|YP_004146913.1| NADH-quinone oxidoreductase, F subunit [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465950|gb|ADV27682.1| NADH-quinone oxidoreductase, F subunit [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 456

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/409 (51%), Positives = 275/409 (67%), Gaps = 8/409 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFS 61
           +   ++T L+  +  S  + +  G +  + +IL +      ++  VK SGLRGRGGAGF 
Sbjct: 20  EHQAVYTTLHFDKPWSYENYLKTGGYQALRRILTEKIPPADVVEMVKQSGLRGRGGAGFP 79

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMPK   D   Y++ N+DESEPGT KDRDI+R+ PH +IEG  IA +A G+   
Sbjct: 80  TGLKWSFMPK--GDMQKYILCNSDESEPGTAKDRDILRYNPHAVIEGMAIACYATGSTVG 137

Query: 122 FIYVRGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           + Y+RGEF  E  E L+ A+ + Y  G LG +    G D+DI    GAGAYICGEETAL+
Sbjct: 138 YNYLRGEFHHEPFEHLEEALADAYKHGWLGKDILGSGVDIDIYNALGAGAYICGEETALM 197

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R GA W+   G+ NN G 
Sbjct: 198 ESLEGKKGQPRFKPPFPANFGLYGKPTTINNTETYASVPAIVRNGAEWFMNLGKPNNGGC 257

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS+SGHV  P   E  +   F EL++  CGGIR G + + AVIPGGSS+P LP   M 
Sbjct: 258 KIFSVSGHVARPGNHEIRLGTPFSELLDL-CGGIRNG-NRIKAVIPGGSSMPVLPGEVMM 315

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
           G  MDYD +++ GSGLG+ AVIVMD +T +++A  R++ FY  ESCGQCTPCREGTGWM 
Sbjct: 316 GLTMDYDSIQKAGSGLGSGAVIVMDHTTCMVRACQRIARFYYKESCGQCTPCREGTGWMY 375

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R++ R+    A   ++ +L   +  IEG TICA G+AAAWP+QG +++F
Sbjct: 376 RMLTRIANLEATLDDLHMLRTAAGQIEGHTICAFGEAAAWPVQGFLRHF 424


>gi|187929288|ref|YP_001899775.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12J]
 gi|187726178|gb|ACD27343.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12J]
          Length = 431

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/402 (52%), Positives = 275/402 (68%), Gaps = 8/402 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E   E +  + A++E  A+G LG N    G++  +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+FS+SG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+RGG   L AVIPGGSS P +PA  M  + MDYD
Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV++R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++
Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412


>gi|121593382|ref|YP_985278.1| NADH-quinone oxidoreductase subunit F [Acidovorax sp. JS42]
 gi|120605462|gb|ABM41202.1| NADH dehydrogenase subunit F [Acidovorax sp. JS42]
          Length = 453

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/417 (52%), Positives = 281/417 (67%), Gaps = 14/417 (3%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65
           GL G   SL D  +RG +  + K+L K       +D +I  +K SGLRGRGGAGF TG+K
Sbjct: 32  GLNGSNWSLKDYEARGGYQALRKLLGKDGGEGLTQDQVIATMKESGLRGRGGAGFPTGLK 91

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    +  YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G    + Y+
Sbjct: 92  WSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISVGYNYI 150

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLE 183
            GE  +  E  +AA++E  A+G LG N  LG  +   +  HHG GAYICGEETALLESLE
Sbjct: 151 HGEIFQVYERFEAALEEARAAGYLGDNI-LGSSFSFQLHAHHGFGAYICGEETALLESLE 209

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS
Sbjct: 210 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIFS 269

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V  P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  +    M
Sbjct: 270 VSGDVERPGNYEVPLGTPFAKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIIMECTM 327

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD + + GS LG+ AVIVMD S ++++++ RLS FY HESCGQCTPCREGTGWM RV+ 
Sbjct: 328 DYDSIAKAGSMLGSGAVIVMDDSRNMVESLLRLSYFYAHESCGQCTPCREGTGWMWRVIN 387

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R+     ++ ++DLL  V+ NI+GRTICALGD+AA P++ ++K+FRP  E  I   H
Sbjct: 388 RIQHEAGRESDLDLLNSVADNIQGRTICALGDSAAMPVRAMLKHFRPEFEALIRNAH 444


>gi|312796896|ref|YP_004029818.1| NADH-quinone oxidoreductase chain F [Burkholderia rhizoxinica HKI
           454]
 gi|312168671|emb|CBW75674.1| NADH-quinone oxidoreductase chain F (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 441

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/414 (50%), Positives = 279/414 (67%), Gaps = 10/414 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLQDYVARGGYQQLRRILEQKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     E  + A+DE  A+G LG N    G+  ++  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWEVYERFEQALDEARAAGYLGHNILGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G +G PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+SG
Sbjct: 193 GQPRFKPPFPASYGAFGKPTTINNTETFAAVPFLLAIGPQQYLELGKPNNGGTKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            VN P   E  +   F +L+E   GG+RG    + AVIPGGSS P +P  QM    +DYD
Sbjct: 253 DVNLPGNYEVPLGTPFAKLMEL-AGGVRG---QIKAVIPGGSSAPVVPGEQMMQTDLDYD 308

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVM+ +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 309 SIAKAGSMLGSGAVIVMNDTRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 368

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K+F    E  ++  H
Sbjct: 369 HGQGRQEDLDLLNSVAQNIMGRTICALGDAAAMPVRGMLKHFWNEFEYHVEHKH 422


>gi|297538951|ref|YP_003674720.1| NADH-quinone oxidoreductase subunit F [Methylotenera sp. 301]
 gi|297258298|gb|ADI30143.1| NADH-quinone oxidoreductase, F subunit [Methylotenera sp. 301]
          Length = 447

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/405 (52%), Positives = 272/405 (67%), Gaps = 10/405 (2%)

Query: 19  SLSDSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           SL   +  G +  + +I+    K  D II EVK SGLRGRGGAGF TG+KWSFMP+   D
Sbjct: 40  SLETYIKLGGYSALKRIVTEKTKATD-IITEVKTSGLRGRGGAGFPTGLKWSFMPRYF-D 97

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YLV N+DE EPGT KDRDI+R+ PH LIEG  IA++ +GA   + Y+ GE  ++ E 
Sbjct: 98  GVKYLVCNSDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGARVGYNYIHGEIWQDYEI 157

Query: 136 LQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            +AA+ E  A+G LG N  LG  ++ D+   HG GAYICGEETAL+ES+EGKKGQPR KP
Sbjct: 158 FEAALHEAKAAGYLGENI-LGSNFNFDLYAVHGYGAYICGEETALIESIEGKKGQPRFKP 216

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNN ES   +P IL  G   ++  G  N+ GTKLFS+SGHV  P  
Sbjct: 217 PFPASYGVFGKPTNVNNTESYTSIPWILEHGGQAFADLGVPNSGGTKLFSVSGHVEKPGN 276

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  M + F+EL+E   GG+  G   L AVIPGG S P +PA  +  A MDY+GL +  S
Sbjct: 277 YEVKMGMPFNELLEL-AGGVWKG-RKLKAVIPGGPSTPVMPAEAIMAATMDYEGLSKARS 334

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LG  ++IVMD +T ++KA+ RLS F+  ESCGQCTPCREGTGW+ RV++R+V G  +  
Sbjct: 335 SLGAGSMIVMDETTCMVKALHRLSYFFYEESCGQCTPCREGTGWVYRVIDRIVNGKGKME 394

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++DLL +VS NI GRTICALG+AAA P+   IK+FRP  E  I  
Sbjct: 395 DLDLLTDVSNNIAGRTICALGEAAATPVLSFIKHFRPEFEYYIQH 439


>gi|332526752|ref|ZP_08402854.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
 gi|332111155|gb|EGJ11187.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
          Length = 448

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/413 (52%), Positives = 274/413 (66%), Gaps = 14/413 (3%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGA 58
           Q +I+  L G   + L+D ++RG +  + KIL          D +I EVK S LRGRGGA
Sbjct: 24  QPQIYAGLDGRNWR-LADYVARGGYSALKKILGADGGPGMTPDQVIAEVKLSALRGRGGA 82

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFMP+     P YLV N+DE EPGTCKDRDI+ + PH +IEG  IA++A+G 
Sbjct: 83  GFPTGLKWSFMPRQFPG-PKYLVCNSDEGEPGTCKDRDILSYNPHIVIEGMCIAAYAMGI 141

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176
              + Y+ GE     +  + A+DE  A+G LG N  LG      +H  HG GAYICGEET
Sbjct: 142 RTGYNYIHGEIFEVYQRFEEALDEARAAGFLGDNI-LGSQHSFQLHAFHGFGAYICGEET 200

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   Y   G+ NN
Sbjct: 201 ALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINHGGQAYLEVGKPNN 260

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+FS+ G V  P   E  M   F  L+E   GG++GG   L AVIPGGSS P LPA 
Sbjct: 261 GGTKIFSVVGDVERPGNFEIPMGTPFATLLEM-AGGVKGG--ALKAVIPGGSSAPVLPAR 317

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            M    MDYD + + GS LG+ AVIVM+    +++++ RLS FY+HESCGQCTPCREGTG
Sbjct: 318 VMMDLTMDYDAIAKAGSMLGSGAVIVMNDKRCMVRSLMRLSYFYQHESCGQCTPCREGTG 377

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           W+ R++ER+  G  +  ++ LL  V+ NI+GRTICALGDAAA P+QG++K+FR
Sbjct: 378 WLWRLVERIETGKGRAEDLALLDSVADNIKGRTICALGDAAAMPVQGMLKHFR 430


>gi|325267322|ref|ZP_08133984.1| NADH-quinone oxidoreductase subunit F [Kingella denitrificans ATCC
           33394]
 gi|324981259|gb|EGC16909.1| NADH-quinone oxidoreductase subunit F [Kingella denitrificans ATCC
           33394]
          Length = 433

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/403 (51%), Positives = 269/403 (66%), Gaps = 6/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L+   +RG +  + KIL +   ++ +I+EVKASGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLAAYQARGGYQALRKILSEKTPQNDVIDEVKASGLRGRGGAGFPTGLKWSFMPRSLPGA 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+ + PH LIEG +IA +A+ A   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMYNPHALIEGMIIAGYAMCAEAGYNYIHGEIFEGFQRF 140

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           +AA+ E   +GLLG N    G+D ++  HHG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 141 EAALKEAREAGLLGKNIMGSGFDFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 200

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN E+++ +P I+R G   ++  G E   GTKLFSISGHV  P   E
Sbjct: 201 PASFGLYGKPTTINNTETLSSIPFIIRDGGKTFADQGIEGAGGTKLFSISGHVERPGNYE 260

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F +L+E   GG+RGG   L AVIPGGSS P LP   M G  MDYD + + GS L
Sbjct: 261 VPLGTPFAKLLEM-AGGMRGG-KKLKAVIPGGSSAPVLPGDIMMGLNMDYDSIAKAGSML 318

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ RV+ R+  G  +  ++
Sbjct: 319 GSGAIIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRVVHRIASGKGRPDDL 378

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +LL  V  N+ GRTICAL DAA +P++   K+FR   E  I+ 
Sbjct: 379 ELLDSVGNNMAGRTICALADAAVFPVRSFTKHFRAEFEHYIEH 421


>gi|264677203|ref|YP_003277109.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni
           CNB-2]
 gi|299530747|ref|ZP_07044162.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni S44]
 gi|262207715|gb|ACY31813.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni
           CNB-2]
 gi|298721263|gb|EFI62205.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni S44]
          Length = 454

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/420 (53%), Positives = 280/420 (66%), Gaps = 13/420 (3%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60
           +I+ +L G    S+ D  +RG +  + K+L K       +D +I  +K SGLRGRGGAGF
Sbjct: 34  QIYADLNG-SNWSIKDYEARGGYQALRKLLGKDGGEGLTQDQVIATLKESGLRGRGGAGF 92

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+    + H LV N+DE EPGTCKDRDI+   PH +IEG +IA+FA+G   
Sbjct: 93  PTGLKWSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILMFNPHIVIEGMIIAAFAMGISI 151

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            + Y+ GE     E  +AA++E  A+G LG N  LG  +   +  HHG GAYICGEETAL
Sbjct: 152 GYNYIHGEIFEVYERFEAALEEARAAGYLGDNI-LGSSFSFQLHAHHGFGAYICGEETAL 210

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN G
Sbjct: 211 LESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGG 270

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+FS+SG VN P   E  M   F +L+E   GG+R G   L AVIPGGSS P LPA  +
Sbjct: 271 TKIFSVSGDVNLPGNYEVPMGTPFSKLLEL-AGGVRTG-RKLKAVIPGGSSSPVLPADII 328

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDYD + + GS LG+ AVIVMD S D+++ + RLS FY HESCGQCTPCREGTGW+
Sbjct: 329 MDCTMDYDSISKAGSMLGSGAVIVMDDSRDMVECLLRLSYFYSHESCGQCTPCREGTGWL 388

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RV+ R+  G  +  +I+LL  VS NI GRTICALGDAAA P++ +IK+FR   E +I  
Sbjct: 389 WRVVNRIQHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQN 448


>gi|296136701|ref|YP_003643943.1| hypothetical protein Tint_2263 [Thiomonas intermedia K12]
 gi|295796823|gb|ADG31613.1| hypothetical protein Tint_2263 [Thiomonas intermedia K12]
          Length = 442

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/411 (52%), Positives = 274/411 (66%), Gaps = 10/411 (2%)

Query: 12  LYGLQGK--SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G   +L   + R  +  + KIL +G   + +I EVKAS LRGRGGAGF TG+KWS
Sbjct: 25  LAGLNGDNWALEGYLQRDGYQALRKILTEGWTPEQVIAEVKASALRGRGGAGFPTGLKWS 84

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH +IEG  IA+FA+G    + Y+ G
Sbjct: 85  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHAVIEGMTIAAFAMGITVGYNYIHG 143

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGK 185
           E   + +  + A+ +   +G LG N  LG +    +H  HG GAYICGEETALLESLEGK
Sbjct: 144 EIFEDYDRFEEALRQARDAGYLGDNI-LGSNFSFQLHAAHGFGAYICGEETALLESLEGK 202

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK++S+S
Sbjct: 203 KGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRHGGQAYLEVGKPNNGGTKIYSVS 262

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  M   F +L+E   GG+R G + L AVIPGGSS P LPA  M    MDY
Sbjct: 263 GDVAKPGNYEVPMGTPFAKLLEL-AGGMREGRE-LKAVIPGGSSAPVLPASIMMDCTMDY 320

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIV++ +  ++K++ RLS FY+HESCGQCTPCREGTGW+ RV+ R+
Sbjct: 321 DSIAKAGSMLGSGAVIVLNDTRCMVKSLMRLSYFYQHESCGQCTPCREGTGWLWRVVHRI 380

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             G  +  ++DLL  VS NI GRTICALGDAAA P++  +K+FRP  E  I
Sbjct: 381 ENGQGRMEDLDLLNSVSDNIAGRTICALGDAAAMPVKSFVKHFRPEFEHHI 431


>gi|300703647|ref|YP_003745249.1| NADH-quinone oxidoreductase subunit f [Ralstonia solanacearum
           CFBP2957]
 gi|299071310|emb|CBJ42628.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           CFBP2957]
          Length = 431

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/402 (52%), Positives = 274/402 (68%), Gaps = 8/402 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E   E +  + A++E  A+G LG N    G++  +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWNEYKIFEQALEEARAAGFLGDNILGTGFNFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+FS+SG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+R G   L AVIPGGSS P +PA  M  + MDYD
Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRDG-KKLKAVIPGGSSAPVVPADLMMASDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV++R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++
Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412


>gi|253996968|ref|YP_003049032.1| NADH-quinone oxidoreductase subunit F [Methylotenera mobilis JLW8]
 gi|253983647|gb|ACT48505.1| NADH-quinone oxidoreductase, F subunit [Methylotenera mobilis JLW8]
          Length = 438

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/377 (54%), Positives = 260/377 (68%), Gaps = 4/377 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+EVKASGLRGRGGAGF TG+KWSFMP+   D   YLV N DE EPGT KDRDI+R+ P
Sbjct: 57  IISEVKASGLRGRGGAGFPTGLKWSFMPRYF-DGVKYLVCNTDEGEPGTFKDRDIIRYNP 115

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG  IA++ +GA   + Y+ GE  ++ E  +AA+ E  A+G LG +     +  D+
Sbjct: 116 HQLIEGMAIAAYTLGARVGYNYIHGEIWQDYEIFEAALHEAKAAGYLGEDLFGTNFSFDL 175

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
              HG GAYICGEETAL+ES+EGKKGQPR KPPFPA+ G++G PT VNN ES   +P I+
Sbjct: 176 YAVHGYGAYICGEETALIESIEGKKGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWIM 235

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           + G   ++  G  N+ GTKLFSISGHV  P   E +M + F EL+    GGI  G   L 
Sbjct: 236 QNGGKAFADLGVANSGGTKLFSISGHVEKPGNYEVNMGMPFTELL-ALAGGIWKG-RQLK 293

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVIPGG S   +PA  + GA MDYDGL +  S LG  ++IVMD +T ++KA+ RLS F+ 
Sbjct: 294 AVIPGGPSTAVMPASAILGATMDYDGLSKARSSLGAGSMIVMDDTTCMVKALHRLSYFFY 353

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCGQCTPCREGTGW+ RV++R+VKG  +  ++DLL +VS NI GRTICALG+AAA P+
Sbjct: 354 EESCGQCTPCREGTGWVYRVIDRIVKGQGKMEDLDLLTDVSNNIAGRTICALGEAAATPV 413

Query: 402 QGLIKNFRPLIEERIDQ 418
              IK+FRP  E  I  
Sbjct: 414 LSFIKHFRPEFEYYIQH 430


>gi|319779203|ref|YP_004130116.1| NADH-ubiquinone oxidoreductase chain F [Taylorella equigenitalis
           MCE9]
 gi|317109227|gb|ADU91973.1| NADH-ubiquinone oxidoreductase chain F [Taylorella equigenitalis
           MCE9]
          Length = 452

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/394 (54%), Positives = 269/394 (68%), Gaps = 8/394 (2%)

Query: 20  LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L D + RG ++ + KIL  G  ++ II E+KASGLRGRGGAGF TG+KWSFMP+    + 
Sbjct: 45  LEDYVKRGGYEAIKKILTTGLKQEDIIAELKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 103

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V N+DE EPGT KDRDI+R  PH +IEG +I  FA+G    + Y+ GE     E  Q
Sbjct: 104 KYIVCNSDEGEPGTFKDRDILRFNPHCIIEGMIIGGFAMGVTRGYNYIHGEIFEVYERFQ 163

Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A+ E  A+G LGSN  LG D   D+  HHG GAYICGEETALLES+EGKKGQPR KPPF
Sbjct: 164 EAIHEARAAGYLGSNI-LGTDFCFDLEAHHGYGAYICGEETALLESIEGKKGQPRFKPPF 222

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN E+ A VP I+R G   Y   G  NN GTKLFSISG V  P T E
Sbjct: 223 PASFGLYGKPTTINNAETFAAVPWIIRNGGPAYLEVGLPNNGGTKLFSISGDVEKPGTYE 282

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F +L+E   GG+R G   L AVIPGGSS P LPA  M    MDYD + + GS L
Sbjct: 283 IPLGTPFSKLLEL-AGGMREGRP-LKAVIPGGSSSPVLPAEIMMQTNMDYDSISKAGSML 340

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVM+ +  ++K++ RLS FY+ ESCGQCTPCREGTGW+ R++ R+  G  +  ++
Sbjct: 341 GSGAVIVMNDTRCMVKSLLRLSHFYQDESCGQCTPCREGTGWLYRLVHRIEHGHGKLEDL 400

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           D L  V+ NI GRTICALGDAAA P++G +K++R
Sbjct: 401 DQLDRVAGNIMGRTICALGDAAAMPVRGFLKHYR 434


>gi|253998388|ref|YP_003050451.1| NADH-quinone oxidoreductase subunit F [Methylovorus sp. SIP3-4]
 gi|313200464|ref|YP_004039122.1| NADH-quinone oxidoreductase subunit F [Methylovorus sp. MP688]
 gi|253985067|gb|ACT49924.1| NADH-quinone oxidoreductase, F subunit [Methylovorus sp. SIP3-4]
 gi|312439780|gb|ADQ83886.1| NADH-quinone oxidoreductase, F subunit [Methylovorus sp. MP688]
          Length = 439

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/404 (51%), Positives = 268/404 (66%), Gaps = 8/404 (1%)

Query: 19  SLSDSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           SL   ++ G +  + ++++   K  D +I +VK SGLRGRGGAGF TG+KWSFMP+   D
Sbjct: 30  SLQAYLNVGGYKQLQRLVQDKVKATD-VITQVKLSGLRGRGGAGFPTGLKWSFMPRYY-D 87

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YLV N DE EPGT KDRDI+R+ PH LIEG  IA++ +GA   + Y+ GE  ++ E 
Sbjct: 88  GTKYLVCNTDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGARVGYNYIHGEIWQDYEI 147

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            + A+DE  A+G +G N     +  D+   HG GAYICGEETAL+ES+EGKKGQPR KPP
Sbjct: 148 FERALDEARAAGFIGENLFGTTFSFDLFAVHGYGAYICGEETALIESIEGKKGQPRFKPP 207

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ G++G PT VNN ES   +P IL  G   +   G  N+ GTKLFS+SGHV  P   
Sbjct: 208 FPASYGVFGKPTNVNNTESYTSIPWILEHGGDAFQALGVPNSGGTKLFSVSGHVERPGNY 267

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M + F EL++   G  +G    L AVIPGG S   +PA  + GA MDYDGL + GS 
Sbjct: 268 EVRMGMPFTELLDIAGGVWKG--RQLKAVIPGGPSTAVMPAAAIMGATMDYDGLSKAGSS 325

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG  ++IVMD +T ++K + RLS F+  ESCGQCTPCREGTGW+ RV++R+V+G  +  +
Sbjct: 326 LGAGSMIVMDETTCMVKTLKRLSYFFYEESCGQCTPCREGTGWLYRVVKRIVEGEGRMGD 385

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +DLL +VS NI GRTICALGDAAA P+   IK+FRP  E  I  
Sbjct: 386 LDLLTDVSSNISGRTICALGDAAATPVLSFIKHFRPEFEYYIQH 429


>gi|221068607|ref|ZP_03544712.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni
           KF-1]
 gi|220713630|gb|EED68998.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni
           KF-1]
          Length = 454

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/420 (52%), Positives = 280/420 (66%), Gaps = 13/420 (3%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60
           +I+ +L G    S+ D  +RG +  + K+L K       +D +I  +K SGLRGRGGAGF
Sbjct: 34  QIYADLNG-SNWSIKDYEARGGYQALRKLLGKDGGEGLTQDQVIATLKESGLRGRGGAGF 92

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+    + H LV N+DE EPGTCKDRDI+   PH +IEG +IA+FA+G   
Sbjct: 93  PTGLKWSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILMFNPHIVIEGMIIAAFAMGISI 151

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            + Y+ GE     +  +AA++E  A+G LG N  LG  +   +  HHG GAYICGEETAL
Sbjct: 152 GYNYIHGEIFEVYDRFEAALEEARAAGYLGDNI-LGSSFSFQLHAHHGFGAYICGEETAL 210

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN G
Sbjct: 211 LESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGG 270

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+FS+SG VN P   E  M   F +L+E   GG+R G   L AVIPGGSS P LPA  +
Sbjct: 271 TKIFSVSGDVNLPGNYEVPMGTPFSKLLEL-AGGVRTG-RKLKAVIPGGSSSPVLPADII 328

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDYD + + GS LG+ AVIVMD S D+++ + RLS FY HESCGQCTPCREGTGW+
Sbjct: 329 MDCTMDYDSISKAGSMLGSGAVIVMDDSRDMVECLLRLSYFYSHESCGQCTPCREGTGWL 388

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RV+ R+  G  +  +I+LL  VS NI GRTICALGDAAA P++ +IK+FR   E +I  
Sbjct: 389 WRVVNRIQHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQN 448


>gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F [Herbaspirillum seropedicae SmR1]
 gi|300073885|gb|ADJ63284.1| NADH dehydrogenase I (chain F) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/404 (51%), Positives = 270/404 (66%), Gaps = 6/404 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L D + RG ++++ +IL +    + +I ++KASGLRGRGGAGF TG+KWSFMP+    + 
Sbjct: 24  LEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLKWSFMPRQFPGQ- 82

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV N DE EPGT KDRDI+R+ PH LIEG +I  +A+G    + Y+ GE     E  +
Sbjct: 83  KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYAMGITVGYNYIHGEIFSAYERFE 142

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E  A+G LG N    G+   +  HHG GAYICGEETALLESLEGKKGQPR KPPFP
Sbjct: 143 EALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGEETALLESLEGKKGQPRFKPPFP 202

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GLYG PTT+NN E+ A VP I + G   Y+  G+ NN GTK+FSISG V  P   E 
Sbjct: 203 ASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKPNNGGTKIFSISGDVERPGNYEI 262

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            +   F  L+E   GG+RGG   + AVIPGGSS P +    M    MDYD + + GS LG
Sbjct: 263 PLGTPFSTLLEL-AGGMRGG-KKIKAVIPGGSSAPVIRGDVMMDTTMDYDAIAKAGSMLG 320

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           + AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGWM R++ER+  G  +  ++D
Sbjct: 321 SGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWMYRMVERIENGHGKMEDLD 380

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +L  V+ NI+GRTICALGDAAA P++  +KNFR   E  I+  H
Sbjct: 381 VLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHIEHKH 424


>gi|114777366|ref|ZP_01452363.1| NADH-quinone oxidoreductase, F subunit [Mariprofundus ferrooxydans
           PV-1]
 gi|114552148|gb|EAU54650.1| NADH-quinone oxidoreductase, F subunit [Mariprofundus ferrooxydans
           PV-1]
          Length = 425

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/374 (54%), Positives = 259/374 (69%), Gaps = 4/374 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++E+K SGLRGRGGAGF TG+KWSF+P+  + +P YL+ NADE EPGT KDRDIMR +P
Sbjct: 49  IVDEMKLSGLRGRGGAGFPTGLKWSFVPR-NTGKPTYLLCNADEGEPGTFKDRDIMRFDP 107

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG ++A FA+    A+IYVRGEF+ E   +  A+ E YA+ LLG N    GY + +
Sbjct: 108 HLLIEGMIMAGFALNVRDAYIYVRGEFLHEANVMNEAIREAYAANLLGENILGSGYSMHL 167

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAGAYICGEETAL+ESLEGK G+PR KPPFPA  G Y CPT VNNVE++A VP IL
Sbjct: 168 TVHRGAGAYICGEETALIESLEGKPGRPRFKPPFPAVEGFYRCPTVVNNVETLATVPAIL 227

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             G +W++  G  NN G K+FS+SGHVN P   E  M  +   LIE++CGG++ G    +
Sbjct: 228 EHGGAWHAAIGVPNNTGCKIFSVSGHVNKPGNYEVPMGTSLKTLIEEYCGGLQHGSVPKV 287

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
            VIPGGSS P L A     A + YDG+ + GS LG+ A+IVMD + D+I    RL+ FY 
Sbjct: 288 -VIPGGSSTPWLTAEHYE-APLTYDGMIKAGSMLGSGAIIVMDETADLIAVTRRLAHFYA 345

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
           HESCGQCTPCREGTGW+ R+M R+  G A   +I +L + + ++ GRTICAL D AA PI
Sbjct: 346 HESCGQCTPCREGTGWLERIMIRVENGQACAEDIQVLSDAATHMAGRTICALADGAAAPI 405

Query: 402 QGLIKNFRPLIEER 415
             ++K+F   +  R
Sbjct: 406 LSMLKHFPDEVRAR 419


>gi|124266601|ref|YP_001020605.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
 gi|124259376|gb|ABM94370.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
          Length = 448

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/416 (52%), Positives = 281/416 (67%), Gaps = 15/416 (3%)

Query: 14  GLQGKS--LSDSMSRGHWDNVDKILEKGR-------DWIINEVKASGLRGRGGAGFSTGM 64
           GL G++  L D  +RG +  + +IL+ G        D +I EVKASGLRGRGGAGF TG+
Sbjct: 28  GLDGRNWRLKDYEARGGYQALRRILQGGEGVEPMTPDQVIAEVKASGLRGRGGAGFPTGL 87

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KWSFMP+    +  YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G    + Y
Sbjct: 88  KWSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILAYNPHIVIEGMIIAAYAMGISVGYNY 146

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESL 182
           + GE     E  + A++E  A+G LG N+ LG      +H  HG GAYICGEETALLESL
Sbjct: 147 IHGEIFEIYERFEEALEEARAAGYLG-NAILGSAHSFQLHAFHGFGAYICGEETALLESL 205

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+F
Sbjct: 206 EGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIF 265

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+ G V  P   E  +   F  L+E   GG++GG   L AVIPGGSS P LPA  M    
Sbjct: 266 SMVGDVERPGNYEIPLGTPFSTLLEL-AGGVKGG-RGLKAVIPGGSSAPVLPASIMMNTT 323

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY+HESCGQCTPCREGTGW+ R++
Sbjct: 324 MDYDSIAKAGSMLGSGAVIVMDDTRCMVKSLLRLSYFYQHESCGQCTPCREGTGWLWRMV 383

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +R+ +G  +  +IDLL  V+ NI+GRTICALGDAAA P++ +IK+FR      I+ 
Sbjct: 384 DRIERGHGRMEDIDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFREEFVHHIEH 439


>gi|94309877|ref|YP_583087.1| NADH-quinone oxidoreductase, F subunit [Cupriavidus metallidurans
           CH34]
 gi|93353729|gb|ABF07818.1| NADH:ubiquinone oxidoreductase, chain F [Cupriavidus metallidurans
           CH34]
          Length = 431

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/412 (50%), Positives = 277/412 (67%), Gaps = 8/412 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL GK+  L D + RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLDGKNWHLEDYVKRGGYKQLRRILEEKVTPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N DE EPGT KDRDI+R+ PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRAFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E   E +  + A++E   +G LG N    G++  +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWNEYKIFEEALEEARRAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+FS+SG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLEVGPENYLKMGKPNNGGSKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M  + MDYD
Sbjct: 253 DVERPGNYEIPLGTPFATLLEL-AGGMRGG-KKIKAVIPGGSSAPVVPGDLMMASDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ R++ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRMVNRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  ++ 
Sbjct: 371 HGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHVEH 422


>gi|332285012|ref|YP_004416923.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Pusillimonas
           sp. T7-7]
 gi|330428965|gb|AEC20299.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Pusillimonas
           sp. T7-7]
          Length = 455

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/411 (52%), Positives = 270/411 (65%), Gaps = 10/411 (2%)

Query: 14  GLQGKS--LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           GL G +  L D + RG ++ + KIL  G   D +I EVKAS LRGRGGAGF TG+KWSFM
Sbjct: 40  GLDGANWGLEDYVKRGGYEALRKILTTGMTPDDVIAEVKASSLRGRGGAGFPTGLKWSFM 99

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
           P+    +  YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    + Y+ GE 
Sbjct: 100 PRTLPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGITVGYNYIHGEI 158

Query: 130 IRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKG 187
               E  + A+++  A+G LG +  LG +    +H  HG GAYICGEETALLESLEGKKG
Sbjct: 159 FEIYERFEEALEQARAAGFLG-DKILGSEFSFQLHAFHGYGAYICGEETALLESLEGKKG 217

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           QPR KPPFPA+ GLYG PTT+NN E+ A VP I R  A  Y   G  N  GTKLFSISG 
Sbjct: 218 QPRFKPPFPASFGLYGKPTTINNTETFAAVPWIFRHSAQEYLDIGVANAGGTKLFSISGD 277

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V  P   E  +   F +L+E   GG+RGG   L AVIPGGSS P LPA  M    MDYD 
Sbjct: 278 VELPGNYEIPLGTPFSKLLEL-AGGMRGG-RKLKAVIPGGSSAPVLPAEIMMQTNMDYDS 335

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  
Sbjct: 336 IAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMLARIEN 395

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           G  +  ++D+L  V+ NI GRTICALGDAAA P++  IK+FR      I+ 
Sbjct: 396 GQGRPEDLDVLDSVAHNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEH 446


>gi|82702225|ref|YP_411791.1| NADH-quinone oxidoreductase, F subunit [Nitrosospira multiformis
           ATCC 25196]
 gi|82410290|gb|ABB74399.1| NADH dehydrogenase subunit F [Nitrosospira multiformis ATCC 25196]
          Length = 425

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/369 (56%), Positives = 257/369 (69%), Gaps = 6/369 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II EVK S LRGRGGAGF TG+KWSFMPK   +   YLV N+DE EPGT KDRDIMR+ P
Sbjct: 47  IIEEVKKSALRGRGGAGFPTGLKWSFMPKQ-YEGDKYLVCNSDEGEPGTFKDRDIMRYNP 105

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H LIEG +I ++A+G    + YV GE     E ++ AVDE  A+G LG N  LG D    
Sbjct: 106 HMLIEGMLIGAYAMGIRAGYNYVHGEIWDVYERMEEAVDEARAAGYLGDNI-LGSDFSFQ 164

Query: 163 V--HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           +  HHG GAYICGEETALLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I
Sbjct: 165 LYNHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFASVPWI 224

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           +R G   +   G+ NN GTK+FS+SGHVN P   E  +   F  L+E   GG+RGG   L
Sbjct: 225 IRHGGDKFLQLGKPNNGGTKIFSVSGHVNKPGNYEVPLGTPFAALLEM-AGGMRGG-RKL 282

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
              IPGGSS+P LP   M    MDYD + + GS LG+ AVI+MD +T +++A+ RLS FY
Sbjct: 283 KGCIPGGSSMPVLPGDVMMQTDMDYDSIAKAGSFLGSGAVIIMDDTTCMVRALERLSYFY 342

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCGQCTPCREGTGW+ R++ R+  G  +  ++DLL  ++ NI+GRTICALGDAAA P
Sbjct: 343 YEESCGQCTPCREGTGWLYRIVHRIETGKGRMEDLDLLNNLADNIQGRTICALGDAAAMP 402

Query: 401 IQGLIKNFR 409
           ++ +I++FR
Sbjct: 403 VRAMIQHFR 411


>gi|91776408|ref|YP_546164.1| NADH-quinone oxidoreductase, F subunit [Methylobacillus flagellatus
           KT]
 gi|91710395|gb|ABE50323.1| NADH dehydrogenase subunit F [Methylobacillus flagellatus KT]
          Length = 441

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/375 (54%), Positives = 255/375 (68%), Gaps = 4/375 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II++VK SGLRGRGGAGF TG+KWSFMP+   D   YLV N DE EPGT KDRDI+R+ P
Sbjct: 46  IISQVKLSGLRGRGGAGFPTGLKWSFMPRYF-DGTKYLVCNTDEGEPGTFKDRDIIRYNP 104

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS-NSKLGYDVDI 161
           H LIEG  IA++ +GA   + Y+ GE  RE E  +AA+DE  A+G LG       +  D+
Sbjct: 105 HQLIEGMAIAAYTLGARVGYNYIHGEIWREYEIFEAALDEARAAGYLGECLFDTDFSFDL 164

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
              HG GAYICGEETAL+ES+EGKKGQPR KPPFPA+ G++G PT VNN ES   +P I+
Sbjct: 165 YAVHGYGAYICGEETALIESIEGKKGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWIM 224

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             G   +   G  N+ GTK+FS+SGHV  P   E +M   F EL+    GG+  G   L 
Sbjct: 225 EHGGQAFQELGVANSGGTKIFSVSGHVEKPGNYEVNMGTPFTELL-ALAGGVWKG-RQLK 282

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVIPGG S   LPA  + GA MDYDGL + GS LG  ++IVMD +T ++K + RLS F+ 
Sbjct: 283 AVIPGGPSTAILPASAIMGATMDYDGLSKAGSSLGAGSMIVMDETTCMVKTLKRLSYFFY 342

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCGQCTPCREGTGW+ RV++R+V G  +  ++DLL +VS NI GRTICALGDAAA P+
Sbjct: 343 EESCGQCTPCREGTGWLYRVIKRIVDGQGRMEDLDLLTDVSSNISGRTICALGDAAATPV 402

Query: 402 QGLIKNFRPLIEERI 416
              IK+FRP  E  I
Sbjct: 403 LSFIKHFRPEFEYYI 417


>gi|226939461|ref|YP_002794534.1| NuoF [Laribacter hongkongensis HLHK9]
 gi|226714387|gb|ACO73525.1| NuoF [Laribacter hongkongensis HLHK9]
          Length = 431

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/403 (52%), Positives = 265/403 (65%), Gaps = 8/403 (1%)

Query: 20  LSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L   + RG +  + KI+  +  ++ +I EVK S LRGRGGAGF TG+KWSFMP+      
Sbjct: 23  LDAYVKRGGYQALKKIIGNKIPQEDVIAEVKGSNLRGRGGAGFPTGLKWSFMPRSFPGD- 81

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV N DE EPGT KDRDI R  PH LIEG +IA++A+G    + Y+ GE   E +  +
Sbjct: 82  KYLVCNTDEGEPGTFKDRDIHRFNPHALIEGMIIAAYAMGVKRGYNYIHGEIFEEYQRFE 141

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A+DE   +GLLG NS L   +  D+  HHG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 142 EALDEARRAGLLG-NSILDSEFSFDLFAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 200

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN ES A VP I+R G   +   G+ NN GTKLFS+SGHVN P   E
Sbjct: 201 PASFGLYGKPTTINNTESFASVPFIIRDGGQSFLEKGKPNNGGTKLFSVSGHVNRPGNFE 260

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F EL+E   GG++ G   L AVIPGGSS P LPA  M    MDYD + + GS L
Sbjct: 261 VPLGTPFAELLEM-AGGMKDG-KKLKAVIPGGSSAPVLPADIMMDCTMDYDSIAKAGSML 318

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVM+    ++KA+ RL+ FY  ESCGQCTPCREGTGW+ R++ R+  G  +  ++
Sbjct: 319 GSGAVIVMNEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYRIIHRIEHGEGRPEDL 378

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           DLL  V  N+ GRTICAL DAA +P++   K+FR   E  I+ 
Sbjct: 379 DLLASVGNNMAGRTICALADAAVFPVRSFTKHFRNEFEYHIEH 421


>gi|186476759|ref|YP_001858229.1| NADH-quinone oxidoreductase subunit F [Burkholderia phymatum
           STM815]
 gi|184193218|gb|ACC71183.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phymatum
           STM815]
          Length = 442

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/417 (51%), Positives = 275/417 (65%), Gaps = 13/417 (3%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D + RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLQDYVERGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E        +AA++E   +G LG N    G+   +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIFEVYRRFEAALEEARTAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+SG
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDYD
Sbjct: 253 DVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            G+ +K ++DLL  V++NI GRTICALGDAAA P++G++K++    E     YH  N
Sbjct: 371 HGLGRKEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFE-----YHVAN 422


>gi|224824818|ref|ZP_03697925.1| NADH-quinone oxidoreductase, F subunit [Lutiella nitroferrum 2002]
 gi|224603311|gb|EEG09487.1| NADH-quinone oxidoreductase, F subunit [Lutiella nitroferrum 2002]
          Length = 431

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/403 (52%), Positives = 266/403 (66%), Gaps = 8/403 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L   ++RG +  + KIL+    ++ +I EVK SGLRGRGGAGF TG+KWSFMP+      
Sbjct: 23  LDAYVARGGYQALRKILDSKLPQEDVIAEVKNSGLRGRGGAGFPTGLKWSFMPRSFPGD- 81

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V N DE EPGT KDRDI+R  PH LIEG +IA +A+G    + Y+ GE   E +  +
Sbjct: 82  KYVVCNTDEGEPGTFKDRDILRFNPHALIEGMIIAGYAMGTKAGYNYIHGEVFAEYQRFE 141

Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++E   +G LG +  LG D   ++  HHG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 142 EALEEARKAGFLGQHI-LGTDFSFELYAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 200

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN ES A VP I+R GA  +   G+ NN GTKLFS+SGHVN P   E
Sbjct: 201 PASFGLYGKPTTINNTESFASVPFIIRDGAQKFLEAGKPNNGGTKLFSVSGHVNRPGNYE 260

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F  L+E   GG+R G   L AVIPGGSS P LPA  M    MDYD + + GS L
Sbjct: 261 IPLGTPFSTLLEM-AGGMRDG-KKLKAVIPGGSSAPILPAEIMMSCTMDYDSISKAGSML 318

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVM+    +IKA+ RL+ FY  ESCGQCTPCREGTGW+ RV+ R+  G  +  ++
Sbjct: 319 GSGAVIVMNEDVCMIKALERLAYFYHEESCGQCTPCREGTGWLYRVIHRIANGEGRPGDL 378

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +LL  V  N+ GRTICAL DAA +P++   K+FR   E  I+ 
Sbjct: 379 ELLDSVGNNMAGRTICALADAAVFPVRSFTKHFRHEFEYAIEH 421


>gi|237748886|ref|ZP_04579366.1| NADH dehydrogenase chain F [Oxalobacter formigenes OXCC13]
 gi|229380248|gb|EEO30339.1| NADH dehydrogenase chain F [Oxalobacter formigenes OXCC13]
          Length = 433

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/416 (51%), Positives = 283/416 (68%), Gaps = 13/416 (3%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           GL G   +L+D +SRG ++   +IL +   R+ II+EV+ASGLRGRGGAGF T +KW FM
Sbjct: 16  GLTGDNWTLADYVSRGGYEQFKRILAERMPRERIIDEVRASGLRGRGGAGFPTAVKWGFM 75

Query: 70  PKVCSDRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           PK   D P   YL+ NADESEPGT KDRDI+R+ PH +IEG +IA++A+G    +IY+ G
Sbjct: 76  PK---DHPGQMYLICNADESEPGTFKDRDILRYNPHAVIEGMLIAAYAMGITAGYIYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     E    A+ +   +GL+G + +  G+D ++   HG GAYICGEETALLES+EGK+
Sbjct: 133 EIWAVYEQFGEAIRQAREAGLIGRDLQGSGFDFELHAFHGYGAYICGEETALLESMEGKR 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA  GLYG PTT+NNVE++A VP I+  G   Y+  GR N  GTK+F +SG
Sbjct: 193 GQPRFKPPFPATNGLYGQPTTINNVETLAYVPFIMAMGGDAYAALGRNNCPGTKIFCLSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  + I+F EL+E   GG++ G   + AVIPGGSS P LPA  M    MDYD
Sbjct: 253 DVARPGNYEVPLGISFPELLEL-AGGMKDGL-AMKAVIPGGSSSPVLPAETMMQLNMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LGT  VIV++ +  ++KA+  LS FY +ESCGQCTPCREGTGW++ ++ER+ 
Sbjct: 311 SIAKAGSMLGTGGVIVLNETRCMVKALLNLSRFYWNESCGQCTPCREGTGWLVSLIERIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            G  +  ++DLL  V+ NI GRTICALGDAAA P++  IK+FR   E  I ++ RC
Sbjct: 371 NGQGKTEDLDLLDNVAANIMGRTICALGDAAAMPVRSFIKHFRAEFEYHI-EHKRC 425


>gi|123500998|ref|XP_001327980.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family protein
           [Trichomonas vaginalis G3]
 gi|121910917|gb|EAY15757.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family protein
           [Trichomonas vaginalis G3]
          Length = 425

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/415 (45%), Positives = 274/415 (66%), Gaps = 2/415 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +DRIFTN+ G+    L   M RG W++  KI+  G+ +I++EV+ S LRGR GAG 
Sbjct: 10  MLNKRDRIFTNINGVDESDLQSCMKRGDWNDTQKIIANGKKYILDEVRKSELRGRSGAGL 69

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T  KW  +       PHYL +N +ESEPGTCKDR I+++EP  +IEG  +AS+A+  H 
Sbjct: 70  LTYKKWEEI-LTSKQLPHYLCINGNESEPGTCKDRQILQNEPQKIIEGAFLASYALDVHR 128

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            ++YVRG + +E + LQ A+DE   + L+G N+K G+D +I VH GAGAY+CGE+T L+ 
Sbjct: 129 CYVYVRGHYTKEAKRLQLAIDEAKKANLIGKNNKFGWDFEINVHPGAGAYVCGEQTGLMT 188

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG  G PR KPP P   GL+ CPT V+NVE+I+ + +I RRG  W+S  G   +RG K
Sbjct: 189 SLEGNPGTPRQKPPQPFEKGLFQCPTVVDNVETISTISSICRRGGKWFSSLGIPGSRGPK 248

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           ++ ISGHVN PC VEE++ ++  ELI+ H  G+RGGWDNL  +IPGG+S P +   Q + 
Sbjct: 249 IYQISGHVNRPCIVEETLGMSLKELIDVHGSGVRGGWDNLQCIIPGGTSCPPITKEQAKN 308

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AI+ +D + ++GSGLGT +++V+D + DI++   R++ FYK E CGQC  C EGT  M  
Sbjct: 309 AILGFDEMSKIGSGLGTGSLVVIDNTADIVEVYRRIANFYKDECCGQCKQCVEGTETMAE 368

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           + +++ +G   K ++  L EV+  ++ + IC+    A+ PI+G +K F+  + ER
Sbjct: 369 IFDKIARGKGTKDDVKHLEEVAFGMK-KYICSFSVGASDPIRGFLKVFKNKLLER 422


>gi|330826547|ref|YP_004389850.1| NADH-quinone oxidoreductase subunit F [Alicycliphilus denitrificans
           K601]
 gi|329311919|gb|AEB86334.1| NADH-quinone oxidoreductase, F subunit [Alicycliphilus
           denitrificans K601]
          Length = 449

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/405 (53%), Positives = 275/405 (67%), Gaps = 12/405 (2%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65
           GL G   S+ D  +RG +  + KIL K       +D +I  VK SGLRGRGGAGF TG+K
Sbjct: 32  GLNGSNWSIKDYEARGGYAALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFPTGLK 91

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    + H LV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G    + Y+
Sbjct: 92  WSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISLGYNYI 150

Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE  +  E  +AA++E  A+G LGSN     +   +  HHG GAYICGEETALLESLEG
Sbjct: 151 HGEIFQVYERFEAALEEARAAGYLGSNIMDSDFSFQLHAHHGFGAYICGEETALLESLEG 210

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS+
Sbjct: 211 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIFSV 270

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  M    MD
Sbjct: 271 SGDVERPGNYEIPLGTPFAKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIMMECTMD 328

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD S D+++++ RLS FY HESCGQCTPCREGTGW+ RV+ R
Sbjct: 329 YDSIAKAGSMLGSGAVIVMDDSRDMVESLMRLSYFYMHESCGQCTPCREGTGWLWRVVHR 388

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +  G  +  +I++L  V+ NI GRTICALGDAAA P++ +IK+FR
Sbjct: 389 IQHGQGRVEDIEVLDSVAFNIMGRTICALGDAAAMPVRAMIKHFR 433


>gi|312200062|ref|YP_004020123.1| NADH-quinone oxidoreductase F subunit [Frankia sp. EuI1c]
 gi|311231398|gb|ADP84253.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EuI1c]
          Length = 436

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/391 (51%), Positives = 263/391 (67%), Gaps = 5/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L      G + +V      G D +I  VK SGLRGRGGAGF TGMKWSF+P+    +PH
Sbjct: 18  TLETYAEHGGYSSVQAAFNLGPDAVIKMVKDSGLRGRGGAGFPTGMKWSFIPQ-GDGKPH 76

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADE EPGTCKD  +M  +PH+LIEG ++ASFA+ A+ A++YVRGE I     L+ 
Sbjct: 77  YLVVNADEGEPGTCKDAPLMMTDPHSLIEGIIVASFAVRANRAYVYVRGELIHAARRLRN 136

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV E Y +G LG+N    G+D+D+++H GAGAYICGEETALL+SLEG++GQPRL+PPFPA
Sbjct: 137 AVAEAYRAGYLGTNILGSGFDLDLVIHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPA 196

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLY  PT +NNVE+IA VP I+  G  W+   G E + G K++S+SGHV  P   E  
Sbjct: 197 THGLYNSPTVINNVETIASVPFIVNNGVEWFRSMGTEKSPGPKIYSLSGHVTRPGQYEAP 256

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M  T  EL+E   GG+RGG   L A  PGGSS P L A  +    +D+DG+   GS LGT
Sbjct: 257 MGTTLRELLEL-AGGVRGG-RALKAWTPGGSSTPMLTAEHLD-VPLDFDGVAAAGSLLGT 313

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AA+++MD + D++  + RL+ FY HESCG+CTPCREGT W+++++ R+ +G    R+ID 
Sbjct: 314 AALMIMDDTVDMVPVVRRLTQFYAHESCGKCTPCREGTPWLVQILSRMERGQGDPRDIDT 373

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L +   NI GR  CAL D A  PI   IK+F
Sbjct: 374 LTDACDNIFGRAFCALADGAVSPIVSGIKHF 404


>gi|33597906|ref|NP_885549.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           parapertussis 12822]
 gi|33574335|emb|CAE38671.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           parapertussis]
          Length = 455

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/403 (54%), Positives = 271/403 (67%), Gaps = 8/403 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L + + RG ++ + KIL  G   + +I EVKASGLRGRGGAGF TG+KWSFMP+    + 
Sbjct: 48  LQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 106

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV N+DE EPGT KDRDI+R  PH +IEG VIA++A+G    + Y+ GE     E  +
Sbjct: 107 KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMVIAAYAMGISVGYNYIHGEIFEVYERFE 166

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++E  A+G LG +  LG D    +H  HG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 167 EALEEARAAGFLG-DKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPF 225

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTKLFSISG V  P   E
Sbjct: 226 PASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERPGNYE 285

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M   F +L+E   GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS L
Sbjct: 286 IPMGTPFSKLLEL-AGGMRGG-RKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAGSML 343

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  ++
Sbjct: 344 GSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGRPEDL 403

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           D+L  V+ NI GRTICALGDAAA P++  IK+FR      I+ 
Sbjct: 404 DMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEH 446


>gi|89900291|ref|YP_522762.1| NADH-quinone oxidoreductase subunit F [Rhodoferax ferrireducens
           T118]
 gi|89345028|gb|ABD69231.1| NADH-quinone oxidoreductase, F subunit [Rhodoferax ferrireducens
           T118]
          Length = 458

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/428 (51%), Positives = 281/428 (65%), Gaps = 21/428 (4%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR--------------DWIINEVKASGL 52
           +I+ +L G     L D  SRG +  + KIL K                D +I  VK SGL
Sbjct: 27  QIYADLNG-SNWHLKDYESRGGYQALRKILAKNSGVTADDVTASGMTPDQVIAVVKESGL 85

Query: 53  RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           RGRGGAGF TG+KWSFMP+  + +  YLV N+DE EPGTCKDR+I++  PH +IEG +IA
Sbjct: 86  RGRGGAGFPTGLKWSFMPRQYAGQ-KYLVCNSDEGEPGTCKDREILQFNPHMVIEGMIIA 144

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAY 170
           ++A+G    + Y+ GE  +     + A++E  A+GLLG+N  LG D    +H  HG GAY
Sbjct: 145 AYAMGIAVGYNYIHGEIFKTYLRFEEAIEEARAAGLLGNNI-LGSDFSFQLHAAHGYGAY 203

Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230
           ICGEET+LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y  
Sbjct: 204 ICGEETSLLESLEGKKGQPRYKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLA 263

Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
            G+ N+ GTK+FSISG V  P   E  M   F +L+E   GG+R G   L AVIPGGSS 
Sbjct: 264 CGKPNSGGTKIFSISGDVELPGNYEVPMGTPFSQLLEL-AGGVRSG-RQLKAVIPGGSSS 321

Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
           P LP   M    MDYD + + GS LG+ AVIV+D S  ++K++ RLS FY HESCGQCTP
Sbjct: 322 PVLPGSIMMDCTMDYDSIAKAGSMLGSGAVIVLDDSRCMVKSLQRLSYFYMHESCGQCTP 381

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
           CREGTGW+ RV++R+  G     ++DLL  V++NI GRTICALGDAAA P++ +IK+FRP
Sbjct: 382 CREGTGWLSRVVDRIENGHGHVTDLDLLDNVAENIMGRTICALGDAAAMPVRAMIKHFRP 441

Query: 411 LIEERIDQ 418
             E  ++ 
Sbjct: 442 EFEYHVEH 449


>gi|325983284|ref|YP_004295686.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas sp. AL212]
 gi|325532803|gb|ADZ27524.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas sp. AL212]
          Length = 425

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/369 (54%), Positives = 260/369 (70%), Gaps = 6/369 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I EVK S LRGRGGAGF TG+KWSFMPK   +   Y+V N+DE EPGT KDRDI+R+ P
Sbjct: 47  VIEEVKKSALRGRGGAGFPTGLKWSFMPK-GYEGDKYIVCNSDEGEPGTFKDRDILRYNP 105

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVD 160
           H LIEG +IA++A+G    + Y+ GE     E ++ AV+E  ++G LG+N  LG  +   
Sbjct: 106 HILIEGMIIAAYAMGVKAGYNYIHGEIWETYERMEDAVEEARSAGYLGNNI-LGSTFSFQ 164

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           +  HHG GAYICGEETALLES+EGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I
Sbjct: 165 LYNHHGYGAYICGEETALLESIEGKKGQPRFKPPFPANYGLYGKPTTINNTETFASVPWI 224

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           +R     Y   G+ NN GTK+FS+SGHVN P   E  +  +F +L+E   GG+RGG   L
Sbjct: 225 IRNSGEKYLQLGKPNNGGTKIFSVSGHVNKPGNYEIPLGTSFAKLLEL-AGGMRGG-RKL 282

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
              IPGGSS+P LP   M    MDYD + + GS LG+ AVI+MD +T +++A+ RLS FY
Sbjct: 283 KGCIPGGSSMPVLPGDIMMQTDMDYDSIAKAGSMLGSGAVIIMDETTCMVRALERLSYFY 342

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCGQCTPCREGTGW+ R++ R+  G  +  ++DLL  ++ NI+GRTICALGDAAA P
Sbjct: 343 YEESCGQCTPCREGTGWLYRIVNRIEHGKGRSEDLDLLDNIADNIQGRTICALGDAAAMP 402

Query: 401 IQGLIKNFR 409
           ++ ++++FR
Sbjct: 403 VRAMLQHFR 411


>gi|307730335|ref|YP_003907559.1| NADH-quinone oxidoreductase subunit F [Burkholderia sp. CCGE1003]
 gi|307584870|gb|ADN58268.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1003]
          Length = 442

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/414 (50%), Positives = 278/414 (67%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSISG
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSISG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+RGG   + AVIPGGSS P +P   M    +DYD
Sbjct: 253 DVERPGNYEVPLGTPFAKLMEL-AGGMRGG-RKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G+ ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 371 HGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|254251866|ref|ZP_04945184.1| NADH dehydrogenase [Burkholderia dolosa AUO158]
 gi|124894475|gb|EAY68355.1| NADH dehydrogenase [Burkholderia dolosa AUO158]
          Length = 436

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/415 (50%), Positives = 278/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE  A+G LG N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEIGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVVPGDVMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + ++GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|319761767|ref|YP_004125704.1| NADH-quinone oxidoreductase, f subunit [Alicycliphilus
           denitrificans BC]
 gi|317116328|gb|ADU98816.1| NADH-quinone oxidoreductase, F subunit [Alicycliphilus
           denitrificans BC]
          Length = 449

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/405 (53%), Positives = 275/405 (67%), Gaps = 12/405 (2%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65
           GL G   S+ D  +RG +  + KIL K       +D +I  VK SGLRGRGGAGF TG+K
Sbjct: 32  GLNGSNWSIKDYEARGGYAALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFPTGLK 91

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    + H LV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G    + Y+
Sbjct: 92  WSFMPRQFPRQKH-LVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISLGYNYI 150

Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE  +  E  +AA++E  A+G LGSN     +   +  HHG GAYICGEETALLESLEG
Sbjct: 151 HGEIFQVYERFEAALEEARAAGYLGSNIMDSDFSFQLHAHHGFGAYICGEETALLESLEG 210

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS+
Sbjct: 211 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIFSV 270

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  M    MD
Sbjct: 271 SGDVERPGNYEIPLGTPFAKLLEL-AGGVRKG-RQLKAVIPGGSSAPVLPASIMMECTMD 328

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD S D+++++ RLS FY HESCGQCTPCREGTGW+ RV+ R
Sbjct: 329 YDSIAKAGSMLGSGAVIVMDDSRDMVESLMRLSYFYMHESCGQCTPCREGTGWLWRVVHR 388

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +  G  +  +I++L  V+ NI GRTICALGDAAA P++ +IK+FR
Sbjct: 389 IQHGQGRVEDIEVLDSVAFNIMGRTICALGDAAAMPVRAMIKHFR 433


>gi|295676042|ref|YP_003604566.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1002]
 gi|295435885|gb|ADG15055.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1002]
          Length = 441

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/414 (50%), Positives = 276/414 (66%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVARGGYAQLRRILEEKIAPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     +  + A++E   +G LG N    G+   +  HHG GAYICGEETALLES+EGKK
Sbjct: 133 EIWEVYKRFEEALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESIEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+SG
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDYD
Sbjct: 253 DVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDMMMQTDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G+ ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 371 HGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|86739256|ref|YP_479656.1| NADH-quinone oxidoreductase,subunit F [Frankia sp. CcI3]
 gi|86566118|gb|ABD09927.1| NADH dehydrogenase subunit F [Frankia sp. CcI3]
          Length = 443

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/370 (54%), Positives = 258/370 (69%), Gaps = 5/370 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  VK SGLRGRGGAGF TGMKW F+P+    RPHYLV+NADE EPGTCKD  +M  
Sbjct: 40  DDLIKLVKDSGLRGRGGAGFPTGMKWGFIPQ-GDGRPHYLVINADEGEPGTCKDAPLMMA 98

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH+LIEG +IA++A+ A  AF+Y+RGE I     LQAAV E Y +G LG +    G+D+
Sbjct: 99  DPHSLIEGIIIAAYAVRAGRAFVYLRGELIHAARRLQAAVAEAYRAGYLGRDILGSGFDL 158

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  PT VNNVE+IA VP 
Sbjct: 159 DLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPATHGLYASPTVVNNVETIASVPY 218

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  G  W+   GRE + G K++S+SGHV  P   E  M  T  EL++   GG+RGG   
Sbjct: 219 IVNYGVDWFRSMGRERSPGPKIYSLSGHVTRPGQYEAPMGTTLRELLDL-AGGVRGG-HG 276

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A  PGGSS P L A  +  A +D++G++E GS LGTAA+++MD + D++K + RL+ F
Sbjct: 277 LKAWTPGGSSTPMLTAEHLD-APLDFEGMQEAGSLLGTAALMIMDDTVDMLKVVRRLTQF 335

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           Y HESCG+CTPCREGT WM++++ R+ +G     ++D L +   NI GR  CAL D A  
Sbjct: 336 YAHESCGKCTPCREGTTWMVQILSRMERGQGDAEDVDTLVDACDNIFGRAFCALADGATS 395

Query: 400 PIQGLIKNFR 409
           PI   IK FR
Sbjct: 396 PIVSGIKYFR 405


>gi|58582853|ref|YP_201869.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84624719|ref|YP_452091.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188577691|ref|YP_001914620.1| NADH-quinone oxidoreductase, f subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58427447|gb|AAW76484.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84368659|dbj|BAE69817.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522143|gb|ACD60088.1| NADH-quinone oxidoreductase, f subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 444

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF TG+K
Sbjct: 21  VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKASNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L  V+PGG S+P L A Q+ G  M
Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|323525441|ref|YP_004227594.1| NADH-quinone oxidoreductase subunit F [Burkholderia sp. CCGE1001]
 gi|323382443|gb|ADX54534.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1001]
          Length = 442

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/414 (50%), Positives = 276/414 (66%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSISG
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSISG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    +DYD
Sbjct: 253 DVERPGNYEVPLGTPFATLMEL-AGGMRGG-RKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G+ +  ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 371 HGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|29654734|ref|NP_820426.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA
           493]
 gi|161830422|ref|YP_001597288.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA
           331]
 gi|29542002|gb|AAO90940.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii RSA 493]
 gi|161762289|gb|ABX77931.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA
           331]
          Length = 422

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/405 (51%), Positives = 273/405 (67%), Gaps = 10/405 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L    S G +  + KIL++    + IINE+K S LRGRGGAGF TG+KWSF+P+   D+
Sbjct: 18  TLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKWSFIPR---DK 74

Query: 77  P--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           P   Y++ N+DESEPGT KDRDI+R  PH ++EG  IA + +GA   + ++RGEF    +
Sbjct: 75  PGEKYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLRGEFWEPFD 134

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
             + A+ +   +GL+G N    G D++I  H  AGAYICGEETAL+ SLEGK+G PR KP
Sbjct: 135 RCEQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGKRGWPRFKP 194

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPAN GLY  P+ +NN E+ A VP IL +G  W++  G   N GTK+FS+SGHV  P  
Sbjct: 195 PFPANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVSGHVAKPGN 254

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  + I F +L+    GG+R G   L AVIPGGSS+P LPA  M  AIM +DGL E GS
Sbjct: 255 YEVPLGIPFADLL-ALAGGMREG-SELKAVIPGGSSMPVLPAEVMMKAIMSFDGLVEAGS 312

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LG+  V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+ KG   KR
Sbjct: 313 MLGSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRIEKGEGTKR 372

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L  V+K IEGRTICA G+AAAWP+ G++K+F    E  +  
Sbjct: 373 DIEQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTH 417


>gi|167627158|ref|YP_001677658.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597159|gb|ABZ87157.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 424

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/404 (51%), Positives = 263/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+IMR+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNTPGQ-KYVVCNSDEGEPGTCKDREIMRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLGSN K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGSNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLYG PT +NN E+ A  P IL+ G  W+   G E + GTKLF IS
Sbjct: 186 KGRPRFKPPFPAFKGLYGRPTNINNTETYASAPVILQHGGQWFKNLGTEKSGGTKLFCIS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV +   +E  +   F +++E  CGG+R G   L AVIPGGSS   L   +M    MDY
Sbjct: 246 GHVKHQKVMEIGLGTPFKDVLE-MCGGVRNG-HKLKAVIPGGSSSKILTGEEMLKVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + + E GS LG+ AV+V+D +T ++K + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAEAGSMLGSGAVVVLDETTCMVKTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR
Sbjct: 364 VAGEGKPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYINKFR 407


>gi|241667720|ref|ZP_04755298.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876264|ref|ZP_05248974.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842285|gb|EET20699.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 424

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/404 (51%), Positives = 263/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+IMR+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNTPGQ-KYVVCNSDEGEPGTCKDREIMRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLGSN K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGSNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLYG PT +NN E+ A  P IL+ G  W+   G E + GTKLF IS
Sbjct: 186 KGRPRFKPPFPAFKGLYGRPTNINNTETYASAPVILQHGGQWFKNLGTEKSGGTKLFCIS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV +   +E  +   F +++E  CGG+R G   L AVIPGGSS   L   +M    MDY
Sbjct: 246 GHVKHQKVMEIGLGTPFKDVLE-MCGGVRNG-HKLKAVIPGGSSSKILTGEEMLKVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + + E GS LG+ AV+V+D +T ++K + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAEAGSMLGSGAVVVLDETTCMVKTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR
Sbjct: 364 VAGDGKPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYINKFR 407


>gi|134301251|ref|YP_001121219.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049028|gb|ABO46099.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 424

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/404 (51%), Positives = 265/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G + L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T I++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC+LGDAAAWP+Q  I  FR
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICSLGDAAAWPVQSYIDKFR 407


>gi|332184791|gb|AEE27045.1| NADH-ubiquinone oxidoreductase chain F [Francisella cf. novicida
           3523]
          Length = 424

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGGIR G + L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGIRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T I++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407


>gi|294788075|ref|ZP_06753319.1| NADH oxidoreductase (quinone), F subunit [Simonsiella muelleri ATCC
           29453]
 gi|294484368|gb|EFG32051.1| NADH oxidoreductase (quinone), F subunit [Simonsiella muelleri ATCC
           29453]
          Length = 433

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/404 (51%), Positives = 266/404 (65%), Gaps = 8/404 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L++   RG +  + KIL +   +  +I+E+KASGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLAEYQVRGGYQALRKILTEKIPQTDVIDEMKASGLRGRGGAGFPTGLKWSFMPRSFPGA 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAEAGYNYIHGEIFEGFQLF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           + A+ E   +G LG N  +G  +  ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EKALQEARDAGFLGKNI-MGSEFSFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A VP I+R G   ++  G E+  GTKLFSISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIIRDGGKTFADKGIESAGGTKLFSISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E ++   F EL+    GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVALGTPFSELL-AMAGGVRGG-KKLKAVIPGGSSAPVLPADIMMSCNMDYDSIAKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVIVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  +
Sbjct: 318 LGSGAVIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRIVHRIAMGKGRPED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +DLL  V  N+ GRTICAL DAA +P++   K+FR   E  I+ 
Sbjct: 378 LDLLDSVGNNMAGRTICALADAAVFPVRSFTKHFREEFEHYIEH 421


>gi|325520402|gb|EGC99520.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. TJI49]
          Length = 436

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/415 (50%), Positives = 278/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE  A+G LG N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-RKIKAVIPGGSSAPVVPGDIMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + ++GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|209518510|ref|ZP_03267331.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. H160]
 gi|209501055|gb|EEA01090.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. H160]
          Length = 442

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVARGGYAQLRRILEEKIAPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     +  + A++E   +G LG N    G+   +  HHG GAYICGEETALLES+EGKK
Sbjct: 133 EIWEVYKRFEEALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESIEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+SG
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEIGKPNNGGTKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDYD
Sbjct: 253 DVERPGNYEIPLGTPFATLMEL-AGGMRGG-RKIKAVIPGGSSAPVIPGDMMMQTDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRVVNRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G+ ++ ++DLL  V++NI GRTICALGDAAA P++G++K+F    E  +   H
Sbjct: 371 HGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHFWDEFEYHVAHKH 424


>gi|296160634|ref|ZP_06843449.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. Ch1-1]
 gi|295889160|gb|EFG68963.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. Ch1-1]
          Length = 442

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSI+G
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSIAG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDYD
Sbjct: 253 DVERPGNYEIPLGTPFATLMEL-AGGVRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G+ +  ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 371 HGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|134296428|ref|YP_001120163.1| NADH-quinone oxidoreductase, F subunit [Burkholderia vietnamiensis
           G4]
 gi|134139585|gb|ABO55328.1| NADH dehydrogenase subunit F [Burkholderia vietnamiensis G4]
          Length = 436

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE  A+G LG N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    +DY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|254522409|ref|ZP_05134464.1| NADH oxidoreductase (quinone), F subunit [Stenotrophomonas sp.
           SKA14]
 gi|219720000|gb|EED38525.1| NADH oxidoreductase (quinone), F subunit [Stenotrophomonas sp.
           SKA14]
          Length = 446

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/417 (50%), Positives = 272/417 (65%), Gaps = 8/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+    + +I  VKASGLRGRGGAGF TG+K
Sbjct: 21  VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK   +   Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 81  WSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E  + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFEHFEQALADAYANGWLGKNVMGSGVDIDIYGALGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG P+T+NN E+   VP I+R G  W+ G     N G K FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPKCFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFD+L+E   GG+R G   L   IPGG S+P L A +++G  M
Sbjct: 259 VSGCVQNGGNFEVPLGTTFDDLLEM-AGGLRPG-RTLKGAIPGGVSMPVLTAAELKGLPM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD ++ +GSGLG+ AV+V+D S   +K   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTIRALGSGLGSGAVVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I   H
Sbjct: 377 RIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433


>gi|91782617|ref|YP_557823.1| putative NADH dehydrogenase I (chain F), NuoF [Burkholderia
           xenovorans LB400]
 gi|91686571|gb|ABE29771.1| NADH dehydrogenase subunit F [Burkholderia xenovorans LB400]
          Length = 442

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/414 (50%), Positives = 276/414 (66%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSI+G
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSIAG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDYD
Sbjct: 253 DVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G+ +  ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 371 HGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|153207266|ref|ZP_01946030.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154706359|ref|YP_001423961.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii Dugway
           5J108-111]
 gi|212212187|ref|YP_002303123.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuG_Q212]
 gi|212218217|ref|YP_002305004.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuK_Q154]
 gi|120576754|gb|EAX33378.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154355645|gb|ABS77107.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii Dugway
           5J108-111]
 gi|212010597|gb|ACJ17978.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuG_Q212]
 gi|212012479|gb|ACJ19859.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuK_Q154]
          Length = 422

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/405 (51%), Positives = 272/405 (67%), Gaps = 10/405 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L    S G +  + KIL++    + IINE+K S LRGRGGAGF TG+KWSF+P+   D+
Sbjct: 18  TLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKWSFIPR---DK 74

Query: 77  P--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           P   Y++ N+DESEPGT KDRDI+R  PH ++EG  IA + +GA   + ++RGEF     
Sbjct: 75  PGEKYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLRGEFWEPFN 134

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
             + A+ +   +GL+G N    G D++I  H  AGAYICGEETAL+ SLEGK+G PR KP
Sbjct: 135 RCEQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGKRGWPRFKP 194

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPAN GLY  P+ +NN E+ A VP IL +G  W++  G   N GTK+FS+SGHV  P  
Sbjct: 195 PFPANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVSGHVAKPGN 254

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  + I F +L+    GG+R G   L AVIPGGSS+P LPA  M  AIM +DGL E GS
Sbjct: 255 YEVPLGIPFADLL-ALAGGMREG-SELKAVIPGGSSMPVLPAEVMMKAIMSFDGLVEAGS 312

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LG+  V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+ KG   KR
Sbjct: 313 MLGSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRIEKGEGTKR 372

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L  V+K IEGRTICA G+AAAWP+ G++K+F    E  +  
Sbjct: 373 DIEQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTH 417


>gi|33592012|ref|NP_879656.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           pertussis Tohama I]
 gi|33602811|ref|NP_890371.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           bronchiseptica RB50]
 gi|33571656|emb|CAE41149.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           pertussis Tohama I]
 gi|33577253|emb|CAE35810.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           bronchiseptica RB50]
 gi|332381428|gb|AEE66275.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           pertussis CS]
          Length = 455

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/403 (53%), Positives = 270/403 (66%), Gaps = 8/403 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L + + RG ++ + KIL  G   + +I EVKASGLRGRGGAGF TG+KWSFMP+    + 
Sbjct: 48  LQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 106

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    + Y+ GE     E  +
Sbjct: 107 KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYERFE 166

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++E  A+G LG +  LG D    +H  HG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 167 EALEEARAAGFLG-DKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPF 225

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTKLFSISG V  P   E
Sbjct: 226 PASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERPGNYE 285

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M   F +L+E   GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS L
Sbjct: 286 IPMGTPFSKLLEL-AGGMRGG-RKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAGSML 343

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  ++
Sbjct: 344 GSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGRPEDL 403

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           D+L  V+ NI GRTICALGDAAA P++  IK+FR      I+ 
Sbjct: 404 DMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEH 446


>gi|289665178|ref|ZP_06486759.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289667375|ref|ZP_06488450.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 444

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF TG+K
Sbjct: 21  VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L  V+PGG S+P L A Q+ G  M
Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|21243427|ref|NP_643009.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78048404|ref|YP_364579.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|294624673|ref|ZP_06703343.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294666772|ref|ZP_06732006.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325924680|ref|ZP_08186118.1| NADH dehydrogenase subunit F [Xanthomonas perforans 91-118]
 gi|21108980|gb|AAM37545.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78036834|emb|CAJ24527.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|292601029|gb|EFF45096.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292603433|gb|EFF46850.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325544886|gb|EGD16231.1| NADH dehydrogenase subunit F [Xanthomonas perforans 91-118]
          Length = 444

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF TG+K
Sbjct: 21  VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L  V+PGG S+P L A Q+ G  M
Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|107023183|ref|YP_621510.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia AU
           1054]
 gi|116690265|ref|YP_835888.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia
           HI2424]
 gi|105893372|gb|ABF76537.1| NADH dehydrogenase subunit F [Burkholderia cenocepacia AU 1054]
 gi|116648354|gb|ABK08995.1| NADH dehydrogenase subunit F [Burkholderia cenocepacia HI2424]
          Length = 436

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNIMGTEFSFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+SG
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    +DYD
Sbjct: 253 DVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 371 HGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|21231955|ref|NP_637872.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767918|ref|YP_242680.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|21113686|gb|AAM41796.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573250|gb|AAY48660.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 444

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF TG+K
Sbjct: 21  VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPGDVIEMVKASNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L  V+PGG S+P L A Q+ G  M
Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|163855992|ref|YP_001630290.1| NADH dehydrogenase I, 51 kDa subunit, chain F [Bordetella petrii
           DSM 12804]
 gi|163259720|emb|CAP42021.1| NADH dehydrogenase I, 51 kDa subunit, chain F [Bordetella petrii]
          Length = 455

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/403 (53%), Positives = 272/403 (67%), Gaps = 8/403 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L D + RG ++ + KIL  G   + +I EVKASGLRGRGGAGF TG+KWSFMP+    + 
Sbjct: 48  LQDYVKRGGYEALRKILSSGMKPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 106

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    + Y+ GE     +  +
Sbjct: 107 KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYQRFE 166

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++E  A+G LG N  LG +    +H  HG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 167 EALEEARAAGFLGDNI-LGSEFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPF 225

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FSI+G V  P   E
Sbjct: 226 PASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKVFSITGDVERPGNYE 285

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F +L+E   GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS L
Sbjct: 286 IPLGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVLPADIMMDITMDYDAIAKAGSML 343

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  ++ ++
Sbjct: 344 GSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIEHGQGRQEDL 403

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           DLL  V+ NI GRTICALGDAAA P++G +K++R      I+ 
Sbjct: 404 DLLDSVAGNIMGRTICALGDAAAMPVRGFLKHYRDEFAHHIEH 446


>gi|62261001|gb|AAX77952.1| unknown protein [synthetic construct]
          Length = 459

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 33  FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 92

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 93  SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 151

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 152 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 211

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 212 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 271

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G + L AVIPGGSS   L A +M    MDY
Sbjct: 272 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 329

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T I++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 330 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 389

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR
Sbjct: 390 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 433


>gi|56707216|ref|YP_169112.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669686|ref|YP_666243.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|187930993|ref|YP_001890977.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224456277|ref|ZP_03664750.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371432|ref|ZP_04987433.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874054|ref|ZP_05246764.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603708|emb|CAG44669.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320019|emb|CAL08052.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569671|gb|EDN35325.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|187711902|gb|ACD30199.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254840053|gb|EET18489.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158324|gb|ADA77715.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 424

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G + L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T I++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407


>gi|325915544|ref|ZP_08177855.1| NADH dehydrogenase subunit F [Xanthomonas vesicatoria ATCC 35937]
 gi|325538260|gb|EGD09945.1| NADH dehydrogenase subunit F [Xanthomonas vesicatoria ATCC 35937]
          Length = 429

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF TG+K
Sbjct: 6   VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPTGLK 65

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 66  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 123

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 124 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 183

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K+FS
Sbjct: 184 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 243

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L  V+PGG S+P L A Q+ G  M
Sbjct: 244 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 301

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 302 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 361

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 362 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 406


>gi|325921406|ref|ZP_08183263.1| NADH dehydrogenase subunit F [Xanthomonas gardneri ATCC 19865]
 gi|325548164|gb|EGD19161.1| NADH dehydrogenase subunit F [Xanthomonas gardneri ATCC 19865]
          Length = 444

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF TG+K
Sbjct: 21  VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKASNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFENFELALVDAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L  V+PGG S+P L A Q+ G  M
Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RTLKGVVPGGVSMPVLKADQVAGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|188991034|ref|YP_001903044.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732794|emb|CAP50988.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris]
          Length = 444

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/405 (51%), Positives = 271/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF TG+K
Sbjct: 21  VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L  V+PGG S+P L A Q+ G  M
Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|325130975|gb|EGC53702.1| NADH:quinone oxidoreductase, F subunit [Neisseria meningitidis
           OX99.30304]
          Length = 431

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 266/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + ++GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKVGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|332968230|gb|EGK07307.1| NADH-quinone oxidoreductase subunit F [Kingella kingae ATCC 23330]
          Length = 433

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/404 (51%), Positives = 265/404 (65%), Gaps = 8/404 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L+   +RG +  + KIL +   +  II+E+KASGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLAAYQARGGYQALRKILTEKIAQTDIIDEIKASGLRGRGGAGFPTGLKWSFMPRSFPG- 80

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 81  AKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAEAGYNYIHGEIFEGFQLF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           + A+ E   +G LG N  +G  +  ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EKALQEARDAGFLGKNI-MGSEFSFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A VP I+R G   ++  G E+  GTKLFSISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIIRDGGKTFADKGIESAGGTKLFSISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E ++   F EL+    GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVALGTPFSELL-AMAGGVRGG-KKLKAVIPGGSSAPVLPADIMMSCNMDYDSIAKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVIVMD    ++KA+ RL+ FY  ESCGQCTPCREGTGW+ RV+ R+  G  +  +
Sbjct: 318 LGSGAVIVMDEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYRVVHRIATGKGRPDD 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++LL  V  N+ GRTICAL DAA +P++   K+FR   E  I  
Sbjct: 378 LELLDSVGNNMAGRTICALADAAVFPVRSFTKHFREEFEHYIKH 421


>gi|299138537|ref|ZP_07031716.1| NADH-quinone oxidoreductase, F subunit [Acidobacterium sp.
           MP5ACTX8]
 gi|298599783|gb|EFI55942.1| NADH-quinone oxidoreductase, F subunit [Acidobacterium sp.
           MP5ACTX8]
          Length = 444

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/415 (49%), Positives = 270/415 (65%), Gaps = 5/415 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           D+ ++ +  +G+    +   +    +  V K +E+G +WI+NE+KASGLRGRGGAGF TG
Sbjct: 9   DEVKVVSRRFGMGAAEIDKYVELDGYKAVQKAIEQGPEWIVNEMKASGLRGRGGAGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+PKV S++P Y++VN DESEPGTCKD  I  H+PH +IEG +IA  AIGA   FI
Sbjct: 69  MKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLHDPHAIIEGTMIAGLAIGAKMGFI 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLES 181
           Y+RGE+    + ++ AV + YA G LG N   K G D DII   GAGAY  GEE+AL+ES
Sbjct: 128 YLRGEYRYLLKIVEKAVADAYAKGFLGKNIFGKEGVDFDIITQTGAGAYEVGEESALMES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK+G PR+KPPFPA VGLYG PT +NN E+IA  P IL  G   Y+  G E N GT+L
Sbjct: 188 LEGKRGVPRIKPPFPAVVGLYGGPTVINNAETIANAPHILLMGGEAYAKLGSERNGGTRL 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ISGHV  P   E  M  +  + I +  GGI+GG   L AV+PGGSS P L A ++   
Sbjct: 248 FGISGHVERPGVYELPMGYSLRKAIYEVAGGIKGG-KQLKAVVPGGSSCPVLKADEIDVG 306

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+D + + G+ LG+  ++V+D S  I++   R   FY+HESCG C PCREGT W+ + 
Sbjct: 307 -LDFDQMGKAGTMLGSGGIVVLDESVSIVEFALRTIRFYQHESCGWCIPCREGTDWLKKT 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + R   G   K++ID +  +++N+ GRT C LGDAAA P  G IK FR   EE +
Sbjct: 366 LTRFHAGGGNKKDIDNIQYLAENMLGRTFCPLGDAAAMPTIGFIKKFRSEFEEYL 420


>gi|261400476|ref|ZP_05986601.1| NADH oxidoreductase, F subunit [Neisseria lactamica ATCC 23970]
 gi|269209735|gb|EEZ76190.1| NADH oxidoreductase, F subunit [Neisseria lactamica ATCC 23970]
          Length = 431

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG D++  +  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDLEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|78067041|ref|YP_369810.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. 383]
 gi|254247662|ref|ZP_04940983.1| NADH:ubiquinone oxidoreductase [Burkholderia cenocepacia PC184]
 gi|77967786|gb|ABB09166.1| NADH dehydrogenase subunit F [Burkholderia sp. 383]
 gi|124872438|gb|EAY64154.1| NADH:ubiquinone oxidoreductase [Burkholderia cenocepacia PC184]
          Length = 436

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE  A+G LG N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    +DY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|255067286|ref|ZP_05319141.1| NADH oxidoreductase, F subunit [Neisseria sicca ATCC 29256]
 gi|255048437|gb|EET43901.1| NADH oxidoreductase, F subunit [Neisseria sicca ATCC 29256]
          Length = 431

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + +IL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYSALRRILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIVRDGGQTFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEIL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|170733604|ref|YP_001765551.1| NADH-quinone oxidoreductase,subunit F [Burkholderia cenocepacia
           MC0-3]
 gi|169816846|gb|ACA91429.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 436

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE  A+G LG N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    +DY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KRIKAVIPGGSSAPVIPGDIMMQTDLDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|261391778|emb|CAX49233.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F;
           NDH-1, chain F) [Neisseria meningitidis 8013]
          Length = 431

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|187477546|ref|YP_785570.1| NADH dehydrogenase I subunit F [Bordetella avium 197N]
 gi|115422132|emb|CAJ48656.1| NADH dehydrogenase I chain F [Bordetella avium 197N]
          Length = 455

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/413 (52%), Positives = 277/413 (67%), Gaps = 10/413 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L++ + RG ++ + KIL  G   + +I EVKASGLRGRGGAGF TG+KWS
Sbjct: 38  LEGLDGDNWRLAEYVKRGGYEALRKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLKWS 97

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    + Y+ G
Sbjct: 98  FMPRAFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHG 156

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGK 185
           E     E  + A++E  A+G LG +  LG D +  +H  HG GAYICGEETALLESLEGK
Sbjct: 157 EIFEVYERFEEALEEARAAGFLG-DKLLGSDFNFQLHAFHGYGAYICGEETALLESLEGK 215

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FSI+
Sbjct: 216 KGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKIFSIT 275

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  M   F +L+E   GG+RGG   L AVIPGGSS P LPA  +    MDY
Sbjct: 276 GDVERPGNYEIPMGTPFSKLLEL-AGGMRGG-KKLKAVIPGGSSAPVLPADIIMECTMDY 333

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+
Sbjct: 334 DSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRI 393

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             G  +  ++D+L  V+ NI GRTICALGDAAA P++  IK+FR      I+ 
Sbjct: 394 ETGQGRAEDLDMLDTVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEH 446


>gi|170696394|ref|ZP_02887523.1| NADH-quinone oxidoreductase, F subunit [Burkholderia graminis
           C4D1M]
 gi|170138722|gb|EDT06921.1| NADH-quinone oxidoreductase, F subunit [Burkholderia graminis
           C4D1M]
          Length = 442

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/414 (50%), Positives = 276/414 (66%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSISG
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSISG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L++   GG+RGG   + AVIPGGSS P +P   M    +DYD
Sbjct: 253 DVERPGNYEVPLGTPFATLMDL-AGGMRGG-RKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G+ +  ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 371 HGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|241760593|ref|ZP_04758685.1| NADH oxidoreductase, f subunit [Neisseria flavescens SK114]
 gi|261379575|ref|ZP_05984148.1| NADH oxidoreductase, F subunit [Neisseria subflava NJ9703]
 gi|241318774|gb|EER55300.1| NADH oxidoreductase, f subunit [Neisseria flavescens SK114]
 gi|284798049|gb|EFC53396.1| NADH oxidoreductase, F subunit [Neisseria subflava NJ9703]
          Length = 431

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|241763293|ref|ZP_04761350.1| NADH-quinone oxidoreductase, F subunit [Acidovorax delafieldii 2AN]
 gi|241367568|gb|EER61855.1| NADH-quinone oxidoreductase, F subunit [Acidovorax delafieldii 2AN]
          Length = 451

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/417 (51%), Positives = 282/417 (67%), Gaps = 11/417 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60
           +I+ +L G    S+ D  +RG +  +  IL K       +D +I  VK SGLRGRGGAGF
Sbjct: 28  QIYADLNG-SNWSIKDYEARGGYHALRTILGKDGGEGLTQDQVIATVKESGLRGRGGAGF 86

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+    +  YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G   
Sbjct: 87  PTGLKWSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGITV 145

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            + Y+ GE  +  E  +AA++E  A+G LG+     G+   +  HHG GAYICGEETALL
Sbjct: 146 GYNYIHGEIFQVYERFEAALEEARAAGYLGNGILGTGFSFQLHAHHGFGAYICGEETALL 205

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN GT
Sbjct: 206 ESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNGGT 265

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS+SG V  P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  + 
Sbjct: 266 KIFSVSGDVERPGNYEIPLGTPFSKLLEL-AGGVRTG-RQLKAVIPGGSSSPVLPASIIM 323

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW+ 
Sbjct: 324 DCTMDYDSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLW 383

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+++R+ +G  +  ++D+L  V+ NI GRTICALGDAAA P++ +IK+FRP  E  I
Sbjct: 384 RLVDRIHRGEGRPADMDVLDSVAGNIMGRTICALGDAAAMPVRAMIKHFRPEFEALI 440


>gi|158317831|ref|YP_001510339.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EAN1pec]
 gi|158113236|gb|ABW15433.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EAN1pec]
          Length = 447

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/382 (52%), Positives = 263/382 (68%), Gaps = 5/382 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  + + L +  D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLV+NADE E
Sbjct: 28  YQGLRRALAQSPDDLIKLVKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVINADEGE 86

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  +M+ +PH+LIEG VIA++A+ A+ AFIY+RGE I     L+AAV E Y +G 
Sbjct: 87  PGTCKDAPLMKADPHSLIEGIVIAAYAVRANRAFIYLRGELIHAGRRLRAAVAEAYRAGY 146

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG +    G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  PT 
Sbjct: 147 LGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPATHGLYASPTV 206

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+IA VP I+  G  W+   GRE   G K++S+SGHV +P   E  M  T  EL++
Sbjct: 207 VNNVETIATVPFIVNYGVDWFRSMGRERAPGPKIYSLSGHVTHPGQYEAPMGTTLRELLD 266

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+ GG   L A  PGGSS P L A  +    +D++G++E GS LGTAA+++MD S 
Sbjct: 267 M-AGGVLGG-RKLKAWTPGGSSTPLLTADHLD-VPLDFEGVQEAGSLLGTAALMIMDDSV 323

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           D++K + RL+ FY HESCG+CTPCREGT WM++++ R+ +G     ++D L +   NI G
Sbjct: 324 DMLKIVRRLTQFYAHESCGKCTPCREGTTWMVQILSRMERGQGDPDDVDTLVDACDNIFG 383

Query: 388 RTICALGDAAAWPIQGLIKNFR 409
           R  CAL D A  PI   IK FR
Sbjct: 384 RAFCALADGATSPIVSGIKFFR 405


>gi|171316308|ref|ZP_02905529.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           MEX-5]
 gi|171098534|gb|EDT43335.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           MEX-5]
          Length = 436

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE  A+G LG N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    +DY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-RKIKAVIPGGSSAPVIPGDIMMQTDLDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|238023164|ref|ZP_04603590.1| hypothetical protein GCWU000324_03090 [Kingella oralis ATCC 51147]
 gi|237865547|gb|EEP66687.1| hypothetical protein GCWU000324_03090 [Kingella oralis ATCC 51147]
          Length = 431

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 261/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KI+ +   +D IINE+K S LRGRGGAGF TG+KWSFMP+    +
Sbjct: 22  TLDEYIKRGGYQALRKIISEKTPQDDIINELKTSNLRGRGGAGFPTGLKWSFMPRAFEGQ 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +I  + +GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIILFNPHALIEGMIIGGYTMGASAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+ +   + LLG N  LG D   ++  HHG GAY+CGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALAQAREANLLGQNI-LGSDFSFELFAHHGYGAYVCGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP ILR G   ++  G E   GTKLFSISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFILRDGGQTFADIGIEKAGGTKLFSISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F EL+    GG+RGG   L AVIPGGSS P LPA  +    MDYD + + GS 
Sbjct: 260 EIPLGTPFAELL-AMAGGVRGG-KKLKAVIPGGSSAPVLPADIIMQINMDYDSIAKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVIVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  +
Sbjct: 318 LGSGAVIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRIVHRIANGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V  N+ GRTICAL DAA +P++G  K+FR
Sbjct: 378 LDLLDSVGNNMAGRTICALADAAVFPVRGFTKHFR 412


>gi|254368970|ref|ZP_04984983.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121891|gb|EDO66061.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 424

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G + L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T +++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407


>gi|170698114|ref|ZP_02889194.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           IOP40-10]
 gi|172061204|ref|YP_001808856.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           MC40-6]
 gi|170136972|gb|EDT05220.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171993721|gb|ACB64640.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           MC40-6]
          Length = 440

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE  A+G LG N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    +DY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-RKIKAVIPGGSSAPVIPGDIMMQTDLDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|59802067|ref|YP_208779.1| hypothetical protein NGO1746 [Neisseria gonorrhoeae FA 1090]
 gi|194099642|ref|YP_002002773.1| NuoF [Neisseria gonorrhoeae NCCP11945]
 gi|239999839|ref|ZP_04719763.1| NuoF [Neisseria gonorrhoeae 35/02]
 gi|240014998|ref|ZP_04721911.1| NuoF [Neisseria gonorrhoeae DGI18]
 gi|240017446|ref|ZP_04723986.1| NuoF [Neisseria gonorrhoeae FA6140]
 gi|240081585|ref|ZP_04726128.1| NuoF [Neisseria gonorrhoeae FA19]
 gi|240113867|ref|ZP_04728357.1| NuoF [Neisseria gonorrhoeae MS11]
 gi|240116598|ref|ZP_04730660.1| NuoF [Neisseria gonorrhoeae PID18]
 gi|240118822|ref|ZP_04732884.1| NuoF [Neisseria gonorrhoeae PID1]
 gi|240122067|ref|ZP_04735029.1| NuoF [Neisseria gonorrhoeae PID24-1]
 gi|240124361|ref|ZP_04737317.1| NuoF [Neisseria gonorrhoeae PID332]
 gi|240126573|ref|ZP_04739459.1| NuoF [Neisseria gonorrhoeae SK-92-679]
 gi|240129038|ref|ZP_04741699.1| NuoF [Neisseria gonorrhoeae SK-93-1035]
 gi|254494622|ref|ZP_05107793.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
 gi|260439641|ref|ZP_05793457.1| NuoF [Neisseria gonorrhoeae DGI2]
 gi|268595649|ref|ZP_06129816.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae 35/02]
 gi|268597681|ref|ZP_06131848.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae FA19]
 gi|268599933|ref|ZP_06134100.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
 gi|268602267|ref|ZP_06136434.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
 gi|268604533|ref|ZP_06138700.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
 gi|268682988|ref|ZP_06149850.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
 gi|268685153|ref|ZP_06152015.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
 gi|268687416|ref|ZP_06154278.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291042882|ref|ZP_06568623.1| NADH-quinone oxidoreductase subunit F [Neisseria gonorrhoeae DGI2]
 gi|293398107|ref|ZP_06642312.1| NADH oxidoreductase (quinone), F subunit [Neisseria gonorrhoeae
           F62]
 gi|59718962|gb|AAW90367.1| putative NADH dehydrogenase I chain F [Neisseria gonorrhoeae FA
           1090]
 gi|193934932|gb|ACF30756.1| NuoF [Neisseria gonorrhoeae NCCP11945]
 gi|226513662|gb|EEH63007.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
 gi|268549038|gb|EEZ44456.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae 35/02]
 gi|268551469|gb|EEZ46488.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae FA19]
 gi|268584064|gb|EEZ48740.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
 gi|268586398|gb|EEZ51074.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
 gi|268588664|gb|EEZ53340.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
 gi|268623272|gb|EEZ55672.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
 gi|268625437|gb|EEZ57837.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
 gi|268627700|gb|EEZ60100.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291013316|gb|EFE05282.1| NADH-quinone oxidoreductase subunit F [Neisseria gonorrhoeae DGI2]
 gi|291611370|gb|EFF40440.1| NADH oxidoreductase (quinone), F subunit [Neisseria gonorrhoeae
           F62]
 gi|317165127|gb|ADV08668.1| hypothetical protein NGTW08_1711 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 433

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/404 (51%), Positives = 267/404 (66%), Gaps = 8/404 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVRRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFAHYIEH 421


>gi|254375044|ref|ZP_04990524.1| NADH dehydrogenase I subunit F [Francisella novicida GA99-3548]
 gi|151572762|gb|EDN38416.1| NADH dehydrogenase I subunit F [Francisella novicida GA99-3548]
          Length = 424

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G + L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T +++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407


>gi|118498236|ref|YP_899286.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           novicida U112]
 gi|118424142|gb|ABK90532.1| NADH dehydrogenase I, F subunit [Francisella novicida U112]
          Length = 424

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G + L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQKVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T +++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407


>gi|167569427|ref|ZP_02362301.1| NADH-quinone oxidoreductase, F subunit [Burkholderia oklahomensis
           C6786]
          Length = 436

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLTGENWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E        +AA++E   +G LG N    G+   +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIFEVYRRFEAALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+SG
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    +DYD
Sbjct: 253 DVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 371 HGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|15676170|ref|NP_273302.1| NADH dehydrogenase I chain F [Neisseria meningitidis MC58]
 gi|7225468|gb|AAF40700.1| NADH dehydrogenase I, F subunit [Neisseria meningitidis MC58]
 gi|316985174|gb|EFV64126.1| NADH oxidoreductase, F subunit [Neisseria meningitidis H44/76]
 gi|325141082|gb|EGC63585.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           CU385]
 gi|325199449|gb|ADY94904.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           H44/76]
          Length = 433

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|225077023|ref|ZP_03720222.1| hypothetical protein NEIFLAOT_02075 [Neisseria flavescens
           NRL30031/H210]
 gi|224951580|gb|EEG32789.1| hypothetical protein NEIFLAOT_02075 [Neisseria flavescens
           NRL30031/H210]
          Length = 431

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQVFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|206560698|ref|YP_002231463.1| NADH dehydrogenase I chain F [Burkholderia cenocepacia J2315]
 gi|198036740|emb|CAR52640.1| NADH dehydrogenase I chain F [Burkholderia cenocepacia J2315]
          Length = 436

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 277/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE  A+G LG N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    +DY
Sbjct: 252 GDVERPGNYEVPLGTPFAVLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|296313741|ref|ZP_06863682.1| NADH oxidoreductase, F subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839664|gb|EFH23602.1| NADH oxidoreductase, F subunit [Neisseria polysaccharea ATCC 43768]
          Length = 431

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 264/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWI--INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +    I  I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQIDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  +   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|166712609|ref|ZP_02243816.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 444

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/405 (51%), Positives = 270/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+      +I  VK S LRGRGGAGF TG+K
Sbjct: 21  VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKVSNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L  V+PGG S+P L A Q+ G  M
Sbjct: 259 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLRPG-RKLKGVVPGGVSMPVLKADQVAGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|309379798|emb|CBX21574.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 431

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/395 (51%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + +P I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSIPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|261378535|ref|ZP_05983108.1| NADH oxidoreductase, F subunit [Neisseria cinerea ATCC 14685]
 gi|269145085|gb|EEZ71503.1| NADH oxidoreductase, F subunit [Neisseria cinerea ATCC 14685]
          Length = 431

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/395 (51%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  +   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|293603924|ref|ZP_06686339.1| NADH-quinone oxidoreductase subunit F [Achromobacter piechaudii
           ATCC 43553]
 gi|292817761|gb|EFF76827.1| NADH-quinone oxidoreductase subunit F [Achromobacter piechaudii
           ATCC 43553]
          Length = 455

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/403 (53%), Positives = 269/403 (66%), Gaps = 8/403 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L D + RG ++ + KIL  G   + +I EVKASGLRGRGGAGF TG+KWSFMP+    + 
Sbjct: 48  LEDYVKRGGYEALKKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 106

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV N+DE EPGT KDRDI+R  PH +IEG  IA+FA+G    + Y+ GE     E  +
Sbjct: 107 KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAFAMGISVGYNYIHGEIFEVYERFE 166

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++E  A+G LG +  LG D    +H  HG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 167 EALEEARAAGFLG-DKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPF 225

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN E+ A VP I+R     Y   G+ NN GTKLFSI+G V  P   E
Sbjct: 226 PASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTKLFSITGDVERPGNYE 285

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F  L+E   GG+RGG   L AVIPGGSS P LPA  +    MDYD + + GS L
Sbjct: 286 IPLGTPFSTLLEL-AGGMRGG-KKLKAVIPGGSSAPVLPADIIMECTMDYDSIAKAGSML 343

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  ++
Sbjct: 344 GSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGHGRPEDL 403

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           DLL  V+ NI GRTICALGDAAA P++G +K+FR      I+ 
Sbjct: 404 DLLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHIEH 446


>gi|121604335|ref|YP_981664.1| NADH-quinone oxidoreductase subunit F [Polaromonas
           naphthalenivorans CJ2]
 gi|120593304|gb|ABM36743.1| NADH dehydrogenase subunit F [Polaromonas naphthalenivorans CJ2]
          Length = 473

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/420 (53%), Positives = 285/420 (67%), Gaps = 13/420 (3%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60
           +I  NL G     L D  SRG +  + KIL +        D +I EVKA GLRGRGGAGF
Sbjct: 37  QILANLDG-SNWHLGDYESRGGYQALRKILGQDGGAGLTPDQVIAEVKAGGLRGRGGAGF 95

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+    +  YLV N+DE EPGTCKDRDIM++ PH++IEG  IA++A+G   
Sbjct: 96  PTGLKWSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDIMQYNPHSVIEGMAIAAYAMGISV 154

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETAL 178
            + Y+ GE     +  +AA+DE  A+GLLG N  LG + +  +H  HG GAYICGEET L
Sbjct: 155 GYNYIHGEIFATYQRFEAALDEARAAGLLGDN-ILGSNFNFQLHAAHGFGAYICGEETGL 213

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN G
Sbjct: 214 LESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGG 273

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK++S+SG V  P   E  M   F +L+E   GG+R G   L AVIPGGSS P LPA  M
Sbjct: 274 TKIYSVSGDVELPGNYEVPMGTPFAKLLEL-AGGVRKG-RTLKAVIPGGSSSPVLPASSM 331

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW+
Sbjct: 332 MECTMDYDSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWL 391

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RV++R+  G+ ++ ++DLL  V+ NI+GRTICALGDAAA P++ +IK++R   E  I +
Sbjct: 392 WRVVDRIHNGLGRQSDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHYRHEFEAMIPK 451


>gi|317401993|gb|EFV82593.1| NADH dehydrogenase subunit I [Achromobacter xylosoxidans C54]
          Length = 455

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/403 (53%), Positives = 271/403 (67%), Gaps = 8/403 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L+D + RG ++ + KIL  G   + +I EVKASGLRGRGGAGF TG+KWSFMP+    + 
Sbjct: 48  LADYVKRGGYEALRKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPGQ- 106

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    + Y+ GE     E  +
Sbjct: 107 KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYERFE 166

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++E  A+G LG +  LG + +  +H  HG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 167 EALEEARAAGFLG-DRILGSEFNFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPF 225

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN E+ A VP I+R     Y   G+ NN GTKLFSI+G V  P   E
Sbjct: 226 PASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTKLFSITGDVERPGNYE 285

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F  L+E   GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS L
Sbjct: 286 IPLGTPFSTLLEL-AGGMRGG-KKLKAVIPGGSSAPVLPADIMMETTMDYDAIAKAGSML 343

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  ++
Sbjct: 344 GSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGHGRPEDL 403

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           D+L  V+ NI GRTICALGDAAA P++G +K+FR      I+ 
Sbjct: 404 DMLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHIEH 446


>gi|113867075|ref|YP_725564.1| NADH dehydrogenase chain F [Ralstonia eutropha H16]
 gi|113525851|emb|CAJ92196.1| NADH dehydrogenase chain F [Ralstonia eutropha H16]
          Length = 431

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/412 (51%), Positives = 279/412 (67%), Gaps = 8/412 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL GK+  L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLDGKNWHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N DE EPGT KDRDI+R+ PH+LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRTFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHSLIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E   E +  + A++E  A+G LG N    G+D  +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWNEYKIFEEALEEARAAGFLGDNILGSGFDFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSISG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAVGPENYLKLGKPNNGGTKIFSISG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+RGG   + AVIPGGSS P +P   M  + MDYD
Sbjct: 253 DVERPGNYEIPLGTPFAKLLEL-AGGMRGG-KRIKAVIPGGSSAPVVPGDLMMASDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ R++ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRMVNRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  ++ 
Sbjct: 371 HGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHVEH 422


>gi|285017797|ref|YP_003375508.1| NADH-quinone oxidoreductase chain f (nadh dehydrogenaseI chain f)
           (ndh-1, chain f) (nuo6) oxidoreductase [Xanthomonas
           albilineans GPE PC73]
 gi|283473015|emb|CBA15520.1| probable nadh-quinone oxidoreductase chain f (nadh dehydrogenaseI
           chain f) (ndh-1, chain f) (nuo6). oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 447

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/417 (50%), Positives = 273/417 (65%), Gaps = 8/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KIL++    + +I  VK S LRGRGGAGF TG+K
Sbjct: 22  VYTTLHYDTPWSYESYLKTGGYAALRKILDEKIPPEQVIEMVKQSNLRGRGGAGFPTGLK 81

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 82  WSFMPKNAPQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 139

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E  + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 140 RGEFHHEPFEHFEQALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 199

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G  W+ G  +  N G K+FS
Sbjct: 200 GKKGQPRYKPPFPANFGLYGKPSTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPKIFS 259

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG++ G   L   IPGG S+P L A +++G  M
Sbjct: 260 VSGCVQKGGNFEVPLGTTFDELLEM-AGGLKPG-RTLKGAIPGGVSMPVLKAEELKGLQM 317

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +G+GLG+ A++V+D S   +K   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 318 DYDTLRALGTGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHRVLE 377

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I   H
Sbjct: 378 RIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 434


>gi|311104663|ref|YP_003977516.1| NADH oxidoreductase (quinone) subunit F [Achromobacter xylosoxidans
           A8]
 gi|310759352|gb|ADP14801.1| NADH oxidoreductase (quinone), F subunit [Achromobacter
           xylosoxidans A8]
          Length = 455

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/418 (52%), Positives = 277/418 (66%), Gaps = 9/418 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFST 62
           Q +I  ++ G   + L+D + RG ++ + KIL  G   + +I EVKASGLRGRGGAGF T
Sbjct: 34  QPQIMADVDGANWR-LADYVKRGGYEALKKILTTGMKPEDVIAEVKASGLRGRGGAGFPT 92

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+    +  YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    +
Sbjct: 93  GLKWSFMPRAFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGY 151

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLE 180
            Y+ GE     E  + A++E  A+G LG +  LG D    +H  HG GAYICGEETALLE
Sbjct: 152 NYIHGEIFEVYERFEEALEEARAAGFLG-DKILGSDYSFQLHAFHGYGAYICGEETALLE 210

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R     Y   G+ NN GTK
Sbjct: 211 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTK 270

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSI+G V  P   E  +   F  L+E   GG+RGG   L AVIPGGSS P LPA  +  
Sbjct: 271 LFSITGDVERPGNYEIPLGTPFSTLLEL-AGGMRGG-KKLKAVIPGGSSAPVLPADVIME 328

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R
Sbjct: 329 CTMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYR 388

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++ R+  G  +  ++DLL  V+ NI GRTICALGDAAA P++G +K+FR      I+ 
Sbjct: 389 MVHRIENGHGRPEDLDLLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHIEH 446


>gi|313669280|ref|YP_004049564.1| NADH dehydrogenase I chain F [Neisseria lactamica ST-640]
 gi|313006742|emb|CBN88212.1| NADH dehydrogenase I chain F [Neisseria lactamica 020-06]
          Length = 431

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/395 (51%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           ++A+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 ESALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|325129044|gb|EGC51894.1| NADH:quinone oxidoreductase, F subunit [Neisseria meningitidis
           N1568]
          Length = 431

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 264/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL     +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMVGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|284034164|ref|YP_003384095.1| NADH-quinone oxidoreductase subunit F [Kribbella flavida DSM 17836]
 gi|283813457|gb|ADB35296.1| NADH-quinone oxidoreductase, F subunit [Kribbella flavida DSM
           17836]
          Length = 433

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/368 (54%), Positives = 263/368 (71%), Gaps = 5/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  VK SGLRGRGGAGF TGMKWSF+P+  + +P YLVVNADESEPGTCKD  +M   P
Sbjct: 41  VVTAVKDSGLRGRGGAGFPTGMKWSFIPQD-NPKPKYLVVNADESEPGTCKDIPLMLASP 99

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           HTL+EG +IAS+AI A  AFIYVRGE +     LQ AV+E  A+GL+G++    GYD+D+
Sbjct: 100 HTLVEGVIIASYAIRASTAFIYVRGEVLHVIRRLQQAVEEAKAAGLIGTDILGSGYDLDV 159

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLYGCPT +NNVESIA VP I+
Sbjct: 160 IVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVESIASVPAII 219

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           + GA W+   G E ++G  L+S+SGHV  P   E  + IT  +L++   GG+R G   L 
Sbjct: 220 KNGADWFGSMGTEKSKGMTLYSLSGHVTRPGQYEAPLGITLRQLLDL-AGGVREG-HELK 277

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
              PGGSS P L A  +    +DY+G+  +GS LGT A+ + D +T +++A+ R + FYK
Sbjct: 278 FWTPGGSSTPLLTAEHLD-VPLDYEGVGSVGSMLGTKALQIFDDTTCVVRAVLRWTEFYK 336

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
           HESCG+CTPCREGT W+++++ERL  G   +++++ L ++  NI GR+ CALGD A  PI
Sbjct: 337 HESCGKCTPCREGTWWLVQILERLEAGKGTEQDLETLLDLCDNILGRSFCALGDGATSPI 396

Query: 402 QGLIKNFR 409
              I+ F+
Sbjct: 397 TSSIQYFK 404


>gi|325203363|gb|ADY98816.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M01-240355]
          Length = 433

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/395 (52%), Positives = 264/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLGEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG D +  +  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFKLFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|74317165|ref|YP_314905.1| NADH-quinone oxidoreductase subunit F [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056660|gb|AAZ97100.1| NADH-quinone oxidoreductase, chain F [Thiobacillus denitrificans
           ATCC 25259]
          Length = 426

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/408 (50%), Positives = 269/408 (65%), Gaps = 9/408 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           SL+  ++ G +  + +++ +    D II E+K S LRGRGGAGF TG+KWSFMP+     
Sbjct: 22  SLATYVANGGYQALRRVVTEAVPGDDIIAEIKTSALRGRGGAGFPTGLKWSFMPRAFPGD 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N+DE EPGT KDRDI+R+ PH LIEG  IA + +GA   + Y+ GE     +  
Sbjct: 82  -KYIVCNSDEGEPGTFKDRDILRYNPHQLIEGMAIAGYVLGARVGYNYIHGEIFEVYQIF 140

Query: 137 QAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           + A++E   +G LG+N   G D   D+  HHG GAYICGEETALLES+EGKKGQPR KPP
Sbjct: 141 ERALEEARQAGYLGAN-LFGTDFCFDLHAHHGYGAYICGEETALLESIEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E++A VP I++ G   +   G+ NN G KLFS+SGHVN P   
Sbjct: 200 FPASFGLYGKPTTINNTETLASVPWIVQHGGQAFLELGKPNNGGAKLFSVSGHVNRPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F EL+E   GG+R G  +L AVIPGGSS P LP   M    MD+D + + GS 
Sbjct: 260 EVPLGTPFTELLEM-AGGVRDG-RSLKAVIPGGSSAPVLPGHIMMETTMDFDSIAKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVIVMD +  +++A+ RLS FY  ESCGQCTPCREGTGWM RV+ R+  G  +  +
Sbjct: 318 LGSGAVIVMDETVCMVRALERLSYFYYEESCGQCTPCREGTGWMYRVIHRIENGQGRPED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +DLL  V+  I G TICALGDAAA P+Q  +K+F    E  I ++ RC
Sbjct: 378 MDLLNSVAGQIGGHTICALGDAAAMPVQSFLKHFGHEFEHHI-EHKRC 424


>gi|261856545|ref|YP_003263828.1| NADH-quinone oxidoreductase, F subunit [Halothiobacillus
           neapolitanus c2]
 gi|261837014|gb|ACX96781.1| NADH-quinone oxidoreductase, F subunit [Halothiobacillus
           neapolitanus c2]
          Length = 429

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/406 (51%), Positives = 267/406 (65%), Gaps = 7/406 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L   +  G +    KIL +  D   II E+K S LRGRGGAGF TG+KWSFMP+    +
Sbjct: 17  TLESYLKTGGYSAWRKILAEKTDPALIIEELKTSNLRGRGGAGFPTGLKWSFMPRNAPGQ 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR-ERES 135
             Y+V N+DESEPGT KDR I+ + PH L+EG  IA + IGA   + Y+RGEF       
Sbjct: 77  -KYVVCNSDESEPGTAKDRQILLNNPHALVEGMAIAGYTIGATVGYNYMRGEFTDLVFRR 135

Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            + AV E Y  GLLG N +  G D D+    GAGAYICGEETALLESLEGKKGQPR KPP
Sbjct: 136 FETAVKEAYELGLLGKNLQGSGIDFDLYGSLGAGAYICGEETALLESLEGKKGQPRFKPP 195

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPAN GLYG PTTVNN E+++ VP I+R G  W++  G  N+ G KLFS+SGHVN P   
Sbjct: 196 FPANFGLYGRPTTVNNTETLSSVPAIMRNGGQWFADLGVPNSGGLKLFSVSGHVNKPGVF 255

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M + F EL+    GG+R G   L AVIPGG+S P +P   M    MDYD + + G+ 
Sbjct: 256 EIPMGLPFSELL-SMAGGVREG-RKLKAVIPGGTSTPVVPGSVMMQTNMDYDSIAKSGTF 313

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+  +IV+D S  +++A+ R+S FY  ESCGQCTPCREGTGW+ R++ R+V+G     +
Sbjct: 314 LGSGGLIVIDDSACMVEALRRISRFYYSESCGQCTPCREGTGWLYRMLTRVVEGKGAMAD 373

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ L +V+  IEGRTICALGDAAA P++  +K+FR   E  I+  H
Sbjct: 374 LNRLDDVASKIEGRTICALGDAAAVPVRSFLKHFRHEFEYYIEHGH 419


>gi|89257085|ref|YP_514447.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315442|ref|YP_764165.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167009477|ref|ZP_02274408.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656768|ref|YP_001429364.2| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254368321|ref|ZP_04984339.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|290952994|ref|ZP_06557615.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313814|ref|ZP_06804387.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144916|emb|CAJ80264.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130341|gb|ABI83528.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254129|gb|EBA53223.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|164551836|gb|ABU62408.2| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 424

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/404 (51%), Positives = 264/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G + L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVNMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T +++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407


>gi|187923345|ref|YP_001894987.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phytofirmans
           PsJN]
 gi|187714539|gb|ACD15763.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phytofirmans
           PsJN]
          Length = 442

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS++G
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSVAG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RG    + AVIPGGSS P +P   M    MDYD
Sbjct: 253 DVERPGNYEIPLGTPFSTLMEL-AGGMRG-VKKIKAVIPGGSSAPVIPGDIMMQTDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G+ +  ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 371 HGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|325135049|gb|EGC57677.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M13399]
 gi|325145239|gb|EGC67518.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M01-240013]
 gi|325145310|gb|EGC67588.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M01-240013]
 gi|325205331|gb|ADZ00784.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M04-240196]
          Length = 433

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 264/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL     +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|149927546|ref|ZP_01915800.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Limnobacter
           sp. MED105]
 gi|149823819|gb|EDM83045.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Limnobacter
           sp. MED105]
          Length = 420

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/412 (49%), Positives = 273/412 (66%), Gaps = 12/412 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L    +RG +  + KIL +G  ++ +I EVK S LRGRGGAGF TG+KWS
Sbjct: 3   LAGLDGSNWDLKGYEARGGYKALRKILTEGISQEDVIAEVKKSALRGRGGAGFPTGLKWS 62

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YL  N+DE EPGT KDRDI+R+ PH++IEG  IA++A+G    + Y+ G
Sbjct: 63  FMPRQFPGQ-KYLACNSDEGEPGTFKDRDILRYNPHSVIEGMAIAAYAMGISVGYNYIHG 121

Query: 128 EFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           E     E  + A+++  A+G LG N   SK  + +    H G GAYICGEETAL+ES+EG
Sbjct: 122 EIWETYERFEEALEQARAAGYLGDNIMGSKFSFQLH--AHQGYGAYICGEETALIESIEG 179

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP I++ G  W+   G+ NN GTK+FSI
Sbjct: 180 KKGQPRFKPPFPASYGIYGKPTTINNTETFAAVPFIIQNGGDWFLELGKPNNGGTKIFSI 239

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   GG++GG   + AVIPGGSS+P LP   M    MD
Sbjct: 240 SGDVEKPGNYEIPLGTPFATLLEM-AGGMKGG-RKIKAVIPGGSSMPVLPGDVMMATDMD 297

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 298 YDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWLYRIINR 357

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +  G  +  ++D+L  ++ NI+GRTICALGDAAA P++  +K+F    E  I
Sbjct: 358 IEHGEGRPEDLDMLNSIADNIQGRTICALGDAAAMPVRAFLKHFHEEFEHHI 409


>gi|165918808|ref|ZP_02218894.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA
           334]
 gi|165917532|gb|EDR36136.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA
           334]
          Length = 422

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/403 (50%), Positives = 270/403 (66%), Gaps = 6/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L    S G +  + KIL++    + IINE+K S LRGRGGAGF TG+KWSF+P+  +  
Sbjct: 18  TLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKWSFIPRDKTGE 77

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ N+DESEPGT KDRDI+R  PH ++EG  IA + +GA   + ++RGEF       
Sbjct: 78  -KYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLRGEFWEPFNRC 136

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +   +GL+G N    G D++I  H  AGAYICGEETAL+ SLEGK+G PR KPPF
Sbjct: 137 EQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGKRGWPRFKPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PAN GLY  P+ +NN E+ A VP IL +G  W++  G   N GTK+FS+SGHV  P   E
Sbjct: 197 PANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVSGHVAKPGNYE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + I F +L+    GG+R G   L AVIPGGSS+P LPA  M  AIM +DGL E GS L
Sbjct: 257 VPLGIPFADLL-ALAGGMREG-SELKAVIPGGSSMPVLPAEVMMKAIMSFDGLVEAGSML 314

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+ KG   KR+I
Sbjct: 315 GSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRIEKGEGTKRDI 374

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + L  V+K IEGRTICA G+AAAWP+ G++K+F    E  +  
Sbjct: 375 EQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTH 417


>gi|261364352|ref|ZP_05977235.1| NADH oxidoreductase, F subunit [Neisseria mucosa ATCC 25996]
 gi|288567616|gb|EFC89176.1| NADH oxidoreductase, F subunit [Neisseria mucosa ATCC 25996]
          Length = 433

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/395 (51%), Positives = 264/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + +IL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRRILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           + A+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EVALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIVRDGGQTFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEIL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIIHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|254805712|ref|YP_003083933.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha14]
 gi|254669254|emb|CBA08142.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha14]
          Length = 433

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 264/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL     +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMVGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|167836054|ref|ZP_02462937.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis MSMB43]
          Length = 436

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 276/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLTGENWRLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGK 185
           E        +AA+DE   +G LG +  +G D    +H  HG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARRAGFLG-DKIMGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEIPLGTPFATLMEL-AGGVRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|115352333|ref|YP_774172.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           AMMD]
 gi|115282321|gb|ABI87838.1| NADH dehydrogenase subunit F [Burkholderia ambifaria AMMD]
          Length = 436

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/415 (50%), Positives = 276/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE  A+G LG N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RG    + AVIPGGSS P +P   M    +DY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGA-RKIKAVIPGGSSAPVIPGDIMMQTDLDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|83720620|ref|YP_441619.1| NADH-quinone oxidoreductase subunit F [Burkholderia thailandensis
           E264]
 gi|167580427|ref|ZP_02373301.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis TXDOH]
 gi|167618536|ref|ZP_02387167.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis Bt4]
 gi|257139685|ref|ZP_05587947.1| NADH-quinone oxidoreductase, F subunit [Burkholderia thailandensis
           E264]
 gi|83654445|gb|ABC38508.1| NADH-quinone oxidoreductase, F subunit [Burkholderia thailandensis
           E264]
          Length = 436

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 276/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE   +G LG    +G D   ++  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARRAGFLGEKI-MGSDFSFELHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|126439968|ref|YP_001058343.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           668]
 gi|167918265|ref|ZP_02505356.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei BCC215]
 gi|126219461|gb|ABN82967.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           668]
          Length = 436

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 276/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE   +G LG    +G D    +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARRAGFLGEKI-MGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +  +F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEIPLGTSFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|218767064|ref|YP_002341576.1| NADH dehydrogenase I chain F [Neisseria meningitidis Z2491]
 gi|121051072|emb|CAM07342.1| NADH dehydrogenase I chain F [Neisseria meningitidis Z2491]
 gi|319411271|emb|CBY91678.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F;
           NDH-1, chain F) [Neisseria meningitidis WUE 2594]
          Length = 433

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/395 (51%), Positives = 264/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL     +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  +   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|167562182|ref|ZP_02355098.1| NADH-quinone oxidoreductase, F subunit [Burkholderia oklahomensis
           EO147]
          Length = 436

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/414 (50%), Positives = 275/414 (66%), Gaps = 8/414 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLTGENWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E        +AA++E   +G LG +    G+   +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIFEVYRRFEAALEEARRAGFLGDDIMGSGFSFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+SG
Sbjct: 193 GQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    +DYD
Sbjct: 253 DVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDLDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 371 HGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|237811587|ref|YP_002896038.1| NADH oxidoreductase (quinone), f subunit [Burkholderia pseudomallei
           MSHR346]
 gi|237505537|gb|ACQ97855.1| NADH oxidoreductase (quinone), f subunit [Burkholderia pseudomallei
           MSHR346]
          Length = 436

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/415 (50%), Positives = 275/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + YV G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYVHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE   +G LG    +G D    +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARRAGFLGEKI-MGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|254373577|ref|ZP_04989063.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151571301|gb|EDN36955.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
          Length = 424

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/404 (51%), Positives = 263/404 (65%), Gaps = 6/404 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+    +  Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G + L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NKLKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +  +++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETACMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFR 407


>gi|183981493|ref|YP_001849784.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone
           oxidoreductase chain F) [Mycobacterium marinum M]
 gi|183174819|gb|ACC39929.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone
           oxidoreductase chain F) [Mycobacterium marinum M]
          Length = 448

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/391 (52%), Positives = 269/391 (68%), Gaps = 7/391 (1%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESE 88
           ++K L  G D +I  VK SGLRGRGGAGFSTG KWSF+P+     + +PHYLVVNADESE
Sbjct: 36  LEKALAMGPDAVIGTVKDSGLRGRGGAGFSTGTKWSFIPQGDAGPAAKPHYLVVNADESE 95

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  +M   PH L+EG +IA++AI A  AFIYVRGE +     LQ AV E YA+GL
Sbjct: 96  PGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVRGEVLPVLRRLQNAVAEAYAAGL 155

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N +  G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLYGCPT 
Sbjct: 156 LGRNINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTV 215

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  EL++
Sbjct: 216 INNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD 275

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
            + GGIR G   L    PGGSS P L    +    +DY+G+  +GS LGT A+ + D +T
Sbjct: 276 -YAGGIRAG-HQLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGGVGSMLGTKALEIFDETT 332

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FYKHESCG+CTPCREGT W+ ++  RL  G   + +ID L ++S +I G
Sbjct: 333 CVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYARLETGKGTREDIDKLLDISDSILG 392

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++ CALGD AA P+   IK+F+      ++Q
Sbjct: 393 KSFCALGDGAASPVMSSIKHFQDEYIAHVEQ 423


>gi|332528756|ref|ZP_08404733.1| NADH-quinone oxidoreductase subunit F [Hylemonella gracilis ATCC
           19624]
 gi|332041822|gb|EGI78171.1| NADH-quinone oxidoreductase subunit F [Hylemonella gracilis ATCC
           19624]
          Length = 447

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/410 (52%), Positives = 276/410 (67%), Gaps = 8/410 (1%)

Query: 14  GLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           GL G +  L D  SRG ++ + KIL++G  +D +I  VK SGLRGRGGAGF TG+KWSFM
Sbjct: 31  GLNGANWRLKDYESRGGYEALKKILKEGLTQDQVIATVKESGLRGRGGAGFPTGLKWSFM 90

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
           P+    +  YLV N+DE EPGTCKDRDI+ + PH +IEG  IA++A+G    + Y+ GE 
Sbjct: 91  PRQFPGQ-KYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMAIAAYAMGITVGYNYIHGEI 149

Query: 130 IRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
               E  +AA++E  A+G LG      G+   +  HHG GAYICGEETALLESLEGKKGQ
Sbjct: 150 FEVYERFEAALEEARAAGYLGDKILGSGFSFQLHAHHGFGAYICGEETALLESLEGKKGQ 209

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS+SG V
Sbjct: 210 PRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEIGKPNNGGTKIFSVSGDV 269

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E  +   F +L+E   G   G    L AVIPGGSS P LPA  M    MDYD +
Sbjct: 270 ERPGNYEIPLGTPFSKLLELAGGVKGG--KKLKAVIPGGSSAPVLPAHIMMECTMDYDSI 327

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            + GS LG+ AVIVMD + D+++++ RLS FY HESCGQCTPCREGTGW+ R+++R+ +G
Sbjct: 328 SKAGSMLGSGAVIVMDETRDMVESLKRLSYFYMHESCGQCTPCREGTGWLWRLVDRIERG 387

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +  ++  L  V+ NI GRTICALGDAAA P++ +IK+FRP  E  I +
Sbjct: 388 EGRPEDMATLDSVAGNIMGRTICALGDAAAMPVRAMIKHFRPEFEALIPK 437


>gi|254674109|emb|CBA09893.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria
           meningitidis alpha275]
          Length = 433

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/395 (51%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIVRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  +    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEIL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIIMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  +   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|118617951|ref|YP_906283.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone
           oxidoreductase chain F) [Mycobacterium ulcerans Agy99]
 gi|118570061|gb|ABL04812.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone
           oxidoreductase chain F) [Mycobacterium ulcerans Agy99]
          Length = 448

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/382 (53%), Positives = 266/382 (69%), Gaps = 7/382 (1%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESE 88
           ++K L  G D +I  VK SGLRGRGGAGFSTG KWSF+P+     + +PHYLVVNADESE
Sbjct: 36  LEKALAMGPDAVIGTVKDSGLRGRGGAGFSTGTKWSFIPQGDAGPAAKPHYLVVNADESE 95

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  +M   PH L+EG +IA++AI A  AFIYVRGE +     LQ AV E YA+GL
Sbjct: 96  PGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVRGEVLPVLRRLQNAVAEAYAAGL 155

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N +  G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLYGCPT 
Sbjct: 156 LGRNINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTV 215

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  EL++
Sbjct: 216 INNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD 275

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
            + GGIR G   L    PGGSS P L    +    +DY+G+  +GS LGT A+ + D +T
Sbjct: 276 -YAGGIRAG-HQLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGGVGSMLGTKALEIFDETT 332

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FYKHESCG+CTPCREGT W+ ++  RL  G   + +ID L ++S +I G
Sbjct: 333 CVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYARLETGKGTREDIDKLLDISDSILG 392

Query: 388 RTICALGDAAAWPIQGLIKNFR 409
           ++ CALGD AA P+   IK+F+
Sbjct: 393 KSFCALGDGAASPVMSSIKHFQ 414


>gi|53718852|ref|YP_107838.1| NADH dehydrogenase I chain F [Burkholderia pseudomallei K96243]
 gi|76811124|ref|YP_332849.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1710b]
 gi|126454273|ref|YP_001065582.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1106a]
 gi|167737857|ref|ZP_02410631.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 14]
 gi|167815041|ref|ZP_02446721.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 91]
 gi|167823457|ref|ZP_02454928.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 9]
 gi|167845009|ref|ZP_02470517.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei B7210]
 gi|167893550|ref|ZP_02480952.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 7894]
 gi|167901996|ref|ZP_02489201.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei NCTC
           13177]
 gi|167910232|ref|ZP_02497323.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 112]
 gi|217419390|ref|ZP_03450896.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           576]
 gi|226195331|ref|ZP_03790920.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|242317334|ref|ZP_04816350.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1106b]
 gi|254181182|ref|ZP_04887779.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1655]
 gi|254190545|ref|ZP_04897052.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195194|ref|ZP_04901623.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           S13]
 gi|254260557|ref|ZP_04951611.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1710a]
 gi|52209266|emb|CAH35211.1| NADH dehydrogenase I chain F [Burkholderia pseudomallei K96243]
 gi|76580577|gb|ABA50052.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1710b]
 gi|126227915|gb|ABN91455.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1106a]
 gi|157938220|gb|EDO93890.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169651942|gb|EDS84635.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           S13]
 gi|184211720|gb|EDU08763.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1655]
 gi|217396694|gb|EEC36710.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           576]
 gi|225932533|gb|EEH28531.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|242140573|gb|EES26975.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1106b]
 gi|254219246|gb|EET08630.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1710a]
          Length = 436

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 275/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE   +G LG    +G D    +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARRAGFLGEKI-MGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|121634118|ref|YP_974363.1| NADH dehydrogenase I chain F [Neisseria meningitidis FAM18]
 gi|120865824|emb|CAM09556.1| NADH dehydrogenase I chain F [Neisseria meningitidis FAM18]
 gi|325137073|gb|EGC59669.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M0579]
 gi|325139137|gb|EGC61683.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           ES14902]
 gi|325143087|gb|EGC65434.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           961-5945]
 gi|325143157|gb|EGC65503.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           961-5945]
 gi|325197532|gb|ADY92988.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           G2136]
 gi|325202925|gb|ADY98379.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M01-240149]
 gi|325207277|gb|ADZ02729.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 433

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/395 (51%), Positives = 264/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + V  I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|304389071|ref|ZP_07371115.1| NADH-quinone oxidoreductase subunit F [Neisseria meningitidis ATCC
           13091]
 gi|304336944|gb|EFM03134.1| NADH-quinone oxidoreductase subunit F [Neisseria meningitidis ATCC
           13091]
          Length = 433

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/395 (52%), Positives = 263/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG D +  +  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFKLFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + V  I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|30249732|ref|NP_841802.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Nitrosomonas
           europaea ATCC 19718]
 gi|30180769|emb|CAD85683.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 425

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/393 (53%), Positives = 269/393 (68%), Gaps = 6/393 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L + + R  +  + KIL +    + +I+EVK S LRGRGGAGF TG+KWSFMPK  +   
Sbjct: 22  LKNYLKRDGYAALKKILSQKISPEAVIDEVKKSALRGRGGAGFPTGLKWSFMPKQYTGE- 80

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV N+DE EPGT KDRDIMR+ PH LIEG +IA++A+G    + YV GE     E ++
Sbjct: 81  KYLVCNSDEGEPGTFKDRDIMRYNPHILIEGMLIAAYAMGIRTGYNYVHGEIWDVYERME 140

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            AV+E   +G LG N    G+   +  HHG GAYICGEETALLES+EGKKGQPR KPPFP
Sbjct: 141 EAVEEANVAGFLGDNILGSGFSFRLYNHHGYGAYICGEETALLESIEGKKGQPRFKPPFP 200

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           AN GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS+SGHVN P   E 
Sbjct: 201 ANFGLYGKPTTINNTETFASVPWIIRNGGERYLQLGKPNNGGTKIFSVSGHVNKPGNYEV 260

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M   F +L+E   GG+RGG   L   IPGGSS+P LP   M    MDYD + + GS LG
Sbjct: 261 PMGTPFAKLLEL-AGGMRGG-RKLKGCIPGGSSMPVLPGDIMMETDMDYDSIAKAGSMLG 318

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           + AVI+MD +T +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  ++D
Sbjct: 319 SGAVIIMDDTTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIINRIEHGKGRVEDLD 378

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           LL  ++ NI+GRTICALGDAAA P++ ++++FR
Sbjct: 379 LLDNLADNIQGRTICALGDAAAMPVRAMLQHFR 411


>gi|319943353|ref|ZP_08017635.1| NADH-quinone oxidoreductase subunit F [Lautropia mirabilis ATCC
           51599]
 gi|319743168|gb|EFV95573.1| NADH-quinone oxidoreductase subunit F [Lautropia mirabilis ATCC
           51599]
          Length = 449

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/412 (50%), Positives = 272/412 (66%), Gaps = 13/412 (3%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGR-----DWIINEVKASGLRGRGGAG 59
           +IF  L    G +L    +RG +  + ++L    G+     + +I EVKASGLRGRGGAG
Sbjct: 24  QIFAGLTSADGWTLEQYEARGGYQALKRVLLGADGKQPMTPEEVIAEVKASGLRGRGGAG 83

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWSFMP+    +  YLV N+DE EPGT KDRDI+R+ PH +IEG  IA++A+G  
Sbjct: 84  FPTGLKWSFMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRYNPHIVIEGMTIAAYAMGIS 142

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177
             + Y+ GE  R  E  + A+ +  A+G LG +  LG D   ++  HHG GAYICGEETA
Sbjct: 143 AGYNYIHGEIFRIYERFEEALAQARAAGYLG-DRILGTDFSFNLNAHHGFGAYICGEETA 201

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ + VP I+R G   +   G+ NN 
Sbjct: 202 LLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFSAVPWIIRNGGQAFLEAGKPNNG 261

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G V  P   E  +   F +L+E   GG+R G   L  VIPGGSS P +P   
Sbjct: 262 GTKIFSVGGDVERPGNYEVPLGTPFAKLLEL-AGGVRYG-RKLKMVIPGGSSAPVIPGHM 319

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    MDYD + + GS LG+ AVIVMD +   ++++ RLS FY HESCGQCTPCREGTGW
Sbjct: 320 MMDLTMDYDAIAKAGSMLGSGAVIVMDETRCPVRSLERLSYFYSHESCGQCTPCREGTGW 379

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + R++ R+  G  +  +ID L  V+ NI+GRTICALGDAAA P++G IK++R
Sbjct: 380 LYRLVHRIEHGQGRPEDIDELDRVAGNIQGRTICALGDAAAMPVRGFIKHYR 431


>gi|300691030|ref|YP_003752025.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           PSI07]
 gi|299078090|emb|CBJ50733.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           PSI07]
          Length = 431

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/402 (52%), Positives = 275/402 (68%), Gaps = 8/402 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D + RG +  + +IL +    + II +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R+ PH LIEG  I  +A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRYNPHALIEGMAIGGYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     +  + A++E  A+GLLG N    G++  +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWDVYKRFEEALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+FS+SG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKIFSVSG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+RGG   + AVIPGGSS P +P   M    MDYD
Sbjct: 253 DVERPGNYEIPLGTPFSKLLEL-AGGMRGG-KKIKAVIPGGSSAPVVPGDVMMQTDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G+ + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV++R+ 
Sbjct: 311 GIAKTGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRVVDRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++
Sbjct: 371 HGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHY 412


>gi|53725814|ref|YP_103429.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 23344]
 gi|67642187|ref|ZP_00440947.1| NADH oxidoreductase (quinone), f subunit [Burkholderia mallei GB8
           horse 4]
 gi|121600821|ref|YP_992474.1| NADH dehydrogenase I, F subunit [Burkholderia mallei SAVP1]
 gi|124384341|ref|YP_001026723.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10229]
 gi|126448595|ref|YP_001079992.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10247]
 gi|167000363|ref|ZP_02266181.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei PRL-20]
 gi|254175777|ref|ZP_04882437.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 10399]
 gi|254202105|ref|ZP_04908468.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei FMH]
 gi|254207435|ref|ZP_04913785.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei JHU]
 gi|254359857|ref|ZP_04976127.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei
           2002721280]
 gi|52429237|gb|AAU49830.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 23344]
 gi|121229631|gb|ABM52149.1| NADH dehydrogenase I, F subunit [Burkholderia mallei SAVP1]
 gi|124292361|gb|ABN01630.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10229]
 gi|126241465|gb|ABO04558.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10247]
 gi|147746352|gb|EDK53429.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei FMH]
 gi|147751329|gb|EDK58396.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei JHU]
 gi|148029097|gb|EDK87002.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei
           2002721280]
 gi|160696821|gb|EDP86791.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 10399]
 gi|238523283|gb|EEP86722.1| NADH oxidoreductase (quinone), f subunit [Burkholderia mallei GB8
           horse 4]
 gi|243063697|gb|EES45883.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei PRL-20]
          Length = 436

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/415 (50%), Positives = 274/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA+DE   +G LG    +G D    +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALDEARRAGFLGEKI-MGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAA  P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAVMPVRGMLKHYWDEFAYHVEHKH 424


>gi|194324420|ref|ZP_03058193.1| NADH-quinone oxidoreductase, f subunit [Francisella tularensis
           subsp. novicida FTE]
 gi|194321485|gb|EDX18970.1| NADH-quinone oxidoreductase, f subunit [Francisella tularensis
           subsp. novicida FTE]
          Length = 391

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/370 (53%), Positives = 249/370 (67%), Gaps = 4/370 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + II E+K SGLRGRGGAGF TG+KWSFMP+    +  Y+V N+DE EPGTCKDR+I+R+
Sbjct: 8   EQIIEELKISGLRGRGGAGFPTGLKWSFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRN 66

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDV 159
            PH LIEG  IA + +GA   + Y RGEF       + A+ E Y +GLLG+N K  G   
Sbjct: 67  NPHQLIEGMAIAGYVVGATAGYNYTRGEFYEPIARFEDALIEAYQAGLLGTNIKSSGISF 126

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D+    GAGAYICGEETALL SLEGKKG+PR KPPFPA  GLY  PT +NN E+ A VP 
Sbjct: 127 DLYSAIGAGAYICGEETALLNSLEGKKGRPRFKPPFPAFKGLYDKPTNINNTETYASVPA 186

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL+ G  W+   G E + GTKLF +SGHV     VE  + + F EL++  CGG+R G + 
Sbjct: 187 ILQYGGEWFKKLGTEKSGGTKLFCVSGHVQQQKVVEIGLGMPFKELLD-MCGGVRNG-NK 244

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L AVIPGGSS   L A +M    MDY+ +   GS LG+ AV+V+D +T +++ + RL+ F
Sbjct: 245 LKAVIPGGSSSKILTADEMMAVTMDYESIAAAGSMLGSGAVVVLDETTCMVRTLARLADF 304

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           Y  ESCGQCTPCREGTGW+ R + R+V G  +  +ID L  V+ NIEG TIC LGDAAAW
Sbjct: 305 YYEESCGQCTPCREGTGWLARTLHRIVAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAW 364

Query: 400 PIQGLIKNFR 409
           P+Q  I  FR
Sbjct: 365 PVQSYIDKFR 374


>gi|208780263|ref|ZP_03247605.1| NADH-quinone oxidoreductase, f subunit [Francisella novicida FTG]
 gi|208743912|gb|EDZ90214.1| NADH-quinone oxidoreductase, f subunit [Francisella novicida FTG]
 gi|332678972|gb|AEE88101.1| NADH-ubiquinone oxidoreductase chain F [Francisella cf. novicida
           Fx1]
          Length = 391

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/370 (53%), Positives = 249/370 (67%), Gaps = 4/370 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + II E+K SGLRGRGGAGF TG+KWSFMP+    +  Y+V N+DE EPGTCKDR+I+R+
Sbjct: 8   EQIIEELKISGLRGRGGAGFPTGLKWSFMPRNAPGQ-KYVVCNSDEGEPGTCKDREILRN 66

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDV 159
            PH LIEG  IA + +GA   + Y RGEF       + A+ E Y +GLLG+N K  G   
Sbjct: 67  NPHQLIEGMAIAGYVVGATAGYNYTRGEFYEPIARFEDALIEAYQAGLLGTNIKSSGISF 126

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D+    GAGAYICGEETALL SLEGKKG+PR KPPFPA  GLY  PT +NN E+ A VP 
Sbjct: 127 DLYSAIGAGAYICGEETALLNSLEGKKGRPRFKPPFPAFKGLYDKPTNINNTETYASVPA 186

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL+ G  W+   G E + GTKLF +SGHV     VE  + + F EL++  CGG+R G + 
Sbjct: 187 ILQYGGEWFKKLGTEKSGGTKLFCVSGHVQQQRVVEIGLGMPFKELLD-MCGGVRNG-NK 244

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L AVIPGGSS   L A +M    MDY+ +   GS LG+ AV+V+D +T +++ + RL+ F
Sbjct: 245 LKAVIPGGSSSKILTADEMMAVTMDYESIAAAGSMLGSGAVVVLDETTCMVRTLARLADF 304

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           Y  ESCGQCTPCREGTGW+ R + R+V G  +  +ID L  V+ NIEG TIC LGDAAAW
Sbjct: 305 YYEESCGQCTPCREGTGWLARTLHRIVAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAW 364

Query: 400 PIQGLIKNFR 409
           P+Q  I  FR
Sbjct: 365 PVQSYIDKFR 374


>gi|73540669|ref|YP_295189.1| NADH-quinone oxidoreductase, F subunit [Ralstonia eutropha JMP134]
 gi|72118082|gb|AAZ60345.1| NADH-quinone oxidoreductase, F subunit [Ralstonia eutropha JMP134]
          Length = 431

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/412 (51%), Positives = 277/412 (67%), Gaps = 8/412 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL GK+  L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLDGKNWHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRTFPGQ-KYLVCNTDEGEPGTFKDRDIIRFNPHSLIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E   E +  + A++E  A+G LG N    G+   +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWNEYKIFEEALEEARAAGFLGDNILGSGFSFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSISG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPENYLKMGKPNNGGTKIFSISG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+RGG   + AVIPGGSS P +P   M  + MDYD
Sbjct: 253 DVERPGNYEIPLGTPFAKLLEL-AGGMRGG-KRIKAVIPGGSSAPVVPGEMMMASDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ R++ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRMVNRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  ++ 
Sbjct: 371 HGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHVEH 422


>gi|308388466|gb|ADO30786.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha710]
          Length = 433

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/395 (51%), Positives = 263/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL     +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + V  I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|255019912|ref|ZP_05291987.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970692|gb|EET28179.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus
           ATCC 51756]
          Length = 428

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/419 (51%), Positives = 274/419 (65%), Gaps = 14/419 (3%)

Query: 8   IFTNLYGLQGKSLSDSM------SRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAG 59
           ++ N   L+ + + DS       S G +  + KI  +G   + +I E+K S LRGRGGAG
Sbjct: 1   MYVNGVTLKNRGIPDSHRLSVYESTGGYQALRKIFAEGITPEQVIAEMKTSALRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWSFMPK  S    YL+ NADE EPGTCKDRDIMR+EPH LIEG +I ++A+GA 
Sbjct: 61  FPTGLKWSFMPKGVSGT-KYLLCNADEGEPGTCKDRDIMRYEPHRLIEGMIIGAYAMGAR 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177
             +I++RGEFI     ++AA++E YA+G LG    LG  +  D+ VH GAGAYICGEETA
Sbjct: 120 AGYIFIRGEFIEPIRRVEAALEEAYAAGFLGERI-LGQEFSFDLYVHRGAGAYICGEETA 178

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+E+LEGKKGQPR KPPFPA+ GLYG PTT+NNVE+ A VP I+ RG  W+   G+ NN 
Sbjct: 179 LMEALEGKKGQPRFKPPFPASYGLYGRPTTINNVETFASVPDIIVRGGQWFLDLGKANNG 238

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G V  P   E  M   F EL++   GG+  G  +L AVIPGG+S   L    
Sbjct: 239 GTKIFSVTGQVQRPGNYEVPMGTPFPELLDM-AGGLHPG-RSLKAVIPGGTSTAMLAGAT 296

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    MDYD + + GS LG  +VIV+D S  I++ + R++ FY HESCGQCTPCREG GW
Sbjct: 297 MMECTMDYDSIAKAGSALGAGSVIVIDDSVCIVRVVERIARFYMHESCGQCTPCREGMGW 356

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + RVM R+  G  + ++IDLL  V   IEGRTICAL D    P+   IK FR   E  I
Sbjct: 357 LWRVMHRIENGQGRAQDIDLLLNVGARIEGRTICALADGGVAPVVSSIKLFRDEYEHHI 415


>gi|114330930|ref|YP_747152.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas eutropha C91]
 gi|114307944|gb|ABI59187.1| NADH dehydrogenase subunit F [Nitrosomonas eutropha C91]
          Length = 425

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/392 (53%), Positives = 266/392 (67%), Gaps = 6/392 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L   + R  +  + KIL +    + +I EVK S LRGRGGAGF TG+KWSFMPK  +   
Sbjct: 22  LKSYLKRDGYVALKKILSQKIPPEVVIEEVKKSALRGRGGAGFPTGLKWSFMPKQYTGE- 80

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV N+DE EPGT KDRDIMR+ PH LIEG +IA++A+G    + YV GE     E ++
Sbjct: 81  KYLVCNSDEGEPGTFKDRDIMRYNPHVLIEGMLIAAYAMGIRTGYNYVHGEIWDVYERME 140

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            AV+E  A+G LG N    G+   +  HHG GAYICGEETALLES+EGKKGQPR KPPFP
Sbjct: 141 EAVEEANAAGFLGENILDSGFVFQLYNHHGYGAYICGEETALLESIEGKKGQPRFKPPFP 200

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           AN GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS+SGHVN P   E 
Sbjct: 201 ANFGLYGKPTTINNTETFASVPWIMRNGGESYLQLGKPNNGGTKIFSVSGHVNKPGNYEV 260

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M   F +L+E   GG+RGG   L   IPGGSS+P LP   M    MDYD + + GS LG
Sbjct: 261 PMGTPFSKLLEL-AGGMRGG-RKLKGCIPGGSSMPVLPGSIMMETDMDYDSIAKAGSMLG 318

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           + AVI+MD +T +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  ++D
Sbjct: 319 SGAVIIMDDTTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIINRIEHGKGRIEDLD 378

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +L  ++ NI+GRTICALGDAAA P++ ++ +F
Sbjct: 379 VLNNLADNIQGRTICALGDAAAMPVRAMLHHF 410


>gi|134283882|ref|ZP_01770578.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           305]
 gi|167718848|ref|ZP_02402084.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei DM98]
 gi|254298538|ref|ZP_04965990.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           406e]
 gi|134244671|gb|EBA44769.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           305]
 gi|157808144|gb|EDO85314.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           406e]
          Length = 436

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/415 (50%), Positives = 274/415 (66%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLTGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGK 185
           E        +AA+ E   +G LG    +G D    +H  HG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALGEARRAGFLGEKI-MGSDFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEIPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|42524473|ref|NP_969853.1| NADH dehydrogenase I, F subunit [Bdellovibrio bacteriovorus HD100]
 gi|39576682|emb|CAE80846.1| NADH dehydrogenase I, F subunit [Bdellovibrio bacteriovorus HD100]
          Length = 430

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/409 (49%), Positives = 275/409 (67%), Gaps = 5/409 (1%)

Query: 7   RIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           ++ T  Y L + ++L+   ++G ++ + K  +     II+EVKASGLRGRGGAGF TGMK
Sbjct: 5   KMLTEFYHLPEYQTLAGYKAKGGYETLHKAFKMQPQAIIDEVKASGLRGRGGAGFPTGMK 64

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           W F+PK  +  P YL+ NADE EPGT KDR +M   PH LIEG +I++FAIG+H  +IYV
Sbjct: 65  WGFLPK--NGEPRYLLCNADEGEPGTFKDRMMMERAPHQLIEGMIISAFAIGSHKGYIYV 122

Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGE++   E L  A+ E YA+GLLG N    G+D D+ V+ GAGAYICGEET ++ SLEG
Sbjct: 123 RGEYVFPIECLNKAIKEAYAAGLLGKNILGSGFDFDLDVYRGAGAYICGEETGMISSLEG 182

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
            KGQP+LKPPFPA  G    PT VNNVE++A V  I++ GA  Y   G E + GTKLFS+
Sbjct: 183 LKGQPKLKPPFPAVQGYLRKPTIVNNVETLAAVTYIIKDGAQAYRKHGTEKSAGTKLFSL 242

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG+V  P   E  +     +LI K  GG++ G   L AVIPGGSS P L A ++  A +D
Sbjct: 243 SGNVMTPGNFEVPLGYPLMDLIMKEGGGMKPG-RKLKAVIPGGSSAPVLTAEEVAKANLD 301

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           Y+ L  +G+ LG+ AVIV+D S  ++  +  L+ FY HESCGQCTPCREGTGW+ +V+  
Sbjct: 302 YESLAGLGTMLGSGAVIVIDDSQCMVDMLGVLTHFYAHESCGQCTPCREGTGWLNKVLHS 361

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +++G  + ++IDLL +V+ N++G+TICAL DAAA P+   +  FR   E
Sbjct: 362 ILEGRGRLQDIDLLIKVADNMKGKTICALSDAAALPVLSFVTKFRDEFE 410


>gi|161870818|ref|YP_001599991.1| NADH dehydrogenase I chain F [Neisseria meningitidis 053442]
 gi|161596371|gb|ABX74031.1| NADH dehydrogenase I chain F [Neisseria meningitidis 053442]
          Length = 433

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/395 (51%), Positives = 262/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           + A+ +  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 ETALAQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G     +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGCMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  +   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|325131608|gb|EGC54315.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M6190]
          Length = 433

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/395 (51%), Positives = 263/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+++  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALEQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + V  I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCRE TGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCRESTGWLYRIVHRIVEGKGKMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|194366599|ref|YP_002029209.1| NADH-quinone oxidoreductase subunit F [Stenotrophomonas maltophilia
           R551-3]
 gi|194349403|gb|ACF52526.1| NADH-quinone oxidoreductase, F subunit [Stenotrophomonas
           maltophilia R551-3]
          Length = 446

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/417 (49%), Positives = 270/417 (64%), Gaps = 8/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+    + +I  VKASGLRGRGGAGF TG+K
Sbjct: 21  VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK   +   Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 81  WSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E  + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFEHFEQALADAYANGWLGKNVMGSGVDIDIYGALGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG P+T+NN E+   VP I+R G  W+ G     N G K FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPKCFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TF +L++   GG+R G   L   IPGG S+P L A +++   M
Sbjct: 259 VSGCVQNGGNFEVPLGTTFHDLLQM-AGGLRPG-RTLKGAIPGGVSMPVLTAAELKDLPM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD ++ +GSGLG+ A++V+D S   +K   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTIRALGSGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I   H
Sbjct: 377 RIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433


>gi|197124712|ref|YP_002136663.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp. K]
 gi|220919433|ref|YP_002494737.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|196174561|gb|ACG75534.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp. K]
 gi|219957287|gb|ACL67671.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 441

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/406 (49%), Positives = 272/406 (66%), Gaps = 7/406 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL+   + G +  +DK +      I++EVK S LRGRGGAGF+TG+KW+F+PK    RP 
Sbjct: 18  SLASYRADGGYGALDKAMGADPAAIVDEVKKSNLRGRGGAGFATGLKWTFLPKDV--RPR 75

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL VNADESEPGT KDR I+ H+PH LIEG  +  +A+  H A++Y+RGEF ++   L+ 
Sbjct: 76  YLTVNADESEPGTFKDRYIIEHDPHMLIEGIALTCYALDIHLAYVYIRGEFAKQARILEQ 135

Query: 139 AVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+ E   +G+LG     K  + +DI VH GAGAYICGEE+ALLESLEGKKG PRLKPPFP
Sbjct: 136 AIQEARDAGILGPRLLGKQDFPLDIHVHRGAGAYICGEESALLESLEGKKGYPRLKPPFP 195

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT +NNVE+IA VP I+  G + ++  G   + GT+LF +SGHVN P   E+
Sbjct: 196 AVVGLWGKPTIINNVETIANVPWIVANGGAAFAALGVGKSGGTRLFGVSGHVNRPGVYEK 255

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            +     +LI +  GGI GG   L AVIPGGSS P L A ++  + +++D +K  GS  G
Sbjct: 256 PVHYNLKKLIMEDAGGIVGG-RKLKAVIPGGSSAPVLAAHEIDIS-LEFDAVKAAGSMSG 313

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  VIV D S  +++A+ R++ FY  ESCGQCTPCREGT WM  ++E++  G A   +++
Sbjct: 314 SGGVIVFDESVCLVRALARIAKFYAEESCGQCTPCREGTSWMEGILEKIEHGHATAADVE 373

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            L +V+ NI G TICALGDAAA P+Q  +K F+P     ++  HRC
Sbjct: 374 KLEQVAGNIAGNTICALGDAAAMPVQSFLKKFKPEFLRHVEA-HRC 418


>gi|260223138|emb|CBA33401.1| NADH-quinone oxidoreductase subunit F [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 619

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/395 (54%), Positives = 270/395 (68%), Gaps = 14/395 (3%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGFSTGMK 65
           GL G   SL D ++RG +  + KIL K       +D +I  VK SGLRGRGGAGF TG+K
Sbjct: 125 GLNGSNWSLQDYVARGGYQALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFPTGLK 184

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    +  YLV N+DE EPGTCKDRDI++  PH +IEG  IA++A+G    + Y+
Sbjct: 185 WSFMPRQFPGQ-KYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGITVGYNYI 243

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLE 183
            GE     +  +AA++E  A+G LG N  LG +    +H  HG GAYICGEETALLESLE
Sbjct: 244 HGEIFASYDRFEAALEEARAAGFLGDNI-LGSNFSFQLHAAHGFGAYICGEETALLESLE 302

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK++S
Sbjct: 303 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTKIYS 362

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V  P   E  M   F +L+E   GG+RGG  NL AVIPGGSS P LPA  +    M
Sbjct: 363 VSGDVERPGNYEIPMGTPFSKLLEL-AGGVRGG-RNLKAVIPGGSSSPVLPASIIMECTM 420

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD + + GS LG+ AVIVMD +  ++KA+ RLS FY HESCGQCTPCREGTGW+ R+++
Sbjct: 421 DYDSIAKAGSMLGSGAVIVMDETRCMVKALQRLSYFYMHESCGQCTPCREGTGWLSRMVD 480

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           R+  G  +  ++DLL  V++NI+GRTICALGDAAA
Sbjct: 481 RIEGGQGRPSDMDLLDNVAENIQGRTICALGDAAA 515


>gi|215413017|ref|ZP_03421718.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis 94_M4241A]
 gi|298526624|ref|ZP_07014033.1| NADH-quinone oxidoreductase subunit F [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496418|gb|EFI31712.1| NADH-quinone oxidoreductase subunit F [Mycobacterium tuberculosis
           94_M4241A]
          Length = 445

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/418 (49%), Positives = 272/418 (65%), Gaps = 28/418 (6%)

Query: 16  QGKSLSDSMSRGHWDN--------------------VDKILEKGRDWIINEVKASGLRGR 55
           Q   L+  +SR HWD+                    + K L    D +I+ VK SGLRGR
Sbjct: 4   QATPLTPVISR-HWDDPKSWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGR 62

Query: 56  GGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           GGAGF+TG KWSF+P+     + +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA
Sbjct: 63  GGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIA 122

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYI 171
           ++AI AH AF+YVRGE +     L  AV E YA+G LG N    G+D++++VH GAGAYI
Sbjct: 123 AYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYI 182

Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
           CGEETALL+SLEG++GQPRL+PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   
Sbjct: 183 CGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSM 242

Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           G E + G  L+S+SGHV  P   E  + IT  EL++ + GG+R G   L    PGGSS P
Sbjct: 243 GSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSSTP 300

Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351
            L    +    +DY+G+   GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPC
Sbjct: 301 LLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPC 359

Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           REGT W+ ++ ERL  G     +ID L ++S +I G++ CALGD AA P+   IK+FR
Sbjct: 360 REGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFR 417


>gi|194289164|ref|YP_002005071.1| NADH:ubiquinone oxidoreductase complex i, chain f [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222999|emb|CAQ69004.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus
           taiwanensis LMG 19424]
          Length = 431

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/412 (50%), Positives = 276/412 (66%), Gaps = 8/412 (1%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLDGNNWHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N DE EPGT KDRDI+R+ PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRTFPGQ-KYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E   E +  + A++E  A+G LG N    G+   +  HHG GAYICGEETALLESLEGKK
Sbjct: 133 EIWNEYKIFEEALEEARAAGFLGDNILGSGFSFQLHAHHGYGAYICGEETALLESLEGKK 192

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSISG
Sbjct: 193 GQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAVGPENYLKMGKPNNGGTKIFSISG 252

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F +L+E   GG+RGG   + AVIPGGSS P +P   M  + MDYD
Sbjct: 253 DVERPGNYEIPLGTPFAKLLEL-AGGMRGG-KRIKAVIPGGSSAPVVPGDLMMASDMDYD 310

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ R++ R+ 
Sbjct: 311 SIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRMVNRIE 370

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  ++ 
Sbjct: 371 HGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHVEH 422


>gi|41409304|ref|NP_962140.1| hypothetical protein MAP3206 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398124|gb|AAS05754.1| NuoF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 453

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/411 (50%), Positives = 270/411 (65%), Gaps = 8/411 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSD 75
           +L      G +  + K L    D +I  VK SGLRGRGGAGFSTG KWSF+P+     + 
Sbjct: 34  TLQTYHRHGGYTAMKKALAMEPDAVIGMVKDSGLRGRGGAGFSTGTKWSFIPQGDTGAAA 93

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI A+ AFIYVRGE +     
Sbjct: 94  KPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRANHAFIYVRGEVLPVLRR 153

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQ AV E YA+G LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 154 LQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 213

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   
Sbjct: 214 FPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQY 273

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL++ + GG+R G   L    PGGSS P L   +     +DY+G+  +GS 
Sbjct: 274 EAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSSTPLL-TDEHLDVPLDYEGVGGVGSM 330

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G     +
Sbjct: 331 LGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGTAED 390

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ID L ++S  I G++ CALGD AA P+   IK FR      ++   RC F 
Sbjct: 391 IDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAHVEN-GRCPFD 440


>gi|86160615|ref|YP_467400.1| NADH-quinone oxidoreductase subunit F [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777126|gb|ABC83963.1| NADH dehydrogenase subunit F [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 441

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/406 (49%), Positives = 272/406 (66%), Gaps = 7/406 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL+   + G +  +DK +      I++EVK S LRGRGGAGF+TG+KW+F+PK    RP 
Sbjct: 18  SLASYRADGGYGALDKAMGADPAAIVDEVKKSNLRGRGGAGFATGLKWTFLPKDV--RPR 75

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL VNADESEPGT KDR I+ H+PH LIEG  +  +A+  H A++Y+RGEF ++   L+ 
Sbjct: 76  YLTVNADESEPGTFKDRYIIEHDPHMLIEGIALTCYALDIHLAYVYIRGEFAKQARILEQ 135

Query: 139 AVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+ E   +G+LG     K  + +DI VH GAGAYICGEE+ALLESLEGKKG PRLKPPFP
Sbjct: 136 AIQEARDAGILGPRLLGKKDFPLDIHVHRGAGAYICGEESALLESLEGKKGYPRLKPPFP 195

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT +NNVE+IA VP I+  G + ++  G   + GT+LF +SGHVN P   E+
Sbjct: 196 AVVGLWGKPTIINNVETIANVPWIVANGGAAFAALGVGKSGGTRLFGVSGHVNRPGVYEK 255

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            +     +LI +  GGI GG   L AVIPGGSS P L A ++  + +++D +K  GS  G
Sbjct: 256 PVHYNLKKLIMEDAGGIVGG-RKLKAVIPGGSSAPVLAAHEIDIS-LEFDAVKAAGSMSG 313

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  VIV D S  +++A+ R++ FY  ESCGQCTPCREGT WM  ++E++  G A   +++
Sbjct: 314 SGGVIVFDESVCLVRALARIAKFYAEESCGQCTPCREGTSWMEGILEKIEHGHATAADVE 373

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            L +V+ NI G TICALGDAAA P+Q  +K F+P     ++  HRC
Sbjct: 374 KLEQVAGNIAGNTICALGDAAAMPVQSFLKKFKPEFLRHVEA-HRC 418


>gi|121998539|ref|YP_001003326.1| NADH-quinone oxidoreductase subunit F [Halorhodospira halophila
           SL1]
 gi|121589944|gb|ABM62524.1| NADH dehydrogenase subunit F [Halorhodospira halophila SL1]
          Length = 426

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/380 (51%), Positives = 259/380 (68%), Gaps = 9/380 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRH 100
           +++EVK S LRGRGGAGF  G+KW FMP+   DR    YL+ N+DESEPGTCKD DI+R 
Sbjct: 43  VVDEVKQSALRGRGGAGFPPGIKWGFMPR---DRAGQKYLICNSDESEPGTCKDHDILRF 99

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYD 158
            PH ++EG +IA +A+GA   + Y+RGEF  E  E ++ AV E   +G LG +    G+D
Sbjct: 100 NPHAVVEGMIIAGYAMGATVGYNYLRGEFHHEPFERMEQAVAEARKAGYLGRDILGSGFD 159

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++  H+GAGAYICGEE+AL+ESLEGKKGQPR KPPFPA VG+YG PTT+NN E++A VP
Sbjct: 160 FELHNHYGAGAYICGEESALMESLEGKKGQPRYKPPFPAQVGIYGKPTTINNTETLASVP 219

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            ++R GA W+   G+ NN G K+FS+SGHV  P   E  M   F EL+E   GG+R G  
Sbjct: 220 AVIRNGAEWFLNLGKPNNGGEKIFSVSGHVACPGNYEIPMGTPFRELLEM-AGGVRAG-H 277

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
            L AVIPGGSS P +P   M    MDYD +   GS LG+ AV+V+D +TD+++ + R++ 
Sbjct: 278 RLKAVIPGGSSTPVVPGETMLETDMDYDSIAAAGSMLGSGAVVVIDETTDMVRILARITR 337

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           FY  ESCGQCTPCREGTGW+ R ++R+ +G     ++ +L EV   I G TICA G+AAA
Sbjct: 338 FYYAESCGQCTPCREGTGWLYRAVQRIYEGRGTYDDLRMLEEVPGQIAGHTICAFGEAAA 397

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  I++FR   E  I+ 
Sbjct: 398 TPVQSFIQHFRHEFEHYIEH 417


>gi|118462706|ref|YP_883190.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium 104]
 gi|254776460|ref|ZP_05217976.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118163993|gb|ABK64890.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium 104]
          Length = 453

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/411 (50%), Positives = 270/411 (65%), Gaps = 8/411 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSD 75
           +L      G +  + K L    D +I  VK SGLRGRGGAGFSTG KWSF+P+     + 
Sbjct: 34  TLQTYHRHGGYAAMKKALAMEPDAVIGMVKDSGLRGRGGAGFSTGTKWSFIPQGDTGAAA 93

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI A+ AFIYVRGE +     
Sbjct: 94  KPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRANHAFIYVRGEVLPVLRR 153

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQ AV E YA+G LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 154 LQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 213

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   
Sbjct: 214 FPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQY 273

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL++ + GG+R G   L    PGGSS P L   +     +DY+G+  +GS 
Sbjct: 274 EAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSSTPLL-TDEHLDVPLDYEGVGGVGSM 330

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G     +
Sbjct: 331 LGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGTAED 390

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ID L ++S  I G++ CALGD AA P+   IK FR      ++   RC F 
Sbjct: 391 IDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAHVEN-GRCPFD 440


>gi|15610286|ref|NP_217666.1| NADH dehydrogenase I chain F [Mycobacterium tuberculosis H37Rv]
 gi|15842726|ref|NP_337763.1| NADH dehydrogenase I, F subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|31794326|ref|NP_856819.1| NADH dehydrogenase I chain F [Mycobacterium bovis AF2122/97]
 gi|121639033|ref|YP_979257.1| putative NADH dehydrogenase I (chain F) nuoF [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148663005|ref|YP_001284528.1| NADH dehydrogenase subunit F [Mycobacterium tuberculosis H37Ra]
 gi|148824344|ref|YP_001289098.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis F11]
 gi|215405148|ref|ZP_03417329.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis 02_1987]
 gi|215432109|ref|ZP_03430028.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis EAS054]
 gi|215447440|ref|ZP_03434192.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis T85]
 gi|218754930|ref|ZP_03533726.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis GM 1503]
 gi|219559196|ref|ZP_03538272.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis T17]
 gi|224991525|ref|YP_002646214.1| putative NADH dehydrogenase I chain F [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800184|ref|YP_003033185.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           1435]
 gi|254233769|ref|ZP_04927094.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis C]
 gi|254365775|ref|ZP_04981820.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis str. Haarlem]
 gi|260188191|ref|ZP_05765665.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202296|ref|ZP_05769787.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           T46]
 gi|260206489|ref|ZP_05773980.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           K85]
 gi|289444714|ref|ZP_06434458.1| NADH oxidoreductase (quinone), F subunit [Mycobacterium
           tuberculosis T46]
 gi|289448830|ref|ZP_06438574.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555423|ref|ZP_06444633.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           605]
 gi|289571361|ref|ZP_06451588.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           T17]
 gi|289575862|ref|ZP_06456089.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           K85]
 gi|289746959|ref|ZP_06506337.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           02_1987]
 gi|289755269|ref|ZP_06514647.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054]
 gi|289759280|ref|ZP_06518658.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85]
 gi|289763333|ref|ZP_06522711.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis GM 1503]
 gi|297635793|ref|ZP_06953573.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           4207]
 gi|297732790|ref|ZP_06961908.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           R506]
 gi|306794903|ref|ZP_07433205.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu005]
 gi|307085896|ref|ZP_07495009.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu012]
 gi|313660123|ref|ZP_07817003.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           V2475]
 gi|54037918|sp|P65568|NUOF_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|54041669|sp|P65567|NUOF_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|1781218|emb|CAB06289.1| PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN F) [Mycobacterium tuberculosis
           H37Rv]
 gi|13883048|gb|AAK47577.1| NADH dehydrogenase I, F subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|31619922|emb|CAD95266.1| PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN F) [Mycobacterium bovis AF2122/97]
 gi|121494681|emb|CAL73162.1| Probable NADH dehydrogenase I (chain F) nuoF [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124599298|gb|EAY58402.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis C]
 gi|134151288|gb|EBA43333.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis str. Haarlem]
 gi|148507157|gb|ABQ74966.1| NADH dehydrogenase subunit F [Mycobacterium tuberculosis H37Ra]
 gi|148722871|gb|ABR07496.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis F11]
 gi|224774640|dbj|BAH27446.1| putative NADH dehydrogenase I chain F [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321687|gb|ACT26290.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           1435]
 gi|289417633|gb|EFD14873.1| NADH oxidoreductase (quinone), F subunit [Mycobacterium
           tuberculosis T46]
 gi|289421788|gb|EFD18989.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440055|gb|EFD22548.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           605]
 gi|289540293|gb|EFD44871.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           K85]
 gi|289545115|gb|EFD48763.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           T17]
 gi|289687487|gb|EFD54975.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           02_1987]
 gi|289695856|gb|EFD63285.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054]
 gi|289710839|gb|EFD74855.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis GM 1503]
 gi|289714844|gb|EFD78856.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85]
 gi|308336689|gb|EFP25540.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu005]
 gi|308364631|gb|EFP53482.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu012]
 gi|326902626|gb|EGE49559.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           W-148]
 gi|328459921|gb|AEB05344.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           4207]
          Length = 445

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/418 (49%), Positives = 272/418 (65%), Gaps = 28/418 (6%)

Query: 16  QGKSLSDSMSRGHWDN--------------------VDKILEKGRDWIINEVKASGLRGR 55
           Q   L+  +SR HWD+                    + K L    D +I+ VK SGLRGR
Sbjct: 4   QATPLTPVISR-HWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGR 62

Query: 56  GGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           GGAGF+TG KWSF+P+     + +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA
Sbjct: 63  GGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIA 122

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYI 171
           ++AI AH AF+YVRGE +     L  AV E YA+G LG N    G+D++++VH GAGAYI
Sbjct: 123 AYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYI 182

Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
           CGEETALL+SLEG++GQPRL+PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   
Sbjct: 183 CGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSM 242

Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           G E + G  L+S+SGHV  P   E  + IT  EL++ + GG+R G   L    PGGSS P
Sbjct: 243 GSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSSTP 300

Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351
            L    +    +DY+G+   GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPC
Sbjct: 301 LLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPC 359

Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           REGT W+ ++ ERL  G     +ID L ++S +I G++ CALGD AA P+   IK+FR
Sbjct: 360 REGTFWLDKIYERLETGRGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFR 417


>gi|308232349|ref|ZP_07664059.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu001]
 gi|308371245|ref|ZP_07667116.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu003]
 gi|308372437|ref|ZP_07667377.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu004]
 gi|308380584|ref|ZP_07490464.2| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu011]
 gi|308214179|gb|EFO73578.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu001]
 gi|308329370|gb|EFP18221.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu003]
 gi|308333199|gb|EFP22050.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu004]
 gi|308361023|gb|EFP49874.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu011]
          Length = 422

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/385 (52%), Positives = 263/385 (68%), Gaps = 7/385 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNAD 85
           +  + K L    D +I+ VK SGLRGRGGAGF+TG KWSF+P+     + +PHYLVVNAD
Sbjct: 13  YQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNAD 72

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PH LIEG +IA++AI AH AF+YVRGE +     L  AV E YA
Sbjct: 73  ESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYA 132

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLYGC
Sbjct: 133 AGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGC 192

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  E
Sbjct: 193 PTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRE 252

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L++ + GG+R G   L    PGGSS P L    +    +DY+G+   GS LGT A+ + D
Sbjct: 253 LLD-YAGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFD 309

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G     +ID L ++S +
Sbjct: 310 ETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDS 369

Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409
           I G++ CALGD AA P+   IK+FR
Sbjct: 370 ILGKSFCALGDGAASPVMSSIKHFR 394


>gi|167970179|ref|ZP_02552456.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis H37Ra]
          Length = 424

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/385 (52%), Positives = 263/385 (68%), Gaps = 7/385 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNAD 85
           +  + K L    D +I+ VK SGLRGRGGAGF+TG KWSF+P+     + +PHYLVVNAD
Sbjct: 15  YQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNAD 74

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PH LIEG +IA++AI AH AF+YVRGE +     L  AV E YA
Sbjct: 75  ESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYA 134

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLYGC
Sbjct: 135 AGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGC 194

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  E
Sbjct: 195 PTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRE 254

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L++ + GG+R G   L    PGGSS P L    +    +DY+G+   GS LGT A+ + D
Sbjct: 255 LLD-YAGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFD 311

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G     +ID L ++S +
Sbjct: 312 ETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDS 371

Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409
           I G++ CALGD AA P+   IK+FR
Sbjct: 372 ILGKSFCALGDGAASPVMSSIKHFR 396


>gi|308374786|ref|ZP_07667861.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu006]
 gi|308340530|gb|EFP29381.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu006]
          Length = 422

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/385 (52%), Positives = 263/385 (68%), Gaps = 7/385 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNAD 85
           +  + K L    D +I+ VK SGLRGRGGAGF+TG KWSF+P+     + +PHYLVVNAD
Sbjct: 13  YQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNAD 72

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PH LIEG +IA++AI AH AF+YVRGE +     L  AV E YA
Sbjct: 73  ESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYA 132

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLYGC
Sbjct: 133 AGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGC 192

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  E
Sbjct: 193 PTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRE 252

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L++ + GG+R G   L    PGGSS P L    +    +DY+G+   GS LGT A+ + D
Sbjct: 253 LLD-YAGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFD 309

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G     +ID L ++S +
Sbjct: 310 ETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDS 369

Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409
           I G++ CALGD AA P+   IK+FR
Sbjct: 370 ILGKSFCALGDGAASPVMSSIKHFR 394


>gi|117927481|ref|YP_872032.1| NADH-quinone oxidoreductase, F subunit [Acidothermus cellulolyticus
           11B]
 gi|117647944|gb|ABK52046.1| NADH dehydrogenase subunit F [Acidothermus cellulolyticus 11B]
          Length = 434

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/401 (51%), Positives = 263/401 (65%), Gaps = 10/401 (2%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G +  + K L    D ++  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADE
Sbjct: 28  GGYQALRKALAMSPDAVLQLVKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVVNADE 86

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           SEPGTCKD  ++   PHTLIEG +IAS+AI AH AFIY+RGE +     L  AV+E  A+
Sbjct: 87  SEPGTCKDIPLLMATPHTLIEGAIIASYAIRAHQAFIYIRGEVVHVIRRLLRAVEEARAA 146

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           G LG +    G+D+DI VH GAGAYICGEETALLESLEG +GQPRL+PPFPA  GLYGCP
Sbjct: 147 GYLGRDILGSGFDLDITVHIGAGAYICGEETALLESLEGYRGQPRLRPPFPATAGLYGCP 206

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T +NNVE+IA VP I+R G  WY   G E + G K+FS+SGHV  P   E  + IT  EL
Sbjct: 207 TVINNVETIASVPAIVRGGVEWYRSMGTEKSPGFKIFSLSGHVARPGQYEAPLGITLREL 266

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           ++   GG+R G   L    PGGSS P   A  +    +D++G  + GS LGT A+ + D 
Sbjct: 267 LDA-AGGMREG-HELKFWTPGGSSTPLFTAEHLD-VPLDFEGPPQHGSMLGTTALQIFDE 323

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           +T +++A+ R   FY HESCG+CTPCREGT W  ++ +RL KG+    +I+ L ++S NI
Sbjct: 324 TTCVVRAVKRWCEFYAHESCGKCTPCREGTFWYAQIFDRLEKGLGTAEDIETLLDLSDNI 383

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR--CNF 424
            GR  CALGD A  P+   I+ FR   +E I  Y +  C F
Sbjct: 384 LGRAFCALGDGATSPVTSSIQYFR---DEYIAHYEQGGCPF 421


>gi|291296251|ref|YP_003507649.1| NADH-quinone oxidoreductase F subunit [Meiothermus ruber DSM 1279]
 gi|290471210|gb|ADD28629.1| NADH-quinone oxidoreductase, F subunit [Meiothermus ruber DSM 1279]
          Length = 438

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/403 (49%), Positives = 268/403 (66%), Gaps = 7/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +LS  ++ G +  + K + +G+DW+I EVK SGLRGRGGAGF TG+KWSFMP+  + + H
Sbjct: 28  TLSYYLAHGGYQAIRKAIAQGQDWVIEEVKKSGLRGRGGAGFPTGLKWSFMPR-NTGKQH 86

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADESEPG+ KDR +M  +PH LIEG +IA  AI A   +IY+RGE+ R  + L A
Sbjct: 87  YIVCNADESEPGSFKDRYLMEDDPHQLIEGMMIAGVAIQASKGYIYIRGEYRRAYDRLIA 146

Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E YA+G LG N    G+  D+ VH GAGAYICGEETAL+ SLEG +  PR+KPPFPA
Sbjct: 147 AIREAYAAGYLGQNVMGTGFSFDLYVHRGAGAYICGEETALMNSLEGLRANPRMKPPFPA 206

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PTT+NNVES+  V  I+ RGA W++  G E ++G KLF +SG    P   E  
Sbjct: 207 QAGLWGMPTTINNVESLCSVVHIIERGADWFASMGTEKSKGHKLFQVSGPFKRPGVYELP 266

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKEMGSGLG 316
           +  TF EL+    GG     + + A+IPGGSS P LP   ++    MDY+ +   GS LG
Sbjct: 267 LGTTFRELLFDWAGGPT---EPIQAIIPGGSSCPPLPWNDEILDTPMDYESISAKGSLLG 323

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMMRVMERLVKGIAQKREI 375
           T  VI +  S  ++ A+W ++ FY HESCG+CTPCREG +GWM+ + E++  G  QK ++
Sbjct: 324 TGGVIGIPASMSMVDAMWNITRFYGHESCGKCTPCREGVSGWMVSLFEKIGTGQGQKGDV 383

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +LL  +   IEGR+ CAL DAA WP++G +K+FR    E ++Q
Sbjct: 384 ELLESMLDQIEGRSFCALADAACWPVRGSLKHFRHQFVEAVEQ 426


>gi|294669098|ref|ZP_06734184.1| NADH oxidoreductase, F subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309090|gb|EFE50333.1| NADH oxidoreductase, F subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 426

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/394 (51%), Positives = 263/394 (66%), Gaps = 6/394 (1%)

Query: 19  SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL  +  +D +I EVK SGLRGRGGAGF +G+KWSFMP+     
Sbjct: 15  TLDEYVKRGGYTALRKILAEKTPQDDVIAEVKTSGLRGRGGAGFPSGLKWSFMPRSFPGE 74

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+R  PH LIEG +I  +A+GA   + Y+ GE     +  
Sbjct: 75  -KYIVCNTDEGEPGTFKDRDIIRFNPHALIEGMIIGGYAMGACAGYNYIHGEIFEGYQRF 133

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           +AA+ E   +G LG N    G+D ++  HHG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 134 EAALAEAREAGFLGKNILGSGFDFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 193

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GL+G PTT+NN E+ A VP I+R G   ++  G  N  GTKLFS+SGHV  P   E
Sbjct: 194 PASFGLFGKPTTINNTETFASVPFIIRDGGQTFADKGIPNAGGTKLFSVSGHVERPGNYE 253

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F +L+    GG+RGG   L AVIPGGSS P +P   M    MDYD + + GS L
Sbjct: 254 VPLGTPFADLLSM-AGGVRGG-KKLKAVIPGGSSSPVIPGDMMMTLTMDYDAISKAGSML 311

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V G  +  ++
Sbjct: 312 GSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIIHRIVNGQGRMEDL 371

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +LL  +  N+ GRTICAL DAA +P++G +K++R
Sbjct: 372 ELLESIGNNMAGRTICALADAAVFPVRGFMKHYR 405


>gi|254468829|ref|ZP_05082235.1| NADH oxidoreductase (quinone), F subunit [beta proteobacterium
           KB13]
 gi|207087639|gb|EDZ64922.1| NADH oxidoreductase (quinone), F subunit [beta proteobacterium
           KB13]
          Length = 437

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/410 (49%), Positives = 271/410 (66%), Gaps = 10/410 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           S+    S G ++ + +IL+   D   +I+E+K SGLRGRGGAGF TG+KWSFMP+   D 
Sbjct: 33  SIKTYQSIGGYEQIKRILKNKIDPQQLIDEIKISGLRGRGGAGFPTGVKWSFMPR-DYDG 91

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N+DE EPGT KDRDI+R+ PH LIEG +I ++ + A   F Y+ GE   +    
Sbjct: 92  TKYIVCNSDEGEPGTFKDRDIIRYNPHQLIEGMIIGAYIMNAQVGFNYIHGEIWEDYVFF 151

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+++   +G LG+N    G+D ++   HG GAYICGEETAL+ES+EGKKGQPR KPPF
Sbjct: 152 EKAIEDARKAGFLGNNILGSGFDFELHAVHGYGAYICGEETALIESIEGKKGQPRYKPPF 211

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G+YG PT VNN E+ A +P I+  G   +   G  N+ GTK+FS+SGHV  P   E
Sbjct: 212 PATYGIYGKPTNVNNTETYASIPWIIEHGGQEFMSHGVPNSGGTKIFSVSGHVEKPGNYE 271

Query: 256 ESMSITFDELIEKHCGGIRGGWDN--LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
             + + F +L+ +  GG+   W N  L AVIPGG S P +PA  +  A +DYDGL ++GS
Sbjct: 272 IQLGMPFRQLLAE-AGGV---WKNRQLKAVIPGGPSTPVVPANIIIDATLDYDGLAQIGS 327

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +G  ++IVMD ST +++A+ RLS F+  ESCGQCTPCREGTGW+ R+++R+ KG A   
Sbjct: 328 SVGAGSMIVMDDSTCMVQALRRLSYFFYEESCGQCTPCREGTGWVYRIIDRIFKGQATLA 387

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           ++DLL +VSK I GRTICALGDAAA P+   IK+FR   E  I      N
Sbjct: 388 DLDLLTDVSKKISGRTICALGDAAATPVLSFIKHFRSEFENFIKHGKSVN 437


>gi|225024119|ref|ZP_03713311.1| hypothetical protein EIKCOROL_00987 [Eikenella corrodens ATCC
           23834]
 gi|224943144|gb|EEG24353.1| hypothetical protein EIKCOROL_00987 [Eikenella corrodens ATCC
           23834]
          Length = 431

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/394 (51%), Positives = 263/394 (66%), Gaps = 6/394 (1%)

Query: 19  SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL  +  +D +I EVK SGLRGRGGAGF +G+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILAEKTPQDDVIAEVKTSGLRGRGGAGFPSGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+R  PH LIEG +I  +A+GA   + Y+ GE     +  
Sbjct: 82  -KYIVCNTDEGEPGTFKDRDIIRFNPHALIEGMIIGGYAMGACAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           +AA+ E   +G LG N    G+D ++  HHG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 141 EAALAEAREAGFLGKNILGSGFDFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 200

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GL+G PTT+NN E+ A VP I+R G   ++  G  N  GTKLFS+SGHV  P   E
Sbjct: 201 PASFGLFGKPTTINNTETFASVPFIIRDGGQTFADKGIPNAGGTKLFSVSGHVERPGNYE 260

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F +L+    GG+RGG   L AVIPGGSS P +P   M    MDYD + + GS L
Sbjct: 261 VPLGTPFADLL-AMAGGVRGG-KKLKAVIPGGSSSPVIPGDMMMTLTMDYDAIAKAGSML 318

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V G  +  ++
Sbjct: 319 GSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIVHRIVNGQGRMEDL 378

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +LL  +  N+ GRTICAL DAA +P++G +K++R
Sbjct: 379 ELLESIGNNMAGRTICALADAAVFPVRGFMKHYR 412


>gi|190575273|ref|YP_001973118.1| putative NADH dehydrogenase I chain F [Stenotrophomonas maltophilia
           K279a]
 gi|190013195|emb|CAQ46828.1| putative NADH dehydrogenase I chain F [Stenotrophomonas maltophilia
           K279a]
          Length = 446

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/417 (49%), Positives = 269/417 (64%), Gaps = 8/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           ++T L+     S    +  G +  + KILE+    + +I  VKASGLRGRGGAGF TG+K
Sbjct: 21  VYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK   +   Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   + Y+
Sbjct: 81  WSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E  + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFEHFEQALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG P+T+NN E+   VP I+R G  W+ G     N G K FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPKCFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +   F +L+E   GG+R G   L   IPGG S+P L A +++   M
Sbjct: 259 VSGCVQNGGNFEVPLGTKFHDLLEM-AGGLRPG-RTLKGAIPGGVSMPVLTAAELKDLPM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD ++ +GSGLG+ A++V+D S   +K   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTIRALGSGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I   H
Sbjct: 377 RIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433


>gi|319638821|ref|ZP_07993579.1| NADH dehydrogenase subunit I F [Neisseria mucosa C102]
 gi|317399725|gb|EFV80388.1| NADH dehydrogenase subunit I F [Neisseria mucosa C102]
          Length = 431

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/395 (52%), Positives = 265/395 (67%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + KIL +   +  +I+EVKASGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYTALRKILSENISQSDVIDEVKASGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+ +  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALAQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEVL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|226227063|ref|YP_002761169.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27]
 gi|226090254|dbj|BAH38699.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27]
          Length = 442

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/405 (49%), Positives = 267/405 (65%), Gaps = 7/405 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           + ++L+   +RG ++ ++K L      I N VK SGLRGRGGAGF TGMKWSFM      
Sbjct: 23  EARTLAGWRARGGYEALEKALATDPVEIQNIVKESGLRGRGGAGFPTGMKWSFMKP--DG 80

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           + HYL  NADESEPGT KDR+IMR  PH L+EG  + + AI A  A+IY+RGEF      
Sbjct: 81  KTHYLCCNADESEPGTFKDREIMRWTPHGLVEGVALGAHAIYAETAYIYIRGEFTEPYAR 140

Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           + AAV+E YA+G+LG+N+   G  VD+ VH GAGAYICGEETAL+ SLEG++G PR+KPP
Sbjct: 141 VCAAVEEAYAAGILGANAMGSGKRVDVHVHRGAGAYICGEETALMNSLEGRRGNPRIKPP 200

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR---GTKLFSISGHVNYP 251
           FPA  GL+G PTT+NNVE++  VP I++ GA WY  FGR +N    GTKLFS+ G+++ P
Sbjct: 201 FPAVAGLFGKPTTINNVETLTAVPYIVKNGAEWYKQFGRADNPKSIGTKLFSVCGNISRP 260

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E ++   F E +   CGG   G + + AVIPGGSSVP L   +   A+MDY+G+  +
Sbjct: 261 GNYEVALGFPFKEFLYDLCGGPLPGRE-IKAVIPGGSSVPILTREEAESALMDYEGMVAV 319

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  VIV D   D+++ I RL+ FY HESC QC+ CREGT W  R+MER+  G   
Sbjct: 320 GTMMGSGGVIVFDDRQDMVRQIARLTRFYAHESCAQCSQCREGTAWTTRIMERIRDGQGT 379

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             ++D L  ++ N+ G+TIC L D+ A P+   +K FR   E +I
Sbjct: 380 AEDLDTLLSIADNMSGKTICVLSDSCATPVVSGLKKFRHEFEAKI 424


>gi|296169187|ref|ZP_06850840.1| NADH-quinone oxidoreductase subunit F [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896085|gb|EFG75752.1| NADH-quinone oxidoreductase subunit F [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 440

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/385 (52%), Positives = 260/385 (67%), Gaps = 7/385 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNAD 85
           +  + K L    D +I  VK SGLRGRGGAGFSTG KWSF+P+     + +PHYLVVNAD
Sbjct: 34  YQALKKALAMAPDDVIATVKDSGLRGRGGAGFSTGTKWSFIPQGDTGAAAKPHYLVVNAD 93

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PH L+EG +IA++AI A  AFIYVRGE +     LQ AV E YA
Sbjct: 94  ESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVRGEVLPVLRRLQNAVAEAYA 153

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG + +  G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLYGC
Sbjct: 154 AGYLGRDINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGC 213

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  E
Sbjct: 214 PTVINNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLSGHVARPGQYEAPLGITLRE 273

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L+  + GG+R G   L    PGGSS P L   +     +DY+G+   GS LGT A+ + D
Sbjct: 274 LL-AYAGGVRAG-HRLKFWTPGGSSTPLL-TDEHLDVPLDYEGVGAAGSMLGTKALEIFD 330

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G     +ID L ++S  
Sbjct: 331 ETTCVVRAVQRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGTNEDIDKLLDISDT 390

Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409
           I G++ CALGD AA P+   IK FR
Sbjct: 391 ILGKSFCALGDGAASPVMSSIKYFR 415


>gi|167585976|ref|ZP_02378364.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ubonensis Bu]
          Length = 440

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/415 (50%), Positives = 279/415 (67%), Gaps = 10/415 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA++E  A+G LG+N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALEEARAAGFLGNNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y+  G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLTVGPQAYAELGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVIPGDIMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|111220504|ref|YP_711298.1| NADH dehydrogenase I chain F [Frankia alni ACN14a]
 gi|111148036|emb|CAJ59702.1| NADH dehydrogenase I chain F [Frankia alni ACN14a]
          Length = 443

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/370 (54%), Positives = 261/370 (70%), Gaps = 5/370 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +K SGLRGRGGAGF TGMKW F+P+    +PHYLV+NADE EPGTCKD  +M+ 
Sbjct: 40  DDLIKLIKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVINADEGEPGTCKDAPLMKA 98

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH+L+EG +IA++A+ A+ AFIY+RGE I     L+AAV E YA+G LG +    G+D+
Sbjct: 99  DPHSLVEGIIIAAYAVRANRAFIYLRGELIHAGRRLRAAVAEAYAAGYLGRDILGSGFDL 158

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  PT VNNVE+IA VP 
Sbjct: 159 DLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPATHGLYASPTVVNNVETIATVPY 218

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  G  W+   GRE   G K+FS+SGHV  P   E  M  T  EL+E   GG+RGG   
Sbjct: 219 IVNYGVDWFRTMGRERAPGPKIFSLSGHVTRPGQYEVPMGTTLRELLEL-AGGVRGG-RA 276

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A  PGGSS P L A  +  A +D++G++E GS LGTAA+++MD +TD+++ + RL+ F
Sbjct: 277 LKAWTPGGSSTPMLTAEHLD-APLDFEGMQEAGSLLGTAALMIMDETTDMLRVVRRLTQF 335

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           Y HESCG+CTPCREGT WM++++ RL +G     ++D L +   NI GR  CAL D A  
Sbjct: 336 YAHESCGKCTPCREGTSWMVKILSRLERGQGDASDVDTLVDACDNIFGRAFCALADGATS 395

Query: 400 PIQGLIKNFR 409
           PI   IK FR
Sbjct: 396 PIVSGIKYFR 405


>gi|311744397|ref|ZP_07718199.1| NADH-quinone oxidoreductase subunit F [Aeromicrobium marinum DSM
           15272]
 gi|311312363|gb|EFQ82278.1| NADH-quinone oxidoreductase subunit F [Aeromicrobium marinum DSM
           15272]
          Length = 436

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/392 (52%), Positives = 263/392 (67%), Gaps = 5/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L+   ++G +D + + +      II  VK SGLRGRGGAGF TGMKWSF+P   +  P 
Sbjct: 20  TLAAYEAQGGYDGLRRAVTMEPGEIIELVKDSGLRGRGGAGFPTGMKWSFIP-ADNPNPR 78

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD  +M   PHTL+EG +IAS AIGA  AFIYVRGE +     LQA
Sbjct: 79  YLVVNADESEPGTCKDIPLMMASPHTLVEGVIIASRAIGAETAFIYVRGEVLHVVRRLQA 138

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV E Y +G LG++ +  G  +D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA
Sbjct: 139 AVREAYEAGYLGADVAGSGTRLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPA 198

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLY  PT +NNVESIA VP IL  G  W+   G E ++G  L+S+SGHV  P   E  
Sbjct: 199 VAGLYASPTVINNVESIASVPAILAHGVDWFGSMGTEKSKGFTLYSLSGHVKRPGQYEAP 258

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           + IT  E++E   GG+R G   L    PGGSS P L A  +    +DY+G+   GS LGT
Sbjct: 259 LGITLREILELG-GGMRDG-SELKFWTPGGSSTPILTAEHLD-VPLDYEGVGAAGSMLGT 315

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A+ V D++T +++ + R + FYKHESCG+CTPCREGT W+++ + RL  G  Q  +I+L
Sbjct: 316 KALQVFDQTTSVVRCVLRWTEFYKHESCGKCTPCREGTWWLVQTLRRLDSGQGQAGDIEL 375

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           L ++  NI GR+ CALGD A  PI   I+ FR
Sbjct: 376 LLDLCDNILGRSFCALGDGATSPITSAIQYFR 407


>gi|254821139|ref|ZP_05226140.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium
           intracellulare ATCC 13950]
          Length = 446

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/395 (50%), Positives = 265/395 (67%), Gaps = 7/395 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSD 75
           +L      G ++ + K L    D +I  VK SGLRGRGGAGFSTG KWSF+P+     + 
Sbjct: 28  TLETYRRHGGYEAMKKALAMEPDAVIGVVKDSGLRGRGGAGFSTGTKWSFIPQGDTGAAA 87

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  +M   PH L+EG +IA++AI A+ AFIYVRGE +     
Sbjct: 88  KPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRANHAFIYVRGEVLPVLRR 147

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQ AV E YA+G LG + +  G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 148 LQNAVAEAYAAGYLGRDINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 207

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   
Sbjct: 208 FPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQY 267

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+   GS 
Sbjct: 268 EAPLGITLRELL-AYAGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGGAGSM 324

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G     +
Sbjct: 325 LGTKALEIFDETTCVVRAVQRWTYFYKHESCGKCTPCREGTFWLDKIYERLEAGTGTHED 384

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +D L ++S +I G+  CALGD AA P+   I+ FR
Sbjct: 385 LDKLLDISDSILGKAFCALGDGAASPVMSSIQYFR 419


>gi|325954439|ref|YP_004238099.1| NADH-quinone oxidoreductase, F subunit [Weeksella virosa DSM 16922]
 gi|323437057|gb|ADX67521.1| NADH-quinone oxidoreductase, F subunit [Weeksella virosa DSM 16922]
          Length = 453

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/411 (50%), Positives = 275/411 (66%), Gaps = 19/411 (4%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G + N +K  +   + I+ EVK SGLRGRGGAGF TGMKWSF+ K     P +LVVNADE
Sbjct: 25  GGYSNAEKAFKMKEEEILEEVKTSGLRGRGGAGFPTGMKWSFLAKP-EGVPRHLVVNADE 83

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           SEPGT KDR +M + PH LIEG +I+SF +G++ +FIY+RGE+    E L+ A+DE  A+
Sbjct: 84  SEPGTFKDRYLMEYIPHLLIEGILISSFCLGSNTSFIYIRGEYAWIAEILEQAIDEAKAA 143

Query: 147 GLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           G LG N +  G+D+++ V  GAGAYICGEETALLESLEGK+G PR+KPPFPA  GL+G P
Sbjct: 144 GWLGKNIQGTGFDLEVYVQRGAGAYICGEETALLESLEGKRGNPRIKPPFPAVKGLWGRP 203

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T VNNVE+IA V  I+  G   YS  G   + GTKL S  G++N P   E  M+IT +E 
Sbjct: 204 TVVNNVETIASVVPIIEIGGDAYSKIGVGRSTGTKLISACGNINKPGVYEIDMTITVEEF 263

Query: 266 I--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE----M 311
           I  +++CGGI  G   L A IPGGSSVP LPA        GQ R   M+Y+ L E     
Sbjct: 264 IYSDEYCGGIANG-KRLKACIPGGSSVPILPANLLLRTTNGQPR--YMNYESLAEGGFQS 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+   IV+D   DI+   + L+ FY+HESCGQC+PCREGTGWM ++++R+ +G  +
Sbjct: 321 GTMMGSGGFIVLDEDQDIVYHTYTLARFYRHESCGQCSPCREGTGWMEKLLKRIDEGKGK 380

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             +I+LL+++ + IEG TIC LGDAAAWP+   I++FR   E  I+    C
Sbjct: 381 ISDIELLWDIQRKIEGNTICPLGDAAAWPVASAIRHFRDEFEWHINHPEEC 431


>gi|238028138|ref|YP_002912369.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Burkholderia glumae BGR1]
 gi|237877332|gb|ACR29665.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Burkholderia glumae BGR1]
          Length = 438

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/417 (50%), Positives = 278/417 (66%), Gaps = 9/417 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I  NL G +   L D ++RG +  + +I+E+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILANLNG-ENWRLEDYVARGGYQQLRRIIEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    +  YLV N+DE EPGT KDRDI+R  PH +IEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHAVIEGMAIGAYAMGITAGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLE 183
            GE        +AA++E  A+G LG+N  LG  +   +  HHG GAY+CGEETALLESLE
Sbjct: 131 HGEIFEVYRRFEAALEEARAAGYLGANI-LGSEFSFQLHAHHGYGAYVCGEETALLESLE 189

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS
Sbjct: 190 GKKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQHYLELGKPNNGGTKIFS 249

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V  P   E  +   F  L+E   GG+RGG   L AVIPGGSS P +P   M    M
Sbjct: 250 VSGDVERPGNYEVPLGTPFSALLEL-AGGMRGG-RKLKAVIPGGSSAPVIPGDTMMQIDM 307

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV++
Sbjct: 308 DYDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVK 367

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R+  G  +K ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 368 RIEDGQGRKEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|257054397|ref|YP_003132229.1| NADH dehydrogenase subunit F [Saccharomonospora viridis DSM 43017]
 gi|256584269|gb|ACU95402.1| NADH dehydrogenase subunit F [Saccharomonospora viridis DSM 43017]
          Length = 424

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/382 (52%), Positives = 257/382 (67%), Gaps = 5/382 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  + K L    + ++  +K SGLRGRGGAGF  G+KWSFMP+   D+PHYLV+NADE E
Sbjct: 26  YTALRKALSGTPEQLVQLIKDSGLRGRGGAGFPAGVKWSFMPQ-NDDKPHYLVINADEGE 84

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  +M  +PH+LIEGC+IAS+A+ AH  FIYVRGE +     L +AV E Y +G 
Sbjct: 85  PGTCKDIPLMMADPHSLIEGCIIASYAMRAHRCFIYVRGEALHPIRRLNSAVREAYEAGY 144

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G+D+DI VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA+ GLY  PTT
Sbjct: 145 LGKNILGSGFDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPASAGLYAAPTT 204

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+IA VP I+  GA W+   G E + G K++SISGHV  P   E  +  T  +L+E
Sbjct: 205 VNNVETIASVPYIVNGGAEWFRKMGTEKSPGPKIYSISGHVEKPGQYEAPLGTTLRQLLE 264

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG++ G   L    PGGSS P   A  +    +D++G  E GS LGT AV V + + 
Sbjct: 265 -MAGGMKDGIP-LKFWTPGGSSTPLFTAEHID-VPLDFEGAAEAGSMLGTTAVQVFNETV 321

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +  A+ + + FYKHESCG+CTPCREGT W+ +++ER+V G   + +ID L ++  NI G
Sbjct: 322 SVPWAVMKWTQFYKHESCGKCTPCREGTYWLTQILERMVDGRGTESDIDTLLDICDNILG 381

Query: 388 RTICALGDAAAWPIQGLIKNFR 409
           R+ CALGD A  PI   IK FR
Sbjct: 382 RSFCALGDGATSPITSAIKYFR 403


>gi|326799005|ref|YP_004316824.1| NADH-quinone oxidoreductase, F subunit [Sphingobacterium sp. 21]
 gi|326549769|gb|ADZ78154.1| NADH-quinone oxidoreductase, F subunit [Sphingobacterium sp. 21]
          Length = 450

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/403 (51%), Positives = 265/403 (65%), Gaps = 16/403 (3%)

Query: 25  SRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
            +G +  V+K L+    + ++ EVK SGLRGRGGAGF TGMKWSF+ K     P YLV N
Sbjct: 23  QKGGYRAVEKALKTLSPEEVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLVCN 81

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGT KDR +M H PH LIEG ++AS+A+GA+ ++IYVRGE + +   L+ A++E 
Sbjct: 82  ADESEPGTFKDRYLMTHIPHALIEGMIVASYALGANTSYIYVRGEMMPQIRILERAIEEA 141

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
            A+G LG+N    GY++++ V  G GAYICGEETALLESLEGK+G PR+KPPFPA  GLY
Sbjct: 142 KAAGFLGTNILGTGYNLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAVAGLY 201

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
            CPT VNNVESIA    IL  G   Y+  G E + GTKL S SG++N P   E  + +  
Sbjct: 202 NCPTVVNNVESIAATVPILNMGGEEYAKIGIERSTGTKLISASGNINKPGVYEIELGLPV 261

Query: 263 DELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM------RGAIMDYDGLKE---- 310
           +E I  +++CGGI  G   L AV+ GGSSVP LPA  +         +M Y+ L +    
Sbjct: 262 EEFIYSDEYCGGITNG-KRLKAVVAGGSSVPILPANLILKTAKGENRLMTYESLADGGFA 320

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            G+ LG+   IV D    I++  W  + FY HESCGQC+PCREGTGWM +V+ RL  G  
Sbjct: 321 TGTMLGSGGFIVFDEDQCIVRNTWNFARFYHHESCGQCSPCREGTGWMEKVLHRLEYGHG 380

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +  +IDLL +VSK IEG TIC LGDAAAWP+   I++FR   E
Sbjct: 381 KMSDIDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFE 423


>gi|298370378|ref|ZP_06981694.1| NADH oxidoreductase (quinone), F subunit [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298281838|gb|EFI23327.1| NADH oxidoreductase (quinone), F subunit [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 431

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/395 (51%), Positives = 264/395 (66%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + + RG +  + +IL +   +  +I++VK SGLRGRGGAGF TG+KWSFMP+     
Sbjct: 22  TLDEYVKRGGYSALRRILSENISQTDVIDQVKTSGLRGRGGAGFPTGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +AA+ +  A+G LG N  LG  ++ ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 141 EAALAQARAAGFLGKNI-LGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A VP I+R G   ++  G  N  GTKLF ISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIVRDGGQAFADKGIPNAGGTKLFCISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F E++ K  GG+RGG   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVPLGTPFAEIL-KMAGGMRGG-KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  +
Sbjct: 318 LGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMED 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +DLL  V   + GRTICAL DAA +P++   K+FR
Sbjct: 378 LDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFR 412


>gi|161524209|ref|YP_001579221.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           ATCC 17616]
 gi|189351034|ref|YP_001946662.1| NADH dehydrogenase I subunit F [Burkholderia multivorans ATCC
           17616]
 gi|221199661|ref|ZP_03572705.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD2M]
 gi|221205439|ref|ZP_03578454.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD2]
 gi|221211740|ref|ZP_03584719.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD1]
 gi|160341638|gb|ABX14724.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           ATCC 17616]
 gi|189335056|dbj|BAG44126.1| NADH dehydrogenase I chain F [Burkholderia multivorans ATCC 17616]
 gi|221169101|gb|EEE01569.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD1]
 gi|221174277|gb|EEE06709.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD2]
 gi|221180946|gb|EEE13349.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD2M]
          Length = 436

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/403 (51%), Positives = 275/403 (68%), Gaps = 10/403 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G++  L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGENWHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E        +AA++E  A+G LG N  +G  +   +  HHG GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYRRFEAALEEARAAGFLGDNI-MGSEFSFQLHAHHGYGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+S
Sbjct: 192 KGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLELGKPNNGGTKIFSVS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  +   F  L+E   GG+RGG   + AVIPGGSS P +P   M    MDY
Sbjct: 252 GDVERPGNYEVPLGTPFATLMEL-AGGMRGG-KKIKAVIPGGSSAPVVPGDIMMQTDMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + ++GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R+
Sbjct: 310 DSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++
Sbjct: 370 EHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHY 412


>gi|88812971|ref|ZP_01128214.1| NADH dehydrogenase I chain F [Nitrococcus mobilis Nb-231]
 gi|88789749|gb|EAR20873.1| NADH dehydrogenase I chain F [Nitrococcus mobilis Nb-231]
          Length = 427

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/395 (52%), Positives = 271/395 (68%), Gaps = 7/395 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L +    G +  + K+ E+    + +I E+K S LRGRGGAGF TG+KWSFMP+    +
Sbjct: 17  TLDNYRKVGGYQALQKLFEQKVKPEEVIEEIKRSALRGRGGAGFPTGIKWSFMPRNAPGQ 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER-ES 135
             Y+V N+DESEPGTCKDRDI+R+ PH LIEG VIA +A+G    + Y+RGEF+RE  + 
Sbjct: 77  -KYIVCNSDESEPGTCKDRDILRYNPHALIEGMVIAGYAMGVSVGYNYLRGEFMREPFQR 135

Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           ++ A+DE  A+G +G N +  G+   +   +GAGAYICGEE+ LLESLEGKKG PR KPP
Sbjct: 136 MEQALDEARAAGYIGENIQGRGFGFQLHNVYGAGAYICGEESGLLESLEGKKGMPRYKPP 195

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLYG PTTVNN E+ A VP+I+R GA W+   GR NN G K FS+SGHV  P   
Sbjct: 196 FPAQFGLYGRPTTVNNTETFASVPSIIRNGAEWFLELGRPNNGGVKCFSVSGHVVKPGNY 255

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F EL+ K  GG+R     L AVIPGGSS+P +P  QM    MDYD L + GSG
Sbjct: 256 EVPLGTPFRELL-KMAGGVRDE-HKLKAVIPGGSSMPMVPGDQMLELDMDYDSLVKAGSG 313

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+  V+VMD +TD+IK I R+S FY  ESCGQCTPCREG GWM RV++R+ +G  +  +
Sbjct: 314 LGSGGVVVMDETTDMIKVILRISRFYYAESCGQCTPCREGCGWMYRVIKRIYEGKGRMAD 373

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++LL   +  I G TICA G+AAAWP+Q ++K++R
Sbjct: 374 LELLESAAGQIAGHTICAFGEAAAWPVQSVLKHWR 408


>gi|326382758|ref|ZP_08204448.1| NADH-quinone oxidoreductase subunit F [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198348|gb|EGD55532.1| NADH-quinone oxidoreductase subunit F [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 459

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/396 (50%), Positives = 265/396 (66%), Gaps = 8/396 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC----S 74
           +L   + +  +  +   L    D +I +VKASGLRGRGGAGF  G KWSF+P+      +
Sbjct: 30  TLRSYLRQNGYQGLKSALRLSPDEVIEQVKASGLRGRGGAGFPVGTKWSFIPQGPRPGGA 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D PHYLVVNADESEPGTCKD  +M   PHTLIEG +IA++AI AH AFIYVRGE      
Sbjct: 90  DTPHYLVVNADESEPGTCKDMPLMLASPHTLIEGVIIAAYAIRAHHAFIYVRGEVAGVIR 149

Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ AVDE Y++GL+G +    G+ +D++VH GAGAYICGEETALL+SLEG++GQPRL+P
Sbjct: 150 RLRTAVDEAYSAGLIGRDIFGSGFGMDLVVHAGAGAYICGEETALLDSLEGRRGQPRLRP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY  PT VNNVESIA VP+I+R G+ W+  FG E + G  ++S+SGHV  P  
Sbjct: 210 PFPAVAGLYASPTVVNNVESIASVPSIMRNGSDWFREFGTEKSPGFTMYSLSGHVARPGQ 269

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  + IT  EL++   GG+R G   L    PGGSS P   A  +    +DY+G+   GS
Sbjct: 270 YEAPLGITLRELLDL-AGGVRAG-HQLKFWTPGGSSTPMFTAEHLD-VPLDYEGVGGAGS 326

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT A+ + D +  +++A+ R + FY HESCG+CTPCREGT WM+++M RL  G   + 
Sbjct: 327 MLGTKAIQIFDETVCVVRAVLRWTEFYAHESCGKCTPCREGTYWMVQMMRRLEAGEGTED 386

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++  L E++ ++ G++ CALGDA+  PI   + +FR
Sbjct: 387 DLTTLTEITDSVVGKSFCALGDASGAPITSSLAHFR 422


>gi|217970161|ref|YP_002355395.1| NADH-quinone oxidoreductase, F subunit [Thauera sp. MZ1T]
 gi|217507488|gb|ACK54499.1| NADH-quinone oxidoreductase, F subunit [Thauera sp. MZ1T]
          Length = 439

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/421 (50%), Positives = 277/421 (65%), Gaps = 8/421 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAG 59
           ++ Q  I     G +   L D ++RG +  + KIL +   +D II E+K S LRGRGGAG
Sbjct: 1   MSTQGMILAGCDGDRTWRLQDYVARGGYSALRKILAEKIPQDAIIAELKTSVLRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWSFMP+       YL  N+DE EPGT KDRDI+R+ PH++IEG  IA++A+GA 
Sbjct: 61  FPTGLKWSFMPRSFPGD-KYLACNSDEGEPGTFKDRDILRYNPHSVIEGMAIAAYAMGAA 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177
             + Y+ GE        + A+ E + +G +G N  LG D   ++  HHG GAYICGEETA
Sbjct: 120 RGYNYIHGEIFETYSRFEEALAEAHEAGFIGRNI-LGSDFSFELFAHHGYGAYICGEETA 178

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLES+EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   +   G+ NN 
Sbjct: 179 LLESIEGKKGQPRFKPPFPASYGLYGKPTTINNTETFASVPFIMNMGGEAFLNLGKPNNG 238

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G KLFS+SGHVN P   E  +   F EL+E   GG+RGG   + AVIPGGSS P +P G 
Sbjct: 239 GMKLFSVSGHVNRPGNYEIPLGTPFAELLEM-AGGMRGG-RKIKAVIPGGSSAPVVPGGV 296

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    MDYD + + GS LG+ AVIVMD +T +++A+ RLS FY  ESCGQCTPCREGTGW
Sbjct: 297 MMDCTMDYDSISKAGSMLGSGAVIVMDETTCMVRALERLSYFYFEESCGQCTPCREGTGW 356

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + RV+ R+  G+ +  ++DLL  V+ NI GRTICALGDAA+ P+Q  +K+F    E  I+
Sbjct: 357 LYRVVHRIEHGLGRPDDLDLLNSVTTNIMGRTICALGDAASMPVQSFVKHFGSEFEYHIE 416

Query: 418 Q 418
            
Sbjct: 417 N 417


>gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase subunit F [Gordonia bronchialis DSM
           43247]
 gi|262083763|gb|ACY19731.1| NADH-quinone oxidoreductase, F subunit [Gordonia bronchialis DSM
           43247]
          Length = 706

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/396 (50%), Positives = 266/396 (67%), Gaps = 10/396 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77
           +L + +    +  + K L+   D II  +KASGLRGRGGAGF  GMKWSF+P+  SD P 
Sbjct: 286 TLDNYLQHNGYQGLRKALDTPPDDIIELIKASGLRGRGGAGFPVGMKWSFIPQ--SDDPD 343

Query: 78  ---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
              HYLVVNADESEPGTCKD  +M   PH+L+EG +IA++AI AH AFIYVRGE      
Sbjct: 344 APPHYLVVNADESEPGTCKDMPLMLASPHSLVEGVIIAAYAIRAHHAFIYVRGEVASVIR 403

Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ AVD+ YA+G LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+P
Sbjct: 404 RLRTAVDDAYAAGYLGRDILGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRP 463

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY  PT VNNVESIA VP I+R G  W+   G E + G  L+S+SGHV  P  
Sbjct: 464 PFPAVAGLYASPTVVNNVESIASVPPIIRNGVDWFRSMGTEKSPGFTLYSLSGHVERPGQ 523

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E ++ +T  EL+++  GG+R G   L    PGGSS P L A  +    +DY+G+   GS
Sbjct: 524 YEAALGVTLRELLDR-AGGVRAG-HQLKFWTPGGSSTPLLTAEHL-DVPLDYEGVGAAGS 580

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT A+ + D +T ++ A+ R + FY HESCG+CTPCREGT W++++++RL        
Sbjct: 581 MLGTKALQIFDETTCVVGAVLRWTQFYAHESCGKCTPCREGTYWLVQLLKRLETEGGTTA 640

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++D L +V+ +I G++ CALGD A  PI   +K FR
Sbjct: 641 DLDTLADVTNSIVGKSFCALGDGAGSPIVSSLKYFR 676


>gi|24213590|ref|NP_711071.1| NADH dehydrogenase (ubiquinone) chain F [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24194382|gb|AAN48089.1| NADH dehydrogenase (ubiquinone) chain F [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 443

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/390 (49%), Positives = 263/390 (67%), Gaps = 4/390 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + K L+   D II EVK SGLRGRGGAGF TG+KWSF+PK    +P Y++ NADE E
Sbjct: 28  YDGMKKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYIICNADEGE 86

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR ++ + PH +IEG +I + AIG++  F Y+RGEF +  +++QAA+DE Y+ G 
Sbjct: 87  PGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGY 146

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G+D D+I++ GAGAYICGEETAL+ SLEG++G PRLKPPFPA  GLY  PT 
Sbjct: 147 LGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTV 206

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+ + +P IL +GA WYS  G E + GT+LFS+SGHV  P   E  +     EL+ 
Sbjct: 207 VNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVKKPGVYEIELGTPLLELVN 266

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
             CGGI      L A+IPGGSSVP L A + + A MD++ +    + LG+ AVIV+   T
Sbjct: 267 DLCGGIIDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEGT 325

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE- 386
           DI++  +R + FY HESCGQCTPCREGT W+  ++ ++ +G     +IDL++ +S+N+E 
Sbjct: 326 DIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEG 385

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           G TIC L DA    ++  ++ FR   + ++
Sbjct: 386 GTTICPLSDACVGAVRPALQKFRSEFDAKL 415


>gi|320107665|ref|YP_004183255.1| NADH dehydrogenase (quinone) [Terriglobus saanensis SP1PR4]
 gi|319926186|gb|ADV83261.1| NADH dehydrogenase (quinone) [Terriglobus saanensis SP1PR4]
          Length = 440

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/416 (47%), Positives = 266/416 (63%), Gaps = 5/416 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           D+ +I +  +G     +   +    +  V   +  G +W+I E+KASGLRGRGGAGF TG
Sbjct: 9   DEVKILSRRFGQGAAEIEKYVEMDGYKAVQNAITNGPEWVITEMKASGLRGRGGAGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSF+PKV S++P Y++VN DESEPGTCKD  I  H+PH +IEG +IA  AIGA   FI
Sbjct: 69  LKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLHDPHAVIEGTMIAGLAIGAKMGFI 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLES 181
           Y+RGE+    + ++ AV + YA G LG N     G D DI+   GAGAY  GEE+AL+ES
Sbjct: 128 YLRGEYRYLLKIVEKAVADAYAKGYLGKNIFGHEGVDFDIVTQTGAGAYEVGEESALMES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK+G PR+KPPFPA VGLYG PT +NN E+IA  P IL  G   Y+  G E N GT+L
Sbjct: 188 LEGKRGIPRIKPPFPAIVGLYGGPTVINNAETIASAPPILLMGGEAYAKVGSERNGGTRL 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ISGHVN P   E  M  +  + I +  GGI+GG   L AV+PGGSS P L   ++   
Sbjct: 248 FGISGHVNKPGVYELPMGYSLRKAIYEVAGGIKGG-RALKAVVPGGSSCPVLLPEEIDVG 306

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+D + + G+ LG+  ++V+D +  I++   R   FY+HESCG C PCREGT W+++ 
Sbjct: 307 -LDFDQMGKAGTMLGSGGIVVLDETVSIVEFAMRTMKFYQHESCGWCIPCREGTDWLLKT 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R   G   K++I+ +  +++N+ GRT C LGDAAA P  G IK FR   EE ++
Sbjct: 366 LTRFYDGGGNKKDINNIQYLAENMMGRTFCPLGDAAAMPTLGFIKKFRHEFEEYLE 421


>gi|45658580|ref|YP_002666.1| NADH dehydrogenase subunit I F [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601824|gb|AAS71303.1| NADH dehydrogenase I F subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 443

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/390 (49%), Positives = 263/390 (67%), Gaps = 4/390 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + K L+   D II EVK SGLRGRGGAGF TG+KWSF+PK    +P Y++ NADE E
Sbjct: 28  YDGMKKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYIICNADEGE 86

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR ++ + PH +IEG +I + AIG++  F Y+RGEF +  +++QAA+DE Y+ G 
Sbjct: 87  PGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAIQAAIDEAYSKGY 146

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G+D D+I++ GAGAYICGEETAL+ SLEG++G PRLKPPFPA  GLY  PT 
Sbjct: 147 LGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTV 206

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+ + +P IL +GA WYS  G E + GT+LFS+SGHV  P   E  +     EL+ 
Sbjct: 207 VNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVKKPGVYEIELGTPLLELVN 266

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
             CGGI      L A+IPGGSSVP L A + + A MD++ +    + LG+ AVIV+   T
Sbjct: 267 DLCGGIIDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEGT 325

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE- 386
           DI++  +R + FY HESCGQCTPCREGT W+  ++ ++ +G     +IDL++ +S+N+E 
Sbjct: 326 DIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEG 385

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           G TIC L DA    ++  ++ FR   + ++
Sbjct: 386 GTTICPLSDACVGAVRPALQKFRSEFDAKL 415


>gi|262195156|ref|YP_003266365.1| NADH-quinone oxidoreductase, F subunit [Haliangium ochraceum DSM
           14365]
 gi|262078503|gb|ACY14472.1| NADH-quinone oxidoreductase, F subunit [Haliangium ochraceum DSM
           14365]
          Length = 445

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/436 (47%), Positives = 276/436 (63%), Gaps = 28/436 (6%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q ++ T  +G  + ++++   + G +    + L   R+ I+ EVKAS LRGRGGAGF TG
Sbjct: 6   QTKVVTQHFGKDEARTIAGYETLGGYAVAKRALGMAREQILAEVKASNLRGRGGAGFPTG 65

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW F+P    D   +LV NADESEPGTCKDR+++  +PH LIEG ++++ A+GA   +I
Sbjct: 66  VKWGFVPAGSKDV--HLVCNADESEPGTCKDRELLFWDPHRLIEGMIVSAHALGAVHNYI 123

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE +RE   LQ AV E Y  G LG N    G    + VH GAGAYICGEETALL SL
Sbjct: 124 YIRGEMMREVLVLQDAVREAYERGYLGDNIFGTGKACHLTVHRGAGAYICGEETALLNSL 183

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR--GTK 240
           EG +GQPRLKPPFPA  GL+G PT VNNVE++  VPTI+ +G +W++  G E  R  GT+
Sbjct: 184 EGLRGQPRLKPPFPAVKGLFGNPTVVNNVETLMNVPTIIDKGGAWFAALGPEGGRSGGTR 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL------- 293
           +  +SGHV  P   E  M+ITF++LI++ CGG+  G   + AVIPGGSS+P L       
Sbjct: 244 IVCVSGHVEKPGVYELPMTITFNQLIDEVCGGVWKG-RKVKAVIPGGSSMPPLTAEELDV 302

Query: 294 --------------PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
                         P   +RG   D  G + + +  G+  ++VMD  TD++KA WR+  F
Sbjct: 303 PIEFDALMTDERIRPVEVLRGQQFDMGGGRALRTMAGSGGIVVMDDHTDVVKACWRIMKF 362

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           Y HESCGQCTPCREGTGW+ ++  R+  G  +  +IDLL ++S  I G +ICALG+AAAW
Sbjct: 363 YAHESCGQCTPCREGTGWLEQICRRVAHGGGKPGDIDLLAQISHGIAGNSICALGEAAAW 422

Query: 400 PIQGLIKNFRPLIEER 415
           P+ G I  FR   E +
Sbjct: 423 PMMGFITKFRDEFEAK 438


>gi|288917188|ref|ZP_06411557.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EUN1f]
 gi|288351379|gb|EFC85587.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EUN1f]
          Length = 445

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/382 (52%), Positives = 262/382 (68%), Gaps = 5/382 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  + + L +  D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLV+NADE E
Sbjct: 28  YQGLRRALAQAPDDLIKLVKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVINADEGE 86

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  +M+ +PH+LIEG VIA++A+ A+ AFIY+RGE I     L+AAV E Y +G 
Sbjct: 87  PGTCKDAPLMKADPHSLIEGIVIAAYAVRANRAFIYLRGELIHAARRLRAAVAEAYEAGY 146

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  PT 
Sbjct: 147 LGRDILGSGFDLELVVHSGAGAYICGEETALLDSLEGRRGQPRLRPPFPATHGLYASPTV 206

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+IA VP I+  G  W+   GRE   G K++S+SGHV  P   E  M  T  EL+E
Sbjct: 207 VNNVETIATVPFIVNYGVDWFRSMGRERAPGPKIYSLSGHVTRPGQYEAPMGTTLRELLE 266

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+ GG   L A  PGGSS P L A  +    +D++G++E GS LGTAA+++MD + 
Sbjct: 267 M-AGGVLGG-RKLKAWTPGGSSTPLLTADHLD-VPLDFEGVQEAGSLLGTAALMIMDETV 323

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           D++  + RL+ FY HESCG+CTPCREGT WM++++ R+ +G     ++D L +   NI G
Sbjct: 324 DMLPVVRRLTQFYAHESCGKCTPCREGTTWMVQILSRMERGHGDSDDVDTLVDACDNIFG 383

Query: 388 RTICALGDAAAWPIQGLIKNFR 409
           R  CAL D A  PI   IK+FR
Sbjct: 384 RAFCALADGATSPIVSGIKHFR 405


>gi|330817787|ref|YP_004361492.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Burkholderia
           gladioli BSR3]
 gi|327370180|gb|AEA61536.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Burkholderia
           gladioli BSR3]
          Length = 439

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/417 (49%), Positives = 277/417 (66%), Gaps = 9/417 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I  NL G +   L D ++RG +  + +I+E+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILANLNG-ENWRLEDYVARGGYKQLRRIIEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    +  YLV N+DE EPGT KDRDI+R  PH++IEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPGQ-KYLVCNSDEGEPGTFKDRDILRWNPHSVIEGMAIGAYAMGITAGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLE 183
            GE        + A++E  A+G LG+N  LG  +   +  HHG GAY+CGEETALLESLE
Sbjct: 131 HGEIFEVYRRFEEALEEARAAGYLGNNI-LGSEFSFQLHAHHGYGAYVCGEETALLESLE 189

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK++S
Sbjct: 190 GKKGQPRFKPPFPASFGVYGKPTTINNAETFAAVPFLLTVGPQAYLEIGKPNNGGTKIYS 249

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V  P   E  +   F  L+E   GG+RGG   L AVIPGGSS P +P   M    M
Sbjct: 250 VSGDVERPGNYEVPLGTPFAALLEL-AGGMRGG-RKLKAVIPGGSSAPVIPGEMMMQTDM 307

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV++
Sbjct: 308 DYDSIAKAGSMLGSGAVIVMDETRCMVRSLMRLSYFYHEESCGQCTPCREGTGWLYRVVK 367

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R+  G  +  ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 368 RIENGEGRVEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|329118904|ref|ZP_08247599.1| NADH-quinone oxidoreductase subunit F [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464932|gb|EGF11222.1| NADH-quinone oxidoreductase subunit F [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 431

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/394 (51%), Positives = 263/394 (66%), Gaps = 6/394 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L   + RG +  + KIL +   +D +I EVK SGLRGRGGAGF +G+KWSFMP+     
Sbjct: 22  TLDAYLQRGGYQALRKILSENTSQDDVIAEVKTSGLRGRGGAGFPSGLKWSFMPRSFPGE 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE EPGT KDRDI+ + PH LIEG +I  +A+GA   + Y+ GE     +  
Sbjct: 82  -KYVVCNTDEGEPGTFKDRDIILYNPHALIEGMIIGGYAMGAAAGYNYIHGEIFEGYQRF 140

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +  A+G LG N    G++ ++  HHG GAYICGEETALLESLEGKKGQPR KPPF
Sbjct: 141 EQALAQARAAGYLGQNILGSGFNFELYAHHGYGAYICGEETALLESLEGKKGQPRFKPPF 200

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GL+G PTT+NN E+ + VP I+R G   ++  G EN  GTKLFSISGHV  P   E
Sbjct: 201 PASFGLFGKPTTINNTETFSSVPFIIRDGGKTFADKGIENAGGTKLFSISGHVERPGNYE 260

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F EL+E   GG++ G   L AVIPGGSS P +P   M    MDYD + + GS L
Sbjct: 261 VPLGTPFAELLEM-AGGMKNG-KKLKAVIPGGSSSPVIPGDVMMTLNMDYDSIAKAGSML 318

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AVIVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V G  +  ++
Sbjct: 319 GSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIVHRIVNGQGKMEDL 378

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           DLL  V  N+ GRTICAL DAA +P++G +K++R
Sbjct: 379 DLLESVGNNMAGRTICALADAAVFPVRGFMKHYR 412


>gi|271962160|ref|YP_003336356.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
 gi|270505335|gb|ACZ83613.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
          Length = 428

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/384 (51%), Positives = 258/384 (67%), Gaps = 5/384 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G +    K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADE
Sbjct: 24  GDYSAARKALGMDPDAVIQAVKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVVNADE 82

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           SEPGTCKD  +M   PH+L+EG +I S+AI A+ AFIYVRGE +     LQAAV E Y  
Sbjct: 83  SEPGTCKDIPLMMANPHSLVEGIIITSYAIRANHAFIYVRGEVLHVIRRLQAAVAEAYDK 142

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           GLLG +    G+D++++VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA  GLY  P
Sbjct: 143 GLLGKDLFGSGFDLELVVHSGAGAYICGEETALLDSLEGYRGQPRLKPPFPAVAGLYASP 202

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T VNNVES+A VP+I+  GA W++G G E ++G  +FS+SGHV  P   E  + IT  EL
Sbjct: 203 TVVNNVESVASVPSIISNGAEWFAGMGTEKSKGFGIFSLSGHVTRPGQYEAPLGITLREL 262

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           ++   GGIR G   +    PGGSS P      +    +D++ +   GS LGT A+ + D 
Sbjct: 263 LDM-AGGIREG-HQIKFWTPGGSSTPIFTDEHLD-VPLDFESVGAKGSMLGTRALQIFDE 319

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           +T +++A+ R + FY HESCG+CTPCREGT W+ +V++RL KG   + ++  + +++ NI
Sbjct: 320 TTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLKQVLKRLEKGQGTEEDLTTITDIADNI 379

Query: 386 EGRTICALGDAAAWPIQGLIKNFR 409
            GR+ CALGD A  PI   +K FR
Sbjct: 380 LGRSFCALGDGATSPIHSSVKYFR 403


>gi|108760787|ref|YP_629345.1| NADH dehydrogenase I subunit F [Myxococcus xanthus DK 1622]
 gi|108464667|gb|ABF89852.1| NADH dehydrogenase I, F subunit [Myxococcus xanthus DK 1622]
          Length = 446

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/420 (49%), Positives = 275/420 (65%), Gaps = 16/420 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  +L     RG ++ + K L+     II+EVK S LRGRGGAGF TG+KWSF+PK  S 
Sbjct: 20  QSWTLDSYRKRGGYEALKKALQMEPAAIIDEVKKSNLRGRGGAGFPTGLKWSFVPKD-SP 78

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +P YL VN DESEPGT KDR I+  +PH ++EG  IAS+A+G H  ++Y+RGEF    E 
Sbjct: 79  KPKYLAVNGDESEPGTFKDRYILEDDPHMMLEGIAIASYALGVHTCYVYLRGEFKFPAER 138

Query: 136 LQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            QAA+DE Y +G+ G    LG  Y+++  +  GAGAYICGEETALLESLEGKKG PRLKP
Sbjct: 139 TQAAIDEAYKAGIFGKKV-LGKDYELNCYLVRGAGAYICGEETALLESLEGKKGWPRLKP 197

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA VGL+GCPT VNNVE++A VP I ++GA  Y+  G + + GT+L  +SG VN P  
Sbjct: 198 PFPAVVGLFGCPTVVNNVETLASVPAIFQQGAEAYAKLGTDKSGGTRLVCLSGTVNRPGV 257

Query: 254 VEESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
            E SM  T  ELI  +K+  G+  G   + AVIPGGSS P L A ++  A M+++ LK  
Sbjct: 258 YEVSMFTTLSELIFDDKYGRGMPAG-RKVKAVIPGGSSAPVLGADELDVA-MEFEALKVK 315

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
            +  G+  VIVMD +T +++++WR++ FY  ESCGQCTPCREGT W  R++ ++ +G  +
Sbjct: 316 QTMAGSGGVIVMDDTTCMVRSLWRVARFYAEESCGQCTPCREGTPWQTRLLRKIEEGRGE 375

Query: 372 KREIDLLYEVSKNIE-------GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
             +ID+L  V+ +I        G TICALGDAAA P    +  FR   E  I + HRC F
Sbjct: 376 PGDIDMLSNVASSIAPYPPIGLGNTICALGDAAALPTHSFLMRFRDEFEAHIRE-HRCPF 434


>gi|319950456|ref|ZP_08024370.1| hypothetical protein ES5_12775 [Dietzia cinnamea P4]
 gi|319435879|gb|EFV91085.1| hypothetical protein ES5_12775 [Dietzia cinnamea P4]
          Length = 466

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/401 (50%), Positives = 261/401 (65%), Gaps = 13/401 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK------- 71
           +L   +  G +  +   L    D +I+ V  SGLRGRGGAGF TG KW F+P+       
Sbjct: 18  TLQAYLDNGGYSGLRTALAAEPDEVISTVLDSGLRGRGGAGFPTGRKWGFIPQDTGADAA 77

Query: 72  --VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
               + RPHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI A  AFIY+RGE 
Sbjct: 78  DPSAAARPHYLVVNADESEPGTCKDMPLMLATPHVLIEGVIIAAYAIRASRAFIYLRGEV 137

Query: 130 IRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +     LQ AV E Y +G LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQ
Sbjct: 138 VPVLRRLQTAVAEAYEAGYLGRDILGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQ 197

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PRL+PPFPA  GLY CPT VNNVES+A VP+IL+ G  W+   G E + G  L+S+SGHV
Sbjct: 198 PRLRPPFPAVAGLYACPTVVNNVESLASVPSILQHGPEWFRSMGSEKSPGFTLYSLSGHV 257

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E  + IT  EL++   GGIR G   L    PGGSS P L   Q+    +DY+G 
Sbjct: 258 TRPGQYEAPLGITLRELLDL-AGGIRDG-HTLKFWTPGGSSTPLLTDAQL-DMPLDYEGC 314

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
              G+ LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++M RL  G
Sbjct: 315 AAEGTMLGTKALQIFDDTTCVVRAVLRWTEFYAHESCGKCTPCREGTFWLRQIMTRLEDG 374

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            A   E+D L ++S NI G++ CALGDAAA PI   I+ FR
Sbjct: 375 TATADELDRLLDISDNIVGKSFCALGDAAAAPIVSSIRLFR 415


>gi|320354158|ref|YP_004195497.1| NADH dehydrogenase subunit F [Desulfobulbus propionicus DSM 2032]
 gi|320122660|gb|ADW18206.1| NADH dehydrogenase subunit F [Desulfobulbus propionicus DSM 2032]
          Length = 423

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/393 (48%), Positives = 260/393 (66%), Gaps = 3/393 (0%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
            G +  +DK+     + +I  VKASGLRGRGGAGF TG+KWSF+PK   D+P YL VN+D
Sbjct: 24  HGAYATLDKVFAMQPEEVIELVKASGLRGRGGAGFPTGLKWSFLPKNI-DKPVYLAVNSD 82

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEP T KDR I+  +PH LIEG +I  +AI +H A+IY+RGE+  + ++LQAA+DE YA
Sbjct: 83  ESEPATFKDRYILVRDPHMLIEGIIICCYAIKSHAAYIYIRGEYTTQVKALQAAIDEAYA 142

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG   +   Y +D+ VH GAGAY+CGEETALLES+EG+KGQPR KPPFPA  GLYGC
Sbjct: 143 AGYLGDTIAGKDYKLDVTVHRGAGAYVCGEETALLESIEGRKGQPRSKPPFPAVEGLYGC 202

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNV+SIA +P IL  G+  Y  +G E + GT LF ISG V  P   E  + +   E
Sbjct: 203 PTIINNVQSIASLPFILANGSDAYKAYGTEKSPGTHLFGISGLVKKPGMYELPLGLPLLE 262

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           +I+K  GG+R G   L  VIPGGSS P L   + +   +DY+ +    +  G+  ++V+D
Sbjct: 263 VIDKVAGGVRDGR-KLKGVIPGGSSTPVLTPEEAQTVTLDYESMAAHKTMFGSGGIVVLD 321

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            + D++K +  L  FY HESCGQCTPCREG GWM+++++++++G     +IDLL E+  N
Sbjct: 322 DTVDMVKLVENLIYFYHHESCGQCTPCREGLGWMLKIVKKIIRGEGTIADIDLLTELCDN 381

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           IE +T+C L  A     +  +  FR   E  ++
Sbjct: 382 IEMKTVCVLSAACTMSTRSYLNKFRHEFEAYVN 414


>gi|296268278|ref|YP_003650910.1| NADH-quinone oxidoreductase subunit F [Thermobispora bispora DSM
           43833]
 gi|296091065|gb|ADG87017.1| NADH-quinone oxidoreductase, F subunit [Thermobispora bispora DSM
           43833]
          Length = 428

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/384 (52%), Positives = 255/384 (66%), Gaps = 5/384 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G +    K L    D II  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADE
Sbjct: 24  GDYSAARKALSMDPDTIIQMVKDSGLRGRGGAGFPTGMKWGFIPQ-NDGKPHYLVVNADE 82

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           SEPGTCKD  +M   PH LIEG +I S+AI A+ AFIYVRGE +     LQAAV E Y +
Sbjct: 83  SEPGTCKDIPLMMANPHALIEGAIITSYAIRANHAFIYVRGEVLHVIRRLQAAVREAYEA 142

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           G LG N    GYD++++VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA  GLY CP
Sbjct: 143 GYLGRNIFGSGYDLELVVHCGAGAYICGEETALLDSLEGRRGQPRLKPPFPAVAGLYACP 202

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T +NNVES+A VP+I+  G  W++  G E ++G  +FS+SGHV  P   E  + IT  EL
Sbjct: 203 TVINNVESVATVPSIVANGPEWFASMGTEKSKGFGIFSLSGHVARPGQYEAPLGITLREL 262

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           +E   GGIR G   L    PGGSS P      +    +D++ +   GS LGT A+ + D 
Sbjct: 263 LEM-AGGIRAG-HRLKFWTPGGSSTPIFTEEHLD-VPLDFESVAANGSMLGTRAIQIFDE 319

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ RL KG   + ++  + +++ NI
Sbjct: 320 TTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLKQVLYRLEKGQGTEEDLATITDIADNI 379

Query: 386 EGRTICALGDAAAWPIQGLIKNFR 409
            GR+ CALGD A   I   +K FR
Sbjct: 380 LGRSFCALGDGATSSIHSSVKLFR 403


>gi|332662318|ref|YP_004445106.1| NADH-quinone oxidoreductase subunit F [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331132|gb|AEE48233.1| NADH-quinone oxidoreductase, F subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 452

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/407 (50%), Positives = 268/407 (65%), Gaps = 22/407 (5%)

Query: 24  MSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
           +  G +  V+K L+K + D +  EVK SGLRGRGGAGF TGMKWSF+ K  +D+P YL+ 
Sbjct: 23  IKHGGYRAVEKALKKMQPDEVTEEVKKSGLRGRGGAGFPTGMKWSFIFK-GNDKPRYLLC 81

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           NADESEPGT KDR +M   PH LIEG + +SFA+G   A+IY+RGE++     LQ A+DE
Sbjct: 82  NADESEPGTFKDRLLMEKIPHLLIEGMIASSFALGVKTAYIYIRGEYMYILHILQKAIDE 141

Query: 143 CYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
            YA G LG N  LG  Y +D+ VH G GAYICGEETAL+ESLEGK+G PR+KPPFPA  G
Sbjct: 142 AYAKGYLGENI-LGTTYSLDLHVHPGGGAYICGEETALIESLEGKRGNPRIKPPFPAVEG 200

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           L+GCPT VNNVE+I  VP I+  G   Y+  G   + GTKL S  G++N P   E  + +
Sbjct: 201 LWGCPTIVNNVETICKVPFIINEGGETYANIGIGASTGTKLISACGNINKPGVYEIELGV 260

Query: 261 TFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLP--------AGQMRGAIMDYDGLKE 310
             +E I  +++CGGI+GG   L A++PGGSSVP LP         G+ R  +M Y+ L +
Sbjct: 261 PVEEFIYSDEYCGGIKGG-KQLKALVPGGSSVPILPNRLITKTAKGEPR--LMSYESLSD 317

Query: 311 ----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
                GS LG+   IV D    I++  W  S FY HESCGQC+PCREGTGWM +++ R+ 
Sbjct: 318 GGFPTGSMLGSGGFIVFDEDQCIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKILHRME 377

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
            G  +  +IDLL++V + IEG TIC  GDA+AWP+   I++FR   E
Sbjct: 378 YGHGRMEDIDLLWDVQRKIEGNTICPFGDASAWPVAAAIRHFRDEFE 424


>gi|78485167|ref|YP_391092.1| NADH-quinone oxidoreductase, F subunit [Thiomicrospira crunogena
           XCL-2]
 gi|78363453|gb|ABB41418.1| NADH dehydrogenase I chain F [Thiomicrospira crunogena XCL-2]
          Length = 426

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/382 (52%), Positives = 253/382 (66%), Gaps = 6/382 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+EVKAS +RGRGGAGF TG+KWSFM +     P Y+V N+DE EPGT KDRDI+R+ P
Sbjct: 45  IIDEVKASNIRGRGGAGFPTGLKWSFMNRAAPG-PKYIVCNSDEGEPGTFKDRDILRYNP 103

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +IA + IGA   + Y+RGEF    +  Q A+D+   +G LG N    GYD ++
Sbjct: 104 HALVEGMMIAGYVIGACAGYNYIRGEFWEPYQRFQGAIDQARKAGFLGKNILGSGYDFEL 163

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
             H GAGAYICGEETAL+ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E++A +P IL
Sbjct: 164 FTHLGAGAYICGEETALIESLEGKKGQPRFKPPFPASYGLYGKPTTINNTETLASIPMIL 223

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +G  W+   G  N  GTK +S+SGHVN P   E  M   F +L+E   GGI  G + L 
Sbjct: 224 AKGGDWFCDLGVPNAGGTKCYSVSGHVNNPGNFEVRMGTPFKDLLEL-AGGIWKGRE-LK 281

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVIPGG+S   LPA +     MDYD + + GS LG  +VI+MD  TDI+K +  LS FY 
Sbjct: 282 AVIPGGASTAILPAEKAMAMNMDYDSIAKAGSFLGAGSVIIMDDQTDIVKVMENLSHFYW 341

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCGQCTPCREGTGW+ RV++R+  G  +  +I+ L +VS  I GR IC LGDAA   +
Sbjct: 342 DESCGQCTPCREGTGWLYRVLKRIRSGKGRPEDIEALKDVSGKIMGRVICGLGDAATIGL 401

Query: 402 QGLIKNFRPLIEERIDQYHRCN 423
              ++++       ID  H C+
Sbjct: 402 TSALEHYEHEFRHYID--HGCS 421


>gi|71275685|ref|ZP_00651970.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Dixon]
 gi|71897859|ref|ZP_00680085.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1]
 gi|170729494|ref|YP_001774927.1| NADH dehydrogenase (quinone) [Xylella fastidiosa M12]
 gi|71163576|gb|EAO13293.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Dixon]
 gi|71732414|gb|EAO34468.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1]
 gi|167964287|gb|ACA11297.1| NADH dehydrogenase (quinone) [Xylella fastidiosa M12]
          Length = 444

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/405 (51%), Positives = 269/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I+T L+     S    +  G +  + KI E+    + +I+ VK S LRGRGGAGF TG+K
Sbjct: 21  IYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+  A+ Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E  + A+ + Y  G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G  W+    +  N G+K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L A IPGG S+P L A Q++G  M
Sbjct: 259 VSGCVQQGGNFEVPLGTTFDELLEM-AGGLRPG-RALKAAIPGGVSMPVLKAEQLQGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +GSGLG+  ++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|171463531|ref|YP_001797644.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193069|gb|ACB44030.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 432

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/403 (52%), Positives = 270/403 (66%), Gaps = 10/403 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D  SRG +  + +++      D +I E+KAS LRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWCLKDYESRGGYQQLRRLINDKVAPDVVIAELKASSLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDIMR+ PH LIEG +I ++ +G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDIMRYNPHALIEGMIIGAYTMGITVGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLESLEGK 185
           E        + A++E  A+G LG +  LG D    +H   G GAYICGEETALLESLEGK
Sbjct: 133 EIFEVYSRFEEALEEARAAGYLG-DKILGSDFSFQLHASPGWGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ GLYG PTT+NN E+ A VP IL  G   Y   G+ NN GTK+FSIS
Sbjct: 192 KGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFILAIGGQAYLDLGKLNNGGTKIFSIS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V +P   E  +   F EL+ K  GG+R G   L AVIPGGSS P +P  QM    MDY
Sbjct: 252 GDVVHPGNYEIPLGTPFAELL-KLAGGMRDG-KALKAVIPGGSSSPVVPGAQMMELTMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVM+ +  +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMNETRCMVRALERLSYFYHEESCGQCTPCREGTGWLWRIVHRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             G  +  ++DLL +V+ NI+GRTICALGDAAA P++G++K++
Sbjct: 370 EHGEGRPEDLDLLNDVAANIQGRTICALGDAAAMPVRGMLKHY 412


>gi|171058190|ref|YP_001790539.1| NADH-quinone oxidoreductase subunit F [Leptothrix cholodnii SP-6]
 gi|170775635|gb|ACB33774.1| NADH-quinone oxidoreductase, F subunit [Leptothrix cholodnii SP-6]
          Length = 452

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/426 (51%), Positives = 278/426 (65%), Gaps = 16/426 (3%)

Query: 5   QDR-IFTNLY-GLQGKS--LSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRG 54
            DR I + +Y GL GK+  L+D  +RG +  + KIL          D +I EVK SGLRG
Sbjct: 22  HDRHINSQIYAGLNGKNWRLADYEARGGYQALRKILGADGGEGMTADQVIAEVKGSGLRG 81

Query: 55  RGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114
           RGGAGF TG+KWSFMP+    +  YLV N+DE EPGTCKDRDI+R+ PH +IEG +IA++
Sbjct: 82  RGGAGFPTGLKWSFMPRALPVQ-KYLVCNSDEGEPGTCKDRDILRYNPHIVIEGMIIAAY 140

Query: 115 AIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYIC 172
           A+G    + Y+ GE     E  + A++E  A+G LG N  LG      +H  HG GAYIC
Sbjct: 141 AMGITVGYNYIHGEIFDAYERFEEALEEARAAGYLG-NQILGSRHTFQLHAFHGFGAYIC 199

Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232
           GEETALLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G
Sbjct: 200 GEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGPAYLECG 259

Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
           + NN GTK+FS+ G V  P   E  M   F  L+E   G   G    L AVIPGGSS P 
Sbjct: 260 KPNNGGTKIFSMVGDVERPGNYEIPMGTPFSTLLELAGGVKGG--KKLKAVIPGGSSSPV 317

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           LPA  M    MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY HESCGQCTPCR
Sbjct: 318 LPADVMMACTMDYDSISKAGSMLGSGAVIVMDDTRCMVKSLLRLSYFYSHESCGQCTPCR 377

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           EGTGW+ R+++R+  G  +  ++ LL  V++NI GRTICALGDAAA P++ ++K+FR   
Sbjct: 378 EGTGWLWRIVDRIEHGHGRAEDLALLDNVAENIMGRTICALGDAAAMPVRAMLKHFRHEF 437

Query: 413 EERIDQ 418
              I+ 
Sbjct: 438 VHHIEH 443


>gi|15836913|ref|NP_297601.1| NADH-ubiquinone oxidoreductase, NQO1 subunit [Xylella fastidiosa
           9a5c]
 gi|9105133|gb|AAF83121.1|AE003884_6 NADH-ubiquinone oxidoreductase, NQO1 subunit [Xylella fastidiosa
           9a5c]
          Length = 444

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/405 (51%), Positives = 268/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I+T L+     S    +  G +  + KI E+    + +I+ VK S LRGRGGAGF TG+K
Sbjct: 21  IYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+  A+ Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E  + A+ + Y  G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G  W+    +  N G+K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L A IPGG S+P L A Q+ G  M
Sbjct: 259 VSGCVQQGGNFEVPLGTTFDELLEM-AGGLRPG-RALKAAIPGGVSMPVLKAEQLHGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +GSGLG+  ++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|71897771|ref|ZP_00679997.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1]
 gi|71732326|gb|EAO34380.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1]
          Length = 444

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/405 (51%), Positives = 268/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I+T L+     S    +  G +  + KI E+    + +I+ VK S LRGRGGAGF TG+K
Sbjct: 21  IYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+  A+ Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E  + A+ + Y  G LG N    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G  W+    +  N G+K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L A IPGG S+P L A Q+ G  M
Sbjct: 259 VSGCVQQGGNFEVPLGTTFDELLEM-AGGLRPG-RALKAAIPGGVSMPVLKAEQLHGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +GSGLG+  ++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|116329149|ref|YP_798869.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330243|ref|YP_799961.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121893|gb|ABJ79936.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123932|gb|ABJ75203.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 444

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/393 (49%), Positives = 263/393 (66%), Gaps = 6/393 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D II EVK SGLRGRGGAGF TG+KWSF+PK  S +P Y++ NADE E
Sbjct: 28  YEGLKKALSMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDVS-KPKYIICNADEGE 86

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR ++ + PH +IEG +I + AIG++  F Y+RGEF +   ++QAA+DE Y+ G 
Sbjct: 87  PGTFKDRKLIENLPHQIIEGMIIGAKAIGSNKGFFYIRGEFQKGARTMQAAIDEAYSKGY 146

Query: 149 LGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N  LG  +D D+I++ GAGAYICGEETAL+ SLEG++G PRLKPPFPA  GLY  PT
Sbjct: 147 LGKNI-LGTDFDFDLILYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPT 205

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVE+ + +P IL +GA WYS  G E + GT+LFS+SGHV  P   E  +     EL+
Sbjct: 206 VVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVKRPGVYEIELGTPLLELV 265

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
              CGGI      L A+IPGGSSVP L A + + A MD++ +    + LG+ AVIV+   
Sbjct: 266 NDLCGGIVDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEG 324

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
            DI++  +R + FY HESCGQCTPCREGT W+  ++ ++ +G    ++IDL+  +S+N+E
Sbjct: 325 ADIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTQDIDLILSLSRNME 384

Query: 387 -GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            G TIC L DA    ++  I+ FR   + R+ +
Sbjct: 385 GGTTICPLSDACVGAVRPAIQKFRSEFDARLKE 417


>gi|269128608|ref|YP_003301978.1| NADH-quinone oxidoreductase subunit F [Thermomonospora curvata DSM
           43183]
 gi|268313566|gb|ACY99940.1| NADH-quinone oxidoreductase, F subunit [Thermomonospora curvata DSM
           43183]
          Length = 433

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/384 (51%), Positives = 255/384 (66%), Gaps = 5/384 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G +  + K L    D I+  VK SGLRGRGGAGF TGMKW F+P   S +P YLVVNADE
Sbjct: 28  GGYQAMRKALRMEPDAIVQAVKDSGLRGRGGAGFPTGMKWGFLPP-NSPKPRYLVVNADE 86

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           SEPGTCKD  +M   PH L+EG +I+++AI +H AFIYVRGE +     LQ AV E Y +
Sbjct: 87  SEPGTCKDIPLMMANPHVLVEGIIISAYAIRSHHAFIYVRGEVLHVIRRLQQAVAEAYQA 146

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           G LG +    GYD+D++VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA  GLYG P
Sbjct: 147 GYLGKDILGTGYDLDVVVHTGAGAYICGEETALLDSLEGYRGQPRLKPPFPAVAGLYGGP 206

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T +NNVESI+ VP+I+  G  W++  G E ++G  +FS+SGHV  P   E  + IT  EL
Sbjct: 207 TVINNVESISSVPSIVANGPDWFASMGTEKSKGFGIFSLSGHVTRPGQYEAPLGITLREL 266

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           +E   GG+R G D L    PGGSS P      M    +D++ +   GS LGT A+ + D 
Sbjct: 267 LEM-AGGMRKGRD-LKFWTPGGSSTPLFTKEHMD-VPLDFESVGAAGSMLGTRALQIFDE 323

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           +T +++A+ R S FY HESCG+CTPCREGT W  +++ RL  G   + +++ L ++S NI
Sbjct: 324 TTCVVRAVLRWSEFYAHESCGKCTPCREGTYWYKQMLRRLENGQGTEEDLETLLDLSDNI 383

Query: 386 EGRTICALGDAAAWPIQGLIKNFR 409
            GR+ CALGD A  P+   IK FR
Sbjct: 384 LGRSFCALGDGATSPVTSSIKLFR 407


>gi|153007185|ref|YP_001381510.1| NADH-quinone oxidoreductase subunit F [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030758|gb|ABS28526.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 441

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/408 (50%), Positives = 275/408 (67%), Gaps = 7/408 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L    + G +  +DK L      I++EVK S LRGRGGAGF+TG+KW+F+PK    RP 
Sbjct: 18  ALRTYRADGGYAALDKALGMEPAAIVDEVKRSNLRGRGGAGFATGLKWTFLPK--DIRPR 75

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL VNADESEPGT KDR I+ H+PH LIEG  I  +A+  H A++Y+RGEF R+   L+A
Sbjct: 76  YLTVNADESEPGTFKDRYIIEHDPHMLIEGIAITCYALDIHLAYVYIRGEFARQARILEA 135

Query: 139 AVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A++E  A+G+LG     K  +D+D+ VH GAGAYICGEE+ALLESLEGKKG PRLKPPFP
Sbjct: 136 AIEEARAAGILGQRLLGKKDFDLDVFVHRGAGAYICGEESALLESLEGKKGYPRLKPPFP 195

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT +NNVE+IA VP I+  G   ++G G   + GT+LF +SGHVN P   E+
Sbjct: 196 AVVGLWGKPTIINNVETIANVPWIVANGGDAFAGLGVGKSGGTRLFGVSGHVNRPGVFEK 255

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            +     +LI + CGGI GG   + AVIPGGSS P L   ++  + +++D +K  GS  G
Sbjct: 256 PVDYNLKKLIMEDCGGIPGG-RKVKAVIPGGSSSPVLRGDEIDIS-LEFDAVKAAGSMSG 313

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  VIV D ST +++A+ R+S FY  ESCGQCTPCREGT WM  ++E++  G     ++ 
Sbjct: 314 SGGVIVFDDSTCMVRALARISKFYAEESCGQCTPCREGTSWMEGIVEKIEHGHGTAADVA 373

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            L +++ NI G+TICALGDAA+ P+Q  +K FR      +++  RC F
Sbjct: 374 KLEQIAGNIGGQTICALGDAASMPVQSFVKKFRDEFLRHVEE-RRCPF 420


>gi|295798105|emb|CAX68924.1| NADH-quinone oxidoreductase F subunit (51 kDa) [uncultured
           bacterium]
          Length = 423

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/401 (47%), Positives = 267/401 (66%), Gaps = 5/401 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIIN-EVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           LS  +  G + +  K+L++ +   +  EVKAS LRG GGAGFSTG KWSF+P+  + +P 
Sbjct: 17  LSGFLREGGYKSAAKVLKEMKPADVEAEVKASNLRGLGGAGFSTGTKWSFVPR-NTGKPI 75

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADE EPGT KD+ I+   PH LIEG +IAS+A+G H AFIY+RGE+ ++ ++++ 
Sbjct: 76  YLVVNADEGEPGTFKDKYIIERVPHLLIEGIIIASYAVGIHKAFIYIRGEYEKQYQAIKE 135

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E Y    LG+    + + +DI++H GAGAYICGEET+LLESLEGKKG PRLKPPFPA
Sbjct: 136 ALREAYDHKFLGTQIFGMDFQLDIVLHRGAGAYICGEETSLLESLEGKKGYPRLKPPFPA 195

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+GCPT +NNVE+++ +P+I+ +GASW++  G E + G +LF +SGHV  P   E  
Sbjct: 196 IVGLFGCPTVINNVETLSYLPSIIEKGASWFAAMGTEKSGGMRLFGVSGHVVKPGVYELP 255

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +  T  E+I  H GGI  G   L AV+PGG S   +   ++  + MD+D LK  G+  G+
Sbjct: 256 IKTTLREIIYHHAGGIPNG-KKLKAVVPGGLSAAIMTPDEIDVS-MDFDALKAKGTMGGS 313

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             +IVMD +  +++A+     FY HESCGQC+PCREGTGW+ R++ R+V G  + ++ID 
Sbjct: 314 GGIIVMDETVSMVEALRITMQFYAHESCGQCSPCREGTGWIYRILNRIVAGKGKLQDIDN 373

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L ++   + G TICAL D A       +K FR   EE I  
Sbjct: 374 LLDIGAYLGGTTICALADGAQMTFLSYLKKFRSEFEEFIQN 414


>gi|119714789|ref|YP_921754.1| NADH-quinone oxidoreductase, F subunit [Nocardioides sp. JS614]
 gi|119535450|gb|ABL80067.1| NADH dehydrogenase subunit F [Nocardioides sp. JS614]
          Length = 440

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/407 (51%), Positives = 271/407 (66%), Gaps = 14/407 (3%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           DQ+R +T         L+   SRG +  VD       D +I+ VK SGLRGRGGAGF TG
Sbjct: 18  DQERSWT---------LAAYESRGGYRAVDTAFAMEPDAVIDAVKESGLRGRGGAGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKW F+P+  + RP YLVVNADESEPGTCKD  +M   PHTL+EG +I+S+AI A+ AFI
Sbjct: 69  MKWGFIPQ-DNPRPKYLVVNADESEPGTCKDIPLMMASPHTLVEGVIISSYAIRANKAFI 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE +     +Q AV E YA+G LG+N    G+D+D++VH GAGAYICGEETALLE L
Sbjct: 128 YIRGEVLHVIRRVQRAVQEAYAAGHLGTNIHGSGFDLDVVVHAGAGAYICGEETALLEGL 187

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++GQPRL+PPFPA  GLY  PT +NNVESI+ VP+I+ RG +W++  G E ++G  +F
Sbjct: 188 EGRRGQPRLRPPFPAVAGLYASPTVINNVESISSVPSIIGRGHAWFASMGTEKSKGVGIF 247

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+SGHV  P   E  + IT   LI+   GGIR G   L    PGGSS P L A  +    
Sbjct: 248 SLSGHVKRPGQYEAPLGITLRTLIDL-AGGIREG-HELKFWTPGGSSTPLLTAEHLD-VP 304

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D++G+   GS LGT A+ + D S  +++A+ R S FYKHESCG+CTPCREGT W+++V+
Sbjct: 305 LDFEGVGSAGSMLGTRALQIFDDSVCVVRAVLRWSEFYKHESCGKCTPCREGTWWLVQVL 364

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             L KG   + ++DLL +   NI GR+ CAL D A  PI   I+ FR
Sbjct: 365 TALEKGDGTEEDLDLLLDQCDNILGRSFCALADGATSPIVSSIQFFR 411


>gi|302523882|ref|ZP_07276224.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. AA4]
 gi|302432777|gb|EFL04593.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. AA4]
          Length = 427

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/377 (53%), Positives = 254/377 (67%), Gaps = 5/377 (1%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K L    + ++  VK SGLRGRGGAGF  G+KWSFMP    D+PHYLV+NADE EPGTCK
Sbjct: 35  KALAATPEQLVQVVKDSGLRGRGGAGFPAGVKWSFMPP-NEDKPHYLVINADEGEPGTCK 93

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152
           D  +M  +PH+LIEGC+IAS+A+ +H  FIYVRGE +     L AA  E YA G LG N 
Sbjct: 94  DIPLMMADPHSLIEGCIIASYAMRSHHCFIYVRGEALHCIRRLNAAAREAYAKGYLGKNI 153

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
              G+D+++ VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA  GLY  PTTVNNVE
Sbjct: 154 FGSGWDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPAAAGLYAAPTTVNNVE 213

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           +IA    I+  G+SW+   GRE + G K++SISGHV  P   E  +  T  EL+E   GG
Sbjct: 214 TIASASYIINAGSSWFREMGREKSPGPKIYSISGHVEKPGQYECPLGTTLRELLEL-AGG 272

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           ++ G   L    PGGSS P   A  +    +D++G  E GS LGT AV V + +  +  A
Sbjct: 273 MKDGIP-LKFWTPGGSSTPMFTAEHLD-VPLDFEGAAEAGSMLGTTAVQVFNETVSVPWA 330

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
           + + + FY+HESCG+CTPCREGT W+ +++ER+V+G   + +ID L +V  NI GR+ CA
Sbjct: 331 VMKWTQFYEHESCGKCTPCREGTYWLAQILERMVEGHGTEEDIDTLLDVCDNIFGRSFCA 390

Query: 393 LGDAAAWPIQGLIKNFR 409
           LGD A  PIQ  IK FR
Sbjct: 391 LGDGAVSPIQSGIKYFR 407


>gi|28198176|ref|NP_778490.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xylella fastidiosa
           Temecula1]
 gi|182680810|ref|YP_001828970.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa M23]
 gi|28056246|gb|AAO28139.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xylella fastidiosa
           Temecula1]
 gi|182630920|gb|ACB91696.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa M23]
 gi|307579278|gb|ADN63247.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 444

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/405 (51%), Positives = 269/405 (66%), Gaps = 8/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I+T L+     S    +  G +  + KI E+    + +I+ VK S LRGRGGAGF TG+K
Sbjct: 21  IYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPTGLK 80

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK    +  Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+  A+ Y+
Sbjct: 81  WSFMPKGTMQK--YILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAYNYL 138

Query: 126 RGEFIRER-ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           RGEF  E  E  + A+ + Y  G LG +    G D+DI    GAGAYICGEETAL+ESLE
Sbjct: 139 RGEFHHEPFEHFEQALADAYTHGWLGKSVLGSGVDIDIYAVLGAGAYICGEETALMESLE 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G  W+    +  N G+K+FS
Sbjct: 199 GKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSKIFS 258

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V      E  +  TFDEL+E   GG+R G   L A IPGG S+P L A Q++G  M
Sbjct: 259 VSGCVQQGGNFEVPLGTTFDELLEM-AGGLRPG-RALKAAIPGGVSMPVLKAEQLQGLQM 316

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L+ +GSGLG+  ++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM RV+E
Sbjct: 317 DYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHRVLE 376

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F
Sbjct: 377 RIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQF 421


>gi|269794078|ref|YP_003313533.1| NADH dehydrogenase subunit F [Sanguibacter keddieii DSM 10542]
 gi|269096263|gb|ACZ20699.1| NADH dehydrogenase subunit F [Sanguibacter keddieii DSM 10542]
          Length = 449

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/396 (50%), Positives = 255/396 (64%), Gaps = 5/396 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L   ++ G ++ +   L +    ++  VK SGLRGRGGAGF TGMKW F+P      P 
Sbjct: 20  TLETYLANGGYEGLRAALAQPAADVVQTVKDSGLRGRGGAGFPTGMKWGFLP-APDGGPR 78

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD  +M   P TL+EG  I S+AIG H AFIYVRGE +     L  
Sbjct: 79  YLVVNADESEPGTCKDIPLMLASPQTLVEGVAITSYAIGCHHAFIYVRGEVLHVYRRLLK 138

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV+E YA+G LG +    G+D+D+ VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA
Sbjct: 139 AVEEAYAAGYLGKDVLGSGFDLDVTVHAGAGAYICGEETALLDSLEGLRGQPRLKPPFPA 198

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLY  PT VNNVES+A VP I+ RGASW++  G E + G  LFS+SGHV +P   E  
Sbjct: 199 VAGLYARPTVVNNVESVASVPQIVARGASWFTSMGTERSAGHGLFSLSGHVTHPGQYEAP 258

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           + IT  EL++   GG+RGG   L    PGGSS P   A  +    +DY+ +   GS LGT
Sbjct: 259 LGITLRELLDM-AGGVRGG-RALKFWTPGGSSTPIFTAEHLD-VPLDYESVAAAGSMLGT 315

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ RL  G   + +ID 
Sbjct: 316 RALQIFDETTSVVRAVTRWTEFYAHESCGKCTPCREGTYWLKQVLRRLEAGQGTQGDIDT 375

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           L +   NI GR  CALGD A   I   ++ FR   E
Sbjct: 376 LLDTCDNILGRAFCALGDGATSCITSAVQYFREEFE 411


>gi|126434143|ref|YP_001069834.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. JLS]
 gi|126233943|gb|ABN97343.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. JLS]
          Length = 438

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/395 (51%), Positives = 266/395 (67%), Gaps = 7/395 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSD 75
           +L      G +  +++ L    D +I  +K SGLRGRGGAGF TG KWSF+P+     + 
Sbjct: 19  TLETYRRHGGYRALEQALATAPDDVITTIKDSGLRGRGGAGFPTGTKWSFIPQGDEGPAA 78

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLV+NADESEPGTCKD  ++   PH L+EG +IA++AI AH AFIYVRGE +     
Sbjct: 79  KPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRAHHAFIYVRGEVVPVLRR 138

Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQAAV E Y +G LG++ +  G+D+D+IVH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 139 LQAAVAEAYDAGYLGTDIRGSGFDLDLIVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 198

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL  G  W+   G E + G  L+S+SGHV  P   
Sbjct: 199 FPAVAGLYACPTVVNNVESIASVPPILLGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQY 258

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL+E + GG+R G   L    PGGSS P L  G+     +DY+G+  +GS 
Sbjct: 259 EAPLGITLRELLE-YAGGVRAG-HELKFWTPGGSSTPLL-TGEHLDVPLDYEGMASVGSM 315

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++  RL  G A + +
Sbjct: 316 LGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLESGDATEAD 375

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +D L ++S  I G++ CALGD AA PI   IK FR
Sbjct: 376 VDKLLDISDTILGKSFCALGDGAASPIISSIKYFR 410


>gi|256396787|ref|YP_003118351.1| NADH-quinone oxidoreductase, F subunit [Catenulispora acidiphila
           DSM 44928]
 gi|256363013|gb|ACU76510.1| NADH-quinone oxidoreductase, F subunit [Catenulispora acidiphila
           DSM 44928]
          Length = 441

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/409 (49%), Positives = 264/409 (64%), Gaps = 10/409 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L+    R  +  V + L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PH
Sbjct: 20  TLAGYQRRDGYTAVKQALRMHPDEVIQLVKDSGLRGRGGAGFPTGMKWGFIPQ-NDGKPH 78

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD   M   PH L+EG +IA +AI A  AFIYVRGE +     LQA
Sbjct: 79  YLVVNADESEPGTCKDIPFMMANPHELVEGVIIACYAIRASHAFIYVRGEVLHVLRRLQA 138

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV E Y +G LG       +D+++ VH GAGAYICGEETALL+SLEGK+GQPRL+PPFPA
Sbjct: 139 AVREAYDAGFLGKGVFGTDFDLELTVHAGAGAYICGEETALLDSLEGKRGQPRLRPPFPA 198

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLY  PT VNNVESI  VP I+R G  W+ G G E + G  L+S+SGHV +P   E  
Sbjct: 199 VAGLYASPTCVNNVESIGSVPAIVRNGVDWFKGMGSEKSPGFTLYSLSGHVKHPGQYEAP 258

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           + IT  EL++ + GG+R G   L    PGGSS P      +    +DY+G+   GS LGT
Sbjct: 259 LGITLRELLD-YAGGVRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGT 315

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A+ + D +T +++A  R + FY HESCG+CTPCREGT W++++++R+ KG   + ++  
Sbjct: 316 KALQIFDETTCVVRAALRWTEFYAHESCGKCTPCREGTYWLVQILKRMEKGEGTEDDLGK 375

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR--CNF 424
           L ++  NI G+  CALGD AA PIQ  +K FR   +E ++ + R  C F
Sbjct: 376 LLDLCDNIVGKAFCALGDGAAAPIQSSLKYFR---DEYLEHFERGGCPF 421


>gi|108798545|ref|YP_638742.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. MCS]
 gi|119867645|ref|YP_937597.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. KMS]
 gi|108768964|gb|ABG07686.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. MCS]
 gi|119693734|gb|ABL90807.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. KMS]
          Length = 438

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/395 (51%), Positives = 266/395 (67%), Gaps = 7/395 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSD 75
           +L      G +  +++ L    D +I  +K SGLRGRGGAGF TG KWSF+P+     + 
Sbjct: 19  TLETYRRHGGYRALEQALGTAPDDVITTIKDSGLRGRGGAGFPTGTKWSFIPQGDEGPAA 78

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLV+NADESEPGTCKD  ++   PH L+EG +IA++AI AH AFIYVRGE +     
Sbjct: 79  KPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRAHHAFIYVRGEVVPVLRR 138

Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQAAV E Y +G LG++ +  G+D+D+IVH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 139 LQAAVAEAYEAGYLGTDIRGSGFDLDLIVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 198

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL  G  W+   G E + G  L+S+SGHV  P   
Sbjct: 199 FPAVAGLYACPTVVNNVESIASVPPILLGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQY 258

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL+E + GG+R G   L    PGGSS P L  G+     +DY+G+  +GS 
Sbjct: 259 EAPLGITLRELLE-YAGGVRAG-HELKFWTPGGSSTPLL-TGEHLDVPLDYEGMASVGSM 315

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++  RL  G A + +
Sbjct: 316 LGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLESGEATEAD 375

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +D L ++S  I G++ CALGD AA PI   IK FR
Sbjct: 376 VDKLLDISDTILGKSFCALGDGAASPIISSIKYFR 410


>gi|240276236|gb|EER39748.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Ajellomyces
           capsulatus H143]
          Length = 282

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/254 (69%), Positives = 211/254 (83%)

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEET+L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W
Sbjct: 2   GAYICGEETSLIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKW 61

Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
           ++ FGRE N+GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGG
Sbjct: 62  FASFGRERNQGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGG 121

Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347
           SS P LP       +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQ
Sbjct: 122 SSTPILPKHICDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQ 181

Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           CTPCREG+ W M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++
Sbjct: 182 CTPCREGSKWTMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRH 241

Query: 408 FRPLIEERIDQYHR 421
           FRP +E RI +Y +
Sbjct: 242 FRPELEARIRKYEQ 255


>gi|145589229|ref|YP_001155826.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047635|gb|ABP34262.1| NADH dehydrogenase subunit F [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 432

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/403 (52%), Positives = 269/403 (66%), Gaps = 10/403 (2%)

Query: 12  LYGLQGKS--LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G +  L D  SRG +  +  ++      D II E+KAS LRGRGGAGF TG+KWS
Sbjct: 14  LAGLNGDNWRLKDYESRGGYQQLRHLINDKVAPDAIIAELKASSLRGRGGAGFPTGLKWS 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    +  YLV N+DE EPGT KDRDIMR+ PH LIEG +I ++ +G    + Y+ G
Sbjct: 74  FMPRQFPGQ-KYLVCNSDEGEPGTFKDRDIMRYNPHALIEGMIIGAYTMGITTGYNYIHG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLESLEGK 185
           E        + A++E  A+G LG +  LG +    +H   G GAYICGEETALLESLEGK
Sbjct: 133 EIWEVYSRFEEALEEARAAGYLG-DKILGSEFSFQLHASPGWGAYICGEETALLESLEGK 191

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ GLYG PTT+NN E+ A VP IL  G   Y   G+ NN GTK+FSIS
Sbjct: 192 KGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFILAIGGQAYLELGKPNNGGTKIFSIS 251

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V +P   E  +   F EL+ K  GG+R G   L AVIPGGSS P +P  QM    MDY
Sbjct: 252 GDVVHPGNYEIPLGTPFAELL-KLAGGMRDGIP-LKAVIPGGSSSPVVPGAQMMELTMDY 309

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVIVM+ +  +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R+
Sbjct: 310 DSIAKAGSMLGSGAVIVMNETRCMVRALERLSYFYHEESCGQCTPCREGTGWLWRIVHRI 369

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             G  +  ++DLL +V+ NI+GRTICALGDAAA P++G++K++
Sbjct: 370 EHGQGRPEDLDLLNDVAANIQGRTICALGDAAAMPVRGMLKHY 412


>gi|239929609|ref|ZP_04686562.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
 gi|291437933|ref|ZP_06577323.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
 gi|291340828|gb|EFE67784.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
          Length = 448

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/414 (49%), Positives = 267/414 (64%), Gaps = 14/414 (3%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           D+DR +T         L      G ++ + K L    D +I  VK SGLRGRGGAGF TG
Sbjct: 25  DEDRSWT---------LDVYRRHGGYEGLRKALAMSPDDVIAYVKDSGLRGRGGAGFPTG 75

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKW F+P+    +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFI
Sbjct: 76  MKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFI 134

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE +     L AAV E YA+GLLG N    G D+++ VH GAGAYICGEETALL+SL
Sbjct: 135 YLRGEVVPVLRRLHAAVREAYAAGLLGENVLGSGLDLELTVHAGAGAYICGEETALLDSL 194

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++GQPRL+PPFPA  GLY CPT VNNVESIA VP+IL RG  W+   G E + G  L+
Sbjct: 195 EGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPSILHRGKEWFRSMGSEKSPGFTLY 254

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+SGHV  P   E  + IT  +L+E   GG+R G   L    PGGSS P     +     
Sbjct: 255 SLSGHVANPGQYEAPLGITLRQLLEM-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVP 311

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DY+G+   GS LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++
Sbjct: 312 LDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLL 371

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +  G  +  ++D L +++ NI G++ CALGD AA PI   +K FR   E+ I
Sbjct: 372 RDIEAGKGRMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHI 425


>gi|149280565|ref|ZP_01886681.1| NADH dehydrogenase I chain F [Pedobacter sp. BAL39]
 gi|149228680|gb|EDM34083.1| NADH dehydrogenase I chain F [Pedobacter sp. BAL39]
          Length = 453

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/409 (50%), Positives = 263/409 (64%), Gaps = 20/409 (4%)

Query: 26  RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           +G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+ K     P YLV NA
Sbjct: 24  KGGYRAVEKALKTLTPDEVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLVCNA 82

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE + +   L+ A+ E  
Sbjct: 83  DESEPGTFKDRYLMTHIPHALIEGMIVSSFALGANTSYIYVRGEMMPQIRILERAIAEAK 142

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            +G LG N    GYD+++ V  G GAYICGEETALLESLEGK+G PR+KPPFPA  GLYG
Sbjct: 143 QAGFLGKNILGTGYDLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAIAGLYG 202

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
           CPT VNNVESIA    I+  G   Y+  G   + GTKL S SG++  P   E  + +  +
Sbjct: 203 CPTVVNNVESIAATVPIINDGGEEYAKIGIGRSTGTKLISASGNLVRPGVYEIELGLPVE 262

Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE--- 310
           E I  +++CGGI  G   L A + GGSSVP LPA        G  R  +M Y+ L E   
Sbjct: 263 EFIYSDEYCGGIANG-KRLKATVAGGSSVPVLPANLTLKLANGDPR--LMSYESLSEGGF 319

Query: 311 -MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
             G+ +G+   I  D    I++  W  + FY HESCGQC+PCREGTGWM +V+ R+  G 
Sbjct: 320 ATGTMMGSGGFIAFDEDQCIVRNTWNFARFYHHESCGQCSPCREGTGWMEKVLHRIEYGH 379

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  +IDLL +VSKNIEG TIC LGDAAAWP+   I++FR   E  + +
Sbjct: 380 GKMSDIDLLVDVSKNIEGNTICPLGDAAAWPVASAIRHFRDEFEWHVKE 428


>gi|225871980|ref|YP_002753434.1| NADH dehydrogenase I, F subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225792115|gb|ACO32205.1| NADH dehydrogenase I, F subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 437

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/390 (51%), Positives = 260/390 (66%), Gaps = 4/390 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           + +V K LE   D IINE+K SGLRGRGGAGF TGMKWSF+PK  S +P Y++VN DESE
Sbjct: 34  YSSVRKCLEMEPDAIINEMKTSGLRGRGGAGFPTGMKWSFVPKQ-SAKPKYVLVNGDESE 92

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKDR I  H+PH++IEG +IA  AIGA   FIY+RGE+    + ++ AV   YA G 
Sbjct: 93  PGTCKDRLIFEHDPHSVIEGTMIAGLAIGAKMGFIYLRGEYRYLIQIMEKAVAAAYAKGF 152

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG       +D D++V  GAGAY  GEE+AL+ESLEGK+G PR+KPPFPA VGLYG PT 
Sbjct: 153 LGKGIFGSQHDFDVVVQTGAGAYEVGEESALMESLEGKRGVPRIKPPFPAVVGLYGGPTV 212

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           +NN E++A VP I R GA+ Y+ +G E N GT+LF ISGHV  P   E  M     ++I 
Sbjct: 213 INNAETLASVPHIFRIGAAEYAKYGTERNGGTRLFCISGHVEKPGVYELPMGYNLKKMIY 272

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
           +  GGI GG   L AV+PGGSSVP L   ++    MD+D + + GS LG+  V+V+D S 
Sbjct: 273 EVAGGILGG-KKLKAVVPGGSSVPVLLPDEIDIG-MDFDQVAKAGSMLGSGGVVVLDESV 330

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++   R   FY+HESCG C PCREGT W+ + + RL  G A  ++I+ +  +++N+ G
Sbjct: 331 CMVEFALRTIKFYRHESCGWCIPCREGTDWLQKSITRLHMGGAVDKDINNIQYIAENMLG 390

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RT C LGDAAA P  G +K FR   E+ ++
Sbjct: 391 RTFCPLGDAAAMPTIGFVKKFRKEFEDHLN 420


>gi|255533958|ref|YP_003094330.1| NADH-quinone oxidoreductase subunit F [Pedobacter heparinus DSM
           2366]
 gi|255346942|gb|ACU06268.1| NADH-quinone oxidoreductase, F subunit [Pedobacter heparinus DSM
           2366]
          Length = 454

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/413 (50%), Positives = 265/413 (64%), Gaps = 20/413 (4%)

Query: 26  RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           +G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+ K     P YLV NA
Sbjct: 24  KGGYRAVEKALKTLTPDDVVEEVKKSGLRGRGGAGFPTGMKWSFLAKP-DGVPRYLVCNA 82

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE + +   L+ A+ E  
Sbjct: 83  DESEPGTFKDRYLMTHIPHALIEGMIVSSFALGANTSYIYVRGEMMPQIRILEKAIAEAK 142

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            +G LG N    GYD+++ V  G GAYICGEETALLESLEGK+G PR+KPPFPA  GLYG
Sbjct: 143 NAGFLGKNILGSGYDLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAIAGLYG 202

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
           CPT VNNVESIA V  I+  G   Y+  G   + GTKL S SG++  P   E  + +  +
Sbjct: 203 CPTVVNNVESIAAVVPIVNDGGEEYAKIGIGRSTGTKLISASGNLVRPGVYEIELGLPVE 262

Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE--- 310
           E I  ++ CGGI  G   L A + GGSSVP LPA        G+ R  +M Y+ L E   
Sbjct: 263 EFIYSDEWCGGIANG-KRLKATVAGGSSVPVLPANLTLKLANGEPR--LMSYESLSEGGF 319

Query: 311 -MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
             G+ +G+   I  D    I++  W  S FY HESCGQC+PCREGTGWM +V+ RL  G 
Sbjct: 320 ATGTMMGSGGFIAFDEDQCIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKVLHRLEYGH 379

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +  +IDLL +VSK IEG TIC LGDAAAWP+   I++FR   E  + +  +C
Sbjct: 380 GKMSDIDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFEWHVKEPVKC 432


>gi|183220691|ref|YP_001838687.1| NADH-quinone oxidoreductase subunit F [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910792|ref|YP_001962347.1| NADH dehydrogenase subunit F [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775468|gb|ABZ93769.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779113|gb|ABZ97411.1| NADH-quinone oxidoreductase, chain F [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 423

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/414 (46%), Positives = 266/414 (64%), Gaps = 6/414 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T++      +L    S G ++++ K L E   + I+N+VK SGLRGRGGAGF TG KW
Sbjct: 7   LTTHIDASDSHTLKHYQSVGGYESLKKALSEMTAEQIVNDVKNSGLRGRGGAGFPTGNKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F+PK  +D+P YL+ N DE EPGT KDR ++   PH LIEG  IA+ AI +H  +IY+R
Sbjct: 67  GFIPK--TDKPKYLICNGDEGEPGTFKDRMLIERFPHMLIEGMAIAAKAIDSHQGYIYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF +    ++ AV+E Y +GLLG N   LGYD D+ V+ GAGAYICGEE+AL+ SLEG+
Sbjct: 125 GEFHKGIRIVETAVEEAYKAGLLGKNIFGLGYDFDLAVYSGAGAYICGEESALINSLEGR 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PRLKPPFPA  GLY CPT VNNVE+   VP I+R     Y   G E + GT+LF++S
Sbjct: 185 RGHPRLKPPFPAVSGLYACPTVVNNVETFCNVPHIIRMTGEEYKKIGTEKSPGTRLFAVS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M     ELI   CGGI+   D L AVIPGGSS P L   +   A MDY
Sbjct: 245 GHVKKPGIYEVEMGTPMKELIFDICGGIKNDKD-LKAVIPGGSSSPILTKDEAMTATMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +  + S LG+ AVI++    D+++  +RL+ FY HESCGQCTPCREGT W+  ++ ++
Sbjct: 304 ESIASLKSMLGSGAVIILSEEADLVETTYRLAEFYSHESCGQCTPCREGTHWVKDLLHKI 363

Query: 366 VKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            KG   +++++L++ +S+N+E G TIC L DA    ++  +  F+     R+ +
Sbjct: 364 KKGEGTEKDVELIFSLSRNMEGGTTICPLADACVMAVRPTMTKFKEEFSLRLKK 417


>gi|66219967|gb|AAY43000.1| Nqo1 [Rhodothermus marinus]
          Length = 443

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/399 (49%), Positives = 263/399 (65%), Gaps = 12/399 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           ++L + ++   WD            +I EVK S LRGRGGAGF TG+KWSFMP V  DRP
Sbjct: 40  QTLREVLTSDRWDPKS---------VIEEVKKSKLRGRGGAGFPTGLKWSFMPPV-DDRP 89

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            +L  N DESEPGT KDR +M   PH + EG +IA +A+     ++YVRGEF R  E ++
Sbjct: 90  RFLCCNGDESEPGTFKDRQLMEFNPHQIFEGILIACYAMSVRTCYLYVRGEFARWIEHME 149

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
             +++ YA G +G N     +  DI++H GAGAYICGEE++L+ES+EGK+  PR+KPPFP
Sbjct: 150 RELEKLYAKGYVGKNIMGTDFSADIVIHKGAGAYICGEESSLMESVEGKRAYPRIKPPFP 209

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PTT+NNVE++A VP ILR G  W++  G  N+ G  L+ ISGHVN P   E 
Sbjct: 210 AQRGLWGYPTTINNVETLANVPLILRNGGEWFASIGAPNHPGPVLYGISGHVNRPGVYEY 269

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              +   +LI +  GGIRGG   L AVIPGGSS P L A  + G  MD + L+E GS +G
Sbjct: 270 PTGMLITDLIYEVAGGIRGG-KKLKAVIPGGSSTPPLRADMIDGVTMDAESLREAGSMMG 328

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           TA ++V+D  TD++  + R++ FY HESCGQCTPCREGTGW+  ++ R+ +G  + R++D
Sbjct: 329 TAGLLVLDEDTDMVSWLRRVAHFYAHESCGQCTPCREGTGWLENILTRIEEGEGRLRDLD 388

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           LL ++   +EGRT+CAL DAAAWP++  I  FR   E R
Sbjct: 389 LLLDLCDQMEGRTVCALADAAAWPVRYTILRFREEFEAR 427


>gi|240169665|ref|ZP_04748324.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone
           oxidoreductase chain F) [Mycobacterium kansasii ATCC
           12478]
          Length = 443

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/380 (53%), Positives = 259/380 (68%), Gaps = 7/380 (1%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP---KVCSDRPHYLVVNADESEPG 90
           K L    D +I  VK SGLRGRGGAGF+TG KWSF+P   K  + +PHYLVVNADESEPG
Sbjct: 39  KALSMDPDAVIGTVKDSGLRGRGGAGFATGTKWSFIPQGDKGAAAKPHYLVVNADESEPG 98

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TCKD  +M   PH L+EG +IA++AI AH AFIYVRGE +     LQ AV E YA+G LG
Sbjct: 99  TCKDIPLMLATPHVLVEGIIIAAYAIRAHHAFIYVRGEVLPVLRRLQNAVAEAYAAGYLG 158

Query: 151 SN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
            N +  G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLYGCPT +N
Sbjct: 159 RNIAGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVIN 218

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE+IA VP I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  EL++ +
Sbjct: 219 NVETIASVPAIILHGVDWFRSMGTEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-Y 277

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
            GG+R G   L    PGGSS P L    +    +DY+G+  +GS LGT A+ + D +T +
Sbjct: 278 AGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGAVGSMLGTKALEIFDETTCV 335

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           ++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G     +ID L ++S +I G+ 
Sbjct: 336 VRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGTHEDIDKLLDISDSILGKA 395

Query: 390 ICALGDAAAWPIQGLIKNFR 409
            CALGD AA P+   I  FR
Sbjct: 396 FCALGDGAASPVMSSINYFR 415


>gi|325105662|ref|YP_004275316.1| NADH dehydrogenase subunit F [Pedobacter saltans DSM 12145]
 gi|324974510|gb|ADY53494.1| NADH dehydrogenase subunit F [Pedobacter saltans DSM 12145]
          Length = 454

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/408 (49%), Positives = 265/408 (64%), Gaps = 18/408 (4%)

Query: 26  RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           +G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+ K     P YLV N 
Sbjct: 24  KGGYRAVEKALKTMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLVCNG 82

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE + +   L+ A+ E  
Sbjct: 83  DESEPGTFKDRFLMTHIPHALIEGMIVSSFALGANTSYIYVRGEMMPQIRILEKAIAEAK 142

Query: 145 ASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
            +G LG N  LG  +D+++ V  G GAYICGEETALLESLEGK+G PR+KPPFPA  GLY
Sbjct: 143 EAGYLGKNI-LGSDFDLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAIAGLY 201

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
            CPT VNNVESIA    I+  G   Y+  G   + GTKL S SG++N P   E  + ++ 
Sbjct: 202 NCPTVVNNVESIAATVPIINDGGEEYAKIGIGRSTGTKLISASGNINKPGVYEIELGVSV 261

Query: 263 DELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE---- 310
           ++ I  +++CGGI  G   L AV+ GGSSVP LPA  +   +      M Y+ L +    
Sbjct: 262 EDFIYSDEYCGGIANG-KRLKAVVAGGSSVPILPANLILNLVNGDKRLMTYESLSDGGFA 320

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            G+ LG+   IVMD    +++  W  S FY HESCGQC+PCREGTGWM +++ ++  G  
Sbjct: 321 TGTMLGSGGFIVMDEDQCVVRNTWNFSRFYNHESCGQCSPCREGTGWMTKILHKIETGKG 380

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
              +IDLL +VSK IEG TIC LGDAAAWP+   +++FR   E  I++
Sbjct: 381 SYSDIDLLVDVSKQIEGNTICPLGDAAAWPVASAVRHFRDEFEWHINE 428


>gi|268317708|ref|YP_003291427.1| NADH-quinone oxidoreductase, F subunit [Rhodothermus marinus DSM
           4252]
 gi|262335242|gb|ACY49039.1| NADH-quinone oxidoreductase, F subunit [Rhodothermus marinus DSM
           4252]
          Length = 443

 Score =  381 bits (979), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/399 (49%), Positives = 263/399 (65%), Gaps = 12/399 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           ++L + ++   WD            +I EVK S LRGRGGAGF TG+KWSFMP V  DRP
Sbjct: 40  QTLREVLTSDRWDPKS---------VIEEVKKSKLRGRGGAGFPTGLKWSFMPPV-DDRP 89

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            +L  N DESEPGT KDR +M   PH + EG +IA +A+     ++YVRGEF R  E ++
Sbjct: 90  RFLCCNGDESEPGTFKDRQLMEFNPHQIFEGILIACYAMSVRTCYLYVRGEFARWIEHME 149

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
             +++ YA G +G N     +  DI++H GAGAYICGEE++L+ES+EGK+  PR+KPPFP
Sbjct: 150 RELEKLYAKGYVGKNIMGTDFSADIVIHKGAGAYICGEESSLMESVEGKRAYPRIKPPFP 209

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PTT+NNVE++A VP ILR G  W++  G  N+ G  L+ ISGHVN P   E 
Sbjct: 210 AQRGLWGYPTTINNVETLANVPLILRNGGEWFASIGAPNHPGPVLYGISGHVNRPGVYEY 269

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              +   +LI +  GGIRGG   L AVIPGGSS P L A  + G  MD + L+E GS +G
Sbjct: 270 PTGMLITDLIYEVAGGIRGG-KKLKAVIPGGSSTPPLRADMIDGVTMDAESLREAGSMMG 328

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           TA ++V+D  TD++  + R++ FY HESCGQCTPCREGTGW+  ++ R+ +G  + R++D
Sbjct: 329 TAGLLVLDEDTDMVSWLRRVAHFYAHESCGQCTPCREGTGWLENILTRIDEGEGRLRDLD 388

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           LL ++   +EGRT+CAL DAAAWP++  I  FR   E R
Sbjct: 389 LLLDLCDQMEGRTVCALADAAAWPVRYTILRFREEFEAR 427


>gi|255535800|ref|YP_003096171.1| NADH-ubiquinone oxidoreductase chain F [Flavobacteriaceae bacterium
           3519-10]
 gi|255341996|gb|ACU08109.1| NADH-ubiquinone oxidoreductase chain F [Flavobacteriaceae bacterium
           3519-10]
          Length = 467

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/423 (50%), Positives = 275/423 (65%), Gaps = 16/423 (3%)

Query: 15  LQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           ++G    D   R G +D VDK L+   D I+ EVK SGLRGRGGAGF TGMKWSF+ K  
Sbjct: 28  IEGIRFYDVYRRQGGYDAVDKALKMTPDVIVEEVKTSGLRGRGGAGFPTGMKWSFLAKP- 86

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
              P YLVVNADESEPGT KDR +M   PH LIEG +I+S+A+GA+ A+IY+RGE+    
Sbjct: 87  EGVPRYLVVNADESEPGTFKDRYLMEFLPHLLIEGMIISSYALGANTAYIYIRGEYSWIP 146

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           + L+ A++E  A+G LG N    GYD++I VH GAGAYICGEETALLESLEGK+G PRLK
Sbjct: 147 DILEQAINEAKAAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESLEGKRGNPRLK 206

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GL+  PT VNNVE+IA V  I+  G + Y+  G   + GTKL S  G++N P 
Sbjct: 207 PPFPAVKGLWESPTVVNNVETIAAVVPIMNIGGAEYAKIGVGRSTGTKLISACGNINKPG 266

Query: 253 TVEESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MD 304
             E  M+IT +E I  +++CGGI  G   L A IPGGSSVP +PA  +   I      M+
Sbjct: 267 VYEIDMTITVEEFIYSDEYCGGIPNG-KKLKACIPGGSSVPIVPANLLLKTINGEPRYMN 325

Query: 305 YDGLKE----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           Y+ L +     G+ +G+   IV+D    ++K    L+ FY HESCGQCTPCREGT WM R
Sbjct: 326 YESLADGGFATGTMMGSGGFIVLDEDQCVVKHTMSLAHFYAHESCGQCTPCREGTPWMYR 385

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++ +  G     +IDLL+++ + IEG TIC LGDAAAWP+   I++FR   E  ID   
Sbjct: 386 ILKNIETGKGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHIDNPE 445

Query: 421 RCN 423
             N
Sbjct: 446 ALN 448


>gi|328884317|emb|CCA57556.1| NADH-ubiquinone oxidoreductase chain F [Streptomyces venezuelae
           ATCC 10712]
          Length = 449

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/389 (50%), Positives = 255/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 41  YQGLRKALAMSPDALIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 99

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG +IA +AI +  AFIY+RGE +     L  AV E YA+G 
Sbjct: 100 PGTCKDIPLLYANPHSLIEGMIIACYAIRSEHAFIYLRGEVVPVLRRLHEAVREAYAAGY 159

Query: 149 LGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G +VDI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 160 LGRNVLGSGLNVDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 219

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL RG  W++  G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 220 VNNVESIASVPAILNRGKEWFTSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 279

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P     +     +DY+G+   GS LGT A+   D +T
Sbjct: 280 M-SGGMRAG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 336

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++D L +++ NI G
Sbjct: 337 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRSIENGTGTLADLDKLNDIADNING 396

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ I
Sbjct: 397 KSFCALGDGAASPIFSSLKYFREEYEQHI 425


>gi|256831784|ref|YP_003160511.1| NADH-quinone oxidoreductase, F subunit [Jonesia denitrificans DSM
           20603]
 gi|256685315|gb|ACV08208.1| NADH-quinone oxidoreductase, F subunit [Jonesia denitrificans DSM
           20603]
          Length = 448

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/399 (51%), Positives = 253/399 (63%), Gaps = 5/399 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  ++   +  G ++ + K L      I+ EVK SGLRGRGGAGF TGMKW F+P     
Sbjct: 18  QSWTMDTYLDHGGYEGLKKALTMDPAAIVQEVKDSGLRGRGGAGFPTGMKWGFLPP-DDG 76

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YLVVNADESEPGTCKD  +M   P  LIEG +I SFAIG   AFIYVRGE +     
Sbjct: 77  GPRYLVVNADESEPGTCKDIPLMMATPQFLIEGVIITSFAIGCRHAFIYVRGEVVHVYRR 136

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV+E Y  G LG N    GY +D+ VH GAGAYICGEETALL+SLEG++GQPRLKPP
Sbjct: 137 LLKAVEEAYDRGFLGDNILGSGYSLDVTVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 196

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVES+A VP I+ RGASW++  G E + G  LFS+SGHV  P   
Sbjct: 197 FPAVAGLYARPTVVNNVESVASVPQIIARGASWFTSLGTEKSAGHGLFSLSGHVERPGQY 256

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL++   GGIRGG   L    PGGSS P   A  +    +DY+ +   GS 
Sbjct: 257 EAPLGITLRELLDM-AGGIRGG-RQLKFWTPGGSSTPIFTADHLD-TPLDYESVGAAGSM 313

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ R+  G   + +
Sbjct: 314 LGTRALQIFDDTTSVVRAVTRWTEFYAHESCGKCTPCREGTYWLKQVLRRIEAGQGTQGD 373

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I+ L ++  NI GR  CALGD A   I   I+ FR   E
Sbjct: 374 IEKLLDLCDNILGRAFCALGDGATSCITSAIQYFRDEFE 412


>gi|116619257|ref|YP_821413.1| NADH-quinone oxidoreductase subunit F [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222419|gb|ABJ81128.1| NADH-quinone oxidoreductase, F subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 437

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/414 (45%), Positives = 264/414 (63%), Gaps = 4/414 (0%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           + R+ T  +G     ++   ++   +    K  +   + II EVK S LRGRGGAGF TG
Sbjct: 10  ETRVLTRRFGKPNSAAIEGYLADDGYQGFLKAAKMKPEEIIEEVKVSNLRGRGGAGFPTG 69

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+P+  S +P Y+VVN DESEPGTCKDR ++ ++PH LIEG +IA  ++ AH  ++
Sbjct: 70  MKWSFVPRT-SPKPKYIVVNGDESEPGTCKDRVLIENDPHQLIEGVLIAGLSVDAHAGYV 128

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE+    + ++ A+ E YA G LG N +  G+D D+  H GAGAY CGEE+ALLESL
Sbjct: 129 YIRGEYRYLIDIMEKAIAEAYAKGWLGKNIQGTGFDFDLYAHTGAGAYECGEESALLESL 188

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G PR++PPFPA  G + CPT +NNVE+   VP ILR G + ++  G     GTK+ 
Sbjct: 189 EGKRGIPRIRPPFPAVAGAFQCPTILNNVETFCAVPAILRDGGAAFAALGIPKAGGTKMT 248

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            ++GHVN P   E  +     ++IE+  GG+R G   L A IPGGSS P L A ++ GA 
Sbjct: 249 CLTGHVNKPGVYELKLGFPVKQMIEEVGGGMRNG-KKLKAFIPGGSSCPVLTAAELEGAT 307

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MDYD +    S LG+  VI+MD  T ++KA  R+  FY HESCG C PCREGT W+ +++
Sbjct: 308 MDYDSMASRKSMLGSGGVIIMDEDTCMVKAALRIMRFYAHESCGWCIPCREGTTWLKKIL 367

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            R   G   + +I+L+ +++KN+ GRT C LGDAAA P   +++ FR   E+ +
Sbjct: 368 TRFHDGQGTRTDINLIGDIAKNMLGRTFCPLGDAAAMPTISIVEKFREEFEDHL 421


>gi|120402878|ref|YP_952707.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955696|gb|ABM12701.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium vanbaalenii
           PYR-1]
          Length = 441

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/414 (51%), Positives = 275/414 (66%), Gaps = 8/414 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72
           Q  SL      G +  +D+ L    D +I  VK SGLRGRGGAGF TG KWSF+P+    
Sbjct: 16  QPWSLDTYRRHGGYQALDRALAMTPDQVITTVKDSGLRGRGGAGFPTGTKWSFIPQGDEG 75

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            + +PHYLV+NADESEPGTCKD  +M   PH L+EG +IA++AI AH AFIY+RGE +  
Sbjct: 76  PAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRAHHAFIYLRGEVVPV 135

Query: 133 RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQAAV E YA+G LGS+    G+D+++IVH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 136 LRRLQAAVAEAYAAGHLGSDIHGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRL 195

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLY CPT VNNVESIA VP +L  G  W+   G E + G  L+S+SGHV  P
Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPVLLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+E + GG+R G   L    PGGSS P L A  +    +DY+G+  +
Sbjct: 256 GQYEAPLGITLRELLE-YAGGVRAG-HELKFWTPGGSSTPLLTAEHLD-VPLDYEGMAGV 312

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 313 GSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGAGT 372

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR-CNF 424
           + ++D L ++S NI G++ CALGD AA PI   +K+FR   E  +D   + C F
Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRAEYEAHLDPVGKGCPF 426


>gi|297201628|ref|ZP_06919025.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC
           29083]
 gi|297147935|gb|EDY55035.2| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC
           29083]
          Length = 449

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/389 (51%), Positives = 257/389 (66%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 42  YEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 100

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG +IA +AI +  AFIY+RGE +     L +AV E YA+G 
Sbjct: 101 PGTCKDIPLLFANPHSLIEGMIIACYAIRSSHAFIYLRGEVVPVLRRLHSAVSEAYAAGY 160

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 161 LGQNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 220

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL+RG  W+   G E + G  L+S+SGHV  P   E  + IT  +L+E
Sbjct: 221 VNNVESIASVPAILQRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLE 280

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 337

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++D L +++ NI G
Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDLDKLNDIADNING 397

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ I
Sbjct: 398 KSFCALGDGAASPIFSSLKYFREEYEQHI 426


>gi|297565709|ref|YP_003684681.1| NADH-quinone oxidoreductase subunit F [Meiothermus silvanus DSM
           9946]
 gi|296850158|gb|ADH63173.1| NADH-quinone oxidoreductase, F subunit [Meiothermus silvanus DSM
           9946]
          Length = 444

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/403 (48%), Positives = 262/403 (65%), Gaps = 7/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L   +S G ++ V K L    + ++ EVK SGLRGRGGAGF TG+KWSFMPK  S + H
Sbjct: 34  TLEYYLSHGGYNAVKKALAMTPEQVVEEVKRSGLRGRGGAGFPTGLKWSFMPKP-SGKQH 92

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADESEPG+ KDR +M  +PH LIEG +IA +AI A   +IY+RGE+ R  + L+ 
Sbjct: 93  YIVCNADESEPGSFKDRYLMEDDPHQLIEGMIIAGYAIHATKGYIYIRGEYRRAYDRLKG 152

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E YA G LG N    G+  D+ VH GAGAYICGEETAL+ SLEG +  PRLKPPFPA
Sbjct: 153 AIQEAYARGYLGQNLFGTGFSFDLYVHRGAGAYICGEETALMNSLEGLRANPRLKPPFPA 212

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PTT+NNVES+     I+ RGA W++  G E ++G KL+ +SG    P   E  
Sbjct: 213 QAGLWGKPTTINNVESLCSAVHIIDRGADWFASMGTEKSKGHKLYQVSGPFKRPGVYELP 272

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRGAIMDYDGLKEMGSGLG 316
           M  TF EL+    GG     + + A+IPGGSS P LP         MDY+ L   GS LG
Sbjct: 273 MGTTFRELLMDWAGGPT---EPIQAIIPGGSSCPPLPWNDDTLDTPMDYESLAAKGSLLG 329

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMMRVMERLVKGIAQKREI 375
           T  VI +  S  ++ A+W ++ FY HESCG+CTPCREG +GWM+ + E++ +G  +  ++
Sbjct: 330 TGGVIGIPASMSMVDAMWNVTRFYGHESCGKCTPCREGVSGWMVGLFEKIGRGQGKPGDV 389

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +LL ++   IEGR+ CAL DAA WP++G +K+FR    E ++Q
Sbjct: 390 ELLEDLLDQIEGRSFCALADAACWPVRGSLKHFRHQYVELVEQ 432


>gi|311897895|dbj|BAJ30303.1| putative NADH-quinone oxidoreductase subunit F [Kitasatospora setae
           KM-6054]
          Length = 453

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/407 (50%), Positives = 270/407 (66%), Gaps = 6/407 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L      G +D +   L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PH
Sbjct: 27  TLDTYRRHGGYDGLAAALAMPPDDVIALVKDSGLRGRGGAGFPTGMKWQFIPQ-NDGKPH 85

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD  ++   PH LIEG VIAS+AI    AF+Y+RGE +     LQA
Sbjct: 86  YLVVNADESEPGTCKDIPLLFANPHALIEGMVIASYAIRCEHAFVYLRGEVVPVLRRLQA 145

Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV E YA+G LG + +  G ++DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA
Sbjct: 146 AVAEAYAAGYLGKDIQGSGINLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPA 205

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLY CPT VNNVESIA VP IL RG  W++  G E + G  L+S+SGHV  P   E  
Sbjct: 206 IAGLYACPTVVNNVESIASVPPILARGKDWFTSLGTEKSPGFTLYSLSGHVTNPGQYEAP 265

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           + IT  +L+E   GG+R G   L    PGGSS P      +    +DY+G+   GS LGT
Sbjct: 266 LGITLRQLLEI-TGGVRAG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGT 322

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A+ V D +T +++A+ R + FY HESCG+CTPCREGT W++++++R+  G     +++ 
Sbjct: 323 KALQVFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLKRIEAGQGAPGDLEK 382

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           L +++ NI G++ CALGD AA PI   +++FR   E+ +++ HRC F
Sbjct: 383 LLDIADNINGKSFCALGDGAASPIVSSLQHFRAEYEQHLNE-HRCPF 428


>gi|237746746|ref|ZP_04577226.1| NADH dehydrogenase subunit I F [Oxalobacter formigenes HOxBLS]
 gi|229378097|gb|EEO28188.1| NADH dehydrogenase subunit I F [Oxalobacter formigenes HOxBLS]
          Length = 433

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/414 (50%), Positives = 284/414 (68%), Gaps = 9/414 (2%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           GL G+  +L+D  +RG ++ + +IL        I+ EV+ +GLRGRGGAGF T +KW FM
Sbjct: 16  GLTGENWTLADYRARGGYEQIGRILGGHMPAGQIVAEVRTAGLRGRGGAGFPTAVKWGFM 75

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
           PK  + +  YL+ NADESEPGT KDRDI+R+ PH +IEG +IA++A+G    +IY+ GE 
Sbjct: 76  PKDHAGQT-YLICNADESEPGTFKDRDILRYNPHAVIEGMLIAAYAMGITAGYIYIHGEI 134

Query: 130 IRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
               E    A+ +   +GL+G N    G+D ++   HG GAYICGEETALLES+EGK+GQ
Sbjct: 135 WTVYERFGEAIRQAREAGLIGKNIMDSGFDFELHAVHGYGAYICGEETALLESMEGKRGQ 194

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR KPPFPA  GLYG PTT+NNVE++A VP I+  G   Y+G GR+   GTK+FS+SG V
Sbjct: 195 PRFKPPFPAANGLYGRPTTINNVETLAYVPFIMAMGGKAYAGLGRDGCSGTKVFSVSGDV 254

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E  + I F EL+E   GG++GG + + AVIPGGSS P LPA  M    MDYD +
Sbjct: 255 VCPGNYEVPLGIPFPELLEL-AGGVKGG-NKIRAVIPGGSSSPVLPAETMLALNMDYDSI 312

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            + GS LGT  VIV+D +  ++K++  LS FY +ESCGQCTPCREGTGW+++++ER+ KG
Sbjct: 313 AKAGSMLGTGGVIVLDETRCMVKSLLNLSRFYWNESCGQCTPCREGTGWLVKLIERIEKG 372

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             +  ++DLL  V+ NI+GRTICALGDAAA P++  +++FR   E  I ++ RC
Sbjct: 373 QGKPADLDLLDTVAANIQGRTICALGDAAAMPVRSFLRHFRQEFEYHI-EHKRC 425


>gi|24653819|ref|NP_725449.1| CG8102, isoform A [Drosophila melanogaster]
 gi|7303085|gb|AAF58152.1| CG8102, isoform A [Drosophila melanogaster]
          Length = 481

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 259/423 (61%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W    ++LE+G +WI+ +V  SGLRGRGGAGF 
Sbjct: 58  LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQVSKSGLRGRGGAGFY 117

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            G+KW F+ +  S++ P  ++VN  E EPGTCKDRDI+RHEPH LIEG ++   A+G   
Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG++    G   D++V  G   Y+CGEETA++
Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 296

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ +SG VN PCTVEE MSI   +LIE+H GG++GGWDNL AV PGG S P L      
Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 356

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRKIEERLLK 476

Query: 419 YHR 421
           Y +
Sbjct: 477 YAK 479


>gi|294630801|ref|ZP_06709361.1| NADH oxidoreductase, F subunit [Streptomyces sp. e14]
 gi|292834134|gb|EFF92483.1| NADH oxidoreductase, F subunit [Streptomyces sp. e14]
          Length = 456

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/389 (51%), Positives = 257/389 (66%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 48  YEGLRKALAMSPDDVIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 106

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L +AV E YA+G 
Sbjct: 107 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHSAVREAYAAGY 166

Query: 149 LGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 167 LGENVLGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 226

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL+ G  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 227 VNNVESIASVPAILKNGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLD 286

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 287 M-SGGMRPG-HRLKFWTPGGSSTPMFTDEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 343

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  ++D L +++ NI G
Sbjct: 344 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRMTDLDKLNDIADNING 403

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   EE I
Sbjct: 404 KSFCALGDGAASPIFSSLKYFRAEYEEHI 432


>gi|226355364|ref|YP_002785104.1| NADH dehydrogenase (quinone) subunit F [Deinococcus deserti VCD115]
 gi|226317354|gb|ACO45350.1| putative NADH dehydrogenase (quinone), subunit F (NADH-quinone
           oxidoreductase, subunit F) [Deinococcus deserti VCD115]
          Length = 446

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/410 (48%), Positives = 265/410 (64%), Gaps = 11/410 (2%)

Query: 7   RIFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           R    LY   G+    +L+     G ++ V +  E G D +I+EVK SGLRGRGGAGF+T
Sbjct: 18  RFAPTLYAHVGQPDSWTLAYYRDNGGYEAVRRAFEMGPDAVIDEVKKSGLRGRGGAGFAT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP +   R HY++ NADESEPG+ KDR ++  +PH LIEG +IA +A+ A   +
Sbjct: 78  GLKWSFMP-LNDGRKHYVICNADESEPGSFKDRYLLSEDPHQLIEGMLIAGYAMRATVGY 136

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+RGE++   E +  A+ E  A+GLLG N    G+D D+ VH GAGAYICGEETAL+ S
Sbjct: 137 IYIRGEYVHAAERVWQAIHEARAAGLLGRNVLGSGFDFDLQVHRGAGAYICGEETALMNS 196

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEG +  PRLKPPFPA  GLYG PTT+NNVE+      IL+ G+ W++G G E ++G KL
Sbjct: 197 LEGLRANPRLKPPFPAAAGLYGLPTTINNVETFCAATQILKFGSEWHAGMGTERSKGMKL 256

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRG 300
           F ISG V  P   E  +  TF ELI    GG     + + A+IPGGSS P LP + ++  
Sbjct: 257 FQISGPVARPGVYELPLGTTFRELIYDWAGGP---LEEMKAIIPGGSSCPMLPWSDRILD 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMM 359
             MDY+ +   GS LGT  V ++ R+  I+ A W L  FY HESCG+CTPCREG +GWM+
Sbjct: 314 TPMDYEAIAAAGSMLGTGGVTLIPRADCIVNATWNLVRFYAHESCGKCTPCREGISGWMV 373

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ E+LV+G  Q  ++ L+ ++S+NI GR+ CAL DA   P+   I  FR
Sbjct: 374 KMYEKLVRGHGQPGDVQLILDMSENIGGRSFCALADACLGPVLSSISLFR 423


>gi|297563972|ref|YP_003682945.1| NADH-quinone oxidoreductase, F subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848421|gb|ADH70439.1| NADH-quinone oxidoreductase, F subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 439

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/410 (49%), Positives = 262/410 (63%), Gaps = 10/410 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L    + G +  + K L    D I++ VK SGLRGRGGAGF TGMKW F+P   +  P 
Sbjct: 19  TLEGYRATGGYGALRKALAMEPDAIVDLVKKSGLRGRGGAGFPTGMKWGFLP-ADNPNPR 77

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD  +M   PH L+EG  IA++AI +  AFIYVRGE +     L+ 
Sbjct: 78  YLVVNADESEPGTCKDIPLMLANPHVLVEGVAIAAYAIKSSQAFIYVRGEVLHVIRRLRR 137

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV E Y +GLLG +    G+D+D++VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA
Sbjct: 138 AVAEAYEAGLLGRDVLGTGFDLDVVVHAGAGAYICGEETALLDSLEGYRGQPRLKPPFPA 197

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLY  PT VNNVESIA VP+I+  GA W++  G E + G   FS+SGHV  P   E  
Sbjct: 198 VAGLYASPTVVNNVESIASVPSIVANGAEWFTSMGTEKSAGFGFFSLSGHVANPGQYEAP 257

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           + +T  EL++   GG+R G   L    PGGSS P      +    +D++ +   GS LGT
Sbjct: 258 LGVTLRELLDM-SGGMRPG-HRLKFWTPGGSSTPIFTEEHLD-TPLDFESVGAAGSMLGT 314

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A+ + D +T ++KA+ R   FY HESCG+CTPCREG  WM++V++RL  G   + ++D 
Sbjct: 315 RALQIFDETTCVVKAVGRWIAFYAHESCGKCTPCREGNFWMVQVLDRLENGQGTEADLDK 374

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR--CNFQ 425
           L ++  N+ GR+ CALGD A  P+   IK+FR   +E ID   R  C F 
Sbjct: 375 LLDICDNLLGRSFCALGDGATSPVTSSIKHFR---QEYIDHVERGGCPFD 421


>gi|325003719|ref|ZP_08124831.1| NADH-quinone oxidoreductase, F subunit [Pseudonocardia sp. P1]
          Length = 454

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/388 (51%), Positives = 257/388 (66%), Gaps = 14/388 (3%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMP------KVCSDRPHYLVVNADESEPGTCKD 94
           D +I  +K SGLRGRGGAGF TGMKW F+P      K    +P YLV+NADE EPGTCKD
Sbjct: 44  DQLIQLIKDSGLRGRGGAGFPTGMKWGFIPQDDGSGKGPGAKPKYLVINADEGEPGTCKD 103

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
              M  +PH+LIEGC++ S+AI A+   IYVRGE +     L+AAV E  A G LG++  
Sbjct: 104 IPTMMADPHSLIEGCIVTSYAIRANFCAIYVRGEALHCIRRLRAAVREAKARGYLGTDIL 163

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D++I+VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA  GLY CPT VNNVE+
Sbjct: 164 GSGFDLEIVVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPATAGLYACPTVVNNVET 223

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           IA VP I+  G+ W+   GRE + G K++SISGHV  P   E  + IT  EL+E   GG+
Sbjct: 224 IASVPAIVNGGSDWFRSMGREKSPGPKIYSISGHVERPGQYEAPLGITLRELLEL-AGGM 282

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
           + G   L    PGGSS P L A  +    +D++G  E GS LGT AV V + +  +  A+
Sbjct: 283 KDGV-PLKFWTPGGSSTPLLTADHLD-VPLDFEGAAEAGSMLGTTAVQVFNETVSVPWAV 340

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            + + FYKHESCG+CTPCREGT W+++V+ER+V G     ++D++ +V  NI GR+ CAL
Sbjct: 341 MKWTEFYKHESCGKCTPCREGTYWLVQVLERMVHGQGTSADVDMMLDVCDNILGRSFCAL 400

Query: 394 GDAAAWPIQGLIKNFRP----LIEERID 417
           GD A  PI   I  FR     LI E+ D
Sbjct: 401 GDGATSPITSGITYFRQEFLDLIAEQPD 428


>gi|194882859|ref|XP_001975527.1| GG22361 [Drosophila erecta]
 gi|190658714|gb|EDV55927.1| GG22361 [Drosophila erecta]
          Length = 481

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/424 (45%), Positives = 258/424 (60%), Gaps = 6/424 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W     +LE+G +W++ E+   GLRGRGGAGF 
Sbjct: 58  LNDCDRVFQNLYGRHDWRLQGACQRGDWHRTADLLEQGPEWMMKEISKCGLRGRGGAGFY 117

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            G+KW F+ +  S++ P  L+VN  E EPGTCKDRDI+RHEPH LIEG ++   A+G   
Sbjct: 118 AGLKWEFLRQTKSEKVPKMLIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178
           A +Y+R  F  E  +L  A+ E Y  GLLG +S  G D+  D++V  G   Y+CGEETAL
Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLG-DSACGTDIKFDVMVQRG-DRYLCGEETAL 235

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +  L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N G
Sbjct: 236 INCLMGKLGRPRRRPPFLTEKGYFEHPCLVVNAESIAVVPTILRRGSQWWAGLGRSYNTG 295

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKL+ ISG VN PCTVEE MSI   +LIE+H GG++GGWD L AV PGG S P L     
Sbjct: 296 TKLYCISGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDKLAAVFPGGLSTPLLDPSTA 355

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              +MD+D L + GSG G  AVIV+ +  D +  + R   F++  +C QCT CR+G  W+
Sbjct: 356 GKVLMDFDSLADAGSGFGCGAVIVISKDCDPLAVMLRSIQFFEKHTCKQCTYCRDGAIWL 415

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERID 417
             +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ 
Sbjct: 416 PEMFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVAVAESLVRMFSRQIEERLL 475

Query: 418 QYHR 421
           +Y +
Sbjct: 476 KYAK 479


>gi|302553431|ref|ZP_07305773.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471049|gb|EFL34142.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 449

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/389 (50%), Positives = 257/389 (66%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 42  YEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 100

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG +IA +AI +  AFIY+RGE +     L +AV E Y +G 
Sbjct: 101 PGTCKDIPLLFANPHSLIEGMIIACYAIRSSHAFIYLRGEVVPVLRRLHSAVREAYEAGF 160

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 161 LGENILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 220

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP I++RG  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 221 VNNVESIASVPAIMQRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 280

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P     +     +DY+G+   GS LGT A+   D +T
Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 337

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  Q  ++D L +++ NI G
Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSDLDKLNDIADNING 397

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ I
Sbjct: 398 KSFCALGDGAASPIFSSLKYFRDEYEQHI 426


>gi|300782456|ref|YP_003762747.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
 gi|299791970|gb|ADJ42345.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
          Length = 431

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/382 (52%), Positives = 255/382 (66%), Gaps = 5/382 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  V K L    + ++  VK SGLRGRGGAGF  G+KWSFMP    D+PHYLV+NADE E
Sbjct: 30  YTAVRKALAGTPEQLVQLVKDSGLRGRGGAGFPAGIKWSFMPPNF-DKPHYLVINADEGE 88

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  +M  +PH+LIEGC+IAS+A+ ++  FIYVRGE +     L AAV E  A+G 
Sbjct: 89  PGTCKDIPLMMADPHSLIEGCIIASYAMRSNHCFIYVRGEALHCIRRLNAAVREAEAAGY 148

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G+D+ I VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA  GLY  PTT
Sbjct: 149 LGENILGSGFDLKITVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPAAAGLYAAPTT 208

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+IA  P I+  G+SW+   GRE + G K++SISGHV  P   E  +  T  EL++
Sbjct: 209 VNNVETIASAPFIVNGGSSWFREMGREKSPGPKIYSISGHVEKPGQYECPLGTTLRELLD 268

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG++ G   L    PGGSS P      +    +D++G  E GS LGT AV V + + 
Sbjct: 269 M-AGGMKDGIP-LKFWTPGGSSTPMFTVEHLD-VPLDFEGAAEAGSMLGTTAVQVFNETV 325

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +  A+ + + FY+HESCG+CTPCREGT W+ +++ER+V+G   + +ID L +V  NI G
Sbjct: 326 SVPWAVMKWTQFYEHESCGKCTPCREGTYWLAQILERMVEGHGTEEDIDTLLDVCDNILG 385

Query: 388 RTICALGDAAAWPIQGLIKNFR 409
           R+ CALGD A  PI   IK FR
Sbjct: 386 RSFCALGDGAVSPITSGIKYFR 407


>gi|195486237|ref|XP_002091420.1| GE12249 [Drosophila yakuba]
 gi|194177521|gb|EDW91132.1| GE12249 [Drosophila yakuba]
          Length = 481

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/425 (45%), Positives = 258/425 (60%), Gaps = 4/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W     +LE+G +WI+ ++  SGLRGRGGAGF 
Sbjct: 58  LNDCDRVFQNLYGRHDWRLQGACQRGDWHRTADLLEQGPEWIMEQIGKSGLRGRGGAGFY 117

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            G+KW F+ +  S + P  ++VN  E EPGTCKDRDI+RHEPH LIEG ++   A+G   
Sbjct: 118 AGLKWEFLRQTKSAKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG S    G   D++V  G   Y+CGEETA++
Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGDSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 296

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISG VN PCTVEE MSI   +LIE+H GG++GGWDNL AV PGG S P L      
Sbjct: 297 KLYCISGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPPTAG 356

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L++ GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 357 KVLMDFDSLQDAGSGFGCGAVIVMTKDCDPLAVMLRSIQFFEKHTCKQCSYCRDGAIWLP 416

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 417 EMFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVGVAESLVRMFSRQIEERLLK 476

Query: 419 YHRCN 423
           Y + +
Sbjct: 477 YAKAS 481


>gi|72163089|ref|YP_290746.1| NADH-quinone oxidoreductase, F subunit [Thermobifida fusca YX]
 gi|71916821|gb|AAZ56723.1| NADH-quinone oxidoreductase, F subunit [Thermobifida fusca YX]
          Length = 438

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/403 (49%), Positives = 257/403 (63%), Gaps = 8/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L      G ++ + K L    D I+  VKASGLRGRGGAGF TGMKW F+PK  + +P 
Sbjct: 19  TLDAYRENGGYEALRKALTMEPDAIVEMVKASGLRGRGGAGFPTGMKWGFLPK-DNPKPR 77

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD  +M   PH LIEG +I+++AI +H AFIYVRGE +     L+ 
Sbjct: 78  YLVVNADESEPGTCKDIPLMMANPHALIEGVIISAYAINSHQAFIYVRGEVLHVIRRLRH 137

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV E Y +GLLG +    G+D+D++VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA
Sbjct: 138 AVAEAYEAGLLGKDILGSGFDLDVVVHAGAGAYICGEETALLDSLEGYRGQPRLKPPFPA 197

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLY  PT VNNVESIA VP+I+  GA W+   G E + G   FS+SGHV  P   E  
Sbjct: 198 VAGLYASPTVVNNVESIATVPSIVANGAEWFKSMGTEKSAGFGFFSLSGHVKRPGQYEAP 257

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           + +T  EL+E   GGIR G   L    PGGSS P      +    +D++ +   GS LGT
Sbjct: 258 LGVTLRELLEM-AGGIRDG-HRLKFWTPGGSSTPIFTEEHID-IPLDFESVGGAGSMLGT 314

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A+ + D +T +++ +     FY HESCG+CTPCREG  WM++V+ R+  G   + +ID 
Sbjct: 315 RALQIFDETTSVVRVVRGWIEFYAHESCGKCTPCREGNYWMVQVLRRIEAGKGTQEDIDT 374

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           L ++  N+ GR+ CALGD A   +   IK FR   EE I   H
Sbjct: 375 LLDICDNLLGRSFCALGDGATSSVTSAIKYFR---EEFIAGTH 414


>gi|326329615|ref|ZP_08195937.1| NADH oxidoreductase (quinone), F subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325952611|gb|EGD44629.1| NADH oxidoreductase (quinone), F subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 436

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/403 (51%), Positives = 267/403 (66%), Gaps = 6/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77
           +L    + G ++ +D  L    + +   VK SGLRGRGGAGF TG+KW F+P    + P 
Sbjct: 20  TLPAYTATGGYEALDVALRMAPEDVQTTVKDSGLRGRGGAGFPTGVKWGFLPPPDPENPK 79

Query: 78  -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YLVVNADESEPGTCKD  +M   PHTL+EG +I+S+AI A  AFIYVRGE +     L
Sbjct: 80  PRYLVVNADESEPGTCKDIPLMMASPHTLVEGVIISSYAIRAERAFIYVRGEVLHVIRRL 139

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           QAAV E YA+G LG+N    GYD++++VH GAGAYICGEETALL+SLEG++GQPRL+PPF
Sbjct: 140 QAAVREAYAAGHLGTNIHGSGYDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 199

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT +NN ESIA VP I++ GASW++G G E + G  +FS+SGHV  P   E
Sbjct: 200 PAVAGLYASPTVINNAESIASVPAIVKNGASWFAGMGTEKSAGVGIFSLSGHVKKPGQYE 259

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + IT  +LIE   GG+R G   L    PGGSS P      +    +D++G+   GS L
Sbjct: 260 APLGITLRQLIEL-AGGVREG-HELKFWTPGGSSTPLFTQEHLD-VTLDFEGVAAAGSML 316

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+ + D S  +++A+ R + FYKHESCG+CTPCREGT W+++V+ERL KG  +  ++
Sbjct: 317 GTRALQIFDDSVCVVRAVLRWTEFYKHESCGKCTPCREGTWWLVQVLERLEKGDGKPEDL 376

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           DLL +   NI GR+ CALGD A  PI   IK FR      ++Q
Sbjct: 377 DLLLDQCDNILGRSFCALGDGATSPITSSIKYFRDEYLAHLEQ 419


>gi|328950036|ref|YP_004367371.1| NADH-quinone oxidoreductase, F subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450360|gb|AEB11261.1| NADH-quinone oxidoreductase, F subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 442

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/420 (47%), Positives = 269/420 (64%), Gaps = 12/420 (2%)

Query: 7   RIFTNLYGLQGK----SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFS 61
           R    LY   G+    +L   ++ G ++   K L +   D +I EVK SGLRGRGGAGF 
Sbjct: 15  RFVRTLYAHVGRPNSWTLEYYLAHGGYEAARKALTRMTPDEVIEEVKKSGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMPK    + HY+V NADESEPG+ KDR ++  +PH LIEG +IA +AI A   
Sbjct: 75  TGVKWSFMPKEPKTQ-HYIVCNADESEPGSFKDRYLLEDDPHQLIEGMIIAGYAIRATKG 133

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           ++YVRGE+ R  + L AA+ E YA G LG N    G+  D+ VH GAGAYICGEETAL+ 
Sbjct: 134 YVYVRGEYRRAYDRLTAAIREAYAKGYLGENLFGSGFSFDLYVHRGAGAYICGEETALMN 193

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +  PR+KPPFPA  GLYG PTT+NNVE++  V  I+ RGA W+   G E ++G K
Sbjct: 194 SLEGLRANPRMKPPFPAQSGLYGKPTTINNVETLCSVVHIIERGADWFGQMGTERSKGHK 253

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299
           LF ISG V  P   E  +  TF ELI    GG     + + A+IPGGSS P +P   ++ 
Sbjct: 254 LFQISGPVRRPGVYELPLGTTFRELIYDWAGGPT---EPIKAIIPGGSSTPPVPWTDEVL 310

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWM 358
            + MDY+  + +G+ LGT  VI++  S  I+ A+W ++ FY HESCG+CTPCREG +GW+
Sbjct: 311 DSPMDYEHCQRLGTLLGTGGVILIPESVCIVNAMWNVTRFYAHESCGKCTPCREGVSGWL 370

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++ E++ +G  +  +++LL  +  NIEG+  C L DAA WP++G +K+FR   E  I+ 
Sbjct: 371 PKLFEKIERGRGEPGDVELLENLLDNIEGKAFCPLADAAVWPVRGSLKHFRHEYEHHIEH 430


>gi|312131899|ref|YP_003999239.1| NADH dehydrogenase subunit f [Leadbetterella byssophila DSM 17132]
 gi|311908445|gb|ADQ18886.1| NADH dehydrogenase subunit F [Leadbetterella byssophila DSM 17132]
          Length = 446

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/409 (50%), Positives = 264/409 (64%), Gaps = 20/409 (4%)

Query: 26  RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
            G +  V+K L+    D ++ EVK SG+RGRGGAGF  GMKWSF+ K     P YLV N 
Sbjct: 24  HGGYSAVEKALKTMSPDEVVEEVKKSGIRGRGGAGFPMGMKWSFLAK-PEGVPRYLVCNG 82

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT KD  +M++ PH LIEG +++SFA+GA+ +FIYVRGE +     L+ A++E  
Sbjct: 83  DESEPGTFKDHYLMKNIPHLLIEGMIVSSFALGANKSFIYVRGELMYVIRILEKAIEEAK 142

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
           A+G LG N    GYD++++V  G GAYICGEETALLESLEGK+G PR KPPFPA  GLY 
Sbjct: 143 AAGFLGKNILGTGYDLELVVQPGGGAYICGEETALLESLEGKRGNPRNKPPFPAVKGLYE 202

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVESIA  P I+  G   Y+  G   + GTKL S SG+V  P   E  + +  +
Sbjct: 203 SPTVVNNVESIANTPWIVNNGGDAYASIGIGRSTGTKLISASGNVKKPGVYEIELGVPVE 262

Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE--- 310
           E I  +++ GGIR G   L AV+ GGSSVP LPA        G+ R  +M Y+ L +   
Sbjct: 263 EFIYSDEYLGGIRDG-HYLKAVVAGGSSVPILPANLILKTAGGEQR--LMTYESLSDGGF 319

Query: 311 -MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
             G+ LG+   IVMD +  I++  W  S FY HESCGQC+PCREGTGW+ +V+ R+  G 
Sbjct: 320 ATGTMLGSGGFIVMDETNCIVRNTWNFSRFYHHESCGQCSPCREGTGWLEKVLYRIEHGQ 379

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +R+IDLL +V+K IEG TIC LGDAAAWP+   I++FR   E  I  
Sbjct: 380 GNERDIDLLVDVAKRIEGNTICPLGDAAAWPVGSAIRHFRDEFEWHIKN 428


>gi|310818918|ref|YP_003951276.1| NADH dehydrogenase I subunit f [Stigmatella aurantiaca DW4/3-1]
 gi|309391990|gb|ADO69449.1| NADH dehydrogenase I, subunit F [Stigmatella aurantiaca DW4/3-1]
          Length = 445

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/420 (47%), Positives = 274/420 (65%), Gaps = 16/420 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  +L     RG ++++ K LE     II+EVK S LRGRGGAGF TG+KWSF+PK  + 
Sbjct: 19  QSWTLEHYRKRGGYESLKKALEMAPAAIIDEVKKSNLRGRGGAGFPTGLKWSFVPKD-NP 77

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +P YL VNADESEPGT KDR I+  +PH ++EG  IA++A+G H  +IY+RGEF    + 
Sbjct: 78  KPKYLTVNADESEPGTFKDRYILSLDPHMMLEGIAIAAYALGVHTCYIYMRGEFKHPAQR 137

Query: 136 LQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            QAA+ E YA+G+ G  + LG  Y+++  +  GAGAYICGEETALLESLEGKKG PRLKP
Sbjct: 138 TQAAIQEAYAAGIFG-KTLLGRDYELNCYLVRGAGAYICGEETALLESLEGKKGWPRLKP 196

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA VGL+G PT +NNVE+++ VP I  RGA WYS  G + + GT+L  +SG VN P  
Sbjct: 197 PFPAVVGLFGSPTVINNVETLSNVPHIFARGADWYSKLGTDKSGGTRLVCLSGTVNRPGV 256

Query: 254 VEESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
            E  +  T  ELI  +K+  G+  G  ++ AVIPGGSS P L   ++  A ++++ L+  
Sbjct: 257 YEIPLQTTVSELIFGDKYGQGLPAG-RSVKAVIPGGSSAPVLSPNELDVA-LEFEALRLK 314

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
            +  G+  VIVMD ++ +++ +WR++ FY  ESCGQCTPCREGT W  R++ ++ +G  +
Sbjct: 315 QTMAGSGGVIVMDDTSCMVRCLWRVARFYAEESCGQCTPCREGTPWQTRLLRKIEEGRGE 374

Query: 372 KREIDLLYEVSKNIE-------GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
             +I++L  V+ +I        G TICALGDAAA P    +  FR   E  I +  RC F
Sbjct: 375 MADIEMLSHVASSIAPYPPMGLGNTICALGDAAALPTHSFLMRFRAEFEAHIHE-KRCPF 433


>gi|256785936|ref|ZP_05524367.1| NuoF, NADH dehydrogenase subunit [Streptomyces lividans TK24]
          Length = 448

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/389 (50%), Positives = 255/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 41  YEGLRKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 99

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L  AV E YA+G 
Sbjct: 100 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGF 159

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+ + VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 160 LGENILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 219

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 220 VNNVESIASVPAILNKGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLD 279

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P     +     +DY+G+   GS LGT A+   D +T
Sbjct: 280 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 336

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  Q  ++D L +++ NI G
Sbjct: 337 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSDLDKLNDIADNING 396

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   EE I
Sbjct: 397 KSFCALGDGAASPIFSSLKYFREEYEEHI 425


>gi|124487823|gb|ABN11995.1| putative NADH dehydrogenase (ubiquinone) flavoprotein 1
           [Maconellicoccus hirsutus]
          Length = 266

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/259 (67%), Positives = 208/259 (80%)

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +H GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV+NVE++AV PTI R
Sbjct: 1   MHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLFGCPTTVSNVETVAVSPTICR 60

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
           RG  W+  FGR  N GTKLF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLLA
Sbjct: 61  RGGDWFVSFGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIERHAGGVIGGWDNLLA 120

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
           VIPGGSS P +P       +MD+DGL    + LGTAAVIVM++ TD++KAI RL +FYKH
Sbjct: 121 VIPGGSSTPLIPKKVCEDVMMDFDGLVAAQTSLGTAAVIVMNKQTDVVKAIARLIMFYKH 180

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ESCGQCTPCREG  WM ++M R V G  Q  EID+L+E+SK IEG TICALGD AAWP+Q
Sbjct: 181 ESCGQCTPCREGINWMNKMMYRFVDGNGQTPEIDMLWELSKQIEGHTICALGDGAAWPVQ 240

Query: 403 GLIKNFRPLIEERIDQYHR 421
           GLI++FRP IE RI ++ +
Sbjct: 241 GLIRHFRPEIERRISEFQK 259


>gi|21222950|ref|NP_628729.1| NuoF, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
 gi|289769829|ref|ZP_06529207.1| NADH oxidoreductase (quinone), F subunit [Streptomyces lividans
           TK24]
 gi|7387968|sp|Q9XAQ9|NUOF_STRCO RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|5042272|emb|CAB44526.1| NuoF, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
 gi|289700028|gb|EFD67457.1| NADH oxidoreductase (quinone), F subunit [Streptomyces lividans
           TK24]
          Length = 449

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/389 (50%), Positives = 255/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 42  YEGLRKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 100

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L  AV E YA+G 
Sbjct: 101 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGF 160

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+ + VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 161 LGENILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 220

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 221 VNNVESIASVPAILNKGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLD 280

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMFTDEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 337

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  Q  ++D L +++ NI G
Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSDLDKLNDIADNING 397

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   EE I
Sbjct: 398 KSFCALGDGAASPIFSSLKYFREEYEEHI 426


>gi|312890391|ref|ZP_07749928.1| NADH dehydrogenase subunit F [Mucilaginibacter paludis DSM 18603]
 gi|311297161|gb|EFQ74293.1| NADH dehydrogenase subunit F [Mucilaginibacter paludis DSM 18603]
          Length = 453

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/403 (49%), Positives = 259/403 (64%), Gaps = 16/403 (3%)

Query: 25  SRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           S+G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+ K       YLV N
Sbjct: 23  SKGGYAAVEKALKTLTPDEVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVARYLVCN 81

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGT KDR +M + PH LIEG ++AS+A+GA  ++IYVRGE + +   L+ A+ E 
Sbjct: 82  ADESEPGTFKDRFLMTYIPHLLIEGMIVASYALGAKVSYIYVRGEMMPQIRILEKAIAEA 141

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
              G LG N    GYD+++ V  G GAYICGEETALLESLEGK+G PR+KPPFPA  GLY
Sbjct: 142 KNKGFLGKNILGTGYDLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAIAGLY 201

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           GCPT VNNVESIA V  I+  G   Y+  G   + GTKL S SG++  P   E  + +  
Sbjct: 202 GCPTVVNNVESIAAVVPIINDGGEEYAKIGIGRSTGTKLISASGNIKNPGIYEIELGVPV 261

Query: 263 DELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE---- 310
           +E +  +++CGG+  G     A++ GGSSVP LPA  +   I      M Y+ L +    
Sbjct: 262 EEFLYSDEYCGGMANG-KRFKALVAGGSSVPILPANLVTKTINQEARLMSYESLSDGGFA 320

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            G+ +G+   IV D    I++  W  + FY HESCGQC+PCREGTGWM +V+ RL  G  
Sbjct: 321 TGTMMGSGGFIVFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTGWMEKVLHRLEYGHG 380

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +  ++DLL +VSK IEG TIC LGDAAAWP+   I++FR   E
Sbjct: 381 KMSDMDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFE 423


>gi|256380660|ref|YP_003104320.1| NADH-quinone oxidoreductase, F subunit [Actinosynnema mirum DSM
           43827]
 gi|255924963|gb|ACU40474.1| NADH-quinone oxidoreductase, F subunit [Actinosynnema mirum DSM
           43827]
          Length = 431

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/377 (50%), Positives = 252/377 (66%), Gaps = 5/377 (1%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K L+   D +I + K SGLRGRGGAGF TGMKW F+P+    +PHYLV+NADE EPGTCK
Sbjct: 35  KALKVHPDQLIQQCKDSGLRGRGGAGFPTGMKWGFIPQ-GDGKPHYLVINADEGEPGTCK 93

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152
           D  +M  +PH+L+EG +I S+AI A+ A IYVRGE +     L AAV E Y +G LG + 
Sbjct: 94  DIPLMMADPHSLVEGIIITSYAIRANFAAIYVRGEVLHVIRRLNAAVREAYEAGYLGKDI 153

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
              G+D+D++VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA  GLY  PT VNNVE
Sbjct: 154 LGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPATAGLYASPTVVNNVE 213

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           +IA VP ++  G+ W+   GR+ + G K++S+SGHV  P   E  M  T   L+E   GG
Sbjct: 214 TIASVPYVVNGGSDWFRTMGRDRSPGPKIYSLSGHVERPGQYEAPMGTTLRTLLE-MAGG 272

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           ++ G   L    PGGSS P   A  +    +D++G+ E GS LGT AV + + +  +  A
Sbjct: 273 MKDGVP-LKFWTPGGSSTPLFTAEHLD-VPLDFEGVAEAGSMLGTTAVQIFNETVSVPWA 330

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
           + + + FYKHESCG+CTPCREGT W+ + ++R+V+G     +ID L +V  NI GR+ CA
Sbjct: 331 VMKWTEFYKHESCGKCTPCREGTYWLTKTLQRMVRGEGTPSDIDTLLDVCSNILGRSFCA 390

Query: 393 LGDAAAWPIQGLIKNFR 409
           LGD A  PI   IK F+
Sbjct: 391 LGDGAVSPITSGIKYFK 407


>gi|84494925|ref|ZP_00994044.1| putative NADH dehydrogenase I chain F [Janibacter sp. HTCC2649]
 gi|84384418|gb|EAQ00298.1| putative NADH dehydrogenase I chain F [Janibacter sp. HTCC2649]
          Length = 437

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/368 (52%), Positives = 245/368 (66%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++   K SGLRGRGGAGF TGMKW F+P      P YLVVNADESEPGTCKD  +M   P
Sbjct: 44  LVQMTKDSGLRGRGGAGFPTGMKWGFLPPP-DGGPRYLVVNADESEPGTCKDIPLMMAAP 102

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
             LIEGCVI S+AIG + AFIY+RGE +     L  AV+E YA+G LG N    G+D+DI
Sbjct: 103 QFLIEGCVITSYAIGCNHAFIYLRGEVVHVYRRLLRAVEEAYAAGHLGKNIHGSGFDLDI 162

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA  GLY  PT VNNVESIA +P I 
Sbjct: 163 TVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPAVAGLYARPTVVNNVESIASIPPIF 222

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA W+S  G E ++G  +FS+SGHV +P   E  + IT  EL++   GG+R     L 
Sbjct: 223 LHGADWFSDMGTEKSQGFGIFSLSGHVKHPGQYEAPLGITLRELLDM-AGGMRDPEKALK 281

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
              PGGSS P   A  +    +D++ +   GS LGT A+ + D +T +++A+ R + FYK
Sbjct: 282 FWTPGGSSTPLFTAEHLD-TPLDFESVAAAGSMLGTRALQIFDETTCVVRAVDRWTDFYK 340

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
           HESCG+CTPCREGT W+ +++ RL  G   + ++D L ++  NI GR+ CALGD A  PI
Sbjct: 341 HESCGKCTPCREGTWWLKQILGRLEHGQGSEEDLDKLLDICDNILGRSFCALGDGATSPI 400

Query: 402 QGLIKNFR 409
              I+ FR
Sbjct: 401 TSSIQYFR 408


>gi|297625733|ref|YP_003687496.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           (NDH-1, chain F) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921498|emb|CBL56052.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           (NDH-1, chain F) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 446

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/372 (51%), Positives = 245/372 (65%), Gaps = 5/372 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ VKASGLRGRGGAGF TGMKWSF+P+  + +P YLVVN DESEPGTCKD  ++   P
Sbjct: 45  VIDLVKASGLRGRGGAGFPTGMKWSFIPQD-NPKPKYLVVNCDESEPGTCKDMPMLIATP 103

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           HTL+EG +IA +A+ AH AFI+ RGE +     L  AV E Y  G LG +    GYD+DI
Sbjct: 104 HTLLEGIIIACYAVNAHHAFIFCRGEVLHAIRRLSQAVREAYDKGYLGKDLFGTGYDLDI 163

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           +VH GAGAYICGEETALL +LEG +GQPRL+PPFPA  GLY CPT VNN ESIA VP I+
Sbjct: 164 VVHSGAGAYICGEETALLSALEGHRGQPRLRPPFPAVEGLYACPTVVNNAESIASVPAIV 223

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R GA WY   G E ++G  ++S+SGHV  P   E  + ITF +++E   GG+R G   L 
Sbjct: 224 RNGAEWYQSMGTEKSKGATIYSLSGHVKRPGQFEAPLGITFRQILELG-GGVRDG-HQLK 281

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
              PGGSS P     Q+    +DY+G+   GS LGT A+ V D +T +++   R + FYK
Sbjct: 282 FFTPGGSSTPMFTPEQLD-VPLDYEGVSAAGSILGTKALQVFDETTSVVRTTLRWTEFYK 340

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
           HESCG+CTPCREG+ W+++ +  L  G  Q+ ++D L +V  N+  ++ C L D     I
Sbjct: 341 HESCGKCTPCREGSWWLVQTLRNLEAGKGQEGDVDKLLDVCDNVSMKSFCTLADGFVACI 400

Query: 402 QGLIKNFRPLIE 413
              IK+FR   E
Sbjct: 401 TSAIKHFRSEFE 412


>gi|182436772|ref|YP_001824491.1| putative NADH dehydrogenase chain F [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465288|dbj|BAG19808.1| putative NADH dehydrogenase chain F [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 460

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/389 (50%), Positives = 256/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 44  YEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 102

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L  AV E Y +G 
Sbjct: 103 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGY 162

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG+N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 163 LGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 222

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 223 VNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 282

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 283 M-SGGMRAG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 339

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  ++D L +++ NI G
Sbjct: 340 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMADLDKLNDIADNING 399

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ I
Sbjct: 400 KSFCALGDGAASPIFSSLKYFREEYEQHI 428


>gi|239943481|ref|ZP_04695418.1| putative NADH dehydrogenase chain F [Streptomyces roseosporus NRRL
           15998]
 gi|239989935|ref|ZP_04710599.1| putative NADH dehydrogenase chain F [Streptomyces roseosporus NRRL
           11379]
 gi|291446952|ref|ZP_06586342.1| NADH dehydrogenase I chain F [Streptomyces roseosporus NRRL 15998]
 gi|291349899|gb|EFE76803.1| NADH dehydrogenase I chain F [Streptomyces roseosporus NRRL 15998]
          Length = 459

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/389 (50%), Positives = 256/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 43  YEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 101

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L  AV E Y +G 
Sbjct: 102 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGY 161

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG+N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 162 LGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 221

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 222 VNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 281

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 282 M-SGGMRAG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 338

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  ++D L +++ NI G
Sbjct: 339 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMADLDKLNDIADNING 398

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ I
Sbjct: 399 KSFCALGDGAASPIFSSLKYFREEYEQHI 427


>gi|320009199|gb|ADW04049.1| NADH-quinone oxidoreductase, F subunit [Streptomyces flavogriseus
           ATCC 33331]
          Length = 457

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/389 (50%), Positives = 256/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 43  YEGLRKALAMEPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 101

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L  AV E Y +G 
Sbjct: 102 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGY 161

Query: 149 LGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG+N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 162 LGTNVLGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 221

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 222 VNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 281

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GGIR G   L    PGGSS P     +     +DY+G+   GS LGT A+   D +T
Sbjct: 282 M-SGGIREG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 338

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  Q  ++D L +++ NI G
Sbjct: 339 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMADLDKLNDIADNING 398

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ I
Sbjct: 399 KSFCALGDGAASPIFSSLKYFREEYEQHI 427


>gi|326777367|ref|ZP_08236632.1| NADH-quinone oxidoreductase, F subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|326657700|gb|EGE42546.1| NADH-quinone oxidoreductase, F subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 459

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/389 (50%), Positives = 256/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 43  YEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 101

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L  AV E Y +G 
Sbjct: 102 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGY 161

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG+N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 162 LGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 221

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 222 VNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 281

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 282 M-SGGMRAG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 338

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  ++D L +++ NI G
Sbjct: 339 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMADLDKLNDIADNING 398

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ I
Sbjct: 399 KSFCALGDGAASPIFSSLKYFREEYEQHI 427


>gi|331699307|ref|YP_004335546.1| NADH-quinone oxidoreductase subunit F [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953996|gb|AEA27693.1| NADH-quinone oxidoreductase, F subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 450

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/373 (52%), Positives = 251/373 (67%), Gaps = 7/373 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---DRPHYLVVNADESEPGTCKDRDI 97
           D +IN VK SGLRGRGGAGF TGMKWSF+P+  +    +P YLV+NADE EPGTCKD   
Sbjct: 54  DQLINLVKDSGLRGRGGAGFPTGMKWSFIPQGPTGAGAKPKYLVINADEGEPGTCKDIPT 113

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLG 156
           M  +PH+LIEGCVI S+AI A+   IYVRGE +     L+ AV+E YA G LG +    G
Sbjct: 114 MMADPHSLIEGCVITSYAIRANFCAIYVRGEALHCIRRLRRAVEEAYAKGYLGRDILGSG 173

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           +D+DI+VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA  GLY  PT VNNVE+IA 
Sbjct: 174 FDLDIVVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPATSGLYASPTVVNNVETIAS 233

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           VP I+  G++W+   G E + G K++S+SGHV  P   E  +  T  EL+E   GG++ G
Sbjct: 234 VPDIVAGGSAWFRTMGTERSPGPKIYSLSGHVERPGQYEAPLGTTLRELLEL-AGGMKDG 292

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L    PGGSS P   A  +    +D++G    GS LGT AV + + +  +  A+ + 
Sbjct: 293 IP-LKFWTPGGSSTPLFTAEHLD-VPLDFEGAAAAGSMLGTTAVQIFNETVSVPWAVMKW 350

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
           + FYKHESCG+CTPCREGT W+++++ER+V G     ++D + ++  NI GR+ CALGD 
Sbjct: 351 TEFYKHESCGKCTPCREGTYWLVQILERMVHGEGTPEDVDTMLDICDNILGRSFCALGDG 410

Query: 397 AAWPIQGLIKNFR 409
           A  PI   IK FR
Sbjct: 411 ATSPITSAIKYFR 423


>gi|294814399|ref|ZP_06773042.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442789|ref|ZP_08217523.1| NADH dehydrogenase I chain F [Streptomyces clavuligerus ATCC 27064]
 gi|294326998|gb|EFG08641.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus
           ATCC 27064]
          Length = 458

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 50  YQGLRKALAMAPDDLIAHVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 108

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG +IA +AI ++ AFIY+RGE +     L  AV E Y +G 
Sbjct: 109 PGTCKDIPLLFANPHSLIEGMIIACWAIRSNHAFIYLRGEVVPVLRRLHEAVREAYEAGY 168

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 169 LGRNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 228

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL RG  W+   G + + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 229 VNNVESIASVPAILHRGKDWFRSMGSDKSAGFTLYSLSGHVASPGQYEAPLGITLRQLLD 288

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P L    +    +DY+G+   GS LGT A+   D +T
Sbjct: 289 M-SGGMRPG-HRLKFWTPGGSSTPLLTEEHLD-VPLDYEGVAAAGSMLGTKALQCFDETT 345

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++D L +++ NI G
Sbjct: 346 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEDGKGAPADLDKLADIADNING 405

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ CALGD AA PI   ++ FR   E  +D
Sbjct: 406 KSFCALGDGAASPIFSSLRYFRAEYEAHLD 435


>gi|169629225|ref|YP_001702874.1| NADH-quinone oxidoreductase, F subunit NuoF [Mycobacterium
           abscessus ATCC 19977]
 gi|169241192|emb|CAM62220.1| NADH-quinone oxidoreductase, F subunit NuoF [Mycobacterium
           abscessus]
          Length = 434

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/401 (51%), Positives = 266/401 (66%), Gaps = 5/401 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L   +  G +  +   L    D +I  VK +GLRGRGGAGF TG KWSF+P+    +PH
Sbjct: 21  TLDGYLRHGGYRGLRTALGMDPDAVIALVKEAGLRGRGGAGFPTGAKWSFIPQ-GDGKPH 79

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD  +M   PHTLIEG VIA+FAI A  AFIYVRGE I     L A
Sbjct: 80  YLVVNADESEPGTCKDIPLMLATPHTLIEGIVIAAFAIRASQAFIYVRGEVISVIRRLHA 139

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV + Y +G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA
Sbjct: 140 AVAQAYKAGYLGRNILDSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPA 199

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLY  PT VNNVESIA VP ILRRGA W+   G E + G  L+S+SGHV  P   E  
Sbjct: 200 VAGLYASPTVVNNVESIASVPVILRRGAEWFRTMGTEKSPGFTLYSLSGHVRTPGQYEAP 259

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           + +T  +L+E   GG+R G   L    PGGSS P   A Q+    +DY+G+   GS LGT
Sbjct: 260 LGVTLRQLLEL-AGGVRDG-RALKFWTPGGSSTPLFTAEQLD-VPLDYEGVSAAGSMLGT 316

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A+ + D +T +++A+ R + FY HESCG+CTPCREGT W++R+++RL  G  +  ++D 
Sbjct: 317 KALQIFDDTTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVRILQRLESGEGKAEDLDK 376

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L ++S  + G++ CALGD AA PI   +K FR   E  +D 
Sbjct: 377 LLDISDIVLGKSFCALGDGAASPIMSSLKYFRTEYEAHLDN 417


>gi|195583606|ref|XP_002081608.1| GD25625 [Drosophila simulans]
 gi|194193617|gb|EDX07193.1| GD25625 [Drosophila simulans]
          Length = 481

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/423 (44%), Positives = 259/423 (61%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W    ++LE+G +WI+ ++  SGLRGRGGAGF 
Sbjct: 58  LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQISISGLRGRGGAGFY 117

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            G+KW F+ +  S++ P  ++VN  E EPGTCKDR+I+RHEPH LIEG ++   A+G   
Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDREILRHEPHKLIEGILLVGVAMGCGR 177

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG++    G   D++V  G   Y+CGEETA++
Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSKWWAGLGRSYNTGT 296

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ +SG VN PCTVEE MSI   +LIE+H GG++GGW+NL AV PGG S P L      
Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWNNLAAVFPGGLSTPLLDPSTSG 356

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 476

Query: 419 YHR 421
           Y +
Sbjct: 477 YAK 479


>gi|254391142|ref|ZP_05006349.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704836|gb|EDY50648.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus
           ATCC 27064]
          Length = 456

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 48  YQGLRKALAMAPDDLIAHVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 106

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG +IA +AI ++ AFIY+RGE +     L  AV E Y +G 
Sbjct: 107 PGTCKDIPLLFANPHSLIEGMIIACWAIRSNHAFIYLRGEVVPVLRRLHEAVREAYEAGY 166

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 167 LGRNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 226

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL RG  W+   G + + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 227 VNNVESIASVPAILHRGKDWFRSMGSDKSAGFTLYSLSGHVASPGQYEAPLGITLRQLLD 286

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P L    +    +DY+G+   GS LGT A+   D +T
Sbjct: 287 M-SGGMRPG-HRLKFWTPGGSSTPLLTEEHLD-VPLDYEGVAAAGSMLGTKALQCFDETT 343

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++D L +++ NI G
Sbjct: 344 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEDGKGAPADLDKLADIADNING 403

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ CALGD AA PI   ++ FR   E  +D
Sbjct: 404 KSFCALGDGAASPIFSSLRYFRAEYEAHLD 433


>gi|195334585|ref|XP_002033958.1| GM20146 [Drosophila sechellia]
 gi|194125928|gb|EDW47971.1| GM20146 [Drosophila sechellia]
          Length = 481

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/423 (44%), Positives = 259/423 (61%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W    ++LE+G +WI+ ++  SGLRGRGGAGF 
Sbjct: 58  LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQISISGLRGRGGAGFY 117

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            G+KW F+ +  S++ P  ++VN  E EPGTCKDR+I+RHEPH LIEG ++   A+G   
Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDREILRHEPHKLIEGILLVGVAMGCGR 177

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG++    G   D++V  G   Y+CGEETA++
Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSKWWAGLGRSYNTGT 296

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ +SG VN PCTVEE MSI   +LIE+H GG++GGW+NL AV PGG S P L      
Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWNNLAAVFPGGLSTPLLDPSTSG 356

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 476

Query: 419 YHR 421
           Y +
Sbjct: 477 YAK 479


>gi|290958255|ref|YP_003489437.1| NADH dehydrogenase subunit NuoF [Streptomyces scabiei 87.22]
 gi|260647781|emb|CBG70886.1| NuoF, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
          Length = 452

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/389 (50%), Positives = 254/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 42  YEGLRKALAMSPDDVIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 100

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+L+EG +IA +AI +  AFIY+RGE +     L  AV E Y +G 
Sbjct: 101 PGTCKDIPLLFANPHSLVEGMIIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGF 160

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 161 LGENILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 220

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E  + IT  +L+E
Sbjct: 221 VNNVESIASVPAILHKGKEWFRSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLE 280

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P     +     +DY+G+   GS LGT A+   D +T
Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 337

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++D L +++ NI G
Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDLDKLNDIADNING 397

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ I
Sbjct: 398 KSFCALGDGAASPIFSSLKYFRAEYEDHI 426


>gi|284992920|ref|YP_003411474.1| NADH-quinone oxidoreductase subunit F [Geodermatophilus obscurus
           DSM 43160]
 gi|284066165|gb|ADB77103.1| NADH-quinone oxidoreductase, F subunit [Geodermatophilus obscurus
           DSM 43160]
          Length = 442

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/378 (51%), Positives = 250/378 (66%), Gaps = 12/378 (3%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--------CSDRPHYLVVNADESEPGTC 92
           D ++  VK SGLRGRGGAGF TGMKWSF+P+          +  P YLVVNADE EPGTC
Sbjct: 40  DELVGMVKDSGLRGRGGAGFPTGMKWSFIPQPKPGETPTGPAALPKYLVVNADEGEPGTC 99

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
           KD  +M  +PH+L+EG VIAS+AI +H A IYVRGE +     L  AV E Y +G LG++
Sbjct: 100 KDLPLMMADPHSLVEGVVIASYAIRSHLAVIYVRGEAVHAHRRLVNAVREAYEAGYLGTD 159

Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
               GYD+++IVH GAGAYICGEETALL+SLEG +GQPRLKPPFPA  GLYG PT +NNV
Sbjct: 160 ILGSGYDLELIVHAGAGAYICGEETALLDSLEGYRGQPRLKPPFPAVAGLYGAPTVINNV 219

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++A VP ++R G+ W+  FG E + G K++S+SG V  P   E  M  T  EL+E   G
Sbjct: 220 ETLASVPFVVRGGSDWFKEFGPERSPGPKIYSLSGRVVRPGQYEAPMGTTMRELLEM-AG 278

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G + L    PGGSS P      +    +D+D +   GS LGT A++V D +  I++
Sbjct: 279 GVRPGHE-LKFWTPGGSSTPYFTPEHLD-VPLDFDSVAAAGSMLGTTALMVFDETDSIVE 336

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           A  R + FY HESCG+CTPCREGT W+++V++RLV G     ++DLL +   NI GR+ C
Sbjct: 337 ATLRFTEFYAHESCGKCTPCREGTYWLVQVLQRLVDGRGTAADLDLLTDTCDNILGRSFC 396

Query: 392 ALGDAAAWPIQGLIKNFR 409
           ALGD A   I   +K FR
Sbjct: 397 ALGDGATSCISSSLKYFR 414


>gi|258593430|emb|CBE69769.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           (NDH-1, chain F) [NC10 bacterium 'Dutch sediment']
          Length = 427

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/425 (48%), Positives = 278/425 (65%), Gaps = 10/425 (2%)

Query: 5   QDRIFTNLYGLQGK--SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
            ++I T  + + G   +L +  + G +  + K+L E     +I  VK SGLRGRGGAGF 
Sbjct: 2   SEKILTKRFEIPGYRGTLDEYEATGGYQAIAKVLKEHTPTSLIELVKRSGLRGRGGAGFP 61

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW F+PK  SD P YLV NADESEPGT KDR+++  +PH L+EG ++  FAIG   A
Sbjct: 62  TGVKWGFVPK-GSDLPKYLVCNADESEPGTFKDRELIMRDPHQLLEGILLGGFAIGCRAA 120

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179
           +IY+RGE +     L+ AV +  A GL+G +  LG  + +D+ VH GAGAYICGEETALL
Sbjct: 121 YIYIRGELVAGARILEQAVSDAAARGLVGKDI-LGSRFSLDLHVHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PRLKPPFPA  GLY  PT VNNVE++  +P I+ RGA W++G G   + GT
Sbjct: 180 ESLEGKRGLPRLKPPFPATSGLYRKPTVVNNVETLCNIPHIVMRGAEWFAGIGTPKSTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           ++F +SGHV  P   E  + +   ELI +H GGIR G   L AVIPGGSSVP L    + 
Sbjct: 240 RIFGVSGHVRRPGIYECRIDVPMRELIFEHAGGIREG-RRLKAVIPGGSSVPVLTERHL- 297

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD++ L   GS  G+  VIVMD +T +++    +S FY HESCGQCT CREGT W+ 
Sbjct: 298 DARMDFESLATAGSMAGSGGVIVMDDTTCMVRVGEIVSRFYHHESCGQCTQCREGTAWLH 357

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + + R+ +G  ++ ++DLL ++  N++G+TIC L DAAA PI+  +K FR   E+ I + 
Sbjct: 358 KTLRRIEEGRGRQADLDLLLDICDNMKGKTICPLSDAAAMPIESYLKYFRDEFEQHIVE- 416

Query: 420 HRCNF 424
           H C F
Sbjct: 417 HACPF 421


>gi|29831385|ref|NP_826019.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680]
 gi|29608500|dbj|BAC72554.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 449

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/402 (50%), Positives = 261/402 (64%), Gaps = 7/402 (1%)

Query: 18  KSLSDSMSRGH--WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           KS +  + R H  ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 29  KSWTLDVYRRHEGYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 87

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 88  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMVIACYAIRSSHAFIYLRGEVVPVLRR 147

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E YA+G LG N    G D++I VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 148 LHEAVREAYAAGYLGKNILGSGLDLEITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 207

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   
Sbjct: 208 FPAVAGLYACPTVVNNVESIASVPAILHKGKEWFRSMGSEKSPGFTLYSLSGHVASPGQY 267

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   GG+R G   L    PGGSS P     +     +DY+G+   GS 
Sbjct: 268 EAPLGITLRQLLDM-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSM 324

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     +
Sbjct: 325 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMTD 384

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +D L +++ NI G++ CALGD AA PI   +K FR   E+ I
Sbjct: 385 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHI 426


>gi|302559102|ref|ZP_07311444.1| NADH oxidoreductase (quinone), F subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302476720|gb|EFL39813.1| NADH oxidoreductase (quinone), F subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 449

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/389 (50%), Positives = 254/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 42  YEGLRKALAMSPDDVIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 100

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L  AV E   +G 
Sbjct: 101 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAREAGF 160

Query: 149 LGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 161 LGENVLGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 220

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP I+ RG  W+   G E + G  L+S+SGHV  P   E  + IT  +L+E
Sbjct: 221 VNNVESIASVPAIMNRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLE 280

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P     +     +DY+G+   GS LGT A+   D +T
Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 337

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  Q  ++D L +++ NI G
Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMADLDKLNDIADNING 397

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   EE I
Sbjct: 398 KSFCALGDGAASPIFSSLKYFREEYEEHI 426


>gi|282860724|ref|ZP_06269790.1| NADH-quinone oxidoreductase, F subunit [Streptomyces sp. ACTE]
 gi|282564460|gb|EFB69996.1| NADH-quinone oxidoreductase, F subunit [Streptomyces sp. ACTE]
          Length = 457

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/389 (50%), Positives = 256/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 43  YEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 101

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L  AV E Y +G 
Sbjct: 102 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGY 161

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG+N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 162 LGANILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 221

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 222 VNNVESIASVPAILNRGKDWFKSMGSEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLD 281

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P     +     +DY+G+   GS LGT A+   D +T
Sbjct: 282 M-SGGMRAG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 338

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  ++D L +++ NI G
Sbjct: 339 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMADLDKLNDIADNING 398

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ +
Sbjct: 399 KSFCALGDGAASPIFSSLKYFREEYEQHV 427


>gi|269955282|ref|YP_003325071.1| NADH-quinone oxidoreductase subunit F [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303963|gb|ACZ29513.1| NADH-quinone oxidoreductase, F subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 448

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/408 (49%), Positives = 255/408 (62%), Gaps = 6/408 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL   ++   ++ + K L      I+  VK SGLRGRGGAGF TGMKW F+P     +P 
Sbjct: 19  SLDTYLAHDGYEGLRKALTMAPADIVAAVKESGLRGRGGAGFPTGMKWGFLPPD-DGKPR 77

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD  +M   P  L+EG  I S AI  H AFIYVRGE +     + A
Sbjct: 78  YLVVNADESEPGTCKDIPLMMASPQHLVEGVAITSVAINCHHAFIYVRGEVLHVYRRVLA 137

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV E Y +G LG +    G+D+D+ VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA
Sbjct: 138 AVQEAYDAGYLGKDILGSGFDLDVTVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPA 197

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLY  PT VNNVESIA VP+I+R GA+W++  G E ++G  LFS+SGHV  P   E  
Sbjct: 198 VEGLYARPTVVNNVESIASVPSIVRNGAAWFASMGTEKSQGMGLFSLSGHVTRPGQYEAP 257

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           + IT  EL++   GGIR G   L    PGGSS P      +    +DY+ +    S LGT
Sbjct: 258 LGITLRELLDM-AGGIRAG-HTLKFWTPGGSSTPMFTDAHLD-VPLDYESVGAAKSMLGT 314

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A+ + D +T +++A  R   FY HESCG+CTPCREGT WM +V+ R+  G     +++L
Sbjct: 315 RALQIFDETTCVVRATSRWMDFYAHESCGKCTPCREGTFWMKQVLARIEAGGGVDGDLEL 374

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           L ++  NI GR  CALGD A  P+   I+ FR   +  ID  H C F 
Sbjct: 375 LVDLCDNILGRAFCALGDGATSPVTSSIELFRDEYQAHIDG-HACPFD 421


>gi|159899603|ref|YP_001545850.1| NADH-quinone oxidoreductase subunit F [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892642|gb|ABX05722.1| NADH-quinone oxidoreductase, F subunit [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 422

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/379 (51%), Positives = 253/379 (66%), Gaps = 4/379 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+EVK SGLRGRGGAGF TG+KWSF+PK  +  P YLVVNADESEPGT  + +I+   P
Sbjct: 47  IIDEVKKSGLRGRGGAGFPTGVKWSFVPKELN--PKYLVVNADESEPGTFNNHEIIDENP 104

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG VI++FAIGA+ A+IY+RGEF      L+  + E  A GL+G N    GYDV+I
Sbjct: 105 HQLLEGIVISAFAIGANVAYIYIRGEFAYGARFLEQKIAEARARGLIGKNLFGTGYDVEI 164

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAGAYICGEETALLESLEGK GQPRLKPPFPA  GLY  PT VNNVE++  VP I+
Sbjct: 165 YVHRGAGAYICGEETALLESLEGKIGQPRLKPPFPAVAGLYAKPTVVNNVETLTNVPRII 224

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +GA W+  FG E + GTK  SISGHV  P   E  + IT  E I    GG+R     L 
Sbjct: 225 EKGADWFRSFGTEKSPGTKAVSISGHVKKPGNYEIPLGITIREFIFDWAGGMRDPNLPLK 284

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
            +IPGG+S   L   Q     M +D +   G+ LG+ A++V+D S  +++A  ++  F+K
Sbjct: 285 FIIPGGASSNWL-TEQHLDLPMTWDDMAAAGTMLGSGAMVVLDTSVPVVRAALKVDEFFK 343

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
           HESCG+C+PCREGT ++++V ER+ +G  +  +I+LL +V K + G+  C LGD++   +
Sbjct: 344 HESCGKCSPCREGTHFLVKVWERIDEGHGRVGDIELLADVGKQMLGKCFCPLGDSSVSAV 403

Query: 402 QGLIKNFRPLIEERIDQYH 420
              IK FRP ++  ID  H
Sbjct: 404 NSAIKFFRPELDAAIDAQH 422


>gi|218515777|ref|ZP_03512617.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli
           8C-3]
          Length = 446

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/421 (47%), Positives = 263/421 (62%), Gaps = 8/421 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+    G  LS   + G +  + K+L E   D +I+ VK S LRGRGGAGF TGMKW
Sbjct: 31  LLKNVDVRDGHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTGMKW 90

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F+PK  + +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++Y+R
Sbjct: 91  GFVPKR-TGKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIR 149

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV--HHGAGAYICGEETALLESLEG 184
           GE++     L+ A+ E +A G LG    LG D +  V  H GAGAYICGEETA+LESLEG
Sbjct: 150 GEYVTAIRRLEQAIAEAHAKGYLGKRI-LGSDFNFAVRIHCGAGAYICGEETAMLESLEG 208

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RGA W+ G G E + G KL+ +
Sbjct: 209 KRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPEKSPGPKLYCL 268

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  M I   EL+E H GG+  G   + AVIPGG S P +P   +    MD
Sbjct: 269 SGQVRKPGLYELPMGIALRELVENHAGGVLPG-RRIKAVIPGGVSAPVIPEHGLEVG-MD 326

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D L   GS LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W+++V+ R
Sbjct: 327 FDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIVEFFHHESCGKCTPCREGLNWVVKVLRR 386

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +  G     +++ L  + K I G T CALGD AA  ++  + +FR      ID  HRC F
Sbjct: 387 IEAGDGAPGDLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHIDD-HRCPF 445

Query: 425 Q 425
            
Sbjct: 446 H 446


>gi|329935992|ref|ZP_08285792.1| NADH dehydrogenase subunit NuoF [Streptomyces griseoaurantiacus
           M045]
 gi|329304470|gb|EGG48348.1| NADH dehydrogenase subunit NuoF [Streptomyces griseoaurantiacus
           M045]
          Length = 462

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/389 (50%), Positives = 254/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 54  YEGLRKALAMSPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 112

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L  AV E YA+G 
Sbjct: 113 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGY 172

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG +    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 173 LGKDILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 232

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL+ G  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 233 VNNVESIASVPAILKNGKDWFRSMGSEKSPGFTLYSLSGHVTSPGQYEAPLGITLRQLLD 292

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 293 M-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 349

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++D L +++ NI G
Sbjct: 350 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDLDKLNDIADNING 409

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +  CALGD AA PI   +K FR   EE I
Sbjct: 410 KAFCALGDGAASPIFSSLKYFRAEYEEHI 438


>gi|314925995|gb|EFS89826.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA3]
          Length = 444

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/389 (48%), Positives = 259/389 (66%), Gaps = 5/389 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  P YLVVN D
Sbjct: 27  QGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +Q AV E Y+
Sbjct: 86  ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRVQQAVREAYS 145

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G +G N    GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  
Sbjct: 146 AGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVESI+ VP+ILR G  W+   G E + G  ++S+SGH+ +P   E  M  T  +
Sbjct: 206 PTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYEAPMGTTLRQ 265

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L++   GG+R G + L    PGGSS P L    +    +DY+G+    + LGT A+   D
Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G +Q+ ++D L +++ N
Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGESQEGDVDKLMDIADN 382

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I GR+ CAL D A   ++G I +FR   E
Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411


>gi|298246355|ref|ZP_06970161.1| NADH-quinone oxidoreductase, F subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297553836|gb|EFH87701.1| NADH-quinone oxidoreductase, F subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 443

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/398 (48%), Positives = 260/398 (65%), Gaps = 9/398 (2%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G ++ + K L+   D I+ E+K SGLRGRGGAGF TGMKWSF+ K  +D+P YL  N+DE
Sbjct: 27  GGYEALAKALKSEPDQIVEEIKKSGLRGRGGAGFPTGMKWSFLAK--NDKPRYLCCNSDE 84

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           SEPGT KDR +M   PH L+EG +I S+A     AFIY+RGE     + +Q AVDE Y +
Sbjct: 85  SEPGTFKDRMLMERNPHLLVEGVLITSYACRVKTAFIYIRGELPYAADQVQRAVDEAYEA 144

Query: 147 GLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           GL+GSN  LG  Y +D+IVH GAGAYICGEE+AL+ESLEG++G PRLKPPFPA VGLYG 
Sbjct: 145 GLIGSNI-LGSDYSIDVIVHRGAGAYICGEESALMESLEGRRGYPRLKPPFPAVVGLYGG 203

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NN E++  VP I+ +G  +Y+ FG E ++GT++F +SGHV  P   E ++ I    
Sbjct: 204 PTVINNCETLCTVPAIIEQGGEYYASFGTEKSKGTRIFGLSGHVKKPGNYEVALGIPLRT 263

Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
           L+  E++ GGI      + AVIPGGSS   L   ++    MDY+ +   GS LG+  VIV
Sbjct: 264 LLYDEQYGGGILNDR-QVKAVIPGGSSTFFLGPDKLD-IPMDYESVAAAGSMLGSGGVIV 321

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           ++  T I+  I R   FY+ ESCG+CTPCREGT W+  ++ERL  G  + ++IDLL  + 
Sbjct: 322 INDETCIVGTIARAVEFYRDESCGKCTPCREGTYWLTELLERLEHGHGKMKDIDLLTSIC 381

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            NI G++ C LGDAA   I   ++ FR   E  +   H
Sbjct: 382 GNISGKSFCPLGDAATSLITSGVRMFREEFEYHVTHGH 419


>gi|50843381|ref|YP_056608.1| NADH dehydrogenase I chain F [Propionibacterium acnes KPA171202]
 gi|289425637|ref|ZP_06427409.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           SK187]
 gi|289426990|ref|ZP_06428709.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           J165]
 gi|50840983|gb|AAT83650.1| NADH dehydrogenase I chain F [Propionibacterium acnes KPA171202]
 gi|289153938|gb|EFD02631.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           SK187]
 gi|289159812|gb|EFD07997.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           J165]
 gi|313763289|gb|EFS34653.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL013PA1]
 gi|313793603|gb|EFS41643.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA1]
 gi|313802886|gb|EFS44099.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA2]
 gi|313806332|gb|EFS44848.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA2]
 gi|313813679|gb|EFS51393.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL025PA1]
 gi|313814971|gb|EFS52685.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL059PA1]
 gi|313819443|gb|EFS57157.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL046PA2]
 gi|313821249|gb|EFS58963.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA1]
 gi|313822296|gb|EFS60010.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA2]
 gi|313826146|gb|EFS63860.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL063PA1]
 gi|313829365|gb|EFS67079.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL063PA2]
 gi|313838154|gb|EFS75868.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL086PA1]
 gi|314916743|gb|EFS80574.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA4]
 gi|314919131|gb|EFS82962.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA1]
 gi|314921211|gb|EFS85042.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA3]
 gi|314930361|gb|EFS94192.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL067PA1]
 gi|314956144|gb|EFT00540.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL027PA1]
 gi|314959677|gb|EFT03779.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA1]
 gi|314962251|gb|EFT06352.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA2]
 gi|314963235|gb|EFT07335.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL082PA1]
 gi|314969778|gb|EFT13876.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA1]
 gi|314979336|gb|EFT23430.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL072PA2]
 gi|314986332|gb|EFT30424.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA2]
 gi|314988571|gb|EFT32662.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA3]
 gi|315079688|gb|EFT51676.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL053PA2]
 gi|315083921|gb|EFT55897.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL027PA2]
 gi|315085058|gb|EFT57034.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA3]
 gi|315089487|gb|EFT61463.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL072PA1]
 gi|315098099|gb|EFT70075.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL059PA2]
 gi|315102683|gb|EFT74659.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL046PA1]
 gi|315107937|gb|EFT79913.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL030PA1]
 gi|315108825|gb|EFT80801.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL030PA2]
 gi|327325714|gb|EGE67511.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL096PA3]
 gi|327333127|gb|EGE74854.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL097PA1]
 gi|327447753|gb|EGE94407.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL013PA2]
 gi|327451636|gb|EGE98290.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA3]
 gi|327452289|gb|EGE98943.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL083PA2]
 gi|327452506|gb|EGE99160.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL092PA1]
 gi|328752122|gb|EGF65738.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL025PA2]
 gi|328755066|gb|EGF68682.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL020PA1]
 gi|328757014|gb|EGF70630.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA1]
 gi|332676324|gb|AEE73140.1| NADH-quinone oxidoreductase subunit F [Propionibacterium acnes 266]
          Length = 444

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/389 (48%), Positives = 258/389 (66%), Gaps = 5/389 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  P YLVVN D
Sbjct: 27  QGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +Q AV E Y+
Sbjct: 86  ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRVQQAVREAYS 145

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G +G N    GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  
Sbjct: 146 AGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVESI+ VP+ILR G  W+   G E + G  ++S+SGH+ +P   E  M  T  +
Sbjct: 206 PTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYEAPMGTTLRQ 265

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L++   GG+R G + L    PGGSS P L    +    +DY+G+    + LGT A+   D
Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++D L +++ N
Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLMDIADN 382

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I GR+ CAL D A   ++G I +FR   E
Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411


>gi|332883539|gb|EGK03822.1| NADH oxidoreductase, F subunit [Dysgonomonas mossii DSM 22836]
          Length = 451

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/404 (48%), Positives = 267/404 (66%), Gaps = 16/404 (3%)

Query: 27  GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           G + +V+K L+    D ++ EVK SG+RGRGGAGF  G+KWSF+ K  S +P +LVVNAD
Sbjct: 25  GGYASVEKALKTMTPDEVVEEVKTSGVRGRGGAGFPMGLKWSFIDKK-SGKPRHLVVNAD 83

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGT KDR +M H PH LIEG +++S+A+ A+ ++IY+RGE++   + L+ A+ E YA
Sbjct: 84  ESEPGTFKDRFLMHHIPHLLIEGAIVSSYALEANLSYIYIRGEYMWIFKILEKAIKEAYA 143

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG N    GY++D+ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA  GL+G 
Sbjct: 144 NGWLGKNILGTGYNLDLYVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAVSGLWGE 203

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT VNNVESI+ V  I+  G + Y+  G   + GTKL S SGH+  P   E  + +T DE
Sbjct: 204 PTVVNNVESISTVSWIINNGGAEYAKIGVGKSTGTKLMSASGHIKNPGVYEIELGLTVDE 263

Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM------RGAIMDYDGLKE----MG 312
               +++CGG+      L AVIPGG SVP LP   +         ++ Y+ L +     G
Sbjct: 264 FFNSDEYCGGMLDD-RPLKAVIPGGCSVPILPPQYIFKTANGEDRLISYESLADGGFVTG 322

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+   IV + +  I++  W  S F+ HESCGQC+PCREGTGWM +++ R+  G  ++
Sbjct: 323 SSLGSGGFIVYNDTACIVRNTWNFSRFFHHESCGQCSPCREGTGWMDKILHRIETGQGRE 382

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +IDLL+ +   IEG TIC LGDAA+WP+   I++FR   E  +
Sbjct: 383 EDIDLLWSIQSKIEGNTICPLGDAASWPVAAAIRHFREEFEYHV 426


>gi|282855269|ref|ZP_06264601.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           J139]
 gi|282581857|gb|EFB87242.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           J139]
 gi|314923989|gb|EFS87820.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL001PA1]
 gi|314965053|gb|EFT09152.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL082PA2]
 gi|314983073|gb|EFT27165.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA3]
 gi|315090606|gb|EFT62582.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA4]
 gi|315093907|gb|EFT65883.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL060PA1]
 gi|315104126|gb|EFT76102.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA2]
          Length = 444

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/389 (48%), Positives = 258/389 (66%), Gaps = 5/389 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  P YLVVN D
Sbjct: 27  QGGYAGLRKALTMPPDEVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +Q AV E Y+
Sbjct: 86  ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKAAFIYIRGEVLHVVRRVQQAVREAYS 145

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G +G N    GYD++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  
Sbjct: 146 AGYIGKNILGSGYDLEVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVESI+ VP+ILR G  W+   G E + G  ++S+SGH+ +P   E  M  T  +
Sbjct: 206 PTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLTHPGQYEAPMGTTLRQ 265

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L++   GG+R G + L    PGGSS P L    +    +DY+G+    + LGT A+   D
Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++D L +++ N
Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLMDIADN 382

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I GR+ CAL D A   ++G I +FR   E
Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411


>gi|327325781|gb|EGE67573.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL103PA1]
          Length = 444

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/389 (48%), Positives = 258/389 (66%), Gaps = 5/389 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  P YLVVN D
Sbjct: 27  QGGYAGLRKALTMPPDEVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +Q AV E Y+
Sbjct: 86  ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKAAFIYIRGEVLHVVRRVQQAVREAYS 145

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G +G N    GYD++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  
Sbjct: 146 AGYIGKNILGSGYDLEVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVESI+ VP+ILR G  W+   G E + G  ++S+SGH+ +P   E  M  T  +
Sbjct: 206 PTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLTHPGQYEAPMGTTLRQ 265

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L++   GG+R G + L    PGGSS P L    +    +DY+G+    + LGT A+   D
Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++D L +++ N
Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLMDIADN 382

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I GR+ CAL D A   ++G I +FR   E
Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411


>gi|332830193|gb|EGK02821.1| NADH oxidoreductase, F subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 457

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/404 (48%), Positives = 265/404 (65%), Gaps = 16/404 (3%)

Query: 27  GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           G + +V+K L+    D ++ +VK SG+RGRGGAGF  GMKWSF+ K  S +P +LVVNAD
Sbjct: 25  GGYASVEKALKTMTPDEVVEQVKTSGMRGRGGAGFPMGMKWSFIDKK-SGKPRHLVVNAD 83

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGT KDR +M H PH LIEG +++S+A+ A+ ++IY+RGE++   + L+ A+ E YA
Sbjct: 84  ESEPGTFKDRFLMHHIPHLLIEGAIVSSYALEANLSYIYIRGEYMWIFKILEKAIKEAYA 143

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG N    GYD+D+ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA  GL+  
Sbjct: 144 NGWLGKNILGTGYDLDLYVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAVSGLWNE 203

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT VNNVESI+ V  I+  G   Y+  G   + GTKL S SGH+  P   E  + ++ DE
Sbjct: 204 PTVVNNVESISTVSWIINNGGEEYAKIGIGRSTGTKLMSASGHIKNPGVYEIELGMSVDE 263

Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM------RGAIMDYDGLKE----MG 312
               +++CGG+      L AVIPGG SVP LP   +         ++ Y+ L +     G
Sbjct: 264 FFNSDEYCGGMLDD-RPLKAVIPGGCSVPILPPQYIFKTANGEDRLLSYESLSDGGFVTG 322

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+   IV + +  I++  W  S F+ HESCGQC+PCREGTGWM +++ R+  G  ++
Sbjct: 323 SSLGSGGFIVYNDTACIVRNTWNFSRFFHHESCGQCSPCREGTGWMDKILHRIETGFGRE 382

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +IDLL+ +   IEG TIC LGDAA+WP+   I++FR   E  +
Sbjct: 383 EDIDLLWSIQSKIEGNTICPLGDAASWPVAAAIRHFREEFEYHV 426


>gi|315445434|ref|YP_004078313.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. Spyr1]
 gi|315263737|gb|ADU00479.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. Spyr1]
          Length = 438

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/405 (50%), Positives = 271/405 (66%), Gaps = 7/405 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72
           Q  ++   +  G +  +++ L    D +I  VK SGLRGRGGAGF TG KWSF+P+    
Sbjct: 16  QPWTMDTYIRHGGYQALERALAMSPDEVIGTVKDSGLRGRGGAGFPTGTKWSFIPQGGEG 75

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            + +PHYLV+NADESEPGTCKD  +M   PH L+EG +IA++AI AH AFIY+RGE +  
Sbjct: 76  AAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRAHHAFIYLRGEVVPV 135

Query: 133 RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQAAV E YA+G LG +    G+D+++IVH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 136 LRRLQAAVAEAYAAGHLGHDIHGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRL 195

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLY CPT VNNVESIA VP IL  G  W+   G E + G  L+S+SGHV  P
Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL++ + GG+R G   L    PGGSS P L A  +    +DY+G+  +
Sbjct: 256 GQYEAPLGITLRELLD-YAGGVRAG-HELKFWTPGGSSTPLLTADHLD-VPLDYEGMAGV 312

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 313 GSMLGTKALQIFDDTTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGRGT 372

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + ++D L ++S NI G++ CALGD AA PI   +K+FR   E  +
Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRDEYEAHL 417


>gi|194754954|ref|XP_001959757.1| GF11875 [Drosophila ananassae]
 gi|190621055|gb|EDV36579.1| GF11875 [Drosophila ananassae]
          Length = 520

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/422 (46%), Positives = 258/422 (61%), Gaps = 6/422 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NLYG     L  +  RG W     ILE G DW+++++K S LRGRGGAGF 
Sbjct: 85  LKDSDRIFQNLYGRHDWRLKGACQRGDWHKTGDILELGPDWMMDQIKQSALRGRGGAGFY 144

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
              KW F+ +V S++ P  LVVN  E EPGTCKDR+I+RHEPH LIEG ++A   IG   
Sbjct: 145 CATKWEFLKQVKSEKVPKMLVVNCAEGEPGTCKDREILRHEPHKLIEGILLAGVTIGCGR 204

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178
           A IY+R  F  E  +L  A+ E Y  GL+G  +  G D+  DI++  G   Y+CGEETA+
Sbjct: 205 AIIYIRNRFYNEACNLHYALAEAYHHGLVGDGA-CGTDIKFDIMIQRG-DRYLCGEETAM 262

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L  L G+ G+PR +PPF    G +  P  V N ES++V+PT+LRRG  W++G GR  N G
Sbjct: 263 LNCLMGELGRPRRRPPFLTEKGYFNHPCLVVNAESLSVLPTLLRRGPCWWTGLGRSYNAG 322

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISG VN PCTVEE MS+   E+IE H GG++GGW+NLLAV PGG S   L     
Sbjct: 323 TKLFCISGEVNNPCTVEEEMSMPMREIIELHAGGVQGGWENLLAVFPGGLSTALLGPEAA 382

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            G +MD+D L+  GSGLG  ++IVM +  D +  + R   FY+  +C QCT CR+G  W+
Sbjct: 383 GGVMMDFDCLEAAGSGLGCGSIIVMSKKCDPLAIMHRAIEFYEEHTCKQCTYCRDGAIWL 442

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERID 417
             +  R   G A   EID    ++  I+  R ICALG + A   + +++ F   I +RI 
Sbjct: 443 PELFGRFATGQAHPHEIDWTSVIADKIKNSRPICALGVSQAITAESMVRMFSEQINQRIV 502

Query: 418 QY 419
           ++
Sbjct: 503 KF 504


>gi|229821704|ref|YP_002883230.1| NADH-quinone oxidoreductase, F subunit [Beutenbergia cavernae DSM
           12333]
 gi|229567617|gb|ACQ81468.1| NADH-quinone oxidoreductase, F subunit [Beutenbergia cavernae DSM
           12333]
          Length = 439

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/395 (50%), Positives = 253/395 (64%), Gaps = 11/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L     RG +  +++   +  + I++ VKASGLRGRGGAGF TG+KWSF+P      P 
Sbjct: 32  TLEAYRERGGYRALEEARSRKPEEIVDAVKASGLRGRGGAGFPTGLKWSFLPP-PDGGPR 90

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD  +M   PH LIEG  I S+AIG   AFIY+RGE +     L A
Sbjct: 91  YLVVNADESEPGTCKDIPLMLANPHALIEGSAITSYAIGCDHAFIYLRGEVVHVYRRLLA 150

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           AV E  A+GLLG        + I VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA 
Sbjct: 151 AVREAEAAGLLGG-------LRITVHAGAGAYICGEETALLDSLEGLRGQPRLKPPFPAV 203

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GLY  PT VNNVESIA VP+I+  G  W++  G E + G  LFS+SGHV  P   E  +
Sbjct: 204 AGLYARPTVVNNVESIASVPSIVLGGPEWFTSMGTEKSAGFGLFSLSGHVTRPGQYEAPL 263

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  EL++   GG+R G + L    PGGSS P L   +     +DY+ +   GS L T 
Sbjct: 264 GITLRELLDL-AGGVRDGHE-LKFWTPGGSSTPIL-TDEHLDVPLDYESVAGAGSMLATR 320

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +++ RL +G     ++D L
Sbjct: 321 ALQIFDETTSVVRAVARWTDFYAHESCGKCTPCREGTYWLKQILHRLEEGRGTAEDLDTL 380

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
            E++ NI GR+ CA GDAA  PIQ  +K FR   E
Sbjct: 381 DEITANIAGRSFCAFGDAAVTPIQSGMKYFRSEFE 415


>gi|313836205|gb|EFS73919.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA2]
 gi|314927640|gb|EFS91471.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL044PA1]
 gi|314971361|gb|EFT15459.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA3]
 gi|328906298|gb|EGG26073.1| NADH dehydrogenase I chain F [Propionibacterium sp. P08]
          Length = 444

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/389 (48%), Positives = 256/389 (65%), Gaps = 5/389 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           +G +  +   L    D +++ V+ + LRGRGGAGF TGMKWSF+PK  +  P YLVVN D
Sbjct: 27  QGGYTGLRHALTMQPDEVVSLVRDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +Q AV E Y+
Sbjct: 86  ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKVAFIYIRGEVLHVIRRVQQAVREAYS 145

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G +G N    GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  
Sbjct: 146 AGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVESI+ VP ILR G  W+   G E + G  ++S+SGHV +P   E  M IT  +
Sbjct: 206 PTVINNVESISTVPAILRNGKEWFKSMGTEKSDGFTIYSLSGHVAHPGQYEAPMGITLRQ 265

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L+    GG+R G + L    PGGSS P L    +    +DY+G+    + LGT A+   D
Sbjct: 266 LL-GISGGMRQGHE-LKFFTPGGSSTPILAKDDLD-LPLDYEGMAGAKTMLGTKALQCFD 322

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++D L +++ N
Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLLDIADN 382

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I GR+ CAL D A   ++G I +FR   E
Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411


>gi|255037830|ref|YP_003088451.1| NADH-quinone oxidoreductase, F subunit [Dyadobacter fermentans DSM
           18053]
 gi|254950586|gb|ACT95286.1| NADH-quinone oxidoreductase, F subunit [Dyadobacter fermentans DSM
           18053]
          Length = 446

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/398 (50%), Positives = 260/398 (65%), Gaps = 16/398 (4%)

Query: 26  RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           +G +  V+K ++    + ++ E K SG+RGRGGAGF  GMKW F+ K     P YLV NA
Sbjct: 24  QGGYTAVEKAIKTMTPEEVVEEAKKSGVRGRGGAGFPMGMKWGFLAK-PEGVPRYLVCNA 82

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT KD  +M+  PH LIEG +I+SFA+GA+ +FIYVRGE +     L+ A+ E  
Sbjct: 83  DESEPGTFKDHHLMKCIPHLLIEGMIISSFALGANKSFIYVRGELMYVIRILEKAIAEAK 142

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
           A G LG N    GYD++++V  G GAYICGEETALLESLEGK+G PR KPPFPA  GLY 
Sbjct: 143 AQGFLGKNILGSGYDLELVVQPGGGAYICGEETALLESLEGKRGNPRNKPPFPAVKGLYQ 202

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVESI+ +P I+  G   Y+  G   + GTKL S SGH+  P   E  + ++ +
Sbjct: 203 SPTVVNNVESISNMPWIINNGGDAYAQIGIGRSTGTKLISASGHIQKPGVYEIELGVSVE 262

Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-MRGA-----IMDYDGLKE----M 311
           E +  +++CGGIR G  +L A++ GGSSVP LPA   M+ A     +M Y+ L +     
Sbjct: 263 EFLNSDEYCGGIRKG-HHLKALVAGGSSVPILPANLIMKTAAGEDRLMTYESLSDGGFAT 321

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ LG+   IV D +  I++  W  S FY HESCGQC+PCREGTGWM +V+ R+  G   
Sbjct: 322 GTMLGSGGFIVFDETACIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKVLHRIEHGHGS 381

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             +IDLL ++SK IEG TIC LGDAAAWP+   I++FR
Sbjct: 382 MHDIDLLVDISKKIEGNTICPLGDAAAWPVASAIRHFR 419


>gi|118471561|ref|YP_886419.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium smegmatis
           str. MC2 155]
 gi|118172848|gb|ABK73744.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium smegmatis
           str. MC2 155]
          Length = 443

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/390 (52%), Positives = 263/390 (67%), Gaps = 12/390 (3%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD--------RPHYL 80
           +  + + L  G D +I  VK SGLRGRGGAGF TG KWSF+P+   D        +PHYL
Sbjct: 29  YQGLQRALSMGPDDVIAFVKDSGLRGRGGAGFPTGTKWSFIPQERGDQPAGGPAAKPHYL 88

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           V+NADESEPGTCKD  ++   PH L+EG +IA++AI A  AFIYVRGE +     LQAAV
Sbjct: 89  VINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRARHAFIYVRGEVLPVLRRLQAAV 148

Query: 141 DECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
            E YA+G LG++    G+D+D+IVH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  
Sbjct: 149 AEAYAAGYLGTDIMGSGFDLDLIVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVA 208

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GLY CPT VNNVESIA VP I+  G  W+   G E + G  L+S+SGHV  P   E  + 
Sbjct: 209 GLYACPTVVNNVESIASVPPIMVNGVDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLG 268

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
           IT  EL+E + GG+R G   L    PGGSS P L A  +    +DY+G+  +GS LGT A
Sbjct: 269 ITLRELLE-YAGGVRAG-HQLKFWTPGGSSTPLLTAEHLD-VPLDYEGMASVGSMLGTKA 325

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           + + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++  RL  G   + +ID L 
Sbjct: 326 LQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLENGAGTEADIDKLL 385

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++S NI G++ CALGD AA PI   IK+FR
Sbjct: 386 DISDNIFGKSFCALGDGAASPIMSSIKHFR 415


>gi|193215709|ref|YP_001996908.1| NADH-quinone oxidoreductase subunit F [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089186|gb|ACF14461.1| NADH-quinone oxidoreductase, F subunit [Chloroherpeton thalassium
           ATCC 35110]
          Length = 432

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/385 (51%), Positives = 256/385 (66%), Gaps = 7/385 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G + N+ K L    + I+ EVK SGLRGRGGAGF TGMKW F+ K    +P YL VN DE
Sbjct: 28  GGYQNLRKALVMKPEEIVGEVKKSGLRGRGGAGFPTGMKWGFVGKA---KPRYLAVNGDE 84

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           SEPG+ KDR I    PH LIEGC+I+ +A+     +IY+RGE+ +  + ++ A+ E    
Sbjct: 85  SEPGSFKDRQIFEFNPHQLIEGCLISCYALDVETCYIYIRGEYAKWIDIVETALAEARQK 144

Query: 147 GLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           G +G N  LG D   +I VH GAGAYICGEE+AL+ S+EGK+  PRLKPPFPA VGL+G 
Sbjct: 145 GYVGKNI-LGKDFSAEIYVHRGAGAYICGEESALMNSIEGKRAYPRLKPPFPAVVGLWGQ 203

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVE+I  +P I+  GA  YS  G  ++ G  L+ +SGHVN P   E    +   +
Sbjct: 204 PTVINNVETITNIPLIIEIGAEAYSKIGAPDHPGPMLYGLSGHVNKPGIYEYPSGMAITD 263

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           LI    GGIRGG   L AVIPGGSS+P L A  + G  M+ D LK+ G+ +GTA +I+MD
Sbjct: 264 LIYDIGGGIRGG-KKLKAVIPGGSSMPILRADMIEGVTMNADSLKKAGTSIGTAGMIIMD 322

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
             TDI+ AI RL+ FY HESCGQCTPCREGTGW+  + ++ ++  A+ R+IDLL  + K 
Sbjct: 323 EDTDIVAAIARLTHFYHHESCGQCTPCREGTGWIEHIYKKFLRDEAEPRDIDLLLSLCKQ 382

Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409
           IE RTICAL D AAWP++  I+ FR
Sbjct: 383 IEQRTICALADGAAWPVRFSIERFR 407


>gi|307318106|ref|ZP_07597542.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           AK83]
 gi|306896147|gb|EFN26897.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           AK83]
          Length = 421

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/421 (47%), Positives = 268/421 (63%), Gaps = 8/421 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+    G  LS   + G +  + K L E   D I+  VK S LRGRGGAGF TGMKW
Sbjct: 6   LLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTGMKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+PK  + +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++Y+R
Sbjct: 66  SFVPKA-AGKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184
           GE++     ++ A+ E + +G LG    LG D + +VH   GAGAYICGEETA+LESLEG
Sbjct: 125 GEYVTAIRRMEQAIAEAHENGYLGIGI-LGSDFNFMVHIHRGAGAYICGEETAMLESLEG 183

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG++W+ G G + + G KL+ +
Sbjct: 184 KRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVTRGSAWFRGIGPDRSPGPKLYCL 243

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  M I+  EL+E+H GG   G   + AVIPGG S P +P G++    MD
Sbjct: 244 SGQVRKPGLYELPMGISLRELVEEHAGGPLPG-RKVKAVIPGGISAPVIPEGELE-VSMD 301

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D L   GS LG+A V+V+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+ R
Sbjct: 302 FDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLRR 361

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +  G  +  +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC F
Sbjct: 362 IEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRCPF 420

Query: 425 Q 425
            
Sbjct: 421 H 421


>gi|315081016|gb|EFT52992.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL078PA1]
          Length = 444

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/389 (48%), Positives = 257/389 (66%), Gaps = 5/389 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  P YLVVN D
Sbjct: 27  QGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PH L+EG +IAS+AI A  AFIY+RGE +     +Q AV E Y+
Sbjct: 86  ESEPGTCKDMPLMMASPHILVEGVIIASYAIKAKMAFIYIRGEVLHVVRRVQQAVREAYS 145

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G +G N    GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  
Sbjct: 146 AGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVESI+ VP+ILR G  W+   G E + G  ++S+SGH+ +P   E  M  T  +
Sbjct: 206 PTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYEAPMGTTLRQ 265

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L++   GG+R G + L    PGGSS P L    +    +DY+G+    + LGT A+   D
Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++D L +++ N
Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLMDIADN 382

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I GR+ CAL D A   ++G I +FR   E
Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411


>gi|295131455|ref|YP_003582118.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           SK137]
 gi|291376367|gb|ADE00222.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           SK137]
 gi|313773335|gb|EFS39301.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL074PA1]
 gi|313810762|gb|EFS48476.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL083PA1]
 gi|313831073|gb|EFS68787.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL007PA1]
 gi|313833203|gb|EFS70917.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL056PA1]
 gi|314973943|gb|EFT18039.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL053PA1]
 gi|314976871|gb|EFT20966.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL045PA1]
 gi|314984993|gb|EFT29085.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA1]
 gi|315097694|gb|EFT69670.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL038PA1]
 gi|327330838|gb|EGE72583.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL096PA2]
 gi|327442869|gb|EGE89523.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL043PA2]
 gi|327445261|gb|EGE91915.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL043PA1]
 gi|328761550|gb|EGF75068.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL099PA1]
          Length = 444

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/389 (48%), Positives = 257/389 (66%), Gaps = 5/389 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  P YLVVN D
Sbjct: 27  QGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPK-DNPNPTYLVVNGD 85

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +Q AV E Y+
Sbjct: 86  ESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRVQQAVREAYS 145

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G +G N    GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  
Sbjct: 146 AGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYAS 205

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVESI+ VP+ILR    W+   G E + G  ++S+SGH+ +P   E  M  T  +
Sbjct: 206 PTVINNVESISTVPSILRNSKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYEAPMGTTLRQ 265

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L++   GG+R G + L    PGGSS P L    +    +DY+G+    + LGT A+   D
Sbjct: 266 LLDI-SGGMRQGHE-LKFFTPGGSSTPILTKDDID-LPLDYEGMAGAKTMLGTKALQCFD 322

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++D L +++ N
Sbjct: 323 ETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDVDKLMDIADN 382

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I GR+ CAL D A   ++G I +FR   E
Sbjct: 383 IGGRSFCALADGAVGCLRGAIGHFRDEFE 411


>gi|302536173|ref|ZP_07288515.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. C]
 gi|302445068|gb|EFL16884.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. C]
          Length = 459

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/389 (49%), Positives = 255/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 51  YEGLRKALAMTPDEVIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 109

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+L+EG +IA +AI +  AFIY+RGE +     L  AV E YA+G 
Sbjct: 110 PGTCKDIPLLFANPHSLVEGMIIACYAIRSEHAFIYLRGETVPVLRRLHEAVREAYAAGY 169

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG +    G ++DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 170 LGKDIDGTGRNLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 229

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 230 VNNVESIASVPAILNKGKDWFKAMGTEKSPGFTLYSLSGHVAGPGQYEAPLGITLRQLLD 289

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 290 M-SGGMRPG-HRLKFWTPGGSSTPMFTDEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 346

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++D L +++ NI G
Sbjct: 347 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDLDKLNDIADNING 406

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ +
Sbjct: 407 KSFCALGDGAASPIFSSLKYFREEYEQHV 435


>gi|307304399|ref|ZP_07584150.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           BL225C]
 gi|306902601|gb|EFN33195.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           BL225C]
          Length = 421

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/420 (46%), Positives = 267/420 (63%), Gaps = 6/420 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+    G  LS   + G +  + K L E   D I+  VK S LRGRGGAGF TGMKW
Sbjct: 6   LLRNIDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTGMKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+PK  + +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++Y+R
Sbjct: 66  SFVPKA-AGKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE++     ++ A+ E + +G LG      G++  + +H GAGAYICGEETA+LESLEGK
Sbjct: 125 GEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNFMVHIHRGAGAYICGEETAMLESLEGK 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           + QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG++W+ G G + + G KL+ +S
Sbjct: 185 RAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLYCLS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  M I+  EL+E+H GG   G   + AVIPGG S P +P G++    MD+
Sbjct: 245 GQVRKPGLYELPMGISLRELVEEHAGGPLPG-RKVKAVIPGGVSAPVIPEGELEVG-MDF 302

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L   GS LG+A V+V+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+ R+
Sbjct: 303 DSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLRRI 362

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             G  +  +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC F 
Sbjct: 363 EAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRCPFH 421


>gi|16263282|ref|NP_436075.1| NuoF2 NADH I chain F [Sinorhizobium meliloti 1021]
 gi|17380453|sp|P56913|NUOF2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit F 2; AltName:
           Full=NADH dehydrogenase I subunit F 2; AltName:
           Full=NDH-1 subunit F 2
 gi|14523959|gb|AAK65487.1| NuoF2 NADH:quinone oxidoreductase (chain F) [Sinorhizobium meliloti
           1021]
          Length = 421

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/420 (46%), Positives = 267/420 (63%), Gaps = 6/420 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+    G  LS   + G +  + K L E   D I+  VK S LRGRGGAGF TGMKW
Sbjct: 6   LLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTGMKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+PK  + +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++Y+R
Sbjct: 66  SFVPKA-AGKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE++     ++ A+ E + +G LG      G++  + +H GAGAYICGEETA+LESLEGK
Sbjct: 125 GEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNFMVHIHRGAGAYICGEETAMLESLEGK 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           + QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG++W+ G G + + G KL+ +S
Sbjct: 185 RAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLYCLS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  M I+  EL+E+H GG   G   + AVIPGG S P +P G++    MD+
Sbjct: 245 GQVRKPGLYELPMGISLRELVEEHAGGPLPG-RKVKAVIPGGVSAPVIPEGELEVG-MDF 302

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L   GS LG+A V+V+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+ R+
Sbjct: 303 DSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLRRI 362

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             G  +  +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC F 
Sbjct: 363 EAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRCPFH 421


>gi|5650749|emb|CAB51634.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
          Length = 421

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/422 (46%), Positives = 267/422 (63%), Gaps = 10/422 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+    G  LS   + G +  + K L E   D I+  VK S LRGRGGAGF TGMKW
Sbjct: 6   LLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTGMKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+PK  + +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++Y+R
Sbjct: 66  SFVPKA-AGKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           GE++     ++ A+ E + +G LG     SK  + V I  H GAGAYICGEETA+LESLE
Sbjct: 125 GEYVTAIRRMEQAIAEAHENGYLGVGILGSKFNFMVHI--HRGAGAYICGEETAMLESLE 182

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG++W+ G G + + G KL+ 
Sbjct: 183 GKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLYC 242

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V  P   E  M I+  EL+E+H GG   G   + AVIPGG S P +P G++    M
Sbjct: 243 LSGQVRKPGLYELPMGISLRELVEEHAGGPLPG-RKVKAVIPGGVSAPVIPEGELEVG-M 300

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D L   GS LG+A V+V+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+ 
Sbjct: 301 DFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLR 360

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           R+  G  +  +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC 
Sbjct: 361 RIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRCP 419

Query: 424 FQ 425
           F 
Sbjct: 420 FH 421


>gi|190893218|ref|YP_001979760.1| NADH-ubiquinone oxidoreductase, chain F [Rhizobium etli CIAT 652]
 gi|190698497|gb|ACE92582.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli
           CIAT 652]
          Length = 421

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/412 (48%), Positives = 261/412 (63%), Gaps = 8/412 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           G  LS   + G +  + K+L E   D +I+ VK S LRGRGGAGF TGMKW F+PK  + 
Sbjct: 15  GHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTGMKWGFVPKR-TG 73

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++Y+RGE++     
Sbjct: 74  KPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRR 133

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVH-H-GAGAYICGEETALLESLEGKKGQPRLKP 193
           L+ A+ E +A G LG    LG D +  VH H GAGAYICGEETA+LESLEGK+ QPRLKP
Sbjct: 134 LEQAIAEAHARGYLGKRI-LGSDFNFAVHIHCGAGAYICGEETAMLESLEGKRAQPRLKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY  PT +NNVE++A VP I+ RGA W+ G G + + G KL+ +SG V  P  
Sbjct: 193 PFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPDKSPGPKLYCLSGQVRKPGL 252

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  M I   EL+E H GG+  G   + AVIPGG S P +P   +    MD+D L   GS
Sbjct: 253 YELPMGIALRELVENHAGGVLPG-RRIKAVIPGGVSAPVIPEHGLEVG-MDFDSLAAAGS 310

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W+++V+ R+  G     
Sbjct: 311 MLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKVLRRIEAGDGAPG 370

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +++ L  + K I G T CALGD AA  ++  + +FR      I+  HRC F 
Sbjct: 371 DLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHIED-HRCPFH 421


>gi|110637782|ref|YP_677989.1| NADH dehydrogenase I subunit F [Cytophaga hutchinsonii ATCC 33406]
 gi|110280463|gb|ABG58649.1| NADH dehydrogenase subunit F [Cytophaga hutchinsonii ATCC 33406]
          Length = 448

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/408 (50%), Positives = 268/408 (65%), Gaps = 16/408 (3%)

Query: 25  SRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           S+G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+ +  S+ P YLV N
Sbjct: 23  SKGGYRAVEKALKTMSPDDVMEEVKKSGLRGRGGAGFPTGMKWSFLDRK-SNNPRYLVCN 81

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGT KDR +M   PH LIEG +++S+++G++  +IY+RGE+      L+ A+ E 
Sbjct: 82  ADESEPGTFKDRYLMEKNPHILIEGLIVSSYSLGSNSTYIYIRGEYKWIVGILEKAIAEA 141

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
             +G LG N    G+D++I V++G GAYICGEETAL+ESLEGK+G PR+KPPFPA  GLY
Sbjct: 142 KNAGFLGKNILGSGFDLEIYVNNGGGAYICGEETALIESLEGKRGNPRIKPPFPAISGLY 201

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
            CPT VNNVE++A V  I+  G   Y+  G   + GTKL S  GH+N P   E  + +  
Sbjct: 202 NCPTVVNNVETLATVTPIINMGGDEYAKLGIGKSTGTKLISACGHLNRPGVYEIDLGLPV 261

Query: 263 DELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-MRGA-----IMDYDGLKE---- 310
           DE +  +++CGGIR G + L AVI GGSSVP LPA   MR A     +M Y+ L +    
Sbjct: 262 DEFLNSDEYCGGIRKGHE-LKAVIAGGSSVPILPAELFMRNAAGEARLMSYESLSDGGFA 320

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            G+ LG+   I MD +T I+   W L+ FY HESCGQC+PCREGTGWM +V+ RL  G  
Sbjct: 321 TGTMLGSGGFIAMDETTCIVHNTWTLARFYHHESCGQCSPCREGTGWMEKVLHRLEFGHG 380

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
              +IDLL E++  IEG TIC LGDAAAWP+   I++FR   E  +  
Sbjct: 381 HMHDIDLLVEIASKIEGNTICPLGDAAAWPVAAAIRHFRDEFEYHVTH 428


>gi|327191026|gb|EGE58080.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli
           CNPAF512]
          Length = 421

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/412 (48%), Positives = 260/412 (63%), Gaps = 8/412 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           G  LS   + G +  + K+L E   D +I+ VK S LRGRGGAGF TGMKW F+PK  + 
Sbjct: 15  GHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTGMKWGFVPKR-TG 73

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++Y+RGE++     
Sbjct: 74  KPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRR 133

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLESLEGKKGQPRLKP 193
           L+ A+ E +A G LG    LG D +  VH   GAGAYICGEETA+LESLEGK+ QPRLKP
Sbjct: 134 LEQAIAEAHARGYLGKRI-LGSDFNFAVHIHCGAGAYICGEETAMLESLEGKRAQPRLKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY  PT +NNVE++A VP I+ RGA W+ G G + + G KL+ +SG V  P  
Sbjct: 193 PFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPDKSPGPKLYCLSGQVRKPGL 252

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  M I   +L+E H GG+  G   + AVIPGG S P +P   +    MD+D L   GS
Sbjct: 253 YELPMGIALRDLVENHAGGVLPG-RRIKAVIPGGVSAPVIPEHGLE-VRMDFDSLAAAGS 310

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W+++V+ R+  G     
Sbjct: 311 MLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKVLRRIEAGDGAPG 370

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +++ L  + K I G T CALGD AA  ++  + +FR      I Q HRC F 
Sbjct: 371 DLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHI-QDHRCPFH 421


>gi|317123850|ref|YP_004097962.1| NADH dehydrogenase subunit F [Intrasporangium calvum DSM 43043]
 gi|315587938|gb|ADU47235.1| NADH dehydrogenase subunit F [Intrasporangium calvum DSM 43043]
          Length = 443

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/381 (51%), Positives = 245/381 (64%), Gaps = 5/381 (1%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K L+     ++  VK S +RGRGGAGF TG+KWSFM       P YLVVNADESEPGTCK
Sbjct: 35  KALDMAPADVLGAVKDSSIRGRGGAGFPTGLKWSFM-SPPDGGPRYLVVNADESEPGTCK 93

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152
           D  +M   PH LIEG +I+S+AIG   AFIY+RGE +     L  AV+E  A+G LG + 
Sbjct: 94  DIPLMMANPHALIEGAIISSYAIGCEHAFIYLRGEVVHVYRRLLRAVEEARAAGYLGDDV 153

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
              G  V+I VH GAGAYICGEETALL+SLEG++GQPRLKPPFP   GLY  PT+VNNVE
Sbjct: 154 GGKGVKVNITVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPGAAGLYARPTSVNNVE 213

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           SIA VP I+ RG  W+ G G E + G  +FS+SGHV +P   E  + IT  ELIE   GG
Sbjct: 214 SIASVPGIILRGPDWFKGMGTEKSTGFGIFSLSGHVTHPGQFEAPLGITMRELIEL-AGG 272

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           +R G   L    PGGSS P      +    +D+D +   GS LGT A+ V D +  +++A
Sbjct: 273 MRQG-HRLKFWTPGGSSTPIFTEEHLD-VPLDFDSVAAAGSMLGTRALQVFDETVSVVRA 330

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
           + R + FY HESCG+CTPCREGT W+ ++M R+  G   + +ID L ++  NI GR+ CA
Sbjct: 331 VSRWTDFYAHESCGKCTPCREGTWWLRQIMNRIENGKGTQDDIDKLVDICDNILGRSFCA 390

Query: 393 LGDAAAWPIQGLIKNFRPLIE 413
           LGDAA  PI   +K FR   E
Sbjct: 391 LGDAATSPITSAVKYFREEFE 411


>gi|134103325|ref|YP_001108986.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004456|ref|ZP_06562429.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915948|emb|CAM06061.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL
           2338]
          Length = 431

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/382 (53%), Positives = 259/382 (67%), Gaps = 5/382 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  + K L+   D +I  VK +GLRGRGGAGF  G+KWSFMPK    +PHYLV+NADE E
Sbjct: 34  YSALRKALKAHPDQLIELVKGAGLRGRGGAGFPAGVKWSFMPKE-PVKPHYLVINADEGE 92

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  +M  +PH+LIEGCVIAS+A+ A+   IYVRGE +     L +AV E YA+G 
Sbjct: 93  PGTCKDIPLMMADPHSLIEGCVIASYAMRANNCMIYVRGEALHCIRRLSSAVREAYAAGY 152

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G+D+DI+VH GAGAYICGEETALL+SLEGK+GQPRLKPPFPA  GLY CPTT
Sbjct: 153 LGKNILGSGFDLDIVVHAGAGAYICGEETALLDSLEGKRGQPRLKPPFPAAAGLYACPTT 212

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+IA VP I+  G+ W+   G E + G K++S+SGHV  P   E  +  T  EL+E
Sbjct: 213 VNNVETIASVPYIVNGGSDWFRLMGSEKSPGPKIYSVSGHVERPGQYEAPLGTTLRELLE 272

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG++ G   L    PGGSS P   A  +    +D++G  E GS LGT AV+V + + 
Sbjct: 273 L-AGGMKDGIP-LKFWTPGGSSTPLFTAEHLD-VPLDFEGAAEAGSMLGTTAVMVFNETV 329

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +  A+ + + FY+HESCG+CTPCREGT W+ +V+ER+V+G     ++D L +V  NI G
Sbjct: 330 SVPWAVMKWTQFYEHESCGKCTPCREGTFWLAQVLERMVEGRGTPEDVDTLLDVCDNIFG 389

Query: 388 RTICALGDAAAWPIQGLIKNFR 409
           R+ CALGD A  PI   IK FR
Sbjct: 390 RSFCALGDGAVSPITSGIKYFR 411


>gi|320160244|ref|YP_004173468.1| NADH-quinone oxidoreductase subunit F [Anaerolinea thermophila
           UNI-1]
 gi|319994097|dbj|BAJ62868.1| NADH-quinone oxidoreductase chain F [Anaerolinea thermophila UNI-1]
          Length = 426

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 187/379 (49%), Positives = 252/379 (66%), Gaps = 6/379 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++NEVK SGLRGRGGAGF TG+KWSF+P   +  PHY+V NADESEPGT KDR+I+   P
Sbjct: 42  VVNEVKTSGLRGRGGAGFPTGVKWSFLPN--NIWPHYVVCNADESEPGTFKDREILESNP 99

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
             L+EG +IAS+A+ A+ A+IY+RGEF +    L   + E   +GLLG +     Y + I
Sbjct: 100 FQLLEGLMIASYAVQANRAYIYLRGEFWQIARKLDEKIAELEKAGLLGDHLFGTNYSLRI 159

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
             H GAGAYICGEETALLESLEGK GQPRL+PPFPA  GLYG PT +NNVE++  +P IL
Sbjct: 160 YTHLGAGAYICGEETALLESLEGKIGQPRLRPPFPAVYGLYGKPTVINNVETLTNLPPIL 219

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +GA WY  FG E + G K+FS+SG+VN P   E  +  TF ELI  H GGI  G   + 
Sbjct: 220 EKGAQWYRSFGTEKSPGVKIFSLSGNVNRPGNYELPLGTTFRELIYTHGGGIPEG-RKVK 278

Query: 282 AVIPGGSSVPCLPAGQ--MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           A++P G+S   +      +    MDY+ +  +GS LG+A+VIV D + ++   + +   F
Sbjct: 279 AILPAGASSAIIAVNDDAILDTPMDYESVAAIGSQLGSASVIVADETVNMAWLVSKTVNF 338

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           +KHESCG+CTPCREGT WM R+ +R++ G A + ++DLL  V+  I G+ +CALG+ +  
Sbjct: 339 FKHESCGKCTPCREGTFWMNRITQRMMAGRAVESDVDLLANVANQIAGKCLCALGEFSVM 398

Query: 400 PIQGLIKNFRPLIEERIDQ 418
            +Q  I+ FR    E++ Q
Sbjct: 399 AVQTGIRQFRTDFLEQVKQ 417


>gi|293191721|ref|ZP_06609278.1| NADH oxidoreductase, F subunit [Actinomyces odontolyticus F0309]
 gi|292820493|gb|EFF79475.1| NADH oxidoreductase, F subunit [Actinomyces odontolyticus F0309]
          Length = 434

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 206/418 (49%), Positives = 255/418 (61%), Gaps = 12/418 (2%)

Query: 8   IFTNLYGLQGKSLSDSM-SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I TN +G +     DS  SRG +  ++K        I+  VK SGLRGRGGAGF +G+KW
Sbjct: 14  ILTNGWGEERSWTLDSYRSRGGYQGLEKARTMEPADIVQAVKDSGLRGRGGAGFPSGLKW 73

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YLVVNADESEPGTCKD  ++   PH LIEG  I S AIG   AF+Y+R
Sbjct: 74  SFLPP-ADGGPRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE       L  AV E   +G+LG       D+ I  H GAGAYICGEETALL+SLEG++
Sbjct: 133 GEVTHVYRRLLEAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GLY  PT VNNVE+IA V  I R    W++  G E ++G  +FS+SG
Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPKWFASMGTEKSKGHGIFSVSG 245

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HVN P   E    IT  ELIE   GGIR G   L    PGGSS P     ++   ++DY+
Sbjct: 246 HVNNPGQFEAPFGITMRELIEM-AGGIRDG-HKLKFWTPGGSSTPIFTEDELD-TLLDYE 302

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS LGT A+ V D +  +++ I R S FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +G  +  ++DLL E++ NI GR+ C LGDAAA PI   IK FR   E  +    R  F
Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420


>gi|195027493|ref|XP_001986617.1| GH21461 [Drosophila grimshawi]
 gi|193902617|gb|EDW01484.1| GH21461 [Drosophila grimshawi]
          Length = 546

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/419 (47%), Positives = 263/419 (62%), Gaps = 3/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NLYG     L  +  RG W     +L+ G +WI++EVK SGLRGRGG+G+ 
Sbjct: 126 LKDCDRIFQNLYGFHDWRLKGACQRGDWYRTADLLDMGANWIVDEVKRSGLRGRGGSGYY 185

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG KW F+ KV ++    L++N  E EPGTCKDR+I+RHEPH +IEGC++A +A+G    
Sbjct: 186 TGNKWEFLQKVNANN-KILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGYAMGCEKC 244

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IYVR  F  E  +LQ A+ E Y  GLLG N+   G   DI V  G   Y+ GEETAL+ 
Sbjct: 245 IIYVRNCFYNEACNLQFALAEAYRYGLLGCNACDTGIKFDIQVQRG-DRYLSGEETALVN 303

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK  +PR +PP+    G +  P  V N E++AVVPTILRRGA W++G GR  N GTK
Sbjct: 304 CLMGKLARPRKRPPYLHEQGYFDHPCLVLNTETLAVVPTILRRGAKWFTGLGRNMNFGTK 363

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSI GHV +PCTVEE MS+   E+I+ H GG+ GGW+NLL V PGG S P +      G
Sbjct: 364 LFSICGHVQHPCTVEEEMSMPLREIIDMHAGGVCGGWNNLLGVFPGGLSSPLIGKVGAEG 423

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD L++ GS  GT  +IV+  + D +  + R   FY  ++C QCTPCR+G  W+ +
Sbjct: 424 LLMDYDCLQKAGSSFGTGGIIVVSNNCDPLLVMQRSIEFYMKQTCKQCTPCRDGAIWLPK 483

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++    KG +  + ID +  + K + G TIC L D+ A    GLI +F P I++RI+ +
Sbjct: 484 ILRNFTKGESVPQMIDFVAVICKTMIGTTICGLSDSQANVAMGLITHFAPHIQQRIEAF 542


>gi|55980058|ref|YP_143355.1| NADH-quinone oxidoreductase subunit 1 [Thermus thermophilus HB8]
 gi|2499313|sp|Q56222|NQO1_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 1; AltName:
           Full=NADH dehydrogenase I chain 1; AltName: Full=NDH-1
           subunit 1
 gi|90109654|pdb|2FUG|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109662|pdb|2FUG|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109670|pdb|2FUG|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109678|pdb|2FUG|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|258588588|pdb|3I9V|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588596|pdb|3I9V|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588604|pdb|3IAM|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588612|pdb|3IAM|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588620|pdb|3IAS|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588628|pdb|3IAS|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588636|pdb|3IAS|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588644|pdb|3IAS|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|296863604|pdb|3M9S|1 Chain 1, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|296863617|pdb|3M9S|A Chain A, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|1279866|gb|AAA97943.1| NADH dehydrogenase I, subunit NQO1 [Thermus thermophilus]
 gi|55771471|dbj|BAD69912.1| NADH-quinone oxidoreductase chain 1 [Thermus thermophilus HB8]
          Length = 438

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/421 (46%), Positives = 265/421 (62%), Gaps = 19/421 (4%)

Query: 7   RIFTNLYGLQGK----SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
           R    LY   GK    +L   +  G ++   ++L EK  D +I EVK SGLRGRGGAGF 
Sbjct: 12  RFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFP 71

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMPK    + HYL+ NADESEPG+ KDR I+   PH LIEG ++A +AI A   
Sbjct: 72  TGLKWSFMPK-DDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVG 130

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVRGE+ R  + L+ A+ E  A G LG N     +  D+ VH GAGAYICGEETAL+ 
Sbjct: 131 YIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMN 190

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +  PRLKPPFPA  GL+G PTT+NNVE++A V  I+ RGA W++  G E ++G K
Sbjct: 191 SLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMK 250

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299
           L+ ISG V  P   E  M  TF ELI +  G   G  + + A+IPGGSS P LP   ++ 
Sbjct: 251 LYQISGPVKRPGVYELPMGTTFRELIYEWAG---GPLEPIQAIIPGGSSTPPLPFTEEVL 307

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWM 358
              M Y+ L+  GS LGT  VI++     ++ A+W L+ FY HESCG+CTPCREG  G+M
Sbjct: 308 DTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFM 367

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +  ++  G  ++++++ L  +   IEGR+ C L DAA WP++G +++F+       DQ
Sbjct: 368 VNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFK-------DQ 420

Query: 419 Y 419
           Y
Sbjct: 421 Y 421


>gi|46200217|ref|YP_005884.1| NADH-quinone oxidoreductase chain F [Thermus thermophilus HB27]
 gi|46197845|gb|AAS82257.1| NADH-quinone oxidoreductase chain F [Thermus thermophilus HB27]
          Length = 438

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/421 (46%), Positives = 265/421 (62%), Gaps = 19/421 (4%)

Query: 7   RIFTNLYGLQGK----SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
           R    LY   GK    +L   +  G ++   ++L EK  D +I EVK SGLRGRGGAGF 
Sbjct: 12  RFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFP 71

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMPK    + HYL+ NADESEPG+ KDR I+   PH LIEG ++A +AI A   
Sbjct: 72  TGLKWSFMPK-DDGKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVG 130

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVRGE+ R  + L+ A+ E  A G LG N     +  D+ VH GAGAYICGEETAL+ 
Sbjct: 131 YIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMN 190

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +  PRLKPPFPA  GL+G PTT+NNVE++A V  I+ RGA W++  G E ++G K
Sbjct: 191 SLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMK 250

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299
           L+ ISG V  P   E  M  TF ELI +  G   G  + + A+IPGGSS P LP   ++ 
Sbjct: 251 LYQISGPVKRPGVYELPMGTTFRELIYEWAG---GPLEPIQAIIPGGSSTPPLPFTEEVL 307

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWM 358
              M Y+ L+  GS LGT  VI++     ++ A+W L+ FY HESCG+CTPCREG  G+M
Sbjct: 308 DTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFM 367

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +  ++  G  ++++++ L  +   IEGR+ C L DAA WP++G +++F+       DQ
Sbjct: 368 VNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFK-------DQ 420

Query: 419 Y 419
           Y
Sbjct: 421 Y 421


>gi|115375223|ref|ZP_01462489.1| NADH-quinone oxidoreductase chain f 2 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367785|gb|EAU66754.1| NADH-quinone oxidoreductase chain f 2 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 405

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/393 (49%), Positives = 262/393 (66%), Gaps = 16/393 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+EVK S LRGRGGAGF TG+KWSF+PK  + +P YL VNADESEPGT KDR I+  +P
Sbjct: 6   IIDEVKKSNLRGRGGAGFPTGLKWSFVPKD-NPKPKYLTVNADESEPGTFKDRYILSLDP 64

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVD 160
           H ++EG  IA++A+G H  +IY+RGEF    +  QAA+ E YA+G+ G  + LG  Y+++
Sbjct: 65  HMMLEGIAIAAYALGVHTCYIYMRGEFKHPAQRTQAAIQEAYAAGIFG-KTLLGRDYELN 123

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
             +  GAGAYICGEETALLESLEGKKG PRLKPPFPA VGL+G PT +NNVE+++ VP I
Sbjct: 124 CYLVRGAGAYICGEETALLESLEGKKGWPRLKPPFPAVVGLFGSPTVINNVETLSNVPHI 183

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCGGIRGGWD 278
             RGA WYS  G + + GT+L  +SG VN P   E  +  T  ELI  +K+  G+  G  
Sbjct: 184 FARGADWYSKLGTDKSGGTRLVCLSGTVNRPGVYEIPLQTTVSELIFGDKYGQGLPAG-R 242

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           ++ AVIPGGSS P L   ++  A ++++ L+   +  G+  VIVMD ++ +++ +WR++ 
Sbjct: 243 SVKAVIPGGSSAPVLSPNELDVA-LEFEALRLKQTMAGSGGVIVMDDTSCMVRCLWRVAR 301

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-------GRTIC 391
           FY  ESCGQCTPCREGT W  R++ ++ +G  +  +I++L  V+ +I        G TIC
Sbjct: 302 FYAEESCGQCTPCREGTPWQTRLLRKIEEGRGEMADIEMLSHVASSIAPYPPMGLGNTIC 361

Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           ALGDAAA P    +  FR   E  I +  RC F
Sbjct: 362 ALGDAAALPTHSFLMRFRAEFEAHIHE-KRCPF 393


>gi|313679590|ref|YP_004057329.1| NADH dehydrogenase subunit f [Oceanithermus profundus DSM 14977]
 gi|313152305|gb|ADR36156.1| NADH dehydrogenase subunit F [Oceanithermus profundus DSM 14977]
          Length = 439

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 191/411 (46%), Positives = 256/411 (62%), Gaps = 13/411 (3%)

Query: 7   RIFTNLYGLQGK----SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61
           R    LY   GK    +L   +  G ++    +L  K  + ++ EVK SGLRGRGGAGF 
Sbjct: 13  RFTPTLYAHVGKPNSWTLDYYLGHGGYETARAVLTGKQPEEVVEEVKKSGLRGRGGAGFP 72

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP     + HYL+ NADESEP + KDR +M  +PH LIEG +I  +AI A   
Sbjct: 73  TGVKWSFMPN--DGQQHYLIANADESEPASFKDRYLMEDDPHQLIEGMIIGGYAIRATKG 130

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           ++Y+RGE+ +  + L AA+ E Y  G LG N    G+D D+ VH GAGAYICGEETAL+ 
Sbjct: 131 YVYIRGEYRKAYDRLTAAIREAYERGYLGKNLFGSGFDFDLYVHRGAGAYICGEETALMN 190

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +  PR+KPPFPA  GLYG PTT+NN+ES+A V  IL+RGA W++  G E ++G K
Sbjct: 191 SLEGLRANPRMKPPFPAQSGLYGKPTTINNIESLASVVHILQRGADWFAQMGTERSKGMK 250

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299
           LF +SG    P   E  +   F ELI    GG     + + A IPGGSS P LP   +  
Sbjct: 251 LFQVSGPARRPGVYELPLGTPFRELIYDWAGGPT---EPIKAFIPGGSSTPLLPFTDEYL 307

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWM 358
              MDY+ L    S LGT  V+++  S  I+ A+W L  FY HESCG+CTPCREG +GW+
Sbjct: 308 DLPMDYESLVAAKSALGTGGVVLIPESVCIVDAMWNLIRFYGHESCGKCTPCREGVSGWL 367

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            ++ E+  +G A + ++  + ++   IEGR+ C L DAA WPI+G +++FR
Sbjct: 368 PQLFEKFERGQATQEDLKTMEDLLDQIEGRSFCPLADAAVWPIRGALRHFR 418


>gi|145225065|ref|YP_001135743.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium gilvum
           PYR-GCK]
 gi|145217551|gb|ABP46955.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium gilvum
           PYR-GCK]
          Length = 438

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/405 (50%), Positives = 271/405 (66%), Gaps = 7/405 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72
           Q  ++   +  G +  +++ L    D +I  VK SGLRGRGGAGF TG KWSF+P+    
Sbjct: 16  QPWTMDTYIRHGGYQALERALAMSPDDVIGTVKDSGLRGRGGAGFPTGTKWSFIPQGGEG 75

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            + +PHYLV+NADESEPGTCKD  +M   PH L+EG +IA++AI A+ AFIY+RGE +  
Sbjct: 76  AAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRANHAFIYLRGEVVPV 135

Query: 133 RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQAAV E YA+G LG +    G+D+++ VH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 136 LRRLQAAVAEAYAAGHLGHDIHGSGFDLELTVHAGAGAYICGEETALLDSLEGRRGQPRL 195

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLY CPT VNNVESIA VP IL  G  W+   G E + G  L+S+SGHV  P
Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL++ + GG+R G + L    PGGSS P L A  +    +DY+G+  +
Sbjct: 256 GQYEAPLGITLRELLD-YAGGVRAGHE-LKFWTPGGSSTPLLTADHLD-VPLDYEGMAGV 312

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 313 GSMLGTKALQIFDDTTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGRGT 372

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + ++D L ++S NI G++ CALGD AA PI   +K+FR   E  +
Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRDEYEAHL 417


>gi|195149010|ref|XP_002015452.1| GL11014 [Drosophila persimilis]
 gi|194109299|gb|EDW31342.1| GL11014 [Drosophila persimilis]
          Length = 445

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/420 (46%), Positives = 253/420 (60%), Gaps = 22/420 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W +   +LEKG DWI+ +               
Sbjct: 43  LHDCDRVFQNLYGRHDWRLKGACKRGDWYHTAVLLEKGSDWIMEQ--------------- 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
               W+F+    S +   LV+N  E EPGTCKDR+I+RHEPH +IEGC++A FA+G + A
Sbjct: 88  ----WNFLRSAESKQDKVLVMNCAEGEPGTCKDREIIRHEPHKIIEGCLLAGFAMGCNRA 143

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            IYVR  F  E  +LQ A+ E Y  GLLG S    G   DI+V  G   Y+CGEETAL++
Sbjct: 144 IIYVRNRFYNEACNLQFALAEAYRYGLLGPSACDTGIKFDILVQRG-DRYLCGEETALVK 202

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK G+PR +PPF    G +  P  V N ESIAV+PTILRRGASW++  GR  N GTK
Sbjct: 203 CLMGKIGRPRRRPPFLTEQGYFSHPCVVINAESIAVLPTILRRGASWWADLGRSYNSGTK 262

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG VN PCTVEE MS+   +LIEKH GG+RGGWDNLLA+ PGG S P +       
Sbjct: 263 LFNISGQVNSPCTVEEEMSMPMRDLIEKHAGGVRGGWDNLLAIFPGGLSTPLINKQVAGE 322

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD++ L+  GS LG+ A+IV+++ +D ++ + R   FY+  +C QCT CR+G  W+  
Sbjct: 323 VLMDFECLEAAGSSLGSGALIVVNKQSDPLQVMLRSIQFYEKHTCKQCTYCRDGAIWLPE 382

Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + +R VKG A   EID    + K I +   IC L          L+ NFRP IE+RI Q+
Sbjct: 383 LFDRFVKGEAHPHEIDWTLAIGKKIKDSNPICGLAQGQVNVAVSLVDNFRPYIEDRILQF 442


>gi|320449685|ref|YP_004201781.1| NADH-quinone oxidoreductase subunit F [Thermus scotoductus SA-01]
 gi|320149854|gb|ADW21232.1| NADH-quinone oxidoreductase, subunit F [Thermus scotoductus SA-01]
          Length = 437

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/421 (46%), Positives = 265/421 (62%), Gaps = 20/421 (4%)

Query: 7   RIFTNLYGLQGK----SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
           R    LY   G+    +L   +  G ++   ++L EK  + +I EVK SGLRGRGGAGF 
Sbjct: 12  RFEKTLYAHVGQEGSWTLDYYLKHGGYETAKRVLKEKTPEEVIEEVKRSGLRGRGGAGFP 71

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMPK    + HYL+ NADESEPG+ KDR IM   PH L+EG ++A +AI A   
Sbjct: 72  TGVKWSFMPK--DGKQHYLICNADESEPGSFKDRYIMEDVPHLLLEGMILAGYAIRATVG 129

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVRGE+ +  + L+AA+ E    G LG N    G+  D+ VH GAGAYICGEETAL+ 
Sbjct: 130 YIYVRGEYRKAADRLEAAIREARTRGYLGENLFGSGFSFDVHVHRGAGAYICGEETALMN 189

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +  PRLKPPFPA  GL+G PTT+NNVE++A V  IL RGA W++  G E ++G K
Sbjct: 190 SLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPILERGADWFASMGTEQSKGMK 249

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299
           L+ ISG V  P   E  M  TF ELI    GG     + + A+IPGGSS P LP   ++ 
Sbjct: 250 LYQISGPVRRPGVYELPMGTTFRELIYDWAGGP---LEPIQALIPGGSSTPPLPFTDEVL 306

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWM 358
              M Y+ L+  GS LGT  VI++     ++ A+W ++ FY HESCG+CTPCREG  G+M
Sbjct: 307 DTPMSYEHLQAQGSMLGTGGVILIPERVSMVDAMWNVTRFYAHESCGKCTPCREGVAGFM 366

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +  ++  G  ++++++ L  +   IEGR+ C L DAA WP++G +K+F+       DQ
Sbjct: 367 VNLFAKIGSGEGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLKHFK-------DQ 419

Query: 419 Y 419
           Y
Sbjct: 420 Y 420


>gi|302864906|ref|YP_003833543.1| NADH-quinone oxidoreductase subunit F [Micromonospora aurantiaca
           ATCC 27029]
 gi|302567765|gb|ADL43967.1| NADH-quinone oxidoreductase, F subunit [Micromonospora aurantiaca
           ATCC 27029]
          Length = 438

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/395 (49%), Positives = 253/395 (64%), Gaps = 11/395 (2%)

Query: 22  DSMSRGHWDNVD------KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           D+   G ++ +D      K L+   D +I  +K SGLRGRGGAGF TG+KW F+P+    
Sbjct: 24  DAWRLGTYEKLDGYAALRKALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADE EPGTCKD  +M H+PH+L+EG +IAS+AI A+ A+IY+RGE +     
Sbjct: 83  KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L++AVDE YA G LG N    G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PP
Sbjct: 143 LRSAVDEAYAKGYLGRNVLGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNV +IA VP I+  GA W+   G E + G  ++S+SG +  P   
Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRIAEPGQY 262

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E SM IT  ELIE   GG++ G  NL    PGGSS P L A  +    +D++G+   GS 
Sbjct: 263 ECSMGITLRELIEL-AGGMKPG-HNLKFWTPGGSSTPLLTAEHLD-VPLDFEGVAAAGSI 319

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A  +       + A +R   FY HESCG+CTPCREG  WM+RV  R++ G     +
Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHED 379

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +D L +   NI GR+ C LGD A   +   +K F+
Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFK 414


>gi|154508642|ref|ZP_02044284.1| hypothetical protein ACTODO_01143 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798276|gb|EDN80696.1| hypothetical protein ACTODO_01143 [Actinomyces odontolyticus ATCC
           17982]
          Length = 434

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 206/418 (49%), Positives = 254/418 (60%), Gaps = 12/418 (2%)

Query: 8   IFTNLYGLQGKSLSDSM-SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I TN +G +     DS  SRG +  ++K        I+  VK SGLRGRGGAGF +G+KW
Sbjct: 14  ILTNGWGEERSWTLDSYRSRGGYQGLEKARTMEPADIVQAVKDSGLRGRGGAGFPSGLKW 73

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YLVVNADESEPGTCKD  ++   PH LIEG  I S AIG   AF+Y+R
Sbjct: 74  SFLPP-ADGGPRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE       L  AV E   +G+LG       D+ I  H GAGAYICGEETALL+SLEG++
Sbjct: 133 GEVTHVYRRLLEAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GLY  PT VNNVE+IA V  I R    W++  G E ++G  +FS+SG
Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPEWFASMGTEKSKGHGIFSVSG 245

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HVN P   E    IT  ELIE   GGIR G   L    PGGSS P     ++    +DY+
Sbjct: 246 HVNNPGQFEAPFGITMRELIEM-AGGIRDG-HKLKFWTPGGSSTPIFTEDELD-TPLDYE 302

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS LGT A+ V D +  +++ I R S FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +G  +  ++DLL E++ NI GR+ C LGDAAA PI   IK FR   E  +    R  F
Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420


>gi|258651221|ref|YP_003200377.1| NADH-quinone oxidoreductase, F subunit [Nakamurella multipartita
           DSM 44233]
 gi|258554446|gb|ACV77388.1| NADH-quinone oxidoreductase, F subunit [Nakamurella multipartita
           DSM 44233]
          Length = 439

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 193/377 (51%), Positives = 250/377 (66%), Gaps = 5/377 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  VK SGLRGRGGAGF TG+KWSF+PK  S +PHYLV+NADE EPGTCKD  +M  
Sbjct: 50  DRLIELVKNSGLRGRGGAGFPTGLKWSFLPKGGS-KPHYLVINADEGEPGTCKDIPLMMA 108

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH+LIEGC+I S+AI A    IY+RGE +     + AAV E  A+G LG +    GYD+
Sbjct: 109 DPHSLIEGCIITSYAIRAPFCAIYIRGEAVHAIRRVAAAVREAKAAGFLGRDILGSGYDL 168

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I+VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA  GLY  PT VNNVE+IA VP 
Sbjct: 169 EIVVHGGAGAYICGEETALLDSLEGRRGQPRLKPPFPAVEGLYASPTVVNNVETIASVPI 228

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  G+ WY   G E + G K++S+SGHV  P   E  M  T  +L+    GG+R G   
Sbjct: 229 IVMGGSDWYRSLGTEKSPGPKIYSLSGHVTRPGQYEAPMGTTLRQLLAS-AGGMRDGIP- 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L    PGGSS P      +    + +D +   GS LGT A++  + +  +  A+W+   F
Sbjct: 287 LKFFTPGGSSTPIFTPEHLD-VPLSFDDVAAAGSMLGTTALMCFNETVSVPWAVWKWLEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           YKHESCG+CTPCREGTGW+++++ R+V G     ++D + + + NI GR+ CALGDAAA 
Sbjct: 346 YKHESCGKCTPCREGTGWLVQILRRVVTGHGTLEDLDTMVDAAGNIAGRSFCALGDAAAT 405

Query: 400 PIQGLIKNFRPLIEERI 416
           PI    K FR   E+ +
Sbjct: 406 PILSSFKYFRSEFEDLV 422


>gi|315501191|ref|YP_004080078.1| NADH-quinone oxidoreductase, f subunit [Micromonospora sp. L5]
 gi|315407810|gb|ADU05927.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. L5]
          Length = 438

 Score =  365 bits (938), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 194/395 (49%), Positives = 253/395 (64%), Gaps = 11/395 (2%)

Query: 22  DSMSRGHWDNVD------KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           D+   G ++ +D      K L+   D +I  +K SGLRGRGGAGF TG+KW F+P+    
Sbjct: 24  DAWRLGTYEKLDGYAALRKALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADE EPGTCKD  +M H+PH+L+EG +IAS+AI A+ A+IY+RGE +     
Sbjct: 83  KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L++AVDE YA G LG N    G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PP
Sbjct: 143 LRSAVDEAYAKGYLGRNVLGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNV +IA VP I+  GA W+   G E + G  ++S+SG +  P   
Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRIADPGQY 262

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E SM IT  ELIE   GG++ G  NL    PGGSS P L A  +    +D++G+   GS 
Sbjct: 263 ECSMGITLRELIEL-AGGMKPG-HNLKFWTPGGSSTPLLTAEHLD-VPLDFEGVAAAGSI 319

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A  +       + A +R   FY HESCG+CTPCREG  WM+RV  R++ G     +
Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHED 379

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +D L +   NI GR+ C LGD A   +   +K F+
Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFK 414


>gi|324521898|gb|ADY47951.1| NADH dehydrogenase [ubiquinone] flavoprotein 1 [Ascaris suum]
          Length = 323

 Score =  365 bits (938), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 173/269 (64%), Positives = 205/269 (76%), Gaps = 1/269 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D DRIFTNLYG     L  +++RG W    +I+ KG+DWII E+ ASGLRGRGGAGF 
Sbjct: 46  LSDDDRIFTNLYGRHDYRLKGALARGDWYKTKEIILKGQDWIIKEISASGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKW FM +    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 106 SGMKWGFMKRPYDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGVAMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY RGEF  E   LQ A+ E Y +G LG +    GY  D+ VH GAGAYICGEETALLE
Sbjct: 166 YIYARGEFYNEACILQEAIHEAYKAGYLGKDCCGTGYSFDVFVHRGAGAYICGEETALLE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 226 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGAWFASFGRERNHGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKH 269
           LF ISGHV  PCTVEE MSI   +LIE+H
Sbjct: 286 LFCISGHVVNPCTVEEEMSIPLKDLIERH 314


>gi|162452499|ref|YP_001614866.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
 gi|161163081|emb|CAN94386.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
          Length = 450

 Score =  365 bits (937), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 196/446 (43%), Positives = 263/446 (58%), Gaps = 25/446 (5%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML     +  N     G  L+     G +    + L   R+ ++ E+KA+ +RGRGGAGF
Sbjct: 1   MLRLTRYLTKNYDTPDGHKLAVYEKGGGYQQAKRALGMTREALVEEMKAANIRGRGGAGF 60

Query: 61  STGMKWSFMP-KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           + G+KWSFMP     +RPHYLV+NADE EPGT KDR +M   PH ++EGC+I  F IGAH
Sbjct: 61  AMGVKWSFMPWPPKPERPHYLVINADEGEPGTFKDRTLMEKNPHAVVEGCIIGCFGIGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IYVR E    +  L  A++E  A G LG     + Y V++ VH GAGAYICGEET+L
Sbjct: 121 AAYIYVRDELHLSKARLWGAIEEARAKGYLGKRPFGIDYPVEVYVHTGAGAYICGEETSL 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR- 237
           L SLEGK+G+PRLKPPFPA  G +G PTTVNN+E+IA VPT L  G   +S     ++  
Sbjct: 181 LNSLEGKRGEPRLKPPFPAQFGAFGMPTTVNNLETIAAVPTALELGGENFSKLSSLHHLK 240

Query: 238 --GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
             G +LF +SGHVN P   E ++ +T  +LI ++ GG++ G   LL VIPGGSS P L A
Sbjct: 241 DGGCRLFGVSGHVNNPGIFEAAVGVTLRDLIYEYGGGVKHG--KLLGVIPGGSSCPILRA 298

Query: 296 GQMRGAIMD------------------YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
            ++  A  D                   D  + +G+ LGT   IV+      + A+  L 
Sbjct: 299 DEVVNAPSDKSPLHPWHGQSVLDVPLGVDTFRALGTMLGTCCAIVLSDKACPVLAMHNLM 358

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            FY+HESCGQCTPCREG+ W+ R+++R+V G     E+D L+E++ NI G TICA G+  
Sbjct: 359 RFYRHESCGQCTPCREGSAWIHRILDRIVHGEGTIEELDRLHEIADNIMGNTICAFGEGT 418

Query: 398 AWPIQGLIKNFRPLIEERIDQYHRCN 423
           A P  G ++ FR   E  I    R +
Sbjct: 419 AMPALGFLRKFRKEFEAYIQTKGRSS 444


>gi|297159513|gb|ADI09225.1| NADH dehydrogenase I chain F [Streptomyces bingchenggensis BCW-1]
          Length = 460

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 197/409 (48%), Positives = 258/409 (63%), Gaps = 12/409 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  ++   +    ++ + + L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 28  QSWTMETYLRHDGYEGMRRALAMAPDDVIALVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 86

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH LIEG VIA  AI +  AFIY+RGE +     
Sbjct: 87  KPHYLVVNADESEPGTCKDIPLLFANPHALIEGMVIACHAIRSQHAFIYLRGEVVPVLRR 146

Query: 136 LQAAVDECYASGLLGS----NSKLGY----DVDIIVHHGAGAYICGEETALLESLEGKKG 187
           L  AV E Y +G LG       KLG     D++I VH GAGAYICGEETALL+SLEG++G
Sbjct: 147 LHEAVREAYEAGYLGKADARRQKLGLADLPDLEITVHAGAGAYICGEETALLDSLEGRRG 206

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           QPRL+PPFPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGH
Sbjct: 207 QPRLRPPFPAVAGLYACPTVVNNVESIASVPAILTKGNEWFRSMGSEKSPGFTLYSLSGH 266

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V  P   E  + IT  +L++   GGIR G   L    PGGSS P L    +    +DY+G
Sbjct: 267 VAAPGQYEGPLGITLRQLLDM-SGGIRPG-HRLKFWTPGGSSTPLLTEEHLD-VPLDYEG 323

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           +   GS LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  
Sbjct: 324 VGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEA 383

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           G  +  ++  L +++ NI G++ CALGD AA PI   +K F+   E+ I
Sbjct: 384 GKGRMEDLAKLADIADNINGKSFCALGDGAASPIFSSLKYFKEEYEQHI 432


>gi|94985021|ref|YP_604385.1| NADH-quinone oxidoreductase, F subunit [Deinococcus geothermalis
           DSM 11300]
 gi|94555302|gb|ABF45216.1| NADH dehydrogenase subunit F [Deinococcus geothermalis DSM 11300]
          Length = 446

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 193/410 (47%), Positives = 257/410 (62%), Gaps = 11/410 (2%)

Query: 7   RIFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           R    LY   G+    +L   +  G +  V +      D +I EVK SGLRGRGGAGF+T
Sbjct: 18  RFAPTLYAHVGQPGSWTLDFYLRHGGYQGVRRAFALRPDAVIEEVKKSGLRGRGGAGFAT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP +   + HY++ NADESEPG+ KDR ++  +PH LIEG +I  +A+ A   +
Sbjct: 78  GLKWSFMP-LNDGKQHYIICNADESEPGSFKDRYLLSEDPHQLIEGMLIGGYAMRASVGY 136

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+RGE++     + AA+ E  A+GLLG N    G+D D+ VH GAGAYICGEETAL+ S
Sbjct: 137 IYIRGEYVHAAGRVWAAIREARAAGLLGKNVLGSGFDFDLQVHRGAGAYICGEETALMNS 196

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEG +  PRLKPPFPA  GLYG PTT+NNVE+      IL+ GA W++  G E ++G KL
Sbjct: 197 LEGLRANPRLKPPFPAAAGLYGMPTTINNVETFCAATQILKYGADWHARMGTEKSKGMKL 256

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRG 300
           F ISG V  P   E  +  TF EL+    GG     +++ A+IPGGSS P LP   +   
Sbjct: 257 FQISGPVRRPGVYELPLGTTFRELVYDWAGGP---LEDIKAIIPGGSSCPMLPWDDRTLD 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMM 359
             MDY+ +   GS LGT  V ++ ++  I+   W L  FY HESCG+CTPCREG +GWM+
Sbjct: 314 TPMDYESVAAAGSMLGTGGVTLIPKADCIVNVTWNLVRFYAHESCGKCTPCREGISGWMV 373

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           R+ E+LV+G  Q  ++ L+ ++S NI GR+ CAL DA   P+   IK FR
Sbjct: 374 RMYEKLVRGHGQPGDVQLILDMSDNIGGRSFCALADACLGPVLSSIKLFR 423


>gi|219847961|ref|YP_002462394.1| NADH-quinone oxidoreductase subunit F [Chloroflexus aggregans DSM
           9485]
 gi|219542220|gb|ACL23958.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus aggregans DSM
           9485]
          Length = 434

 Score =  365 bits (937), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 193/398 (48%), Positives = 257/398 (64%), Gaps = 9/398 (2%)

Query: 26  RGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
            G W+     L EK    I+  VK SGLRGRGGAGF TGMKWSF+PK     P YL+ N 
Sbjct: 26  HGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTGMKWSFLPK--GVYPRYLLCNC 83

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT  +  I+   PH LIEG  +++FAI A+ A+IY+RGEF     +L+ A+ + Y
Sbjct: 84  DESEPGTFNNHQIIDKNPHQLIEGVALSAFAIEANTAYIYMRGEFAAAARTLERAIAQAY 143

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            +G LG N    G+D+DI VH GAGAYICGEETAL+ESLEGK GQPRLKPPFPA  GLYG
Sbjct: 144 EAGFLGKNILSTGFDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLKPPFPAVAGLYG 203

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT +NNVE++A VP I+ +G +WY   G E + GTK FS+SGHVN P   E    +   
Sbjct: 204 KPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCFSLSGHVNRPGNYELPFGVPLR 263

Query: 264 ELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
           ELIE  ++ GG++GG   +  +IPGG+S P L A  +    +DY+ L   GS LG+ AVI
Sbjct: 264 ELIESPEYGGGMKGG-RPVKIIIPGGASAPWLTADHLD-VPLDYESLAAAGSMLGSGAVI 321

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV-KGIAQKREIDLLYE 380
           V++ +       +++  F+KHESCG+CTPCREGT W++RV+ R+V +G A   +ID L+ 
Sbjct: 322 VLNDTVSAPHLAYKMDEFFKHESCGKCTPCREGTHWLVRVLHRMVEEGHATAADIDTLHG 381

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + + + G   C LG++A  PI+  ++ F    E  + Q
Sbjct: 382 IYRQMAGNCFCLLGESAVMPIKSALQLFPHEFEALVKQ 419


>gi|254382438|ref|ZP_04997797.1| NADH-quinone oxidoreductase subunit F [Streptomyces sp. Mg1]
 gi|194341342|gb|EDX22308.1| NADH-quinone oxidoreductase subunit F [Streptomyces sp. Mg1]
          Length = 448

 Score =  365 bits (936), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 194/389 (49%), Positives = 253/389 (65%), Gaps = 5/389 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    + HYLVVNADESE
Sbjct: 42  YEGLRKALAMTPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGKSHYLVVNADESE 100

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG +IA +AI +  AFIY+RGE +     L  AV E Y +G 
Sbjct: 101 PGTCKDIPLLFANPHSLIEGMIIACYAIRSEHAFIYLRGETVPVLRRLHEAVREAYEAGY 160

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG++    G  +DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 161 LGTDILGSGLKLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 220

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 221 VNNVESIASVPAILNRGKDWFKAMGTEKSPGFTLYSLSGHVVGPGQYEAPLGITLRQLLD 280

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P     +     +DY+G+   GS LGT A+   D +T
Sbjct: 281 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 337

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++D L +++ NI G
Sbjct: 338 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDLDKLNDIADNING 397

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ CALGD AA PI   +K FR   E+ I
Sbjct: 398 KSFCALGDGAASPIFSSLKYFREEYEQHI 426


>gi|297493964|gb|ADI40704.1| NADH dehydrogenase flavoprotein 1, 51kDa [Cynopterus sphinx]
 gi|297493966|gb|ADI40705.1| NADH dehydrogenase flavoprotein 1, 51kDa [Rousettus leschenaultii]
          Length = 275

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 171/260 (65%), Positives = 205/260 (78%), Gaps = 1/260 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVKASGLRGRGGAGF 
Sbjct: 15  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKASGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 75  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVLRGAGAYICGEETALIE 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 254

Query: 241 LFSISGHVNYPCTVEESMSI 260
           LF+ISGHVN+PCTVEE MS+
Sbjct: 255 LFNISGHVNHPCTVEEEMSV 274


>gi|227494508|ref|ZP_03924824.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
 gi|226832242|gb|EEH64625.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
          Length = 444

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/425 (48%), Positives = 256/425 (60%), Gaps = 19/425 (4%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           D DR +T         L    +RG +  ++K L      I + VKASGLRGRGGAGF TG
Sbjct: 21  DHDRSWT---------LDSYRARGGYRGLEKALTLEPTQITDMVKASGLRGRGGAGFPTG 71

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSF+P     +P YLVVNADESEPGTCKD  ++   PH LIEG  I + AI    AFI
Sbjct: 72  LKWSFLPP-DDGKPRYLVVNADESEPGTCKDIPLLMANPHALIEGMAITARAIRCEHAFI 130

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLG----YDVDIIVHHGAGAYICGEETALL 179
           Y+RGE       L AAV E   +GL+G    LG    +++ I  H GAGAYICGEETALL
Sbjct: 131 YLRGEVAHVYRRLLAAVREAEEAGLIGQG--LGPNGDFNLRITAHAGAGAYICGEETALL 188

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEG++G PRLKPPFPA  GLY  PT VNNVESI+ VP I      W++  G E + G 
Sbjct: 189 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVESISQVPGIFANPEGWFAAMGTEKSTGH 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             FS+SGHVN P   E    IT  ELIE   GGIR G   L    PGGSS P     ++ 
Sbjct: 249 GFFSVSGHVNNPGQFEAPFGITMRELIEM-AGGIRDG-HQLKFWTPGGSSTPIFTEAELD 306

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ +   GS L T A+ V D +T +++ I R + FY+HESCG+CTPCREGT WM 
Sbjct: 307 -VPLDYESVGAAGSMLATRALQVFDETTSVVRVITRWTEFYQHESCGKCTPCREGTYWMK 365

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M RL  G  +  +IDLL E++ NI G++ CALGDAAA P++  I  FR   E  +   
Sbjct: 366 QIMLRLEAGRGKPGDIDLLDEIAGNIAGKSFCALGDAAATPVRSGIAKFREEFEAGLTTP 425

Query: 420 HRCNF 424
            R  F
Sbjct: 426 ARELF 430


>gi|195402651|ref|XP_002059918.1| GJ15106 [Drosophila virilis]
 gi|194140784|gb|EDW57255.1| GJ15106 [Drosophila virilis]
          Length = 501

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/419 (47%), Positives = 264/419 (63%), Gaps = 3/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           LTD DRIF NLYG     L  + +RG W     +LE G  WI++EVK SGLRGRGG+G+ 
Sbjct: 78  LTDCDRIFQNLYGRLDWRLKGACARGDWYRTADLLEMGPQWIMDEVKRSGLRGRGGSGYY 137

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G KW  + KV S +   L++N  E EPGTCKDR+I+RHEPH +IEGC++A FA+G    
Sbjct: 138 AGSKWEQLQKVES-KDKILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGFAMGCEKC 196

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IYVR  F  E  +LQ A+ E Y  GL+G NS   G   +I V  G   Y+ GEETAL+ 
Sbjct: 197 IIYVRNRFYNEACNLQFALAEAYRYGLIGCNSCDTGIKFEIHVQRG-DRYLTGEETALVN 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK  +PR +PP+    G +  P+TV N ES+AVVPTILRRGA W++  GR  N GTK
Sbjct: 256 CLMGKLARPRKRPPYLHEKGYFDHPSTVINTESLAVVPTILRRGAKWFTSLGRNMNFGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV +PCTVEE MS+   ++IE H GG+ GGW+NLLAV PGG S P +       
Sbjct: 316 LFNISGHVLHPCTVEEEMSMPLRDIIEMHAGGVCGGWNNLLAVWPGGLSTPLIGRAAAEE 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD L+  GS LGT  +IV+    D +  +     FY  ++C QCTPCR+G  W+  
Sbjct: 376 VLMDYDALEAKGSELGTGGIIVVCNDCDPLLVMQHTIEFYMKQTCKQCTPCRDGAIWLPE 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + +   +G +    ++ +  +SK + G TICAL D+ A   +GLI++F P IEERI +Y
Sbjct: 436 IFKNFTRGESVPHMMEFIEVISKTMTGTTICALSDSQANVARGLIQHFGPYIEERIIEY 494


>gi|145596571|ref|YP_001160868.1| NADH-quinone oxidoreductase, F subunit [Salinispora tropica
           CNB-440]
 gi|145305908|gb|ABP56490.1| NADH-quinone oxidoreductase, F subunit [Salinispora tropica
           CNB-440]
          Length = 443

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 191/381 (50%), Positives = 246/381 (64%), Gaps = 8/381 (2%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK----VCSDRPHYLVVNADESEP 89
           K ++   D +I  VK SGLRGRGGAGF TG+KW F+P+        RPHYLVVNADE EP
Sbjct: 42  KAMQAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQEPDGKAPTRPHYLVVNADEGEP 101

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GTCKD  +M H+PH+LIEG +IAS+AI A+ A+IY+RGE +     L+ AV E YA   L
Sbjct: 102 GTCKDLPLMTHDPHSLIEGVIIASYAIRANRAYIYIRGEAVHAARRLRHAVQEAYARNYL 161

Query: 150 GSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           G N    G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PPFPA  GLY  PT V
Sbjct: 162 GKNILGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPPFPATHGLYASPTVV 221

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           NNV +IA VP ++  GA+W+   G E + G  ++S+SG V  P   E SM +T  ELIE 
Sbjct: 222 NNVGTIASVPYLVLGGAAWWRTMGTEKSSGPMIYSLSGRVVNPGQYECSMGVTLRELIEL 281

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             GG+R G  +L    PGGSS P L A  +    +D++G+   GS LGT A  +      
Sbjct: 282 -AGGMRPG-HSLRFWTPGGSSTPLLTADHL-DVPLDFEGVAAAGSILGTTATQIFSDQDC 338

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
            + A +R   FY HESCG+CTPCREG  WM+RV  R++ G   + ++D L +   NI GR
Sbjct: 339 PVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILSGQGTQEDLDTLLDTCDNILGR 398

Query: 389 TICALGDAAAWPIQGLIKNFR 409
           + C LGD A  P+   +K F+
Sbjct: 399 SFCGLGDGATSPVTSSLKYFK 419


>gi|322436008|ref|YP_004218220.1| NADH dehydrogenase (quinone) [Acidobacterium sp. MP5ACTX9]
 gi|321163735|gb|ADW69440.1| NADH dehydrogenase (quinone) [Acidobacterium sp. MP5ACTX9]
          Length = 442

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/418 (46%), Positives = 261/418 (62%), Gaps = 7/418 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD---WIINEVKASGLRGRGGAGF 60
           D+  +    +G    ++   +    +  V   + +G +   WIIN +KASGLRGRGGAGF
Sbjct: 9   DEAIVLKRRFGQGAANIDKYLELDGYKAVQMAIAQGPEMPTWIINVMKASGLRGRGGAGF 68

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSF+PKV S++P Y++VN DESEPGTCKD  I   +PH +IEG +IA  AIG+  
Sbjct: 69  PTGLKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLEDPHAVIEGTMIAGLAIGSKL 127

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+RGE+    + ++ AV E YA G LG N    G D DII   GAGAY  GEE+AL+
Sbjct: 128 GFIYLRGEYRYLLKIVEKAVAEAYAKGFLGKNIFGSGIDFDIITQTGAGAYEVGEESALM 187

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR+KPPFPA VGLYG PT +NN E+IA  P IL  G   Y+  G E N GT
Sbjct: 188 ESLEGKRGVPRIKPPFPAVVGLYGGPTVINNAETIASAPHILLMGGEAYAKLGSERNGGT 247

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +LF ISGHV  P   E  M     + I +   G   G   L AV+PGGSS P L A ++ 
Sbjct: 248 RLFGISGHVERPGVYELPMGYNLKKAIYEVA-GGVKGGKKLKAVVPGGSSCPVLTADELD 306

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D + + G+ LG+  ++V+D +  I++   R+  FY+HESCG C PCREGT W+ 
Sbjct: 307 VG-LDFDQMGKAGTMLGSGGIVVLDETVSIVEFALRVISFYQHESCGWCIPCREGTDWIK 365

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + + R+  G   K+++D +  +++N+ GRT C LGDAAA P  G +K FR   E+ ID
Sbjct: 366 KTLARVYAGGGSKKDVDNVQYLAENMMGRTFCPLGDAAAMPTLGFVKKFRKEFEDYID 423


>gi|150375769|ref|YP_001312365.1| NADH-quinone oxidoreductase subunit F [Sinorhizobium medicae
           WSM419]
 gi|150030316|gb|ABR62432.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium medicae
           WSM419]
          Length = 421

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 193/412 (46%), Positives = 262/412 (63%), Gaps = 8/412 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           G  LS     G +  + K L E   D I+  VK S LRGRGGAGF TGMKWSF+PK  + 
Sbjct: 15  GHLLSTYQVGGGYQALTKALGEYTPDEIVELVKESNLRGRGGAGFPTGMKWSFVPKA-AG 73

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++Y+RGE++     
Sbjct: 74  KPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRR 133

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKP 193
           ++ A+ + + +G LG+   LG +   +VH   GAGAYICGEETA+LESLEGK+ QPRLKP
Sbjct: 134 MEQAIAQAHENGYLGTGI-LGSNFKFMVHIHRGAGAYICGEETAMLESLEGKRAQPRLKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY  PT +NNVE++A VP I+ RG++W+ G G + + G KL+ +SG V  P  
Sbjct: 193 PFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLYCVSGQVRKPGL 252

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  M I+  EL+E++ GG   G   + AVIPGG S P +P   +    MD+D L   GS
Sbjct: 253 YELPMGISLRELVEEYAGGPLPG-RKVKAVIPGGVSAPVIPESDLEVG-MDFDSLAAAGS 310

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LG+A V+V+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+ R+  G  +  
Sbjct: 311 MLGSAGVVVIDDSTCMVKIATRIIEFFHHESCGKCTPCREGLNWTVKVLRRIEAGEGETG 370

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC F 
Sbjct: 371 DLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRCPFH 421


>gi|269218342|ref|ZP_06162196.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212201|gb|EEZ78541.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 442

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 190/389 (48%), Positives = 248/389 (63%), Gaps = 6/389 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G ++ + K    G   +   +K SGL GRGGAGF TG+KWSF+P      P YLVVNADE
Sbjct: 33  GGYEGLAKAWSYGPGELTQLIKDSGLAGRGGAGFPTGLKWSFLPP-PDGGPRYLVVNADE 91

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           SEPGTCKD   +   PH LIEG  I   A+G H  F+Y+RGE +     L AAV +   +
Sbjct: 92  SEPGTCKDVPALMGNPHALIEGMAICLLAVGGHHGFVYLRGEVVHVYRRLMAAVRQAREA 151

Query: 147 GLLGS--NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           GL+G        YD++I VH GAGAYICGEETALL+SLEG++GQPRLKPPFPA  GLY  
Sbjct: 152 GLIGKAMGPDGDYDIEITVHAGAGAYICGEETALLDSLEGRRGQPRLKPPFPAAEGLYAR 211

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVE+I+ VP I+R G  W+   G E+ +G   FS+SGHV  P   E  + IT   
Sbjct: 212 PTVINNVETISSVPGIVRNGVEWFHAMGTESAKGHGFFSLSGHVKNPGQYEAPLGITART 271

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L++   GGIR G +     + GGSS P     Q+    +DY+ ++E GS L T A++V D
Sbjct: 272 LLDL-AGGIRPGHELKFWAV-GGSSAPLFTPEQLD-VPLDYNSVREAGSMLATRAIMVFD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +  +++ I R + FY+HESCG+CTPCREGT WM +V+ RL  G  +  ++DLLYE++ N
Sbjct: 329 ETVSVVRVISRWTDFYQHESCGKCTPCREGTYWMRQVVHRLEAGRGRPGDVDLLYEIASN 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I GR+ CALGDAAA P++  I+ FR   E
Sbjct: 389 IAGRSFCALGDAAATPVKSGIELFREEFE 417


>gi|297493962|gb|ADI40703.1| NADH dehydrogenase flavoprotein 1, 51kDa [Miniopterus schreibersii]
          Length = 275

 Score =  364 bits (934), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 169/260 (65%), Positives = 205/260 (78%), Gaps = 1/260 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 15  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 75  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVLRGAGAYICGEETALIE 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG +W++GFGRE N GTK
Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVSVSPTICRRGGAWFAGFGRERNSGTK 254

Query: 241 LFSISGHVNYPCTVEESMSI 260
           LF+ISGHVN+PCTVEE MS+
Sbjct: 255 LFNISGHVNHPCTVEEEMSV 274


>gi|198455798|ref|XP_001360108.2| GA20825 [Drosophila pseudoobscura pseudoobscura]
 gi|198135400|gb|EAL24682.2| GA20825 [Drosophila pseudoobscura pseudoobscura]
          Length = 445

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 193/420 (45%), Positives = 252/420 (60%), Gaps = 22/420 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W +   +LEKG DWI+ +               
Sbjct: 43  LHDCDRVFQNLYGRHDWRLKGACKRGDWYHTAVLLEKGSDWIMEQ--------------- 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
               W+F+    S +   LV+N  E EPGTCKDR+I+RHEPH +IEGC++A FA+G + A
Sbjct: 88  ----WNFLRCAESKQDKVLVMNCAEGEPGTCKDREIIRHEPHKIIEGCLLAGFAMGCNRA 143

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            IYVR  F  E  +LQ A+ E Y  GLLG S    G   DI+V  G   Y+CGEETAL++
Sbjct: 144 IIYVRNRFYNEACNLQFALAEAYRYGLLGPSACDTGIKFDILVQRG-DRYLCGEETALVK 202

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK G+PR +PPF    G +  P  V N ESIAV+PTILRRGASW++  GR  N GTK
Sbjct: 203 CLMGKIGRPRRRPPFLTEQGYFSHPCVVINAESIAVLPTILRRGASWWADLGRSYNSGTK 262

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG VN PCTVEE MS+   +LIEKH GG+RGGWDNLLA+ PGG S P +       
Sbjct: 263 LFNISGQVNSPCTVEEEMSMPMRDLIEKHAGGVRGGWDNLLAIFPGGLSTPLINKQVAGE 322

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD++ L+  GS  G+ A+IV+++ +D ++ + R   FY+  +C QCT CR+G  W+  
Sbjct: 323 VLMDFECLEAAGSSFGSGALIVVNKQSDPLQVMLRSIQFYEKHTCKQCTYCRDGAIWLPE 382

Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + +R VKG A   EID    + K I +   IC L          L+ NFRP IE+RI Q+
Sbjct: 383 LFDRFVKGEAHPHEIDWTLAIGKKIKDSNPICGLAQGQVNVAVSLVDNFRPYIEDRILQF 442


>gi|297625185|ref|YP_003706619.1| NADH-quinone oxidoreductase subunit F [Truepera radiovictrix DSM
           17093]
 gi|297166365|gb|ADI16076.1| NADH-quinone oxidoreductase, F subunit [Truepera radiovictrix DSM
           17093]
          Length = 447

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/370 (50%), Positives = 246/370 (66%), Gaps = 7/370 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           + +EVK SGLRGRGGAGF TG+KWSFMP V   R  ++V NADESEPG+ KDR IM  +P
Sbjct: 59  VTDEVKRSGLRGRGGAGFPTGVKWSFMPPV-DGRQRFIVCNADESEPGSFKDRYIMEDDP 117

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG  IA +AIGA    +Y+RGE+ R  E L+ A+ E  A GLLG +    G+D D+
Sbjct: 118 HQLLEGMAIAGYAIGATKGVLYIRGEYYRAYERLREAIAEARAEGLLGRDLFGSGFDFDV 177

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           I+H GAGAYICGEETAL+ S EG +  PRLKPPFPA  G+YG PTT+NNVES+A V  I+
Sbjct: 178 ILHRGAGAYICGEETALMNSFEGLRANPRLKPPFPAQAGVYGLPTTINNVESLASVVHII 237

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            RGA W++  G E+++GTKL+ +SG    P   E  M  TF ELI    GG+    + + 
Sbjct: 238 SRGADWFAAMGTEDSKGTKLYQLSGPAVRPGVYELPMGATFRELIFDLGGGVT---EPVK 294

Query: 282 AVIPGGSSVPCLP-AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
           A+IPGGSS P LP    +    MDY  + + GS LGT  VI++ R   I+ A W L  FY
Sbjct: 295 ALIPGGSSTPMLPFTDDVLDTPMDYGAIVKKGSMLGTGGVILIPRDKCIVNATWNLVRFY 354

Query: 341 KHESCGQCTPCREG-TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
            HESCG+CTPCREG +GWM ++ ++LV G+ +  +++L+  +++NI+G+  C L DA   
Sbjct: 355 AHESCGKCTPCREGISGWMTKMYQKLVAGLGEAGDLELIEMMAENIKGKAFCPLADACLG 414

Query: 400 PIQGLIKNFR 409
           P+   I +FR
Sbjct: 415 PVLSSIAHFR 424


>gi|54024631|ref|YP_118873.1| putative NADH dehydrogenase I chain F [Nocardia farcinica IFM
           10152]
 gi|54016139|dbj|BAD57509.1| putative NADH dehydrogenase I chain F [Nocardia farcinica IFM
           10152]
          Length = 441

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 193/374 (51%), Positives = 258/374 (68%), Gaps = 8/374 (2%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC----SDRPHYLVVNADESEPGTCKDRD 96
           D +I  VK +GLRGRGGAGF TGMKW F+P+      + +PHYLVVNADESEPGTCKD  
Sbjct: 41  DQVIQTVKDAGLRGRGGAGFPTGMKWGFIPQGPGPDGTVKPHYLVVNADESEPGTCKDIP 100

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKL 155
           ++   PH L+EG +IAS+AI A+ AFIY+RGE +     L+AAVD+ YA+GLLG +    
Sbjct: 101 LLMATPHALVEGAIIASYAIRANTAFIYLRGEVVPVLRRLRAAVDQAYAAGLLGRDILGS 160

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G+D+++IVH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT VNNVESIA
Sbjct: 161 GFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIA 220

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            VP ILR G  W+   G E + G  ++S+SGHV  P   E  + IT  EL++ +  G+R 
Sbjct: 221 SVPPILRYGTDWFRSMGSEKSPGFTIYSLSGHVTRPGQYEAPLGITLRELLD-YADGVRA 279

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
           G   L    PGGSS P     +     +DY+G+   GS LGT A+ + D +T +++A+ R
Sbjct: 280 G-HRLKFWTPGGSSTPLF-TDEHLDVPLDYEGVAAAGSMLGTKALQIFDETTCVVRAVLR 337

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
            + FY HESCG+CTPCREGT W+++++ R+  G   + ++D L +++ +I G++ CALGD
Sbjct: 338 WTEFYAHESCGKCTPCREGTYWLVQLLRRIETGGGTEADLDTLLDITDSINGKSFCALGD 397

Query: 396 AAAWPIQGLIKNFR 409
            AA PI   +K FR
Sbjct: 398 GAASPIVSSVKYFR 411


>gi|227822748|ref|YP_002826720.1| NADH dehydrogenase I chain F1 [Sinorhizobium fredii NGR234]
 gi|227341749|gb|ACP25967.1| NADH dehydrogenase I chain F1 [Sinorhizobium fredii NGR234]
          Length = 420

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/421 (46%), Positives = 261/421 (61%), Gaps = 9/421 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+    G  L+   + G +  + K+L E   D ++  VK S LRGRGGAGF TGMKW
Sbjct: 6   LLKNIDAPDGHVLATYEAGGGYQALAKVLREHTPDEVVELVKQSNLRGRGGAGFPTGMKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F+PK  SD+P YL  NADE EPGT KDR IM  +PH L+EG  ++++AIGA  A++YVR
Sbjct: 66  GFVPKQ-SDKPKYLCCNADEGEPGTFKDRIIMERDPHQLVEGLAVSAYAIGAETAYVYVR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEG 184
           GE+++    L+ A+ E    G LG+   LG D    I +H GAGAYICGEETA+LESLEG
Sbjct: 125 GEYVKAIRRLEQAIAEARDKGYLGAGI-LGSDFSFAIHIHCGAGAYICGEETAMLESLEG 183

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG  W+   G + + G KL+ +
Sbjct: 184 KRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGPHWFRAIGPDKSPGPKLYCV 243

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  M I   EL+E H GG   G   + AVIPGG S P +P G +    MD
Sbjct: 244 SGQVRKPGLYELPMGIPLRELVE-HAGGPLPG-RRIKAVIPGGVSAPVIPKGGLDVG-MD 300

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D L   GS LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+ R
Sbjct: 301 FDSLAAAGSMLGSAGVIVVDDSTCMVKVAARIVEFFHHESCGKCTPCREGLNWAVKVLRR 360

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +  G     +++ L ++ K I G T CALGD AA  ++  + +FR      I++  RC F
Sbjct: 361 IEAGEGAPGDLEQLEKLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFAAHIEE-RRCPF 419

Query: 425 Q 425
            
Sbjct: 420 H 420


>gi|171914655|ref|ZP_02930125.1| NADH-quinone oxidoreductase, F subunit [Verrucomicrobium spinosum
           DSM 4136]
          Length = 463

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/405 (49%), Positives = 255/405 (62%), Gaps = 16/405 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+   ++ G ++ + K +   R  II+EVK SGLRGRGGAGF TG+KW F+P   + +P 
Sbjct: 33  SIESFVANGGYEMLKKAVGMERQAIIDEVKKSGLRGRGGAGFPTGVKWGFIPPT-NTKPV 91

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADESEPGT KDR I+  +PH LIEG VIA FA+ A  A+IYVR EF      L+ 
Sbjct: 92  YLICNADESEPGTFKDRYILHQDPHQLIEGMVIACFAVKATLAYIYVREEFPEAAIILEK 151

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FP 196
           A+ E  A+  LG N    GYD+DI VH GAGAYICGEET L+ESLEGK+  PR+KPP FP
Sbjct: 152 ALAEARANNFLGKNILGTGYDLDIFVHRGAGAYICGEETGLIESLEGKRPYPRIKPPYFP 211

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A +GLY CPT VNNVES+  V  IL  G   Y+  G  NN GT++  +SG V  P   E 
Sbjct: 212 AALGLYMCPTIVNNVESLCHVKHILEMGGEEYAKLGTPNNTGTRILCVSGDVQKPGYFEV 271

Query: 257 SM-SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAI---MD 304
            +  +T  E+I   CGG++ G   L A+IPGGSS   L A        G+  G +   MD
Sbjct: 272 QVGKVTMGEVINDLCGGLKPG-RKLKAIIPGGSSAKVLRADEVFKLRDGRELGIMDIPMD 330

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D +   GS  G+  VI+MD S  +   I  L+ FY HESCGQCTPCREG+ WM ++ +R
Sbjct: 331 FDTMAACGSMAGSGGVIIMDDSRSMTWVINNLNNFYAHESCGQCTPCREGSLWMKKISDR 390

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +V G A   ++  L  V+ NIEG+TICA G+A +WP Q  +K FR
Sbjct: 391 IVAGEASPSDVAELERVANNIEGKTICAFGEACSWPTQSFVKKFR 435


>gi|294056100|ref|YP_003549758.1| NADH-quinone oxidoreductase, F subunit [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615433|gb|ADE55588.1| NADH-quinone oxidoreductase, F subunit [Coraliomargarita
           akajimensis DSM 45221]
          Length = 454

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/417 (47%), Positives = 264/417 (63%), Gaps = 21/417 (5%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           +  G ++++ K +    + I  EV  SG+RGRGGAGF  GMKW F+ +  S +P YLV N
Sbjct: 26  IKHGGYEDLKKAITMKPEDICQEVMESGVRGRGGAGFPAGMKWKFLDRK-SGKPIYLVCN 84

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
            DESEPGT KDR I+  +PH LIEG +I+++AI A  AFIY+RGEF +    L+ A++E 
Sbjct: 85  CDESEPGTFKDRQIVHKDPHQLIEGMMISAYAIQAKLAFIYIRGEFFQGYRILEQAIEEA 144

Query: 144 YASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FPANVGL 201
            A  LLG N    GY  DIIVH GAGAYICGEET L+ES+EG +  PR+KPP FPA +GL
Sbjct: 145 RAKNLLGDNILGSGYSCDIIVHRGAGAYICGEETGLIESIEGNRANPRIKPPYFPAALGL 204

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS-I 260
           Y CPT VNNVE++  V  I+  G   ++  G   N GT+ + +SGHV  P   E + + I
Sbjct: 205 YQCPTIVNNVETLCDVKHIVAMGGKGFADIGTPGNTGTRTWCVSGHVMKPGYYEFACADI 264

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-MRGAI--------------MDY 305
           T  ELI   CGG++ G   L AVIPGGSS   L A +  +G +              MD+
Sbjct: 265 TLGELIYDVCGGLKPG-RKLKAVIPGGSSAKVLRADERFKGKLKDGTEFDWGIEDIPMDF 323

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L   GS  G+  VIVMD STDI++A+  ++ FY HESCGQCTPCREG  W+ +V +R+
Sbjct: 324 DSLMACGSMSGSGGVIVMDDSTDIVEALANINYFYAHESCGQCTPCREGVPWLRKVTQRM 383

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQYHR 421
           V G A++ + DLL  ++  I GRTICA G+AA+WP+Q  I+ F+   +E+  +Q  R
Sbjct: 384 VDGEAREEDADLLKSIADQIAGRTICAFGEAASWPVQSFIEKFKDEFVEKAREQAAR 440


>gi|218295765|ref|ZP_03496561.1| NADH-quinone oxidoreductase, F subunit [Thermus aquaticus Y51MC23]
 gi|218243924|gb|EED10451.1| NADH-quinone oxidoreductase, F subunit [Thermus aquaticus Y51MC23]
          Length = 437

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 200/421 (47%), Positives = 270/421 (64%), Gaps = 20/421 (4%)

Query: 7   RIFTNLYGLQGK----SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
           R    LY   GK    +L   +++G ++   K+L EK  + +I EVK SGLRGRGGAGF 
Sbjct: 12  RFERTLYAHVGKEGSWTLDFYLAQGGYETAKKVLKEKTPEEVIEEVKRSGLRGRGGAGFP 71

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMPK    + HYL+ NADESEPG+ KDR I+   PH LIEG ++A +AI A   
Sbjct: 72  TGVKWSFMPK--DGQQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVG 129

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVRGE+ R  + L+AA+ E  A G LG N    G+  D+ VH GAGAYICGEETAL+ 
Sbjct: 130 YIYVRGEYRRAADRLEAAIAEARARGYLGQNLFGTGFSFDLHVHRGAGAYICGEETALMN 189

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +  PRLKPPFPA  GL+G PTT+NNVE++A V  IL RGA W++  G E ++G K
Sbjct: 190 SLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLAAVVPILERGADWFAQMGTEGSKGMK 249

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299
           L+ +SG V  P   E  M  TF ELI +  GG     + + A+IPGGSS P LP + ++ 
Sbjct: 250 LYQVSGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQALIPGGSSTPPLPFSEEVL 306

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWM 358
              M Y+ L+  GS LGT  VI++     ++ A+W L+ FY HESCG+CTPCREG  G+M
Sbjct: 307 DTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFM 366

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +  ++  G  ++++++ L  +   IEGR+ C L DAA WP++G +K+F+       DQ
Sbjct: 367 VNLFAKIGTGEGEEKDVETLEALLPLIEGRSFCPLADAAVWPVKGSLKHFK-------DQ 419

Query: 419 Y 419
           Y
Sbjct: 420 Y 420


>gi|196228496|ref|ZP_03127363.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus
           Ellin428]
 gi|196227899|gb|EDY22402.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus
           Ellin428]
          Length = 655

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/400 (48%), Positives = 258/400 (64%), Gaps = 16/400 (4%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           ++ G +  +++ L+   + I++EVK SGLRGRGGAGF  G+KW F+ K    +P YL+ N
Sbjct: 210 LNDGGYKQLEQALKMKPEEIVDEVKKSGLRGRGGAGFPCGVKWGFI-KRGGPKPTYLICN 268

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGT KDR I+  +PH LIEG VI+ FA+GA+ A+IY+RGEF    + L+ A+ E 
Sbjct: 269 ADESEPGTFKDRYIIHQDPHQLIEGMVISCFAVGANLAYIYIRGEFPEGAQILEKALAEA 328

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FPANVGL 201
            A   LG N    G+D +I VH GAGAYICGEET L+ESLEGK+  PR+KPP FPA +GL
Sbjct: 329 RAKNFLGKNILGSGFDCEIYVHRGAGAYICGEETGLIESLEGKRAYPRIKPPYFPAVLGL 388

Query: 202 YGCPTTVNNVESIAVVPTILRRGA-SWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMS 259
           Y CPT VNNVE++  V  IL  G  + Y+  G+ NN GT++  +SG V  P   E E  S
Sbjct: 389 YQCPTIVNNVETLCDVKHILAMGGGAGYAKLGKPNNTGTRILCVSGDVKKPGYYEVEVGS 448

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ----------MRGAIMDYDGLK 309
           +T  ELI   CGG+R G   L AVIPGGSS   L AG+          +    MD+D L 
Sbjct: 449 LTMGELINDVCGGLRDG-RTLKAVIPGGSSAKVLKAGEKYKLKDKEITLEEIPMDFDTLA 507

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
             GS  G+  VIVMD S D+++ +  ++ FY HESCGQCTPCREG  WM ++ +R+++G 
Sbjct: 508 AAGSMAGSGGVIVMDDSRDMVETLNNINEFYAHESCGQCTPCREGALWMKKITDRIIEGG 567

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
              ++ D+L  V+ NI G+TICA G+A +WP Q  +  FR
Sbjct: 568 GTAKDPDVLKNVADNIAGKTICAFGEACSWPTQSFVLKFR 607


>gi|327403949|ref|YP_004344787.1| NADH dehydrogenase subunit F [Fluviicola taffensis DSM 16823]
 gi|327319457|gb|AEA43949.1| NADH dehydrogenase subunit F [Fluviicola taffensis DSM 16823]
          Length = 447

 Score =  362 bits (930), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 205/424 (48%), Positives = 271/424 (63%), Gaps = 19/424 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S       G + +V+K L+      ++ EV+ASGLRGRGGAGF TGMKWSF+ K     
Sbjct: 16  ESFEVYRKNGGYRSVEKALKTMSPQNVVEEVQASGLRGRGGAGFPTGMKWSFLAKP-EGV 74

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YL+ NADESEPGT KDR +M   PH L+EG +++S+A+G + ++IY+RGE++   E +
Sbjct: 75  PRYLLCNADESEPGTFKDRYLMEKIPHLLVEGMIVSSYALGCNQSYIYIRGEYMWVLEIV 134

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ E YA+G LG N    GYD+D+ +  G GAYICGEETAL+ESLEGK+G PR+KPPF
Sbjct: 135 EKAIAEAYANGFLGKNILGSGYDLDLAIAPGGGAYICGEETALIESLEGKRGNPRIKPPF 194

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+GCPT VNNVESIA V  I+  G + Y+  G   + GTKL S  G++  P   E
Sbjct: 195 PAVKGLWGCPTVVNNVESIAAVVPIVNDGGAEYAKIGIGKSTGTKLISACGNLVKPGVYE 254

Query: 256 ESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDG 307
             + +T +E I  ++ CGGI  G   + A +PGGSSVP LPA  +         +M Y+G
Sbjct: 255 IELGMTVEEFIYSDEWCGGIANG-KKIKACVPGGSSVPILPANLITKTAEGVDRLMSYEG 313

Query: 308 LKE----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           L E     GS LG+   IV D    I++  W  + FY HESCGQC+PCREGTGWM +V+ 
Sbjct: 314 LAEGGFATGSMLGSGGFIVFDEDQCIVRNTWNFARFYAHESCGQCSPCREGTGWMEKVLR 373

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI---DQYH 420
           RL  G     +IDLL E++K IEG TIC LGDAAAWP+   I++FR   E  +   D+  
Sbjct: 374 RLENGQGHMHDIDLLAEINKKIEGNTICPLGDAAAWPVAAAIRHFREEFEWHVTHPDEAV 433

Query: 421 RCNF 424
           + NF
Sbjct: 434 KRNF 437


>gi|226306209|ref|YP_002766169.1| NADH-quinone oxidoreductase chain F [Rhodococcus erythropolis PR4]
 gi|226185326|dbj|BAH33430.1| NADH-quinone oxidoreductase chain F [Rhodococcus erythropolis PR4]
          Length = 439

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 205/407 (50%), Positives = 267/407 (65%), Gaps = 12/407 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77
           +L   + R  +  + K L    D +I  VK +GLRGRGGAGF TG+KWSF+P+V  D+P 
Sbjct: 18  TLDSYLRRDGYQALRKALATPPDAVIETVKDAGLRGRGGAGFPTGLKWSFIPQVSEDKPG 77

Query: 78  ----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
               HYLVVNADESEPGTCKD  +M   PHTL+EG +IA++AI A  AFIYVRGE +   
Sbjct: 78  DGKPHYLVVNADESEPGTCKDMPLMMATPHTLVEGVIIAAYAIRAAKAFIYVRGEVVPVL 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             LQ AV E YA+G LG N    G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+
Sbjct: 138 RRLQTAVAEAYAAGYLGRNVLGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQPRLR 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GLY CPT VNNVESIA VP+I+  G  W+   G E + G  L+S+SGHV  P 
Sbjct: 198 PPFPAVAGLYACPTVVNNVESIASVPSIVLGGPEWFRSMGSEKSPGFTLYSLSGHVTTPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  + IT  EL+E + GG+R G   L    PGGSS P     +     +DY+G+   G
Sbjct: 258 QYEAELGITLRELLE-YAGGVRAG-HTLKFWTPGGSSTPIF-TDEHLDVPLDYEGVGAAG 314

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT A+ + D +T I++A+ R + FY HESCG+CTPCREGT W+++++ RL  G   +
Sbjct: 315 SMLGTKALQIFDETTCIVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILRRLEGGTGTE 374

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++  L ++S  I G++ CALGD A  PI   +K FR   EE +  +
Sbjct: 375 ADLTKLLDISDTILGKSFCALGDGATSPIMSSLKYFR---EEYVAHF 418


>gi|15806512|ref|NP_295223.1| NADH dehydrogenase I subunit F [Deinococcus radiodurans R1]
 gi|6459262|gb|AAF11067.1|AE001994_3 NADH dehydrogenase I, F subunit [Deinococcus radiodurans R1]
          Length = 444

 Score =  362 bits (929), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 194/410 (47%), Positives = 255/410 (62%), Gaps = 11/410 (2%)

Query: 7   RIFTNLYGLQGKSLS---DSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           R    LY   G+  S   D+  RG  +  V +    G D +I EVK SGLRGRGGAGF+T
Sbjct: 17  RFAPTLYAQVGQPRSWTLDTYQRGGGYQGVRRAFALGPDAVIEEVKKSGLRGRGGAGFAT 76

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP +   +PH ++ NADESEPGT KDR +M  +PH LIEG +I  +A+ A   +
Sbjct: 77  GLKWSFMP-LNDGKPHLIICNADESEPGTFKDRYLMSEDPHQLIEGMLIGGYAMRASRGY 135

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+RGE++   E L AA+ E  A+GLLG +    G+D D+ VH GAGAYICGEETAL+ S
Sbjct: 136 IYIRGEYVLAAERLWAAIHEARAAGLLGKDILGSGFDFDLQVHRGAGAYICGEETALMNS 195

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEG +  PRLKPPFPA  GLYG PTT+NNVE+      IL+ GA W++G G E ++G KL
Sbjct: 196 LEGLRANPRLKPPFPAAAGLYGLPTTINNVETFCAATHILKYGADWHAGMGTEKSKGMKL 255

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-MRG 300
           F ISG V  P   E  +   F ELI    GG     +++ A+IPGG S   L   + +  
Sbjct: 256 FQISGPVARPGVYELPLGTPFRELIYDWAGGPT---EDIKAIIPGGISCQLLKWSEDILD 312

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMM 359
             MDY+ L   GS LGT  V ++  +  I+   W    FY HESCG+CTPCREG +GWM+
Sbjct: 313 TPMDYESLAAAGSSLGTGGVTLIPAAASIVDTTWNAVRFYGHESCGKCTPCREGISGWMV 372

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           R+ E+L +G  Q  + +L+ +++ NI GR+ CAL DA   P+   I+ FR
Sbjct: 373 RMYEKLARGHGQPGDTNLILDMADNIGGRSFCALADACLGPVLSSIRLFR 422


>gi|222839394|gb|EEE77731.1| predicted protein [Populus trichocarpa]
          Length = 391

 Score =  362 bits (928), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 195/366 (53%), Positives = 247/366 (67%), Gaps = 11/366 (3%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG------RDWIINEVKASGLRGRGGAGF 60
           +I+ +L G    S+ D  +RG +  + KIL K       +D +I  VK SGLRGRGGAGF
Sbjct: 29  QIYADLTGAN-WSIKDYEARGGYQALRKILGKDGSEGLTQDQVIATVKESGLRGRGGAGF 87

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+    + H LV N+DE EPGTCKDRDI+ H PH +IEG +IA++A+G   
Sbjct: 88  PTGLKWSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILVHNPHIVIEGMIIAAYAMGISL 146

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            + Y+ GE     E  +AA++E  A+G LG N     +   +  HHG GAYICGEETALL
Sbjct: 147 GYNYIHGEIFEAYERFEAALEEARAAGYLGDNIMGSSFSFQLHAHHGFGAYICGEETALL 206

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN GT
Sbjct: 207 ESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGGT 266

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS+SG VN P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  + 
Sbjct: 267 KIFSVSGDVNLPGNYEVPLGTPFSKLLEL-AGGVRTG-RKLKAVIPGGSSSPVLPADIIM 324

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDYD + + GS LG+ AVIVMD S D+++++ RLS FY+HESCGQCTPCREGTGW+ 
Sbjct: 325 ECTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLLRLSYFYQHESCGQCTPCREGTGWLW 384

Query: 360 RVMERL 365
           RV+ R+
Sbjct: 385 RVVNRI 390


>gi|146299001|ref|YP_001193592.1| NADH-quinone oxidoreductase, F subunit [Flavobacterium johnsoniae
           UW101]
 gi|146153419|gb|ABQ04273.1| NADH dehydrogenase subunit F [Flavobacterium johnsoniae UW101]
          Length = 456

 Score =  362 bits (928), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 194/406 (47%), Positives = 265/406 (65%), Gaps = 20/406 (4%)

Query: 27  GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           G + +V+K L+    D +  EVK SGLRGRGGAGF  GMKWSF+ K  S RP +LV NAD
Sbjct: 25  GGYASVEKALKTLTPDEVTEEVKKSGLRGRGGAGFPAGMKWSFIDKK-SGRPRHLVCNAD 83

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGT KDR +M + PH LIEG + +S+A+GA+ ++IY+RGE++   + L+ A+ E  A
Sbjct: 84  ESEPGTFKDRFLMEYIPHLLIEGMITSSYALGANLSYIYIRGEYMWVFKILERAIAEAKA 143

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG N    GYD+++ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA  GL+  
Sbjct: 144 AGWLGKNILGSGYDLELHVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAVSGLWAN 203

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT VNNVE+IA VP I+      Y+  G   + GTKL S SGH+  P   E  + ++ DE
Sbjct: 204 PTVVNNVETIATVPWIVNNSGDDYAKIGIGRSTGTKLISASGHIKNPGVYEIELGLSVDE 263

Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE---- 310
            +  +++ GG+      L A +PGGSSVP LPA        G+ R  +M Y+ L +    
Sbjct: 264 FMNSDEYLGGMSSS-RPLKAFVPGGSSVPILPAELIFKTANGEDR--LMTYESLSDGGFA 320

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LG+   IV + +  +++  W  + FY HESCGQCTPCREGTGW+ +++ R+  G  
Sbjct: 321 TGSMLGSGGFIVYNDTACVVRNTWNFARFYHHESCGQCTPCREGTGWLEKILWRIENGQG 380

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ +I+LL+ +   IEG TIC LGDAA+WP+   I++FR   E  +
Sbjct: 381 REEDIELLWSIQSKIEGNTICPLGDAASWPVAAAIRHFRDEFEYHV 426


>gi|297493960|gb|ADI40702.1| NADH dehydrogenase flavoprotein 1, 51kDa [Scotophilus kuhlii]
          Length = 275

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/260 (64%), Positives = 204/260 (78%), Gaps = 1/260 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 15  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 75  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG +W++ FGRE N GTK
Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVSVSPTICRRGGAWFASFGRERNSGTK 254

Query: 241 LFSISGHVNYPCTVEESMSI 260
           LF+ISGHVN+PCTVEE MS+
Sbjct: 255 LFNISGHVNHPCTVEEEMSV 274


>gi|227535966|ref|ZP_03966015.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244209|gb|EEI94224.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 450

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/405 (49%), Positives = 259/405 (63%), Gaps = 16/405 (3%)

Query: 26  RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           +G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+ K     P YLV N 
Sbjct: 24  QGGYRAVEKALKSMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLVCNG 82

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT KDR +M H PH L+EG +++S+A+GA+ ++IYVRGE + +   L+ A+ E  
Sbjct: 83  DESEPGTFKDRFLMTHIPHALVEGMIVSSYALGANTSYIYVRGEMMPQIRILEKAIAEAK 142

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            +G LG N    GYD++I V  G GAYICGEETALLESLEGK+G PR+KPPFPA  GLYG
Sbjct: 143 HAGFLGKNILGTGYDLEIYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAVAGLYG 202

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
           CPT VNNVESIA    I+  G   Y+  G + + GTKL S  G+V  P   E  + +  +
Sbjct: 203 CPTVVNNVESIAATVPIINDGGEEYAKIGIDRSTGTKLISAGGNVAKPGVYEIELGLPVE 262

Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE----M 311
           E I  +++CGGI  G   L AV+ GGSSVP LPA  +   I      M Y+ L +     
Sbjct: 263 EFIYSDEYCGGIANG-KRLKAVVAGGSSVPILPANLITKTINGESRLMSYESLADGGFAT 321

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ LG+   I  D    I++  W  + FY HESCGQC+PCREGTGWM +++ ++  G   
Sbjct: 322 GTMLGSGGFIAFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTGWMEKILHKIEMGKGS 381

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +IDLL++V + IEG TIC LGDAAAWP+   I++FR   E  I
Sbjct: 382 MADIDLLWDVQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHI 426


>gi|148656362|ref|YP_001276567.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus sp. RS-1]
 gi|148568472|gb|ABQ90617.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus sp. RS-1]
          Length = 449

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/387 (49%), Positives = 249/387 (64%), Gaps = 7/387 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E+    I+  VK SGLRGRGGAGF TG+KW F+PK     P YL+ N DESEPGT  +
Sbjct: 53  VTERTPADIVQTVKDSGLRGRGGAGFPTGVKWGFLPK--GVYPRYLLCNCDESEPGTFNN 110

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
             I+   PH LIEG  I+++AI AH A+IY+RGEF      L+ A+ + Y  G LG N  
Sbjct: 111 HQIIDRNPHQLIEGIAISAYAIEAHTAYIYIRGEFAAAARRLERAIAQAYERGFLGRNIF 170

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             GYD+DI VH GAGAYICGEETAL+ESLEGK GQPRL+PPFPA  GLYG PT +NNVE+
Sbjct: 171 GKGYDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLRPPFPAVAGLYGKPTIINNVET 230

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCG 271
           +  VP I+R GA+WY  FG E + GTK+FSISGHV  P   E    I   ELI    +C 
Sbjct: 231 LTNVPMIVRHGAAWYRQFGTEKSPGTKVFSISGHVKRPGNYEAPFGIPLRELIFSPDYCQ 290

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R    N+  V+PGG+S   L A  +    MDY+ L   GS LG+  VIV+D S   ++
Sbjct: 291 GMRSD-RNVKIVVPGGASAGWLTADDL-DVTMDYEALAAKGSMLGSGGVIVLDESVSAVE 348

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
             +++  F+KHESCG+CTPCREGT ++++V+ R+  G  +K +I LL++V   + G   C
Sbjct: 349 VAYKMDEFFKHESCGKCTPCREGTYFLVKVLHRITHGHGRKEDIPLLHDVYHQMAGNCFC 408

Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            LG++A  PI+  ++ F    E+ I Q
Sbjct: 409 LLGESAVVPIRSALRLFPHEFEQAIAQ 435


>gi|300771672|ref|ZP_07081547.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761661|gb|EFK58482.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 450

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/405 (49%), Positives = 259/405 (63%), Gaps = 16/405 (3%)

Query: 26  RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           +G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+ K     P YLV N 
Sbjct: 24  QGGYRAVEKALKSMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLVCNG 82

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT KDR +M H PH L+EG +++S+A+GA+ ++IYVRGE + +   L+ A+ E  
Sbjct: 83  DESEPGTFKDRFLMTHIPHALVEGMIVSSYALGANTSYIYVRGEMMPQIRILEKAIAEAK 142

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            +G LG N    GYD++I V  G GAYICGEETALLESLEGK+G PR+KPPFPA  GLYG
Sbjct: 143 HAGFLGKNILGTGYDLEIYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAVAGLYG 202

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
           CPT VNNVESIA    I+  G   Y+  G + + GTKL S  G+V  P   E  + +  +
Sbjct: 203 CPTVVNNVESIAATVPIINDGGEEYAKIGIDRSTGTKLISAGGNVAKPGVYEIELGLPVE 262

Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE----M 311
           E I  +++CGGI  G   L AV+ GGSSVP LPA  +   I      M Y+ L +     
Sbjct: 263 EFIYSDEYCGGIANG-KRLKAVVAGGSSVPILPANLITKTINGESRLMSYESLADGGFAT 321

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ LG+   I  D    I++  W  + FY HESCGQC+PCREGTGWM +++ ++  G   
Sbjct: 322 GTMLGSGGFIAFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTGWMEKILHKIEIGKGS 381

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +IDLL++V + IEG TIC LGDAAAWP+   I++FR   E  I
Sbjct: 382 MADIDLLWDVQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHI 426


>gi|159039970|ref|YP_001539223.1| NADH-quinone oxidoreductase, F subunit [Salinispora arenicola
           CNS-205]
 gi|157918805|gb|ABW00233.1| NADH-quinone oxidoreductase, F subunit [Salinispora arenicola
           CNS-205]
          Length = 443

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 193/381 (50%), Positives = 244/381 (64%), Gaps = 8/381 (2%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV----CSDRPHYLVVNADESEP 89
           K L    D +I  VK SGLRGRGGAGF TG+KW F+P+        RPHYLVVNADE EP
Sbjct: 42  KALGAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQEPDGRSPTRPHYLVVNADEGEP 101

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GTCKD  +M H+PH+LIEG +IAS+AI A+ A+IY+RGE +     L+ AV E YA G L
Sbjct: 102 GTCKDLPLMTHDPHSLIEGVIIASYAIRANRAYIYIRGEAVHAARRLRHAVQEAYARGYL 161

Query: 150 GSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           G N    G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PPFPA  GLY  PT V
Sbjct: 162 GRNILGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPPFPATHGLYASPTVV 221

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           NNV +IA VP I+  GA W+   G E + G  ++S+SG V  P   E SM IT  ELIE 
Sbjct: 222 NNVGTIASVPYIVSGGADWWRTMGTEKSSGPMIYSLSGRVVNPGQYECSMGITLRELIEL 281

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             GG++ G  +L    PGGSS P L A  +    +D++ +   GS LGT A  +      
Sbjct: 282 -AGGMQPG-HSLRFWTPGGSSTPLLTAEHL-DVPLDFEEVAAAGSILGTTATQIFSDQDC 338

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
            + A +R   FY HESCG+CTPCREG  WM+RV  R++ G   + ++D L +   NI GR
Sbjct: 339 PVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILSGQGTQEDLDTLLDTCDNILGR 398

Query: 389 TICALGDAAAWPIQGLIKNFR 409
           + C LGD A  P+   +K F+
Sbjct: 399 SFCGLGDGATSPVTSSLKYFK 419


>gi|313206211|ref|YP_004045388.1| NADH dehydrogenase subunit f [Riemerella anatipestifer DSM 15868]
 gi|312445527|gb|ADQ81882.1| NADH dehydrogenase subunit F [Riemerella anatipestifer DSM 15868]
 gi|315023104|gb|EFT36117.1| NADH-ubiquinone oxidoreductase chain F [Riemerella anatipestifer
           RA-YM]
 gi|325336342|gb|ADZ12616.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Riemerella anatipestifer RA-GD]
          Length = 453

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 198/401 (49%), Positives = 266/401 (66%), Gaps = 15/401 (3%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           +G +   +K L+   + I+ EVK SGLRGRGGAGF TG+KWSF+ K     P +LVVNAD
Sbjct: 24  QGGYQAAEKALKMNPEEILEEVKTSGLRGRGGAGFPTGLKWSFLAK-PEGVPRHLVVNAD 82

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGT KDR +M   PH LIEG +I+S+ +G++ ++IY+RGE+    + L+ A++E   
Sbjct: 83  ESEPGTFKDRYLMEFIPHLLIEGMLISSYCLGSNASYIYIRGEYSWIPDILEEAIEEAKK 142

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG N    G+D++I V  G GAYICGEETALLESLEG++G PRLKPPFPA  GL+  
Sbjct: 143 AGFLGKNILGSGFDLEIYVQRGGGAYICGEETALLESLEGRRGNPRLKPPFPAVKGLWER 202

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT VNNVESIA V  I+    + Y+  G   + GTKL S  G++N P   E  M+IT +E
Sbjct: 203 PTVVNNVESIAAVVPIINISGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMTITVEE 262

Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE----MG 312
            I  +++CGGI  G   L A IPGGSSVP +PA  +   I      M+Y+ L E     G
Sbjct: 263 FIYSDEYCGGIPNG-KRLKACIPGGSSVPIVPANLLLRTIDGKPRYMNYESLSEGGFATG 321

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           + +G+   IV+D    ++K    L+ FY HESCGQCTPCREGTGWM R+++++V+G  + 
Sbjct: 322 TMMGSGGFIVLDEDQSVVKHTMTLARFYNHESCGQCTPCREGTGWMYRILKKIVEGKGEM 381

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
            +IDLL+++ + IEG TIC LGDAAAWP+   I++FR   E
Sbjct: 382 SDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFE 422


>gi|284039947|ref|YP_003389877.1| NADH-quinone oxidoreductase, F subunit [Spirosoma linguale DSM 74]
 gi|283819240|gb|ADB41078.1| NADH-quinone oxidoreductase, F subunit [Spirosoma linguale DSM 74]
          Length = 446

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/409 (50%), Positives = 266/409 (65%), Gaps = 20/409 (4%)

Query: 26  RGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           +G +  V+K ++    + I+ EVK +G+RGRGGAGF  GMKWSF+ K     P YLV NA
Sbjct: 24  QGGYTAVEKTIKTMTPEAIVEEVKKAGVRGRGGAGFPMGMKWSFLAK-PEGVPRYLVCNA 82

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT KD  +M++ PH LIEG +I+SFA+GA+ +FIYVRGE +     L+ A+ E  
Sbjct: 83  DESEPGTFKDHYLMKNIPHLLIEGMIISSFALGANKSFIYVRGELMYVIHILEKAIAEAT 142

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
           A G LG N    GYD++++V  G GAYICGEETALLESLEGK+G PR KPPFPA  GLY 
Sbjct: 143 AKGFLGKNIMGSGYDLELVVQPGGGAYICGEETALLESLEGKRGNPRNKPPFPAVKGLYQ 202

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVESIA  P I+  G   Y+G G   + GTKL S SGH+N P   E  + +  +
Sbjct: 203 SPTVVNNVESIATTPWIVNNGGDAYAGVGIGRSTGTKLISASGHINKPGVYEIELGVPVE 262

Query: 264 ELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA--------GQMRGAIMDYDGLKE--- 310
           + I  ++ CGGIR G     A++ GGSSVP LPA        G+ R  +M Y+ L +   
Sbjct: 263 DFIYADEWCGGIRPG-HKFKALVAGGSSVPILPANLALTLANGEKR--LMSYESLSDGGF 319

Query: 311 -MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
             G+ LG+   IV D ++ I++  W  S FY HESCGQC+PCREGTGWM +V+ R+  G 
Sbjct: 320 ATGTMLGSGGFIVFDETSCIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKVLHRIEHGH 379

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +++IDLL +V+K IEG TIC LGDAAAWP+   I++FR   +  ID 
Sbjct: 380 GHQQDIDLLVDVAKKIEGNTICPLGDAAAWPVASAIRHFRDEFQWHIDN 428


>gi|315605125|ref|ZP_07880176.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313161|gb|EFU61227.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 434

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/418 (48%), Positives = 254/418 (60%), Gaps = 12/418 (2%)

Query: 8   IFTNLYGLQGKSLSDSM-SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I TN +G +     DS  +RG +  ++K        I+  VK SGLRGRGGAGF +G+KW
Sbjct: 14  IITNGWGEERSWTLDSYRARGGYLGLEKARAMDPADIVAAVKDSGLRGRGGAGFPSGLKW 73

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YLVVNADESEPGTCKD  ++   PH LIEG  I S AIG   AF+Y+R
Sbjct: 74  SFLPP-ADGGPRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE       L +AV E   +G+LG       D+ I  H GAGAYICGEETALL+SLEG++
Sbjct: 133 GEVTHVYRRLLSAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GLY  PT VNNVE+IA V  I R    W++  G E ++G  +FS+SG
Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPQWFASMGTEKSKGHGIFSVSG 245

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV  P   E    IT  ELI+   GGIR G   L    PGGSS P     ++    +DY+
Sbjct: 246 HVANPGQFEAPFGITMRELIDM-AGGIRQG-HTLKFWTPGGSSTPIFTQDELD-TPLDYE 302

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS LGT A+ V D +  +++ I R S FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +G  +  ++DLL E++ NI GR+ C LGDAAA PI   IK FR   E  +    R  F
Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420


>gi|111022877|ref|YP_705849.1| NADH dehydrogenase subunit F [Rhodococcus jostii RHA1]
 gi|110822407|gb|ABG97691.1| probable NADH dehydrogenase subunit F [Rhodococcus jostii RHA1]
          Length = 432

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 201/382 (52%), Positives = 263/382 (68%), Gaps = 5/382 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I+ VK +GLRGRGGAGF TGMKWSF+P+    +PHYLVVNADESE
Sbjct: 28  YEGLQKALRMDPDEVISTVKEAGLRGRGGAGFPTGMKWSFIPQ-GDAKPHYLVVNADESE 86

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  +M   PH L+EG +IA++AI A  AFIYVRGE +     LQAAV E YA+G 
Sbjct: 87  PGTCKDMPLMLATPHALVEGVIIAAYAIRAGHAFIYVRGEVVPVLRRLQAAVAEAYAAGY 146

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG+N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  PT 
Sbjct: 147 LGTNILDSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYASPTV 206

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  EL+E
Sbjct: 207 VNNVESIASVPPIIVNGIEWFRSMGSEKSPGFTLYSLSGHVTKPGQYEAPLGITLRELLE 266

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
            + GG+R G   L    PGGSS P      +  A +DY+G+   GS LGT A+ + D +T
Sbjct: 267 -YAGGVRAG-HRLKFWTPGGSSTPIFTDEHLDVA-LDYEGVGAAGSMLGTKALQIFDETT 323

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++ERL +G     +++ L +++ NI G
Sbjct: 324 CVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILERLERGEGTDADLEKLLDIADNILG 383

Query: 388 RTICALGDAAAWPIQGLIKNFR 409
           ++ CALGD AA PI   IK FR
Sbjct: 384 KSFCALGDGAASPIMSSIKYFR 405


>gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) chain f nuof [Rhodococcus equi 103S]
 gi|311888652|emb|CBH47964.1| NADH dehydrogenase (quinone) chain F NuoF [Rhodococcus equi 103S]
          Length = 688

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/390 (52%), Positives = 262/390 (67%), Gaps = 10/390 (2%)

Query: 27  GH--WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD----RPHYL 80
           GH  +  + K L    D +I  VK +GLRGRGGAGF TGMKWSF+P+  +     +PHYL
Sbjct: 268 GHDGYTALRKALRMNPDEVIQTVKDAGLRGRGGAGFPTGMKWSFIPQDPATDGTAKPHYL 327

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           VVNADESEPGTCKD  +M   PHTLIEG VIA++AI A  AF+YVRGE +     LQAAV
Sbjct: 328 VVNADESEPGTCKDIPLMFATPHTLIEGVVIAAYAIRAAQAFVYVRGEVVPVLRRLQAAV 387

Query: 141 DECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
            E Y +G LG +    GYD+DI+VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  
Sbjct: 388 AEAYDAGYLGRDILGSGYDLDIVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVA 447

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GLY  PT VNNVESIA VP I+ RG  W+ G G E + G  L+S+SGHV  P   E  + 
Sbjct: 448 GLYASPTVVNNVESIASVPPIILRGPEWFRGMGSEASPGFTLYSLSGHVTRPGQYEAPLG 507

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
           +T  +L++   GG+R G   L    PGGSS P L   +     +DY+G+   GS LGT A
Sbjct: 508 VTLRQLLDV-AGGVRAG-HRLKFWTPGGSSTPLL-TDEHLDVPLDYEGVAGAGSMLGTKA 564

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           + + D +T I++ + R + FY HESCG+CTPCREGT W+++++ERL +G     +++ L 
Sbjct: 565 LQIFDETTCIVRVVLRWTQFYAHESCGKCTPCREGTYWLVQILERLERGEGSAEDLEKLL 624

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +VS  I G++ CALGD AA PI   +K FR
Sbjct: 625 DVSDTILGKSFCALGDGAASPIMSSLKYFR 654


>gi|187736101|ref|YP_001878213.1| NADH dehydrogenase (quinone) [Akkermansia muciniphila ATCC BAA-835]
 gi|187426153|gb|ACD05432.1| NADH dehydrogenase (quinone) [Akkermansia muciniphila ATCC BAA-835]
          Length = 466

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 202/423 (47%), Positives = 266/423 (62%), Gaps = 22/423 (5%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+   ++ G ++ + K L      +I+EVK SGLRGRGGAGF TG+KW+F+P   + +P 
Sbjct: 31  SIDCYLADGGYEELKKALGMEPRAVIDEVKKSGLRGRGGAGFPTGVKWTFIPP-NNTKPV 89

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV N DESEPGT KDR I+  +PH LIEG VI+S+A+GAH A+IY+R EF    E +  
Sbjct: 90  YLVCNCDESEPGTFKDRYIVHQDPHQLIEGMVISSYAVGAHQAYIYMREEFPIAAEIMLK 149

Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FP 196
           A+ E    G LGSN +  GY+++I +H GAGAYICGEETALL SLEG +  PR+KPP FP
Sbjct: 150 ALQEARERGFLGSNIQGSGYNLEIHLHRGAGAYICGEETALLNSLEGDRPYPRIKPPYFP 209

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE- 255
           A +GLYGCPT VNNVES+  V  I+  G   YS  G + + GT++  +SG V  P   E 
Sbjct: 210 AAIGLYGCPTIVNNVESLCQVKHIMAMGGEAYSQEGAKRSPGTRIIGVSGDVKRPGFYEI 269

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL----------PAGQMRGAI--- 302
            S S+TF EL+   CGG R G     AVIPGGSS   +          P G M G I   
Sbjct: 270 VSGSMTFGELLYDVCGGPRDG-RQFKAVIPGGSSSKVMRTDAEYKVQNPDGTM-GKITFF 327

Query: 303 ---MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D D +   GS  G+ AVIVMD S  +  A+  ++ FY HESCGQCTPCREG  WMM
Sbjct: 328 DIPLDLDSIARHGSMSGSGAVIVMDDSRSMPWAMNNINRFYAHESCGQCTPCREGCPWMM 387

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++  R+++G A   ++DLL EV+  IEG+T+CA G+AA+WP Q ++  F+       D +
Sbjct: 388 KLSTRILEGKAAPSDVDLLIEVANQIEGKTVCAFGEAASWPTQAMVSKFKEEFVALTDPF 447

Query: 420 HRC 422
           + C
Sbjct: 448 NAC 450


>gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707]
 gi|325555402|gb|EGD25073.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707]
          Length = 688

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 206/390 (52%), Positives = 262/390 (67%), Gaps = 10/390 (2%)

Query: 27  GH--WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD----RPHYL 80
           GH  +  + K L    D +I  VK +GLRGRGGAGF TGMKWSF+P+  +     +PHYL
Sbjct: 268 GHDGYTALRKALRMNPDEVIQTVKDAGLRGRGGAGFPTGMKWSFIPQDPATDGTAKPHYL 327

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           VVNADESEPGTCKD  +M   PHTLIEG VIA++AI A  AF+YVRGE +     LQAAV
Sbjct: 328 VVNADESEPGTCKDIPLMFATPHTLIEGVVIAAYAIRAAQAFVYVRGEVVPVLRRLQAAV 387

Query: 141 DECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
            E Y +G LG +    GYD+DI+VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  
Sbjct: 388 AEAYDAGYLGRDILGSGYDLDIVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVA 447

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GLY  PT VNNVESIA VP I+ RG  W+ G G E + G  L+S+SGHV  P   E  + 
Sbjct: 448 GLYASPTVVNNVESIASVPPIILRGPEWFRGMGSEASPGFTLYSLSGHVTRPGQYEAPLG 507

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
           IT  +L++   GG+R G   L    PGGSS P L   +     +DY+G+   GS LGT A
Sbjct: 508 ITLRQLLDV-AGGVRAG-HRLKFWTPGGSSTPLL-TDEHLDVPLDYEGVAGAGSMLGTKA 564

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           + + D +T I++ + R + FY HESCG+CTPCREGT W+++++ERL +G     +++ L 
Sbjct: 565 LQIFDETTCIVRVVLRWTQFYAHESCGKCTPCREGTYWLVQILERLERGEGSVEDLEKLL 624

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +VS  I G++ CALGD AA PI   +K FR
Sbjct: 625 DVSDTILGKSFCALGDGAASPIMSSLKYFR 654


>gi|302035987|ref|YP_003796309.1| NADH-quinone oxidoreductase subunit F [Candidatus Nitrospira
           defluvii]
 gi|300604051|emb|CBK40383.1| NADH-quinone oxidoreductase, subunit F [Candidatus Nitrospira
           defluvii]
          Length = 435

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/394 (47%), Positives = 256/394 (64%), Gaps = 6/394 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEV-KASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           SL++    G +  + K+L K     +  V   SGLRGRGGAGF TG+KW F+PK     P
Sbjct: 20  SLAEYERAGGYQAIRKVLGKVSPADVTAVVMKSGLRGRGGAGFPTGVKWGFLPKDYQG-P 78

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL  NADESEPGT KDR ++  +PH L+EG ++A +AIGA  ++IY+RGEF+   + L+
Sbjct: 79  RYLCCNADESEPGTFKDRQLIERDPHQLLEGMLLACYAIGAASSYIYIRGEFVLGAKILE 138

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E  A+G +G N       +DI VH GAGAYICGEETALLESLEGK+G PR+KPPFP
Sbjct: 139 QAINEARAAGYVGKNIFGSNTTIDIWVHRGAGAYICGEETALLESLEGKRGLPRVKPPFP 198

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255
           A  GLY  PT VNNVE++A +P IL RGA W++  G    + GT++F +SGHV  P   E
Sbjct: 199 ATHGLYNKPTVVNNVETLANLPHILNRGAEWFASIGSPPKSTGTRVFCVSGHVARPGNYE 258

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M ITF ELI +  GG+R     L A IPGG+S P L    +    +D++ +   GS L
Sbjct: 259 VPMGITFRELIYEQAGGMRSD-KKLKAFIPGGASAPFLTPDHLD-VKLDFESVALAGSML 316

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  V VM+  TD++ A  RL  F+ HESCG+C+PCREG+ W++++M R+V    Q  ++
Sbjct: 317 GSGGVTVMEEGTDMVWAALRLMEFFYHESCGKCSPCREGSSWLVQIMRRIVNKRGQLADL 376

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + L ++ KNI GRT+CA GDA   PI   +K++R
Sbjct: 377 ETLTDLCKNIAGRTVCAFGDAEVSPILSTLKHWR 410


>gi|294506289|ref|YP_003570347.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Salinibacter ruber M8]
 gi|294342617|emb|CBH23395.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Salinibacter ruber M8]
          Length = 453

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 180/389 (46%), Positives = 259/389 (66%), Gaps = 9/389 (2%)

Query: 27  GHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           G +D + ++LE        + +EVKASGL GRGGAGF TG+KW+FMP+   +RP ++ VN
Sbjct: 38  GGYDRLRRVLEDDAFEPSDVTDEVKASGLTGRGGAGFPTGIKWTFMPEP-DERPRFIGVN 96

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGT KDR +M + PH ++EG ++A +A+    A++Y+RGE+      L+  ++  
Sbjct: 97  ADESEPGTFKDRQVMEYNPHLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQLENA 156

Query: 144 YASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
           Y +G +G N  +G D  +DI++H GAGAYICGEET+L+ESLEGK+G PR KPPFPA  G+
Sbjct: 157 YEAGYVGENI-MGSDFTMDIVLHKGAGAYICGEETSLMESLEGKRGYPRYKPPFPAQSGI 215

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
           +G PTT+NN E++A VP I+ +G   YS  G  +  G  L+ +SGHV  P   E    + 
Sbjct: 216 FGSPTTINNAETLAHVPLIVEQGGEAYSNIGAGDMPGPALYGMSGHVKNPGVYEFPTGML 275

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
             ++I   CGG+    D L AV+PGGSSVP +PA Q+ G  M+ + L E+GS  GT   +
Sbjct: 276 LTDMIYDVCGGMARDKD-LKAVVPGGSSVPPVPADQIDGISMNDESLGEVGSRTGTFCPL 334

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
           V+D  TD++  + R++ FY+ E+CGQCTPCREGT W+ +++ R+ +G  + R+IDLL E+
Sbjct: 335 VLDEETDMVSFLRRVAHFYQDETCGQCTPCREGTSWLEKILARIDEGEGRMRDIDLLLEL 394

Query: 382 SKNIE-GRTICALGDAAAWPIQGLIKNFR 409
             N++ GRTICA  D A  P++  +K FR
Sbjct: 395 CDNMDGGRTICAFADGAVGPVRATVKRFR 423


>gi|83814696|ref|YP_444543.1| respiratory-chain NADH dehydrogenase 51 Kd subunit family protein
           [Salinibacter ruber DSM 13855]
 gi|83756090|gb|ABC44203.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Salinibacter ruber DSM 13855]
          Length = 464

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 180/389 (46%), Positives = 259/389 (66%), Gaps = 9/389 (2%)

Query: 27  GHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           G +D + ++LE        + +EVKASGL GRGGAGF TG+KW+FMP+   +RP ++ VN
Sbjct: 49  GGYDRLRRVLEDDAFEPSDVTDEVKASGLTGRGGAGFPTGIKWTFMPEP-DERPRFIGVN 107

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGT KDR +M + PH ++EG ++A +A+    A++Y+RGE+      L+  ++  
Sbjct: 108 ADESEPGTFKDRQVMEYNPHLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQLENA 167

Query: 144 YASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
           Y +G +G N  +G D  +DI++H GAGAYICGEET+L+ESLEGK+G PR KPPFPA  G+
Sbjct: 168 YEAGYVGENI-MGSDFTMDIVLHKGAGAYICGEETSLMESLEGKRGYPRYKPPFPAQSGI 226

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
           +G PTT+NN E++A VP I+ +G   YS  G  +  G  L+ +SGHV  P   E    + 
Sbjct: 227 FGSPTTINNAETLAHVPLIVEQGGEAYSNIGAGDMPGPALYGMSGHVKNPGVYEFPTGML 286

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
             ++I   CGG+    D L AV+PGGSSVP +PA Q+ G  M+ + L E+GS  GT   +
Sbjct: 287 LTDMIYDVCGGMARDKD-LKAVVPGGSSVPPVPADQIDGISMNDESLGEVGSRTGTFCPL 345

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
           V+D  TD++  + R++ FY+ E+CGQCTPCREGT W+ +++ R+ +G  + R+IDLL E+
Sbjct: 346 VLDEETDMVSFLRRVAHFYQDETCGQCTPCREGTSWLEKILARIDEGEGRMRDIDLLLEL 405

Query: 382 SKNIE-GRTICALGDAAAWPIQGLIKNFR 409
             N++ GRTICA  D A  P++  +K FR
Sbjct: 406 CDNMDGGRTICAFADGAVGPVRATVKRFR 434


>gi|332669454|ref|YP_004452462.1| NADH-quinone oxidoreductase subunit F [Cellulomonas fimi ATCC 484]
 gi|332338492|gb|AEE45075.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas fimi ATCC 484]
          Length = 446

 Score =  359 bits (922), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 196/372 (52%), Positives = 245/372 (65%), Gaps = 5/372 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  VK SGLRGRGGAGF TGMKW F+P      P YLVVNADESEPGTCKD  +M   P
Sbjct: 44  VVTMVKESGLRGRGGAGFPTGMKWGFLP-APDGGPRYLVVNADESEPGTCKDIPLMMASP 102

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
             L+EG +I S+AIG H AF+YVRGE +     L  A++E  A+G LG N    G+D++I
Sbjct: 103 QHLVEGMIITSYAIGCHHAFLYVRGEVLHVYRRLLHAIEEARAAGYLGRNILGSGFDLEI 162

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +H GAGAYICGEETALL+SLEG +GQPRLKPPFPA  GLY  PT VNNVESIA VP I+
Sbjct: 163 TLHAGAGAYICGEETALLDSLEGLRGQPRLKPPFPAVAGLYARPTVVNNVESIASVPGIV 222

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R GA W+ G G E + G  LFS+SGHV  P   E  + IT  EL++   GGIR G   + 
Sbjct: 223 RGGADWFKGMGTERSTGHGLFSLSGHVTRPGQYEAPLGITLRELLDM-AGGIREG-HQVK 280

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
              PGGSS P   A  +    +DY+ +   GS LGT A+ + D +T +++A+ R   FYK
Sbjct: 281 FWTPGGSSTPIFTAEHLD-VPLDYESVGAAGSMLGTRALQIFDETTSVVRAVTRWLEFYK 339

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
           HESCG+CTPCREGT W+++V++R+  G     +IDLL ++  NI GR  CALGD A  PI
Sbjct: 340 HESCGKCTPCREGTYWLVQVLKRIEAGRGTHEDIDLLLDLCDNILGRAFCALGDGATSPI 399

Query: 402 QGLIKNFRPLIE 413
              ++ FR   E
Sbjct: 400 TSAVQYFREEFE 411


>gi|289751828|ref|ZP_06511206.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           T92]
 gi|289692415|gb|EFD59844.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           T92]
          Length = 380

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 190/377 (50%), Positives = 246/377 (65%), Gaps = 28/377 (7%)

Query: 16  QGKSLSDSMSRGHWDN--------------------VDKILEKGRDWIINEVKASGLRGR 55
           Q   L+  +SR HWD+                    + K L    D +I+ VK SGLRGR
Sbjct: 4   QATPLTPVISR-HWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGR 62

Query: 56  GGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           GGAGF+TG KWSF+P+     + +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA
Sbjct: 63  GGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIA 122

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYI 171
           ++AI AH AF+YVRGE +     L  AV E YA+G LG N    G+D++++VH GAGAYI
Sbjct: 123 AYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYI 182

Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
           CGEETALL+SLEG++GQPRL+PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   
Sbjct: 183 CGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSM 242

Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           G E + G  L+S+SGHV  P   E  + IT  EL++ + GG+R G   L    PGGSS P
Sbjct: 243 GSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD-YAGGVRAG-HRLKFWTPGGSSTP 300

Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351
            L   +     +DY+G+   GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPC
Sbjct: 301 LL-TDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPC 359

Query: 352 REGTGWMMRVMERLVKG 368
           REGT W+ ++ ERL  G
Sbjct: 360 REGTFWLDKIYERLETG 376


>gi|296130546|ref|YP_003637796.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas flavigena DSM
           20109]
 gi|296022361|gb|ADG75597.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas flavigena DSM
           20109]
          Length = 444

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 201/388 (51%), Positives = 247/388 (63%), Gaps = 5/388 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G +  + K L      ++  VK SGLRGRGGAGF TGMKW F+P      P YLVVNADE
Sbjct: 27  GGYRGLRKALTMAPADVVTTVKDSGLRGRGGAGFPTGMKWGFLP-APDGGPRYLVVNADE 85

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           SEPGTCKD  +M   P  LIEG +I S+AIG H AFIYVRGE +     L  AV E   +
Sbjct: 86  SEPGTCKDIPLMMASPQELIEGVIITSYAIGCHHAFIYVRGEVVHVYRRLLEAVREAREA 145

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           G LG++    G+D++I VH GAGAYICGEETALL+SLEG +GQPRLKPPFPA  GLY  P
Sbjct: 146 GYLGTDILGSGFDLEITVHAGAGAYICGEETALLDSLEGLRGQPRLKPPFPAVAGLYARP 205

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T VNNVES+A VP I+  GA W++  G E + G  LFS+SGHV  P   E  + IT  EL
Sbjct: 206 TVVNNVESVASVPGIIVGGADWFTSMGTERSAGHGLFSLSGHVTRPGQYEAPLGITLREL 265

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           ++   GG+R G   L    PGGSS P   A  +    +DY+ + + GS LGT A+ + D 
Sbjct: 266 LDM-AGGVREG-HELKFWTPGGSSTPIFTAEHLD-VPLDYESVGKAGSMLGTRALQIFDE 322

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           +T ++KA+ R   FYKHESCG+CTPCREGT W+ +VM RL  G     +IDLL ++  NI
Sbjct: 323 TTSVVKAVSRWIQFYKHESCGKCTPCREGTFWLAQVMARLEAGQGTSADIDLLLDLCDNI 382

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIE 413
            GR  CALGD A  P+   I+ FR   E
Sbjct: 383 LGRAFCALGDGATSPVTSAIQYFREEFE 410


>gi|218508846|ref|ZP_03506724.1| NADH dehydrogenase I subunit F [Rhizobium etli Brasil 5]
          Length = 196

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/196 (85%), Positives = 182/196 (92%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF TG+KWSFMPK    RPHYLVVN
Sbjct: 1   MSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVVN 60

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ A+IYVRGE+IRERE+LQAA+DEC
Sbjct: 61  ADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANAAYIYVRGEYIREREALQAAIDEC 120

Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
           Y  GLLG N+KLG+D+DI VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN+GLYG
Sbjct: 121 YDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYG 180

Query: 204 CPTTVNNVESIAVVPT 219
           CPTTVNNVESIAV PT
Sbjct: 181 CPTTVNNVESIAVAPT 196


>gi|156743330|ref|YP_001433459.1| NADH-quinone oxidoreductase subunit F [Roseiflexus castenholzii DSM
           13941]
 gi|156234658|gb|ABU59441.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus castenholzii
           DSM 13941]
          Length = 451

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/387 (48%), Positives = 249/387 (64%), Gaps = 7/387 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E+    I+  VK SGLRGRGGAGF TG+KW F+PK     P YL+ N DESEPGT  +
Sbjct: 55  VTERTPADIVQTVKDSGLRGRGGAGFPTGVKWGFLPK--GVYPRYLLCNCDESEPGTFNN 112

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
             I+   PH LIEG  I+++AI A+ A+IY+RGEF      L+ A+ + YA G LG N  
Sbjct: 113 HQIIDRNPHQLIEGIAISAYAIEANLAYIYIRGEFAAAARRLERAIAQAYARGFLGRNIF 172

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             GYD+DI VH GAGAYICGEETAL+ESLEGK GQPRL+PPFPA  GLYG PT +NNVE+
Sbjct: 173 GTGYDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLRPPFPAVAGLYGKPTIINNVET 232

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCG 271
           +  VP I+R GA WY  FG E + GTK+FS+SGHV  P   E        ELI   ++C 
Sbjct: 233 LTNVPMIVRHGAVWYRQFGTEKSPGTKVFSVSGHVKRPGNYEAPFGTPLRELIFSPEYCQ 292

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+RG   N+  V+PGG+S   L A  +    MDY+ L   GS LG+  VIV+D   + ++
Sbjct: 293 GMRGN-HNVKIVVPGGASAGWLTADDL-DVTMDYEALAAKGSMLGSGGVIVLDERVNAVE 350

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
             +++  F+KHESCG+CTPCREGT ++++V+ R+  G  ++ +I LL++V   + G   C
Sbjct: 351 VAYKMDEFFKHESCGKCTPCREGTYFLVKVLHRITHGHGRQDDIPLLHDVYNQMAGNCFC 410

Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            LG++A  PI+  ++ F    E  I Q
Sbjct: 411 LLGESAVVPIRSALRLFPHEFERAIAQ 437


>gi|320095553|ref|ZP_08027217.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977531|gb|EFW09210.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 433

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 199/406 (49%), Positives = 246/406 (60%), Gaps = 11/406 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L     RG +  +++        II+ VKASGLRGRGGAGF TG+KWSF+P      P 
Sbjct: 25  TLDSYRQRGGYQGLERARTMEPAAIIDAVKASGLRGRGGAGFPTGLKWSFLPP-DDGGPR 83

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD  ++   PH LIEG  I S AIG   AF+Y+RGE       L  
Sbjct: 84  YLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLRGEVAHVYRRLLR 143

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           AV E   SG+LG        + I  H GAGAYICGEETALL+SLEG++G PRLKPPFPA 
Sbjct: 144 AVREATESGVLGG-------LRITAHAGAGAYICGEETALLDSLEGRRGHPRLKPPFPAV 196

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GLY  PT VNNVE+IA V  + R    WYS  G + ++G  +FS+SGHV  P   E   
Sbjct: 197 AGLYARPTVVNNVETIAQVAGVFRNSPEWYSSMGTDKSKGHGIFSLSGHVANPGQFEAPF 256

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  ELI+   GGIR G   L    PGGSS P     ++    +DY+ +   GS LGT 
Sbjct: 257 GITMRELIDM-AGGIRQG-HRLKFWTPGGSSTPIFTEDELD-TPLDYESVGAAGSMLGTR 313

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           A+ V D +  +++ I R S FY+HESCG+CTPCREGT W+ ++M RL +G     ++DLL
Sbjct: 314 ALQVFDETVSVVRVIARWSEFYQHESCGKCTPCREGTYWIKQIMLRLERGEGLPGDVDLL 373

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            E++ NI GR+ C LGDAAA PI   IK FR   E  +    R  F
Sbjct: 374 DEIAHNIAGRSFCPLGDAAATPIMSGIKRFREEFEAGLTTPARERF 419


>gi|296140856|ref|YP_003648099.1| NADH-quinone oxidoreductase, F subunit [Tsukamurella paurometabola
           DSM 20162]
 gi|296028990|gb|ADG79760.1| NADH-quinone oxidoreductase, F subunit [Tsukamurella paurometabola
           DSM 20162]
          Length = 446

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/415 (50%), Positives = 271/415 (65%), Gaps = 13/415 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP-------- 70
           +L+   + G +  +D+ L    D +I  VK +GLRGRGGAGF TG+KWSF+P        
Sbjct: 20  TLASYRASGGYTGIDRALAMTPDQVIELVKEAGLRGRGGAGFPTGLKWSFIPQLRAGEEP 79

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K  +D+PHYLVVNADESEPGTCKD  +M   PHTLIEG +IAS+AI A  AFIYVRGE +
Sbjct: 80  KPGADKPHYLVVNADESEPGTCKDMPLMFATPHTLIEGVIIASYAIRARQAFIYVRGEVL 139

Query: 131 RERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
             +  L+AAV E YA+G LG    + G+ VD++VH GAGAYICGEETALL+SLEG++GQP
Sbjct: 140 GVQRRLRAAVAEAYAAGYLGKPLGENGFTVDLVVHGGAGAYICGEETALLDSLEGRRGQP 199

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RL+PPFPA  GLY  PT VNNVESIA VP IL  GA W+   G E + G  L+S+SGHV 
Sbjct: 200 RLRPPFPAVAGLYASPTCVNNVESIASVPAILANGADWFRTMGSEKSPGFTLYSVSGHVV 259

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P   E ++ IT  E++E   GG+R G   L    PGGSS P L A  +    +DY+G+ 
Sbjct: 260 RPGQYEAALGITLREMLEL-AGGVRPG-HELKFWTPGGSSTPLLTAEHL-DVPLDYEGVA 316

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
             GS LGT A+ + D +  +++A+ R   FY HESCG+CTPCREGT W++R++ RL +G 
Sbjct: 317 GAGSMLGTKALQIFDDTVCVVRAVLRWLEFYAHESCGKCTPCREGTYWLVRLLRRLEQGE 376

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            +  ++  L +V+  + G+  CALGD AA PIQ  +  FR   E  + +   C F
Sbjct: 377 GEPEDLTTLADVADGVLGKAFCALGDGAASPIQSSLTYFREEYERHVHE-RGCPF 430


>gi|222526373|ref|YP_002570844.1| NADH-quinone oxidoreductase subunit F [Chloroflexus sp. Y-400-fl]
 gi|222450252|gb|ACM54518.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus sp. Y-400-fl]
          Length = 434

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 186/388 (47%), Positives = 252/388 (64%), Gaps = 9/388 (2%)

Query: 26  RGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
            G W+     L EK    I+  VK SGLRGRGGAGF TG+KW F+PK     P YL+ N 
Sbjct: 26  HGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTGIKWGFLPK--GVYPRYLLCNC 83

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT  +  I+   PH LIEG  ++++AI A+ A+IY+RGEF     +L+ A+ + Y
Sbjct: 84  DESEPGTFNNHQIIDKNPHQLIEGVALSAYAIEANTAYIYMRGEFAAAARTLERAIAQAY 143

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            +G LG N    G+D+DI VH GAGAYICGEETAL+ESLEGK GQPRLKPPFPA  GLYG
Sbjct: 144 EAGFLGKNIFGTGFDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLKPPFPAVAGLYG 203

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT +NNVE++A VP I+ +G +WY   G E + GTK FS+SGHVN P   E    +   
Sbjct: 204 KPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCFSLSGHVNRPGNYELPFGVPLR 263

Query: 264 ELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
           ELIE  ++ GG++GG   +  +IPGG+S P L A  +    +DY+ +   GS LG+ AVI
Sbjct: 264 ELIESPEYGGGMKGG-RPVKIIIPGGASAPWLTADHLD-VPLDYESVAAAGSMLGSGAVI 321

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV-KGIAQKREIDLLYE 380
           V++ +       +++  F+KHESCG+CTPCREGT W++R + R+V +G A   +ID L+ 
Sbjct: 322 VLNDTVSAPHVAYKMDEFFKHESCGKCTPCREGTHWLVRTLHRMVEEGHATAADIDTLHS 381

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + + + G   C LG++A  PI+  ++ F
Sbjct: 382 IYRQMAGNCFCLLGESAVMPIKSALQLF 409


>gi|94968339|ref|YP_590387.1| NADH-quinone oxidoreductase, F subunit [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550389|gb|ABF40313.1| NADH dehydrogenase subunit F [Candidatus Koribacter versatilis
           Ellin345]
          Length = 439

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/415 (46%), Positives = 259/415 (62%), Gaps = 4/415 (0%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           D+ ++ ++ +G     +   +    +  V K L    D IINEVKAS LRGRGGAGF TG
Sbjct: 9   DEVKVISSRWGKGATDIDRYLELDGYKAVQKALTMTPDAIINEVKASNLRGRGGAGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSF+PK  S +P Y++ N DESEPGTCKDR I  H+PH +IEG +IA  A+GA  A+I
Sbjct: 69  LKWSFVPKE-SAKPKYILCNGDESEPGTCKDRLIFEHDPHGVIEGAIIAGLAVGAKSAYI 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE+      +Q A+ + YA G +G N    G D D+  H GAGAY  GEE+AL+ESL
Sbjct: 128 YLRGEYRYLSIIMQKAIADAYAKGFIGKNIFGSGKDFDVYWHGGAGAYEVGEESALMESL 187

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G PR++PPFPA VGL+G PT +NN E++A VP IL  G   Y+  G   N GT+LF
Sbjct: 188 EGKRGIPRIRPPFPAVVGLWGGPTVINNAETLAAVPAILLMGGQKYADLGTPRNGGTRLF 247

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG++  P   E  M     ++I +  GG   G   L AV+PGGSS P L A ++  A 
Sbjct: 248 CLSGNLEKPGVYELPMGYNLKKMIYE-VGGGIQGGRGLKAVVPGGSSTPVLTADEIDIA- 305

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D + + GS LG+  V+V+D  T I+K   R   FY+HESCG C PCREGT W+ + +
Sbjct: 306 MDFDSVMKAGSMLGSGGVVVLDDRTCIVKFALRTIKFYQHESCGWCIPCREGTDWLKKTL 365

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            R   G   K++ID +  ++ N+ GRT C LGDAAA P    ++ FR   E+ ++
Sbjct: 366 TRFHAGGGIKKDIDNIKYLADNMLGRTFCPLGDAAAMPTIAFVEKFRKEFEDHLE 420


>gi|163848445|ref|YP_001636489.1| NADH-quinone oxidoreductase subunit F [Chloroflexus aurantiacus
           J-10-fl]
 gi|163669734|gb|ABY36100.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus aurantiacus
           J-10-fl]
          Length = 446

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 186/388 (47%), Positives = 252/388 (64%), Gaps = 9/388 (2%)

Query: 26  RGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
            G W+     L EK    I+  VK SGLRGRGGAGF TG+KW F+PK     P YL+ N 
Sbjct: 38  HGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTGIKWGFLPK--GVYPRYLLCNC 95

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT  +  I+   PH LIEG  ++++AI A+ A+IY+RGEF     +L+ A+ + Y
Sbjct: 96  DESEPGTFNNHQIIDKNPHQLIEGVALSAYAIEANTAYIYMRGEFAAAARTLERAIAQAY 155

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            +G LG N    G+D+DI VH GAGAYICGEETAL+ESLEGK GQPRLKPPFPA  GLYG
Sbjct: 156 EAGFLGKNIFGTGFDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLKPPFPAVAGLYG 215

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT +NNVE++A VP I+ +G +WY   G E + GTK FS+SGHVN P   E    +   
Sbjct: 216 KPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCFSLSGHVNRPGNYELPFGVPLR 275

Query: 264 ELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
           ELIE  ++ GG++GG   +  +IPGG+S P L A  +    +DY+ +   GS LG+ AVI
Sbjct: 276 ELIESPEYGGGMKGG-RPVKIIIPGGASAPWLTADHLD-VPLDYESVAAAGSMLGSGAVI 333

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV-KGIAQKREIDLLYE 380
           V++ +       +++  F+KHESCG+CTPCREGT W++R + R+V +G A   +ID L+ 
Sbjct: 334 VLNDTVSAPHVAYKMDEFFKHESCGKCTPCREGTHWLVRTLHRMVEEGHATAADIDTLHS 393

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + + + G   C LG++A  PI+  ++ F
Sbjct: 394 IYRQMAGNCFCLLGESAVMPIKSALQLF 421


>gi|86359331|ref|YP_471223.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN
           42]
 gi|86283433|gb|ABC92496.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN
           42]
          Length = 420

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 195/412 (47%), Positives = 259/412 (62%), Gaps = 9/412 (2%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           G  LS   + G +  + K+L E   D ++  VK S LRGRGGAGF TGMKWSF+PK  S 
Sbjct: 15  GHLLSTYEAGGGYQALVKVLREYTPDEVVELVKRSNLRGRGGAGFLTGMKWSFVPKQ-SS 73

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +P YL  NADE EPGT KDR +M  +PH LIEG  ++++AIGA  A++Y+RGE++     
Sbjct: 74  KPKYLCCNADEGEPGTFKDRILMERDPHQLIEGLAVSAYAIGAKTAYVYIRGEYVTAIRR 133

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLESLEGKKGQPRLKP 193
           L+ A+ E +A G LGS   LG D +  VH   GAGAYICGEETA+LESLEG++ QPRLKP
Sbjct: 134 LEQAIAEAHAKGYLGSRI-LGSDFNFTVHIHCGAGAYICGEETAMLESLEGRRAQPRLKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY  PT +NNVE++A VP I+ RG+ W+   G E + G KL+ +SG V  P  
Sbjct: 193 PFPAVAGLYASPTVINNVETLACVPHIVVRGSDWFRDIGPEKSPGPKLYCVSGQVRKPGL 252

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  M I   EL++ H GG   G   + AVIPGG S P +P   +    MD+D L   GS
Sbjct: 253 YELPMGIPLRELVD-HAGGPPPG-RRIKAVIPGGVSAPVIPEHGLDVG-MDFDSLAAAGS 309

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W+++++ R+  G     
Sbjct: 310 MLGSAGVIVIDNSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKILRRIEAGDGAPG 369

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC   
Sbjct: 370 DLEQLDMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRCPLH 420


>gi|226365385|ref|YP_002783168.1| NADH-quinone oxidoreductase chain F [Rhodococcus opacus B4]
 gi|226243875|dbj|BAH54223.1| NADH-quinone oxidoreductase chain F [Rhodococcus opacus B4]
          Length = 432

 Score =  355 bits (912), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 198/382 (51%), Positives = 261/382 (68%), Gaps = 5/382 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I+ VK +GLRGRGGAGF TGMKWSF+P+   D+PHYLVVNADESE
Sbjct: 28  YEGLQKALRMEPDEVISTVKEAGLRGRGGAGFPTGMKWSFIPQ-GDDKPHYLVVNADESE 86

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH L+EG +IA++AI A  AFIYVRGE +     LQAAV E YA+G 
Sbjct: 87  PGTCKDMPLLLATPHALVEGVIIAAYAIRAGHAFIYVRGEVVPVLRRLQAAVAEAYAAGY 146

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY  PT 
Sbjct: 147 LGKDILGTGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYASPTV 206

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  EL+ 
Sbjct: 207 VNNVESIASVPPIIVNGIEWFRSMGSEKSPGFTLYSLSGHVTTPGQYEAPLGITLRELL- 265

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
            + GG+R G   L    PGGSS P      +  A +DY+G+   GS LGT A+ + D +T
Sbjct: 266 GYAGGVRAG-HRLKFWTPGGSSTPIFTDEHLDVA-LDYEGVGAAGSMLGTKALQIFDETT 323

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++ERL +G     ++  L +++ NI G
Sbjct: 324 CVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILERLERGEGTDADLQKLLDIADNILG 383

Query: 388 RTICALGDAAAWPIQGLIKNFR 409
           ++ CALGD AA PI   +K FR
Sbjct: 384 KSFCALGDGAASPIMSSVKYFR 405


>gi|330465207|ref|YP_004402950.1| NADH-quinone oxidoreductase subunit F [Verrucosispora maris
           AB-18-032]
 gi|328808178|gb|AEB42350.1| NADH-quinone oxidoreductase subunit F [Verrucosispora maris
           AB-18-032]
          Length = 438

 Score =  355 bits (911), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 190/395 (48%), Positives = 250/395 (63%), Gaps = 11/395 (2%)

Query: 22  DSMSRGHWDNVD------KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           D+   G ++ +D      K L+   D +I  VK SGLRGRGGAGF TG+KW F+P+    
Sbjct: 24  DAWQIGTYEKLDGYAALRKALKAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADE EPGTCKD  +M H+PH+L+EG +IAS+AI A+ A+IY+RGE +     
Sbjct: 83  KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ AV+E  A G LG N    G+D++++VH GAGAYICGEETALL+SLEG +GQPRL+PP
Sbjct: 143 LRNAVEEAKAKGYLGKNILGSGFDLELVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNV +IA VP I+  GA W+   G E + G  ++S+SG +  P   
Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKSMGTEKSAGPMIYSLSGRIANPGQY 262

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  ELIE   GG++ G  NL    PGGSS P L A  +    +D++G+   GS 
Sbjct: 263 ECGLGITLRELIEL-AGGMQPG-HNLRFWTPGGSSTPLLTAEHLD-VPLDFEGVAAAGSI 319

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A  +       + A +R   FY HESCG+CTPCREG  WM+RV  R++ G     +
Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHDD 379

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +D L +   NI GR+ C LGD A   +   +K F+
Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFK 414


>gi|238062216|ref|ZP_04606925.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. ATCC
           39149]
 gi|237884027|gb|EEP72855.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. ATCC
           39149]
          Length = 438

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 185/377 (49%), Positives = 242/377 (64%), Gaps = 5/377 (1%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K L+   D +I  +K SGLRGRGGAGF TG+KW F+P+    +PHYLVVNADE EPGTCK
Sbjct: 42  KALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDGKPHYLVVNADEGEPGTCK 100

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152
           D  +M H+PH+L+EG +I S+AI A  A+IY+RGE +     L+ AV E YA G LG + 
Sbjct: 101 DLPLMTHDPHSLVEGVIIGSYAIRASRAYIYIRGEAVHAARRLRNAVQEAYAKGYLGRDI 160

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
              G+D++++VH GAGAYICGEETALL+SLEG +GQPRL+PPFPA  GLY  PT VNNV 
Sbjct: 161 LGSGFDLELVVHSGAGAYICGEETALLDSLEGFRGQPRLRPPFPATHGLYASPTVVNNVG 220

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           +IA VP I+  GA W+   G E + G  ++S+SG V  P   E +M +T  EL+E   GG
Sbjct: 221 TIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRVANPGQYECTMGVTLRELLEL-AGG 279

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           ++ G  NL    PGGSS P L A  +    +D++G+   GS LGT A  +       + A
Sbjct: 280 MQPG-HNLRFWTPGGSSTPLLTAEHLD-VPLDFEGVAAAGSILGTTATQIFSDQDCPVYA 337

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
            +R   FY HESCG+CTPCREG  WM+RV  R++ G     ++D L +   NI GR+ C 
Sbjct: 338 TYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHEDLDTLLDTCDNILGRSFCG 397

Query: 393 LGDAAAWPIQGLIKNFR 409
           LGD A   +   +K F+
Sbjct: 398 LGDGATSSVTSSLKYFK 414


>gi|326772147|ref|ZP_08231432.1| NADH oxidoreductase (quinone), F subunit [Actinomyces viscosus
           C505]
 gi|326638280|gb|EGE39181.1| NADH oxidoreductase (quinone), F subunit [Actinomyces viscosus
           C505]
          Length = 443

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 204/416 (49%), Positives = 256/416 (61%), Gaps = 19/416 (4%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQ+R +T         L   +  G ++ + K      + +I  +K SGLRGRGGAGF 
Sbjct: 20  LWDQERSWT---------LQTYLDHGGYEGLKKAKTLSCEELIGLIKDSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+P V    P YLVVNADESEPGTCKD   +   P  LIEG  I S AIG   A
Sbjct: 71  TGLKWSFLPPV-DGGPRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD----VDIIVHHGAGAYICGEETA 177
           F+Y+RGE       L +AV E   SGLL  ++  G D    + I  H GAGAYICGEETA
Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLL--DTGFGLDGQQRLRITAHAGAGAYICGEETA 187

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+SLEG++G PRLKPPFPA  GLY  PT VNNVE+IA VP IL RGA WYS  G E ++
Sbjct: 188 LLDSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSK 247

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G  +FS+SGHV +P   E    IT  ELIE   GGIR G   L   +PGGSS P     +
Sbjct: 248 GHGIFSVSGHVAHPGQYEAPFGITMRELIEL-SGGIRPG-HELKFWVPGGSSTPIFGPDE 305

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ + E GS LGT A+ V D +  +++ + R + FY+HESCG+CTPCREGT W
Sbjct: 306 LD-VPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYW 364

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           M ++M RL  G     +++ L  ++ NI GR+ CALGDA+A P+   IK FR   E
Sbjct: 365 MRQIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFE 420


>gi|320532546|ref|ZP_08033355.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135240|gb|EFW27379.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 443

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/416 (48%), Positives = 257/416 (61%), Gaps = 19/416 (4%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQ+R +T         L   +  G ++ + +      + +I  +K SGLRGRGGAGF 
Sbjct: 20  LWDQERSWT---------LQAYLDHGGYEGLKQAKTLSSEDLITLIKDSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+P V    P YLVVNADESEPGTCKD   +   P  LIEG  I S AIG   A
Sbjct: 71  TGLKWSFLPPV-DGGPRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD----VDIIVHHGAGAYICGEETA 177
           F+Y+RGE       L +AV E   SGLL  ++  G D    + I  H GAGAYICGEETA
Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLL--DTGFGLDGQQPLRITAHAGAGAYICGEETA 187

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+SLEG++G PRLKPPFPA  GLY  PT VNNVE+IA VP IL RGA WYS  G E ++
Sbjct: 188 LLDSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPEILARGAQWYSTMGTEKSK 247

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G  +FS+SGHV +P   E    IT  ELIE   GGIR G + L   +PGGSS P     +
Sbjct: 248 GHGIFSVSGHVAHPGQYEAPFGITMRELIEL-SGGIRPGHE-LKFWVPGGSSTPIFGPDE 305

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ + E GS LGT A+ V D +  +++ + R + FY+HESCG+CTPCREGT W
Sbjct: 306 LD-VPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYW 364

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           M ++M RL  G     +++ L  ++ NI GR+ CALGDA+A P+   IK FR   E
Sbjct: 365 MRQIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFE 420


>gi|256425963|ref|YP_003126616.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM
           2588]
 gi|256040871|gb|ACU64415.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM
           2588]
          Length = 454

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/403 (49%), Positives = 263/403 (65%), Gaps = 16/403 (3%)

Query: 25  SRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + G + + +K L+    D +++EVK SGLRGRGGAGF TGMKWSF+ K     P YLV N
Sbjct: 23  ANGGYGSAEKALKSMSPDQVLDEVKKSGLRGRGGAGFPTGMKWSFIAKP-EGVPRYLVCN 81

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGT KDR +M   PH LIEG +I+S+ +G +  +IY+RGE+    + L+ A+ + 
Sbjct: 82  ADESEPGTFKDRYLMEFLPHLLIEGLLISSYTLGCNSCYIYIRGEYAWIPDILEEAIADA 141

Query: 144 YASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
             +G LG N +  G+D++I V  GAGAYICGEETAL+ESLEGK+G PR+KPPFPA  GL+
Sbjct: 142 KKNGWLGKNIQGTGFDLEIYVQRGAGAYICGEETALIESLEGKRGNPRIKPPFPAVKGLW 201

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
            CPT VNNVE++A V  ILR G   Y+ +G   + GTKL S  G++N P   E  M+I+ 
Sbjct: 202 DCPTVVNNVETLATVVPILRIGGEEYAKYGTGKSTGTKLISACGNINKPGVYEIEMNISV 261

Query: 263 DELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDGLKE---- 310
           +E I  +++CGGI  G   L A IPGGSSVP LPA  +         +M Y+ L +    
Sbjct: 262 EEFIYSDEYCGGIANG-KRLKACIPGGSSVPILPANLLLKTAKGEPRMMTYESLADGGFA 320

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            G+ LG+   IV+D    I+K     + FY HESCGQC+PCREGTGWM RV+  +  G  
Sbjct: 321 TGTMLGSGGFIVLDEDQCIVKNTLTFARFYHHESCGQCSPCREGTGWMKRVLLNIENGKG 380

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +  +IDLL+++ + IEG TIC LGDAAAWP+   I++FR   E
Sbjct: 381 KMSDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFE 423


>gi|325067542|ref|ZP_08126215.1| NADH-quinone oxidoreductase, F subunit [Actinomyces oris K20]
          Length = 443

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 204/416 (49%), Positives = 258/416 (62%), Gaps = 19/416 (4%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQ+R +T         L   +  G ++ + K      + +I+ +K SGLRGRGGAGF 
Sbjct: 20  LWDQERSWT---------LQAYLDHGGYEGLKKAKTLSCEDLISLIKDSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+P V    P YLVVNADESEPGTCKD   +   P  LIEG  I S AIG   A
Sbjct: 71  TGLKWSFLPPV-DGGPRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD----VDIIVHHGAGAYICGEETA 177
           F+Y+RGE       L +AV E   SGLL  ++  G D    + I  H GAGAYICGEETA
Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLL--DTGFGLDGQQRLRITAHAGAGAYICGEETA 187

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+SLEG++G PRLKPPFPA  GLY  PT VNNVE+IA VP IL RGA WYS  G E ++
Sbjct: 188 LLDSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSK 247

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G  +FS+SGHV +P   E    IT  ELIE   GGIR G + L   +PGGSS P     +
Sbjct: 248 GHGIFSVSGHVAHPGQYEAPFGITMRELIEL-SGGIRPGHE-LKFWVPGGSSTPIFGPDE 305

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ + E GS LGT A+ V D +  +++ + R + FY+HESCG+CTPCREGT W
Sbjct: 306 LD-VPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYW 364

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           M ++M RL  G     +++ L  ++ NI GR+ CALGDA+A P+   IK FR   E
Sbjct: 365 MRQIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFE 420


>gi|189218230|ref|YP_001938872.1| NADH-ubiquinone oxidoreductase chain F [Methylacidiphilum
           infernorum V4]
 gi|189185088|gb|ACD82273.1| NADH-ubiquinone oxidoreductase chain F [Methylacidiphilum
           infernorum V4]
          Length = 458

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 187/417 (44%), Positives = 260/417 (62%), Gaps = 23/417 (5%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           +  G +  + K L     +I+ EVK SGLRGRGGAGF TG+KW F+    + +P YL+ N
Sbjct: 27  LQHGGYQVLKKALSLDPFFIVQEVKKSGLRGRGGAGFPTGVKWGFINHEKNTKPVYLLCN 86

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGT KDR I+  +PH LIEG +I+++A  AH  +IY+RGEF R  E L+ A+ E 
Sbjct: 87  ADESEPGTFKDRQIIYKDPHQLIEGMIISAYANRAHLGYIYIRGEFARGAEILEKALSEA 146

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FPANVGL 201
                LG N    GYD++I V  GAGAYICGEET L+ESLEGK+  PR+KPP FPA +GL
Sbjct: 147 RERNFLGKNILGSGYDLEIYVFRGAGAYICGEETGLIESLEGKRAYPRIKPPYFPAVLGL 206

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SI 260
           Y CPT VNNVE++  V  I+  G   ++  G  NN GT+++ +SG VN P   E    +I
Sbjct: 207 YMCPTIVNNVETLCHVKHIVDMGGEAFAQIGTPNNTGTRIWCVSGDVNKPGYYEYPCGAI 266

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-------------------MRGA 301
           TF EL+ + CGGIR G + L AVIPGGSS   L A +                   +   
Sbjct: 267 TFGELLYEVCGGIRNG-NKLKAVIPGGSSAKVLRADKKYKIPKKKSDGTTEMVEVGLEDI 325

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+D +   GS  G+  +IVMD + D+++ +  ++ FY HESCGQCTPCREG+ WM ++
Sbjct: 326 PLDFDTVAATGSMSGSGGIIVMDDTRDMVECLRNIAEFYAHESCGQCTPCREGSLWMKKI 385

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++R+ +G  +K +  LL +V+ +I GRTICA G+A +WP+Q  ++ F      ++ +
Sbjct: 386 LDRICRGKGRKEDSQLLLDVANHIAGRTICAFGEACSWPVQSFVEMFEEEFTAKVKE 442


>gi|329944207|ref|ZP_08292466.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328530937|gb|EGF57793.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 443

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 204/416 (49%), Positives = 255/416 (61%), Gaps = 19/416 (4%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQ+R +T         L   +  G ++ + K      + +I  +K SGLRGRGGAGF 
Sbjct: 20  LWDQERSWT---------LQAYLDHGGYEGLKKAKTLSSEDLITLIKDSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+P V    P YLVVNADESEPGTCKD   +   P  LIEG  I S AIG   A
Sbjct: 71  TGLKWSFLPPV-DGGPRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD----VDIIVHHGAGAYICGEETA 177
           F+Y+RGE       L  AV E   SGLL  ++  G D    + I  H GAGAYICGEETA
Sbjct: 130 FVYLRGEVPHVYRRLLGAVREATESGLL--DTGFGLDGQQRLRITAHAGAGAYICGEETA 187

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+SLEG++G PRLKPPFPA  GLY  PT VNNVE+IA VP IL RGA WYS  G E ++
Sbjct: 188 LLDSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSK 247

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G  +FS+SGHV  P   E    IT  ELIE   GGIR G + L   +PGGSS P     +
Sbjct: 248 GHGIFSVSGHVARPGQYEAPFGITMRELIEL-SGGIRPGHE-LKFWVPGGSSTPIFGPDE 305

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ + E GS LGT A+ V D +  +++ + R + FY+HESCG+CTPCREGT W
Sbjct: 306 LD-VPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYW 364

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           M ++M RL  G     +++ L  ++ NI GR+ CALGDA+A P+   IK FR   E
Sbjct: 365 MRQIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFE 420


>gi|291298803|ref|YP_003510081.1| NADH-quinone oxidoreductase F subunit [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568023|gb|ADD40988.1| NADH-quinone oxidoreductase, F subunit [Stackebrandtia nassauensis
           DSM 44728]
          Length = 438

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 185/389 (47%), Positives = 246/389 (63%), Gaps = 5/389 (1%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K  +   D +I  +K SG RGRGGAGF  GMKW+F+P+    +PHYLVVNADE EPGTCK
Sbjct: 42  KAFKYTPDDLIAFMKESGHRGRGGAGFPVGMKWAFIPQ-NDGKPHYLVVNADEGEPGTCK 100

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152
           D  +M ++PH+LIEG +IA +A+ A  AFIY+RGE +     L+ AV+E  A+G LG N 
Sbjct: 101 DLPLMMNDPHSLIEGIIIACYAVRASRAFIYIRGEAVHAARRLRHAVEEAKAAGYLGDNI 160

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
              G D++I+VH GAGAYICGEETALL+SLEG +GQPRL+PPFPA  GLY  PT +NNV 
Sbjct: 161 LDSGLDLEIVVHSGAGAYICGEETALLDSLEGFRGQPRLRPPFPATHGLYASPTVINNVG 220

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           SIA VP I+  GA W+   G EN  GT ++S+SG V  P   E  +  T DEL+E   G 
Sbjct: 221 SIASVPHIVLGGAEWWKSLGSENAAGTMIYSLSGRVANPGQYECRLGTTLDELLELAGGM 280

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
            +G   NL    PGGSS P L A +     +D+D + + GS LGT A+++   +   +  
Sbjct: 281 AKG--HNLKFWTPGGSSTPML-AAKHSDVPLDFDNIAKAGSILGTTAMMIYSDADCPVYC 337

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
            +R   FY HESCG+CTPCREG  WM R+  R++ G     ++D L +   N+ GR+ C 
Sbjct: 338 TYRWLQFYAHESCGKCTPCREGNYWMTRIYRRILSGNGTHEDLDTLLDACDNLLGRSFCG 397

Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           LGD A  P+   +K+F+    + I+ + R
Sbjct: 398 LGDGATSPVTSSLKHFKQDYIDYIEGHRR 426


>gi|229490823|ref|ZP_04384658.1| NADH oxidoreductase, f subunit [Rhodococcus erythropolis SK121]
 gi|229322213|gb|EEN87999.1| NADH oxidoreductase, f subunit [Rhodococcus erythropolis SK121]
          Length = 439

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 204/415 (49%), Positives = 268/415 (64%), Gaps = 14/415 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77
           +L   +    +  + K L    D +I  VK +GLRGRGGAGF TG+KWSF+P+   D+P 
Sbjct: 18  TLDSYLRHDGYQALRKALAMSPDAVIETVKDAGLRGRGGAGFPTGLKWSFIPQSTEDKPG 77

Query: 78  ----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
               HYLVVNADESEPGTCKD  +M   PHTL+EG +IA++AI A  AFIYVRGE +   
Sbjct: 78  DGKPHYLVVNADESEPGTCKDMPLMMATPHTLVEGVIIAAYAIRAAKAFIYVRGEVVPVL 137

Query: 134 ESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             LQ AV E YA+G LG S    G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+
Sbjct: 138 RRLQTAVAEAYAAGYLGRSILGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQPRLR 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GLY CPT VNNVESIA VP+I+  G  W+   G E + G  L+S+SGHV  P 
Sbjct: 198 PPFPAVAGLYACPTVVNNVESIASVPSIVLGGPEWFRSMGSEKSPGFTLYSLSGHVTTPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  + IT  EL++ + GG+R G   L    PGGSS P     +     +DY+G+   G
Sbjct: 258 QYEAPLGITLRELLD-YAGGVRTG-HTLKFWTPGGSSTPIF-TDEHLDVPLDYEGVGAAG 314

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT A+ + D +T I++A+ R + FY HESCG+CTPCREGT W+++++ RL  G   +
Sbjct: 315 SMLGTKALQIFDDTTCIVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILRRLEGGTGTE 374

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY--HRCNFQ 425
            ++  L ++S  I G++ CALGD A  PI   +K FR   EE +  +  + C F 
Sbjct: 375 ADLTKLLDISDTILGKSFCALGDGATSPIMSSLKYFR---EEYVAHFDGNGCPFD 426


>gi|297570901|ref|YP_003696675.1| NADH-quinone oxidoreductase, F subunit [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931248|gb|ADH92056.1| NADH-quinone oxidoreductase, F subunit [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 441

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 201/415 (48%), Positives = 259/415 (62%), Gaps = 15/415 (3%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           D +R +T L G +      +++R  WD     + + +  + N +K SGLRGRGGAGF TG
Sbjct: 19  DTERPWT-LDGYRATGGYQAIARA-WD-----INQEKGALTNLIKESGLRGRGGAGFPTG 71

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSF+P      P YLVVNADESEPGTCKD   +   PH LIEG  I   AIG H  FI
Sbjct: 72  LKWSFLPPE-DGGPRYLVVNADESEPGTCKDIPFLMANPHLLIEGMAICLMAIGGHDGFI 130

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLES 181
           Y+RGE +     L AAV E   +G++G+       YD++I VH GAGAYICGEETALL+S
Sbjct: 131 YLRGEVVHVYRRLLAAVREAKEAGIIGTGCGPNGDYDINITVHAGAGAYICGEETALLDS 190

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS--GFGRENNRGT 239
           LEG +GQPRLKPPFPA  GLY  PT VNNVESIA VP I+  GA W++  G G +N+ G 
Sbjct: 191 LEGFRGQPRLKPPFPAVAGLYARPTVVNNVESIASVPGIINNGAEWFTAMGAGTKNSPGH 250

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
            +FS+SGHV  P   E    IT  EL++   GGIR G +     I GGSS P      + 
Sbjct: 251 GIFSLSGHVKNPGQFEAPFGITMRELLDM-AGGIREGHELKFFAI-GGSSAPLFTPEHLD 308

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              + Y+ + + GS L T A+ + D +  +++ + R + FY+HESCG+CTPCREGT WM 
Sbjct: 309 -VPLGYEEVAQAGSMLATRAIQIFDETVSVVRVVSRWTDFYQHESCGKCTPCREGTFWMR 367

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           ++M R   G   + +IDLLY+V+ NI GR+ CALGDAAA PI+  I  FR   E+
Sbjct: 368 QIMHRFEAGQGTEADIDLLYDVASNIAGRSFCALGDAAATPIRSAIDLFRSEFED 422


>gi|295837120|ref|ZP_06824053.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB74]
 gi|197697230|gb|EDY44163.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB74]
          Length = 461

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 197/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 50  YEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 108

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH LIEG VIA +AI +  AFIY+RGE +     L  AV E YA+G 
Sbjct: 109 PGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGY 168

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G DV++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 169 LGENILGSGTDVELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 228

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 229 VNNVESIASVPAILNRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 288

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 289 L-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 345

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  ++D L +++ NI G
Sbjct: 346 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRADDLDKLLDIADNING 405

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ CALGD AA PI   +K FR   E  +D
Sbjct: 406 KSFCALGDGAASPIASSLKYFREEYEAHLD 435


>gi|318057838|ref|ZP_07976561.1| putative NADH dehydrogenase chain F [Streptomyces sp. SA3_actG]
 gi|318078936|ref|ZP_07986268.1| putative NADH dehydrogenase chain F [Streptomyces sp. SA3_actF]
          Length = 463

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 196/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 52  YEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 110

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH LIEG VIA +AI +  AFIY+RGE +     L  AV E YA+G 
Sbjct: 111 PGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGY 170

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 171 LGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 230

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 231 VNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 290

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 291 L-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 347

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  ++D L +++ NI G
Sbjct: 348 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRADDLDKLLDIADNING 407

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ CALGD AA PI   +K FR   E  +D
Sbjct: 408 KSFCALGDGAASPIASSLKYFREEYEAHLD 437


>gi|302521199|ref|ZP_07273541.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB78]
 gi|302430094|gb|EFL01910.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB78]
          Length = 461

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 196/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 50  YEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 108

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH LIEG VIA +AI +  AFIY+RGE +     L  AV E YA+G 
Sbjct: 109 PGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGY 168

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 169 LGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 228

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 229 VNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 288

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 289 L-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 345

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  ++D L +++ NI G
Sbjct: 346 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRADDLDKLLDIADNING 405

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ CALGD AA PI   +K FR   E  +D
Sbjct: 406 KSFCALGDGAASPIASSLKYFREEYEAHLD 435


>gi|333025114|ref|ZP_08453178.1| putative NADH dehydrogenase chain F [Streptomyces sp. Tu6071]
 gi|332744966|gb|EGJ75407.1| putative NADH dehydrogenase chain F [Streptomyces sp. Tu6071]
          Length = 463

 Score =  352 bits (903), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 196/390 (50%), Positives = 255/390 (65%), Gaps = 5/390 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 52  YEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 110

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH LIEG VIA +AI +  AFIY+RGE +     L  AV E YA+G 
Sbjct: 111 PGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGY 170

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 171 LGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVEGLYACPTV 230

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 231 VNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 290

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P      +    +DY+G+   GS LGT A+   D +T
Sbjct: 291 L-SGGMRPG-HRLKFWTPGGSSTPMFTEEHLD-VPLDYEGVGAAGSMLGTKALQCFDETT 347

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  ++D L +++ NI G
Sbjct: 348 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRADDLDKLLDIADNING 407

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ CALGD AA PI   +K FR   E  +D
Sbjct: 408 KSFCALGDGAASPIASSLKYFREEYEAHLD 437


>gi|297192783|ref|ZP_06910181.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151494|gb|EFH31198.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 456

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/391 (49%), Positives = 255/391 (65%), Gaps = 5/391 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 48  YEGLRKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 106

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L  AV E Y +G 
Sbjct: 107 PGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYEAGF 166

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CPT 
Sbjct: 167 LGKNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTV 226

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E  + IT  +L++
Sbjct: 227 VNNVESIASVPAILHKGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYEAPLGITLRQLLD 286

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+R G   L    PGGSS P     +     +DY+G+   GS LGT A+   D +T
Sbjct: 287 M-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAGSMLGTKALQCFDETT 343

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++D L +++ NI G
Sbjct: 344 CVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGNGVMSDLDKLNDIADNING 403

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++ CALGD AA PI   +K FR   E+ I Q
Sbjct: 404 KSFCALGDGAASPIFSSLKYFREEYEQHITQ 434


>gi|227497899|ref|ZP_03928079.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
 gi|226832691|gb|EEH65074.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
          Length = 452

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/399 (48%), Positives = 251/399 (62%), Gaps = 10/399 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L    + G ++ + K      + ++N VK+S LRGRGGAGF TG+KWSF+P     +P 
Sbjct: 37  TLEAYRANGGYEGLAKAKTMSAEELVNYVKSSNLRGRGGAGFPTGLKWSFLP-APDGKPR 95

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADESEPGTCKD   +   P  LIEG  I   AIG   AF+Y+RGE       L  
Sbjct: 96  YLVVNADESEPGTCKDIPTIMANPQALIEGIAITCRAIGGDHAFVYLRGEVTHVYRRLLH 155

Query: 139 AVDECYASGLLGSNSKLGYD----VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           AV E   SGLL  ++  G D    + I  H GAGAYICGEETALL+SLEG++G PRLKPP
Sbjct: 156 AVREATGSGLL--DTGFGLDGNQPLRITAHAGAGAYICGEETALLDSLEGRRGHPRLKPP 213

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVE+IA VP IL RGA WY+  G E ++G  +FS+SGHV +P   
Sbjct: 214 FPAVAGLYARPTVVNNVETIASVPGILARGADWYNAMGTERSKGHGIFSVSGHVKHPGQF 273

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E    IT  +LIE   GG+R G + L   +PGGSSVP     ++    +DY+ +   GS 
Sbjct: 274 EAPFGITMRQLIEM-AGGVREGHE-LKFWVPGGSSVPIFGPEELD-VPLDYESVGAAGSM 330

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ V D +  +++ + R + FY+HESCG+CTPCREGT WM ++M RL  G     +
Sbjct: 331 LGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMRQIMLRLEAGQGLPGD 390

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           ++ L +++ NI GR+ CALGDAAA P++  I  FR   E
Sbjct: 391 VEKLEDIAGNIAGRSFCALGDAAATPVRSGIARFRSEFE 429


>gi|239980147|ref|ZP_04702671.1| NADH dehydrogenase I chain F [Streptomyces albus J1074]
 gi|291452002|ref|ZP_06591392.1| NADH dehydrogenase subunit I F [Streptomyces albus J1074]
 gi|291354951|gb|EFE81853.1| NADH dehydrogenase subunit I F [Streptomyces albus J1074]
          Length = 449

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 198/404 (49%), Positives = 262/404 (64%), Gaps = 7/404 (1%)

Query: 16  QGKSLSDSMSRGH--WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           Q +S +    R H  ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+  
Sbjct: 26  QPESWTLETYRRHDGYEGLRKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-G 84

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
             +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +   
Sbjct: 85  DGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVL 144

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             L  AV E Y +G LG +    G D+D+ VH GAGAYICGEETALL+SLEG++GQPRL+
Sbjct: 145 RRLHEAVREAYEAGYLGKDVLGSGLDLDLTVHAGAGAYICGEETALLDSLEGRRGQPRLR 204

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GLY CPT VNNVESIA VP IL++G  W+   G E + G  L+S+SGHV  P 
Sbjct: 205 PPFPAVAGLYACPTVVNNVESIASVPAILQQGKEWFRSMGSEKSPGFTLYSLSGHVAGPG 264

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  + IT  +L++   GG+R G   L    PGGSS P     +     +DY+G+   G
Sbjct: 265 QYEAPLGITLRQLLDM-SGGMRPG-HRLKFWTPGGSSTPMF-TDEHLDVPLDYEGVGAAG 321

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  + 
Sbjct: 322 SMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGQGKM 381

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++D L +++ NI G++ CALGD AA PI   +K FR   E+ I
Sbjct: 382 SDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRDEYEQHI 425


>gi|300775177|ref|ZP_07085039.1| NADH dehydrogenase (quinone) [Chryseobacterium gleum ATCC 35910]
 gi|300505917|gb|EFK37053.1| NADH dehydrogenase (quinone) [Chryseobacterium gleum ATCC 35910]
          Length = 452

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 200/401 (49%), Positives = 268/401 (66%), Gaps = 15/401 (3%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           +G +   +K L+   D I+ EVKASGLRGRGGAGF TGMKWSF+ K     P +LVVNAD
Sbjct: 24  QGGYTAAEKALKMTPDEILEEVKASGLRGRGGAGFPTGMKWSFLAKP-EGVPRHLVVNAD 82

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGT KDR +M   PH LIEG +I+S+ +G++ ++IY+RGE+    + L+ A++E  A
Sbjct: 83  ESEPGTFKDRYLMEFLPHLLIEGMLISSYCLGSNTSYIYIRGEYSWIPDILEEAIEEAKA 142

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG N    G+D++I V  G GAYICGEETALLESLEGK+G PRLKPPFPA  GL+  
Sbjct: 143 AGFLGKNILGTGFDLEIYVQRGGGAYICGEETALLESLEGKRGNPRLKPPFPAVKGLWER 202

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT VNNVESIA V  I+    + Y+  G   + GTKL S  G++N P   E  M+IT +E
Sbjct: 203 PTVVNNVESIAAVVPIIDITGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMTITVEE 262

Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLKE----MG 312
            I  +++CGGI+ G   L A IPGGSSVP +PA  +   +      M+Y+ L +     G
Sbjct: 263 FIYSDEYCGGIKDG-KRLKACIPGGSSVPIVPANLLLRTVNGEPRYMNYESLADGGFATG 321

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           + +G+   IV+D    I++    L+ FY HESCGQCTPCREGTGWM ++++++ KG  + 
Sbjct: 322 TMMGSGGFIVLDEDQCIVEHTMTLARFYNHESCGQCTPCREGTGWMYKILKKIEKGEGKM 381

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
            +IDLL+++ + IEG TIC LGDAAAWP+   I++FR   E
Sbjct: 382 EDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFE 422


>gi|284042620|ref|YP_003392960.1| NADH dehydrogenase (quinone) [Conexibacter woesei DSM 14684]
 gi|283946841|gb|ADB49585.1| NADH dehydrogenase (quinone) [Conexibacter woesei DSM 14684]
          Length = 436

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 181/396 (45%), Positives = 255/396 (64%), Gaps = 7/396 (1%)

Query: 25  SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           +RG + +++K L    + ++  +  SGLRGRGGAGF+ G K SF+P+   D+  YLV NA
Sbjct: 23  ARGGYQSLEKALRMTPEEVLQNLLDSGLRGRGGAGFAMGKKVSFLPRGSMDK--YLVCNA 80

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGT KDR++M+  PH LIEG +IA++A GA+ +FIY+RGE+  +   L+AA+ E  
Sbjct: 81  DESEPGTFKDRELMQKSPHMLIEGMIIAAYAAGANRSFIYIRGEYELQAMKLEAALHEAR 140

Query: 145 ASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
            +G LG N  LG D    +I+H GAGAYICGEET LL+SLEGK+G PRLKPPFPAN GLY
Sbjct: 141 EAGYLGENI-LGSDHSQSLILHRGAGAYICGEETGLLDSLEGKRGNPRLKPPFPANQGLY 199

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
             PT +NNVE++A VP I++     Y+  G EN+ GTKL SISG+V  P   E  + +  
Sbjct: 200 QGPTLINNVETLATVPHIIKMTGVEYAKLGVENSAGTKLISISGNVQRPGNYEIELGMKS 259

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            +++    GG   G   +    PGGSS P L    +     D+D + + GS LG+ A+IV
Sbjct: 260 YDIVYGLAGGPEPGR-RVKFWFPGGSSSPVLKPEDLD-LPYDFDSMAKAGSMLGSGAIIV 317

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           +D S  ++    +L+ FY+HESCG+CTPCREGT W ++++ER+ KG     ++D++  V 
Sbjct: 318 VDDSVPVMDVALKLAKFYRHESCGKCTPCREGTNWTVKMLERIDKGEGTPMDLDIIASVQ 377

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             I G  +C LGDA A P+  ++  FR   EE +++
Sbjct: 378 DQIMGNCLCVLGDAMAMPLSSMVAKFRDEFEEYMEE 413


>gi|284106850|ref|ZP_06386293.1| NADH dehydrogenase I subunit F [Candidatus Poribacteria sp. WGA-A3]
 gi|283830029|gb|EFC34305.1| NADH dehydrogenase I subunit F [Candidatus Poribacteria sp. WGA-A3]
          Length = 446

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 266/423 (62%), Gaps = 9/423 (2%)

Query: 1   MLTDQDRIFTNLY--GLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGG 57
           M T +  + TN+   G  G SLSD    G +  +  +L     + +I  VK SGLRGRGG
Sbjct: 1   MKTFEKILLTNMERPGYTG-SLSDYEGTGGYKALKTVLGNVPPNDLIEMVKKSGLRGRGG 59

Query: 58  AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           AGF TG+KW F+PK     P YL  NADESEPGT KDR +M  +PH ++EG  I+ +AIG
Sbjct: 60  AGFPTGVKWGFIPKDHPG-PRYLCCNADESEPGTFKDRQLMERDPHQILEGIAISCYAIG 118

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176
           A  A+IY+RGEF    + L+ A+ E Y +G LGS+    G  V + VH GAGAYICGEET
Sbjct: 119 AQTAYIYIRGEFRLAAKILERAITEAYQAGHLGSDIYGSGITVHVYVHVGAGAYICGEET 178

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-EN 235
           ALLESLEGK+G+PR KPPFPA  GLY  PT VNNVE++A VP I+ RGA W++  G    
Sbjct: 179 ALLESLEGKRGKPRTKPPFPATHGLYQKPTVVNNVETLANVPHIVNRGADWFASIGAPPK 238

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           + GT++F +SGHV  P   E  ++ TF +LI +  GG+R     L A IPGG+S P L  
Sbjct: 239 STGTRVFCLSGHVKRPGNYELPVNATFRDLIYELGGGMRSD-KPLKAFIPGGASAPFLTP 297

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +    +D++ +   GS  G+  + VM+  T ++ A  RL  F+ HESCG+CTPCREG+
Sbjct: 298 DHVD-VQLDFESVALAGSMSGSGGITVMEEGTSMVWAALRLMEFFYHESCGKCTPCREGS 356

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            W++++++R++    +  ++  L E+ +NI GRT+CA GDA   P+Q  +K +R   E  
Sbjct: 357 SWIVQILQRIMNKQGRPDDLRTLTEICENIGGRTVCAFGDAEIAPVQSTLKYWRNEYEAL 416

Query: 416 IDQ 418
           I++
Sbjct: 417 IEE 419


>gi|307328626|ref|ZP_07607799.1| NADH-quinone oxidoreductase, F subunit [Streptomyces violaceusniger
           Tu 4113]
 gi|306885738|gb|EFN16751.1| NADH-quinone oxidoreductase, F subunit [Streptomyces violaceusniger
           Tu 4113]
          Length = 460

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 199/396 (50%), Positives = 257/396 (64%), Gaps = 12/396 (3%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    +PHYLVVNADESE
Sbjct: 41  YEGMRKALAMDPDAVIALVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESE 99

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGTCKD  ++   PH+LIEG VIA  AI +  AFIY+RGE +     L  AV E Y +G 
Sbjct: 100 PGTCKDIPLLYANPHSLIEGMVIACHAIRSEHAFIYLRGETVPVLRRLHEAVREAYEAGY 159

Query: 149 LGS----NSKLGYD----VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
           LG+      KLG D    +DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  G
Sbjct: 160 LGTAERRRDKLGVDGLPGLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAG 219

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           LY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E  + I
Sbjct: 220 LYACPTVVNNVESIASVPAILNKGKEWFRSMGSEKSPGFTLYSLSGHVANPGQFEGPLGI 279

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
           T  +L++   GG+R G   L    PGGSS P L    +    +DY+G+   GS LGT A+
Sbjct: 280 TLRQLLDM-SGGMRPG-HRLKFWTPGGSSTPLLTEEHL-DVPLDYEGVGAAGSMLGTKAL 336

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
              D +T +++A+ R + FY HESCG+CTPCREGT W+++++  L  G  +  ++D L +
Sbjct: 337 QCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDLEAGKGRMDDLDKLAD 396

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ NI G++ CALGD AA PI   +K FR   E+ I
Sbjct: 397 IADNINGKSFCALGDGAASPIFSSLKYFREEYEQHI 432


>gi|223937081|ref|ZP_03628989.1| NADH dehydrogenase (quinone) [bacterium Ellin514]
 gi|223894362|gb|EEF60815.1| NADH dehydrogenase (quinone) [bacterium Ellin514]
          Length = 478

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 195/418 (46%), Positives = 251/418 (60%), Gaps = 36/418 (8%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +Q KSL D  S             G + I  +VK SGLRGRGGAGFS G+KWSF+ +  S
Sbjct: 39  IQPKSLPDGKSM-----------SGPEQIREDVKVSGLRGRGGAGFSCGLKWSFVDRK-S 86

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +P YL+ NADESEPGT KDR I+  +PH +IEG +I+ FA     A+IY+RGEF     
Sbjct: 87  GKPIYLICNADESEPGTFKDRQILHKDPHQMIEGMIISCFANDVKLAYIYIRGEFPDGAR 146

Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  A+ E  A   LG N    GYD++I VH GAGAYICGEET L+ESLEGK+  PR+KP
Sbjct: 147 ILNKALKEARAKNFLGKNILGSGYDLEIHVHRGAGAYICGEETGLIESLEGKRAYPRIKP 206

Query: 194 P-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           P FPA +GLY CPT VNNVE++  V  ++  G S Y+  G  NN GT++ SISG V  P 
Sbjct: 207 PYFPAILGLYMCPTIVNNVETLCQVKHVVAMGGSEYAKIGTPNNTGTRIVSISGQVKKPG 266

Query: 253 TVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ-------------- 297
             E E    T  +LI +  GG+  G   L A+IPGGSS     AG+              
Sbjct: 267 YYEIEVGKATIGQLINEFAGGLHDGR-KLKAIIPGGSSAKVFKAGEKFKLKKKGPDGKDI 325

Query: 298 -----MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
                M     D+D L   GS  G+ A+IVMD S DI++A+  LS FY HESCGQCTPCR
Sbjct: 326 EQEVDMLDLPYDFDSLMAAGSMSGSGAIIVMDDSVDIVEALANLSEFYAHESCGQCTPCR 385

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFR 409
           EG+ WM + + R+  G  +K++ + L +++ NI  GRTICA G+A +WP+Q  +  F+
Sbjct: 386 EGSLWMSKALHRMTHGEGRKQDAEYLLKIADNIPGGRTICAFGEACSWPVQSFVGKFK 443


>gi|195119866|ref|XP_002004450.1| GI19938 [Drosophila mojavensis]
 gi|193909518|gb|EDW08385.1| GI19938 [Drosophila mojavensis]
          Length = 470

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/419 (44%), Positives = 246/419 (58%), Gaps = 22/419 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NLYG     L  +  RG W     +++ G DWI+ E               
Sbjct: 71  LVDCDRIFQNLYGRHDWRLQGARKRGDWHRTADLIKMGPDWIMGE--------------- 115

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
               W ++ KV   +   L+VN  E EPGTCKDR+I+RHEPH +IEGC++A  A+G    
Sbjct: 116 ----WEYLRKV-QAKGKVLIVNCAEGEPGTCKDREILRHEPHKIIEGCLLAGCAMGCERC 170

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            +YVR  F  E  +LQ A+ E Y  GL+G NS + G  +DIIV  G   Y+ GEETAL+ 
Sbjct: 171 IVYVRNRFYNEACNLQLALAEAYCCGLIGCNSCETGVKLDIIVQRG-DRYLTGEETALVN 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK  +PR +PPF    G +  P  V N E++AV+PT+LRRGA W++  G + N GTK
Sbjct: 230 CLMGKLARPRRRPPFLHEQGYFDHPCVVVNTETLAVLPTMLRRGAVWFTSLGSDKNFGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PCTVEE MS+    +IE+H GG+ GGWDNLLA+ PGG S P + A     
Sbjct: 290 LFCISGHVVNPCTVEEEMSMPLRNIIERHAGGVCGGWDNLLALWPGGLSTPLMGAACAGQ 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L   GS LGTAA+IV+ +  D +  +     F+  ++C QCTPCR+G  W+  
Sbjct: 350 VLMDFDHLSAAGSELGTAAIIVISKDCDPLLVMQHSIEFFMDQTCKQCTPCRDGAIWLPE 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +    VKG A  + I+ +  + K +E  TIC L D+ A     LI++FRPLIE RI +Y
Sbjct: 410 LFSNFVKGEAVPQMIEFVDIIRKKMENSTICGLCDSQANLAGSLIQHFRPLIEARILEY 468


>gi|302543439|ref|ZP_07295781.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461057|gb|EFL24150.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 459

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 198/391 (50%), Positives = 254/391 (64%), Gaps = 12/391 (3%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    +PHYLVVNADESEPGTCK
Sbjct: 46  KALAMDPDAVIALVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESEPGTCK 104

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS-- 151
           D  ++   PH LIEG VIA  AI +  AFIY+RGE +     L  AV E Y +G LG+  
Sbjct: 105 DIPLLYANPHALIEGMVIACHAIRSEHAFIYLRGETVPVLRRLHEAVREAYEAGYLGTAE 164

Query: 152 --NSKLGYD----VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
               KLG D    +DI VH GAGAYICGEETALL+SLEG++GQPRL+PPFPA  GLY CP
Sbjct: 165 RRREKLGVDGLPGLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACP 224

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T VNNVESIA VP+IL +G  W+   G E + G  L+S+SGHV  P   E  + IT  +L
Sbjct: 225 TVVNNVESIASVPSILNKGKEWFRSMGSEKSPGFTLYSLSGHVANPGQFEGPLGITLRQL 284

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           ++   GG+R G   L    PGGSS P L    +    +DY+G+   GS LGT A+   D 
Sbjct: 285 LDM-SGGMRPG-HRLKFWTPGGSSTPLLTEEHL-DVPLDYEGVGAAGSMLGTKALQCFDE 341

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  ++D L +++ NI
Sbjct: 342 TTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDVEAGKGRMADLDKLADIADNI 401

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            G++ CALGD AA PI   +K FR   E+ I
Sbjct: 402 NGKSFCALGDGAASPIFSSLKYFRAEYEQHI 432


>gi|218461918|ref|ZP_03502009.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli Kim
           5]
          Length = 366

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/371 (49%), Positives = 239/371 (64%), Gaps = 7/371 (1%)

Query: 57  GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           GAGF TGMKW F+PK  + +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AI
Sbjct: 1   GAGFPTGMKWGFVPKR-TGKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAI 59

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH-H-GAGAYICGE 174
           GA  A++Y+RGE++     L+ A+ E +A G LG    LG D +  VH H GAGAYICGE
Sbjct: 60  GAETAYVYIRGEYVTAIRRLEQAIAEAHAKGYLGKRI-LGSDFNFAVHIHCGAGAYICGE 118

Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234
           ETA+LESLEGK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RGA W+ G G +
Sbjct: 119 ETAMLESLEGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPD 178

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
            + G KL+ +SG V+ P   E  M I   EL+E H GG+  G   + AVIPGG S P +P
Sbjct: 179 KSPGPKLYCLSGQVHKPGLYELPMGIPLRELVENHAGGVLPG-RRIKAVIPGGVSAPVIP 237

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
              +    MD+D L   GS LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG
Sbjct: 238 EHGLE-VRMDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREG 296

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
             W ++V+ R+  G     +++ L  + K I G T CALGD AA  ++  + +FR     
Sbjct: 297 LNWTVKVLRRIETGEGAAGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFVA 356

Query: 415 RIDQYHRCNFQ 425
            I++ HRC F 
Sbjct: 357 HIEE-HRCPFH 366


>gi|150026258|ref|YP_001297084.1| NADH dehydrogenase I, F subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772799|emb|CAL44283.1| NADH dehydrogenase I, F subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 455

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/404 (48%), Positives = 260/404 (64%), Gaps = 16/404 (3%)

Query: 27  GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           G + +V+K L+    D ++ EVK SG+RGRGGAGF  GMKWSF+ K  S +P +LV NAD
Sbjct: 25  GGYASVEKALKTLTPDEVVEEVKTSGIRGRGGAGFPAGMKWSFIDK-KSGKPRHLVCNAD 83

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGT KDR +M   PH LIEG + +S+A+GA+ ++IY+RGE++   + L+ A+ E  A
Sbjct: 84  ESEPGTFKDRYLMEFIPHLLIEGMITSSYALGANLSYIYIRGEYMWVYKILERAIAEAKA 143

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG N    GYD+D+ V  G GAYICGEETAL+ESLEGK+G PR+KPPFPA  GL+G 
Sbjct: 144 AGWLGKNILGTGYDLDLYVQIGGGAYICGEETALIESLEGKRGNPRIKPPFPAVSGLWGN 203

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT VNNVE+I+ VP I+    + Y+  G   + GTKL S SG++  P   E  M ++  E
Sbjct: 204 PTVVNNVETISAVPWIVNNSGAKYAEIGIGRSTGTKLISASGNIKKPGVYEIEMGLSVYE 263

Query: 265 LI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPA------GQMRGAIMDYDGLKE----MG 312
            +  +++ GG+      L A++PGGSSVP LPA            +M Y+ L +     G
Sbjct: 264 FMNSDEYLGGMATN-RPLKALVPGGSSVPILPAHLIYKTANNEDRLMSYESLSDGGFPTG 322

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+   IV D    I++  W  S FY HESCGQCTPCREGTGWM +++ R+  G  ++
Sbjct: 323 SMLGSGGFIVYDDRACIVRNTWNFSRFYHHESCGQCTPCREGTGWMEKILHRIENGHGRE 382

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +IDLL  +   IEG TIC LGDAAAWP+   I++FR   E  +
Sbjct: 383 EDIDLLLSIQSKIEGNTICPLGDAAAWPVAAAIRHFREEFEYHV 426


>gi|227874589|ref|ZP_03992752.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
 gi|227844798|gb|EEJ54944.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
          Length = 481

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 190/414 (45%), Positives = 254/414 (61%), Gaps = 15/414 (3%)

Query: 8   IFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I ++++G++   +L    +RG +  ++K        ++N VK SGLRGRGGAGF TG+KW
Sbjct: 19  ILSDMWGVERSWTLDAYRARGGYQGLEKANSMEPADVLNAVKNSGLRGRGGAGFPTGLKW 78

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YLVVNADESEPGTCKD   +   PH L+EG  I S AI    AFIY+R
Sbjct: 79  SFLPPD-DGGPRYLVVNADESEPGTCKDIPHLMANPHVLLEGMAICSRAIRCEHAFIYLR 137

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE  +    L AA+ E  A+G+LG        + I  H GAGAYICGEETALL+SLEG++
Sbjct: 138 GEVAQVYRRLLAAIREATAAGVLGG-------LKITAHAGAGAYICGEETALLDSLEGRR 190

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GL+  PT +NNVE+I+ V  I +   +WY+  G E ++G  +FSISG
Sbjct: 191 GHPRLKPPFPAAQGLFARPTVINNVETISQVAGIFKYSDNWYTSMGTEKSKGHGIFSISG 250

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV +P   E    IT  +L+  +CGGIR G +     + GGSS P     ++    + Y+
Sbjct: 251 HVKHPGQFEAPFGITMRQLL-GYCGGIRAGHELKFWAV-GGSSAPIFTPAELD-VPLTYE 307

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS L T A+ V D +T +++ I R   FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 308 EVVTAGSMLATRAIQVFDETTSVVRVITRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G  Q+ +I+ L  ++  I GR  CALGDAA  P++  I +FR   EE    YH
Sbjct: 368 AGQGQEGDIEKLLSITSEIGGRCFCALGDAAVTPVKSGIAHFR---EEFEQGYH 418


>gi|269977611|ref|ZP_06184578.1| NADH-quinone oxidoreductase subunit f [Mobiluncus mulieris 28-1]
 gi|306817873|ref|ZP_07451612.1| NADH-quinone oxidoreductase subunit F [Mobiluncus mulieris ATCC
           35239]
 gi|307701356|ref|ZP_07638377.1| NADH-quinone oxidoreductase subunit 1 [Mobiluncus mulieris
           FB024-16]
 gi|269934214|gb|EEZ90781.1| NADH-quinone oxidoreductase subunit f [Mobiluncus mulieris 28-1]
 gi|304649352|gb|EFM46638.1| NADH-quinone oxidoreductase subunit F [Mobiluncus mulieris ATCC
           35239]
 gi|307613517|gb|EFN92765.1| NADH-quinone oxidoreductase subunit 1 [Mobiluncus mulieris
           FB024-16]
          Length = 481

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 190/414 (45%), Positives = 254/414 (61%), Gaps = 15/414 (3%)

Query: 8   IFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I ++++G++   +L    +RG +  ++K        ++N VK SGLRGRGGAGF TG+KW
Sbjct: 19  ILSDMWGVERSWTLDAYRARGGYQGLEKANSMEPADVLNAVKNSGLRGRGGAGFPTGLKW 78

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YLVVNADESEPGTCKD   +   PH L+EG  I S AI    AFIY+R
Sbjct: 79  SFLPPD-DGGPRYLVVNADESEPGTCKDIPHLMANPHVLLEGMAICSRAIRCEHAFIYLR 137

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE  +    L AA+ E  A+G+LG        + I  H GAGAYICGEETALL+SLEG++
Sbjct: 138 GEVAQVYRRLLAAIREATAAGVLGG-------LKITAHAGAGAYICGEETALLDSLEGRR 190

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GL+  PT +NNVE+I+ V  I +   +WY+  G E ++G  +FSISG
Sbjct: 191 GHPRLKPPFPAAQGLFARPTVINNVETISQVAGIFKYSDNWYTSMGTEKSKGHGIFSISG 250

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV +P   E    IT  +L+  +CGGIR G +     + GGSS P     ++    + Y+
Sbjct: 251 HVKHPGQFEAPFGITMRQLL-GYCGGIRAGHELKFWAV-GGSSAPIFTPAELD-VPLTYE 307

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS L T A+ V D +T +++ I R   FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 308 EVVTAGSMLATRAIQVFDETTSVVRVITRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G  Q+ +I+ L  ++  I GR  CALGDAA  P++  I +FR   EE    YH
Sbjct: 368 AGQGQEGDIEKLLSITSEIGGRCFCALGDAAVTPVKSGIAHFR---EEFEQGYH 418


>gi|213409916|ref|XP_002175728.1| NADH-quinone oxidoreductase subunit F [Schizosaccharomyces
           japonicus yFS275]
 gi|212003775|gb|EEB09435.1| NADH-quinone oxidoreductase subunit F [Schizosaccharomyces
           japonicus yFS275]
          Length = 418

 Score =  345 bits (885), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 186/414 (44%), Positives = 250/414 (60%), Gaps = 7/414 (1%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           RIF N+     +S++ +  +G +  +  IL+K  + +IN +  S LRGRGG+GF TG KW
Sbjct: 3   RIFPNVNLNVARSIAFAKKQGRYSKLSDILKKKGEILINTISRSMLRGRGGSGFYTGRKW 62

Query: 67  SFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
             +        H   YLVVNA E EPG+ KDR ++   PHT+IEG ++++ AIGA   +I
Sbjct: 63  ESVVATAELLKHPMRYLVVNASEGEPGSFKDRYLLASVPHTVIEGSIMSAKAIGASACYI 122

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLES 181
            VR E+ +E   LQ A++E Y  G LG N  LG D  +DI +H G G YI GEETALLES
Sbjct: 123 SVRAEYYKEALHLQEAINEAYEEGYLGKNI-LGTDFSLDIFIHRGEGNYISGEETALLES 181

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK  +PR++PPFP   G++GC T VNNVE+IA +P IL  G  W+   G  NN GTKL
Sbjct: 182 LEGKAAKPRVRPPFPTEHGVFGCATAVNNVETIANIPCILENGDEWFRSLGSPNNYGTKL 241

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ISG V  P   EE +SI   ELIE H GG+ GGWD+L+AV PGG S+      Q    
Sbjct: 242 FCISGDVRQPNVYEERLSIPLKELIETH-GGVIGGWDSLVAVFPGGPSMGICNKEQCEHM 300

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           +MDYD L+++G+GLGTA+VIV++    + +AI   S FYK E+C +C  CR GT  +  +
Sbjct: 301 LMDYDYLRQIGTGLGTASVIVLNDIDKVFEAILNFSKFYKKETCRKCLACRNGTKIINEL 360

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           +E + +G A    I  L +VS  +   TIC    A +  +    KNF   I+ R
Sbjct: 361 LELVREGKATPSVITDLRQVSNYVTKDTICNFSAAPSLLLNSYFKNFPADIQRR 414


>gi|85857988|ref|YP_460190.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85721079|gb|ABC76022.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 574

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/391 (46%), Positives = 254/391 (64%), Gaps = 12/391 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L+ +   G +  + K      + I+ EVK + LRGRGGAGF  G+KW F+PK  +D+P 
Sbjct: 187 ALAVAKGNGAYQALAKAGTMKPEEILEEVKKANLRGRGGAGFPAGVKWGFIPKD-TDKPV 245

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR IM ++PH LIEG  IA+ AIGA  AFIY+RGEF    + L+ 
Sbjct: 246 YLICNADEGEPGTYKDRQIMEYDPHLLIEGMAIAARAIGARQAFIYIRGEFAWIADILEK 305

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+ E  A G L        ++DIIVH GAGAY+CGEETAL+ES+EGK+GQPR++PPFPA 
Sbjct: 306 AIGEAKADGQLS-------ELDIIVHRGAGAYVCGEETALIESIEGKRGQPRIRPPFPAV 358

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GLYGCPT VNNVE++A VP I+ +GA  +  +G ENN G KLF ISG VN P   E  +
Sbjct: 359 EGLYGCPTIVNNVETLASVPFIIEKGAEAFKQWGFENNYGFKLFGISGCVNKPGVYEYPL 418

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            ++F+EL+E   GG++G    L A I GG SV  L A +++   MDYD   + G+GLG+ 
Sbjct: 419 GVSFNELMEA-AGGVKG---KLKAAIVGGLSVAILKAEELQDLTMDYDSCAKHGTGLGSG 474

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            ++V+     I +   R   FY HESCG+C PCREG+  +++++ +L+ G  +  +I+ +
Sbjct: 475 GIMVISEDFSIPELALRTIKFYAHESCGKCVPCREGSYTLVKILHKLLSGQGEAADIEKI 534

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             +   + G T+C  G+A A PIQ +++ FR
Sbjct: 535 LGICNTVRGLTLCPTGEAFAVPIQAMVEKFR 565


>gi|319789711|ref|YP_004151344.1| NADH-quinone oxidoreductase, F subunit [Thermovibrio ammonificans
           HB-1]
 gi|317114213|gb|ADU96703.1| NADH-quinone oxidoreductase, F subunit [Thermovibrio ammonificans
           HB-1]
          Length = 421

 Score =  342 bits (878), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 186/402 (46%), Positives = 250/402 (62%), Gaps = 9/402 (2%)

Query: 27  GHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           G +  + K L E   D ++ EVK SGLRGRGGAGF TGMKW F      + P + V NAD
Sbjct: 24  GGYSALRKALKEMSPDDVVEEVKLSGLRGRGGAGFPTGMKWEFAAADLKE-PKFFVCNAD 82

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP T KDR I+  +PH LIEG +I ++A G    +IY+RGE+   ++ L+ A+ E Y 
Sbjct: 83  EGEPCTFKDRVIIEKDPHALIEGMLIGAYATGCRYGYIYLRGEYPIGKKILERAIAEAYE 142

Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            G LG N  LG D   D+ VH GAGAYICGEETAL+ESLEGK+G+PR+KPPFP N G   
Sbjct: 143 KGFLGENI-LGTDFSFDLYVHSGAGAYICGEETALIESLEGKRGEPRIKPPFPVNAGYLW 201

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVE++A VP I+ RG  WYS  G  +  G KLF +SG V  P   E  M     
Sbjct: 202 KPTVVNNVETLANVPLIIERGGKWYSQIGSPDCPGPKLFPVSGKVKRPGVYELPMGTPLR 261

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+I +H GGI      L AV PGG+S   L A ++    MD+  L + G+ LG+ A++V+
Sbjct: 262 EIIFEHAGGIVKD-RKLKAVFPGGASSSLLTADEI-DVPMDFPSLAKAGTMLGSGAIMVL 319

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
           D +  ++KA  RL  F++HESCG+CTPCREGT W++R+M R+ +G+  + ++D +  VS+
Sbjct: 320 DETDCVVKAALRLIEFFRHESCGKCTPCREGTDWLVRIMRRIEEGLGTEEDLDTILSVSE 379

Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            +E  + C LG AA  P+   ++ FR    E I +  RC F+
Sbjct: 380 TME-NSFCGLGMAAHNPVASSVRKFRDEFLEHI-KLGRCPFR 419


>gi|19527833|gb|AAL90031.1| AT08706p [Drosophila melanogaster]
          Length = 462

 Score =  342 bits (878), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 179/423 (42%), Positives = 245/423 (57%), Gaps = 23/423 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W    ++LE+G +WI+ +               
Sbjct: 58  LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQ--------------- 102

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               W F+ +  S++ P  ++VN  E EPGTCKDRDI+RHEPH LIEG ++   A+G   
Sbjct: 103 ----WEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 158

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG++    G   D++V  G   Y+CGEETA++
Sbjct: 159 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 217

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P+ V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 218 NCLMGKLGRPRRRPPFLTEKGYFEHPSLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 277

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ +SG VN PCTVEE MSI   +LIE+H GG++GGWDNL AV PGG S P L      
Sbjct: 278 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 337

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 338 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 397

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 398 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 457

Query: 419 YHR 421
           Y +
Sbjct: 458 YAK 460


>gi|24653817|ref|NP_611027.1| CG8102, isoform B [Drosophila melanogaster]
 gi|21627150|gb|AAM68529.1| CG8102, isoform B [Drosophila melanogaster]
          Length = 462

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/423 (42%), Positives = 244/423 (57%), Gaps = 23/423 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W    ++LE+G +WI+ +               
Sbjct: 58  LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQ--------------- 102

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               W F+ +  S++ P  ++VN  E EPGTCKDRDI+RHEPH LIEG ++   A+G   
Sbjct: 103 ----WEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 158

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG++    G   D++V  G   Y+CGEETA++
Sbjct: 159 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 217

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 218 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 277

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ +SG VN PCTVEE MSI   +LIE+H GG++GGWDNL AV PGG S P L      
Sbjct: 278 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 337

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 338 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 397

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 398 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRKIEERLLK 457

Query: 419 YHR 421
           Y +
Sbjct: 458 YAK 460


>gi|296124095|ref|YP_003631873.1| NADH-quinone oxidoreductase, F subunit [Planctomyces limnophilus
           DSM 3776]
 gi|296016435|gb|ADG69674.1| NADH-quinone oxidoreductase, F subunit [Planctomyces limnophilus
           DSM 3776]
          Length = 443

 Score =  339 bits (869), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 189/432 (43%), Positives = 266/432 (61%), Gaps = 17/432 (3%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           M T +  +   ++  Q  +L   ++ G +++  K L      +   VK SGLRGRGGAGF
Sbjct: 1   MSTYEPVLLARIHKEQSHTLDSYLADGGYESFKKALGMTPVEVTTLVKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+F+PK     P YL VN DESEPGT  +R ++  +PH ++EG  I+ +AI ++ 
Sbjct: 61  PTGLKWTFLPKD-HPGPIYLAVNGDESEPGTFNNRILLEKDPHQVLEGIAISCYAIRSNT 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A++Y+R E+     +LQ AV ECY  G+ G N    G+D+D+ +H GA AYICGEET L+
Sbjct: 120 AYLYLRYEYGAAWRALQKAVAECYERGIFGKNVFGSGFDLDVRLHRGAAAYICGEETGLI 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG---RENN 236
           ESLEGK+  PR+KPPFPA  GL+  PT VNN+E++A V  IL+RG  W+   G     NN
Sbjct: 180 ESLEGKRAWPRIKPPFPAIEGLFRKPTIVNNIETMACVTQILKRGIDWFKSIGVPPDPNN 239

Query: 237 ------RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
                  G KL+ +SGHVN P   E  + IT  +LIE++ GG+ GG   + AV+PGG S+
Sbjct: 240 PRDAGSYGPKLYCLSGHVNKPGCYEVPLGITARQLIEEYGGGVPGG-RGIKAVVPGGISM 298

Query: 291 PCLPAGQMRGAIMDYDGLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
             L   ++    +D++G  ++G  GLGTAAV+V+D  T ++  ++  + F+ HESCGQCT
Sbjct: 299 GFLAPSELD-TPLDFNGPGKVGCLGLGTAAVVVIDDQTSMVDVVYNTARFFAHESCGQCT 357

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI---EGRTICALGDAAAWPIQGLIK 406
           PCREGT WM R++ R+  G  +  ++DLL EVS  I    G TIC L D A WP++  I+
Sbjct: 358 PCREGTNWMQRILHRIRSGQGRMEDLDLLLEVSGGIGMMPGTTICGLADGAGWPVKNAIR 417

Query: 407 NFRPLIEERIDQ 418
            FR   EE I  
Sbjct: 418 KFRSEFEEYIQS 429


>gi|283778529|ref|YP_003369284.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068]
 gi|283436982|gb|ADB15424.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068]
          Length = 450

 Score =  338 bits (867), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 187/406 (46%), Positives = 249/406 (61%), Gaps = 17/406 (4%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G +  + K+L+   + +   VK+SGLRGRGGAGF TG+KW+F+P+     P Y  +NADE
Sbjct: 27  GGYSALKKVLKMTPNDVKETVKSSGLRGRGGAGFPTGLKWTFLPQN-HPGPIYFCLNADE 85

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           SEPGT  +R +M  +PH ++EG +IA FA  A  A+ Y+R E+    E ++ A++ECY +
Sbjct: 86  SEPGTFNNRILMEDDPHQVLEGIIIACFATQARAAYFYMRCEYPTAYERVKRAIEECYEA 145

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           G LG N    GY +DI +H GAGAYICGEET L+ESLEGK+  PR+KPPFPA  G +  P
Sbjct: 146 GYLGENILGSGYTLDIHLHRGAGAYICGEETGLIESLEGKRAWPRIKPPFPAVEGAFRKP 205

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFG---RENN------RGTKLFSISGHVNYPCTVEE 256
           T VNNVE+ A V  I R G  W+   G     NN       G KL+ +SGHVN P   E 
Sbjct: 206 TVVNNVETCACVTQIFRNGVDWFKSIGIAPDPNNPRDAGSYGPKLYCLSGHVNKPGCYEA 265

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS-GL 315
            + IT  +LI    GG+  G     AVIPGG S+  L   ++    +D++G  + G  GL
Sbjct: 266 PLGITVKDLINDFGGGVWKG-RKAKAVIPGGISMGLLTGDELH-CPLDFNGPGKFGCLGL 323

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTAAV+VMD  T ++  +     F+ HESCGQCTPCREGT W  R+M R+  G  + +++
Sbjct: 324 GTAAVVVMDDQTSMVDFLLNSCRFFSHESCGQCTPCREGTSWATRMMTRIKHGQGRLKDL 383

Query: 376 DLLYEVSKNI---EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           DLL E+ + I    G TIC L D AAWPI+  IK FR  +EE I +
Sbjct: 384 DLLAEIGETIGIMPGSTICGLADGAAWPIKNCIKKFRGELEEFIKR 429


>gi|298346123|ref|YP_003718810.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063]
 gi|304390117|ref|ZP_07372071.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315657374|ref|ZP_07910256.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236184|gb|ADI67316.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063]
 gi|304326599|gb|EFL93843.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491846|gb|EFU81455.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 442

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 183/408 (44%), Positives = 245/408 (60%), Gaps = 12/408 (2%)

Query: 8   IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I ++++G+ +  +L    +RG +  + K        ++  VK SGLRGRGGAGF  G+KW
Sbjct: 19  ILSDMWGVDRSWTLEAYRARGGYQGLAKANSMDPAEVLAAVKNSGLRGRGGAGFPAGLKW 78

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YL VNADESEPGTCKD   +   PH LIEG  I S AI    AF+Y+R
Sbjct: 79  SFLPPD-DGLPRYLTVNADESEPGTCKDIPQIMANPHALIEGMAICSRAIRCEHAFVYLR 137

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE       L AA+ E   +GLLG       D+ I  H GAGAYICGEETALL+SLEG++
Sbjct: 138 GEVTHPLRRLLAAIREATEAGLLG-------DLKITAHSGAGAYICGEETALLDSLEGRR 190

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GLY  PT +NNVE+I+ V  I +   +WY+  G E ++G  +FS+SG
Sbjct: 191 GHPRLKPPFPAAQGLYARPTVINNVETISQVAGIFKYSDNWYAAMGTEKSKGHGIFSVSG 250

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV  P   E    IT  +L+  +CGG+R G D     + GGSS P     ++    + Y+
Sbjct: 251 HVARPGQFEAPFGITMRQLL-GYCGGVRAGHDLKFWAV-GGSSAPIFTPAELD-VPLTYE 307

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS L T A+ V D +T +++ + R   FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 308 EVAAAGSMLATRAIQVFDETTSVVRVMTRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            G  +  ++D L  ++  I GR  CALGDAA  P++  I+ FR   E+
Sbjct: 368 AGKGEVGDVDKLLSITSEIGGRCFCALGDAAITPVKSGIERFRDEFEK 415


>gi|315654702|ref|ZP_07907608.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii ATCC
           51333]
 gi|315491166|gb|EFU80785.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii ATCC
           51333]
          Length = 442

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 183/408 (44%), Positives = 245/408 (60%), Gaps = 12/408 (2%)

Query: 8   IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I ++++G+ +  +L    +RG +  + K        ++  VK SGLRGRGGAGF  G+KW
Sbjct: 19  ILSDMWGVDRSWTLEAYRARGGYQGLAKANSMDPAEVLAAVKNSGLRGRGGAGFPAGLKW 78

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YL VNADESEPGTCKD   +   PH LIEG  I S AI    AF+Y+R
Sbjct: 79  SFLPPD-DGLPRYLTVNADESEPGTCKDIPQIMANPHALIEGMAICSRAIRCEHAFVYLR 137

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE       L AA+ E   +GLLG       D+ I  H GAGAYICGEETALL+SLEG++
Sbjct: 138 GEVTHPLRRLLAAIREATEAGLLG-------DLKITAHSGAGAYICGEETALLDSLEGRR 190

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GLY  PT +NNVE+I+ V  I +   +WY+  G E ++G  +FS+SG
Sbjct: 191 GHPRLKPPFPAAQGLYARPTVINNVETISQVAGIFKYSDNWYAAMGTEKSKGHGIFSVSG 250

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV  P   E    IT  +L+  +CGG+R G D     + GGSS P     ++    + Y+
Sbjct: 251 HVARPGQFEAPFGITMRQLL-GYCGGVRAGHDLKFWAV-GGSSAPIFTPAELD-VPLTYE 307

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS L T A+ V D +T +++ + R   FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 308 EVAAAGSMLATRAIQVFDETTSVVRVMTRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            G  +  ++D L  ++  I GR  CALGDAA  P++  I+ FR   E+
Sbjct: 368 AGKGEVGDVDKLLSITSEIGGRCFCALGDAAITPVKSGIERFRDEFEK 415


>gi|227542298|ref|ZP_03972347.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181898|gb|EEI62870.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 454

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/389 (48%), Positives = 247/389 (63%), Gaps = 5/389 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           RG +  +   L      +++ +  SGLRGRGGAGF  G KWSF+P V + +P YLVVN D
Sbjct: 44  RGGYQALRTALAMEPKELVDLILDSGLRGRGGAGFPVGRKWSFVP-VDNPKPKYLVVNGD 102

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  ++   PHTL+EG +I+  A  +  AFIY+RGE +     LQAA+ E Y 
Sbjct: 103 ESEPGTCKDMPLLMATPHTLVEGAIISCLAFHSEHAFIYLRGEVVHIARRLQAAIQEAYR 162

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
            G  G N    G  V I VH GAGAYICGEETALL+SLEGK+G PRL+PPFPA  GLY  
Sbjct: 163 KGYAGENIMGSGKTVHIQVHSGAGAYICGEETALLDSLEGKRGHPRLRPPFPAVEGLYAS 222

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVESI+ VP I+R GA WY+  G E ++G  ++S+SGHV +P   E  + IT  E
Sbjct: 223 PTVINNVESISSVPAIVRNGAEWYTQVGTEKSKGATIYSLSGHVTHPGQYEAPLGITLRE 282

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           LI+   GGIR G   L    PGGSS   L A  +    +DY+ L+E GS LGT A+ + D
Sbjct: 283 LIDM-AGGIREG-HTLKYFTPGGSSTQMLTAEHLD-VPLDYEALREAGSMLGTKALQIFD 339

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++   R   FYKHESCG+CTPCREGT W++++++RL +G  +  ++D L  +  +
Sbjct: 340 DTTSVVRTTTRFVEFYKHESCGKCTPCREGTWWLLQLLQRLERGEGKPGDVDKLISICDH 399

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I GR+ CAL D A   +   + NFR   E
Sbjct: 400 IGGRSFCALADGAVACVTSAVANFREEFE 428


>gi|227488703|ref|ZP_03919019.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091364|gb|EEI26676.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 454

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/389 (48%), Positives = 247/389 (63%), Gaps = 5/389 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           RG +  +   L      +++ +  SGLRGRGGAGF  G KWSF+P V + +P YLVVN D
Sbjct: 44  RGGYQALRTALTMEPKELVDLILDSGLRGRGGAGFPVGRKWSFVP-VDNPKPKYLVVNGD 102

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGTCKD  ++   PHTL+EG +I+  A  +  AFIY+RGE +     LQAA+ E Y 
Sbjct: 103 ESEPGTCKDMPLLMATPHTLVEGAIISCLAFHSEHAFIYLRGEVVHIARRLQAAIQEAYR 162

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
            G  G N    G  V I VH GAGAYICGEETALL+SLEGK+G PRL+PPFPA  GLY  
Sbjct: 163 KGYAGENIMGSGKTVHIQVHSGAGAYICGEETALLDSLEGKRGHPRLRPPFPAVEGLYAS 222

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVESI+ VP I+R GA WY+  G E ++G  ++S+SGHV +P   E  + IT  E
Sbjct: 223 PTVINNVESISSVPAIVRNGAEWYTQVGTEKSKGATIYSLSGHVTHPGQYEAPLGITLRE 282

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           LI+   GGIR G   L    PGGSS   L A  +    +DY+ L+E GS LGT A+ + D
Sbjct: 283 LIDM-AGGIREG-HTLKYFTPGGSSTQMLTAEHLD-VPLDYEALREAGSMLGTKALQIFD 339

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +T +++   R   FYKHESCG+CTPCREGT W++++++RL +G  +  ++D L  +  +
Sbjct: 340 DTTSVVRTTTRFVEFYKHESCGKCTPCREGTWWLLQLLQRLERGEGKPGDVDKLISICDH 399

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           I GR+ CAL D A   +   + NFR   E
Sbjct: 400 IGGRSFCALADGAVACVTSAVANFREEFE 428


>gi|51892729|ref|YP_075420.1| NADH dehydrogenase I subunit F [Symbiobacterium thermophilum IAM
           14863]
 gi|51856418|dbj|BAD40576.1| NADH dehydrogenase I subunit F [Symbiobacterium thermophilum IAM
           14863]
          Length = 425

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 182/400 (45%), Positives = 245/400 (61%), Gaps = 14/400 (3%)

Query: 25  SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           ++G +  + K L      I+ EVK + LRGRGGAGF  G+KWSF+P     RP YL VNA
Sbjct: 25  AQGGYQALRKALAMEPQAIVEEVKKANLRGRGGAGFPAGVKWSFLPN--DGRPRYLTVNA 82

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DESEPGTC +R ++   PH LIEG +I ++A     +FIY+RGEF R  E L  A+++  
Sbjct: 83  DESEPGTCNNRTLIYANPHQLIEGILITAYANRITQSFIYIRGEFKRGAEILMKAIEDAR 142

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
             G +G N    G+  +I VH GA AYICGEE+ALL SLEG++G+PR+KPPFPA VGLYG
Sbjct: 143 RKGYVGQNILGTGFSQEITVHRGASAYICGEESALLNSLEGRRGEPRVKPPFPAVVGLYG 202

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNR----GTKLFSISGHVNYPCTVEESMS 259
           CPT +NNVE+I+ VP I++ G  WY+      +     G K+F++SG V  P   E  M 
Sbjct: 203 CPTIINNVETISNVPHIIKNGWEWYTKITANPDNPKSCGPKIFTVSGCVQRPGNYELPMG 262

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
           +   ++IE   GG+R G   L AV PGGSS P L    +    MD++ +   GS LGTAA
Sbjct: 263 VKLRDVIEI-AGGLRPG-RKLKAVQPGGSSTPMLTPDHL-DVPMDFESVAAAGSLLGTAA 319

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           VIV D + D++      + FY HESCGQCTPCREGT W+ RV  R+ +G   + ++ ++ 
Sbjct: 320 VIVYDDTVDLVDVALYWARFYSHESCGQCTPCREGTHWLERVFTRIKEGGGTEGDLKMIA 379

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++   + G TIC L DAA      L+K    L  E +D+Y
Sbjct: 380 DMQTQMAGTTICVLSDAAVAFPASLLK----LFPEELDRY 415


>gi|47194143|emb|CAG14423.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 281

 Score =  334 bits (857), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 187/231 (80%), Gaps = 1/231 (0%)

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGE   E    Q A++E YA+GL+G N+   GYD D+ V  GAGAYICGEETAL+ESLEG
Sbjct: 51  RGEGYNESAKRQVAINEAYAAGLIGKNACGSGYDFDVFVMRGAGAYICGEETALIESLEG 110

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG SW+ GFGRE N GTKLF+I
Sbjct: 111 KQGKPRLKPPFPADVGVFGCPTTVANVETVSVAPTICRRGGSWFVGFGRERNSGTKLFNI 170

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHVN+PCTVEE MS+   +LIE+H GG+RGGWDNLLAVIPGGSS P +P       +MD
Sbjct: 171 SGHVNHPCTVEEEMSVPLKDLIERHAGGVRGGWDNLLAVIPGGSSTPLIPKSVCEEVLMD 230

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
           +DGL +  +GLGTAAVIVMD+STDII+AI RL  FYKHESCGQCTPCREG+
Sbjct: 231 FDGLIQAQTGLGTAAVIVMDKSTDIIRAIARLIEFYKHESCGQCTPCREGS 281


>gi|118579072|ref|YP_900322.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118580051|ref|YP_901301.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118581589|ref|YP_902839.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118501782|gb|ABK98264.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
 gi|118502761|gb|ABK99243.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
 gi|118504299|gb|ABL00782.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
          Length = 427

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/423 (44%), Positives = 247/423 (58%), Gaps = 8/423 (1%)

Query: 5   QDRIFTNL-YGLQGKSLSDSMSRGHWDNVDKILEKGRDWII-NEVKASGLRGRGGAGFST 62
            +RIF N        +L     RG +  ++  L+  +   +  EV ASGLRGRGGAGF T
Sbjct: 3   SERIFFNFPVTADSHTLKAYQGRGGYQALENALKTLQPIDVEKEVMASGLRGRGGAGFPT 62

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KWSF+ K       YL  NADE EPGT KDR I  H  H LIEG ++A++A+    AF
Sbjct: 63  GSKWSFVNKKAPVV--YLCCNADEGEPGTFKDRWIFEHNSHQLIEGMILAAYALNVRNAF 120

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLE 180
           IY+RGEF      L  A+ E Y +G LG N  LG  +  DI V  G GAY+CGEE++L  
Sbjct: 121 IYIRGEFDLSFRRLMDAMSEAYKAGYLGENI-LGSSFSCDIRVMQGGGAYVCGEESSLYT 179

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG KG PR KPPFPA  GLY  PT VNNVE++A VP I+  GA  +S  G E + GTK
Sbjct: 180 SIEGFKGYPRNKPPFPAVQGLYKAPTVVNNVETLANVPWIMTNGAKAFSAMGTEKHPGTK 239

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F +SGHV  P   E  +     +LI + CGGI  G + L AVIPGGSS P L    +  
Sbjct: 240 IFGVSGHVKKPGLYELPLGYPLKKLIFEECGGILNGKE-LKAVIPGGSSTPILLPQDVET 298

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A +D + L    + LG+  VIV+     +++ +  LS FY HESCGQCTPCREG+ WM  
Sbjct: 299 ANLDAECLSTYRTMLGSGGVIVIAEGVCMVRLLHTLSRFYAHESCGQCTPCREGSAWMND 358

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V G   K +++ L  ++K I G T+CALGDAA+ P+   I  FR   +  I+   
Sbjct: 359 IISRIVAGKGVKGDLESLERITKGIMGNTVCALGDAASMPVINFITKFRAEFDYYIEHGR 418

Query: 421 RCN 423
             N
Sbjct: 419 SMN 421


>gi|261416516|ref|YP_003250199.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372972|gb|ACX75717.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327301|gb|ADL26502.1| NADH-quinone oxidoreductase, F subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 435

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 180/414 (43%), Positives = 252/414 (60%), Gaps = 5/414 (1%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           ++ T  +G   + +      G + N+ +++    +  +I+ V+ S LRGRGGAGF TGMK
Sbjct: 6   KVCTQNFGKGAQDIEVYKKLGGYSNISERLFNMSQFELIDYVQRSNLRGRGGAGFPTGMK 65

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSF+P+  + +P Y+VVNADE E GT KD  +M  +PH LIEG +IA++A+G+  A+IY 
Sbjct: 66  WSFVPR-GTGKPVYIVVNADEGEGGTFKDHFLMLEDPHRLIEGLIIAAWALGSRAAYIYC 124

Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGEF+   E+L  A+++ YA+G LG N     +  DI VH GAGAYICGEETAL+ SLEG
Sbjct: 125 RGEFLPCIEALNKALNQAYAAGYLGENICGTKFSFDIFVHRGAGAYICGEETALINSLEG 184

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           +KGQPRLKPPFPA  G +  PT VNNVE+I  +P IL    S Y+  G     GTK+F I
Sbjct: 185 QKGQPRLKPPFPAVCGAWKSPTCVNNVETIMSLPWILSHDPSDYAKMGTPRAGGTKVFCI 244

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +      +I  + GG+ GG   L AV+PGGSS   L A +   A MD
Sbjct: 245 SGDVKNPGVYEAPLGTPMMTMINDYAGGVVGG--KLKAVLPGGSSCAPLTAEEAAVATMD 302

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           Y+ L  M +  G+ A+IV++ + +++  +  L  FY HESCGQCTPCREGTG + R++ +
Sbjct: 303 YECLASMKTMFGSGAMIVINDTHNMVDLLNCLGNFYSHESCGQCTPCREGTGLLHRILNQ 362

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +V G     +++L+  +S    G TIC L  +   P+      FR   +E I +
Sbjct: 363 MVAGNGHDGDVELMQSLSSGFGGVTICPLSISLGGPVSSYTAKFRADFDEYIAK 416


>gi|182412305|ref|YP_001817371.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
 gi|177839519|gb|ACB73771.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
          Length = 452

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/406 (44%), Positives = 243/406 (59%), Gaps = 23/406 (5%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           +  G ++ + +   +    +I+EVK SGLRGRGGAGF  G+KW  + +  S +P YL+VN
Sbjct: 27  LRNGGYEVMKRAFTRPPQELIDEVKKSGLRGRGGAGFPCGVKWGLVDRK-SGKPIYLIVN 85

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGT KDR I+  +PH LIEG +I+ FA     A+IY+RGEF      L+ A+ E 
Sbjct: 86  ADESEPGTFKDRYIIHQDPHQLIEGTMISCFANNVQQAYIYIRGEFPHGARILERAIQEA 145

Query: 144 YASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF-PANVGL 201
                +G N     Y  +I VH GAGAYICGEET L+ESLEGK+  PR+KPPF PA +G+
Sbjct: 146 REHNFVGKNILGTAYSCEIYVHRGAGAYICGEETGLIESLEGKRAYPRIKPPFFPAVLGV 205

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMSI 260
           Y CPT VNNVE++  V  I   G   ++  G  NN GT++F +SGHV  P   E E+  +
Sbjct: 206 YQCPTIVNNVETLCHVKYIAEVGGEAFAKIGTPNNTGTRIFCVSGHVQRPGYYEFETGKV 265

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ------------------MRGAI 302
           T  +L+   CGG   G     AVIPGGSS   +  G+                  +    
Sbjct: 266 TLGQLLNDVCGGPLPG-RKFKAVIPGGSSAKIMRFGERYKGKRKAGTEMVDYDWGVEDVP 324

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L  +G+  G+  VIVMD S ++++A+  ++ FY HESCGQCTPCREG+ WM R+ 
Sbjct: 325 MDFDSLAMIGTMGGSGGVIVMDDSVNMVEALANINAFYSHESCGQCTPCREGSLWMKRIT 384

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            R+V   A++ +  LL  V+  I GRTICA G+A +WP Q  ++ F
Sbjct: 385 TRMVHANAREEDAALLKSVADQIPGRTICAFGEACSWPTQSFVQKF 430


>gi|282891845|ref|ZP_06300325.1| hypothetical protein pah_c198o038 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498278|gb|EFB40617.1| hypothetical protein pah_c198o038 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 432

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 178/371 (47%), Positives = 235/371 (63%), Gaps = 7/371 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I+ VK S LRGRGGAGF TGMKW F+PK     P YLV N+DESEPGT KDR ++ +
Sbjct: 41  DALIDLVKQSELRGRGGAGFLTGMKWGFVPK-NPQIPKYLVCNSDESEPGTFKDRLLIEN 99

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV- 159
           +PH +IEG ++AS+AIGA  AFIY RGEF      L+ AV +    G LG NS LG  V 
Sbjct: 100 DPHQVIEGIILASYAIGAKLAFIYCRGEFYEGIRHLEKAVQDAKQKGYLG-NSILGSQVS 158

Query: 160 -DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            +IIVH GAGAYI GEETALL SLEG +  PRLKPPFPA  GLYG PT +NNVE+++ V 
Sbjct: 159 LEIIVHPGAGAYIAGEETALLNSLEGYRATPRLKPPFPAVEGLYGKPTIINNVETLSNVV 218

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I+ RG  WY   G+  N GTK+F +SG V  P   E  +  +  E++E   G + G   
Sbjct: 219 HIVNRGVEWYKSIGKPKNTGTKIFQVSGQVQKPGCFEFPLGTSLREVLEAAGGMLPG--R 276

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              A  PGGSS   L    +    MD++ L    S LGTA++IVMD + D++K   RL  
Sbjct: 277 RFKACYPGGSSCALLTERDL-DITMDFEALAARKSALGTASIIVMDDTADMVKVAHRLMQ 335

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           FY++ESCG+CTPCREGT W+++++ER+  G     ++  + +V +++E  + C L   AA
Sbjct: 336 FYQNESCGKCTPCREGTRWVVQMLERIEAGKGTIWDLKKIEQVCQHMEVESFCPLAVGAA 395

Query: 399 WPIQGLIKNFR 409
            PI   ++ F+
Sbjct: 396 PPIVSAMREFK 406


>gi|304311499|ref|YP_003811097.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1]
 gi|301797232|emb|CBL45452.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1]
          Length = 455

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 171/375 (45%), Positives = 241/375 (64%), Gaps = 6/375 (1%)

Query: 46  EVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTL 105
           E+KASGLRGRGGAGF TG+KWS +P        Y+V NADE EPGT KDR +M   PH L
Sbjct: 70  EIKASGLRGRGGAGFPTGVKWSLIPMGPDAGAKYMVCNADEMEPGTFKDRMLMETNPHQL 129

Query: 106 IEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVH 164
           +E  +++++AI A  A+I++RGE+I   E L AA+ E +A+G LG N    G+ VD++VH
Sbjct: 130 VESMIVSAYAIQAKRAYIFLRGEYIEAAERLNAAIQEAHAAGYLGENILGSGWGVDLMVH 189

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
            GAG YICGEETAL+ SLEG++  PR KPPFP   GL+G PT VNNVE+++ VP IL RG
Sbjct: 190 TGAGRYICGEETALINSLEGRRANPRSKPPFPQIAGLWGRPTIVNNVETVSNVPAILLRG 249

Query: 225 ASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
           A W+ G   G   + GTKL+ +SG V +P   E  + IT  EL+  H GG+R G + ++ 
Sbjct: 250 ADWFKGLSQGLSGDAGTKLYGVSGRVKHPGLWELPIGITCRELLYNHAGGMREGLE-MVT 308

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
            +PGG+S   L    +  A MDYD + + GS LGT  ++V+D   +I+  +  L  F+  
Sbjct: 309 WLPGGASTDFLMPEHLDLA-MDYDTIMKNGSRLGTGLIMVVDNRHNIVSVVRNLEQFFAR 367

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPI 401
           ESCG CTPCR+G  W +++++ +  G  Q  +++ L ++++ +  G+T CAL   A  P+
Sbjct: 368 ESCGWCTPCRDGLPWTVKLLQSIEAGQGQAGDLETLDQMTRFLGPGKTFCALAPGAMEPL 427

Query: 402 QGLIKNFRPLIEERI 416
           Q  +K FRP  E+ I
Sbjct: 428 QSALKFFRPEFEKGI 442


>gi|149909800|ref|ZP_01898451.1| NuoF2 NADH I CHAIN F [Moritella sp. PE36]
 gi|149807132|gb|EDM67088.1| NuoF2 NADH  I CHAIN F [Moritella sp. PE36]
          Length = 425

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 171/384 (44%), Positives = 236/384 (61%), Gaps = 6/384 (1%)

Query: 27  GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           G +  + KIL     D +I+ VKAS LRGRGGAGF TG+KWSF+PK    + HYL  NAD
Sbjct: 25  GGYQGLKKILTTYSPDKVIDAVKASNLRGRGGAGFPTGLKWSFVPKD-DGKIHYLCCNAD 83

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EPGT KDR +M  +PH +IEG +IA++AI A  A+IY+RGE+    + +  A+   YA
Sbjct: 84  EGEPGTFKDRLLMERDPHRVIEGMIIAAYAIRAEVAYIYIRGEYGLSIDMITQAIKAAYA 143

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
            G LG N     + ++I VH GAGAYICGEETALLES+EG++GQP+LKPPFPA  GLY C
Sbjct: 144 KGYLGKNIFNTDFCLNIYVHKGAGAYICGEETALLESIEGRRGQPKLKPPFPAVSGLYDC 203

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVE+   V  I  +G  W++  G ++  G +LF +SG +  P  VE  M +   E
Sbjct: 204 PTVINNVETFVCVTHIFAKGVDWFTSIGPDDAPGPRLFGLSGQLQNPGIVELPMGLPLSE 263

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L+  + GG   G     AVIPGG S P +P   +    M++  L    S +G+AAVI +D
Sbjct: 264 LVYDYGGGPLTG--KFKAVIPGGLSAPMIPLAGLD-VKMNFADLATADSMMGSAAVIALD 320

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +  I     R++ F+ HESCG+C PCREG  W  +++ R+  G  +  +++ L  +   
Sbjct: 321 ETASIPAVGRRIAEFFSHESCGKCAPCREGLPWASKILNRIESGQGRPGDLEQLQVICGG 380

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + CALG  AAW I+  +K+F
Sbjct: 381 VFNNSFCALGVGAAWAIRATLKHF 404


>gi|320105162|ref|YP_004180753.1| NADH dehydrogenase subunit F [Isosphaera pallida ATCC 43644]
 gi|319752444|gb|ADV64204.1| NADH dehydrogenase subunit F [Isosphaera pallida ATCC 43644]
          Length = 475

 Score =  329 bits (843), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 182/412 (44%), Positives = 256/412 (62%), Gaps = 12/412 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            G +L    +RG +    K L     D ++N VKAS LRGRGGAGF TG+KWSF+PK   
Sbjct: 16  NGHTLRVYEARGGYQAARKALTTMSPDDVVNLVKASELRGRGGAGFPTGLKWSFLPK--- 72

Query: 75  DRPHYLV-VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           DR   L+ VN DESEP T  +R ++  +PH  +EG +I+ FA  A  A++Y+R E+I   
Sbjct: 73  DRTETLMCVNGDESEPATFNNRLLIERDPHQFLEGILISCFATRATTAYVYLRFEYIAGY 132

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           + ++ A+ E  A+G LG N    G+D+ +++H GAGAYICGEET L+ESLEGK+G PR+K
Sbjct: 133 KMMERAIAEAEAAGHLGRNIYGSGFDLKVVLHRGAGAYICGEETGLIESLEGKRGWPRIK 192

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  G +  PT VNNVE++  VP I+ RGA W+   G   + G KL+ +SGHVN   
Sbjct: 193 PPFPAVEGAFRKPTVVNNVETLCCVPHIVERGADWFKSIGTPKSYGPKLYCVSGHVNKQV 252

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            VE  + +T  +LIE+H GG+  G     A +PGG S+  L   +     +D++ L+  G
Sbjct: 253 CVELPLGVTTRQLIEEHAGGVWKG-RKAKAAVPGGISMGLLAESEF-DVPLDFEALRPTG 310

Query: 313 S-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
             GLGTAAV V+D +  II  +   + F+ HESCGQCTPCREGT W+ + + R+  G  +
Sbjct: 311 CLGLGTAAVTVLDETMPIIDYLAICARFFAHESCGQCTPCREGTNWLNKTIHRIKNGGGR 370

Query: 372 KREIDLLYEVSKNI---EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             ++D+L ++S+N+    G TIC L D AAWP++  +  FR  +EE I  + 
Sbjct: 371 LEDLDILEQLSQNMGITPGTTICGLADGAAWPVKNALAKFRGELEEYIRTHQ 422


>gi|226227804|ref|YP_002761910.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27]
 gi|226090995|dbj|BAH39440.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27]
          Length = 439

 Score =  328 bits (842), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 173/402 (43%), Positives = 247/402 (61%), Gaps = 4/402 (0%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           SL+   +RG + ++ K L   +   +  EV ASGL G GGA F  G KW  + K+    P
Sbjct: 18  SLAAYKARGGYQSLQKALTSMQPTDVTKEVAASGLLGHGGAAFPAGRKWGVI-KLTDGEP 76

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
           HY+ +NADE EPGT KDR ++ H PH  IEG ++AS+AI    AFIY+RGEF      L+
Sbjct: 77  HYVCMNADEGEPGTFKDRWLLEHVPHLCIEGLILASYAIMGRHAFIYIRGEFDLPFRRLR 136

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E YA+GLLG N    GY +DI+++ GAG+Y+CGE +A+L SLEGKKG PR +PP  
Sbjct: 137 DAIEEAYAAGLLGENILGTGYSLDIVLYRGAGSYVCGEASAMLASLEGKKGWPRNRPPRL 196

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GLY  PT VNNVE++A +P I+  G   +   G   + GT++ SISGH+  P   E 
Sbjct: 197 TVKGLYQRPTVVNNVETLANIPAIIGEGGETFRKVGLPKSPGTQMISISGHLVRPGVYEI 256

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               ++++ I + CGGI GG   L  VIPGG S   L A +++G  +D++     GS +G
Sbjct: 257 EYGYSWEKFIYEDCGGILGG-RALKCVIPGGVSTKILDANELKGRTLDHNSALAAGSQIG 315

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  +IV+   T +++    +  FY HESCGQCTPCREG GWM R+++R+V+G  +  +ID
Sbjct: 316 SGGMIVIAEGTCMVRVARVIQRFYHHESCGQCTPCREGMGWMERILDRIVRGEGRPEDID 375

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            LY +S   +G TIC+LGD+A +    ++ ++R   E  I  
Sbjct: 376 RLYHISTANDGTTICSLGDSAGYACSAILDHYRDEFEHFITH 417


>gi|91065093|gb|ABE03925.1| NuoF+E [Theonella swinhoei bacterial symbiont clone pSW1H8]
          Length = 639

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 185/412 (44%), Positives = 256/412 (62%), Gaps = 13/412 (3%)

Query: 14  GLQGKSLSDSMSRGH--WDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           G++G    D   RGH  ++  ++ L +     +I+EVK SGLRGRGGAGF TG+KWSFMP
Sbjct: 222 GVEGSHTLDYY-RGHGGYEAAERALTRLSPAEVIDEVKVSGLRGRGGAGFPTGVKWSFMP 280

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
            V   R  +++ NADESEPG+ KDR I+  +PH LIEG +IA  AI A    IY+RGE+ 
Sbjct: 281 PV-DGRQRFILCNADESEPGSFKDRYILEDDPHQLIEGMIIAGHAISATLGVIYIRGEYY 339

Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQ 188
                L+AA+ E  A+GLLG     G ++D  +I+H GAGAYICGEETAL+ S EG +  
Sbjct: 340 LGYRRLRAAIAEARAAGLLG-RGLFGTEIDFELILHRGAGAYICGEETALMNSFEGLRAN 398

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PRLKPPFPA +G+YG PTT+NNV ++  V  I+ +GA+W++  G E+++GTKL+ ISG V
Sbjct: 399 PRLKPPFPAQLGIYGLPTTINNVTTLTSVVHIIGQGAAWFAAIGSEDSKGTKLYQISGPV 458

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRGAIMDYDG 307
             P   E  +  TF ELI    GG         A IPGGSS P LP         MDY  
Sbjct: 459 ERPGVYELPLGATFRELIFDLAGGPTMPAK---AFIPGGSSAPMLPFEDAYLDTPMDYGS 515

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVMERLV 366
           L E+GS LGT  VIV+     ++ AI+ L  FY HESCG+CTPCREG   W+ ++ ++L+
Sbjct: 516 LAELGSMLGTGGVIVIPEEKCMVSAIYNLVRFYAHESCGKCTPCREGVATWLPKLYQKLL 575

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            G+    ++ L+ E++ +++G   C L D+ A P++    +FR   E  +++
Sbjct: 576 AGLGSAGDLTLIEELAHHLKGTAFCLLADSCALPVEASFAHFRSEYEHLVER 627


>gi|15643000|ref|NP_228042.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|4980726|gb|AAD35319.1|AE001707_6 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
          Length = 545

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/402 (41%), Positives = 245/402 (60%), Gaps = 4/402 (0%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N+  +    + + ++R  +  + K L+     II E+K SGLRGRGGAGF TG+KW 
Sbjct: 113 VLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEIIEEIKRSGLRGRGGAGFPTGLKWE 172

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F  K  +D+  Y++ NADE EPGT KDR IM  +PH+LIEG +IA +A+GA   +IY+RG
Sbjct: 173 FTYKASADQ-KYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRG 231

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    E L+ AV++ Y  G LG N    G++ D+ +  GAGAY+ GEETAL+ES+EGK 
Sbjct: 232 EYHSSIEILKKAVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIESIEGKP 291

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
            +PRLKPP+P   GL+G PT VNNVE+   VP I+  GA W+  FG E++ GTK+FS+ G
Sbjct: 292 ARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTKVFSLVG 351

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           +V     VE  M +T  +LI K  GGI GG    L V+  G S             +D+D
Sbjct: 352 NVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK--LKVVQTGGSAGTFIGPDKLDVPLDFD 409

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
              + G  LG+  ++V D +  ++     +  F++HESCG+CTPCREGT  ++ ++ER+ 
Sbjct: 410 SYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVNILERIS 469

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +G  +K ++D L E+++N    + C LG +   P+  ++ NF
Sbjct: 470 RGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNF 511


>gi|148269832|ref|YP_001244292.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|147735376|gb|ABQ46716.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
          Length = 545

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/402 (41%), Positives = 245/402 (60%), Gaps = 4/402 (0%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N+  +    + + ++R  +  + K L+     +I E+K SGLRGRGGAGF TG+KW 
Sbjct: 113 VLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFPTGLKWE 172

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F  K  +D+  Y++ NADE EPGT KDR IM  +PH+LIEG +IA +A+GA   +IY+RG
Sbjct: 173 FTYKASADQ-KYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRG 231

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    E L+ AV++ Y  G LG N    G++ D+ +  GAGAY+ GEETAL+ES+EGK 
Sbjct: 232 EYHSSIEILKKAVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIESIEGKP 291

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
            +PRLKPP+P   GL+G PT VNNVE+   VP I+  GA W+  FG E++ GTK+FS+ G
Sbjct: 292 ARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTKVFSLVG 351

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           +V     VE  M +T  +LI K  GGI GG    L V+  G S             +D+D
Sbjct: 352 NVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK--LKVVQTGGSAGTFIGPDKLDVPLDFD 409

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
              + G  LG+  ++V D +  ++     +  F++HESCG+CTPCREGT  ++ ++ER+ 
Sbjct: 410 SYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVNILERIS 469

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +G  +K ++D L E+++N    + C LG +   P+  ++ NF
Sbjct: 470 RGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNF 511


>gi|170288518|ref|YP_001738756.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|170176021|gb|ACB09073.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
          Length = 545

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 166/402 (41%), Positives = 244/402 (60%), Gaps = 4/402 (0%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N+  +    + + ++R  +  + K L+     +I E+K SGLRGRGGAGF TG+KW 
Sbjct: 113 VLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFPTGLKWE 172

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F  K  +D+  Y++ NADE EPGT KDR IM  +PH+LIEG +IA +A+GA   +IY+RG
Sbjct: 173 FTYKASADQ-KYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRG 231

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    E L+ AV+  Y  G LG N    G++ D+ +  GAGAY+ GEETAL+ES+EGK 
Sbjct: 232 EYHSSIEILKKAVERAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIESIEGKP 291

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
            +PRLKPP+P   GL+G PT VNNVE+   VP I+  GA W+  FG E++ GTK+FS+ G
Sbjct: 292 ARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTKVFSLVG 351

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           +V     VE  M +T  +LI K  GGI GG    L V+  G S             +D+D
Sbjct: 352 NVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK--LKVVQTGGSAGTFIGPDKLDVPLDFD 409

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
              + G  LG+  ++V D +  ++     +  F++HESCG+CTPCREGT  ++ ++ER+ 
Sbjct: 410 SYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVNILERIS 469

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +G  +K ++D L E+++N    + C LG +   P+  ++ NF
Sbjct: 470 RGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNF 511


>gi|254670961|emb|CBA07639.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria
           meningitidis alpha153]
          Length = 331

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 164/310 (52%), Positives = 210/310 (67%), Gaps = 5/310 (1%)

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDV 159
           PH LIEG +IA +A+GA   + Y+ GE     +  +AA+++  A+G LG N  LG  ++ 
Sbjct: 4   PHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRFEAALEQARAAGFLGKNI-LGSDFEF 62

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++  HHG GAYICGEETALLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ + VP 
Sbjct: 63  ELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFSSVPF 122

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+R G   ++  G  N  GTKLF ISGHV  P   E  +   F E++ K  GG+RGG   
Sbjct: 123 IIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNYEVPLGTPFAEVL-KMAGGMRGG-KK 180

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L AVIPGGSS P LPA  M    MDYD + + GS LG+ A+IVMD    ++KA+ RLS F
Sbjct: 181 LKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSMLGSGAIIVMDEDVCMVKALERLSYF 240

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           Y  ESCGQCTPCREGTGW+ R++ R+V+G  +  ++DLL  V K + GRTICAL DAA +
Sbjct: 241 YYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMEDLDLLDSVGKQMAGRTICALADAAVF 300

Query: 400 PIQGLIKNFR 409
           P++   K+FR
Sbjct: 301 PVRSFTKHFR 310


>gi|222099432|ref|YP_002534000.1| NADP-reducing hydrogenase, subunit C [Thermotoga neapolitana DSM
           4359]
 gi|221571822|gb|ACM22634.1| NADP-reducing hydrogenase, subunit C [Thermotoga neapolitana DSM
           4359]
          Length = 545

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 168/409 (41%), Positives = 248/409 (60%), Gaps = 5/409 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ++++ RI   N+  +    + + ++R  +  + K L+   + II E+K SGLRGRGGAGF
Sbjct: 106 VSEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMKPEEIIEEIKRSGLRGRGGAGF 165

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  K  SD+  Y++ NADE EPGT KDR IM  +PH+LIEG +IA +A+GA  
Sbjct: 166 PTGLKWEFTYKASSDQ-KYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGARK 224

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+    E L+ A+++ Y  G LG N    G+  D+ +  GAGAY+ GEETAL+
Sbjct: 225 GYIYIRGEYYSSIEILKRAIEQAYEYGFLGENILGTGFSFDLKIRLGAGAYVAGEETALI 284

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK  +PRLKPP+P   GL+G PT VNNVE+   VP I+  GA W+  FG E++ GT
Sbjct: 285 ESIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIILNGADWFRKFGTESSPGT 344

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS+ G+V     VE  M +T  +LI K  GG+  G    L ++  G S          
Sbjct: 345 KVFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGVEKG--KRLKLVQTGGSAGTFIGPDKL 402

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D   + G  LG+  ++V D S   +     +  F++HESCG+CTPCREGT   +
Sbjct: 403 DVPLDFDSYAKYGVSLGSGVILVADESHCAVDLALTVMRFFEHESCGKCTPCREGTRIAV 462

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            ++ER+ +G  +K ++DLL +V++N    + C LG +   P+  ++ NF
Sbjct: 463 EILERISRGEGRKEDLDLLRKVAENAGETSFCGLGQSIPVPLLSIVNNF 511


>gi|281412285|ref|YP_003346364.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|281373388|gb|ADA66950.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 545

 Score =  323 bits (828), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 166/405 (40%), Positives = 247/405 (60%), Gaps = 10/405 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N+  +    + + ++R  +  + K L+     +I E+K SGLRGRGGAGF TG+KW 
Sbjct: 113 VLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFPTGLKWE 172

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F  K  +D+  Y++ NADE EPGT KDR IM  +PH+LIEG +IA +A+GA   +IY+RG
Sbjct: 173 FTYKASADQ-KYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRG 231

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    E L+ A+++ Y  G LG N    G++ D+ +  GAGAY+ GEETAL+ES+EGK 
Sbjct: 232 EYHSSIEILKKAIEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIESIEGKP 291

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
            +PRLKPP+P   GL+G PT VNNVE+   VP I+  GA W+  FG +++ GTK+FS+ G
Sbjct: 292 ARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTDSSPGTKVFSLVG 351

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           +V     VE  M +T  +LI K  GG+ GG    L V+  G S             +D+D
Sbjct: 352 NVVRKGIVEVPMGVTVRDLIFKFGGGVEGGRK--LKVVQTGGSAGTFIGPDKLDVPLDFD 409

Query: 307 GLKEMGSGLGTAAVIVMDRS---TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
              + G  LG+  ++V D +    D+  A+ R   F++HESCG+CTPCREGT  ++ ++E
Sbjct: 410 SYAKYGVSLGSGVILVADETHCAVDLALAVMR---FFEHESCGKCTPCREGTRMIVNILE 466

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           R+ +G  +K ++D L E+++N    + C LG +   P+  ++ NF
Sbjct: 467 RISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNF 511


>gi|284009324|emb|CBA76486.1| NADH-quinone oxidoreductase chain F [Arsenophonus nasoniae]
          Length = 404

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 171/388 (44%), Positives = 238/388 (61%), Gaps = 6/388 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 4   DQVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDDSMNIRYLLCNADEMEPGTYKDRLLMEQ 63

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH LIEG +I ++A+ A+  +I++RGE+I   + L+ A++E  A+GLLG N    G++ 
Sbjct: 64  LPHLLIEGMLIGAYALKAYRGYIFLRGEYIEAAKHLRKAIEEAKAAGLLGKNILATGFNF 123

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 124 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 183

Query: 220 ILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           I+  G  WY G   G+  + GTKL   SG VN P   E    IT  E++E + GG+R G 
Sbjct: 184 IIAHGKEWYLGLSEGKSKDAGTKLMGFSGRVNNPGLWELPFGITAREILEDYAGGMREGL 243

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L A  PGG+    L    +  A MD+D + + GS LGTA  + +D   +++     L 
Sbjct: 244 -TLKAWQPGGAGTDFLTEAHLDLA-MDFDSIAKAGSRLGTALAMAVDHKINMVSLTRNLE 301

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W +++++ L +G  Q  +I+ L ++ + +  G+T CA    
Sbjct: 302 QFFARESCGWCTPCRDGLPWSVKILQALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPG 361

Query: 397 AAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           A  P+Q  IK FR   E  I Q +  N 
Sbjct: 362 AVEPLQSAIKYFRAEFEAGISQQNLANL 389


>gi|150021053|ref|YP_001306407.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149793574|gb|ABR31022.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 538

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 171/424 (40%), Positives = 257/424 (60%), Gaps = 10/424 (2%)

Query: 2   LTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           LT + +I T N+  +  K++ + ++   +  + K  +     II E+K SGLRGRGGAGF
Sbjct: 103 LTKEVKIVTRNIGKIDPKNIEEYIANDGYFALAKAFKMKPHEIIEEIKESGLRGRGGAGF 162

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  K  SD+  Y+V NADE EPGT KDR IM  +PH++IE  +IA +A+GA  
Sbjct: 163 PTGLKWEFAFKTQSDQ-KYIVCNADEGEPGTYKDRLIMEGDPHSVIEAMIIAGYAVGATK 221

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+    E+++ A+ + Y  G LG N     ++ D+ V  GAGAYICGEETALL
Sbjct: 222 GYIYIRGEYYGSVENIKKAIKDAYEYGFLGENILNSNFNFDLSVRLGAGAYICGEETALL 281

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EG  G+PRLKPP+P   GL+G PT +NNVE++A VP I+  GA W+  FG EN+ GT
Sbjct: 282 ESIEGNAGRPRLKPPYPPQSGLFGKPTVINNVETLANVPQIILNGAKWFKQFGTENSPGT 341

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F  +G++N    VE  M +T  EL+  H GG+ G  D L  V  GG +   +   +  
Sbjct: 342 KVFCFTGNLNNRGIVELPMGVTVRELL-VHAGGVSG--DKLKMVQTGGIAGTFIDESKF- 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DYD   +    LG+  ++ ++ +  ++     +  F++HESCG+CTPCREGT  ++
Sbjct: 398 DIPLDYDSFAKYSVSLGSGVILGVNNNHCVVDIAKNVMEFFRHESCGKCTPCREGTKMVV 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++++++ K  A K +++ L E++   +   +C LG +   P+  LI NF+   EE +D  
Sbjct: 458 KILDKMSKLEANKEDLERLVEIANTAKETALCGLGQSFPVPLLSLINNFK---EEFLDHI 514

Query: 420 HRCN 423
              N
Sbjct: 515 ENKN 518


>gi|254442515|ref|ZP_05055991.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Verrucomicrobiae bacterium DG1235]
 gi|198256823|gb|EDY81131.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Verrucomicrobiae bacterium DG1235]
          Length = 454

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 182/408 (44%), Positives = 243/408 (59%), Gaps = 20/408 (4%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+   +  G +D + K +      I++EVK S LRGRGGAGF  G+KWSF+ +  S +P 
Sbjct: 23  SIDSYLEHGGYDMLKKAVTMEPQAIMDEVKKSTLRGRGGAGFPCGLKWSFVDRK-SGKPI 81

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV N DESEPGT KDR I+  +PH LIEG +I++FA     +FIY+R E     + L  
Sbjct: 82  YLVCNCDESEPGTFKDRQIVHKDPHQLIEGMMISAFANNVAKSFIYIREEMPHGAKILDQ 141

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FP 196
           A+ E    G +G N    GY  DI+VH GA AYICGEET L+ESLEGK+  PR+KPP FP
Sbjct: 142 AILEAKEKGFVGDNVLGSGYSCDIVVHRGAAAYICGEETGLIESLEGKRANPRIKPPYFP 201

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A +GLY CPT VNNVE++     IL  GA  ++  GR NN GT+++ +SG V  P   E 
Sbjct: 202 AVLGLYNCPTIVNNVETLCNAVHILDMGAEAFTKIGRPNNAGTRIWCVSGGVQRPGYYEV 261

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ---------------MRGA 301
              +T  EL+   CGG   G   + A+IPGGSS+  L  G+               +   
Sbjct: 262 G-EMTLGELVYDICGGPLPG-RTIKAIIPGGSSMKILKNGERYTGKNPDGSEYDWGLEDI 319

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DYDG+   GS  G+  ++V+D +  I  A+  L  FY HESCGQCTPCREG+ W+ ++
Sbjct: 320 PLDYDGIAAAGSMSGSGGMMVLDDTVSIPGALANLMAFYSHESCGQCTPCREGSLWLKKI 379

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             R+V   A+  ++DL+ +V+  I GRTICA G A AWP+Q  I  F 
Sbjct: 380 TSRMVHEQARPEDVDLMLDVAGQIAGRTICAFGFAVAWPVQSYIAKFE 427


>gi|217077616|ref|YP_002335334.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
 gi|217037471|gb|ACJ75993.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
          Length = 537

 Score =  322 bits (825), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 172/417 (41%), Positives = 256/417 (61%), Gaps = 7/417 (1%)

Query: 2   LTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +T + +I T N+  +  K++ + ++   +  + K L    + IINE+K SGLRGRGGAGF
Sbjct: 103 ITKEYKIVTRNIGKIDPKNIDEYIANDGYFALAKALSMKPEEIINEIKESGLRGRGGAGF 162

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  K  +D+  Y+V NADE EPGT KDR IM  +PH++IE  +IA +A+GA  
Sbjct: 163 PTGLKWEFAYKTDADQ-KYIVCNADEGEPGTYKDRLIMEGDPHSVIEAMIIAGYAVGATK 221

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+    E+++ A+++ Y  G LG N    G++ D+ +  GAGAYICGEETALL
Sbjct: 222 GYIYIRGEYYGSIENIKKAINDAYEYGFLGENILNSGFNFDLSIRLGAGAYICGEETALL 281

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EG  G+PRLKPPFP   GL+G PT +NNVE++A VP I+  GA W+   G EN+ GT
Sbjct: 282 ESIEGHAGRPRLKPPFPPQKGLFGKPTVINNVETLANVPQIILNGAEWFKQIGTENSPGT 341

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F  +G++N    VE  M +T  EL+  + GGI GG   L  V  GG +   +   ++ 
Sbjct: 342 KVFCFAGNLNNRGIVELPMGVTVKELL-IYAGGISGG--KLKMVQTGGIAGTFIDESKLD 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DYD   + G  LG+  ++ ++ S  ++     +  F++HESCG+CTPCREGT   +
Sbjct: 399 -VPLDYDSFAKYGVSLGSGVILGVNDSHCVVDIAKNVMEFFRHESCGKCTPCREGTKIAV 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++E++ K  A   +++ L E+S   +   +C LG +   P+  LI NF+   E  I
Sbjct: 458 EILEKMSKFEATMDDLEHLIEISNVAKEAALCGLGQSFPVPLLSLIDNFKEEFEMHI 514


>gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 597

 Score =  322 bits (824), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 170/408 (41%), Positives = 251/408 (61%), Gaps = 6/408 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62
           Q R+     GL   +S+ + ++R  +  + K+L K   + +I+ +KASGLRGRGGAGF T
Sbjct: 115 QTRVTLRNTGLINPESIEEYIARDGYQALGKVLSKYSPEEVISAIKASGLRGRGGAGFPT 174

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW F  +  S  P Y+V NADE +PG   DR I+  +PH+++E   I  +AIGA   F
Sbjct: 175 GLKWEFTARA-SGNPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAICGYAIGAEKGF 233

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    + L+ A+ +C   GLLG N    G++ DI +  GAGA++CGEETALL S
Sbjct: 234 IYVRAEYPLAVQRLETAIGKCLEYGLLGRNIFSTGFNFDIEIRVGAGAFVCGEETALLAS 293

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++G+PR KPPFPA  GL+G PT +NNVE+ A +P I+  G  W+S  G EN++GTK+
Sbjct: 294 IEGRRGEPRPKPPFPAQEGLWGKPTVINNVETWANIPPIILNGPEWFSAIGTENSKGTKV 353

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G +N    VE  M     E+I    GGI  G     AV  GG S  C+PA  +   
Sbjct: 354 FALAGKINNTGLVEVPMGTPLKEIIYDIGGGIPNG-KKFKAVQTGGPSGGCIPAEYLDTP 412

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           + DYD L ++G+ +G+  +I++D  T ++        F + ESCG+C PCR GT  M+ +
Sbjct: 413 V-DYDSLVKLGTIMGSGGMIIVDEDTCMVDLAKFFLEFVQEESCGKCAPCRIGTKRMLEI 471

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           MER+V+G  +  +I+LL E+S+ I+   +C LG  A  P+   +++FR
Sbjct: 472 MERIVEGNGKDGDIELLEELSQGIKSSALCGLGQTAPNPVLSTLRHFR 519


>gi|261820796|ref|YP_003258902.1| NADH dehydrogenase I subunit F [Pectobacterium wasabiae WPP163]
 gi|261604809|gb|ACX87295.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium wasabiae
           WPP163]
          Length = 449

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 173/411 (42%), Positives = 246/411 (59%), Gaps = 7/411 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L D  S+  +    K L    +D +++ VK +GL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 27  LDDYRSKNGYAAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 86

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M  EPH L+EG +I++FA+ A+  +I++RGE+I    +L+ 
Sbjct: 87  YLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRR 146

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 147 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 206

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
           + G++G PT VNNVE++  VP I+  GA+WY G   G+  + GTKL   SG V  P   E
Sbjct: 207 SAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWE 266

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + GS +
Sbjct: 267 LPFGTTAREILEDYAGGMRDGL-KLKAWQPGGAGTDFLTESHLD-LPMDFEHIAKAGSRM 324

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L  G  Q  +I
Sbjct: 325 GTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGEGQPGDI 384

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           + L ++ + +  G T CA    A  P+Q  IK FR   E  I + +  N +
Sbjct: 385 ETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQYLGNLK 435


>gi|227112323|ref|ZP_03825979.1| NADH dehydrogenase I subunit F [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 449

 Score =  319 bits (817), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 169/390 (43%), Positives = 239/390 (61%), Gaps = 6/390 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M 
Sbjct: 48  QDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
            EPH L+EG +I++FA+ A+  +I++RGE+I     L+ A++E  A+GLLG N    G+D
Sbjct: 108 QEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIEEAKAAGLLGKNILGSGFD 167

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP
Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLCNVP 227

Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  GA+WY G   G+  + GTKL   SG V  P   E     T  E++E + GG+R G
Sbjct: 228 AIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A  PGG+    L    +    MD++ + + GS +GTA  + +D   +++     L
Sbjct: 288 L-KLKAWQPGGAGTDFLTESHLD-LPMDFEHIAKAGSRMGTALAMAVDHEINMVSLTRNL 345

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L KG  Q  +I+ L ++ + +  G T CA   
Sbjct: 346 EEFFSRESCGWCTPCRDGLPWSVKILRALEKGEGQPGDIETLEQLCRFLGPGNTFCAHAP 405

Query: 396 AAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            A  P+Q  IK FR   E  I + +  N +
Sbjct: 406 GAVEPLQSAIKYFREEFEAGISKQYLGNVK 435


>gi|53804527|ref|YP_113816.1| NADH dehydrogenase I, F subunit [Methylococcus capsulatus str.
           Bath]
 gi|53758288|gb|AAU92579.1| NADH dehydrogenase I, F subunit [Methylococcus capsulatus str.
           Bath]
          Length = 427

 Score =  318 bits (816), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 172/403 (42%), Positives = 244/403 (60%), Gaps = 6/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGMKWSFMPK-VCSDR 76
           +L++ ++ G ++ + K L +     + + VK SGLRGRGGAGF TG+KWSF+P    + R
Sbjct: 17  TLAEYLASGGYEGLKKTLAEFAPLDVQQRVKDSGLRGRGGAGFPTGLKWSFVPMGEGAPR 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YLVVN DE EPG  KDR ++  +PH LIEG VIA++AI A+ A++++RGE+      L
Sbjct: 77  TKYLVVNGDEMEPGAFKDRLLLEGDPHQLIEGVVIAAYAIQANIAYVFLRGEYRLAAARL 136

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ E  A GLLG +    G+ +D+ +H  AG YICGEETALL SLEGK+  PR KPPF
Sbjct: 137 RQAIAEAEAQGLLGEDILGSGFSLDLRLHTSAGRYICGEETALLNSLEGKRANPRAKPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P   GL+G PT VNNVE++  +P ILR G  WY G  R    GTK++ +SG V  P   E
Sbjct: 197 PQVSGLFGKPTIVNNVETLCNLPHILRNGVEWYKGLSRTGEPGTKIYGVSGRVRSPGAWE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  E+IE+H GG+R G+  L   +PGG+S   L    +    MDY  + + GS L
Sbjct: 257 LPMGTTAREIIEEHAGGMRDGY-RLKGYLPGGASTDFLLPEHLD-IPMDYGSIGKAGSRL 314

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  +I++D  T  ++ +  L  F+  ESCG CTPCR+G  W + ++E L++G  +  ++
Sbjct: 315 GTGTMILLDDKTCPVQMVLNLERFFAQESCGWCTPCRDGLPWTVSLLEGLIEGRGRPEDL 374

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + L  +   +  G T CAL   A  P+Q  +K+FR   E  + 
Sbjct: 375 ETLERLCGLLGPGNTFCALAPGAMEPLQSALKHFRADFERYLQ 417


>gi|7709907|gb|AAB29698.2| NADH:ubiquinone oxidoreductase flavoprotein 1 subunit [Homo
           sapiens]
          Length = 257

 Score =  318 bits (816), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 169/297 (56%), Positives = 202/297 (68%), Gaps = 41/297 (13%)

Query: 54  GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113
           GRGGAGF TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++  
Sbjct: 1   GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGG 60

Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYIC 172
            A+ A  A+IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYIC
Sbjct: 61  RAMAARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYIC 120

Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232
           GEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFG
Sbjct: 121 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFG 180

Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
           RE N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH G  R          PG S    
Sbjct: 181 RERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGTDR----------PGHS---- 226

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              G   G +   DG +                     KAI RL  FYKH SCGQCT
Sbjct: 227 --CGDRHGPL---DGHR---------------------KAIARLIEFYKHASCGQCT 257


>gi|320161184|ref|YP_004174408.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1]
 gi|319995037|dbj|BAJ63808.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1]
          Length = 548

 Score =  318 bits (815), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 172/418 (41%), Positives = 257/418 (61%), Gaps = 6/418 (1%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAG 59
           L  + RI     G +   ++ D +    +  + K+L   + + +I EV+ SGL+GRGGAG
Sbjct: 113 LPAEQRIVLERAGVIDPANIEDYILHDGYAALGKVLTSMKPEEVIAEVQKSGLKGRGGAG 172

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWSF+ K    +  Y++ NADESEPGT KDR I+  +PH ++E   IA +A+GA 
Sbjct: 173 FPTGLKWSFVAKAPGTK-KYVICNADESEPGTFKDRVILEGDPHAILEAMAIAGYAVGAD 231

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVRGE+   +E L  A+ +    G LG N     ++ +I VH GAGAYICGEETAL
Sbjct: 232 EGYIYVRGEYALAQERLAIAIAQAKEYGFLGKNIFGTEFNFEIHVHSGAGAYICGEETAL 291

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ES+EGK+G+PR +PP+P   GL+G PT VNNVE++A +P ILR GA WY  FG  ++ G
Sbjct: 292 IESIEGKRGEPRARPPYPTTHGLWGKPTLVNNVETLANIPPILRNGAEWYRKFGTPSSPG 351

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+++I G+VN    +E  M IT  E+I  +  G++ G    LA   GGSS   +PA  +
Sbjct: 352 TKVYTILGNVNNTGLIEVPMGITLREVIAIYGRGMKNGRTFKLAQT-GGSSGSVIPA-SL 409

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
           +   MD++   + G  LG+ A+++ D  T ++     L  F++ ESCG+CTPCR GT   
Sbjct: 410 QDTPMDFESYNKAGVSLGSGALLICDEDTCVVDLAKVLMNFFRRESCGKCTPCRIGTYRA 469

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++++R+ +G    +++D L  +S+N+   + C LG  AA PI+ ++K FR  +E  I
Sbjct: 470 YQILQRISEGQGVLKDLDELLSLSENLVNLSNCGLGQTAATPIKDILKYFRAEVEAHI 527


>gi|157364371|ref|YP_001471138.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314975|gb|ABV34074.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 541

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 162/403 (40%), Positives = 254/403 (63%), Gaps = 5/403 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+  +  K++ + ++R  +  + ++L++ + + +I+ VK SGLRGRGGAGF TG+KW
Sbjct: 113 VLRNVGLIDPKNIDEYIARDGYFALHRVLKEMKPNQVIDWVKESGLRGRGGAGFPTGLKW 172

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               KV +D+  Y+V NADE EPGT KDR IM  +PH++IE  VI  +A+GA   +IY+R
Sbjct: 173 DLTAKVQADQ-KYVVCNADEGEPGTFKDRLIMEGDPHSVIEAMVICGYAVGATKGYIYIR 231

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+    E++Q A+ + Y  G LG +    G+D D++V  GAGAYICGEETALLES+EGK
Sbjct: 232 GEYYGSVENIQKAIKDAYEYGFLGKDIMGSGFDFDLVVRLGAGAYICGEETALLESIEGK 291

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PRLKPP+P   GL+G PT +NNVE+ A +P I++    W+  FG  ++ GTK+FS+ 
Sbjct: 292 SGRPRLKPPYPPTNGLFGKPTVINNVETFANIPPIIQNDPGWFKSFGTPSSPGTKVFSLV 351

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G+V     VE  M +T  +LI +  GG+ GG   L  V  GG++   +   ++  A +DY
Sbjct: 352 GNVVRRGIVEVPMGVTVRDLIYRFGGGLVGG-KQLYMVQTGGTAGTFVGVDKLDVA-LDY 409

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D  K  G  +G+  ++ M   T  +       +F++HESCG+CTPCREGT   ++++ER+
Sbjct: 410 DSFKNHGVSIGSGVILAMSEDTCPVDVALNTMMFFEHESCGKCTPCREGTRLSVQILERM 469

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            KG  ++ +++ L +++   +  ++C LG +   P+  ++ NF
Sbjct: 470 SKGQGKEEDLETLRKIAIITQEASLCGLGQSINVPLLSILNNF 512


>gi|238920563|ref|YP_002934078.1| NADH dehydrogenase I subunit F [Edwardsiella ictaluri 93-146]
 gi|238870132|gb|ACR69843.1| NADH oxidoreductase [Edwardsiella ictaluri 93-146]
          Length = 448

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/381 (44%), Positives = 234/381 (61%), Gaps = 6/381 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M 
Sbjct: 47  QDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNVRYLLCNADEMEPGTYKDRLLME 106

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH L+EG +I ++A+ A+  +I++RGE++R  E+L+ A+DE  A+GLLG N    G+D
Sbjct: 107 QLPHLLVEGMLIGAYALKAYRGYIFLRGEYVRAAENLRRAIDEARAAGLLGKNIFGSGFD 166

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP
Sbjct: 167 FDLFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPASAGVWGKPTCVNNVETLCNVP 226

Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  G +WY G   G+  + GTKL   SG V  P   E     T  E++E + GG+R G
Sbjct: 227 AIIEHGVAWYQGLSAGKSQDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 286

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A  PGG+    L    +    MD+  + + GS LGTA  + +D   +++  +  L
Sbjct: 287 L-KLKAWQPGGAGTDFLTEAHL-DLPMDFASIGKAGSRLGTALAMAVDHEINMVSLLCNL 344

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G T CA   
Sbjct: 345 ESFFARESCGWCTPCRDGLPWGLKILRALERGEGQPGDIETLEQLCRLLAPGHTFCAHAP 404

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            A  P+Q  IK FR   E  I
Sbjct: 405 GAVEPLQSAIKYFRGEFEAGI 425


>gi|260598701|ref|YP_003211272.1| NADH dehydrogenase I subunit F [Cronobacter turicensis z3032]
 gi|260217878|emb|CBA32426.1| NADH-quinone oxidoreductase subunit F [Cronobacter turicensis
           z3032]
          Length = 445

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/402 (42%), Positives = 239/402 (59%), Gaps = 5/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  ++   K L     D I+N VK +GL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 26  LEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 85

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   E L+ 
Sbjct: 86  YLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRR 145

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 146 AIAEATEAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + G++G PT VNNVE++  VP IL  G  WY G     ++GTKL   SG V  P   E  
Sbjct: 206 SSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGVWELP 265

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E++E++ GG+R G     A  PGG+    L    +    M++  + + GS LGT
Sbjct: 266 FGTTAREILEEYAGGMRDGL-TFKAWQPGGAGTDFLTDAHL-DLPMEFASIGKAGSRLGT 323

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ 
Sbjct: 324 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIET 383

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 384 LEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQ 425


>gi|297267279|ref|XP_002799509.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like [Macaca mulatta]
          Length = 335

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 148/217 (68%), Positives = 174/217 (80%)

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           G PTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+  
Sbjct: 108 GRPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPL 167

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            ELIEKH GG+ GGWDNLLAVIPGGSS P +P       +MD+D L +  +GLGTAAVIV
Sbjct: 168 KELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIV 227

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           MDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +VM R V+G AQ  EID L+E+S
Sbjct: 228 MDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEIS 287

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           K IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 288 KQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 324



 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLV-VNADESEPGTCK 93
           TG+KWSFM K    RP  +  V      P  C+
Sbjct: 95  TGLKWSFMNKPSDGRPTTVANVETVAVSPTICR 127


>gi|156933126|ref|YP_001437042.1| NADH dehydrogenase I subunit F [Cronobacter sakazakii ATCC BAA-894]
 gi|156531380|gb|ABU76206.1| hypothetical protein ESA_00936 [Cronobacter sakazakii ATCC BAA-894]
          Length = 445

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/380 (43%), Positives = 231/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRMLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I   E L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNILGSGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY G     ++GTKL   SG V  P   E     T  E++E++ GG+R G   
Sbjct: 228 ILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGVWELPFGTTAREILEEYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M++  + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTDAHL-DLPMEFASIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFRDEFEAGIKQ 425


>gi|239616592|ref|YP_002939914.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
 gi|239505423|gb|ACR78910.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
          Length = 539

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/418 (40%), Positives = 253/418 (60%), Gaps = 7/418 (1%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +T ++RI     G +  K++ + ++   +  + K L+   + +I EVK SGLRGRGGAGF
Sbjct: 106 ITKEERIVLKRAGEINPKNIDEYIAFDGYQGLAKALQMSPEDVIKEVKESGLRGRGGAGF 165

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW F  KV + +  Y++ NADE EPGT KDR IM  +PH++IEG  I ++A+GA+ 
Sbjct: 166 PAGLKWEFTYKVDA-KEKYVICNADEGEPGTFKDRLIMEGDPHSVIEGMAITAYAVGANK 224

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IY+RGE+     +L+ A+ + Y  GLLG N  LG  +  D+ V  GAGAY+CGEETAL
Sbjct: 225 GYIYIRGEYFESVNNLRIAISQAYDYGLLGENI-LGTNFSFDLSVRLGAGAYVCGEETAL 283

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ES+EG  G+PRLKPP+P   GLY  PT VNNVE+ A VP I+  GA W+   G E++ G
Sbjct: 284 IESIEGHAGRPRLKPPYPPVKGLYQKPTVVNNVETFANVPWIVLNGAEWFRSIGTESSPG 343

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK++S+ G++      E  M  T  ELI KH GGI  G  NL  V  GG++   +   ++
Sbjct: 344 TKVYSLCGNLVRRGITEVPMGTTVAELIYKHGGGIANGR-NLKMVQTGGAAGTFIKPDEI 402

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D++  ++ G  LG+  ++ +D +   +     L  F+ HESCG+C+PCREGT  +
Sbjct: 403 NTP-LDFNSFRDYGVALGSGVILAVDDTHCAVDVALNLMEFFAHESCGKCSPCREGTKLI 461

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + +++ + KG   K  I  LY++++ ++    C LG +   P++ L+  FR  IE  I
Sbjct: 462 VNILKEISKGRGTKEMIGQLYDIAETMQNSAFCGLGQSVPVPLRSLLDRFRDEIEAHI 519


>gi|50121947|ref|YP_051114.1| NADH dehydrogenase I subunit F [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612473|emb|CAG75923.1| NADH-quinone oxidoreductase chain F [Pectobacterium atrosepticum
           SCRI1043]
          Length = 449

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/390 (43%), Positives = 237/390 (60%), Gaps = 6/390 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M 
Sbjct: 48  QDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
            EPH L+EG +I++FA+ A+  +I++RGE+I     L+ A++E  A+GLLG N    G+D
Sbjct: 108 QEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIEEAKAAGLLGKNILGSGFD 167

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G +G PT VNNVE++  VP
Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAWGKPTCVNNVETLCNVP 227

Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  GA+WY G   G+  + GTKL   SG V  P   E     T  E++E + GG+R G
Sbjct: 228 AIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A  PGG+    L    +    MD++ + + GS +GTA  + +D   +++     L
Sbjct: 288 L-KLKAWQPGGAGTDFLTESHLD-LPMDFEHIAKAGSRMGTALAMAVDHEINMVSLTRNL 345

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L  G  Q  +I+ L ++ + +  G T CA   
Sbjct: 346 EEFFSRESCGWCTPCRDGLPWSVKILRALENGEGQPGDIETLEQLCRFLGPGNTFCAHAP 405

Query: 396 AAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            A  P+Q  IK FR   E  I + +  N +
Sbjct: 406 GAVEPLQSAIKYFREEFEAGISKQYLGNLK 435


>gi|253689144|ref|YP_003018334.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755722|gb|ACT13798.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 449

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/390 (43%), Positives = 238/390 (61%), Gaps = 6/390 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M 
Sbjct: 48  QDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
            EPH L+EG +I++FA+ A+  +I++RGE+I     L+ A++E  A+GLLG N    G+D
Sbjct: 108 QEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIEEAKAAGLLGKNILGSGFD 167

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP
Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLCNVP 227

Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  GA+WY G   G+  + GTKL   SG V  P   E     T  E++E + GG+R G
Sbjct: 228 AIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A  PGG+    L    +    MD++ + + GS +GTA  + +D   +++     L
Sbjct: 288 L-KLKAWQPGGAGTDFLTENHLD-LPMDFEHIAKAGSRMGTALAMAVDHEINMVSLTRNL 345

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L  G  Q  +I+ L ++ + +  G T CA   
Sbjct: 346 EEFFARESCGWCTPCRDGLPWSVKILRALENGEGQPGDIETLEQLCRFLGPGNTFCAHAP 405

Query: 396 AAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            A  P+Q  IK FR   E  I + +  N +
Sbjct: 406 GAVEPLQSAIKYFREEFEAGISKQYLGNVK 435


>gi|431020|gb|AAA03537.1| NADH dehydrogenase [Escherichia coli]
          Length = 445

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 166/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G +G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++ RL +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRRLERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|397903|emb|CAA48365.1| NADH dehydrogenase I, subunit nuoF [Escherichia coli]
          Length = 445

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 166/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G +G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++ RL +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRRLERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|283786352|ref|YP_003366217.1| NADH-quinone oxidoreductase subunit F [Citrobacter rodentium
           ICC168]
 gi|282949806|emb|CBG89429.1| NADH-quinone oxidoreductase subunit F [Citrobacter rodentium
           ICC168]
          Length = 445

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/402 (42%), Positives = 238/402 (59%), Gaps = 5/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  ++   K L     D I+N+VK SGL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 26  LDEYRSKNGYEGARKALTALSPDEIVNQVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIR 85

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   E+L+ 
Sbjct: 86  YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAENLRR 145

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 146 AIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P   E  
Sbjct: 206 TSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELP 265

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS LGT
Sbjct: 266 FGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGT 323

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ 
Sbjct: 324 ALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIET 383

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 384 LEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIRQ 425


>gi|77164632|ref|YP_343157.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus oceani ATCC
           19707]
 gi|254434237|ref|ZP_05047745.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani
           AFC27]
 gi|76882946|gb|ABA57627.1| NADH dehydrogenase subunit F [Nitrosococcus oceani ATCC 19707]
 gi|207090570|gb|EDZ67841.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani
           AFC27]
          Length = 429

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/387 (42%), Positives = 238/387 (61%), Gaps = 8/387 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           ++ EVK S LRGRGGAGF TG+KWSF+P+   + RP YL+ NADE EPGT KDR +M  +
Sbjct: 47  VLQEVKESNLRGRGGAGFPTGLKWSFVPRGDDAPRPKYLIANADEMEPGTFKDRLLMEGD 106

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDV 159
           PH L+EG ++AS+AI A  A+I++R E+    + L+ A+ E Y    LG N  LG  + +
Sbjct: 107 PHQLLEGMILASYAIQAEVAYIFLRAEYWLAAQRLKKAIAEAYQVNYLGKNL-LGSTFSL 165

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ +H  AG YICGEETALL +LEGK+  PR KPP+P   GL+G PT VNNVE++  VP 
Sbjct: 166 ELHLHTSAGRYICGEETALLNALEGKRAIPRAKPPYPQVSGLWGQPTVVNNVETLCNVPH 225

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ RGA+WY    R  + GTK++  SG V +P   E  M     E++E+H GG++ G+  
Sbjct: 226 IIARGAAWYQNLSRSEDGGTKIYGASGRVKHPGAWELPMGTPIREILEEHAGGMKDGF-Q 284

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L   +PGG+S   L    +    MDYD ++  GS LGT ++I++D  T  +  +  L  F
Sbjct: 285 LRGFLPGGASTDFLTEEHLE-VPMDYDSVQAAGSRLGTGSLIILDDRTCPVDMVRNLEHF 343

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W+ +++  + +G  Q  +++ L   ++ +  G T CA    A 
Sbjct: 344 FAQESCGWCTPCRDGLPWVEKILLGIEQGQGQPEDLEYLMMHTRLLGPGHTFCAHAPGAM 403

Query: 399 WPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            P+Q  +K F+   E+ I Q  RC F+
Sbjct: 404 EPLQSALKYFKTDFEQHIHQ-QRCPFK 429


>gi|296103965|ref|YP_003614111.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058424|gb|ADF63162.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295098077|emb|CBK87167.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 445

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 167/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N VK SGL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DDIVNAVKESGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I   E+L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAENLRRAIAEATEAGLLGKNILGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY G     + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQGISSSKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  + +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRAIERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFRDEFEAGIKQ 425


>gi|317492619|ref|ZP_07951046.1| NADH oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919369|gb|EFV40701.1| NADH oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 453

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 171/402 (42%), Positives = 243/402 (60%), Gaps = 7/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +   +K L+   +D ++N VK +GL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 31  LDEYRSKSGYQGAEKALKGMAQDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 90

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +IA+FA+ ++  +I++RGE++    +L+ 
Sbjct: 91  YLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIAAFALKSYRGYIFLRGEYVEAAVNLRK 150

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 151 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 210

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
           + G++G PT VNNVE++  VP I+  G  WY G   G+  + GTKL   SG V  P   E
Sbjct: 211 SSGVWGKPTCVNNVETLCNVPAIIEHGVDWYKGLSAGKSEDAGTKLMGFSGRVKNPGLWE 270

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E + GG+R G   L A  PGG+    L  G      MD+  + + GS L
Sbjct: 271 LPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFL-TGDHLDLPMDFASIGKAGSRL 328

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  +I
Sbjct: 329 GTALAMAVDNEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDI 388

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + L ++ +++  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 389 ETLEQLCRHLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 430


>gi|328952777|ref|YP_004370111.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453101|gb|AEB08930.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 614

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 172/412 (41%), Positives = 242/412 (58%), Gaps = 8/412 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+  +  + + D +++G +  + + L     + I+ EVKASGLRGRGGAGF TG+KW
Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255

Query: 67  SFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           SF   +  D P  Y++ N DE EPGT KDR I+  +PH L+EG  IA FA+GA   +IY 
Sbjct: 256 SFTRPL--DVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYC 313

Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGE+   +  L  A+ +  A G LG N    G+  DI V  G G YICGEETAL+ES+EG
Sbjct: 314 RGEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEG 373

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+G PR KPPFP   GL+  PT VNNVE++A +P I+ RG  WY   G  +  GTK++ I
Sbjct: 374 KRGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQI 433

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
            GHV  P  VE    IT  ELI+ + GG+R G    +    G S+    P  +     +D
Sbjct: 434 IGHVRTPQIVEVPAGITLRELIDTYGGGMRDGGKFKMCQTGGASAGIVGP--EALDVPVD 491

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           + G+ ++G  LG+  ++VMD S   +     ++VF+ HESCGQCTPCREGT  +++ + R
Sbjct: 492 F-GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTR 550

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + +G  Q  ++D L  + K +   + C LG  A  P+  L+K FR   E+ I
Sbjct: 551 IWEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602


>gi|328952783|ref|YP_004370117.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453107|gb|AEB08936.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 613

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 172/412 (41%), Positives = 242/412 (58%), Gaps = 8/412 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+  +  + + D +++G +  + + L     + I+ EVKASGLRGRGGAGF TG+KW
Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255

Query: 67  SFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           SF   +  D P  Y++ N DE EPGT KDR I+  +PH L+EG  IA FA+GA   +IY 
Sbjct: 256 SFTRPL--DVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYC 313

Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGE+   +  L  A+ +  A G LG N    G+  DI V  G G YICGEETAL+ES+EG
Sbjct: 314 RGEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEG 373

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+G PR KPPFP   GL+  PT VNNVE++A +P I+ RG  WY   G  +  GTK++ I
Sbjct: 374 KRGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQI 433

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
            GHV  P  VE    IT  ELI+ + GG+R G    +    G S+    P  +     +D
Sbjct: 434 IGHVRTPQIVEVPAGITLRELIDTYGGGMRDGGKFKMCQTGGASAGIVGP--EALDVPVD 491

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           + G+ ++G  LG+  ++VMD S   +     ++VF+ HESCGQCTPCREGT  +++ + R
Sbjct: 492 F-GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTR 550

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + +G  Q  ++D L  + K +   + C LG  A  P+  L+K FR   E+ I
Sbjct: 551 IWEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602


>gi|261340672|ref|ZP_05968530.1| NADH oxidoreductase, F subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288317086|gb|EFC56024.1| NADH oxidoreductase, F subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 445

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 167/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I   E+L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAENLRRAIAEATEAGLLGKNILGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY G     + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQGISSSKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|269139726|ref|YP_003296427.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Edwardsiella tarda EIB202]
 gi|267985387|gb|ACY85216.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Edwardsiella tarda EIB202]
 gi|304559593|gb|ADM42257.1| NADH-ubiquinone oxidoreductase chain F [Edwardsiella tarda FL6-60]
          Length = 448

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 168/381 (44%), Positives = 233/381 (61%), Gaps = 6/381 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M 
Sbjct: 47  QDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNVRYLLCNADEMEPGTYKDRLLME 106

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH L+EG +I ++A+ A+  +I++RGE++   E+L+ A+DE  A+GLLG N    G+D
Sbjct: 107 QLPHLLVEGMLIGAYALKAYRGYIFLRGEYVTAAENLRRAIDEARAAGLLGKNIFGSGFD 166

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G +G PT VNNVE++  VP
Sbjct: 167 FDLFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPASAGAWGKPTCVNNVETLCNVP 226

Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  GA+WY G   G+  + GTKL   SG V  P   E     T  E++E + GG+R G
Sbjct: 227 AIVEHGAAWYQGLSAGKSQDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 286

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A  PGG+    L    +    MD+  + + GS LGTA  + +D   +++  +  L
Sbjct: 287 L-KLKAWQPGGAGTDFLTEAHL-DLPMDFASIGKAGSRLGTALAMAVDHEINMVSLLCNL 344

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G T CA   
Sbjct: 345 ESFFARESCGWCTPCRDGLPWGLKILRALERGEGQPGDIETLEQLCRLLAPGHTFCAHAP 404

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            A  P+Q  IK FR   E  I
Sbjct: 405 GAVEPLQSAIKYFRDEFEAGI 425


>gi|328952766|ref|YP_004370100.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453090|gb|AEB08919.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 614

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 172/412 (41%), Positives = 242/412 (58%), Gaps = 8/412 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+  +  + + D +++G +  + + L     + I+ EVKASGLRGRGGAGF TG+KW
Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255

Query: 67  SFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           SF   +  D P  Y++ N DE EPGT KDR I+  +PH L+EG  IA FA+GA   +IY 
Sbjct: 256 SFTRPL--DVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYC 313

Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGE+   +  L  A+ +  A G LG N    G+  DI V  G G YICGEETAL+ES+EG
Sbjct: 314 RGEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEG 373

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+G PR KPPFP   GL+  PT VNNVE++A +P I+ RG  WY   G  +  GTK++ I
Sbjct: 374 KRGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQI 433

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
            GHV  P  VE    IT  ELI+ + GG+R G    +    G S+    P  +     +D
Sbjct: 434 IGHVRTPQIVEVPAGITLRELIDTYGGGMRDGGKFKMCQTGGASAGIVGP--EALDVPVD 491

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           + G+ ++G  LG+  ++VMD S   +     ++VF+ HESCGQCTPCREGT  +++ + R
Sbjct: 492 F-GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTR 550

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + +G  Q  ++D L  + K +   + C LG  A  P+  L+K FR   E+ I
Sbjct: 551 IWEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602


>gi|238784996|ref|ZP_04628994.1| NADH-quinone oxidoreductase subunit F [Yersinia bercovieri ATCC
           43970]
 gi|238714112|gb|EEQ06126.1| NADH-quinone oxidoreductase subunit F [Yersinia bercovieri ATCC
           43970]
          Length = 439

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 169/378 (44%), Positives = 233/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++N VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 41  VVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D ++
Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGSGFDFEL 160

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    IT  E++E + GG+R G   
Sbjct: 221 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 279

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 338

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 399 EPLQSAIKYFREEFEAGI 416


>gi|270262810|ref|ZP_06191081.1| NADH-quinone oxidoreductase subunit F [Serratia odorifera 4Rx13]
 gi|270043494|gb|EFA16587.1| NADH-quinone oxidoreductase subunit F [Serratia odorifera 4Rx13]
          Length = 450

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 234/387 (60%), Gaps = 6/387 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 49  DEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 108

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 109 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDF 168

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP 
Sbjct: 169 ELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 228

Query: 220 ILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           IL  G  WY G   G+  + GTKL   SG V  P   E    IT  E++E + GG+R G 
Sbjct: 229 ILANGIEWYQGINGGKSKDAGTKLMGFSGRVKNPGVWELPFGITAREILEDYAGGMRDGL 288

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L 
Sbjct: 289 -RFKAWQPGGAGTDFLTADHLD-LPMDFESIGKAGSRLGTALAMAVDHEIGMVPLVRNLE 346

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L  G  Q  +I+ L ++ +++  G+T CA    
Sbjct: 347 EFFARESCGWCTPCRDGLPWSVKILRALENGEGQPGDIETLEQLCRSLGPGKTFCAHAPG 406

Query: 397 AAWPIQGLIKNFRPLIEERIDQYHRCN 423
           A  P+Q  IK FR   E  I   H  N
Sbjct: 407 AVEPLQSAIKYFREEFEAGIAVKHFSN 433


>gi|146419677|ref|XP_001485799.1| hypothetical protein PGUG_01470 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 314

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 183/249 (73%), Gaps = 4/249 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +IL+KG  WII+EVK SGLRGRGGAGF 
Sbjct: 63  LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEILQKGDKWIIDEVKKSGLRGRGGAGFP 122

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++   A+ A
Sbjct: 123 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLVTGRAMNA 182

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GLLG N+   GYD D+ +H G GAY+CGEETA
Sbjct: 183 TAAYIYIRGEFYNEANILQGAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYVCGEETA 242

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG  W++ FGRE N 
Sbjct: 243 LIESLEGKAGKPRLKPPFPAAVGLFGRPSTVTNVETVAVAPTICRRGGEWFASFGRERNS 302

Query: 238 GTKLFSISG 246
           GTKLF ISG
Sbjct: 303 GTKLFCISG 311


>gi|322831988|ref|YP_004212015.1| NADH-quinone oxidoreductase, F subunit [Rahnella sp. Y9602]
 gi|321167189|gb|ADW72888.1| NADH-quinone oxidoreductase, F subunit [Rahnella sp. Y9602]
          Length = 453

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 169/385 (43%), Positives = 233/385 (60%), Gaps = 6/385 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+N VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 54  IVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQMP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ ++  +I++RGE+I    +L+ A+ E   +GLLG N    G+D ++
Sbjct: 114 HLLVEGMLISAFALKSYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNILGTGFDFEL 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G +G PT VNNVE++  VP IL
Sbjct: 174 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAWGKPTCVNNVETLCNVPAIL 233

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+  + GTKL   SG V  P   E     T  E++E++ GG+R G   
Sbjct: 234 EHGVDWYKGISAGKSEDAGTKLMGFSGRVKNPGVWELPFGTTAREILEEYAGGMRDGL-K 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD+  + + GS LGTA  + +D    ++  +  L  F
Sbjct: 293 FKAWQPGGAGTDFLTADHL-DLPMDFASIGKAGSRLGTALAMAVDNEIGMVPLVRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 352 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRQLGPGKTFCAHAPGAV 411

Query: 399 WPIQGLIKNFRPLIEERIDQYHRCN 423
            P+Q  IK FR   E  I + H  N
Sbjct: 412 EPLQSAIKYFREEFEAGIAKQHYNN 436


>gi|307297602|ref|ZP_07577408.1| NADH dehydrogenase (quinone) [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916862|gb|EFN47244.1| NADH dehydrogenase (quinone) [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 540

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 165/404 (40%), Positives = 246/404 (60%), Gaps = 6/404 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N   +  ++L + ++   +  + K L    + +I E+K S LRGRGGAGF TG+KW 
Sbjct: 114 VLRNAGSIDPRNLEEYIALDGYQGLAKALRMTPEEVIEELKKSNLRGRGGAGFPTGLKWE 173

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F  KV SD   +++ NADE EPGT KDR IM  +PH++IEG VIA +A+GA   +IY+RG
Sbjct: 174 FTQKVRSDE-KFVICNADEGEPGTFKDRLIMEGDPHSVIEGMVIAGYAVGASKGYIYIRG 232

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGK 185
           E+     SL+ A+ + Y  GLLG  S LG  +  D+ V  GAGAY+CGEETAL+ES+EGK
Sbjct: 233 EYFESVSSLRDAISKAYEYGLLG-QSVLGTEFSFDLSVRLGAGAYVCGEETALIESIEGK 291

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PRLKPP+P   GLYG PT VNNVE+ A VP I+ +GA W+   G +++ GTK+FS+ 
Sbjct: 292 SGRPRLKPPYPPVSGLYGKPTVVNNVETFACVPPIIDKGAGWFRSIGTQSSPGTKVFSLC 351

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G +     VE  M  +  +L+ K  GGI  G   L  V  GG++   +   +M  A +D+
Sbjct: 352 GDLVKRGIVEVPMGTSVRDLVHKFGGGIPKGR-TLKMVQTGGAAGTFIKPEEMD-AELDF 409

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D  K+ G+ LG+  ++ +D +   +     L  F+ HESCG+C+PCREGT  ++ +++  
Sbjct: 410 DSFKKSGASLGSGVILAIDETHCAVDIAKNLMEFFAHESCGKCSPCREGTRVIVYILDEF 469

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            KG       + LY++S+ +E  + C LG +   P++ ++  F+
Sbjct: 470 SKGRGTVEMFNQLYDISETMEESSFCGLGQSVPIPLRSILDRFK 513


>gi|190345480|gb|EDK37372.2| hypothetical protein PGUG_01470 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 314

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 150/249 (60%), Positives = 183/249 (73%), Gaps = 4/249 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +IL+KG  WII+EVK SGLRGRGGAGF 
Sbjct: 63  LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEILQKGDKWIIDEVKKSGLRGRGGAGFP 122

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++   A+ A
Sbjct: 123 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLVTGRAMNA 182

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GLLG N+   GYD D+ +H G GAY+CGEETA
Sbjct: 183 TAAYIYIRGEFYNEANILQGAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYVCGEETA 242

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG  W++ FGRE N 
Sbjct: 243 LIESLEGKAGKPRLKPPFPAAVGLFGRPSTVTNVETVAVAPTICRRGGEWFASFGRERNS 302

Query: 238 GTKLFSISG 246
           GTKLF ISG
Sbjct: 303 GTKLFCISG 311


>gi|328952781|ref|YP_004370115.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453105|gb|AEB08934.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 613

 Score =  315 bits (808), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 170/411 (41%), Positives = 241/411 (58%), Gaps = 6/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+  +  + + D +++G +  + + L     + I+ EVKASGLRGRGGAGF TG+KW
Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF   +   +  Y++ N DE EPGT KDR I+  +PH L+EG  IA FA+GA   +IY R
Sbjct: 256 SFTRPLQVPQ-KYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYCR 314

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+   +  L  A+ +  A G LG N    G+  DI V  G G YICGEETAL+ES+EGK
Sbjct: 315 GEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEGK 374

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR KPPFP   GL+  PT VNNVE++A +P I+ RG  WY   G  +  GTK++ I 
Sbjct: 375 RGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQII 434

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P  VE    IT  ELI+ + GG+R G    +    G S+    P  +     +D+
Sbjct: 435 GHVRTPQIVEVPAGITLRELIDTYGGGMRDGGKFKMCQTGGASAGIVGP--EALDVPVDF 492

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
            G+ ++G  LG+  ++VMD S   +     ++VF+ HESCGQCTPCREGT  +++ + R+
Sbjct: 493 -GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTRI 551

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +G  Q  ++D L  + K +   + C LG  A  P+  L+K FR   E+ I
Sbjct: 552 WEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602


>gi|300948572|ref|ZP_07162665.1| NADH oxidoreductase, F subunit [Escherichia coli MS 116-1]
 gi|300451920|gb|EFK15540.1| NADH oxidoreductase, F subunit [Escherichia coli MS 116-1]
          Length = 445

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 166/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I+SFA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISSFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G +G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|26248671|ref|NP_754711.1| NADH dehydrogenase I subunit F [Escherichia coli CFT073]
 gi|91211576|ref|YP_541562.1| NADH dehydrogenase I subunit F [Escherichia coli UTI89]
 gi|117624473|ref|YP_853386.1| NADH dehydrogenase I subunit F [Escherichia coli APEC O1]
 gi|170767289|ref|ZP_02901742.1| NADH-quinone oxidoreductase, F subunit [Escherichia albertii
           TW07627]
 gi|215487497|ref|YP_002329928.1| NADH dehydrogenase I subunit F [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559197|ref|YP_002392110.1| NADH dehydrogenase I subunit F [Escherichia coli S88]
 gi|218690444|ref|YP_002398656.1| NADH dehydrogenase I subunit F [Escherichia coli ED1a]
 gi|227887340|ref|ZP_04005145.1| NADH dehydrogenase I subunit F [Escherichia coli 83972]
 gi|237704758|ref|ZP_04535239.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|300983379|ref|ZP_07176563.1| NADH oxidoreductase, F subunit [Escherichia coli MS 45-1]
 gi|301049037|ref|ZP_07196022.1| NADH oxidoreductase, F subunit [Escherichia coli MS 185-1]
 gi|306814605|ref|ZP_07448767.1| NADH dehydrogenase I subunit F [Escherichia coli NC101]
 gi|312967582|ref|ZP_07781797.1| NADH oxidoreductase, F subunit [Escherichia coli 2362-75]
 gi|331647939|ref|ZP_08349031.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M605]
 gi|26109076|gb|AAN81279.1|AE016763_238 NADH dehydrogenase I chain F [Escherichia coli CFT073]
 gi|91073150|gb|ABE08031.1| NADH dehydrogenase I chain F [Escherichia coli UTI89]
 gi|115513597|gb|ABJ01672.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli APEC O1]
 gi|170123623|gb|EDS92554.1| NADH-quinone oxidoreductase, F subunit [Escherichia albertii
           TW07627]
 gi|215265569|emb|CAS09972.1| NADH: ubiquinone oxidoreductase, chain F [Escherichia coli O127:H6
           str. E2348/69]
 gi|218365966|emb|CAR03710.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli S88]
 gi|218428008|emb|CAR08929.2| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli ED1a]
 gi|222034040|emb|CAP76781.1| NadH-quinone oxidoreductase subunit F [Escherichia coli LF82]
 gi|226901124|gb|EEH87383.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|227835690|gb|EEJ46156.1| NADH dehydrogenase I subunit F [Escherichia coli 83972]
 gi|281179371|dbj|BAI55701.1| NADH dehydrogenase I chain F [Escherichia coli SE15]
 gi|284922272|emb|CBG35357.1| NADH-quinone oxidoreductase subunit F [Escherichia coli 042]
 gi|294492366|gb|ADE91122.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli IHE3034]
 gi|300299146|gb|EFJ55531.1| NADH oxidoreductase, F subunit [Escherichia coli MS 185-1]
 gi|300408545|gb|EFJ92083.1| NADH oxidoreductase, F subunit [Escherichia coli MS 45-1]
 gi|305851999|gb|EFM52451.1| NADH dehydrogenase I subunit F [Escherichia coli NC101]
 gi|307554346|gb|ADN47121.1| NADH dehydrogenase I chain F [Escherichia coli ABU 83972]
 gi|307626180|gb|ADN70484.1| NADH dehydrogenase I subunit F [Escherichia coli UM146]
 gi|312287779|gb|EFR15684.1| NADH oxidoreductase, F subunit [Escherichia coli 2362-75]
 gi|312946902|gb|ADR27729.1| NADH dehydrogenase I subunit F [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315285916|gb|EFU45354.1| NADH oxidoreductase, F subunit [Escherichia coli MS 110-3]
 gi|315292243|gb|EFU51595.1| NADH oxidoreductase, F subunit [Escherichia coli MS 153-1]
 gi|315298117|gb|EFU57386.1| NADH oxidoreductase, F subunit [Escherichia coli MS 16-3]
 gi|320196151|gb|EFW70775.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli WV_060327]
 gi|323187991|gb|EFZ73286.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli RN587/1]
 gi|323944797|gb|EGB40863.1| NADH oxidoreductase [Escherichia coli H120]
 gi|323952077|gb|EGB47951.1| NADH oxidoreductase [Escherichia coli H252]
 gi|323956050|gb|EGB51803.1| NADH oxidoreductase [Escherichia coli H263]
 gi|324006666|gb|EGB75885.1| NADH oxidoreductase, F subunit [Escherichia coli MS 57-2]
 gi|330912109|gb|EGH40619.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli AA86]
 gi|331043663|gb|EGI15801.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M605]
          Length = 445

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 166/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK SGL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G +G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|320178743|gb|EFW53706.1| NADH-ubiquinone oxidoreductase chain F [Shigella boydii ATCC 9905]
          Length = 445

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 169/402 (42%), Positives = 239/402 (59%), Gaps = 5/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  ++   K L +   D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 26  LDEYRSKNGYEGALKALTRLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 85

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    +L+ 
Sbjct: 86  YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRR 145

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 146 AIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P   E  
Sbjct: 206 TSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELP 265

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS LGT
Sbjct: 266 FGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGT 323

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ 
Sbjct: 324 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIET 383

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 384 LEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|310768161|gb|ADP13111.1| NADH dehydrogenase I chain F [Erwinia sp. Ejp617]
          Length = 446

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 165/375 (44%), Positives = 231/375 (61%), Gaps = 4/375 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I++ VK SGL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E  A+GLLG N    G+D 
Sbjct: 108 MPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATAAGLLGKNILGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE+++ VP 
Sbjct: 168 ELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLSNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY G    ++ GTK+   SG V  P   E     T  E++E++ GG+R G   
Sbjct: 228 ILANGVDWYKGISNSDDAGTKMMGFSGRVKNPGVWELPFGTTAREILEEYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L   Q     M++  + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFL-TEQHLDLPMEFASIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +   Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERKEGQPGDIETLLQLCRQLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIE 413
            P+Q  IK FR   E
Sbjct: 406 EPLQSAIKYFREEFE 420


>gi|22125529|ref|NP_668952.1| NADH dehydrogenase I subunit F [Yersinia pestis KIM 10]
 gi|45442151|ref|NP_993690.1| NADH dehydrogenase I subunit F [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108808038|ref|YP_651954.1| NADH dehydrogenase I subunit F [Yersinia pestis Antiqua]
 gi|108812308|ref|YP_648075.1| NADH dehydrogenase I subunit F [Yersinia pestis Nepal516]
 gi|145599241|ref|YP_001163317.1| NADH dehydrogenase I subunit F [Yersinia pestis Pestoides F]
 gi|149365543|ref|ZP_01887578.1| NADH dehydrogenase I chain F [Yersinia pestis CA88-4125]
 gi|153948766|ref|YP_001400436.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis IP
           31758]
 gi|162418531|ref|YP_001606301.1| NADH dehydrogenase I subunit F [Yersinia pestis Angola]
 gi|165925465|ref|ZP_02221297.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937656|ref|ZP_02226218.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008538|ref|ZP_02229436.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213813|ref|ZP_02239848.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399380|ref|ZP_02304904.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422281|ref|ZP_02314034.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424755|ref|ZP_02316508.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023805|ref|YP_001720310.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis YPIII]
 gi|218929637|ref|YP_002347512.1| NADH dehydrogenase I subunit F [Yersinia pestis CO92]
 gi|229838093|ref|ZP_04458252.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895292|ref|ZP_04510466.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Pestoides
           A]
 gi|229898653|ref|ZP_04513798.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902652|ref|ZP_04517769.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Nepal516]
 gi|270490166|ref|ZP_06207240.1| NADH oxidoreductase (quinone), F subunit [Yersinia pestis KIM D27]
 gi|294504365|ref|YP_003568427.1| NADH dehydrogenase I chain F [Yersinia pestis Z176003]
 gi|21958428|gb|AAM85203.1|AE013766_6 NADH dehydrogenase I chain F [Yersinia pestis KIM 10]
 gi|45437015|gb|AAS62567.1| NADH dehydrogenase I chain F [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775956|gb|ABG18475.1| NADH dehydrogenase I chain F [Yersinia pestis Nepal516]
 gi|108779951|gb|ABG14009.1| NADH dehydrogenase I chain F [Yersinia pestis Antiqua]
 gi|115348248|emb|CAL21176.1| NADH dehydrogenase I chain F [Yersinia pestis CO92]
 gi|145210937|gb|ABP40344.1| NADH dehydrogenase I chain F [Yersinia pestis Pestoides F]
 gi|149291956|gb|EDM42030.1| NADH dehydrogenase I chain F [Yersinia pestis CA88-4125]
 gi|152960261|gb|ABS47722.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis
           IP 31758]
 gi|162351346|gb|ABX85294.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis Angola]
 gi|165914406|gb|EDR33021.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922574|gb|EDR39725.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992920|gb|EDR45221.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204987|gb|EDR49467.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958787|gb|EDR55808.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051884|gb|EDR63292.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056637|gb|EDR66406.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750339|gb|ACA67857.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|229680099|gb|EEO76198.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Nepal516]
 gi|229688201|gb|EEO80272.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694459|gb|EEO84506.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701778|gb|EEO89803.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Pestoides
           A]
 gi|262362646|gb|ACY59367.1| NADH dehydrogenase I chain F [Yersinia pestis D106004]
 gi|262366275|gb|ACY62832.1| NADH dehydrogenase I chain F [Yersinia pestis D182038]
 gi|270338670|gb|EFA49447.1| NADH oxidoreductase (quinone), F subunit [Yersinia pestis KIM D27]
 gi|294354824|gb|ADE65165.1| NADH dehydrogenase I chain F [Yersinia pestis Z176003]
 gi|320014611|gb|ADV98182.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 461

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++N VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 57  VVNVVKDAGLKGRGGAGFSTGLKWSLMPKDDSMNIRYLLCNADEMEPGTYKDRLLMEQLP 116

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D ++
Sbjct: 117 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 176

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP I+
Sbjct: 177 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAII 236

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    IT  E++E + GG+R G   
Sbjct: 237 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 295

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 296 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 354

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 355 FSRESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 414

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 415 EPLQSAIKYFRDEFEAGI 432


>gi|238794603|ref|ZP_04638210.1| NADH-quinone oxidoreductase subunit F [Yersinia intermedia ATCC
           29909]
 gi|238726089|gb|EEQ17636.1| NADH-quinone oxidoreductase subunit F [Yersinia intermedia ATCC
           29909]
          Length = 439

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++N VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 41  VVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D ++
Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAISEATEAGLLGKNIMGSGFDFEL 160

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    I+  E++E + GG+R G   
Sbjct: 221 EHGVDWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGISAREILEDYAGGMRDGL-K 279

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 338

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 399 EPLQSAIKYFREEFEAGI 416


>gi|261346153|ref|ZP_05973797.1| NADH oxidoreductase, F subunit [Providencia rustigianii DSM 4541]
 gi|282565806|gb|EFB71341.1| NADH oxidoreductase, F subunit [Providencia rustigianii DSM 4541]
          Length = 453

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 170/404 (42%), Positives = 243/404 (60%), Gaps = 7/404 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +  V++ L+    D ++N VK +GL+GRGGAGFSTG+KWS MPK  + +  
Sbjct: 31  LDEYRSKNGYKGVERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDENMKLR 90

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y + NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE+I   + L+ 
Sbjct: 91  YFLCNADEMEPGTYKDRLLMEELPHLLVEGMIIGAYALKAYRGYIFLRGEYIEAAKHLRR 150

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 151 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 210

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
             G +G PT VNNVE+I  VP IL  G  WY     G+  + GTKL   SG V  P   E
Sbjct: 211 TSGAWGKPTCVNNVETICNVPAILEHGDQWYIDLSAGKSKDAGTKLMGFSGRVKNPGLWE 270

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + GS L
Sbjct: 271 LPFGTTAREVLEDYAGGMRDGL-KLKAWQPGGAGTDFLTNDHL-DLPMDFENIAKAGSRL 328

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W +++++ L KG  Q+ +I
Sbjct: 329 GTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQEGDI 388

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + L ++ + +  G+T CA    A  P+Q  IK FR   E  I +
Sbjct: 389 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRKEFEAGISK 432


>gi|15802831|ref|NP_288858.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 EDL933]
 gi|15832422|ref|NP_311195.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str.
           Sakai]
 gi|24113656|ref|NP_708166.1| NADH dehydrogenase I subunit F [Shigella flexneri 2a str. 301]
 gi|30063710|ref|NP_837881.1| NADH dehydrogenase I subunit F [Shigella flexneri 2a str. 2457T]
 gi|74312802|ref|YP_311221.1| NADH dehydrogenase I subunit F [Shigella sonnei Ss046]
 gi|82544762|ref|YP_408709.1| NADH dehydrogenase I subunit F [Shigella boydii Sb227]
 gi|157155010|ref|YP_001463627.1| NADH dehydrogenase I subunit F [Escherichia coli E24377A]
 gi|157161772|ref|YP_001459090.1| NADH dehydrogenase I subunit F [Escherichia coli HS]
 gi|168748133|ref|ZP_02773155.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755036|ref|ZP_02780043.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761277|ref|ZP_02786284.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767910|ref|ZP_02792917.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772990|ref|ZP_02797997.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780139|ref|ZP_02805146.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787191|ref|ZP_02812198.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798454|ref|ZP_02823461.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170019407|ref|YP_001724361.1| NADH dehydrogenase I subunit F [Escherichia coli ATCC 8739]
 gi|187730354|ref|YP_001881105.1| NADH dehydrogenase I subunit F [Shigella boydii CDC 3083-94]
 gi|191166468|ref|ZP_03028298.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B7A]
 gi|193068131|ref|ZP_03049095.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E110019]
 gi|195935661|ref|ZP_03081043.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808283|ref|ZP_03250620.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208813079|ref|ZP_03254408.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208821937|ref|ZP_03262257.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209395949|ref|YP_002271693.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209919732|ref|YP_002293816.1| NADH dehydrogenase I subunit F [Escherichia coli SE11]
 gi|217327207|ref|ZP_03443290.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218548267|ref|YP_002382058.1| NADH dehydrogenase I subunit F [Escherichia fergusonii ATCC 35469]
 gi|218554840|ref|YP_002387753.1| NADH dehydrogenase I subunit F [Escherichia coli IAI1]
 gi|218695883|ref|YP_002403550.1| NADH dehydrogenase I subunit F [Escherichia coli 55989]
 gi|218705814|ref|YP_002413333.1| NADH dehydrogenase I subunit F [Escherichia coli UMN026]
 gi|254794176|ref|YP_003079013.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223262|ref|ZP_05937543.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259188|ref|ZP_05951721.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283525|ref|YP_003500343.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O55:H7
           str. CB9615]
 gi|293405750|ref|ZP_06649742.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1412]
 gi|293446621|ref|ZP_06663043.1| NADH oxidoreductase [Escherichia coli B088]
 gi|298381433|ref|ZP_06991032.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1302]
 gi|300818115|ref|ZP_07098327.1| NADH oxidoreductase, F subunit [Escherichia coli MS 107-1]
 gi|300822155|ref|ZP_07102297.1| NADH oxidoreductase, F subunit [Escherichia coli MS 119-7]
 gi|300896958|ref|ZP_07115439.1| NADH oxidoreductase, F subunit [Escherichia coli MS 198-1]
 gi|300903669|ref|ZP_07121585.1| NADH oxidoreductase, F subunit [Escherichia coli MS 84-1]
 gi|300918551|ref|ZP_07135141.1| NADH oxidoreductase, F subunit [Escherichia coli MS 115-1]
 gi|300924543|ref|ZP_07140507.1| NADH oxidoreductase, F subunit [Escherichia coli MS 182-1]
 gi|301024082|ref|ZP_07187796.1| NADH oxidoreductase, F subunit [Escherichia coli MS 69-1]
 gi|301303257|ref|ZP_07209382.1| NADH oxidoreductase, F subunit [Escherichia coli MS 124-1]
 gi|301328776|ref|ZP_07221824.1| NADH oxidoreductase, F subunit [Escherichia coli MS 78-1]
 gi|307311156|ref|ZP_07590800.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli W]
 gi|309793163|ref|ZP_07687591.1| NADH oxidoreductase, F subunit [Escherichia coli MS 145-7]
 gi|331668982|ref|ZP_08369830.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA271]
 gi|331678230|ref|ZP_08378905.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H591]
 gi|331683955|ref|ZP_08384551.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H299]
 gi|12516634|gb|AAG57413.1|AE005460_7 NADH dehydrogenase I chain F [Escherichia coli O157:H7 str. EDL933]
 gi|13362638|dbj|BAB36591.1| NADH dehydrogenase I chain F [Escherichia coli O157:H7 str. Sakai]
 gi|24052720|gb|AAN43873.1| NADH dehydrogenase I chain F [Shigella flexneri 2a str. 301]
 gi|30041965|gb|AAP17691.1| NADH dehydrogenase I chain F [Shigella flexneri 2a str. 2457T]
 gi|73856279|gb|AAZ88986.1| NADH dehydrogenase I chain F [Shigella sonnei Ss046]
 gi|81246173|gb|ABB66881.1| NADH dehydrogenase I chain F [Shigella boydii Sb227]
 gi|157067452|gb|ABV06707.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli HS]
 gi|157077040|gb|ABV16748.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E24377A]
 gi|169754335|gb|ACA77034.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli ATCC 8739]
 gi|187427346|gb|ACD06620.1| NADH-quinone oxidoreductase, F subunit [Shigella boydii CDC
           3083-94]
 gi|187771025|gb|EDU34869.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017288|gb|EDU55410.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|189001980|gb|EDU70966.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357618|gb|EDU76037.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189362935|gb|EDU81354.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368325|gb|EDU86741.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372792|gb|EDU91208.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189378940|gb|EDU97356.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190903428|gb|EDV63147.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B7A]
 gi|192958410|gb|EDV88849.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E110019]
 gi|208728084|gb|EDZ77685.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208734356|gb|EDZ83043.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208742060|gb|EDZ89742.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209157349|gb|ACI34782.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765108|gb|ACI80866.1| NADH dehydrogenase I chain F [Escherichia coli]
 gi|209765110|gb|ACI80867.1| NADH dehydrogenase I chain F [Escherichia coli]
 gi|209765112|gb|ACI80868.1| NADH dehydrogenase I chain F [Escherichia coli]
 gi|209765114|gb|ACI80869.1| NADH dehydrogenase I chain F [Escherichia coli]
 gi|209765116|gb|ACI80870.1| NADH dehydrogenase I chain F [Escherichia coli]
 gi|209912991|dbj|BAG78065.1| NADH dehydrogenase I chain F [Escherichia coli SE11]
 gi|217319574|gb|EEC27999.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218352615|emb|CAU98396.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli 55989]
 gi|218355808|emb|CAQ88421.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia fergusonii
           ATCC 35469]
 gi|218361608|emb|CAQ99200.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli IAI1]
 gi|218432911|emb|CAR13805.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli UMN026]
 gi|254593576|gb|ACT72937.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7
           str. TW14359]
 gi|281601725|gb|ADA74709.1| NADH dehydrogenase I chain F [Shigella flexneri 2002017]
 gi|290763398|gb|ADD57359.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O55:H7
           str. CB9615]
 gi|291323451|gb|EFE62879.1| NADH oxidoreductase [Escherichia coli B088]
 gi|291427958|gb|EFF00985.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1412]
 gi|298278875|gb|EFI20389.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1302]
 gi|300359226|gb|EFJ75096.1| NADH oxidoreductase, F subunit [Escherichia coli MS 198-1]
 gi|300396738|gb|EFJ80276.1| NADH oxidoreductase, F subunit [Escherichia coli MS 69-1]
 gi|300404325|gb|EFJ87863.1| NADH oxidoreductase, F subunit [Escherichia coli MS 84-1]
 gi|300414286|gb|EFJ97596.1| NADH oxidoreductase, F subunit [Escherichia coli MS 115-1]
 gi|300419261|gb|EFK02572.1| NADH oxidoreductase, F subunit [Escherichia coli MS 182-1]
 gi|300525285|gb|EFK46354.1| NADH oxidoreductase, F subunit [Escherichia coli MS 119-7]
 gi|300529259|gb|EFK50321.1| NADH oxidoreductase, F subunit [Escherichia coli MS 107-1]
 gi|300841431|gb|EFK69191.1| NADH oxidoreductase, F subunit [Escherichia coli MS 124-1]
 gi|300844838|gb|EFK72598.1| NADH oxidoreductase, F subunit [Escherichia coli MS 78-1]
 gi|306908662|gb|EFN39159.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli W]
 gi|308123449|gb|EFO60711.1| NADH oxidoreductase, F subunit [Escherichia coli MS 145-7]
 gi|313651107|gb|EFS15506.1| NADH oxidoreductase, F subunit [Shigella flexneri 2a str. 2457T]
 gi|315061576|gb|ADT75903.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli W]
 gi|315255218|gb|EFU35186.1| NADH oxidoreductase, F subunit [Escherichia coli MS 85-1]
 gi|320177166|gb|EFW52178.1| NADH-ubiquinone oxidoreductase chain F [Shigella dysenteriae CDC
           74-1112]
 gi|320183379|gb|EFW58231.1| NADH-ubiquinone oxidoreductase chain F [Shigella flexneri CDC
           796-83]
 gi|320192095|gb|EFW66740.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7
           str. EC1212]
 gi|320641111|gb|EFX10590.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str.
           G5101]
 gi|320646499|gb|EFX15418.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H- str.
           493-89]
 gi|320651596|gb|EFX19976.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H- str. H
           2687]
 gi|320657348|gb|EFX25150.1| NADH dehydrogenase I subunit F [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663050|gb|EFX30367.1| NADH dehydrogenase I subunit F [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667868|gb|EFX34776.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323184397|gb|EFZ69773.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli 1357]
 gi|323377844|gb|ADX50112.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli KO11]
 gi|323967725|gb|EGB63137.1| NADH oxidoreductase [Escherichia coli M863]
 gi|323977515|gb|EGB72601.1| NADH oxidoreductase [Escherichia coli TW10509]
 gi|324020880|gb|EGB90099.1| NADH oxidoreductase, F subunit [Escherichia coli MS 117-3]
 gi|324112816|gb|EGC06792.1| NADH oxidoreductase [Escherichia fergusonii B253]
 gi|324117838|gb|EGC11737.1| NADH oxidoreductase [Escherichia coli E1167]
 gi|325496681|gb|EGC94540.1| NADH dehydrogenase I subunit F [Escherichia fergusonii ECD227]
 gi|326339635|gb|EGD63446.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7
           str. 1125]
 gi|326344097|gb|EGD67858.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7
           str. 1044]
 gi|327252554|gb|EGE64213.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli STEC_7v]
 gi|331064176|gb|EGI36087.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA271]
 gi|331074690|gb|EGI46010.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H591]
 gi|331078907|gb|EGI50109.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H299]
 gi|332093612|gb|EGI98670.1| NADH oxidoreductase (quinone), F subunit [Shigella boydii 3594-74]
 gi|332344065|gb|AEE57399.1| NADH oxidoreductase NuoF [Escherichia coli UMNK88]
 gi|332754932|gb|EGJ85297.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri
           4343-70]
 gi|332755333|gb|EGJ85697.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-671]
 gi|332756192|gb|EGJ86543.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri
           2747-71]
 gi|332766103|gb|EGJ96313.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri
           2930-71]
 gi|333001428|gb|EGK20996.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri VA-6]
 gi|333001728|gb|EGK21294.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-218]
 gi|333002651|gb|EGK22211.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-272]
 gi|333016398|gb|EGK35729.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-304]
 gi|333016535|gb|EGK35865.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-227]
          Length = 445

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|194433349|ref|ZP_03065629.1| NADH-quinone oxidoreductase, F subunit [Shigella dysenteriae 1012]
 gi|194418443|gb|EDX34532.1| NADH-quinone oxidoreductase, F subunit [Shigella dysenteriae 1012]
 gi|332088414|gb|EGI93532.1| NADH oxidoreductase (quinone), F subunit [Shigella boydii 5216-82]
 gi|332090604|gb|EGI95700.1| NADH oxidoreductase (quinone), F subunit [Shigella dysenteriae
           155-74]
          Length = 445

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|194374173|dbj|BAG62399.1| unnamed protein product [Homo sapiens]
          Length = 335

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/217 (67%), Positives = 174/217 (80%)

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           G PTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+  
Sbjct: 108 GRPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPL 167

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            ELIEKH GG+ GGWDNLLAVIPGGSS P +P       +MD+D L +  +GLGTAAVIV
Sbjct: 168 KELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIV 227

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           MDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +VM R V+G A+  EID L+E+S
Sbjct: 228 MDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEIS 287

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           K IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 288 KQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 324



 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 58/93 (62%), Gaps = 1/93 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLV-VNADESEPGTCK 93
           TG+KWSFM K    RP  +  V      P  C+
Sbjct: 95  TGLKWSFMNKPSDGRPTTVANVETVAVSPTICR 127


>gi|51596902|ref|YP_071093.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis IP
           32953]
 gi|186895983|ref|YP_001873095.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis PB1/+]
 gi|51590184|emb|CAH21821.1| NADH dehydrogenase I chain F [Yersinia pseudotuberculosis IP 32953]
 gi|186699009|gb|ACC89638.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis
           PB1/+]
          Length = 461

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++N VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 57  VVNVVKDAGLKGRGGAGFSTGLKWSLMPKDDSMNIRYLLCNADEMEPGTYKDRLLMEQLP 116

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D ++
Sbjct: 117 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 176

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP I+
Sbjct: 177 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAII 236

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    IT  E++E + GG+R G   
Sbjct: 237 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 295

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 296 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 354

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 355 FSRESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 414

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 415 EPLQSAIKYFRDEFEAGI 432


>gi|293415577|ref|ZP_06658220.1| NADH oxidoreductase [Escherichia coli B185]
 gi|291433225|gb|EFF06204.1| NADH oxidoreductase [Escherichia coli B185]
          Length = 445

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|183599632|ref|ZP_02961125.1| hypothetical protein PROSTU_03119 [Providencia stuartii ATCC 25827]
 gi|188021884|gb|EDU59924.1| hypothetical protein PROSTU_03119 [Providencia stuartii ATCC 25827]
          Length = 452

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/404 (42%), Positives = 242/404 (59%), Gaps = 7/404 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +  V++ L+    D +++ VK +GL+GRGGAGFSTG+KWS MPK  + +  
Sbjct: 30  LDEYRSKNGYKGVERALKGMAPDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDENMKLR 89

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y + NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE++   + L+ 
Sbjct: 90  YFLCNADEMEPGTYKDRLLMEQLPHLLVEGMIIGAYALKAYRGYIFLRGEYVEAAKHLRR 149

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 150 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 209

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
             G +G PT VNNVE+I  VP IL  G  WY     G+  + GTKL   SG V  P   E
Sbjct: 210 TSGAWGKPTCVNNVETICNVPAILEHGEQWYINLSAGKSKDAGTKLMGFSGRVKNPGLWE 269

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E + GG+R G   L A  PGG+    L  G      MD++ + + GS L
Sbjct: 270 LPFGTTAREVLEDYAGGMRDGL-TLKAWQPGGAGTDFL-TGDHLDLPMDFESIGKAGSRL 327

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W +++++ L KG  Q  +I
Sbjct: 328 GTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQPGDI 387

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 388 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGISQ 431


>gi|320199872|gb|EFW74461.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli EC4100B]
          Length = 445

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 230/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|238788650|ref|ZP_04632442.1| NADH-quinone oxidoreductase subunit F [Yersinia frederiksenii ATCC
           33641]
 gi|238723245|gb|EEQ14893.1| NADH-quinone oxidoreductase subunit F [Yersinia frederiksenii ATCC
           33641]
          Length = 440

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 233/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 41  VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D ++
Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAANLRRAIAEATEAGLLGKNIMGSGFDFEL 160

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    IT  E++E + GG+R G   
Sbjct: 221 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 279

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVTLVRNLEEF 338

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 399 EPLQSAIKYFREEFEAGI 416


>gi|238753750|ref|ZP_04615111.1| NADH-quinone oxidoreductase subunit F [Yersinia ruckeri ATCC 29473]
 gi|238707986|gb|EEQ00343.1| NADH-quinone oxidoreductase subunit F [Yersinia ruckeri ATCC 29473]
          Length = 439

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++N VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 41  VVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D ++
Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 160

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    I+  E++E + GG+R G   
Sbjct: 221 EHGVDWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGISAREILEDYAGGMRDGL-K 279

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 338

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 399 EPLQSAIKYFRDEFEAGI 416


>gi|259907931|ref|YP_002648287.1| NADH dehydrogenase I subunit F [Erwinia pyrifoliae Ep1/96]
 gi|224963553|emb|CAX55043.1| NADH dehydrogenase I chain F [Erwinia pyrifoliae Ep1/96]
 gi|283477812|emb|CAY73728.1| NADH dehydrogenase I chain F [Erwinia pyrifoliae DSM 12163]
          Length = 446

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 168/397 (42%), Positives = 238/397 (59%), Gaps = 5/397 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +   +K L+    D I++ VK SGL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 26  LEEYRSKNGYAGAEKALKSMAPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDASMNIR 85

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    +L+ 
Sbjct: 86  YLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRR 145

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 146 AIAEATEAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + G++G PT VNNVE+++ VP IL  G  WY G     + GTK+   SG V  P   E  
Sbjct: 206 SAGVWGKPTCVNNVETLSNVPAILANGVDWYKGISTSEDAGTKMMGFSGRVKNPGVWELP 265

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E++E++ GG+R G     A  PGG+    L   Q     M++  + + GS LGT
Sbjct: 266 FGTTAREILEEYAGGMRDGL-KFKAWQPGGAGTDFL-TEQHLDLPMEFASIGKAGSRLGT 323

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  +I+ 
Sbjct: 324 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKQGQPGDIET 383

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
           L ++ + +  G+T CA    A  P+Q  IK FR   E
Sbjct: 384 LLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 420


>gi|146312470|ref|YP_001177544.1| NADH dehydrogenase I subunit F [Enterobacter sp. 638]
 gi|145319346|gb|ABP61493.1| NADH dehydrogenase subunit F [Enterobacter sp. 638]
          Length = 445

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 170/402 (42%), Positives = 237/402 (58%), Gaps = 5/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  ++   K L     D I+N VK +GL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 26  LDEYQSKNGYEGARKALAGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 85

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   E+L+ 
Sbjct: 86  YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAENLRR 145

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 146 AIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + G++G PT VNNVE++  VP IL  G  WY       + GTKL   SG V  P   E  
Sbjct: 206 SSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGLWELP 265

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS LGT
Sbjct: 266 FGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGT 323

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ 
Sbjct: 324 ALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIET 383

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 384 LEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|16130219|ref|NP_416787.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12
           substr. MG1655]
 gi|82777692|ref|YP_404041.1| NADH dehydrogenase I subunit F [Shigella dysenteriae Sd197]
 gi|89109102|ref|AP_002882.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12
           substr. W3110]
 gi|110642488|ref|YP_670218.1| NADH dehydrogenase I subunit F [Escherichia coli 536]
 gi|170081901|ref|YP_001731221.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12
           substr. DH10B]
 gi|170680196|ref|YP_001744482.1| NADH dehydrogenase I subunit F [Escherichia coli SMS-3-5]
 gi|188495817|ref|ZP_03003087.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 53638]
 gi|191170009|ref|ZP_03031563.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli F11]
 gi|193062282|ref|ZP_03043377.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E22]
 gi|194427216|ref|ZP_03059767.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B171]
 gi|194436158|ref|ZP_03068260.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 101-1]
 gi|218700758|ref|YP_002408387.1| NADH dehydrogenase I subunit F [Escherichia coli IAI39]
 gi|238901459|ref|YP_002927255.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli BW2952]
 gi|253772794|ref|YP_003035625.1| NADH dehydrogenase I subunit F [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162293|ref|YP_003045401.1| NADH dehydrogenase I subunit F [Escherichia coli B str. REL606]
 gi|256017560|ref|ZP_05431425.1| NADH dehydrogenase I subunit F [Shigella sp. D9]
 gi|256022032|ref|ZP_05435897.1| NADH dehydrogenase I subunit F [Escherichia sp. 4_1_40B]
 gi|260844871|ref|YP_003222649.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O103:H2
           str. 12009]
 gi|260856328|ref|YP_003230219.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O26:H11
           str. 11368]
 gi|260869007|ref|YP_003235409.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O111:H-
           str. 11128]
 gi|293410644|ref|ZP_06654220.1| NADH oxidoreductase [Escherichia coli B354]
 gi|297519443|ref|ZP_06937829.1| NADH dehydrogenase I subunit F [Escherichia coli OP50]
 gi|300931363|ref|ZP_07146694.1| NADH oxidoreductase, F subunit [Escherichia coli MS 187-1]
 gi|300936849|ref|ZP_07151738.1| NADH oxidoreductase, F subunit [Escherichia coli MS 21-1]
 gi|300956456|ref|ZP_07168745.1| NADH oxidoreductase, F subunit [Escherichia coli MS 175-1]
 gi|300981074|ref|ZP_07175346.1| NADH oxidoreductase, F subunit [Escherichia coli MS 200-1]
 gi|301026954|ref|ZP_07190347.1| NADH oxidoreductase, F subunit [Escherichia coli MS 196-1]
 gi|301647619|ref|ZP_07247415.1| NADH oxidoreductase, F subunit [Escherichia coli MS 146-1]
 gi|307138948|ref|ZP_07498304.1| NADH dehydrogenase I subunit F [Escherichia coli H736]
 gi|309785012|ref|ZP_07679645.1| NADH oxidoreductase, F subunit [Shigella dysenteriae 1617]
 gi|312973457|ref|ZP_07787629.1| NADH oxidoreductase, F subunit [Escherichia coli 1827-70]
 gi|331642922|ref|ZP_08344057.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H736]
 gi|331653726|ref|ZP_08354727.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M718]
 gi|332278570|ref|ZP_08390983.1| NADH:ubiquinone oxidoreductase [Shigella sp. D9]
 gi|2506953|sp|P31979|NUOF_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F; AltName: Full=NUO6
 gi|1788620|gb|AAC75344.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12
           substr. MG1655]
 gi|1799645|dbj|BAA16113.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K12
           substr. W3110]
 gi|81241840|gb|ABB62550.1| NADH dehydrogenase I chain F [Shigella dysenteriae Sd197]
 gi|110344080|gb|ABG70317.1| NADH dehydrogenase I chain F [Escherichia coli 536]
 gi|169889736|gb|ACB03443.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12
           substr. DH10B]
 gi|170517914|gb|ACB16092.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli SMS-3-5]
 gi|188491016|gb|EDU66119.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 53638]
 gi|190909525|gb|EDV69110.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli F11]
 gi|192931948|gb|EDV84547.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E22]
 gi|194414837|gb|EDX31108.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B171]
 gi|194424886|gb|EDX40871.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 101-1]
 gi|218370744|emb|CAR18557.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli IAI39]
 gi|238861870|gb|ACR63868.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli BW2952]
 gi|242377917|emb|CAQ32686.1| NADH:ubiquinone oxidoreductase, chain F, subunit of soluble NADH
           dehydrogenase fragment and NADH:ubiquinone
           oxidoreductase I [Escherichia coli BL21(DE3)]
 gi|253323838|gb|ACT28440.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974194|gb|ACT39865.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli B str.
           REL606]
 gi|253978361|gb|ACT44031.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli
           BL21(DE3)]
 gi|257754977|dbj|BAI26479.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O26:H11
           str. 11368]
 gi|257760018|dbj|BAI31515.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O103:H2
           str. 12009]
 gi|257765363|dbj|BAI36858.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O111:H-
           str. 11128]
 gi|260448623|gb|ACX39045.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli DH1]
 gi|291471112|gb|EFF13596.1| NADH oxidoreductase [Escherichia coli B354]
 gi|299879501|gb|EFI87712.1| NADH oxidoreductase, F subunit [Escherichia coli MS 196-1]
 gi|300307687|gb|EFJ62207.1| NADH oxidoreductase, F subunit [Escherichia coli MS 200-1]
 gi|300316726|gb|EFJ66510.1| NADH oxidoreductase, F subunit [Escherichia coli MS 175-1]
 gi|300458036|gb|EFK21529.1| NADH oxidoreductase, F subunit [Escherichia coli MS 21-1]
 gi|300460825|gb|EFK24318.1| NADH oxidoreductase, F subunit [Escherichia coli MS 187-1]
 gi|301074246|gb|EFK89052.1| NADH oxidoreductase, F subunit [Escherichia coli MS 146-1]
 gi|308927382|gb|EFP72856.1| NADH oxidoreductase, F subunit [Shigella dysenteriae 1617]
 gi|309702596|emb|CBJ01924.1| NADH-quinone oxidoreductase subunit F [Escherichia coli ETEC
           H10407]
 gi|310332052|gb|EFP99287.1| NADH oxidoreductase, F subunit [Escherichia coli 1827-70]
 gi|315136918|dbj|BAJ44077.1| NADH dehydrogenase I subunit F [Escherichia coli DH1]
 gi|315615553|gb|EFU96185.1| NADH oxidoreductase, F subunit [Escherichia coli 3431]
 gi|323156434|gb|EFZ42589.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli EPECa14]
 gi|323161618|gb|EFZ47503.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli E128010]
 gi|323176791|gb|EFZ62381.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli 1180]
 gi|323936574|gb|EGB32861.1| NADH oxidoreductase [Escherichia coli E1520]
 gi|323941019|gb|EGB37206.1| NADH oxidoreductase [Escherichia coli E482]
 gi|323961467|gb|EGB57077.1| NADH oxidoreductase [Escherichia coli H489]
 gi|323973011|gb|EGB68205.1| NADH oxidoreductase [Escherichia coli TA007]
 gi|324013176|gb|EGB82395.1| NADH oxidoreductase, F subunit [Escherichia coli MS 60-1]
 gi|331039720|gb|EGI11940.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H736]
 gi|331048575|gb|EGI20651.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M718]
 gi|332100922|gb|EGJ04268.1| NADH:ubiquinone oxidoreductase [Shigella sp. D9]
          Length = 445

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G +G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|114566549|ref|YP_753703.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337484|gb|ABI68332.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 407

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/416 (39%), Positives = 249/416 (59%), Gaps = 11/416 (2%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + ++ RI    YG +    + D +++G + +++K        +I EVK S LRGRGGAGF
Sbjct: 1   MAEEMRIVLRNYGKIDPLKIDDYLAQGGYKSLEKARAMNTADLIAEVKKSNLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           + GMKWSF     +D+  Y++ NADE EPGT KDR IM ++PHTLIEG  I ++AIGA  
Sbjct: 61  NCGMKWSFAAGAQADQ-KYVICNADEGEPGTYKDRLIMENDPHTLIEGMAICAYAIGATQ 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+     +L  A+++    GL+        D DI V  GAGAY+CGEETAL+E
Sbjct: 120 GYIYLRGEYPFLVSTLNTAINQAKEKGLV-------KDFDIEVRSGAGAYVCGEETALIE 172

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PR KPP+P + GL+  PT VNNVE+ A +P I+ +GA WY+  G     GTK
Sbjct: 173 SIEGKRGEPRFKPPYPPSEGLWSKPTIVNNVETFANIPVIIEKGADWYASIGNPAYPGTK 232

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +N     E   + T  E++ +  GG+ G      AV  GG+S   +P   +  
Sbjct: 233 VFTLTGDINNRTFFEVPTNTTIREIVFQFGGGVPGD-KKFKAVQIGGTSGAFIPDALLDT 291

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +  +D +  +G+ LG+ A  V+D S DI+    R++ F++HESCG+C PCREGT     
Sbjct: 292 PVA-FDSMSAIGATLGSGATFVIDESRDIVDVATRIAGFFEHESCGKCAPCREGTARTAE 350

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +ME++ +G    +++ LL ++   +    +C LG AA  P+   IK+F+   E + 
Sbjct: 351 LMEKINEGRGSNKDVALLEKLGTVMSYSCLCGLGQAAPAPVLTTIKHFKADYEAKF 406


>gi|300114497|ref|YP_003761072.1| NADH-quinone oxidoreductase subunit F [Nitrosococcus watsonii
           C-113]
 gi|299540434|gb|ADJ28751.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus watsonii
           C-113]
          Length = 424

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/387 (43%), Positives = 235/387 (60%), Gaps = 8/387 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           ++ EVK S LRGRGGAGF TG KWSF+P    + RP YLV NADE EPGT KDR +M  +
Sbjct: 42  VLQEVKESNLRGRGGAGFPTGKKWSFVPMGDDAPRPKYLVANADEMEPGTFKDRLLMEGD 101

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDV 159
           PH L+EG ++AS+AI A  A+I++R E+    + L+ A+ E Y    LG N  LG  + +
Sbjct: 102 PHQLLEGMILASYAIQAEVAYIFLRAEYRLAAQRLKKAIAEAYEMNYLGKNL-LGSAFSL 160

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ +H  AG YICGEETALL +LEGK+  PR KPP+P   GL+G PT VNNVE++  VP 
Sbjct: 161 ELHLHTSAGRYICGEETALLNALEGKRAIPRAKPPYPQVSGLWGQPTVVNNVETLCNVPH 220

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ RGA+WY    R  + GTK +  SG V +P   E  M     E++E+H GG++ G+  
Sbjct: 221 IIARGAAWYQNLSRSEDGGTKFYGASGRVKHPGAWELPMGTPIREILEEHAGGMKDGF-Q 279

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L  ++PGG+S   L    +    MDYD ++  GS LGT  +I++D  T  +  +  L  F
Sbjct: 280 LRGLLPGGASTDFLTEEHL-DVPMDYDSVQSAGSRLGTGTMIILDDRTCPVGMLCNLEHF 338

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W+ +++  + +G  Q  ++D L   ++ +  G T CA    A 
Sbjct: 339 FAQESCGWCTPCRDGLPWVEKILLGIEQGQGQPEDLDYLTMHTRLLGPGHTFCAHAPGAM 398

Query: 399 WPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            P+Q  +K FR   E+ I  + RC F+
Sbjct: 399 EPLQSALKYFRADFEQHI-HHQRCPFK 424


>gi|46446198|ref|YP_007563.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399839|emb|CAF23288.1| probable NADH-ubiquinone oxidoreductase chain F [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 432

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/381 (46%), Positives = 227/381 (59%), Gaps = 13/381 (3%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  VK S LRGRGG GF TG+KWSF+PK C     YLV N DESEPGT KDR I+ +
Sbjct: 41  DQLIEMVKQSWLRGRGGGGFQTGLKWSFVPKDCQIS-KYLVCNCDESEPGTFKDRYIIEN 99

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH LIEG ++A +AIGA  AFIY RGEF    + L+ A+ E    G L +   +  + V
Sbjct: 100 DPHQLIEGIILACYAIGAKQAFIYCRGEFFEGNKKLRLAIQEAKKRGYLEAPLGEANFSV 159

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            IIVH GAGAYI GEETA L SLEG +  PRLKPPFPA  GLY  PT VNNVE++  V  
Sbjct: 160 SIIVHPGAGAYIAGEETAQLNSLEGYRATPRLKPPFPAVSGLYEKPTVVNNVETLCNVVH 219

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW-- 277
           I+ RG  WY   G+  N GTK+F +SGHV  P   E  + I   E++E      R GW  
Sbjct: 220 IVNRGVEWYQSIGKPKNTGTKIFQVSGHVQNPGCFEFPLGIPLKEVLE------RAGWML 273

Query: 278 --DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                 A  PGGSS   L    +    MD+D +    S LGTA++IVMD STD++K   R
Sbjct: 274 PGHQFKACYPGGSSCSLLTERDLDTP-MDFDSVAAKKSMLGTASIIVMDDSTDMVKVANR 332

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           L  FY++ESCG+CTPCREGT W  +++ R++ G     ++  +  + + +E  + C L  
Sbjct: 333 LMEFYQNESCGKCTPCREGTRWTKQILTRILAGRGTVGDLKTIERICQQMEMDSFCPLAP 392

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            AA PI   I+ FR   E  I
Sbjct: 393 GAALPIVSAIREFRGEFESYI 413


>gi|188533351|ref|YP_001907148.1| NADH dehydrogenase I subunit F [Erwinia tasmaniensis Et1/99]
 gi|188028393|emb|CAO96254.1| NADH dehydrogenase I chain F [Erwinia tasmaniensis Et1/99]
          Length = 446

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/397 (42%), Positives = 239/397 (60%), Gaps = 5/397 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +   +K L+    D I++ VK SGL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 26  LEEYRSKNGYAGAEKALKTLAPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIR 85

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    +L+ 
Sbjct: 86  YLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRR 145

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 146 AIAEATEAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + G++G PT VNNVE+++ VP IL  G  WY G    ++ GTK+   SG V  P   E  
Sbjct: 206 SAGVWGKPTCVNNVETLSNVPAILANGVDWYKGISNSDDAGTKMMGFSGRVKNPGVWELP 265

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E++E++ GG+R G     A  PGG+    L   Q     M++  + + GS LGT
Sbjct: 266 FGTTAREILEEYAGGMRDGL-KFKAWQPGGAGTDFL-TEQHLDLPMEFASIGKAGSRLGT 323

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  +I+ 
Sbjct: 324 ALAMAVDHEINMVSLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERKEGQPGDIET 383

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
           L ++ + +  G+T CA    A  P+Q  IK FR   E
Sbjct: 384 LLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 420


>gi|291618185|ref|YP_003520927.1| NuoF [Pantoea ananatis LMG 20103]
 gi|291153215|gb|ADD77799.1| NuoF [Pantoea ananatis LMG 20103]
 gi|327394578|dbj|BAK12000.1| NADH-quinone oxidoreductase chain F Nuof [Pantoea ananatis AJ13355]
          Length = 448

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/400 (42%), Positives = 239/400 (59%), Gaps = 5/400 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +   +K L+    D I+  VK SGL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 28  LDEYRSKNGYAGAEKALKGMAPDEIVALVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIR 87

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I     L+ 
Sbjct: 88  YLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRR 147

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 148 AIAEATEAGLLGKNILGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 207

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + G++G PT VNNVE+++ VP IL  G  WY G  + ++ GTKL   SG V  P   E  
Sbjct: 208 SAGVWGKPTCVNNVETLSNVPAILANGVEWYQGLSKSDDAGTKLMGFSGRVKNPGVWELP 267

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  E++E + GG+R G     A  PGG+    L   Q     M++  + + GS LGT
Sbjct: 268 FGITAREILEDYAGGMRDGL-RFKAWQPGGAGTDFLTE-QHLDLPMEFASIGKAGSRLGT 325

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  +I+ 
Sbjct: 326 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKKGQPGDIET 385

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 386 LEQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 425


>gi|296274180|ref|YP_003656811.1| NADH dehydrogenase [Arcobacter nitrofigilis DSM 7299]
 gi|296098354|gb|ADG94304.1| NADH dehydrogenase (quinone) [Arcobacter nitrofigilis DSM 7299]
          Length = 423

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 171/402 (42%), Positives = 248/402 (61%), Gaps = 4/402 (0%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            L  ++  G + +++K+     + +  EV  SGLRG+GG G + G KW  MP V  +RP 
Sbjct: 22  KLDVALKNGRYTSIEKLFTMAPEDVTEEVCKSGLRGKGGGGAACGPKWKLMPPV-DERPR 80

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+VN DESEPGT KDR I +++PH LIEG + + +AIGAH A+IY+RGE+    + L  
Sbjct: 81  YLIVNGDESEPGTFKDRQIFQYDPHLLIEGIICSCYAIGAHDAYIYIRGEYKWFIDRLNE 140

Query: 139 AVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+DE YA+G++G     K  + VDI VH G GAYICGE++AL+ESLEGK+G PRLKP   
Sbjct: 141 AIDEAYAAGIIGDKIMGKHDFRVDITVHRGGGAYICGEKSALIESLEGKRGHPRLKPHGK 200

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
                Y  P TVNNVE+IA VP I+  G   Y+ +G E   GT LF++SG V  P   E 
Sbjct: 201 ECEWFYDMPATVNNVETIASVPNIVENGYESYTKYGTEKAPGTMLFAMSGPVKNPGVYEL 260

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
                  ++I +  GG++ G   L AVIPGG+S P L A  +  A +DY+ + ++GS LG
Sbjct: 261 QYGCKMADVINEIGGGMQDGL-KLKAVIPGGASCPILTAADVEKAYLDYESMWDIGSTLG 319

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T  ++++     ++     L  FY HESCGQCTPCREGTGW+ +++  L++G+A++ +I+
Sbjct: 320 TGGMMIIPEGVSMVDVAKNLIEFYHHESCGQCTPCREGTGWIDKILRELIEGVAKEDDIE 379

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            L +V   + G+TIC    A    I+ +++ ++    E I+ 
Sbjct: 380 TLLDVCDTMNGKTICVFAPAVKDIIKSIVEKYKHEFLELIEN 421


>gi|238798408|ref|ZP_04641889.1| NADH-quinone oxidoreductase subunit F [Yersinia mollaretii ATCC
           43969]
 gi|238717722|gb|EEQ09557.1| NADH-quinone oxidoreductase subunit F [Yersinia mollaretii ATCC
           43969]
          Length = 439

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 233/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 41  VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D ++
Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGSGFDFEL 160

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    IT  E++E + GG+R G   
Sbjct: 221 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 279

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 338

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 399 EPLQSAIKYFREEFEAGI 416


>gi|238751244|ref|ZP_04612738.1| NADH-quinone oxidoreductase subunit F [Yersinia rohdei ATCC 43380]
 gi|238710518|gb|EEQ02742.1| NADH-quinone oxidoreductase subunit F [Yersinia rohdei ATCC 43380]
          Length = 439

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 233/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 41  VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D ++
Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGSGFDFEL 160

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    IT  E++E + GG+R G   
Sbjct: 221 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 279

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 338

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 339 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 399 EPLQSAIKYFREEFEAGI 416


>gi|318606464|emb|CBY27962.1| NADH-ubiquinone oxidoreductase chain F [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 455

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 57  VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 116

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D ++
Sbjct: 117 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 176

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 177 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 236

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    IT  E++E + GG+R G   
Sbjct: 237 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 295

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 296 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 354

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 355 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGSGKTFCAHAPGAV 414

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 415 EPLQSAIKYFREEFEAGI 432


>gi|331658365|ref|ZP_08359327.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA206]
 gi|331056613|gb|EGI28622.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA206]
          Length = 421

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 24  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 83

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 84  LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 143

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G +G PT VNNVE++  VP 
Sbjct: 144 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPA 203

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 204 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 262

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 263 FKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 321

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 322 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 381

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 382 EPLQSAIKYFREEFEAGIKQ 401


>gi|268591139|ref|ZP_06125360.1| NADH oxidoreductase, F subunit [Providencia rettgeri DSM 1131]
 gi|291313365|gb|EFE53818.1| NADH oxidoreductase, F subunit [Providencia rettgeri DSM 1131]
          Length = 452

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 168/404 (41%), Positives = 242/404 (59%), Gaps = 7/404 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +  +++ L+    D ++N VK +GL+GRGGAGFSTG+KWS MPK  + +  
Sbjct: 30  LDEYRSKNGYKGLERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDENMKLR 89

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y + NADE EPGT KDR +M   PH L+EG +  ++A+ A+  +I++RGE++   ++L+ 
Sbjct: 90  YFLCNADEMEPGTYKDRLLMEQLPHLLVEGMITGAYALKAYRGYIFLRGEYVEAAQNLRR 149

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 150 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 209

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
             G +G PT VNNVE+I  VP IL  G  WY     G+  + GTKL   SG V  P   E
Sbjct: 210 TSGAWGKPTCVNNVETICNVPAILEHGDQWYIDLSAGKSKDAGTKLMGFSGRVKNPGLWE 269

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + GS L
Sbjct: 270 LPFGTTAREVLEDYAGGMRDGL-KLKAWQPGGAGTDFLTNDHL-DLPMDFENIAKAGSRL 327

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W +++++ L KG  Q  +I
Sbjct: 328 GTALAMAVDHEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQPGDI 387

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 388 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGISQ 431


>gi|157371541|ref|YP_001479530.1| NADH dehydrogenase I subunit F [Serratia proteamaculans 568]
 gi|157323305|gb|ABV42402.1| NADH-quinone oxidoreductase, F subunit [Serratia proteamaculans
           568]
          Length = 450

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 170/387 (43%), Positives = 232/387 (59%), Gaps = 6/387 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+  VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 49  DEIVTLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 108

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +G LG N    G+D 
Sbjct: 109 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGYLGKNIMGSGFDF 168

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP 
Sbjct: 169 ELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 228

Query: 220 ILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           IL  G  WY G   G+ N+ GTKL   SG V  P   E     T  E++E + GG+R G 
Sbjct: 229 ILANGVEWYKGISAGKSNDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL 288

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L 
Sbjct: 289 -RFKAWQPGGAGTDFLTADHLD-LPMDFESIGKAGSRLGTALAMAVDHEIGMVPLVRNLE 346

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L  G  Q  +I+ L ++ +++  G+T CA    
Sbjct: 347 EFFSRESCGWCTPCRDGLPWSVKILRALENGEGQPGDIETLEQLCRSLGPGKTFCAHAPG 406

Query: 397 AAWPIQGLIKNFRPLIEERIDQYHRCN 423
           A  P+Q  IK FR   E  I   H  N
Sbjct: 407 AVEPLQSAIKYFREEFEAGIKVKHFSN 433


>gi|332162385|ref|YP_004298962.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666615|gb|ADZ43259.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 455

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 57  VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 116

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D ++
Sbjct: 117 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 176

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 177 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 236

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    IT  E++E + GG+R G   
Sbjct: 237 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 295

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 296 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 354

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 355 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 414

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 415 EPLQSAIKYFREEFEAGI 432


>gi|123441680|ref|YP_001005664.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088641|emb|CAL11436.1| NADH dehydrogenase I chain F [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 456

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 168/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 57  VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 116

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D ++
Sbjct: 117 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGSGFDFEL 176

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 177 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 236

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    IT  E++E + GG+R G   
Sbjct: 237 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 295

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 296 FKAWQPGGAGTDFLTADHL-DLPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 354

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 355 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 414

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 415 EPLQSAIKYFREEFEAGI 432


>gi|238759966|ref|ZP_04621119.1| NADH-quinone oxidoreductase subunit F [Yersinia aldovae ATCC 35236]
 gi|238701793|gb|EEP94357.1| NADH-quinone oxidoreductase subunit F [Yersinia aldovae ATCC 35236]
          Length = 440

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 167/378 (44%), Positives = 232/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 41  VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 100

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D ++
Sbjct: 101 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAISEATEAGLLGKNIMGSGFDFEL 160

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 161 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 220

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    I+  E++E + GG+R G   
Sbjct: 221 EHGVDWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGISAREILEDYAGGMRDGL-K 279

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 280 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 338

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 339 FSRESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 398

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 399 EPLQSAIKYFREEFEAGI 416


>gi|293395174|ref|ZP_06639460.1| NADH dehydrogenase I subunit F [Serratia odorifera DSM 4582]
 gi|291422351|gb|EFE95594.1| NADH dehydrogenase I subunit F [Serratia odorifera DSM 4582]
          Length = 450

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 169/387 (43%), Positives = 231/387 (59%), Gaps = 6/387 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 49  DEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 108

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE++     L+ A+ E   +GLLG N    G+D 
Sbjct: 109 LPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAVHLRRAIAEATEAGLLGKNIMGSGFDF 168

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP 
Sbjct: 169 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLCNVPA 228

Query: 220 ILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           IL  G  WY G   G+ N+ GTKL   SG V  P   E     T  E++E + GG+R G 
Sbjct: 229 ILANGVDWYKGISAGKSNDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL 288

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L 
Sbjct: 289 -KFKAWQPGGAGTDFLTADHLD-LPMDFENIGKAGSRLGTALAMAVDHEIGMVPLVRNLE 346

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L  G  Q  +I+ L ++ + +  G+T CA    
Sbjct: 347 EFFARESCGWCTPCRDGLPWSVKILRALENGEGQPGDIETLEQLCRFLGPGKTFCAHAPG 406

Query: 397 AAWPIQGLIKNFRPLIEERIDQYHRCN 423
           A  P+Q  IK FR   E  I      N
Sbjct: 407 AVEPLQSAIKYFRDEFEAGIKVQQFSN 433


>gi|114567343|ref|YP_754497.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338278|gb|ABI69126.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 407

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 171/409 (41%), Positives = 245/409 (59%), Gaps = 11/409 (2%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + ++ RI    YG       DS ++ G +  + K     +  +I EVK SGLRGRGGAGF
Sbjct: 1   MAEEMRIVLRNYGKVDPLNIDSYTQVGGYQALAKAKSMSQTDLIEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +TGMKWSF   V +D+  Y++ NADE EPGT KDR IM ++P +++EG  I  +AIGA+ 
Sbjct: 61  NTGMKWSFSYGVKADQ-KYVICNADEGEPGTYKDRIIMENDPQSVLEGMAICGYAIGANK 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY RGE+    E L  A+ +    GLLG       D +I V  GAGAY+CGEE+AL+E
Sbjct: 120 GYIYCRGEYPYVVEILNKAIAQASEKGLLG-------DFNIEVRMGAGAYVCGEESALIE 172

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG +G+PR KPPFP  +GL+G PT VNNVE+ A +P I+ +GA WY G G     GTK
Sbjct: 173 SIEGHRGEPRFKPPFPPVIGLWGKPTIVNNVETFANIPAIVDKGADWYKGIGAAGYPGTK 232

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           + +++G +     +E   + T  ++++   GGI GG     AV  GG+S   +P   +  
Sbjct: 233 VMTLTGDIVNRTVIEVPTNTTIRQVLDDFGGGITGG-KKFKAVQIGGTSGGFIPESLLDT 291

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            I D+D +  +G+ LG+ A  VMD + DI+  I R+S F+ HESCG+CTPCREGT  M  
Sbjct: 292 PI-DFDSMSAIGATLGSGAFFVMDETRDIVDVIDRISKFFAHESCGKCTPCREGTQRMHE 350

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ R+  G A   ++D +  +   +    +C LG AA  P+   +K+FR
Sbjct: 351 MLHRVKNGGAVAGDLDYMERLGSVMSKACLCGLGQAAPAPVLTTLKHFR 399


>gi|294637175|ref|ZP_06715483.1| NADH oxidoreductase, F subunit [Edwardsiella tarda ATCC 23685]
 gi|291089639|gb|EFE22200.1| NADH oxidoreductase, F subunit [Edwardsiella tarda ATCC 23685]
          Length = 448

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 166/381 (43%), Positives = 232/381 (60%), Gaps = 6/381 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M 
Sbjct: 47  QDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 106

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH L+EG +I ++A+ A+  +I++RGE++     L+ A++E  A+GLLG N    G+D
Sbjct: 107 QLPHLLVEGMLIGAYALKAYRGYIFLRGEYVAAAHHLRRAIEEARAAGLLGKNILGSGFD 166

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP
Sbjct: 167 FDLFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPASAGVWGKPTCVNNVETLCNVP 226

Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  GA+WY G   G+  + GTKL   SG V  P   E     T  E++E + GG+R G
Sbjct: 227 AIIEHGAAWYQGLSAGKSQDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 286

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A  PGG+    L    +    MD+  + + GS LGTA  + +D   +++  +  L
Sbjct: 287 L-KLKAWQPGGAGTDFLTEAHL-DLPMDFASIGKAGSRLGTALAMAVDHEVNMVSLLCNL 344

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G T CA   
Sbjct: 345 ESFFARESCGWCTPCRDGLPWGLKILRALERGEGQPGDIETLEQLCRLLAPGHTFCAHAP 404

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            A  P+Q  IK FR   E  I
Sbjct: 405 GAVEPLQSAIKYFRDEFEAGI 425


>gi|157144785|ref|YP_001452104.1| NADH dehydrogenase I subunit F [Citrobacter koseri ATCC BAA-895]
 gi|157081990|gb|ABV11668.1| hypothetical protein CKO_00512 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|292488839|ref|YP_003531726.1| NADH dehydrogenase I subunit F [Erwinia amylovora CFBP1430]
 gi|292899990|ref|YP_003539359.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC 49946]
 gi|291199838|emb|CBJ46962.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC 49946]
 gi|291554273|emb|CBA21591.1| NADH dehydrogenase I chain F [Erwinia amylovora CFBP1430]
 gi|312172999|emb|CBX81254.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC BAA-2158]
          Length = 446

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 167/397 (42%), Positives = 239/397 (60%), Gaps = 5/397 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +   +K L+    D I++ VK SGL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 26  LDEYRSKNGYAGAEKALKTLTPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIR 85

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    +L+ 
Sbjct: 86  YLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRR 145

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E  A+GLLG N    G+D +++VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 146 AIAEATAAGLLGKNILGTGFDFELVVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + G++G PT VNNVE+++ VP IL  G  WY      ++ GTK+   SG V  P   E  
Sbjct: 206 SAGVWGKPTCVNNVETLSNVPAILANGVDWYKSISNSDDAGTKMMGFSGRVKNPGVWELP 265

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E++E++ GG+R G     A  PGG+    L   Q     M++  + + GS LGT
Sbjct: 266 FGTTAREILEEYAGGMRDGL-KFKAWQPGGAGTDFL-TEQHLDLPMEFASIGKAGSRLGT 323

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  +I+ 
Sbjct: 324 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERKEGQPGDIET 383

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
           L ++ + +  G+T CA    A  P+Q  IK FR   E
Sbjct: 384 LLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 420


>gi|212712280|ref|ZP_03320408.1| hypothetical protein PROVALCAL_03366 [Providencia alcalifaciens DSM
           30120]
 gi|212685026|gb|EEB44554.1| hypothetical protein PROVALCAL_03366 [Providencia alcalifaciens DSM
           30120]
          Length = 452

 Score =  312 bits (799), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 167/404 (41%), Positives = 243/404 (60%), Gaps = 7/404 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +  +++ L+    D ++N VK +GL+GRGGAGFSTG+KWS MPK  + +  
Sbjct: 30  LDEYRSKNGYKGLERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDENMKLR 89

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y + NADE EPGT KDR +M   PH L+EG +  ++A+ A+  +I++RGE++    +L+ 
Sbjct: 90  YFLCNADEMEPGTYKDRLLMEQLPHLLVEGMITGAYALKAYRGYIFLRGEYVEAARNLRR 149

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 150 AIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 209

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
           + G +G PT VNNVE+I  VP IL  G  WY     G+  + GTKL   SG V  P   E
Sbjct: 210 SSGAWGKPTCVNNVETICNVPAILEHGDQWYINLSAGKSKDAGTKLMGFSGRVKNPGLWE 269

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + GS L
Sbjct: 270 LPFGTTAREVLEDYAGGMRDGL-KLKAWQPGGAGTDFLTNDHL-DLPMDFENIAKAGSRL 327

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W +++++ L KG  Q+ +I
Sbjct: 328 GTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQEGDI 387

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + L ++ + +  G+T CA    A  P+Q  IK FR   E  I +
Sbjct: 388 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRGEFEAGISK 431


>gi|200387672|ref|ZP_03214284.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199604770|gb|EDZ03315.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 445

 Score =  312 bits (799), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 164/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I   + L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|311278759|ref|YP_003940990.1| NADH-quinone oxidoreductase, F subunit [Enterobacter cloacae SCF1]
 gi|308747954|gb|ADO47706.1| NADH-quinone oxidoreductase, F subunit [Enterobacter cloacae SCF1]
          Length = 445

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I++ VK SGL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DDIVSAVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I   ++L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQNLRRAIAEATEAGLLGKNILGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G +G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGAWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFRDEFEAGIKQ 425


>gi|237732315|ref|ZP_04562796.1| NADH dehydrogenase I subunit F [Citrobacter sp. 30_2]
 gi|283832286|ref|ZP_06352027.1| NADH oxidoreductase, F subunit [Citrobacter youngae ATCC 29220]
 gi|226907854|gb|EEH93772.1| NADH dehydrogenase I subunit F [Citrobacter sp. 30_2]
 gi|291071930|gb|EFE10039.1| NADH oxidoreductase, F subunit [Citrobacter youngae ATCC 29220]
          Length = 445

 Score =  311 bits (798), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 165/380 (43%), Positives = 228/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G +G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGAWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|89896716|ref|YP_520203.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
 gi|89336164|dbj|BAE85759.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
          Length = 597

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/418 (39%), Positives = 252/418 (60%), Gaps = 5/418 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q RI   N   +    L D ++   ++ + K L    + I+ EVK SGLRGRGGAG
Sbjct: 112 FFAKQTRIALKNCGFIDPTKLDDYLAHKGYEGLKKALTMAPEAIVEEVKESGLRGRGGAG 171

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           FSTG+KWS      SD+  Y++ NADE +PG   DR ++  +PH +IEG +I ++AIGA 
Sbjct: 172 FSTGLKWSLCRATPSDK-KYVICNADEGDPGAFMDRGLLEGDPHAIIEGMLIGAYAIGAD 230

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y R E+    ++LQ A+ +   +G LG+N    G++  + ++ GAGA++CGEETAL
Sbjct: 231 EGYVYCRAEYPLAIKNLQIAIKQAEEAGFLGNNILGSGFNFHLKINAGAGAFVCGEETAL 290

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR++PPFPA  GL+G PT +NNVE+ + +P ILR GA WY+ +G E ++G
Sbjct: 291 MASIEGKRGMPRVRPPFPAQSGLWGKPTNINNVETWSNIPHILRNGAQWYAQYGTEKSKG 350

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G VN    VE  M +   ++I    GGI+ G     AV  GG S  CLP   M
Sbjct: 351 TKIFALTGKVNNTGLVEVPMGMPLRDIIFDIGGGIKDG-KKFKAVQIGGPSGGCLPE-DM 408

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L + G+ +G+  +++MD +T ++        F + ESCG+CTPCREG   M
Sbjct: 409 LDLPVDYDTLTKAGAMVGSGGLVIMDETTCMVDIARFFLNFSQSESCGKCTPCREGNKRM 468

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +++R+ +G  ++ +I+ L  ++  ++  ++C LG  A  PI   +K FR   EE I
Sbjct: 469 WEILDRITRGEGREDDIEKLETLAYTVKETSLCGLGQNAPNPILATLKYFREEFEEHI 526


>gi|197264028|ref|ZP_03164102.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197242283|gb|EDY24903.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 445

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 164/380 (43%), Positives = 229/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G +Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGESQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|238763930|ref|ZP_04624887.1| NADH-quinone oxidoreductase subunit F [Yersinia kristensenii ATCC
           33638]
 gi|238697898|gb|EEP90658.1| NADH-quinone oxidoreductase subunit F [Yersinia kristensenii ATCC
           33638]
          Length = 445

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/378 (43%), Positives = 232/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 46  VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 105

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +G+LG N    G+D ++
Sbjct: 106 HLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGMLGKNIMGSGFDFEL 165

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 166 IVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIL 225

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+ N+ GTKL   SG V  P   E    I+  E++E + GG+R G   
Sbjct: 226 EHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWELPFGISAREILEDYAGGMRDGL-K 284

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 285 FKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRLGTALAMAVDHEIGMVPLVRNLEEF 343

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 344 FSRESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 403

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 404 EPLQSAIKYFREEFEAGI 421


>gi|85059575|ref|YP_455277.1| NADH dehydrogenase I subunit F [Sodalis glossinidius str.
           'morsitans']
 gi|84780095|dbj|BAE74872.1| NADH dehydrogenase I subunit F [Sodalis glossinidius str.
           'morsitans']
          Length = 451

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 171/390 (43%), Positives = 231/390 (59%), Gaps = 8/390 (2%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D I+  VK SGL+GRGGAGFSTG+KWS MPK  +    YL+ NADE EPGT KDR +M 
Sbjct: 48  QDDIVTLVKDSGLKGRGGAGFSTGLKWSLMPKDPAMNIRYLLCNADEMEPGTYKDRLLME 107

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH L+EG +IA+FA+ A+  +I++RGE+I    +L+ A+ E   +G LG N    G+D
Sbjct: 108 QLPHLLVEGMLIAAFALKAYRGYIFLRGEYIEAAANLRRAIAEATEAGWLGKNILGSGFD 167

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G +G PT VNNVE++  VP
Sbjct: 168 FELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAWGKPTCVNNVETLCNVP 227

Query: 219 TILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
            IL  G  WY G        N+ GTKL   SG V  P   E    IT  E++E + GG+R
Sbjct: 228 AILEHGVDWYQGITAGKSNSNDAGTKLMGFSGRVKNPGVWELPFGITAREILEDYAGGMR 287

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
            G   L A  PGG+    L    +    MD++ + + GS LGTA  + +D   +++    
Sbjct: 288 DGL-TLKAWQPGGAGTDFLIQDHLD-LPMDFENIGKAGSRLGTALAMAVDNEINMVSLTR 345

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICAL 393
            L  F+  ESCG CTPCR+G  W ++++  L  G  Q  +I+ L ++ + +  G+T CA 
Sbjct: 346 NLEEFFARESCGWCTPCRDGLPWSVKLLRALESGKGQPGDIETLEQLCRFLGPGKTFCAH 405

Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
              A  P+Q  IK FR   E  I   H  N
Sbjct: 406 APGAVEPLQSAIKYFRSEFEAGISVEHLGN 435


>gi|167949925|ref|ZP_02536999.1| NADH-quinone oxidoreductase, chain F [Endoriftia persephone
           'Hot96_1+Hot96_2']
 gi|110589392|gb|ABG77205.1| NADH dehydrogenase I ubiquinone reductase; F subunit 51 kDa
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 321

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 156/302 (51%), Positives = 207/302 (68%), Gaps = 4/302 (1%)

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+RGEF    E  +A ++E  A+GLLG +    G+D ++  H GAGAY+CGEETALLE
Sbjct: 15  YNYIRGEFWEPYERFEACLEEARAAGLLGEDLFGSGFDFELHAHLGAGAYVCGEETALLE 74

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGKKGQPR KPPFPA+ GLYG PT +NN ES+A +P IL +G  W++  G +N+ G+K
Sbjct: 75  SIEGKKGQPRFKPPFPAHFGLYGRPTIINNTESLASIPMILEKGGKWFADVGVKNSGGSK 134

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSISG++N P   E  M   F EL+E   GG++ G   + AVIPGGSS P +P   M  
Sbjct: 135 LFSISGNLNNPGVFEIPMGTPFSELLEM-AGGMKDG-RKIKAVIPGGSSSPVIPGEMMMD 192

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD +   GS LG+ AVIV+D +  +++ + R+S FY  ESCGQCTPCREGTGW+ R
Sbjct: 193 LTMDYDAIANAGSMLGSGAVIVLDDTNCMVRVLERMSYFYHEESCGQCTPCREGTGWLYR 252

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+  G   + ++DLL +V+  I GRTICALGDAAA P+QG++K FR   +  ID + 
Sbjct: 253 VVSRIENGKGCQEDLDLLDDVAAKIAGRTICALGDAAAMPVQGMLKYFRDEFQYHID-HQ 311

Query: 421 RC 422
           RC
Sbjct: 312 RC 313


>gi|304398212|ref|ZP_07380086.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. aB]
 gi|308187600|ref|YP_003931731.1| NADH dehydrogenase I chain F [Pantoea vagans C9-1]
 gi|304354078|gb|EFM18451.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. aB]
 gi|308058110|gb|ADO10282.1| NADH dehydrogenase I chain F [Pantoea vagans C9-1]
          Length = 448

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 167/397 (42%), Positives = 235/397 (59%), Gaps = 5/397 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +   +K L+   +D I+  VK SGL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 28  LDEYRSKNGYAGAEKALKSMSQDEIVAAVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIR 87

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I     L+ 
Sbjct: 88  YLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRR 147

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +G LG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 148 AIAEATEAGYLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 207

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + G +G PT VNNVE+++ VP IL  G  WY    +  + GTK+   SG V  P   E  
Sbjct: 208 SAGAWGKPTCVNNVETLSNVPAILANGVEWYKNISKSEDAGTKMMGFSGRVKNPGVWELP 267

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  E++E + GG+R G     A  PGG+    L   Q     M++  + + GS LGT
Sbjct: 268 FGITAREILEDYAGGMRDGL-KFKAWQPGGAGTDFL-TDQHLDLPMEFASIGKAGSRLGT 325

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  +I+ 
Sbjct: 326 ALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKQGQPGDIET 385

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
           L ++ + +  G+T CA    A  P+Q  IK FR   E
Sbjct: 386 LLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 422


>gi|62180894|ref|YP_217311.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128527|gb|AAX66230.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715373|gb|EFZ06944.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 445

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/380 (43%), Positives = 228/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|16765651|ref|NP_461266.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56412779|ref|YP_149854.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161502531|ref|YP_001569643.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161612948|ref|YP_001586913.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549677|ref|ZP_02343436.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167994672|ref|ZP_02575763.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229693|ref|ZP_02654751.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237341|ref|ZP_02662399.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168242442|ref|ZP_02667374.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168261660|ref|ZP_02683633.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465973|ref|ZP_02699843.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168817946|ref|ZP_02829946.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194443680|ref|YP_002041584.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451801|ref|YP_002046377.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469483|ref|ZP_03075467.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736167|ref|YP_002115393.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249657|ref|YP_002147282.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197361713|ref|YP_002141349.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198242534|ref|YP_002216394.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|204929246|ref|ZP_03220389.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205353439|ref|YP_002227240.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857742|ref|YP_002244393.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224583190|ref|YP_002636988.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912397|ref|ZP_04656234.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|20141542|sp|P33901|NUOF_SALTY RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|16420865|gb|AAL21225.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56127036|gb|AAV76542.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|160863878|gb|ABX20501.1| hypothetical protein SARI_00575 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161362312|gb|ABX66080.1| hypothetical protein SPAB_00654 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402343|gb|ACF62565.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194410105|gb|ACF70324.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455847|gb|EDX44686.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711669|gb|ACF90890.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195631228|gb|EDX49788.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197093189|emb|CAR58633.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213360|gb|ACH50757.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197289714|gb|EDY29077.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197937050|gb|ACH74383.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|204321790|gb|EDZ06989.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205273220|emb|CAR38183.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325480|gb|EDZ13319.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205327504|gb|EDZ14268.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335912|gb|EDZ22676.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205338467|gb|EDZ25231.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205344967|gb|EDZ31731.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205349424|gb|EDZ36055.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709545|emb|CAR33890.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467717|gb|ACN45547.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247530|emb|CBG25357.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994419|gb|ACY89304.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158882|emb|CBW18395.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913315|dbj|BAJ37289.1| NADH dehydrogenase subunit F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086758|emb|CBY96530.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322617070|gb|EFY13976.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617624|gb|EFY14523.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624746|gb|EFY21575.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630295|gb|EFY27065.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634476|gb|EFY31209.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639186|gb|EFY35878.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640049|gb|EFY36716.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645730|gb|EFY42254.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651506|gb|EFY47881.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656065|gb|EFY52364.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659418|gb|EFY55665.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665878|gb|EFY62061.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669882|gb|EFY66023.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673868|gb|EFY69965.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678626|gb|EFY74682.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683578|gb|EFY79592.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687654|gb|EFY83624.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323130655|gb|ADX18085.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323193512|gb|EFZ78717.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198417|gb|EFZ83519.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201931|gb|EFZ86993.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208531|gb|EFZ93470.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209760|gb|EFZ94684.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218296|gb|EGA03006.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222947|gb|EGA07296.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227382|gb|EGA11547.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232291|gb|EGA16394.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235675|gb|EGA19759.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241164|gb|EGA25200.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244906|gb|EGA28908.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250025|gb|EGA33919.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251637|gb|EGA35505.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254948|gb|EGA38739.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260328|gb|EGA43947.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268096|gb|EGA51573.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270811|gb|EGA54249.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624145|gb|EGE30490.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628531|gb|EGE34874.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989257|gb|AEF08240.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 445

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/380 (43%), Positives = 228/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|152971212|ref|YP_001336321.1| NADH dehydrogenase I subunit F [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206579298|ref|YP_002237328.1| NADH-quinone oxidoreductase, F subunit [Klebsiella pneumoniae 342]
 gi|238895801|ref|YP_002920537.1| NADH dehydrogenase I subunit F [Klebsiella pneumoniae NTUH-K2044]
 gi|262043324|ref|ZP_06016453.1| NADH dehydrogenase (quinone) [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934258|ref|YP_003438317.1| NADH-quinone oxidoreductase, F subunit [Klebsiella variicola At-22]
 gi|290508461|ref|ZP_06547832.1| NADH oxidoreductase (quinone), F subunit [Klebsiella sp. 1_1_55]
 gi|330003560|ref|ZP_08304675.1| NADH oxidoreductase, F subunit [Klebsiella sp. MS 92-3]
 gi|150956061|gb|ABR78091.1| NADH dehydrogenase I chain F [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206568356|gb|ACI10132.1| NADH-quinone oxidoreductase, F subunit [Klebsiella pneumoniae 342]
 gi|238548119|dbj|BAH64470.1| NADH dehydrogenase I chain F [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039348|gb|EEW40490.1| NADH dehydrogenase (quinone) [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888987|gb|ADC57305.1| NADH-quinone oxidoreductase, F subunit [Klebsiella variicola At-22]
 gi|289777855|gb|EFD85852.1| NADH oxidoreductase (quinone), F subunit [Klebsiella sp. 1_1_55]
 gi|328536900|gb|EGF63199.1| NADH oxidoreductase, F subunit [Klebsiella sp. MS 92-3]
          Length = 445

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/380 (42%), Positives = 228/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+  VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I   + L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQHLRRAIAEATEAGLLGKNILGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY       + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGT+  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTSLAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|253989004|ref|YP_003040360.1| NADH dehydrogenase I subunit F [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780454|emb|CAQ83616.1| nadh dehydrogenase i chain f (nadh-ubiquinone oxidoreductase chain
           6 (nuo6) [Photorhabdus asymbiotica]
          Length = 454

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 165/378 (43%), Positives = 231/378 (61%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 56  VVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQLP 115

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE++     L+ A++E  A+GLLG N    G+D ++
Sbjct: 116 HLLVEGMLISAFALKAYRGYIFLRGEYVEAAVHLRKAIEEAKAAGLLGKNIMGSGFDFEL 175

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP+IL
Sbjct: 176 FVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPSIL 235

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+  + GTKL   SG V  P   E    IT  E++E + GG+R G   
Sbjct: 236 EYGKEWYIGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGITAREILEDYAGGMRDGL-K 294

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L A  +    MD++ + + GS LGTA  + +D   +++     L  F
Sbjct: 295 FKAWQPGGAGTDFLTAEHL-DLPMDFENIAKAGSRLGTALAMAVDHEINMVSLTRNLEEF 353

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  + +G  Q  +I+ L ++ + +  G T CA    A 
Sbjct: 354 FSRESCGWCTPCRDGLPWSVKILRAIERGEGQPGDIETLEQLCRFLGPGNTFCAHAPGAV 413

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+Q  IK FR   E  I
Sbjct: 414 EPLQSAIKYFRDEFEAGI 431


>gi|304413375|ref|ZP_07394848.1| NADH:ubiquinone oxidoreductase, chain F [Candidatus Regiella
           insecticola LSR1]
 gi|304284218|gb|EFL92611.1| NADH:ubiquinone oxidoreductase, chain F [Candidatus Regiella
           insecticola LSR1]
          Length = 455

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 167/386 (43%), Positives = 234/386 (60%), Gaps = 6/386 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +GL+GRGGAGF TG+KWS MPK  S    YL+ NADE EPGT KDR +M   P
Sbjct: 49  VVDVVKNAGLKGRGGAGFPTGLKWSLMPKDDSINIRYLLCNADEMEPGTYKDRLLMEQLP 108

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +I +FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D ++
Sbjct: 109 HLLIEGMLIGAFALKAYRGYIFLRGEYIEAAVRLRQAISEAKGAGLLGKNILGSGFDFEL 168

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP IL
Sbjct: 169 FVHTGAGRYICGEETALINSLEGRRANPRAKPPFPASSGVWGRPTCVNNVETLCNVPAIL 228

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            +G  WY G   G+ N+ GTKL   SG V  P   E    IT  E++E + GG+  G   
Sbjct: 229 EQGVDWYQGITAGKSNDAGTKLMGFSGRVKNPGVWELPFGITAREILEDYAGGMCDGL-K 287

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A  PGG+    L A  +    MD++ + + GS LGTA  + +D   +++     L  F
Sbjct: 288 LKAWQPGGAGTDFLTADHLD-LPMDFEHIGKAGSRLGTALAMAVDHQINMVSLTRNLEEF 346

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W +++++ L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 347 FARESCGWCTPCRDGLPWSVKILQALERGEGQPGDIETLEQLCRLLGPGKTFCAHAPGAV 406

Query: 399 WPIQGLIKNFRPLIEERIDQYHRCNF 424
            P+Q  IK FR      I   ++ +F
Sbjct: 407 EPLQSAIKYFRDEFAAGIAPKYQGHF 432


>gi|320354225|ref|YP_004195564.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122727|gb|ADW18273.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 617

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 161/424 (37%), Positives = 253/424 (59%), Gaps = 6/424 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
           M+  Q RI     G+    ++   +++G +  + +    G + +I E+KASGLRGRGGAG
Sbjct: 132 MIQPQVRIVLRNCGIIDPTNIDHYLAQGGYSGMARAFSLGPEQVIEEMKASGLRGRGGAG 191

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F     +D+  Y++ NADE +PG   DR ++  +PH ++EG +IA +AIGA 
Sbjct: 192 FPTGVKWGFARSSVADQ-KYVICNADEGDPGAFMDRSVLEGDPHAVLEGLLIAGYAIGAT 250

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y R E+    E LQ A+ +    G LG+N    G+D DI +  GAGA++CGEET+L
Sbjct: 251 VGYVYCRAEYPLAIERLQDAIAQMREQGFLGANILGSGFDFDIKIKKGAGAFVCGEETSL 310

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           ++S+EGK+G P  KPPFPA  GL+G PT +NNVE++A V  I+ +GA+WY+GFG E +RG
Sbjct: 311 MQSIEGKRGMPLSKPPFPAVSGLFGKPTNINNVETLAAVSAIMEKGAAWYAGFGTEKSRG 370

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK F+++G +     +E  M I    +I++  GG+ GG     AV  GG S  C+PA Q 
Sbjct: 371 TKTFALAGKITRTGLIEVPMGIRLRTIIDEVGGGVLGG-KPFKAVQTGGPSGGCIPA-QF 428

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ L  +GS +G+  +IV+D  + ++        F ++ESCG+C PCR GT  +
Sbjct: 429 IDLEVDYEHLASVGSIMGSGGMIVIDAESCMVDMARYFLTFTENESCGKCVPCRMGTQHL 488

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +R++  + +G     ++D L ++   ++  ++C LG  AA P+   ++ F       I+ 
Sbjct: 489 LRILTGITQGKGTLDQLDTLRKIGDTMKSASLCGLGQTAANPVLTTLQYFEEEYRAHIED 548

Query: 419 YHRC 422
            H+C
Sbjct: 549 -HKC 551


>gi|300717647|ref|YP_003742450.1| NADH dehydrogenase I chain F [Erwinia billingiae Eb661]
 gi|299063483|emb|CAX60603.1| NADH dehydrogenase I chain F [Erwinia billingiae Eb661]
          Length = 448

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 166/395 (42%), Positives = 233/395 (58%), Gaps = 5/395 (1%)

Query: 25  SRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           S+  +   DK L+   +D I+  VK SGL+GRGGAGFSTG+KWS MPK  S    YL+ N
Sbjct: 33  SKNGYAGADKALKTMSQDEIVAAVKDSGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCN 92

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADE EPGT KDR +M   PH L+EG +I++FA+  +  +I++RGE+I    +L+ A+ E 
Sbjct: 93  ADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKTYRGYIFLRGEYIEAAVNLRRAIAEA 152

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
             +G LG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G +
Sbjct: 153 TEAGYLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAW 212

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           G PT VNNVE+++ VP IL  G  WY G    ++ GTK+   SG V  P   E     T 
Sbjct: 213 GKPTCVNNVETLSNVPAILANGVDWYKGISTSDDTGTKMMGFSGRVKNPGVWELPFGTTA 272

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            E++E + GG+R G     A  PGG+    L    +    M++  + + GS LGTA  + 
Sbjct: 273 REILEDYAGGMRDGL-KFKAWQPGGAGTDFLTESHL-DLPMEFASIGKAGSRLGTALAMA 330

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  +I+ L ++ 
Sbjct: 331 VDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERKEGQPGDIETLLQLC 390

Query: 383 KNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 391 RQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 425


>gi|77917824|ref|YP_355639.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77543907|gb|ABA87469.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 425

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 179/430 (41%), Positives = 254/430 (59%), Gaps = 11/430 (2%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWII-NEVKASGLRGRGGAG 59
           M T +  +F N    Q   L      G +  + K L+      +  EVKASGLRGRGGAG
Sbjct: 1   MRTCEPLLFKNRRAGQTVFLEGYRKTGGYRGLQKALQDMTPASVREEVKASGLRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWSF P   +    YLV N DE EPGT KDR ++  +PH L+EG +I+ +A+G  
Sbjct: 61  FPTGVKWSFFPSDNAGE-KYLVCNGDEMEPGTFKDRQLLLADPHHLLEGVIISCYALGIG 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
            A+I++R  + +   +L+ A+ E   +GLLG N    G+  ++ VH  AG YICGEETAL
Sbjct: 120 TAYIFLRDAYRQCAANLERAIAEAEEAGLLGDNILGSGFCCEVHVHRSAGRYICGEETAL 179

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNR 237
           L SLEG +  PR KPPFPA  GL+G PT +NN+E++A +P I+  GA+WY G    E   
Sbjct: 180 LNSLEGLRPNPRSKPPFPAVKGLFGKPTALNNIETLANIPHIITGGAAWYKGLALTEQGA 239

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN--LLAVIPGGSSVPCLPA 295
           GTKL+ ++GH+  PC VE  + +   ELI    GG+   W N    A +PGG+S P L A
Sbjct: 240 GTKLYGLAGHLETPCCVELPLGMPLGELIRDFGGGV---WQNRSFKACLPGGASTPYLTA 296

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             M  A +DY+ L+++G+ LGT  V+V D  T ++     L  F+  ESCG CTPCR+G 
Sbjct: 297 EHMDVA-LDYEPLEQVGTRLGTGGVVVFDDRTCMVAVTLNLLRFFARESCGWCTPCRDGL 355

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             +  ++ERL +G   + ++ +L E   +I GR+ CAL   A  P+ GL+++F   +E+ 
Sbjct: 356 PLVCWLLERLERGEGSREDLAMLREQLLHINGRSFCALALGAMGPVDGLLRHFAEELEDH 415

Query: 416 IDQYHRCNFQ 425
           + +  RC FQ
Sbjct: 416 V-RLGRCPFQ 424


>gi|110806247|ref|YP_689767.1| NADH dehydrogenase I subunit F [Shigella flexneri 5 str. 8401]
 gi|110615795|gb|ABF04462.1| NADH dehydrogenase I chain F [Shigella flexneri 5 str. 8401]
          Length = 445

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 163/380 (42%), Positives = 228/380 (60%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICG+ETAL+  LEG +  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGDETALINFLEGHRAYPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|85858941|ref|YP_461143.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85722032|gb|ABC76975.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 607

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 162/418 (38%), Positives = 242/418 (57%), Gaps = 6/418 (1%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           R+  N+  +   S+   +  G ++   K   E   + +I  VK SGLRGRGGAGF  G+K
Sbjct: 182 RLLENVGKVDPASIESYLQNGGYEAARKAFAEYSPEQVIGIVKDSGLRGRGGAGFPVGVK 241

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSF+PK   +   Y++ NADE EPGT KDR +M   P  LIEG ++  +AIGA   +IYV
Sbjct: 242 WSFVPK--GEMQKYVICNADEGEPGTFKDRVLMEENPQQLIEGMLLCGYAIGATLGYIYV 299

Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGE+ R  E LQ+A+D+  A G LG       +D DI V  G GAY+CGEET+L+ S+EG
Sbjct: 300 RGEYRRSIERLQSAIDQARAKGFLGKKIFGSNFDFDIFVKEGGGAYVCGEETSLINSMEG 359

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+G PR++PPFPA  G  G P+ VNNVE+++ +P I+ RGA W+   G     GTKL+ +
Sbjct: 360 KRGYPRVRPPFPAAAGFMGMPSNVNNVETLSSIPMIVARGADWFKSVGTATCAGTKLYCL 419

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG VN    VE  M  T  ++I+   GG++ G     A + G +    +    +    +D
Sbjct: 420 SGKVNQTGLVELPMGATLRQMIDTFGGGMKSGSSFKFAQVGGAAGG--ILGADLMDLPLD 477

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
            D   + G  LG+  V+V D+ T  +  +  +  F++HESCGQC PC+ GT  +  V ++
Sbjct: 478 IDSTIKAGVTLGSGVVLVCDQETCAVDFLLNVLNFFEHESCGQCIPCKLGTSQLHYVAQK 537

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
                A++++I L+ + +K ++  ++CALG +   PI+ +I+NFR    +  D  + C
Sbjct: 538 FAMREAEEKDIQLMIDTAKMMKLASLCALGQSPILPIETMIRNFREEFVKHCDPDYEC 595


>gi|37526973|ref|NP_930317.1| NADH dehydrogenase I subunit F [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786406|emb|CAE15459.1| NADH dehydrogenase I chain F (NADH-ubiquinone oxidoreductase chain
           6) (NUO6) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 454

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 169/402 (42%), Positives = 239/402 (59%), Gaps = 7/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +   +K L+    D +++ VK +GL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 32  LDEYRSKSGYRGAEKALKSMSPDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 91

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE++     L+ 
Sbjct: 92  YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAVHLRK 151

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 152 AIEEAKAAGLLGKNIMGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 211

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
             G +G PT VNNVE++  VP+IL  G  WY G   G+  + GTKL   SG V  P   E
Sbjct: 212 TSGAWGKPTCVNNVETLCNVPSILEYGKEWYIGLSAGKSKDAGTKLMGFSGRVKNPGLWE 271

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E + GG+R G     A  PGG+    L A  +    MD++ + + GS L
Sbjct: 272 LPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTAEHL-DLPMDFENIAKAGSRL 329

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  + +G  Q  +I
Sbjct: 330 GTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIERGEGQPGDI 389

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + L ++ + +  G T CA    A  P+Q  IK FR   E  I
Sbjct: 390 ETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGI 431


>gi|163751850|ref|ZP_02159065.1| NADH dehydrogenase I, F subunit [Shewanella benthica KT99]
 gi|161328266|gb|EDP99428.1| NADH dehydrogenase I, F subunit [Shewanella benthica KT99]
          Length = 458

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 165/412 (40%), Positives = 243/412 (58%), Gaps = 12/412 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRP 77
            LS+ +S G +D + + +E   D +++ +K S LRGRGGAGF TG+KWSF+P+   + R 
Sbjct: 20  QLSEYLSHGGYDGLTRAMEMSADELLDSIKQSNLRGRGGAGFPTGLKWSFVPRGADAPRE 79

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+VNADE EPG  KDR ++   PH +IEG +I    +GA   +I++RG++    E LQ
Sbjct: 80  KYLIVNADEMEPGAFKDRWLLEQTPHQIIEGLLIGGLTLGATQGYIFLRGDYYLAEERLQ 139

Query: 138 AAVDECYASGLLGSN------SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
            A++EC    LLG +          ++ +I +H  AG YICGEETAL+ ++EGK+  PR 
Sbjct: 140 QAIEECKQHQLLGRDILGRGIQGQAFNFEIHLHSSAGRYICGEETALINAMEGKRATPRA 199

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFP  VGL+G PT VNNVE+   +P I+  G+ W+   G+  + GTK+F +SG V  P
Sbjct: 200 KPPFPQVVGLWGKPTIVNNVETFCNLPHIINFGSDWFKALGKGQDAGTKIFGVSGRVKRP 259

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M  +  E+IE H GG+  G+  L   +PGG S   L    +  A+MDYD + ++
Sbjct: 260 GLWELPMGTSIREIIEHHAGGMCDGY-RLKGFLPGGGSTDFLLEEHL-DALMDYDEISKL 317

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS +GT  +I++D     +  +  L  F+  ESCG CTPCR+G  W + ++E++ +G  +
Sbjct: 318 GSRMGTGTIIILDDKYCPVSMVLNLVRFFAQESCGWCTPCRDGLPWAVSLLEKIERGEGE 377

Query: 372 KREIDLLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            ++ID L ++      G T CAL   A  P+Q  +K FR   E  I   H+C
Sbjct: 378 PKDIDQLEDLCDFAAPGNTFCALAPGAVEPLQSALKYFRQDFETHIK--HQC 427


>gi|114566555|ref|YP_753709.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337490|gb|ABI68338.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 407

 Score =  309 bits (791), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 169/408 (41%), Positives = 242/408 (59%), Gaps = 11/408 (2%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + ++ RI    YG +    + D ++ G + +++K     +  +I EVK S LRGRGGAGF
Sbjct: 1   MAEEMRIVLRNYGKIDPLKIDDYIAAGGYKSLEKARSMKQTEVIEEVKKSNLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           + GMKW+F  +V S+   Y+V NADE EPGT KDR IM ++P ++IEG  I  +AIG+  
Sbjct: 61  NAGMKWNFSYQVQSEE-KYVVCNADEGEPGTYKDRIIMENDPQSVIEGMAICGYAIGSKK 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY RGE+    + L  A+ +  A G+LG       D D+ V  G GAY+CGEE+AL+E
Sbjct: 120 GYIYCRGEYPYVVDILNQAIAQAKAKGVLG-------DFDVEVRMGGGAYVCGEESALIE 172

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG +G+PR KPPFP  +GL+  PT VNNVE+ A +P I+ +G  WY   G  N  GTK
Sbjct: 173 SIEGHRGEPRFKPPFPPVIGLWQKPTIVNNVETFANIPIIIEKGGDWYKAIGAPNYPGTK 232

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           + +++G VN     E   + T  E+I     G   G     AV  GG+S   +P   +  
Sbjct: 233 VLTLTGDVNNRTFFEVPTNTTIREVIFGLG-GGVAGGKKFKAVQIGGTSGGFIPESNLDT 291

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            I D+D +  +G+ LG+ AV VMD S DI+  + R++ F++HESCG+C+PCREGT  M  
Sbjct: 292 PI-DFDSMNSIGAVLGSGAVFVMDESRDIVNVVARIAKFFEHESCGKCSPCREGTKRMHE 350

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G     +++LL  + K +    +C LG AA  P+   IKNF
Sbjct: 351 MMERLNAGEGNAEDVELLGRLGKVMSVACLCGLGQAAPAPVLTTIKNF 398


>gi|168700382|ref|ZP_02732659.1| NuoF2 NADH I CHAIN F [Gemmata obscuriglobus UQM 2246]
          Length = 455

 Score =  308 bits (790), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 183/422 (43%), Positives = 260/422 (61%), Gaps = 26/422 (6%)

Query: 27  GHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           G ++ + ++L+  +   +  +VK +GLRGRGGAGF TG+KW+F+PK     P YL VNAD
Sbjct: 26  GGYETIARVLKDKQPLDVTTQVKDAGLRGRGGAGFPTGLKWTFLPKD-HPGPVYLCVNAD 84

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEP T  +R +M  +PH ++EG ++A +AI +  AF YVR E+     SL AAV+E YA
Sbjct: 85  ESEPCTYNNRILMEKDPHQVLEGIMLACYAIKSPKAFYYVRYEYGDSYRSLAAAVEELYA 144

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G LG       +D+DI++H GAGAYICGEET L+ESLEGK+  PR+KPPFPA  G +  
Sbjct: 145 AGFLGKGIFGSSFDLDIVLHRGAGAYICGEETGLIESLEGKRAWPRIKPPFPAIEGAFRK 204

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFG----RENNR-----GTKLFSISGHVNYPCTVE 255
           PT VNNVE++A V  I++RG  W+   G     +N R     G KL++++GHV     VE
Sbjct: 205 PTIVNNVETLACVTQIMKRGKEWFQSLGVPPDPKNPRDAGSYGPKLYTLAGHVEKSVCVE 264

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGA--------IMDYD 306
             M IT  +L+EKH GG+  G     AV PGG S+  +     ++G          +D++
Sbjct: 265 VPMGITIRDLVEKHGGGVWKG-RKAKAVNPGGLSMGFVDVNAPLKGEDGKTEYDIPLDFN 323

Query: 307 GLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           G   +   GLGTAAV V+D  T ++  +  +  F+ HESCGQCTPCREGTGWM+++ +RL
Sbjct: 324 GPGRVQCLGLGTAAVTVIDDQTSMVDVLHNVCQFFSHESCGQCTPCREGTGWMLKITDRL 383

Query: 366 VKGIAQKREIDLLYEVSKNI---EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +G+ +K ++D+L +V+  I    G TIC L D A WP++  I+ FR   E  I    + 
Sbjct: 384 RRGLGRKEDLDILVDVADRIGIMPGTTICGLSDGAGWPVKTAIRKFRAEFEAAIKSGAKS 443

Query: 423 NF 424
            +
Sbjct: 444 KY 445


>gi|16761249|ref|NP_456866.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141055|ref|NP_804397.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052940|ref|ZP_03345818.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417788|ref|ZP_03350900.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427014|ref|ZP_03359764.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213647300|ref|ZP_03377353.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289829696|ref|ZP_06547237.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25285050|pir||AB0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503548|emb|CAD07556.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136681|gb|AAO68246.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 445

 Score =  308 bits (790), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 163/380 (42%), Positives = 227/380 (59%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E        E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|157736572|ref|YP_001489255.1| NADH-quinone oxidoreductase, F subunit [Arcobacter butzleri RM4018]
 gi|157698426|gb|ABV66586.1| NADH-quinone oxidoreductase, F subunit [Arcobacter butzleri RM4018]
          Length = 416

 Score =  308 bits (790), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 166/391 (42%), Positives = 242/391 (61%), Gaps = 4/391 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L  +++ G + ++DK+     + +  EV  SGLRG+GG G + G KW  MP V  +RP Y
Sbjct: 18  LEVALANGRYSSIDKLFTMKPEEVTAEVTKSGLRGKGGGGAACGPKWELMPPV-DERPRY 76

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+VN DESEPGT KDR I +++PH LIEG +   +AI A+ A+IY+RGE+    + L  A
Sbjct: 77  LIVNGDESEPGTFKDRQIFQYDPHILIEGIICTCWAIQANHAYIYIRGEYKFFIDRLNEA 136

Query: 140 VDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           + E Y + ++G     K  + VDI VH G GAYICGE++AL+ESLEGK+G PRLKP    
Sbjct: 137 IKEAYEAKIIGDKIMDKYDFKVDITVHRGGGAYICGEKSALIESLEGKRGHPRLKPHGKE 196

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
               +  P TVNNVE+I+ VP I+  GA  Y+ +G E + GT LF+ISG V  P   E +
Sbjct: 197 CEWFFDNPATVNNVETISSVPNIVENGAEGYTKYGTEKSPGTMLFAISGPVKNPGVYEMA 256

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
                 + +    GG+  G   L A+IPGGSS P L A ++  A++DY+ + E+GS LGT
Sbjct: 257 YGNKMIDFLNVLGGGMLEG-KKLKAIIPGGSSCPILTASEVEKAVLDYESMWEIGSTLGT 315

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             +IV+D  T +++    +  FY HESCGQCTPCREGTGW+ +++++++ G A  +++  
Sbjct: 316 GGMIVIDEDTSMVEVAKNIIEFYHHESCGQCTPCREGTGWIDKILKKVIAGEASDKDLKT 375

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + +V   + G+T+C    A    I  ++K F
Sbjct: 376 IMDVCDTLNGKTVCVFAPAVKDIIASIVKKF 406


>gi|213853108|ref|ZP_03382640.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 436

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 163/380 (42%), Positives = 227/380 (59%), Gaps = 4/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E        E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+Q  IK FR   E  I Q
Sbjct: 406 EPLQSAIKYFREEFEAGIKQ 425


>gi|154249673|ref|YP_001410498.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154153609|gb|ABS60841.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 539

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 164/418 (39%), Positives = 245/418 (58%), Gaps = 6/418 (1%)

Query: 5   QDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           + RI T N+  +  +++ + ++R  +  + K L+   + +I E+K SGLRGRGGAGF TG
Sbjct: 106 ETRIVTRNIGVIDPRNIDEYIARDGYFALSKALKMTPEEVIKEIKDSGLRGRGGAGFPTG 165

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW F  K  +D+  Y+V NADE EPGT KDR IM  +PH++IE  +IA +A+GA   +I
Sbjct: 166 LKWEFTAKTKADQ-KYIVCNADEGEPGTFKDRLIMEGDPHSVIEAMIIAGYAVGATKGYI 224

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE+    E+L+ A+ + Y  G LG +    G++ D+ V  GAGAY+CGEETALLES+
Sbjct: 225 YIRGEYYNSVENLKKAIKDAYEYGFLGEDILGSGFNFDLTVRLGAGAYVCGEETALLESI 284

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK G+PRLKPP+P   GL+G PT +NNVE++A VP I+  GA W+   G  N+ GTK+F
Sbjct: 285 EGKSGRPRLKPPYPPQSGLFGKPTVINNVETLANVPQIILNGAQWFRSIGTPNSPGTKVF 344

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            + G VN    VE  M +T  E++  +  G        L ++  G               
Sbjct: 345 CLVGDVNRRGMVELPMGVTVREVL--YGFGGGVKGGRELKMVQTGGLAGTFIGPDKLDVP 402

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DYD +K  G  LG+  ++ +D S  ++        F++HESCG+CTPCREGT     ++
Sbjct: 403 LDYDSMKNYGVSLGSGVILAIDDSHCVVDIALNTMEFFRHESCGKCTPCREGTRLACEIL 462

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQY 419
           E++ K  A   ++  L +++      + C LG +   P+  LI NF+   I+   D+Y
Sbjct: 463 EKMTKFEATMDDLKYLEQIAILSADASFCGLGQSINVPLLSLINNFKEEFIQHIKDKY 520


>gi|307069590|ref|YP_003878067.1| putative NADH:ubiquinone oxidoreductase, chain F [Candidatus
           Zinderia insecticola CARI]
 gi|306482850|gb|ADM89721.1| putative NADH:ubiquinone oxidoreductase, chain F [Candidatus
           Zinderia insecticola CARI]
          Length = 431

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 159/408 (38%), Positives = 244/408 (59%), Gaps = 11/408 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
            + + + RG +  + +I+     ++ IIN +K + LRGRGGAGF T +KW+F+ K  +  
Sbjct: 23  KIKNYIKRGGYKTIRRIIRNKISKNEIINNLKLTRLRGRGGAGFLTWIKWNFIDK-NTYY 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YL+ N DE EPGT KD  I  + PH +IEG +IA++ +     + Y+ GE  +     
Sbjct: 82  QKYLICNTDEGEPGTFKDLQITINNPHLIIEGMLIAAYTLNIDIGYNYIHGEVFKIYNIF 141

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + AV E Y    LG N  K   + ++    G G+YICGEE+AL+ES+EGKKGQPR KPPF
Sbjct: 142 KKAVLEAYKYNFLGYNIFKSKINFNLYCFRGYGSYICGEESALIESIEGKKGQPRFKPPF 201

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PAN+GL+   T +NN E+ + +  +L+ G   Y  F    N GTK+FSI+G++  P   E
Sbjct: 202 PANIGLFNKSTLINNAETFSNITILLKIGIKKYLNFSNSKNGGTKIFSITGNIKKPGNYE 261

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + I+  +LI K  GG +    +L A+IPGG S P +   +++   MDYD + +  S L
Sbjct: 262 APLGISLSKLI-KLAGGFK---KDLKAIIPGGISTPIIKGKKLKYIYMDYDEILKFKSML 317

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ A+I+++    I+K +  +S FY  ESCG+C PCREG  W+M++++++    A+ +++
Sbjct: 318 GSGAIILINNKICILKCLLNISNFYYKESCGKCVPCREGIIWIMKLLKKIKNNKAKLKDL 377

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKN-FRPLIEERIDQYHRC 422
           DL+  +  NI G TICA GDA  + I+  IKN ++  I   I  Y++C
Sbjct: 378 DLILSIINNITGNTICAFGDAIYFSIKSYIKNYYKEFILHII--YNKC 423


>gi|315635735|ref|ZP_07890998.1| NADH-quinone oxidoreductase subunit F [Arcobacter butzleri JV22]
 gi|315480032|gb|EFU70702.1| NADH-quinone oxidoreductase subunit F [Arcobacter butzleri JV22]
          Length = 416

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 165/391 (42%), Positives = 242/391 (61%), Gaps = 4/391 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L  +++ G + ++DK+     + +  EV  SGLRG+GG G + G KW  MP V  +RP Y
Sbjct: 18  LEVALANGRYSSIDKLFTMKPEEVTAEVTKSGLRGKGGGGAACGPKWELMPPV-DERPRY 76

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+VN DESEPGT KDR I +++PH LIEG +   +AI A+ A+IY+RGE+    + L  A
Sbjct: 77  LIVNGDESEPGTFKDRQIFQYDPHILIEGIICTCWAIQANHAYIYIRGEYKFFIDRLNEA 136

Query: 140 VDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           + E Y + ++G     K  + VDI VH G GAYICGE++AL+ESLEGK+G PRLKP    
Sbjct: 137 IKEAYEAKIIGDKIMDKYDFKVDITVHRGGGAYICGEKSALIESLEGKRGHPRLKPHGKE 196

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
               +  P TVNNVE+I+ VP I+  GA  Y+ +G E + GT LF+ISG V  P   E +
Sbjct: 197 CEWFFDNPATVNNVETISSVPNIVENGAEGYTKYGTEKSPGTMLFAISGPVKNPGVYEMA 256

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
                 + +    GG+  G   L A+IPGGSS P L A ++  A++DY+ + ++GS LGT
Sbjct: 257 YGNKMIDFLNVLGGGMIDG-KKLKAIIPGGSSCPILTASEVEKAVLDYESMWDIGSTLGT 315

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             +IV+D  T +++    +  FY HESCGQCTPCREGTGW+ +++++++ G A  +++  
Sbjct: 316 GGMIVIDEDTSMVEVAKNIIEFYHHESCGQCTPCREGTGWIDKILKKVIAGEASDKDLKT 375

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + +V   + G+T+C    A    I  ++K F
Sbjct: 376 IMDVCDTLNGKTVCVFAPAVKDIIASIVKKF 406


>gi|170727208|ref|YP_001761234.1| NADH-quinone oxidoreductase subunit F [Shewanella woodyi ATCC
           51908]
 gi|169812555|gb|ACA87139.1| NADH-quinone oxidoreductase, F subunit [Shewanella woodyi ATCC
           51908]
          Length = 454

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/403 (40%), Positives = 232/403 (57%), Gaps = 5/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRP 77
           S+    + G +    K L + ++ +++ +K S LRGRGGAGF TG+KWSF+P+   +  P
Sbjct: 22  SIEQYQNHGGYQGFRKSLTQSQEQLLDTLKESNLRGRGGAGFPTGLKWSFVPRGDDAPSP 81

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+VNADE EPGT KDR +M   PH +IEG +I +  +GA   ++++RG++    E + 
Sbjct: 82  RYLIVNADEMEPGTFKDRMLMEKTPHQIIEGLLIGAQTLGASIGYVFLRGDYYLAEERMT 141

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ EC  + LLG N    G D DI +H  AG YICGEETAL+ S+EGK+  PR KPPFP
Sbjct: 142 KALQECRDANLLGKNILGSGLDFDIHLHTSAGRYICGEETALINSMEGKRANPRAKPPFP 201

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT VNNVE+   +P I+  G  W+   G  ++ GTK+F +SG V  P   E 
Sbjct: 202 QVAGLWGKPTIVNNVETFCNLPHIINFGPIWFKELGLNDDAGTKIFGVSGRVKRPGLWEL 261

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M     E+IE+H GG+  G+  L   +PGG S   L    +    MDYD + + GS +G
Sbjct: 262 PMGTPIREIIEQHAGGMCDGY-TLKGFLPGGGSTDFLVTEHLD-IPMDYDTIGKQGSRMG 319

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T  +I++D     +  +  L  F+  ESCG CTPCR+G  W   ++E++ +G  +  +I 
Sbjct: 320 TGTIIILDDRYCPVAMVLNLIKFFAQESCGWCTPCRDGLPWAQVLLEKIERGEGEPEDIT 379

Query: 377 LLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            L E+ +    G T CAL   A  P+Q  +K FR   E  I Q
Sbjct: 380 QLEELCRFAAPGNTFCALAPGAVEPLQSALKYFREDFEAHISQ 422


>gi|206900196|ref|YP_002251393.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
 gi|206739299|gb|ACI18357.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
          Length = 545

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 167/406 (41%), Positives = 245/406 (60%), Gaps = 8/406 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ + +++G ++ + K L E   + +I E+KASGLRGRGGAGF  G+KW F  KV SD 
Sbjct: 128 ESIEEYIAQGGFEGLSKALSEMTPENVIKEIKASGLRGRGGAGFPAGLKWEFTYKVPSDE 187

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V NADE EPGT KDR I+  +P  ++E   IA +AIGA   +IY+RGE+    + +
Sbjct: 188 -KYVVCNADEGEPGTFKDRLILEGDPFRIVEAMAIAGYAIGAKKGYIYIRGEYKLSIDRM 246

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           Q A++     GLLG N  LG  +  D+ V  GAGAYICGEETAL+ESLEGK+G PR+KPP
Sbjct: 247 QKAINVAKEYGLLGDNI-LGTNFSFDLEVRKGAGAYICGEETALIESLEGKRGIPRIKPP 305

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           +P + GL   PT VNNVE++A VP I++ GA W+  FG E+  GTK+++I G V     +
Sbjct: 306 YPVSQGLRNKPTLVNNVETLANVPDIIKNGAQWFRQFGTESCPGTKVYTILGDVVNAGLI 365

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M     ++I ++ GGI+ G     A++ G +        +M    MD+D LKE  + 
Sbjct: 366 EVEMGTPLRDIIFQYGGGIKDGKKFKCALVGGAAG--AFLGNEMLDVKMDFDNLKEYKAV 423

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A++VM     I+  +  +  F+KHESCG+CTPCR GT  ++ ++E+       + +
Sbjct: 424 LGSGAILVMSDGVCIVDMLKSILRFFKHESCGRCTPCRVGTKRLVEIIEKFASLEGTEED 483

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQY 419
           +D +  +S  ++  + C LG +   P+   IK FR   I    D+Y
Sbjct: 484 LDEMLNISLVMKDTSFCPLGQSVYLPVSSAIKYFRDEFISHFKDKY 529


>gi|118474520|ref|YP_891366.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261885722|ref|ZP_06009761.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118413746|gb|ABK82166.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 406

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 180/397 (45%), Positives = 244/397 (61%), Gaps = 16/397 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
            G  +  + + G + N++ IL+  R+ I+  V  SGLRG+GG G S G KW  M    SD
Sbjct: 12  NGYKIDVAKANGAYLNLENILKMDRNSIVEAVDKSGLRGKGGGGGSCGTKWKNMLAWESD 71

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +  YLVVN DESEPGTCKD+ I+  +PH LIEG +I+S+A+GA  A++Y+RGE+ RE  +
Sbjct: 72  K-RYLVVNGDESEPGTCKDKYILNLDPHLLIEGIIISSYALGAKRAYVYIRGEYEREFIT 130

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L  A+ E  A+  LG       D++IIV+ GAGAYICGE+TALLES+EGK+G PRLKP  
Sbjct: 131 LTNAIKE--AANELG-------DLEIIVYKGAGAYICGEKTALLESIEGKRGHPRLKPHN 181

Query: 196 PANVG-LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            A    L+GC   VNNVE+IA +P I++ G   Y   G E + GT LF++SG VN PC  
Sbjct: 182 KAEPDFLFGCACVVNNVETIASIPFIVKNGWEAYRSVGTEKSPGTLLFAVSGCVNTPCVK 241

Query: 255 EESMSITFDELIEKHCGGIRGGWDN--LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
           E        + I    GG+   W N  L AVIPGGSS   L   ++  A +DY+ LKE  
Sbjct: 242 EMPFGTKMIDFINDFGGGV---WKNRELKAVIPGGSSAAVLTKDEVLKATLDYESLKEFK 298

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT  ++V D +  + + +  L  FY  ESCGQCTPCREG GW +RV++++V+G    
Sbjct: 299 SALGTGGMMVFDDTISMPEVLLNLLEFYTEESCGQCTPCREGCGWALRVVKKIVEGEGSL 358

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           R++D L ++S  ++G+TIC    A    I G I  F 
Sbjct: 359 RDLDTLKDISYMLDGKTICVFAPAVKDVIMGFITKFE 395


>gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 599

 Score =  307 bits (786), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 158/408 (38%), Positives = 251/408 (61%), Gaps = 10/408 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           ++ + ++R  +  + K+L+    D ++ EVK SGLRGRGGAGF TG+KW    K   ++ 
Sbjct: 130 NIEEYIARDGYFALAKVLKHMSPDQVVEEVKKSGLRGRGGAGFPTGLKWELTRKSKGEK- 188

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ NADE +PG   DR ++  +PHT++E   IA +AIGA+  +IYVR E+    E L 
Sbjct: 189 KYIICNADEGDPGAFMDRSVLEGDPHTILEAMAIAGYAIGANQGYIYVRAEYPLAIERLN 248

Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           AA+ +    G LG N   S  G+D++I +  GAGA++CGEETAL+ S+EGK+GQPR+KPP
Sbjct: 249 AAISQAKEYGFLGENIMDSNFGFDIEIRI--GAGAFVCGEETALIASIEGKRGQPRVKPP 306

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           +PA  G++GCPT +NNVE++A +P I+ +GA W+   G E + GTK+F+++G +     V
Sbjct: 307 YPAQSGVWGCPTVINNVETLACIPPIIIKGADWFRSIGTEKSPGTKVFALAGKITNTGLV 366

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M IT  EL+ +  GG   G   + AV  GG S  C+P+      + DY+ L+++G+ 
Sbjct: 367 EVPMGITLKELLYEIGGGSSTG-KKIKAVQTGGPSGGCIPSDYFDTPV-DYESLQKLGAI 424

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  +IVMD    ++        F   ESCG+CTPCREGT  M+++++++  G   +R+
Sbjct: 425 MGSGGMIVMDEDDCMVDVARFFLEFTVDESCGKCTPCREGTRQMLKILDKITSGEGTERD 484

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           ++ L  ++  I+  ++C LG  A  P+   ++ +R   E  + +  RC
Sbjct: 485 LEELERLANVIKDTSLCGLGQTAPNPVLSTLQYYRDEYEAHVKE-KRC 531


>gi|147678346|ref|YP_001212561.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146274443|dbj|BAF60192.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 551

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 166/416 (39%), Positives = 244/416 (58%), Gaps = 5/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD-WIINEVKASGLRGRGGAGFSTG 63
           Q  +  N   +   S+ + + R  +  + K+L +     +I EVK SGLRGRGGAGFSTG
Sbjct: 128 QKIVLRNTIYIDPLSIEEYIGRDGYAALAKVLTQMTPAQVIEEVKKSGLRGRGGAGFSTG 187

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKW F        P Y+V N DE +PG   DR ++  +PH++IEG  I  +AIGA   ++
Sbjct: 188 MKWGFT-AAAPGTPKYVVCNGDEGDPGAFMDRSVLEGDPHSVIEGMAICGYAIGAEQGYV 246

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    + L  A+++    GLLG N     ++ DI +  GAGA++CGEETALL S+
Sbjct: 247 YVRAEYPLAIQRLSYAIEKAREYGLLGKNIFGTSFNFDIEIRIGAGAFVCGEETALLASI 306

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G+PR +PPFPA  G++G PT +NNVE+ A +  I+ +GA WY+  G E ++GTK+F
Sbjct: 307 EGKRGEPRPRPPFPAQSGVWGKPTVINNVETWANIAPIILKGADWYASIGTEKSKGTKVF 366

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G +N    VE  M IT  E++ +  GGI        AV  GG S  C+PA  +   I
Sbjct: 367 ALAGRINNTGIVEVPMGITLREIVYEIGGGIP-RKKQFKAVQTGGPSGGCIPAEHLDTPI 425

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            DYD L  +G+ +G+  +IVMD  T ++        F   ESCG+C+PCR GT  M  ++
Sbjct: 426 -DYDSLGALGAIMGSGGMIVMDEDTCMVDIAKFFLDFVVDESCGKCSPCRIGTKRMYEIL 484

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +R+  G  ++ +I+LL E++  I+   +C LG  A  P+   I+ FR   EE I +
Sbjct: 485 DRITNGQGREGDIELLSELATTIKNTALCGLGQTAPNPVLSTIRYFRDEYEEHIKE 540


>gi|290475913|ref|YP_003468808.1| NADH dehydrogenase I subunit F [Xenorhabdus bovienii SS-2004]
 gi|289175241|emb|CBJ82044.1| NADH dehydrogenase I chain F [Xenorhabdus bovienii SS-2004]
          Length = 454

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 171/403 (42%), Positives = 237/403 (58%), Gaps = 9/403 (2%)

Query: 20  LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L +  S+  +   +K L KG   D +   VK +GL+GRGGAGFSTG+KWS MPK  S   
Sbjct: 32  LDEYRSKSGYKGAEKAL-KGMVPDEVTTLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNI 90

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE++     L+
Sbjct: 91  RYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAVHLR 150

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP
Sbjct: 151 RAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFP 210

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTV 254
           A  G++G PT VNNVE++  VP IL  G  WY G   G+  + GTKL   SG V  P   
Sbjct: 211 ATSGVWGKPTCVNNVETLCNVPAILEYGKEWYIGLSEGKSKDAGTKLMGFSGRVKNPGVW 270

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E     T  E++E + GG+R G     A  PGG+    L    +    MD++ + + GS 
Sbjct: 271 ELPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTVDHL-DLPMDFENIAKAGSR 328

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGTA  + +D   +I+     L  F+  ESCG CTPCR+G  W ++++  +  G  Q  +
Sbjct: 329 LGTALAMAVDHEINIVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIENGKGQPGD 388

Query: 375 IDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 389 IETLEQLCRFLGPGKTFCAHAPGAMEPLQSAIKYFRDEFEAGI 431


>gi|213581185|ref|ZP_03363011.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 420

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 161/375 (42%), Positives = 225/375 (60%), Gaps = 4/375 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E        E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A 
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAV 405

Query: 399 WPIQGLIKNFRPLIE 413
            P+Q  IK FR   E
Sbjct: 406 EPLQSAIKYFREEFE 420


>gi|217968066|ref|YP_002353572.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217337165|gb|ACK42958.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 545

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 163/395 (41%), Positives = 238/395 (60%), Gaps = 7/395 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ + ++ G ++ + K L E   + +I E+K SGLRGRGGAGF  G+KW F  K+ SD 
Sbjct: 128 ESIEEYIANGGFEGLSKALSEMTPEDVIKEIKESGLRGRGGAGFPAGLKWEFTYKIPSDE 187

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V NADE EPGT KDR I+  +P  ++E   IA +A+GA   +IY+RGE+    E +
Sbjct: 188 -KYVVCNADEGEPGTFKDRLILEGDPFRIVEAMTIAGYAVGAKKGYIYIRGEYKLSIERM 246

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           Q A++     GLLG N  LG  +  DI V  GAGAYICGEETAL+ESLEGK+G PR+KPP
Sbjct: 247 QKAINTAREYGLLGENI-LGTNFSFDIEVRKGAGAYICGEETALIESLEGKRGIPRIKPP 305

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           +P + GL   PT VNNVE++A VP I+R GA W+  FG E   GTK+++I G V     +
Sbjct: 306 YPVSQGLRNKPTVVNNVETLANVPDIIRNGAKWFRQFGTEKCPGTKVYTILGDVVNAGLI 365

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M     ++I ++ GGI+ G     A++ G +        +M    MD++ LKE  + 
Sbjct: 366 EVEMGTPLRDIIFQYGGGIKNGGKFKCALVGGAAG--AFLGEEMLDVKMDFENLKEYKAV 423

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A++VM     I+  +  +  F+KHESCG+CTPCR GT  ++ ++ER       + +
Sbjct: 424 LGSGAILVMSDGACIVDMLKSILRFFKHESCGRCTPCRVGTKRLVEIIERFASLEGTEED 483

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +D +  +S  ++  + C LG +   P+   +K FR
Sbjct: 484 LDEMVNISLVMKDTSFCPLGQSVYLPVSSAVKYFR 518


>gi|317048935|ref|YP_004116583.1| NADH-quinone oxidoreductase subunit F [Pantoea sp. At-9b]
 gi|316950552|gb|ADU70027.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. At-9b]
          Length = 448

 Score =  305 bits (782), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 159/379 (41%), Positives = 225/379 (59%), Gaps = 4/379 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D I+  VK SGL+GRGGAGF+TG+KWS MPK  S    YL+ NADE EPGT KDR +M 
Sbjct: 49  QDEIVATVKDSGLKGRGGAGFNTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 108

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +G +G N    G+D
Sbjct: 109 QMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAANLRKAIAEATEAGFIGKNILGTGFD 168

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE+++ VP
Sbjct: 169 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLSNVP 228

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I   G  WY    +  + GTK+   SG V  P   E     T  E++E + GG+R G  
Sbjct: 229 AIFLNGVEWYKNISKSEDTGTKMMGFSGRVKNPGVWELPFGTTAREILEDYAGGMRDGL- 287

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              A  PGG+    L   Q     M++  + + GS LGTA  + +D    ++  +  L  
Sbjct: 288 KFKAWQPGGAGTDFL-TDQHLDLPMEFASIGKAGSRLGTALAMAVDHEISMVSLVRNLEE 346

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAA 397
           F+  ESCG CTPCR+G  W ++++  L +   Q  +I+ L ++ + +  G+T CA    A
Sbjct: 347 FFARESCGWCTPCRDGLPWSVKILRALEQKQGQPGDIETLQQLCRQLGPGKTFCAHAPGA 406

Query: 398 AWPIQGLIKNFRPLIEERI 416
             P+Q  IK FR   E  I
Sbjct: 407 VEPLQSAIKYFREEFEAGI 425


>gi|257453971|ref|ZP_05619247.1| NADH oxidoreductase, f subunit [Enhydrobacter aerosaccus SK60]
 gi|257448636|gb|EEV23603.1| NADH oxidoreductase, f subunit [Enhydrobacter aerosaccus SK60]
          Length = 490

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 167/393 (42%), Positives = 231/393 (58%), Gaps = 7/393 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ +   L K    + N +K + +RGRGGAGF+ G+KW+FM       P YL+ NADE E
Sbjct: 62  FEGLKNALAKSAKEVGNMIKDANVRGRGGAGFNAGLKWTFM-TPPDGGPRYLICNADEME 120

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR +M   P  LIEG +I+ +AIGA   +I++RGE+I   + L  A+DEC A G 
Sbjct: 121 PGTFKDRLLMERLPFQLIEGMIISGYAIGATAGYIFIRGEYIEAAKRLNNALDECRAKGY 180

Query: 149 LGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LG N    GY  D+ VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT 
Sbjct: 181 LGDNILGSGYSFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVSGAWGRPTV 240

Query: 208 VNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           VNNVES+  +P I+  G  WY G   G+  N GTK+   SG VN P   E     T  E+
Sbjct: 241 VNNVESLNNMPGIMLHGVEWYKGLAQGKSENPGTKIMGCSGLVNEPGLWELPFGTTAREI 300

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEMGSGLGTAAVIVMD 324
           I  +  G++ G   L A +PGG+S   L A      + MD++ + + GS LGT  ++V+D
Sbjct: 301 IFDYAKGMKDG-RKLKAWLPGGASTDFLTASDEHLDLPMDFEPIMKAGSRLGTCLIMVVD 359

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S D++     L  F+  ESCG CTPCR+G  W ++ +  +  G  Q  +ID+L +++K+
Sbjct: 360 ESQDMVSLSLNLQKFFARESCGWCTPCRDGLPWGVKTLHAIDTGNGQPVDIDVLRQLTKD 419

Query: 385 I-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +  G+T CA    A  P+Q  +K F P  E +I
Sbjct: 420 LWLGKTFCAHAPGAVEPLQSALKYFLPEFEAKI 452


>gi|300723694|ref|YP_003713001.1| NADH dehydrogenase I subunit F [Xenorhabdus nematophila ATCC 19061]
 gi|297630218|emb|CBJ90869.1| NADH dehydrogenase I chain F [Xenorhabdus nematophila ATCC 19061]
          Length = 454

 Score =  305 bits (781), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 167/402 (41%), Positives = 236/402 (58%), Gaps = 7/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +   +K L+    D ++  VK +GL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 32  LDEYRSQNGYKGAEKALKGMAPDEVVALVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 91

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE++     L+ 
Sbjct: 92  YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAVHLRK 151

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  ++GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 152 AIEEAKSAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 211

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
             G +G PT VNNVE++  VP IL  G  WY G   G+  + GTKL   SG V  P   E
Sbjct: 212 TSGAWGKPTCVNNVETLCNVPAILEHGKEWYIGLSEGKSKDAGTKLMGFSGRVKNPGLWE 271

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E + GG+R G     A  PGG+    L    +    MD++ + + GS L
Sbjct: 272 LPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEDHLD-LPMDFESIAKAGSRL 329

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I
Sbjct: 330 GTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIESGKGQPGDI 389

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 390 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 431


>gi|197285616|ref|YP_002151488.1| NADH dehydrogenase I subunit F [Proteus mirabilis HI4320]
 gi|227356119|ref|ZP_03840509.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis ATCC 29906]
 gi|194683103|emb|CAR43660.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis HI4320]
 gi|227163764|gb|EEI48676.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis ATCC 29906]
          Length = 454

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/409 (41%), Positives = 236/409 (57%), Gaps = 7/409 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  ++  +   +K L+    D + +EVK +GL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 32  LDEYRAKNGYKAAEKALKSMAPDEVTSEVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 91

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ NADE EPGT KDR +M   PH LIEG +I + A+ A+  +I++RGE+I   + L+ 
Sbjct: 92  YILCNADEMEPGTYKDRLLMEELPHLLIEGMIIGAHALKAYRGYIFLRGEYIEAAKHLRH 151

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  A+G LG N    G D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 152 AIEEAKAAGFLGKNIFGSGIDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 211

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
             G +G PT VNNVE++  VP I+  G  WY G   G+  + GTKL   SG V YP   E
Sbjct: 212 TSGAWGKPTCVNNVETLCNVPAIIEHGKDWYIGLSAGKSPDAGTKLMGFSGRVKYPGLWE 271

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E + GG+R G   L A  PGG+    L    +    MD+  + + GS L
Sbjct: 272 LPFGTTAREILEDYAGGMRDGL-KLKAWQPGGAGTDFLTEDHL-DLPMDFGTIAKAGSRL 329

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D   +++     L  F+  ESCG CTPCR+G  W + ++  + KG  +  +I
Sbjct: 330 GTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVEILRAIEKGQGRPGDI 389

Query: 376 DLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           + L  + +++  G T CA    A  P+Q  IK FR   E  I Q    N
Sbjct: 390 ETLEHLCRSLSPGHTFCAHAPGAVEPLQSAIKYFREEFEAGIIQEDYTN 438


>gi|94676644|ref|YP_588821.1| NADH-quinone oxidoreductase, F subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219794|gb|ABF13953.1| NADH-quinone oxidoreductase, F subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 444

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 173/411 (42%), Positives = 242/411 (58%), Gaps = 8/411 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L +  S+  +    K L++  D II+ +K SGL+GRGGAGF TG+KWS +    S+   Y
Sbjct: 25  LDEYKSKNGYVGAHKALKQTPDEIISLIKNSGLKGRGGAGFYTGIKWSLISVNASENIRY 84

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+ NADE EPGT KDR +M   PH LIEG +IA+FAI A+ ++I++RGE++    +LQ A
Sbjct: 85  LLCNADEMEPGTYKDRLLMEQLPHLLIEGILIAAFAIRANRSYIFLRGEYVNAAANLQRA 144

Query: 140 VDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           + E   +GLLG N  LG  +D+++ +H GAG YICGEETALL SLEG++  PR KPPFPA
Sbjct: 145 IIEANKAGLLGKNI-LGSEFDLELFLHTGAGRYICGEETALLNSLEGRRAIPRSKPPFPA 203

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
            +G++G PT VNNVE++  VP IL  G  WY     G  N+ GTKL   SG V  P   E
Sbjct: 204 TIGVWGKPTCVNNVETLCNVPAILEYGLKWYKSINKGMSNDTGTKLMGFSGRVKKPGLWE 263

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               IT  E++E + GGI  G   L A  PGG+S   L    +    MD++ L + GS L
Sbjct: 264 LPFGITAREILEDYAGGIADGM-TLKAWQPGGASTGFLTPDYL-DIPMDFEHLIQAGSRL 321

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  I +D   +++     +  F+  ESCG CTPCR+G  W ++++  L     Q  +I
Sbjct: 322 GTALAIAVDDKINMVSLTRNIEEFFARESCGWCTPCRDGLPWSVKLLRALEDKQGQPEDI 381

Query: 376 DLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ++L ++   +  G+T CA    A  P++  +K FR   E  I   +  N +
Sbjct: 382 NILEQLCTLLAPGKTFCAHAPGAIEPLKSALKYFRGEFEAGISDENLSNVR 432


>gi|254166582|ref|ZP_04873436.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|289596482|ref|YP_003483178.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469]
 gi|197624192|gb|EDY36753.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|289534269|gb|ADD08616.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469]
          Length = 404

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/395 (41%), Positives = 246/395 (62%), Gaps = 11/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           ++ D +++G +  + K LE G+D II+EV+ SGL GRGGA F TG+K  F+ K     P 
Sbjct: 9   NVEDYLAQGGFKALRKALEYGQDEIISEVETSGLLGRGGAAFPTGLKMKFVRKE-RKTPK 67

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE EPGT KDR +M   P+ ++EG +I+++AIGA   F Y+R E+    + ++ 
Sbjct: 68  YIVANADEGEPGTFKDRVLMERNPYQILEGMIISAYAIGAKKGFFYIRYEYKEIAKDIER 127

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            ++E    G+LG N   SK  +D++++V  GAGAY+CGEETAL+ES+EGK+G PR+KPP+
Sbjct: 128 KIEELRRLGILGPNIYGSKFSFDIELVV--GAGAYVCGEETALMESIEGKRGYPRIKPPY 185

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE++A VP ++  G + YS  G+E   G KLFS+SG V  P   E
Sbjct: 186 PAQYGLWGKPTLINNVETLANVPLVMSMGGANYSKLGKEGCTGPKLFSVSGFVKNPGVYE 245

Query: 256 ESM-SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
            ++   T  E+IE   GG+ G +     V+ GG +   +   +     + +   KE G  
Sbjct: 246 ANLGEKTIGEMIE-LAGGVVGKFK---GVMLGGGAAGFILTEEYLDMPLCFKDAKERGLF 301

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT  +IV + S +I   +  ++ F++HESCGQC PCR GT  M  ++E++V+G  +K +
Sbjct: 302 LGTGDIIVFNESVNIWDILLNIAKFFEHESCGQCFPCRYGTKRMREIIEKIVRGDGRKED 361

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           I+ L   +K ++  ++C LG +A    +  +KNFR
Sbjct: 362 IEKLNATAKAMKIASLCPLGTSAMLAYESAMKNFR 396


>gi|15606024|ref|NP_213401.1| NADH dehydrogenase I chain F [Aquifex aeolicus VF5]
 gi|7387960|sp|O66841|NUOF_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|2983201|gb|AAC06800.1| NADH dehydrogenase I chain F [Aquifex aeolicus VF5]
          Length = 426

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 174/391 (44%), Positives = 239/391 (61%), Gaps = 11/391 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ + +  G +  ++K L    + II+ V  S LRGRGGAGF TG KW F   V +  P 
Sbjct: 30  SIDEYLKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFA--VQNPGPR 87

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y + NADESEPGT KDR I+  +PH LIEG +I+S+AIGA+ A+IY+RGE+      L+ 
Sbjct: 88  YFICNADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRD 147

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E    G LG N    G+D++I V  GAGAYICGEETAL+ESLEGK+G PRLKPP+P 
Sbjct: 148 AIEEAKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYPV 207

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNVE+IA VP I+  G   Y   G  +  G KLF +SG V  P   E  
Sbjct: 208 QKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYELP 267

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M+ T  E+I K+ GG  G    + AV  G  ++ C  + ++    MDY  L   G G GT
Sbjct: 268 MNTTLREVIFKYAGGTLGN-KKVKAVFSG--ALDCFSSEEL-DIPMDYSPL---GFG-GT 319

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             VIV+    DI++A  +++ FY+HE+CGQCTPCR G      ++E++ KG A +++ + 
Sbjct: 320 GTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWEG 379

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
              V++NI+  +IC LG  A   I+  ++ F
Sbjct: 380 FDFVNRNIQPTSICGLGAVAGRLIRQTLEKF 410


>gi|146331922|gb|ABQ22467.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 1
           precursor-like protein [Callithrix jacchus]
          Length = 218

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 140/207 (67%), Positives = 166/207 (80%)

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           ++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH GG
Sbjct: 1   TVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGG 60

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           + GGWDNLLAVIPGGSS P +P       +MD+D L +  +GLGTAAVIVMDRSTDI+KA
Sbjct: 61  VTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKA 120

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
           I RL  FYKHESCGQCTPCREG  WM +VM R V+G AQ  EID L+E+SK IEG TICA
Sbjct: 121 IARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEISKQIEGHTICA 180

Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQY 419
           LGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 181 LGDGAAWPVQGLIRHFRPELEERMQRF 207


>gi|289548717|ref|YP_003473705.1| NADH dehydrogenase (quinone) [Thermocrinis albus DSM 14484]
 gi|289182334|gb|ADC89578.1| NADH dehydrogenase (quinone) [Thermocrinis albus DSM 14484]
          Length = 425

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/391 (43%), Positives = 239/391 (61%), Gaps = 11/391 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ + +  G +  ++K L    + I++ V  S LRGRGGAGF TG KW     V +  P 
Sbjct: 30  SIEEYLKDGGYQALEKALSMKPEEIVDWVDKSQLRGRGGAGFPTGRKWKLA--VQNPAPR 87

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADESEPGT KDR ++  +PH LIEG VI+++AIGA+ AFIY+RGE+      L+ 
Sbjct: 88  YLICNADESEPGTFKDRILIERDPHLLIEGIVISAYAIGANEAFIYIRGEYPAGYRILRD 147

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E    G +G N    G+D++I V  GAGAYICGEE+AL+ESLEGK+G PR+KPP+P 
Sbjct: 148 AIEEARKKGFVGKNILGSGFDLEIYVARGAGAYICGEESALIESLEGKRGWPRIKPPYPV 207

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNVE++  +P I+  G   Y   G  +  G KLF +SG V  P   E  
Sbjct: 208 QYGLFGRPTVVNNVETLCNIPIIVGMGWEEYRYIGPSDYPGPKLFPVSGKVKKPGVYELP 267

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M+ T  E+I K+ GG  G    + AV+ G  ++ C  A ++    MDY      G G GT
Sbjct: 268 MNTTLREVIFKYAGGTIGN-KKVKAVLSG--ALDCFSADEL-DTPMDYS---PFGFG-GT 319

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             VIV+    DI++A  +++ FY HESCGQCTPCR GT     ++ER+VKG+A +++ D 
Sbjct: 320 GTVIVLTEEDDIVEACLKVAEFYAHESCGQCTPCRVGTHEQEYLLERIVKGVADEKDWDA 379

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
              V++ I+  +IC LG  A   I+  ++ F
Sbjct: 380 FVFVNRYIQPTSICGLGAVAGRLIKQAMEKF 410


>gi|90579193|ref|ZP_01235003.1| NADH dehydrogenase I, F subunit [Vibrio angustum S14]
 gi|90440026|gb|EAS65207.1| NADH dehydrogenase I, F subunit [Vibrio angustum S14]
          Length = 427

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 170/414 (41%), Positives = 256/414 (61%), Gaps = 5/414 (1%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           N +  +  + ++    G + +++ I+ + R+ ++ E+KASGLRG GG GF TG+KW F+ 
Sbjct: 8   NFHHPKPLNFAEYCENGGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFLA 67

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K  S  P YLVVN DESEPG+ KDR ++  +PHT++EG + +S+ +GA  AF+++RGE+ 
Sbjct: 68  KDAS-HPVYLVVNLDESEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEYR 126

Query: 131 RERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
              + L+ AV E  A+GL+G N    G+D+D+ VH  AG YICGEETALL +LEG +G P
Sbjct: 127 EGAKGLEKAVQEARAAGLVGENVMGSGWDLDVDVHLSAGRYICGEETALLNALEGYRGNP 186

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R KPPFP   GL+G PT VNNVESI  +P I+ +GA W+   G+ +  G+ ++ +SG V 
Sbjct: 187 RSKPPFPIVKGLWGQPTIVNNVESICHIPWIVHKGAEWFKSQGKGDAAGSHIYQVSGPVK 246

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P   E  +  T  ELI +H GG+    + L+  +PGG+S   +    +    +D+DG  
Sbjct: 247 KPGFFELPLGTTARELIFEHAGGLLDDRE-LVGFLPGGASTQFMLPEHLD-VPLDWDGPA 304

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            +GS LGT  +IVMD +   I  +  L+ F+  ESCG CTPCR+G  +++ V+++   G 
Sbjct: 305 TVGSRLGTGGIIVMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVLKKFETGE 364

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           A  +++DLL+E+ + I   T CAL   A  PI   +K+F+ + E  I+   RC 
Sbjct: 365 ATSKDLDLLHELCETIYPNTFCALAPGALMPIMTGLKHFKHVFESHIEG-QRCT 417


>gi|256422831|ref|YP_003123484.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM
           2588]
 gi|256037739|gb|ACU61283.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM
           2588]
          Length = 426

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/382 (41%), Positives = 233/382 (60%), Gaps = 6/382 (1%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMP-KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTL 105
           V+ S L+GRGGAGFSTGMKWS +P    +  P YL+ NADE EPGT KDR ++   PH L
Sbjct: 48  VQDSNLKGRGGAGFSTGMKWSLIPMDDKATHPKYLIANADEMEPGTFKDRLLLEGNPHQL 107

Query: 106 IEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVH 164
           IEG ++A++AI A  A++++R  +      ++ ++ E Y +G LG++    G+ +++ +H
Sbjct: 108 IEGMILAAYAIQADIAYVFLRWAYHEAATLIRKSIQEAYDAGYLGTDILGSGFHLEMYLH 167

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
            G G Y+CGEETALL +LEGK+  PR KPPFP   GL+G PT VNNVE++  VP I+  G
Sbjct: 168 TGVGRYMCGEETALLNALEGKRATPRAKPPFPQISGLFGKPTIVNNVETLCCVPHIVNNG 227

Query: 225 ASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI 284
            +W+ G    ++ GTK++ +SG V  P   E  M +T  ELIE+H GG++ G++ L  V+
Sbjct: 228 VAWFKGLSYSDDGGTKVYGVSGKVKRPGAWELPMGVTMRELIEEHAGGMKAGYE-LKGVL 286

Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES 344
           PGG+S   L   Q     MDY  +   GS LGT  +IV+D  T  +  +  L  F+  ES
Sbjct: 287 PGGASTDFL-TTQHLDIKMDYKSVAAAGSRLGTGTMIVLDSGTCPVGFVHNLQHFFAQES 345

Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQG 403
           CG CTPCREG  W+ +++  L KG  +  +I+LL   ++ +  G T CAL   A  P+Q 
Sbjct: 346 CGWCTPCREGLPWVEKILLALEKGDGKPEDIELLQMHTQFLGPGNTFCALAPGAMEPLQS 405

Query: 404 LIKNFRPLIEERIDQYHRCNFQ 425
            +K F    E+ + ++ +C + 
Sbjct: 406 ALKYFMDDFEKHV-EHKKCPYN 426


>gi|218961474|ref|YP_001741249.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
           bidirectional hydrogenase), subunit beta (hymB-like)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730131|emb|CAO81043.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
           bidirectional hydrogenase), subunit beta (hymB-like)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 520

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/394 (39%), Positives = 246/394 (62%), Gaps = 7/394 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +++ D +  G +  ++K L   + + II EVK SGL+GRGGA F  G+KWSF   +  D 
Sbjct: 121 ENIDDYIGAGGYVALEKALTNMQPNDIIAEVKKSGLKGRGGAAFPAGLKWSFTSAL--DV 178

Query: 77  PH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           P  Y+VVNADE EPGT KDR IM  +PH L+EG ++ + A+GA  A+IY+RGE+      
Sbjct: 179 PQKYVVVNADEGEPGTFKDRLIMEGDPHQLLEGIILCARAVGASKAYIYIRGEYKLCIAR 238

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ A+ + Y  G+LG N    G+D+DI +  GAGAY+CGEETAL+ESLEG +G PR KPP
Sbjct: 239 LEKAIKQAYDYGILGKNIFDSGFDLDIELKIGAGAYVCGEETALIESLEGNRGTPRWKPP 298

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FP   GL+  PT VNNVE++A VP I+ +GA  +  +G  +  GTK+++I G V YP   
Sbjct: 299 FPGVEGLWKAPTIVNNVETLANVPFIIAKGADEFLQYGTPDCPGTKVYTILGDVAYPGLC 358

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   +I  + GG++ G+    A + GG++   LP  ++    MD+  L +  + 
Sbjct: 359 EVDMGTTLRTIINDYAGGMKKGF-RFKAALVGGAAGVILP-DRLLDVKMDFTSLNQYSAV 416

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ A++V++    I+  +W +  F++HESCG+C+PC+ GT  + +++ ++ KG     +
Sbjct: 417 LGSGAILVLNEHQSIVDLLWSILRFFRHESCGKCSPCKNGTQQLYQLISKIRKGNGTMED 476

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++L+  +++ ++  + CALG +    ++  I+NF
Sbjct: 477 VNLMLLIAETMQQTSFCALGQSPIMAVRSAIENF 510


>gi|114566322|ref|YP_753476.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337257|gb|ABI68105.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 408

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 169/390 (43%), Positives = 229/390 (58%), Gaps = 16/390 (4%)

Query: 34  KILEKGRDW----IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           K LEK R      +I EVK SGLRGRGGAGF+ GMKWSF+P        Y+V N DE EP
Sbjct: 30  KGLEKARGMTSKDLIEEVKKSGLRGRGGAGFNAGMKWSFVPPA---EVKYVVCNLDEGEP 86

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR I       LIEG  I   AI A   +IY RGE+    + L+ A+      G L
Sbjct: 87  GTYKDRIICEKNAQALIEGMAICGVAINAKQGYIYCRGEYPFVVDLLRKAIQSAKDVGAL 146

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
           G       + DI V  GAGAY+CGEETAL+ES+EG +G+PR KPPFP   GL+G PT VN
Sbjct: 147 G-------EFDIEVRMGAGAYVCGEETALIESIEGHRGEPRFKPPFPGVAGLWGVPTVVN 199

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE+ A +P IL  GA W++  G     GTK+ +++G VN P   E   +    ++I K 
Sbjct: 200 NVETFACLPYILTNGADWFASIGAPKYPGTKVLTLTGDVNNPTYFEVPTNYILSDVIYKL 259

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
            GGI+ G     AV  GG+S   +P   +  +I D+D +  +G+ LG+ AV+VMD + DI
Sbjct: 260 GGGIKNG-RKFKAVQVGGTSGAFIPEQNLNTSI-DFDSMSAIGAALGSGAVLVMDETRDI 317

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           +  + R+S F++HESCG+C PCREGT     +ME++  G A + +ID L  +++ ++   
Sbjct: 318 VDIVTRISKFFEHESCGKCNPCREGTFRCREIMEKINSGRATEADIDNLLLLARVMKRAA 377

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +C LG AA  PI   I++F      ++ QY
Sbjct: 378 LCGLGQAAPVPITSTIEHFGHEYRRKLLQY 407


>gi|238897509|ref|YP_002923188.1| NADH dehydrogenase I chain F [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465266|gb|ACQ67040.1| NADH dehydrogenase I chain F [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 472

 Score =  303 bits (776), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 159/376 (42%), Positives = 231/376 (61%), Gaps = 11/376 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++ VK +GL+GRGGAGFSTG+KWS MPK  + R  YL+ NADE EPGT KDR +M   P
Sbjct: 61  IVHSVKEAGLKGRGGAGFSTGLKWSLMPKDPNMRIRYLLCNADEMEPGTYKDRLLMEQLP 120

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E    GLLG N    G+D ++
Sbjct: 121 HLLVEGMLISAFALQAYRGYIFLRGEYIEAAVHLRRAIVEATQVGLLGKNIMGSGFDFEL 180

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           +VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  VP I+
Sbjct: 181 MVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAIM 240

Query: 222 RRGASWYSG-------FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
             G +WY G       F +  + GTKL   SG V  P   E    I+  E++E + GG++
Sbjct: 241 EHGVAWYQGIAPDASRFAKSKDTGTKLMGFSGRVKNPGVWELPFGISAREILEDYAGGMK 300

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
            G     A  PGG+    L    +    MD++ + + GS LGTA  + +D   +++    
Sbjct: 301 NGL-KFKAWQPGGAGTDFLTEEHL-DLPMDFEHIGKAGSRLGTALAMAVDHEINMVSLTC 358

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICAL 393
            L  F+  ESCG CTPCR+G  W +++++ L +G  ++ +I+ L ++ + +  G+T CA 
Sbjct: 359 NLEEFFARESCGWCTPCRDGLPWSVKILKALERGEGREGDIETLEQLCRFLGPGKTFCAH 418

Query: 394 GDAAAWPIQGLIKNFR 409
              A  P+Q  +K FR
Sbjct: 419 APGAVEPLQSALKYFR 434


>gi|78221382|ref|YP_383129.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78192637|gb|ABB30404.1| NADH dehydrogenase subunit F [Geobacter metallireducens GS-15]
          Length = 422

 Score =  303 bits (775), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 167/377 (44%), Positives = 228/377 (60%), Gaps = 7/377 (1%)

Query: 50  SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           SGLRGRGGAGF TG KWSF+P+     P YL+ N DE EPGT KDR ++   P++L+EG 
Sbjct: 48  SGLRGRGGAGFPTGKKWSFVPRDIPG-PRYLICNCDEMEPGTYKDRVLLEANPYSLVEGM 106

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAG 168
            +A++AIG   AFI++R  +    E+ + A+ E  A+GLLG N    G+ +++ VH  AG
Sbjct: 107 TLAAYAIGVAHAFIFIRRGYEEAAENCRRAIAEAKAAGLLGENILGTGFSLELDVHQSAG 166

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
            YICGEETAL+ +LEGK+  PR KPPFPA  GL+G PT VNNVE++A +P I+  GA+W+
Sbjct: 167 RYICGEETALMNALEGKRANPRSKPPFPAVKGLWGRPTVVNNVETLANIPAIVANGAAWF 226

Query: 229 SGFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
            G  R     G KLF +SGHVN     E  + +T  E+I+  CGG+  G +   A IPGG
Sbjct: 227 KGLARIPEAAGMKLFCVSGHVNNTACFELPLGMTLGEIIDGPCGGMLPGRE-FKACIPGG 285

Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347
           +S P           MD+D + + GS LGT  ++V DR T ++ A   L VFY  ESCG 
Sbjct: 286 ASTPFFTKEHWH-VPMDFDTVAKAGSRLGTGGIVVFDRDTCMVAATLNLIVFYARESCGW 344

Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           CTPCREG  ++  V+ R+  G  ++  I +L E  + +   + C L   A  P++GL++ 
Sbjct: 345 CTPCREGLPFVQDVLARIEAGEGREEHIGILREHIQYLN-YSFCPLAPGAMGPVEGLLRL 403

Query: 408 FRPLIEERIDQYHRCNF 424
           F   I E I    RC F
Sbjct: 404 FEGEIREHI-VLGRCPF 419


>gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
 gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
          Length = 659

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 166/419 (39%), Positives = 247/419 (58%), Gaps = 11/419 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N   +  + L + ++R  +    K L   R  +I EVK SGLRGRGGAGF TG KW 
Sbjct: 182 VLANCGHINPEDLGEYLARQGYRGFLKALAMERAAVIAEVKRSGLRGRGGAGFLTGQKWE 241

Query: 68  FMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           F     +D P    Y+V NADE +PG   DR ++  +PH ++EG ++A +AIGA   +IY
Sbjct: 242 FT----ADAPGEEKYIVCNADEGDPGAFMDRSVLEGDPHAVLEGMLVAGYAIGAREGYIY 297

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           VR E+      L+ A+ +  A GLLG N    G+   + V  GAGA++CGEETALL S+E
Sbjct: 298 VRAEYPLAIRRLRTAIAQAEACGLLGENILASGFSFRVYVKAGAGAFVCGEETALLTSIE 357

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G +G PR++PP+PA  GL+  PT +NNVE++A +P ILRRGA WY+  G   ++G+K+F+
Sbjct: 358 GNRGMPRVRPPYPAVKGLWSKPTNINNVETLANIPHILRRGADWYAAMGVGRSKGSKVFA 417

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           ++G VN    VE  M ++  E+I    GGI+GG     AV  GG S  CLP   +   + 
Sbjct: 418 LTGKVNNTGLVEVPMGLSLREIIFAIGGGIQGG-KAFKAVQIGGPSGGCLPESLLDTPV- 475

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DY+ L E G+ +G+  ++VMD ST ++        F + ESCG+C PCREGT  M+ ++ 
Sbjct: 476 DYESLLEAGAMVGSGGLVVMDESTCMVDIARYFLNFTQQESCGKCAPCREGTKRMLEIVT 535

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           R+ +G  +  +++ L +++  I+  ++C LG +A  P+   ++ FR   E  I    RC
Sbjct: 536 RITEGEGRLEDLEALEKLAAVIKDTSLCGLGQSAPNPVLTTLRYFRDEYEAHIHD-QRC 593


>gi|89073313|ref|ZP_01159843.1| NADH dehydrogenase I, F subunit [Photobacterium sp. SKA34]
 gi|89051023|gb|EAR56487.1| NADH dehydrogenase I, F subunit [Photobacterium sp. SKA34]
          Length = 427

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 169/414 (40%), Positives = 256/414 (61%), Gaps = 5/414 (1%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           N +  +  + ++    G + +++ I+ + R+ ++ E+KASGLRG GG GF TG+KW F+ 
Sbjct: 8   NFHHSKPLNFAEYCENGGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFLA 67

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K  S  P YLVVN DESEPG+ KDR ++  +PHT++EG + +S+ +GA  AF+++RGE+ 
Sbjct: 68  KDAS-HPVYLVVNLDESEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEYR 126

Query: 131 RERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
              + L+ AV E  A+GL+G N    G+D+D+ VH  AG YICGEETALL +LEG +G P
Sbjct: 127 EGAKGLEKAVQEARAAGLVGENVMGSGWDLDVDVHLSAGRYICGEETALLNALEGYRGNP 186

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R KPPFP   GL+G PT VNNVESI  +P I+ +GA W+   G+ +  G+ ++ +SG V 
Sbjct: 187 RSKPPFPIVKGLWGQPTIVNNVESICHIPWIVHKGAEWFKSQGKGDAAGSHIYQVSGPVK 246

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P   E  +  T  ELI +H GG+    + L+  +PGG+S   +    +    +D+DG  
Sbjct: 247 KPGFFELPLGTTARELIFEHAGGLLDDRE-LVGFLPGGASTQFMLPEHLD-IPLDWDGPA 304

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            +GS LGT  +IVMD +   I  +  L+ F+  ESCG CTPCR+G  +++ V+++   G 
Sbjct: 305 TVGSRLGTGGIIVMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVLKKFETGE 364

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           A  +++DLL+E+ + I   T CAL   A  PI   +K+F+ + +  I+   RC 
Sbjct: 365 ATSKDLDLLHELCETIYPNTFCALAPGALMPIMTGLKHFKHVFDSHIEG-QRCT 417


>gi|322417695|ref|YP_004196918.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320124082|gb|ADW11642.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 420

 Score =  302 bits (774), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 165/370 (44%), Positives = 226/370 (61%), Gaps = 8/370 (2%)

Query: 50  SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           SGLRGRGGAGF TG KWSF+P+     P +L+ N DE EPGT KDR ++ H P++LIEG 
Sbjct: 48  SGLRGRGGAGFPTGKKWSFVPRDLPG-PRWLICNCDEMEPGTYKDRVLLEHNPYSLIEGM 106

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167
            +AS+A+G   AFI++R  + +  E+L   + E   SGLLG    LG  + +D+ +H  A
Sbjct: 107 TLASYALGVRHAFIFIRKGYEKAAENLARGIAEAKKSGLLGERI-LGTEHSIDLDLHLSA 165

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           G YICGEETAL+ +LEGK+  PR KPPFPA  GL+  PT VNNVE++A +P+I+  GA+W
Sbjct: 166 GRYICGEETALINALEGKRPNPRQKPPFPAVKGLWQGPTVVNNVETLANIPSIIANGAAW 225

Query: 228 YSGFG-RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
           + G        GTKLF +SG V     VE  +  T  E+IE  CGG+R G     A IPG
Sbjct: 226 FKGLALTPEGAGTKLFCVSGSVQNRVCVELPIGTTLGEIIEGSCGGMRDG-KKFKACIPG 284

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G+S   L   QM+   MDYD + + GS LG+  +IV D    +++A   L  F+  ESCG
Sbjct: 285 GASTQFLTPDQMK-VPMDYDSVAKAGSRLGSGGIIVFDEGHCLVEATLNLITFFARESCG 343

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
            CTPCREG  ++  ++ R+  G  ++ +I +L E  K +   T CAL   A  P+ GL++
Sbjct: 344 WCTPCREGLPYVQEILTRIENGRGEEEDIGILREHVKYLN-YTFCALAPGAMAPLDGLLR 402

Query: 407 NFRPLIEERI 416
           +F   + E I
Sbjct: 403 DFEDEVREHI 412


>gi|195091512|ref|XP_001997541.1| GH25296 [Drosophila grimshawi]
 gi|193906148|gb|EDW05015.1| GH25296 [Drosophila grimshawi]
          Length = 833

 Score =  302 bits (773), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 166/335 (49%), Positives = 214/335 (63%), Gaps = 3/335 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NLYG     L  +  RG W     +L+ G +WI++EVK SGLRGRGG+G+ 
Sbjct: 126 LKDCDRIFQNLYGFHDWRLKGACQRGDWYRTADLLDMGANWIVDEVKRSGLRGRGGSGYY 185

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG KW F+ KV ++    L++N  E EPGTCKDR+I+RHEPH +IEGC++A +A+G    
Sbjct: 186 TGNKWEFLQKVNANN-KILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGYAMGCEKC 244

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IYVR  F  E  +LQ A+ E Y  GLLG N+   G   DI V  G   Y+ GEETAL+ 
Sbjct: 245 IIYVRNCFYNEACNLQFALAEAYRYGLLGCNACDTGIKFDIQVQRG-DRYLSGEETALVN 303

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK  +PR +PP+    G +  P  V N E++AVVPTILRRGA W++G GR  N GTK
Sbjct: 304 CLMGKLARPRKRPPYLHEQGYFDHPCLVLNTETLAVVPTILRRGAKWFTGLGRNMNFGTK 363

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSI GHV +PCTVEE MS+   E+I+ H GG+ GGW+NLL V PGG S P +      G
Sbjct: 364 LFSICGHVQHPCTVEEEMSMPLREIIDMHAGGVCGGWNNLLGVFPGGLSSPLIGKVGAEG 423

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +MDYD L++ GS  GT  +IV+  + D +  + R
Sbjct: 424 LLMDYDCLQKAGSSFGTGGIIVVSNNCDPLLVMQR 458


>gi|225175951|ref|ZP_03729943.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168539|gb|EEG77341.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 608

 Score =  302 bits (773), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 158/414 (38%), Positives = 249/414 (60%), Gaps = 5/414 (1%)

Query: 5   QDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q+R +  N   +  +++   +  G +  + K +    + +I EVK+SGLRGRGGAGF T 
Sbjct: 109 QERFLLHNCGNIDPENIESYLDAGGYKGLAKAVAMKPEEVIAEVKSSGLRGRGGAGFPTH 168

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KW+F      ++  Y++ NADE +PG   DR I+  +PH+++EG +IA +AIGA   +I
Sbjct: 169 QKWTFARDAKGEQ-KYIICNADEGDPGAFMDRSILESDPHSVLEGMMIAGYAIGASVGYI 227

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+      L+ A+ +      LG+N    G+D DI +  GAGA++CGEETAL+ S+
Sbjct: 228 YIRAEYPLAIRRLKIAIAQAKEHYYLGTNILNSGFDFDIKIREGAGAFVCGEETALIASI 287

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G PR +PPFPA  GL+  PT++NNVE+ A VP IL +GA+ Y+  G E ++GTK+F
Sbjct: 288 EGKRGMPRFRPPFPAVSGLFASPTSINNVETFANVPQILAQGAAAYNVHGTEFSKGTKVF 347

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G VN    +E  M ++ ++++    GGI  G     AV  GG S  C+PA ++    
Sbjct: 348 ALAGKVNRGGLIEVPMGMSINDIVFAVGGGISTG-KAFKAVQTGGPSGGCIPA-ELADTA 405

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DY+ LKE+G+ +G+  +++MD  T ++        F + ESCG+CT CR GT  M+R++
Sbjct: 406 VDYESLKEIGAIMGSGGLLIMDEETCMVDVAKFFLTFTREESCGKCTFCRVGTEQMLRIL 465

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ER+ +G   + +ID L ++   I+  ++C LG     P+   IK FR   E  +
Sbjct: 466 ERITEGEGTEEDIDTLEDLGSKIKAGSLCGLGQTVPNPVLTTIKYFRDEYEAHV 519


>gi|302337010|ref|YP_003802216.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634195|gb|ADK79622.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Spirochaeta smaragdinae DSM 11293]
          Length = 1040

 Score =  301 bits (772), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 164/405 (40%), Positives = 246/405 (60%), Gaps = 7/405 (1%)

Query: 19  SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D+++ G +  + K+L E+  D +I+ +K SGLRGRGGAGF T +KW F  K   +  
Sbjct: 153 SIEDAIACGAYTALAKVLNEEDADKVIDTLKISGLRGRGGAGFPTWLKWDFTRKSPGEE- 211

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ NADE +PG   DR ++  +PH LIEG  IA   IGA    +YVR E+    + L 
Sbjct: 212 KYVLCNADEGDPGAFMDRSVLEGDPHALIEGMAIAGKTIGADHGVVYVRAEYPLAVKRLG 271

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++    SGLLG N  LG  ++ DI +  G+GA++CGEETAL+ S+EGK+G+PR +PPF
Sbjct: 272 HAIEAAKESGLLGENI-LGSEFNFDIEIRMGSGAFVCGEETALIASIEGKRGEPRPRPPF 330

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PAN GL+G P+ +NNVE+ A +  I+++GA WY+ FG   ++GTK+F+++G ++    VE
Sbjct: 331 PANKGLWGKPSLLNNVETYANIAGIIKKGAEWYASFGTTESKGTKVFALAGAISTSGLVE 390

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +     E++    GGI GG +   A I GG S  C+P  +     +DY  L+E+G+ +
Sbjct: 391 VPIGTCLGEVVFDIGGGIPGGKEFKAAQI-GGPSGGCIPR-EYLNVPLDYASLQELGAIM 448

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD  T ++        F + ESCG+CTPCR GT  M+ ++ER+  G  +  +I
Sbjct: 449 GSGGLIVMDDDTCMVDVARYFLEFVQEESCGKCTPCRVGTKRMLEILERICNGKGEMEDI 508

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           D L E+   I+   +C LG  A  P+   I++FR   EE I  +H
Sbjct: 509 DRLIELGTKIKETALCGLGQTAPNPVLSTIRHFRHEYEEHIRDHH 553


>gi|219667454|ref|YP_002457889.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
 gi|219537714|gb|ACL19453.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
          Length = 597

 Score =  301 bits (772), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 163/418 (38%), Positives = 249/418 (59%), Gaps = 5/418 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q RI   N   +    L D ++   ++ + K L    + I+ EVK SGLRGRGGAG
Sbjct: 112 FFAKQTRIALKNCGFIDPTKLDDYLAHKGYEGLKKALTMDPEAIVEEVKESGLRGRGGAG 171

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           FSTG+KWS      SD+  Y++ NADE +PG   DR ++  +PH +IEG +I ++AIGA 
Sbjct: 172 FSTGLKWSLCRATPSDK-KYVICNADEGDPGAFMDRGLLEGDPHAIIEGMLIGAYAIGAD 230

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y R E+    ++LQ A+ +   +G LG+N    G++  + ++ GAGA++CGEETAL
Sbjct: 231 EGYVYCRAEYPLAIKNLQIAIKQAEEAGFLGNNILGSGFNFHLKINAGAGAFVCGEETAL 290

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR++PPFPA  GL+G PT +NNVE+ + +P ILR GA WY+ +G E ++G
Sbjct: 291 MASIEGKRGMPRVRPPFPAQSGLWGKPTNINNVETWSNIPHILRNGAQWYAQYGTEKSKG 350

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G VN    VE  M +   ++I    GG         AV  GG S  CLP   M
Sbjct: 351 TKIFALTGKVNNTGLVEVPMGMPLRDIIFDI-GGGIKDGGKFKAVQIGGPSGGCLPE-DM 408

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L + G+ +G+  +++MD +T ++        F + ESCG+CTPCREG   M
Sbjct: 409 LDLPVDYDTLTKAGAMVGSGGLVIMDETTCMVDIARFFLNFSQSESCGKCTPCREGNKRM 468

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +++R+ +G  ++ +I+ L  ++  ++  ++C LG  A  PI   +K FR   EE I
Sbjct: 469 WEILDRITRGEGREDDIEKLETLAYTVKETSLCGLGQNAPNPILATLKYFREEFEEHI 526


>gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
 gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
          Length = 610

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/411 (39%), Positives = 247/411 (60%), Gaps = 5/411 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q +I T NL  +    + + ++R  +  + K L+   + +I E+K SGLRGRGGAG
Sbjct: 114 FFKKQVKIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAG 173

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW    K  +++  ++V NADE +PG   DR ++  +PH +IEG  IA++AIGA 
Sbjct: 174 FPTGLKWELAAKQKAEK-KFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQ 232

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+YVR E+    E L  A+++    G LG N     +  DI +  GAGA++CGEETAL
Sbjct: 233 KGFVYVRAEYPLAIERLSIALEQAREYGFLGENIMGTDFSFDIEIRIGAGAFVCGEETAL 292

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG++GQPR+KPP+P   GL+G PT +NNVE++A VP I+R GA  +  +G E + G
Sbjct: 293 MASIEGERGQPRVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTETSPG 352

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G V     VE  M IT  ELI +  GGI G    L AV  GG S  C+PA  +
Sbjct: 353 TKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIVGD-KKLKAVQTGGPSGGCIPAEYI 411

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              + D++ L+++G+ +G+  +IVMD    ++        F   ESCG+CTPCREGT  M
Sbjct: 412 DTPV-DFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKM 470

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++E++  G   + +I+ L +++  I+  ++C LG  A  P+   ++ FR
Sbjct: 471 LEILEKITSGEGTEEDIEELEKLANVIKDTSLCGLGQTAPNPVLSTLRYFR 521


>gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 607

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 160/411 (38%), Positives = 248/411 (60%), Gaps = 5/411 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q RI T NL  +    + + ++R  +  + K L+   + +I E+K SGLRGRGGAG
Sbjct: 111 FFKKQVRIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAG 170

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW    +  +++  ++V NADE +PG   DR ++  +PH +IEG  IA++AIGA 
Sbjct: 171 FPTGLKWELAARQKAEK-KFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQ 229

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+YVR E+    E L  A+++    G LG N     +  DI +  GAGA++CGEETAL
Sbjct: 230 KGFVYVRAEYPLAIERLNIALNQAREYGFLGGNIMGTDFSFDIEIRIGAGAFVCGEETAL 289

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG++GQP++KPP+P   GL+G PT +NNVE++A VP I+R GA  +  +G EN+ G
Sbjct: 290 MASIEGERGQPKVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTENSPG 349

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G V     VE  M IT  ELI +  GGI  G   L A+  GG S  C+PA  +
Sbjct: 350 TKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGI-AGDKKLKAIQTGGPSGGCIPAEYV 408

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              + D++ L+++G+ +G+  +IVMD    ++        F   ESCG+CTPCREGT  M
Sbjct: 409 DTPV-DFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKM 467

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++E++  G   + +I+ L +++  ++  ++C LG  A  P+   ++ FR
Sbjct: 468 LEILEKITSGEGTEEDIEELEKLAHVVKDTSLCGLGQTAPNPVLSTLRYFR 518


>gi|146331726|gb|ABQ22369.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 1
           precursor-like protein [Callithrix jacchus]
          Length = 215

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/204 (68%), Positives = 163/204 (79%)

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
           V PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH GG+ G
Sbjct: 1   VSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTG 60

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
           GWDNLLAVIPGGSS P +P       +MD+D L +  +GLGTAAVIVMDRSTDI+KAI R
Sbjct: 61  GWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIAR 120

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           L  FYKHESCGQCTPCREG  WM +VM R V+G AQ  EID L+E+SK IEG TICALGD
Sbjct: 121 LIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEISKQIEGHTICALGD 180

Query: 396 AAAWPIQGLIKNFRPLIEERIDQY 419
            AAWP+QGLI++FRP +EER+ ++
Sbjct: 181 GAAWPVQGLIRHFRPELEERMQRF 204


>gi|27904650|ref|NP_777776.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372475|sp|Q89AU2|NUOF_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|27904047|gb|AAO26881.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 444

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 228/373 (61%), Gaps = 10/373 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100
           +I+ +K SGL+GRGGAGF TG+KWS MP +  +  +  YL+ NADE EPGT KDR +M  
Sbjct: 51  VIDLIKQSGLKGRGGAGFLTGLKWSLMPPLNDEYGYTRYLLCNADEMEPGTYKDRFLMEK 110

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGY 157
            PH L+EG +I++FA+    ++I++RGE++     L+ ++ E    G LG N   S L +
Sbjct: 111 VPHQLLEGILISAFALSVTKSYIFLRGEYVNTERILKQSIIEATNYGYLGKNVCGSNLTF 170

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           +  I +H GAG YICGEETAL+ SLEG++  PR KPPFPA VGL+G PT VNNVE+++ V
Sbjct: 171 E--IFIHTGAGRYICGEETALINSLEGRRANPRFKPPFPAYVGLWGKPTCVNNVETLSNV 228

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           P I   G  WY G  +  + GTK+   SG V +P   E    IT  E+ E++ GG++   
Sbjct: 229 PAIFLNGVKWYKGLSKSLDTGTKMMGFSGSVKFPGIWELPFGITAREIFERYAGGMKNN- 287

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L    PGG+S   L    +    MD+  +K++GS LGTA  + +D S  I+  +  + 
Sbjct: 288 KKLKVWQPGGASTSFLIDKHL-DVPMDFVNIKKVGSRLGTALAMAVDDSVSIVSLVRNIE 346

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W++++++ L + I    +I++L ++ + +  GRT CA    
Sbjct: 347 EFFSRESCGFCTPCRDGLPWIVKILKVLEQKIGVPEDIEILEQLCEQLGPGRTFCAHAPG 406

Query: 397 AAWPIQGLIKNFR 409
           A  P++  +K FR
Sbjct: 407 AIEPLKSALKYFR 419


>gi|85858925|ref|YP_461127.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85722016|gb|ABC76959.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 638

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/393 (40%), Positives = 228/393 (58%), Gaps = 7/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+   + +G +  + K L E   D +I  VK SGLRGRGGAGF  G+KWSF+PK   D  
Sbjct: 224 SVDSYLEKGGYAAIKKALAEYQPDDVIAIVKDSGLRGRGGAGFPAGVKWSFLPK--GDMQ 281

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ NADE EPGT KDR +M   PH L+EG ++  +A GA   +IY+RGE+ R  E LQ
Sbjct: 282 KYVICNADEGEPGTYKDRILMEENPHGLLEGMMLCGYATGATVGYIYIRGEYRRSIERLQ 341

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+D+    G+LG N     +  DI +  G GAY+CGEE++L+ S+EGK+G PR +PPFP
Sbjct: 342 RAIDQAREKGILGDNIFGSSFRFDIFIKEGGGAYVCGEESSLMNSMEGKRGYPRFRPPFP 401

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  G    P+ VNNVE+ A VP I+ +GA+WY   G E   GTKL+ +SG +N    VE 
Sbjct: 402 AGAGFLAKPSNVNNVETYASVPMIIEKGAAWYKSVGLETCTGTKLYCLSGKLNRTGLVEM 461

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  T  E+IE    GI+ G     A +  G S   +   ++    +D D   + G  LG
Sbjct: 462 PMGTTLREIIETFGKGIKNGKTFKFAQV--GGSAGGILGPELMDLPLDIDSTIKAGVTLG 519

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  V+V D  T  +  +  +  F++HESCGQC PCR GT  +  +  +   G A   ++D
Sbjct: 520 SGVVLVCDEDTCPVDFLLDVLNFFEHESCGQCVPCRVGTRQLHHLARKFATGTAVPGDLD 579

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           L+ E +K ++  ++CALG +   PI  ++K FR
Sbjct: 580 LMVEKAKLMK-NSLCALGQSPILPITTMLKYFR 611


>gi|323703026|ref|ZP_08114682.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532039|gb|EGB21922.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 613

 Score =  300 bits (768), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 164/419 (39%), Positives = 249/419 (59%), Gaps = 6/419 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDS-MSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
            +  Q RI     G+      DS +S G +  ++K L+    + +I E+  SGLRGRGGA
Sbjct: 116 FIDKQQRIILKHCGVVNPEDIDSYLSVGGYKAIEKALKSMTPEQVIEEISRSGLRGRGGA 175

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWSF  K    R  Y++ NADE +PG   DR ++   PH+++EG +IA +A+GA
Sbjct: 176 GFPTGTKWSFARK-SPGREKYVICNADEGDPGAFMDRSVLESNPHSVLEGMLIAGYAMGA 234

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY+R E+    + L+ A+ +    G LGS+     +  +I++  GAGA++CGEETA
Sbjct: 235 ENGYIYIRAEYPLAIKRLKIAIAQALEKGYLGSHILDSNFSFNIMIREGAGAFVCGEETA 294

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G  R++PPFPA  G++G PT++NNVE+ A VP I+  G   +S FG EN++
Sbjct: 295 LIASVEGKRGMTRIRPPFPAQSGVWGKPTSINNVETFANVPWIILNGGDSFSRFGTENSK 354

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M IT +E++    GG+  G   L AV  GG S  C+PA  
Sbjct: 355 GTKVFALAGSIARGGLVEVPMGITINEIVYDVGGGLSSG-RKLKAVQTGGPSGGCIPA-S 412

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK++G+ +G+  +++MD ST ++        F K ESCG+CT CR GT  
Sbjct: 413 LADTQVDYDSLKKIGAIMGSGGMLIMDDSTCMVDVAKFFLKFTKSESCGKCTFCRVGTKQ 472

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +++++ER+  G  +  +I+LL E+ + I    +C LG     P+   IK FR   E  I
Sbjct: 473 LLKILERITNGEGRDGDIELLEELGQKISAGALCGLGQTVPNPVLTTIKYFRHEYEAHI 531


>gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
 gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
          Length = 597

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 157/375 (41%), Positives = 228/375 (60%), Gaps = 4/375 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ +K SGLRGRGGAGF TG+KW F      D+  Y++ NADE +PG   DR ++  +P
Sbjct: 155 VIDTIKKSGLRGRGGAGFPTGLKWQFTHDAIGDK-KYVLCNADEGDPGAFMDRSVLEGDP 213

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+E   IA +A+GA   +IYVR E+    + L  A+++    GLLGSN    G+  DI
Sbjct: 214 HALLEAMTIAGYAVGADQGYIYVRAEYPLAVKRLNIAINQAREYGLLGSNIFGTGFKFDI 273

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETAL+ S+EGK+G+PR +PPFPAN G++G PT +NNVE+ A VP I+
Sbjct: 274 DLRLGAGAFVCGEETALMTSIEGKRGEPRPRPPFPANKGVFGKPTLLNNVETYANVPQII 333

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             G  W++  G + ++GTK+F++ G +N    VE  M  T  E+I    GGI  G     
Sbjct: 334 LNGPEWFASIGTDKSKGTKVFALGGKINNTGLVEIPMGTTLREVIYDIGGGIPQG-KAFK 392

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A   GG S  C+PA Q     ++YD L ++GS +G+  +IVMD    ++        F  
Sbjct: 393 AAQTGGPSGGCIPA-QFLDMPIEYDSLIQIGSMMGSGGMIVMDEDNCMVDIARFFLQFTV 451

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  M+ +++R+V+G  ++ +I+LL  ++KNI+   +C LG  A  P+
Sbjct: 452 DESCGKCPPCRIGTKRMLEILDRIVEGKGKEGDIELLETLAKNIKASALCGLGQTAPNPV 511

Query: 402 QGLIKNFRPLIEERI 416
              +K FR   E  I
Sbjct: 512 LSTLKYFRDEYEAHI 526


>gi|254481135|ref|ZP_05094381.1| NADH oxidoreductase (quinone), F subunit [marine gamma
           proteobacterium HTCC2148]
 gi|41582334|gb|AAS07948.1| NADH-quinone oxidoreductase, F subunit [uncultured marine bacterium
           463]
 gi|214038930|gb|EEB79591.1| NADH oxidoreductase (quinone), F subunit [marine gamma
           proteobacterium HTCC2148]
          Length = 431

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 163/397 (41%), Positives = 230/397 (57%), Gaps = 7/397 (1%)

Query: 25  SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--KVCSDRPHYLVV 82
           + G +  +   L +  +  +  +K S LRGRGGAGF TGMKWSF+P    CS    YL+ 
Sbjct: 25  ANGGYQGLRAALAQSPEDCLQVLKDSNLRGRGGAGFPTGMKWSFVPMGDKCSPGHKYLIC 84

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           NADE EPGT KDR ++  +PH LIEG +++++ + A  A+I++R E+ +    LQ A+  
Sbjct: 85  NADEMEPGTFKDRLLLECDPHQLIEGMIVSAYTLQADVAYIFIRAEYHQATRLLQEAIAA 144

Query: 143 CYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
           C+  G LG +    GY +++ VH  AG YICGEETAL+ SLEGK+  PR KPPFP   GL
Sbjct: 145 CHEKGYLGQDILGTGYQLEMHVHSSAGRYICGEETALISSLEGKRANPRAKPPFPQVSGL 204

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
           +G PT VNNVE++  V  I+ RGA W+   G   + GTKL+ +SG V  P   E  M   
Sbjct: 205 WGRPTIVNNVETLCNVHHIIERGAEWFKSLGLTEDAGTKLYGVSGRVKNPGCWELPMGTP 264

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
             ++IE++ GG+  G+ NL   +PGG S   L    +  A MDYD + + GS +GT  +I
Sbjct: 265 VRQIIEEYAGGMEDGY-NLKGFLPGGGSTDFLTEEHLDLA-MDYDTIGKAGSRMGTGTMI 322

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
           ++D  T  +  +  L  F+  ESCG CTPCR+G  W  +V++ +  G  Q+ ++D L   
Sbjct: 323 ILDDKTCPVGFVKNLVAFFARESCGFCTPCRDGLPWSAQVLDDIQNGRGQEEDMDTLARQ 382

Query: 382 SKNIE--GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            K I   G T CAL   A  P+Q  +K F    E  +
Sbjct: 383 VKFIGAIGNTHCALAPGAMEPLQSAMKYFPEAFENHL 419


>gi|226327878|ref|ZP_03803396.1| hypothetical protein PROPEN_01759 [Proteus penneri ATCC 35198]
 gi|225203582|gb|EEG85936.1| hypothetical protein PROPEN_01759 [Proteus penneri ATCC 35198]
          Length = 404

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 164/385 (42%), Positives = 224/385 (58%), Gaps = 6/385 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +  EVK +GL+GRGGAGFSTG+KWS MPK  S    Y++ NADE EPGT KDR +M   P
Sbjct: 6   VTTEVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYILCNADEMEPGTYKDRLLMEELP 65

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +I + A+ A+  +I++RGE+I   + L+ A++E  A+G LG N    G D ++
Sbjct: 66  HLLIEGMIIGAHALKAYRGYIFLRGEYIEAAKHLRHAIEEAKAAGFLGKNIFGSGIDFEL 125

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G +G PT VNNVE++  VP I+
Sbjct: 126 FVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCNVPAII 185

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY G   G+  + GTKL   SG V +P   E     T  E++E + GG+R G   
Sbjct: 186 EHGKDWYIGLSEGKSPDAGTKLMGFSGRVKFPGLWELPFGTTAREILEDYAGGMRDGL-K 244

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A  PGG+    L    +    MD+  + + GS LGTA  + +D   +++     L  F
Sbjct: 245 LKAWQPGGAGTDFLTEDHLD-LPMDFGTIAKAGSRLGTALAMAVDNEINMVSLTRNLEEF 303

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W + ++  +  G  +  +I+ L  + +++  G T CA    A 
Sbjct: 304 FARESCGWCTPCRDGLPWSVEILRAIENGKGRPGDIETLEHLCRSLSPGHTFCAHAPGAV 363

Query: 399 WPIQGLIKNFRPLIEERIDQYHRCN 423
            P+Q  IK FR   E  I Q    N
Sbjct: 364 EPLQSAIKYFREEFEAGIIQEDYTN 388


>gi|297616330|ref|YP_003701489.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144167|gb|ADI00924.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
          Length = 407

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 162/409 (39%), Positives = 247/409 (60%), Gaps = 11/409 (2%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + ++ R+    YG +   ++ D ++ G + +++K     +  +I EVK SGLRGRGGAGF
Sbjct: 1   MAEELRVVLRNYGKINPLNIDDYINAGGYKSLEKARSMSQMDVIQEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           + G KW F  +  +D+  Y++ NADE EPGT KDR IM  +PH+++EG  I  +AIGA+ 
Sbjct: 61  NAGQKWMFAYQAQADQ-KYVICNADEGEPGTYKDRIIMESDPHSVLEGMAICGYAIGANK 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY RGE+    + L  A+ +  A G+LG       + DI V  GAGAY+CGEETAL+E
Sbjct: 120 GYIYCRGEYPYVVDILNTAIAQAKAKGVLG-------EFDIEVRMGAGAYVCGEETALIE 172

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG +G+PR KPPFP   GL+G P+ VNNVE+ A +  IL +GA WY+  G  +  GTK
Sbjct: 173 SIEGSRGEPRYKPPFPPVSGLWGKPSIVNNVETFANIAIILEKGADWYASLGAPSYPGTK 232

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           + +++G V     +E   + T  E++     G   G     AV  GG+S   +P   +  
Sbjct: 233 VLTLTGDVVNKKFIEVPTNTTIREVVYGFG-GGIPGGKKFKAVQIGGTSGGFIPESLLDT 291

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            I D+D +  +G+ LG+ AV+VMD + DI+  + R++ F++HESCG+C PCREGT  M +
Sbjct: 292 PI-DFDSMAAIGATLGSGAVLVMDETRDIVDVVERIAKFFEHESCGKCAPCREGTMRMYK 350

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +M ++ KG    +++ L+  + + +    +C LG AA  P+   IK+FR
Sbjct: 351 LMSKVNKGQGTAKDVALMERLGRVMSVACLCGLGQAAPTPVLTTIKHFR 399


>gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
 gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
          Length = 599

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 164/411 (39%), Positives = 245/411 (59%), Gaps = 6/411 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
             T Q +I T NL  +   S+ + ++R G++     I E   + +I+EVK S LRGRGGA
Sbjct: 111 FFTKQVKIATRNLGVIDPLSIDEYIARDGYFALHKAIKEMTPEEVISEVKKSELRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F+ K   D   Y++ NADE +PG   DR I+  +PH+++E   IA++A+GA
Sbjct: 171 GFPTGLKWEFVRKAKGDI-KYVICNADEGDPGAFMDRAILEGDPHSVVEAMTIAAYAVGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+    E    A++     G LG N    G+  DI +  GAGA++CGEETA
Sbjct: 230 QKGFIYVRAEYPLAIERFSKALETAREYGFLGKNILGTGFSFDIEIRIGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR+KPP+PA  GL+G PT +NNVE+ A +  I+  G  W++ +G E +R
Sbjct: 290 LINSIEGKRGVPRVKPPYPATYGLWGKPTLINNVETYANIAPIILHGGDWFAQYGVEGSR 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M IT  ELI +  GG+  G   L AV  GG S  C+P   
Sbjct: 350 GTKVFALAGKIKNTGLVEVPMGITLRELIYEIGGGVPDG-KKLKAVQTGGPSGGCIPEEH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I  YD LK++G+ +G+  +IVMD    ++        F   ESCGQCTPCR+GT  
Sbjct: 409 LDTPIT-YDNLKKLGTIIGSGGMIVMDEDDCMVDVAKFFLEFTVEESCGQCTPCRDGTKK 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           M+ ++E++  G   + ++++L E+ ++I   ++C LG  A  P+   ++ F
Sbjct: 468 MLEILEKITAGEGTEEDLEVLKELGEHIMKTSLCGLGQTAPQPVVSTMRYF 518


>gi|21672441|ref|NP_660508.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008857|sp|Q8K9Y3|NUOF_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|21623053|gb|AAM67719.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 447

 Score =  299 bits (766), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 158/386 (40%), Positives = 232/386 (60%), Gaps = 7/386 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ +K SGL+GRGGAGFSTG+KWS M K  S +  YL+ NADE EPGT KDR +M + P
Sbjct: 50  VVHLIKESGLKGRGGAGFSTGLKWSLMSKDNSSKIRYLLCNADEMEPGTYKDRFLMENIP 109

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG ++++FA+     +I++RGE+I+    L+ ++ E    G +GSN    G++ ++
Sbjct: 110 HQLIEGMLLSAFALNVSRGYIFLRGEYIKAEYILKKSIQEAINFGFIGSNILNSGFNFEL 169

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +H GAG YICGEETAL+ SLEG++  PR KPPFPA  GL+G PT VNNVE+++ VP+I+
Sbjct: 170 FLHTGAGRYICGEETALINSLEGRRANPRAKPPFPAVFGLWGKPTCVNNVETLSNVPSIV 229

Query: 222 RRGASWYSGFGRE-NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
             G +WY    +  +  GTKL   SG VN P   E     T  E++E +  G++ G   L
Sbjct: 230 LHGVNWYKKLSKSTDTTGTKLMGFSGKVNNPGVWELPFGTTAREILEDYARGMKSGLF-L 288

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            +  PGG+    L    +    MD+  + + GS LGTA  + +D  T++I  +  +  F+
Sbjct: 289 KSWQPGGAGTDFLIEKHL-DLPMDFTSIAKAGSRLGTAIAMAVDNKTNMISLVCNIEKFF 347

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAW 399
             ESCG CTPCREG  W+++++E L K    K ++  L  +  ++  G+T CA    A  
Sbjct: 348 SRESCGLCTPCREGLPWIVKILESLEKKEGHKNDVKNLERLCLDLSPGKTFCAHAPGAVE 407

Query: 400 PIQGLIKNFRPLIEE--RIDQYHRCN 423
           P+Q  IK FR   E    I +  +C+
Sbjct: 408 PLQSAIKYFRLEFEAGISIKKLKKCS 433


>gi|148653492|ref|YP_001280585.1| NADH-quinone oxidoreductase subunit F [Psychrobacter sp. PRwf-1]
 gi|148572576|gb|ABQ94635.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter sp. PRwf-1]
          Length = 537

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 162/395 (41%), Positives = 237/395 (60%), Gaps = 11/395 (2%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ +   LEK    + + +KA+ +RGRGGAGF+ G+KW+FM       P YL+ NADE E
Sbjct: 79  FEGLKTALEKAPKEVGDMIKAANVRGRGGAGFNAGLKWTFMTP-PDGGPRYLICNADEME 137

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR +M   P  LIEG +I + AIGA   +I++RGE+I   E L AA+DEC A+ L
Sbjct: 138 PGTFKDRLLMERLPFQLIEGMLITAHAIGATDGYIFIRGEYILAAERLMAAIDECLANNL 197

Query: 149 LGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           +G N  LG  +  ++ VH GAG YICGEETAL+  LEG++  PR KPPFP   G +G PT
Sbjct: 198 MGDNI-LGSEFSFNLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQVSGAWGRPT 256

Query: 207 TVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCTVEESMSITF 262
            VNNVE+++ +P I+  G  WY       G     GTK+F  SG VN P   E     T 
Sbjct: 257 VVNNVETLSNMPAIMINGVEWYQSLPNEKGNSTTPGTKIFGCSGLVNDPGLWELPFGYTA 316

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            E+IE   GG++ G   L A +PGG+S   L    +  A MD+D +++ GS +GT  ++V
Sbjct: 317 REIIEDFAGGMKDG-KRLKAWLPGGASTDFLTTEHLDVA-MDFDSIQKAGSRMGTGLIMV 374

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           +D S D++  +  L +F++ ESCG CTPCR+G  W ++++  +  G  Q+ +++ L  ++
Sbjct: 375 VDESQDMVPLLKNLEIFFQRESCGFCTPCRDGLPWGVKLLTAIDDGQGQQGDVEKLEGLT 434

Query: 383 KNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +++  G+T CA    A  P+   +K FR   + +I
Sbjct: 435 RDLWLGKTFCAHAPGAMEPLMSALKYFRHEFDSKI 469


>gi|294140411|ref|YP_003556389.1| NADH dehydrogenase I subunit F [Shewanella violacea DSS12]
 gi|293326880|dbj|BAJ01611.1| NADH dehydrogenase I, F subunit [Shewanella violacea DSS12]
          Length = 456

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 162/412 (39%), Positives = 240/412 (58%), Gaps = 12/412 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRP 77
            LS+ +S G +D + + ++   D +++ +K S LRGRGGAGF TG+KWSF+P+   + + 
Sbjct: 20  QLSEYLSHGGYDGLTRAMKMSSDELLDTIKQSNLRGRGGAGFPTGLKWSFVPRGADAPKE 79

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+VNADE EPG  KDR ++   PH +IEG +I    +GA   +I++RG++    E L 
Sbjct: 80  KYLIVNADEMEPGAFKDRWLLEQTPHQIIEGLLIGGLTLGATQGYIFLRGDYYLAEERLL 139

Query: 138 AAVDECYASGLLGSN------SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
            A++EC    LLG +          ++ +I +H  AG YICGEETAL+ ++EGK+  PR 
Sbjct: 140 QAIEECKQHQLLGRDILGRGIQGQAFNFEIHIHSSAGRYICGEETALINAMEGKRATPRA 199

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFP   GL+G PT VNNVE+   +P I+  G+ W+   G+  + GTK+F +SG V  P
Sbjct: 200 KPPFPQVAGLWGKPTIVNNVETFCNLPHIINFGSDWFKALGKGQDAGTKIFGVSGRVKRP 259

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M  +  E+IE H GG+  G+  L   +PGG S   L    +  A MDYD + ++
Sbjct: 260 GLWELPMGTSIREIIEHHAGGMCDGY-RLKGFLPGGGSTDFLLEEHL-DARMDYDEIGKL 317

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS +GT  +I++D     I  +  L  F+  ESCG CTPCREG  W + ++E++ +G  +
Sbjct: 318 GSRMGTGTIIILDDQYCPISMVLNLVRFFAQESCGWCTPCREGLPWAVSLLEKIERGEGE 377

Query: 372 KREIDLLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            ++I+ L  +      G T CAL   A  P+Q  +K FR   E  I+  H+C
Sbjct: 378 LKDIEQLENLCDFAAPGNTFCALAPGAVEPLQSALKFFRQDFEAHIN--HQC 427


>gi|293609135|ref|ZP_06691438.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024]
 gi|292829708|gb|EFF88070.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024]
 gi|325121085|gb|ADY80608.1| NADH dehydrogenase I chain F [Acinetobacter calcoaceticus PHEA-2]
          Length = 443

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 161/378 (42%), Positives = 228/378 (60%), Gaps = 7/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLDVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ D+
Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGSGWNFDL 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE H GG+R G   
Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMREGL-K 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA  +    MD D + + GS LGT  ++V+D +  ++     L  F
Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDADTIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA    A 
Sbjct: 352 FARESCGFCTPCRDGLPWAVKALKALEAGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+ G +K+FR   E ++
Sbjct: 412 EPLMGALKHFRGEFEAKV 429


>gi|289522359|ref|ZP_06439213.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504195|gb|EFD25359.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 590

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 162/418 (38%), Positives = 250/418 (59%), Gaps = 6/418 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAG 59
           +  Q RI     G+   + + +++SRG ++   K + E   D +I+EV  SGLRGRGGAG
Sbjct: 105 MAKQVRIVLRNCGIIDPEKIDEAISRGAYEAFSKAVKEMSPDEVIDEVYRSGLRGRGGAG 164

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F  +     P Y++ NADE +PG   DR ++  +PHT+IEG  I ++A+GA 
Sbjct: 165 FPTGLKWKFT-RQAKGEPKYVICNADEGDPGAFMDRSVLEGDPHTVIEGMAICAYAVGAS 223

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+    + L  A+D+    G LG N    G++ DI +  GAGA++CGEETAL
Sbjct: 224 HGYIYCRAEYPLAIKRLNIALDQARERGFLGDNVFGSGFNFDIEIKEGAGAFVCGEETAL 283

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR +PPFPA  G++G PT +NNVE+ A VP I+R GAS +S FG E ++G
Sbjct: 284 IASIEGKRGMPRPRPPFPAESGVWGKPTNINNVETYANVPWIIRHGASEFSAFGTEKSKG 343

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G V     +E  M +   E+I    GGI  G + + AV  GG S  C+P+  +
Sbjct: 344 TKVFALAGKVAKGGLIEIPMGMPIREVIYDIGGGIADGKE-IKAVQMGGPSGGCIPSWLL 402

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              + DY+ +   G+ +G+  +IV+D ++ ++        F + ESCG+C  CR GT  M
Sbjct: 403 DTPV-DYESITATGAIMGSGGMIVLDETSCVVDVAKFFLNFTQRESCGKCPFCRIGTKRM 461

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + ++ER+  G  +  ++DLLYE++  ++  ++C LG  A  P+   +K FR   E  +
Sbjct: 462 LEILERISNGEGKMEDLDLLYELALQVKEGSLCGLGQTAPNPVLTTLKYFREEYETHV 519


>gi|325290779|ref|YP_004266960.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966180|gb|ADY56959.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Syntrophobotulus glycolicus DSM 8271]
          Length = 650

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 173/421 (41%), Positives = 256/421 (60%), Gaps = 7/421 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFST 62
           Q+R+     GL   + +S   +   +  ++K+L+K + + +I EVK SGLRGRGGAGF T
Sbjct: 168 QNRVILKKCGLIDPERVSQYFAHQGYRALEKVLQKMKPEEVIEEVKQSGLRGRGGAGFPT 227

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSF      D+  YL+ NADE +PG   DR ++  +PH +IEG +I ++AIGA   +
Sbjct: 228 GLKWSFCRAAEGDK-KYLICNADEGDPGAFMDRSVLEGDPHAVIEGMLIGAYAIGAAEGY 286

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IY R E+    E L+ A+ +    GLLG N    G+   + +  GAGA++CGEETAL+ S
Sbjct: 287 IYCRAEYPLAVERLKTAIGQAEKYGLLGKNILNSGFHFKLRIKEGAGAFVCGEETALIAS 346

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++G PR++PP+PA  GL+G PT +NNVE+ A VP I+  GA WYS FG E ++GTK+
Sbjct: 347 IEGQRGMPRVRPPYPAVKGLWGKPTNINNVETWANVPHIILNGAGWYSQFGTEKSKGTKI 406

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G VN    VE  M IT  E+I    GGI+GG     A I GG S  CLP   M   
Sbjct: 407 FAMTGKVNNTGLVEVPMGITLREIIFDIGGGIKGGKKFKAAQI-GGPSGGCLPE-SMLDI 464

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+D L  +G+ +G+  + ++D +T ++        F ++ESCG+CTPCREGT  M+ +
Sbjct: 465 PVDFDSLGAVGAMVGSGGLTILDETTCMVDMARYFLNFTQNESCGKCTPCREGTKRMLEI 524

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+ KG  ++ +++ L  ++  I   ++C LG  A  P+   IK FRP  E  I +  R
Sbjct: 525 LVRITKGEGKEGDLENLERLAGVIRKTSLCGLGQTAPNPVSATIKYFRPEYEAHIKE-KR 583

Query: 422 C 422
           C
Sbjct: 584 C 584


>gi|91202657|emb|CAJ72296.1| similar to nuoF subunit of the NADH:ubiquinone oxidoreductase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 552

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 160/403 (39%), Positives = 245/403 (60%), Gaps = 5/403 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           K +S+ + R  +  ++K+L     D +I EVKASGLRGRGGAGF TG KW        D 
Sbjct: 149 KKISEYILRNGYAALEKVLSGMSPDKVIEEVKASGLRGRGGAGFPTGKKWESAKNAVGDE 208

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ N DE +PG   DR ++  +PH++IEG +I  +AIG+    IYVR E+    E +
Sbjct: 209 -KYVICNGDEGDPGAFMDRAVLEGDPHSVIEGMLICGYAIGSGKGIIYVREEYPIAVEHV 267

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +  + GLLG N    G+  DI V  GAGA++CGEETAL+ S+EG++G PR +PPF
Sbjct: 268 KIAIGDARSLGLLGENILGSGFHFDIEVKMGAGAFVCGEETALIASIEGERGMPRPRPPF 327

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE++A +P I+  GA ++S  G E+++GTK+F+++G VN    VE
Sbjct: 328 PAVSGLWGKPTNINNVETLANIPVIILEGAKYFSAIGTESSKGTKIFALAGSVNNTGLVE 387

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  EL+ +  GGI        A   GG S  C+P  Q     +DY+ +KE+G+ +
Sbjct: 388 VPMGTTLRELVFEIGGGIP-RRRQFKAAQMGGPSGGCVPE-QYLDTPIDYESVKEVGAIM 445

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +I+MD +T +++       F ++ESCG+CTPCR GT  M+ ++ R+  G  ++ +I
Sbjct: 446 GSGGLIIMDETTSMVEIARYFMEFCQNESCGKCTPCRVGTKRMLEILTRIANGEGEREDI 505

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            LL E+++     ++C LG  +A P+   ++ F+   EE I +
Sbjct: 506 GLLEELAEATRTSSLCGLGQTSANPVVSTLQYFKNEYEENIAK 548


>gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score =  299 bits (765), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 166/421 (39%), Positives = 248/421 (58%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q+R+     GL   + + D      +  + K+    +  +I+ +K SGLRGRGGAGFSTG
Sbjct: 134 QERVALRNCGLVDPEDIDDYFLHDGYTALHKVTGMEQQAVIDIIKNSGLRGRGGAGFSTG 193

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKW F     +D+  Y+V NADE +PG   DR I+  +PH++IE   I  +AIGA    +
Sbjct: 194 MKWQFALNNKADQ-KYVVCNADEGDPGAFMDRSILEGDPHSIIEAMAICGYAIGATKGLV 252

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    + L+ A++E   SG+LG+N    G++ DI + +GAGA++CGEETAL+ S+
Sbjct: 253 YIRAEYPLAIKRLKIALEEAKESGVLGTNIFNSGFEFDIEIKYGAGAFVCGEETALIHSM 312

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG +G+P  KPPFPA  G  G PT VNNVE++A +P I+ +GA W+  FG E + GTK+F
Sbjct: 313 EGHRGEPTTKPPFPAEHGYNGYPTNVNNVETLANIPVIINKGADWFKSFGTEKSSGTKVF 372

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G +N    +E  M  T  E+I +  GGI+ G     +V  GG S  CL    +  AI
Sbjct: 373 ALAGKINNVGLIEVPMGTTLREVIYEIGGGIKDG-KKFKSVQTGGPSGGCLTEKHLDVAI 431

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRV 361
            D+D L E GS +G+  +IVMD   D + A+ +  + F   ESCG+CTPCR G   ++ +
Sbjct: 432 -DFDSLMEQGSMMGSGGMIVMDED-DCMVAVSKFYLEFTVEESCGKCTPCRIGNQRLLEI 489

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +E++ KG   + ++  L E+S  I+  ++C LG  A  PI   + NF    E  +   H+
Sbjct: 490 LEKITKGNGTEDDLRKLKELSNVIKDTSLCGLGQTAPNPILSTLNNFWDEYEAHVKD-HK 548

Query: 422 C 422
           C
Sbjct: 549 C 549


>gi|262280142|ref|ZP_06057927.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260493|gb|EEY79226.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 443

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 161/378 (42%), Positives = 228/378 (60%), Gaps = 7/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLDVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ D+
Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGSGWNFDL 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE H GG+R G   
Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMREGL-K 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA  +    MD D + + GS LGT  ++V+D +  ++     L  F
Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDADTIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA    A 
Sbjct: 352 FARESCGFCTPCRDGLPWAVKALKALEVGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+ G +K+FR   E ++
Sbjct: 412 EPLMGALKHFRGEFEAKV 429


>gi|298507474|gb|ADI86197.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400]
          Length = 423

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 161/373 (43%), Positives = 224/373 (60%), Gaps = 6/373 (1%)

Query: 50  SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           + LRGRGGAGF TG KWSF+P+     P YL+ N DE EPGT KDR ++   P++L+EG 
Sbjct: 48  ANLRGRGGAGFPTGKKWSFVPRDIPG-PRYLICNCDEMEPGTYKDRILLEANPYSLVEGM 106

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAG 168
            +A++AIG   AFI++R  +    E+ + A+ E   +GLLG N    G+ +D+ VH  AG
Sbjct: 107 TLAAYAIGVAHAFIFIRRGYEEAAENCRRAIAEAKEAGLLGKNILGSGFSLDLDVHQSAG 166

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
            YICGEETAL+ +LEG++  PR KPPFPA  GL+G PT VNNVE++A +P I+  GA+W+
Sbjct: 167 RYICGEETALMNALEGRRANPRSKPPFPAVKGLWGRPTVVNNVETLANIPAIVANGATWF 226

Query: 229 SGFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
            G  R     GTKLF +SGHVN     E  + ++  E+I+  CGG+  G +   A IPGG
Sbjct: 227 KGLARISEAAGTKLFCVSGHVNNAACFELPLGMSLGEIIDGPCGGMLPGRE-FKACIPGG 285

Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347
           +S P     +     MD+D +   GS LGT  ++V DR+T ++ A   L  FY  ESCG 
Sbjct: 286 ASTPFF-TREHWNVPMDFDAVARAGSRLGTGGIVVFDRNTCMVAATLNLVSFYARESCGW 344

Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           CTPCREG  ++  V+ R+  G  ++  I +L E  + +     C L   A  P++GL++ 
Sbjct: 345 CTPCREGLPFVKDVLARIEAGAGREEHIAILREHVQYLN-YAFCPLAPGAMGPVEGLLRL 403

Query: 408 FRPLIEERIDQYH 420
           F   I E I   H
Sbjct: 404 FEDEIREHIVMGH 416


>gi|148262412|ref|YP_001229118.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
 gi|146395912|gb|ABQ24545.1| NADH dehydrogenase subunit F [Geobacter uraniireducens Rf4]
          Length = 433

 Score =  298 bits (764), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 170/410 (41%), Positives = 239/410 (58%), Gaps = 8/410 (1%)

Query: 19  SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + ++    G +D + K L E   + +   V  + LRGRGGAGF TG KWSF+P+     P
Sbjct: 25  TFTEYCGEGGFDALKKALKELSPNDVQQLVIDANLRGRGGAGFPTGKKWSFVPRDLPG-P 83

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            +L+ N DE EPGT KDR ++   P +L+EG ++A +AIG   AFI++R  +     +++
Sbjct: 84  RWLICNCDEMEPGTYKDRVLLEANPWSLVEGIILACYAIGVSHAFIFIRRGYETAAGNVR 143

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ E   +GL+G N    G+  DI +H  AG YICGEETAL+ +LEGK+  PR KPPFP
Sbjct: 144 RAIAEAKGAGLIGDNILGSGFSCDIDLHVSAGRYICGEETALMNALEGKRANPRSKPPFP 203

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255
           A  GL+G PT VNNVE++A +P I+  G +W+ G  +     GTKLF ISGHV     +E
Sbjct: 204 AVKGLWGGPTVVNNVETLANIPYIIANGPAWFKGLAKIPEAAGTKLFCISGHVQNTVCME 263

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + +   ++I+  CGG+  G     A IPGG+S P     + RG  MD+D + + GS L
Sbjct: 264 LPLGMPLGDIIDGPCGGMLPG-KRFKACIPGGASTPFF-TEEHRGVPMDFDTVAKAGSRL 321

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  +IV D  T ++ A   L  FY  ESCG CTPCREG  +++ V+ RL  G  +  +I
Sbjct: 322 GTGGIIVFDEETCLVGATLNLVKFYARESCGWCTPCREGLPFVVDVLARLEAGKGETEDI 381

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           D+L E  K +     CAL   A  P++GL++ F   I E I +  RC F 
Sbjct: 382 DILREHVKYLN-LAFCALAPGAMGPVEGLLRLFEEEIREHIIK-RRCPFS 429


>gi|262376773|ref|ZP_06070001.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter lwoffii
           SH145]
 gi|262308483|gb|EEY89618.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter lwoffii
           SH145]
          Length = 443

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/378 (42%), Positives = 226/378 (59%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  VKA+ ++GRGGAGF  G+KWS M    +  P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLEVVKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYLICNADEMEPGTFKDRLLMEDLP 114

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 115 HQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEALEQVRAKGYLGDNILGTGWNFEL 174

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 175 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 234

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY     G+  + GTK++  SG V +P   E     T  E+IE H GG+R G   
Sbjct: 235 LRGPEWYINLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMRDGL-K 293

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   L A  +    MD + + + GS LGT  ++V+D +  ++ A   L  F
Sbjct: 294 LKAWLPGGASTDFLAAEHID-LPMDAESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 352

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA    A 
Sbjct: 353 FARESCGFCTPCRDGLPWAVKALKALEDGTGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 412

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+ G +K FR   E ++
Sbjct: 413 EPLMGALKYFRGEFEAKV 430


>gi|307297600|ref|ZP_07577406.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916860|gb|EFN47242.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 599

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/412 (40%), Positives = 246/412 (59%), Gaps = 8/412 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T+Q RI T NL  +   S+ + ++R  +  + K+L E G D +I  ++ S L+GRGGA
Sbjct: 111 FFTEQVRIATRNLGVIDPLSIDEYIARDGYFALHKVLFEIGIDDVIEILRKSELKGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T MKW F  K   D   Y++ NADE +PG   DR ++  +PH+++E   IA+  +GA
Sbjct: 171 GFPTWMKWDFTKKAEGDT-KYVICNADEGDPGAFMDRAVLEGDPHSIVEAMTIAARVVGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEET 176
              F+YVR E+    E L  A+      G LG N  LG D   D+ +  GAGA++CGEET
Sbjct: 230 QKGFVYVRAEYPLAIERLTHAMKMAREYGFLGENI-LGTDFSFDLEIRIGAGAFVCGEET 288

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EGK+G PR+KPPFPAN GL+  PT +NNVE+ A +P I+  G  W+S FG E +
Sbjct: 289 ALINSIEGKRGIPRVKPPFPANKGLWQKPTLLNNVETFANIPPIINNGGEWFSQFGVEGS 348

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           RGTK+F+++G+V     VE  M IT  +LI +  GG+ GG   L A+  GG S  C+P  
Sbjct: 349 RGTKVFALAGNVKNTGLVEVPMGITLRKLIFEIGGGVPGG-KKLKAIQTGGPSGGCIPL- 406

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           ++    + YD +K++G+ +G+  +IVMD  + ++        F   ESCGQCTPCR+GT 
Sbjct: 407 ELIDTPITYDNMKKLGTIIGSGGMIVMDEDSCMVDVAKYFLEFTVEESCGQCTPCRDGTR 466

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            M+ ++ER+  G     ++ LL ++ +NI   ++C LG  A  P+   ++ F
Sbjct: 467 RMLEILERITSGEGTMEDLQLLKDLGENIMATSLCGLGQTAPQPVISTMRYF 518


>gi|256371185|ref|YP_003109009.1| NADH dehydrogenase (quinone) [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007769|gb|ACU53336.1| NADH dehydrogenase (quinone) [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 432

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 181/409 (44%), Positives = 241/409 (58%), Gaps = 31/409 (7%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           +LE   + +  EV  + L GRGGAGF  G KWS + K       YLVVN DESEP T KD
Sbjct: 35  LLELTPEQVHAEVLEANLLGRGGAGFEAGRKWSMLRKAPR---RYLVVNGDESEPATFKD 91

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
             ++  +PH L+EG  IA++AIGA  AFIY+RGEF    E +Q A+++ YA G LG N  
Sbjct: 92  HLLVERDPHQLVEGATIAAYAIGASVAFIYLRGEFALGLERVQQAINDAYARGALGRNIF 151

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVE 212
             G+ +DI++  GAGAYICGEETALLESLEGK+G PR+KPP FPA +GLYG PT VNNVE
Sbjct: 152 GSGFSLDIVLQPGAGAYICGEETALLESLEGKRGFPRIKPPYFPAVIGLYGAPTIVNNVE 211

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFDELIEKHCG 271
           +++ +P I+R G + +   G   + GT++F++SG V  P   E  M S+TF ELI     
Sbjct: 212 TVSNLPWIVRHGGAAFRALGAGRSTGTRIFALSGSVRRPGAFEVEMTSVTFRELIYGDAY 271

Query: 272 GIRGGWD-NLLAVIPGGSSVPC-------LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           G     D  L A IPGG S P        LP GQ        D + + GS LG+ ++IVM
Sbjct: 272 GQGLEPDRELRAFIPGGVSSPWLFPEHLDLPLGQ--------DEVAKAGSMLGSGSIIVM 323

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
           D     ++A WR++ F+  ESCGQCTPCREG  W+ +V+ RL  G  ++ ++DLL +   
Sbjct: 324 DDGDCPVRAAWRIARFFARESCGQCTPCREGGTWIEQVLRRLELGYGREEDLDLLLDACD 383

Query: 384 NIE--------GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           NI           TIC LG +    +   I+ FR +    I +  RC +
Sbjct: 384 NISPGVTWPPAQTTICVLGPSIPPSVVAAIRRFRDVFLTHIKE-ERCPY 431


>gi|91200210|emb|CAJ73254.1| strongly similar to proton-translocating NADH dehydrogenase I, 51
           kDa subunit (NuoF) [Candidatus Kuenenia stuttgartiensis]
          Length = 552

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/403 (39%), Positives = 245/403 (60%), Gaps = 5/403 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           K +S+ + R  +  ++K+L     D +I EVKASGLRGRGGAGF TG KW        D 
Sbjct: 149 KKISEYILRNGYVALEKVLSGMSPDKVIEEVKASGLRGRGGAGFPTGKKWESAKNAVGDE 208

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ N DE +PG   DR ++  +PH++IEG +I  +AIG+    IYVR E+    E +
Sbjct: 209 -KYVICNGDEGDPGAFMDRAVLEGDPHSVIEGMLICGYAIGSGKGIIYVREEYPIAVEHV 267

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +  + GLLG N    G+  DI V  GAGA++CGEETAL+ S+EG++G PR +PPF
Sbjct: 268 KIAIGDARSLGLLGENILGSGFHFDIEVKMGAGAFVCGEETALIASIEGERGMPRPRPPF 327

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE++A +P I+  GA ++S  G E+++GTK+F+++G VN    VE
Sbjct: 328 PAVSGLWGKPTNINNVETLANIPVIILEGAKYFSAIGTESSKGTKIFALAGSVNNTGLVE 387

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  EL+ +  GGI        A   GG S  C+P  Q     +DY+ +KE+G+ +
Sbjct: 388 VPMGTTLRELVFEIGGGIP-RRRQFKAAQMGGPSGGCVPE-QYLDTPIDYESVKEVGAIM 445

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +I+MD +T +++       F ++ESCG+CTPCR GT  M+ ++ R+  G  ++ +I
Sbjct: 446 GSGGLIIMDETTSMVEIARYFMEFCQNESCGKCTPCRVGTKRMLEILTRIANGEGEREDI 505

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            LL E+++     ++C LG  +A P+   ++ F+   EE I +
Sbjct: 506 GLLEELAEATRTSSLCGLGQTSANPVVSTLQYFKNEYEENIAK 548


>gi|104782525|ref|YP_609023.1| NADH dehydrogenase I subunit F [Pseudomonas entomophila L48]
 gi|95111512|emb|CAK16232.1| NADH dehydrogenase I chain F [Pseudomonas entomophila L48]
          Length = 454

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 167/399 (41%), Positives = 233/399 (58%), Gaps = 7/399 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L++  S+  +    K L E   D I+  VK SGL+GRGGAGF TG+KW  MPK  S    
Sbjct: 34  LAEYESKNGYAAARKALAEMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIR 93

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EP T KDR +M  +PH L+EG +I++ A+ A+  +I++RGE+    ++L  
Sbjct: 94  YLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNR 153

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 154 AIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 213

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVE 255
            VG++G PT VNNVE++  VP I+  G  WY    RE   + GTKL   SG V  P   E
Sbjct: 214 AVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWE 273

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++G+ +
Sbjct: 274 LPFGVTARELFEDYAGGMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRM 331

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L KG  +  +I
Sbjct: 332 GTGLAMAVDDSVNMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALEKGQGRAEDI 391

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
           + L  +   +  GRT CA    A  P+   IK FR   E
Sbjct: 392 ETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFE 430


>gi|39998530|ref|NP_954481.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA]
 gi|39985477|gb|AAR36831.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA]
          Length = 423

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/369 (43%), Positives = 223/369 (60%), Gaps = 6/369 (1%)

Query: 50  SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           + LRGRGGAGF TG KWSF+P+     P YL+ N DE EPGT KDR ++   P++L+EG 
Sbjct: 48  ANLRGRGGAGFPTGKKWSFVPRDIPG-PRYLICNCDEMEPGTYKDRILLEANPYSLVEGM 106

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAG 168
            +A++AIG   AFI++R  +    E+ + A+ E   +GLLG N    G+ +D+ VH  AG
Sbjct: 107 TLAAYAIGVAHAFIFIRRGYEEAAENCRRAIAEAKEAGLLGKNILGSGFSLDLDVHQSAG 166

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
            YICGEETAL+ +LEG++  PR KPPFPA  GL+G PT VNNVE++A +P I+  GA+W+
Sbjct: 167 RYICGEETALMNALEGRRANPRSKPPFPAVKGLWGRPTVVNNVETLANIPAIVANGAAWF 226

Query: 229 SGFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
            G  R     GTKLF +SGHVN     E  + ++  E+I+  CGG+  G +   A IPGG
Sbjct: 227 KGLARISEAAGTKLFCVSGHVNNAACFELPLGMSLGEIIDGPCGGMLPGRE-FKACIPGG 285

Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347
           +S P     +     MD+D +   GS LGT  ++V DR+T ++ A   L  FY  ESCG 
Sbjct: 286 ASTPFF-TREHWNVPMDFDAVARAGSRLGTGGIVVFDRNTCMVAATLNLVSFYARESCGW 344

Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           CTPCREG  ++  V+ R+  G  ++  I +L E  + +     C L   A  P++GL++ 
Sbjct: 345 CTPCREGLPFVKDVLARIEAGAGREEHIAILREHVQYLN-YAFCPLAPGAMGPVEGLLRL 403

Query: 408 FRPLIEERI 416
           F   I E I
Sbjct: 404 FEDEIREHI 412


>gi|82702146|ref|YP_411712.1| NADH-quinone oxidoreductase, F subunit [Nitrosospira multiformis
           ATCC 25196]
 gi|82410211|gb|ABB74320.1| NADH dehydrogenase subunit F [Nitrosospira multiformis ATCC 25196]
          Length = 425

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 167/415 (40%), Positives = 243/415 (58%), Gaps = 8/415 (1%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72
           G +   L+     G +  + K L      I   VK S LRGRGGAGF T  KWSF+P   
Sbjct: 12  GREPPDLAQYEKAGGYGALRKALGMAPAEIQAAVKESNLRGRGGAGFPTAQKWSFVPMGD 71

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            + RP YLV NADE EPGT KDR ++  +PH LIEG +I+++AI A  A++++R  +   
Sbjct: 72  DAPRPKYLVCNADEMEPGTFKDRMLLEGDPHQLIEGIIISAYAIQADVAYVFLRWAYKLA 131

Query: 133 RESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
              ++ A+ E Y  G LG N  LG  Y +++ +H  AG YICGEETALL +LEGK+  PR
Sbjct: 132 ARRVERAIVEAYRHGYLGKNI-LGSAYSLEMHLHVSAGRYICGEETALLNALEGKRANPR 190

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
            KPP+P   GL+G PT VN+VE++  VP I+++GA W+    R ++ GTKL+  SG V  
Sbjct: 191 AKPPYPQVSGLWGKPTIVNSVETLCNVPHIVKQGAEWFRSLSRSDDGGTKLYGASGRVKN 250

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E  M     E++E+H GG+R G+     V+PGG+S   + A  +  A MD+D +++
Sbjct: 251 PGLWELPMGTPLREILEEHAGGMRDGY-QFRGVLPGGASTDFVTAEHLDVA-MDFDSVQK 308

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT  +I++D  T  +  +  L  F+  ESCG CTPC  G  W+ ++++ + +G  
Sbjct: 309 AGSRLGTGTMIILDDKTCPVGMLLNLEHFFAQESCGWCTPCWSGLSWIEQILQDMEEGRG 368

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +  +++LL   ++ +  G T CAL   AA P+Q  +K FR   E  I +  RC +
Sbjct: 369 RASDLELLESHTRLLGPGHTFCALAPGAAEPLQSGLKYFRDDFERHIHE-KRCPW 422


>gi|167034691|ref|YP_001669922.1| NADH dehydrogenase subunit I F [Pseudomonas putida GB-1]
 gi|166861179|gb|ABY99586.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida GB-1]
          Length = 454

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/399 (41%), Positives = 234/399 (58%), Gaps = 7/399 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L++  S+  +    K L +  +D I+  VK SGL+GRGGAGF TG+KW  MPK  S    
Sbjct: 34  LAEYESKNGYAAARKALAQMSQDDIVQAVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIR 93

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EP T KDR +M  +PH L+EG +I++ A+ A+  +I++RGE+    ++L  
Sbjct: 94  YLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNR 153

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 154 AIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 213

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVE 255
            VG++G PT VNNVE++  VP I+  G  WY    RE   + GTKL   SG V  P   E
Sbjct: 214 AVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWE 273

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++G+ +
Sbjct: 274 LPFGVTARELFEDYAGGMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRM 331

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L KG  +  +I
Sbjct: 332 GTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALEKGQGRAEDI 391

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
           + L  +   +  GRT CA    A  P+   IK FR   E
Sbjct: 392 ETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFE 430


>gi|169634177|ref|YP_001707913.1| NADH dehydrogenase I chain F [Acinetobacter baumannii SDF]
 gi|169797054|ref|YP_001714847.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AYE]
 gi|213156540|ref|YP_002318201.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AB0057]
 gi|215484515|ref|YP_002326750.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii
           AB307-0294]
 gi|301347790|ref|ZP_07228531.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii
           AB056]
 gi|301510625|ref|ZP_07235862.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii
           AB058]
 gi|301595910|ref|ZP_07240918.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii
           AB059]
 gi|332852143|ref|ZP_08433970.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013150]
 gi|332867542|ref|ZP_08437695.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013113]
 gi|169149981|emb|CAM87875.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AYE]
 gi|169152969|emb|CAP02015.1| NADH dehydrogenase I chain F [Acinetobacter baumannii]
 gi|213055700|gb|ACJ40602.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AB0057]
 gi|213987937|gb|ACJ58236.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii
           AB307-0294]
 gi|332729515|gb|EGJ60854.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013150]
 gi|332733959|gb|EGJ65104.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013113]
          Length = 443

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/378 (42%), Positives = 229/378 (60%), Gaps = 7/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG+N    G++ ++
Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGNNILGSGWNFEL 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE+H GG+R G   
Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA  +    MD + + + GS LGT  ++V+D +  ++     L  F
Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA    A 
Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+ G +K+FR   E ++
Sbjct: 412 EPLMGALKHFRSEFEAKV 429


>gi|299771415|ref|YP_003733441.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter sp. DR1]
 gi|298701503|gb|ADI92068.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter sp. DR1]
          Length = 443

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 160/378 (42%), Positives = 228/378 (60%), Gaps = 7/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLDVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGSGWNFEL 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE H GG+R G   
Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMREGL-K 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA  +    MD D + + GS LGT  ++V+D +  ++     L  F
Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDADTIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA    A 
Sbjct: 352 FARESCGFCTPCRDGLPWAVKALKALEAGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+ G +K+FR   E ++
Sbjct: 412 EPLMGALKHFRGEFEAKV 429


>gi|349637|gb|AAA16062.1| NADH dehydrogenase subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 431

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 154/354 (43%), Positives = 217/354 (61%), Gaps = 4/354 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL  G  WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G   
Sbjct: 228 ILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-K 286

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F
Sbjct: 287 FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEF 345

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICA 392
           +  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA
Sbjct: 346 FARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCA 399


>gi|239501290|ref|ZP_04660600.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter baumannii AB900]
          Length = 443

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/378 (42%), Positives = 228/378 (60%), Gaps = 7/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFEL 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE+H GG+R G   
Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA  +    MD + + + GS LGT  ++V+D +  ++     L  F
Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA    A 
Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+ G +K+FR   E ++
Sbjct: 412 EPLMGALKHFRSEFEAKV 429


>gi|301062485|ref|ZP_07203131.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300443415|gb|EFK07534.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 540

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 160/420 (38%), Positives = 245/420 (58%), Gaps = 6/420 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q  I  N   +  + + + ++ G +  + K+L    R+ +I+E+K SGLRG GGAGF TG
Sbjct: 115 QRTILRNCGHIDPEEIEEYLAAGGYQTIKKVLLGMSREEVIDEIKRSGLRGLGGAGFPTG 174

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KW    K    +  Y++ N DE +PG  +DR +M   PH+++EG +IA++AIGA   +I
Sbjct: 175 RKWEVCYKAQGPK-KYVICNGDEGDPGAFQDRSVMEGTPHSVLEGMMIAAYAIGAQQGYI 233

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    + L+ A+ +    G LG +    G+D  I +  GAGA++CGEETAL+ S+
Sbjct: 234 YVRAEYPLAVKRLRIAISQAKQKGFLGKDILGSGFDFKIALFQGAGAFVCGEETALIASV 293

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG +G PRL+PPFPA  G+ G PT ++NV+++A +P I+ +GA  ++  G E ++GT +F
Sbjct: 294 EGFRGMPRLRPPFPAESGMEGKPTIIDNVKTLASIPVIIDQGAESFARVGTEKSKGTVVF 353

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G V     +E  M +T  E+I    GGI  G     AV  GG S  CLP   +   +
Sbjct: 354 ALTGKVENNGLIEVPMGMTLREIIFDIGGGIPDG-KTFKAVQTGGPSGGCLPESALDMPV 412

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            D+D LK  GS +G+  ++VMD  T ++        F + ESCGQCTPCR GT  +  ++
Sbjct: 413 -DFDSLKAAGSMMGSGGLVVMDEDTCMVDLARYFLDFTQRESCGQCTPCRLGTKQLFDIL 471

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             + KG  +  +IDLL E+S+ +   ++CALG  A  P+   I+ FR   E  I++  RC
Sbjct: 472 NDITKGQGRPEDIDLLLEISEAVSTHSLCALGKTAPNPVITTIRYFRDEYEAHINE-KRC 530


>gi|184157033|ref|YP_001845372.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter baumannii ACICU]
 gi|260555654|ref|ZP_05827874.1| NADH oxidoreductase (quinone), F subunit protein [Acinetobacter
           baumannii ATCC 19606]
 gi|332872608|ref|ZP_08440576.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6014059]
 gi|183208627|gb|ACC56025.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter baumannii ACICU]
 gi|260410565|gb|EEX03863.1| NADH oxidoreductase (quinone), F subunit protein [Acinetobacter
           baumannii ATCC 19606]
 gi|322506932|gb|ADX02386.1| nuoF [Acinetobacter baumannii 1656-2]
 gi|323516799|gb|ADX91180.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter baumannii TCDC-AB0715]
 gi|332739137|gb|EGJ69996.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6014059]
          Length = 443

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 159/378 (42%), Positives = 228/378 (60%), Gaps = 7/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFEL 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE+H GG+R G   
Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA  +    MD + + + GS LGT  ++V+D +  ++     L  F
Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA    A 
Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+ G +K+FR   E ++
Sbjct: 412 EPLMGALKHFRSEFEAKV 429


>gi|262369337|ref|ZP_06062665.1| NADH dehydrogenase subunit I F [Acinetobacter johnsonii SH046]
 gi|262315405|gb|EEY96444.1| NADH dehydrogenase subunit I F [Acinetobacter johnsonii SH046]
          Length = 443

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 158/378 (41%), Positives = 227/378 (60%), Gaps = 6/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +KA+ ++GRGGAGF  G+KWS M    +  P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYLICNADEMEPGTFKDRLLMEKLP 114

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA++ + A   +I++RGE+I     L  A+++  A G LG N    G++ ++
Sbjct: 115 HQLIEGMLIAAYTLEATHGYIFIRGEYIEAAAYLNEALEQVRAKGYLGENILGTGWNFEL 174

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 175 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 234

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE + GG+R G   
Sbjct: 235 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDYAGGMRDGL-K 293

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   L A  +    MD + + + GS LGT  ++V+D +  ++ A   L  F
Sbjct: 294 LKAWLPGGASTDFLAAEHID-LPMDAESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 352

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA    A 
Sbjct: 353 FARESCGFCTPCRDGLPWAVKALKALEDGTGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 412

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+ G +K FR   E ++
Sbjct: 413 EPLMGALKYFRGEFEAKV 430


>gi|163782978|ref|ZP_02177973.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881658|gb|EDP75167.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1]
          Length = 425

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 167/391 (42%), Positives = 236/391 (60%), Gaps = 11/391 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ + +  G +  ++K L    + II+ V+ S LRGRGGAGF TG KW F   V +  P 
Sbjct: 30  SIEEYLKEGGYQALEKALNMSPEEIIDWVEKSTLRGRGGAGFPTGTKWKFA--VQNPAPR 87

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y + NADESEPGT KDR ++  +PH L+EG +I+S+A+GA+ AFIY+RGE+      L  
Sbjct: 88  YFICNADESEPGTFKDRILIERDPHLLLEGMIISSYAVGANEAFIYIRGEYPAGYYILLD 147

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E    G LG +    G+D++I V  G GAYICGEETAL+ESLEGK+G PRLKPP+P 
Sbjct: 148 AIEEAKEKGFLGKDILGSGFDLEIYVARGGGAYICGEETALIESLEGKRGHPRLKPPYPV 207

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+G PT VNNVE+I  VP I+  G   Y   G  +  G KLF +SG V  P   E  
Sbjct: 208 QVGLFGRPTVVNNVETICNVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYELP 267

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M+ T  E+I K+ GG  G    + AV  G  ++ C  AG+     MDY      G G GT
Sbjct: 268 MNTTLREVIYKYAGGTVGN-KKVKAVFSG--ALDCF-AGEELDMPMDYS---PFGFG-GT 319

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             V+V+    DI++A  +++ FY+HE+CGQCTPCR G      +++R+ +G A +++ + 
Sbjct: 320 GTVMVLTEDDDIVEACLQVAKFYEHETCGQCTPCRVGCHEQAVLLDRIYRGEASEKDWEG 379

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
              +++ I+  +IC LG  A   I+  ++ F
Sbjct: 380 FVFINRYIQPTSICGLGAVAGRLIKQAMEKF 410


>gi|255318320|ref|ZP_05359555.1| NADH oxidoreductase, f subunit [Acinetobacter radioresistens SK82]
 gi|262379064|ref|ZP_06072220.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter
           radioresistens SH164]
 gi|255304632|gb|EET83814.1| NADH oxidoreductase, f subunit [Acinetobacter radioresistens SK82]
 gi|262298521|gb|EEY86434.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter
           radioresistens SH164]
          Length = 442

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 225/381 (59%), Gaps = 6/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  VKA+ ++GRGGAGF  G+KWS M    +  P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLEIVKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYLICNADEMEPGTFKDRLLMERLP 114

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 115 HQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILDTGWNFEM 174

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 175 YVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 234

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE+H GG+R G   
Sbjct: 235 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 293

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   L A  +    MD D + + GS LGT  ++V D +  ++ A   L  F
Sbjct: 294 LKAWLPGGASTDFLTADHI-DLPMDSDSIMKAGSRLGTCLLMVFDENQCMVSATRNLEEF 352

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ +  +  G  +  +I  L E++K +  G+T CA    A 
Sbjct: 353 FARESCGWCTPCRDGLPWSVKALRSIENGEGKMEDIQHLQELTKKLWIGKTFCAHAPGAM 412

Query: 399 WPIQGLIKNFRPLIEERIDQY 419
            P+Q  +K +R   E +I  +
Sbjct: 413 EPLQSALKYWRHEFEAKIKDH 433


>gi|292492184|ref|YP_003527623.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus
           Nc4]
 gi|291580779|gb|ADE15236.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus
           Nc4]
          Length = 430

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 154/382 (40%), Positives = 226/382 (59%), Gaps = 7/382 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100
           +   VK S LRGRGGAGF TGMKWSF+P +  D PH  YL+ NADE EPGT KDR +M  
Sbjct: 47  VQQTVKDSKLRGRGGAGFPTGMKWSFIP-MGDDAPHPKYLIANADEMEPGTFKDRLLMEG 105

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH L+E  +++S+A  A  A+I++R E+      L+ A  E    GLLG +    G+ +
Sbjct: 106 DPHQLLEAMIVSSYATQADVAYIFLRDEYKLAAHRLKQAAQEAREQGLLGKHILGSGFSL 165

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +  +H  AG YICGEETAL+ SLEGK+  PR KPP+P   GL+G PT VNNVE++  VP 
Sbjct: 166 EFHIHTSAGRYICGEETALVTSLEGKRAIPRQKPPYPQTCGLWGKPTVVNNVETLCNVPH 225

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  GA WY    R  + GTK++  SG V  P   E  M     E++E++ GG++ G+  
Sbjct: 226 IINHGAEWYQNLSRSEDGGTKIYGTSGRVKRPGAWELPMGTPIREILEEYAGGMQEGY-T 284

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
              ++PGG+S   L    +    MD+D + ++GS +GT  +I++D  T  +  +  L  F
Sbjct: 285 FRGLLPGGASTDFLVEEHLE-TPMDFDAVMKVGSRMGTGGMIILDDKTCPVAMVLNLERF 343

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W+  +++ + +G  Q  ++++L   ++ +  G+T C     A 
Sbjct: 344 FAQESCGWCTPCRDGLPWVAHILQAIEEGRGQMEDLEILEMHTQFLGPGKTFCMHAPGAM 403

Query: 399 WPIQGLIKNFRPLIEERIDQYH 420
            P+Q  +K FR   E+ I + H
Sbjct: 404 EPLQSALKYFREDFEQHIREQH 425


>gi|116515042|ref|YP_802671.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256896|gb|ABJ90578.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 438

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 158/377 (41%), Positives = 229/377 (60%), Gaps = 5/377 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           II  +K SGLRGRGGAGF TG+KW+ M K    ++  YL+ NADE EPGT KDR +M   
Sbjct: 52  IILLIKESGLRGRGGAGFPTGIKWNLMLKSNIKEKIRYLICNADEMEPGTYKDRFLMERL 111

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160
           PH LIEG +I +F +   CA+I++RG++    + L  ++DE Y  G LG N    G++ +
Sbjct: 112 PHQLIEGIIICAFTLHISCAYIFLRGDYYVAEKILNKSIDEAYQLGYLGKNILNSGFNFN 171

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + +H GAG YICGEETAL+ SLEG +  PR KPPFPAN GL+G PT +NNVE+++ +P I
Sbjct: 172 LFLHTGAGRYICGEETALINSLEGLRANPRFKPPFPANYGLWGKPTCINNVETLSNIPAI 231

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           ++ G+ WY    +  + GTKL   SG V  P   E  + IT  E++E + GG++     L
Sbjct: 232 IQHGSEWYKNLSKGKDSGTKLLGFSGKVKNPGLWELPLGITAREVLEDYAGGMKKNLF-L 290

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            A  PGG+    L    +    MD+   +E+GS LGT   + +D + +II  +  + +F+
Sbjct: 291 KAWQPGGAGTDILSHKDI-DIKMDFTSFQEIGSRLGTGISMAIDNNINIISLLINIEIFF 349

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAW 399
             ESCG CTPCREG  W++++++ L K   +K +I +L E+  ++  G+T CA    A  
Sbjct: 350 SRESCGFCTPCREGLPWIVKLLKNLEKKNGKKEDIKILDELCISLGPGKTFCAHAPGAIS 409

Query: 400 PIQGLIKNFRPLIEERI 416
           P++  +K FR   E  I
Sbjct: 410 PLKSALKLFRNEFENSI 426


>gi|170721053|ref|YP_001748741.1| NADH dehydrogenase subunit I F [Pseudomonas putida W619]
 gi|169759056|gb|ACA72372.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida W619]
          Length = 458

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 162/383 (42%), Positives = 225/383 (58%), Gaps = 6/383 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E   D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LAEMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M  +PH L+EG +I++ A+ A+  +I++RGE+    ++L  A+DE  A+GLLG N  
Sbjct: 110 RMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNRAIDEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +T  EL E + G
Sbjct: 230 LCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  L  G  +  +I+ L  +   +  GRT 
Sbjct: 348 LLRNMEEFFARESCGWCTPCRDGLPWSVKMLRSLENGQGRAEDIETLLGLVNFLGPGRTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIE 413
           CA    A  P+   IK FR   E
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFE 430


>gi|15616778|ref|NP_239990.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11133964|sp|P57256|NUOF_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|25285047|pir||D84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain F [imported] -
           Buchnera sp. (strain APS)
 gi|10038841|dbj|BAB12876.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 444

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 155/384 (40%), Positives = 234/384 (60%), Gaps = 8/384 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100
           +IN VK SGL+GRGGAGFSTG+KWS M +  S      YL+ NADE EPGT KDR ++  
Sbjct: 50  VINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRERGYLICNADEMEPGTYKDRLLIEK 109

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YD 158
            PH LIEG +++++A+    A+I++RGE+++    L+ ++ E    G +G N  LG  ++
Sbjct: 110 IPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHILKQSIQEAINFGFIGLNI-LGSNFN 168

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +++++H GAG YICGEETAL+ SLEG++  PR KPPFPA  GL+G PT VNNVE+++ VP
Sbjct: 169 IELVLHTGAGRYICGEETALINSLEGRRANPRSKPPFPAVFGLWGKPTCVNNVETLSNVP 228

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I+  G SWY    + ++ GTKL   SG+V  P   E     T  E++E +  G++ G+ 
Sbjct: 229 CIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF- 287

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           +L A  PGG+    L    +    MD+  + + GS LGTA  + +D  T ++  ++ +  
Sbjct: 288 SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRLGTALSMAVDNKTSMVSLVYNIEK 346

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAA 397
           F+  ESCG CTPCR+G  W++++++ L +    K ++  L ++  ++  G+T CA    A
Sbjct: 347 FFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGA 406

Query: 398 AWPIQGLIKNFRPLIEERIDQYHR 421
             P+Q  IK FR   E  I+   R
Sbjct: 407 IEPLQSAIKYFRSEFESGINIRKR 430


>gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
 gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
          Length = 596

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 170/417 (40%), Positives = 250/417 (59%), Gaps = 6/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +S+ + ++ G +D + K L E   + ++ EVK SGLRGRGG GF TG+KW
Sbjct: 119 VLANCGHINPESIEEYIAVGGYDALAKALTEMTPEQVVAEVKKSGLRGRGGGGFPTGLKW 178

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F      D+  Y+V NADE +PG   DR ++  +PH +IEG  I  +AIGA   ++YVR
Sbjct: 179 EFTRNAKGDK-KYVVCNADEGDPGAFMDRSVLEGDPHRVIEGMAICGYAIGADEGYVYVR 237

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + L+ A+ +    GLLG N    G++  + +  GAGA++CGEETALL S+EGK
Sbjct: 238 AEYPLAIKRLKLAIKQAEDMGLLGDNILGTGFNFHLKIKEGAGAFVCGEETALLASIEGK 297

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PPFPA  GL+G PT +NNVE+ A VP I+ RGA WY+  G E ++GTK+F+++
Sbjct: 298 RGMPRPRPPFPAISGLWGKPTNINNVETFANVPQIITRGADWYASIGTERSKGTKVFALT 357

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G +N     E  M IT  E+I    GGI GG     AV  GG S  CLP  ++    +DY
Sbjct: 358 GRINNTGLAEVPMGITMREIIYDIGGGIPGG-RKFKAVQIGGPSGGCLPE-ELLDLPIDY 415

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L + G+ +G+  ++VMD +T ++        F + ESCG+CTPCREGT  M+ ++ R+
Sbjct: 416 DSLTQAGAMMGSGGLVVMDETTCMVDVAKFFLNFTQSESCGKCTPCREGTKRMLEILTRI 475

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +G  +  +I LL +++KNI+   +C LG  A  P+   ++ FR   E  I+   RC
Sbjct: 476 TEGKGRPDDIALLEDLAKNIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIND-KRC 531


>gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
 gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
          Length = 625

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 160/411 (38%), Positives = 243/411 (59%), Gaps = 5/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + D+++ G ++  +K + E   + +I  +  S LRGRGGAGF TG KW
Sbjct: 147 VLKNCGHIDAEHIEDALAVGAYEAFEKAVFEMTPEAVIKTITQSNLRGRGGAGFQTGRKW 206

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S +     ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+ A   +IYVR
Sbjct: 207 SQVAGQ-KEKIRYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMMIAAYAVQAQEGYIYVR 265

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+      L+ A+ +    G+LG N    G+   + ++ GAGA++CGE +AL  S+EGK
Sbjct: 266 AEYPLAVSRLRIAIRQAEELGILGDNILGTGFSFHLHINRGAGAFVCGEGSALTASIEGK 325

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR+KPP     GL+G PT +NNVE+ A VP I++ GA WY+G G   + GTK F+++
Sbjct: 326 RGMPRVKPPRTVEKGLFGKPTVLNNVETYANVPMIVKHGADWYTGIGTPESPGTKAFALT 385

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G+VN    +E  M IT  E+I    GGIR G     AV  GG S  CL   Q+    MD+
Sbjct: 386 GNVNNTGLIEVPMGITLREIIFDIGGGIRDG-KKFKAVQIGGPSGGCLTESQLDSK-MDF 443

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L ++G+ +G+  ++VMD +T +++       F + ESCG+C PCREGT  M+ ++ER+
Sbjct: 444 DSLTKIGAMIGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKRMLEILERI 503

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V G  ++ +I+ L E++  IE   +C LG +A  P+   I+ FR   EE I
Sbjct: 504 VAGEGREGDIEELEELADMIENTALCGLGKSAPKPVISTIQAFREEYEEHI 554


>gi|116624103|ref|YP_826259.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227265|gb|ABJ85974.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 548

 Score =  296 bits (758), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 154/386 (39%), Positives = 236/386 (61%), Gaps = 8/386 (2%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G+   V  I E     +I +VK+S LRGRGGAG+ TG+KWS + K   ++  Y++ NADE
Sbjct: 144 GYAALVTAITEMSPQEVIEQVKSSSLRGRGGAGYPTGLKWSTVAKT-GEQQKYVICNADE 202

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR ++  +PH ++EG  IA+FA+GA   FIYVR E+    + L+ A+ +    
Sbjct: 203 GDPGAFMDRAVLESDPHRVLEGMAIAAFAVGAQKGFIYVRAEYPLAVKHLKGAIRQAERL 262

Query: 147 GLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
           GLLG++   ++  + +DI +  GAGA++CGEETAL+ S+EGK+G PR +PPFPA  GL+ 
Sbjct: 263 GLLGNSICGTRFSFHIDIRL--GAGAFVCGEETALIASIEGKRGTPRPRPPFPAESGLWE 320

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
           CPT +NNVE+ A +  ILR GA+W++  G E ++GTK+F+++G V     +E  M IT  
Sbjct: 321 CPTLINNVETFANIAPILRNGAAWFAAIGTERSKGTKVFALAGRVANTGLIEVPMGITLR 380

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+I +  GG+  G     AV  GG S  C+P   +   + DY+ L  +GS +G+  +IVM
Sbjct: 381 EIIHEIGGGVPDG-KRYKAVQTGGPSGGCIPEQHLDSPV-DYESLARIGSIMGSGGMIVM 438

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
           D+++ ++        F   ESCG+C PCR GT  M  ++E++  G A  +++ LL E+  
Sbjct: 439 DQTSCMVDVAKYFMEFCMSESCGKCIPCRAGTQQMHAILEKITAGEATAQDVALLEELCD 498

Query: 384 NIEGRTICALGDAAAWPIQGLIKNFR 409
            +   ++C LG +A  P+   +K FR
Sbjct: 499 LVRSTSLCGLGQSAPNPVVTTLKYFR 524


>gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana)
           tropicalis]
          Length = 1458

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 169/326 (51%), Positives = 212/326 (65%), Gaps = 14/326 (4%)

Query: 14  GLQGK--SLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFSTGMK 65
           GL G+  SL D  +RG +  + KIL         +D +I  VK SGLRGRGGAGF TG+K
Sbjct: 32  GLNGRNWSLKDYEARGGYAALRKILGADGGAGMTQDQVIATVKESGLRGRGGAGFPTGLK 91

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+    + H LV N+DE EPGTCKDRDI+ + PH +IEG +I ++A+G    + Y+
Sbjct: 92  WSFMPRQFPGQKH-LVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIGAYAMGISLGYNYI 150

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLE 183
            GE  +  E  +AA++E  A+G LG +  LG  +   +  HHG GAYICGEETALLESLE
Sbjct: 151 HGEIFQAYERFEAALEEARAAGYLG-DQILGSHFSFQLHAHHGFGAYICGEETALLESLE 209

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS
Sbjct: 210 GKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGPAYLECGKPNNGGTKIFS 269

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG V  P   E  +   F +L+E   GG+R G   L AVIPGGSS P LPA  M    M
Sbjct: 270 VSGDVERPGNYEIPLGTPFTKLLEL-AGGVRKG-RQLKAVIPGGSSSPVLPAHIMMDCTM 327

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDI 329
           DYD + + GS LG+ A+IVMD S D+
Sbjct: 328 DYDAISKAGSMLGSGALIVMDDSRDM 353


>gi|260551029|ref|ZP_05825234.1| NADH:ubiquinone oxidoreductase [Acinetobacter sp. RUH2624]
 gi|260405977|gb|EEW99464.1| NADH:ubiquinone oxidoreductase [Acinetobacter sp. RUH2624]
          Length = 443

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 159/378 (42%), Positives = 227/378 (60%), Gaps = 7/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFEL 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE H GG+R G   
Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMREGL-K 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA  +    MD + + + GS LGT  ++V+D +  ++     L  F
Sbjct: 293 LKAWLPGGASTDFLPADTID-LPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA    A 
Sbjct: 352 FARESCGFCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAM 411

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+ G +K+FR   E ++
Sbjct: 412 EPLMGALKHFRSEFEAKV 429


>gi|219682089|ref|YP_002468473.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621822|gb|ACL29978.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085900|gb|ADP65982.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086473|gb|ADP66554.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 444

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 154/380 (40%), Positives = 233/380 (61%), Gaps = 8/380 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100
           +IN VK SGL+GRGGAGFSTG+KWS M +  S      YL+ NADE EPGT KDR ++  
Sbjct: 50  VINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRERGYLICNADEMEPGTYKDRLLIEK 109

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YD 158
            PH LIEG +++++A+    A+I++RGE+++    L+ ++ E    G +G N  LG  ++
Sbjct: 110 IPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHILKQSIQEAINFGFIGLNI-LGSNFN 168

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +++++H GAG YICGEETAL+ SLEG++  PR KPPFPA  GL+G PT VNNVE+++ VP
Sbjct: 169 IELVLHTGAGRYICGEETALINSLEGRRANPRAKPPFPAVFGLWGKPTCVNNVETLSNVP 228

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I+  G SWY    + ++ GTKL   SG+V  P   E     T  E++E +  G++ G+ 
Sbjct: 229 CIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF- 287

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           +L A  PGG+    L    +    MD+  + + GS LGTA  + +D  T ++  ++ +  
Sbjct: 288 SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRLGTALSMAVDDKTSMVSLVYNIEK 346

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAA 397
           F+  ESCG CTPCR+G  W++++++ L +    K ++  L ++  ++  G+T CA    A
Sbjct: 347 FFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGA 406

Query: 398 AWPIQGLIKNFRPLIEERID 417
             P+Q  IK FR   E  I+
Sbjct: 407 IEPLQSAIKYFRSEFESGIN 426


>gi|219681533|ref|YP_002467918.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471214|ref|ZP_05635213.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624376|gb|ACL30531.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 444

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 155/384 (40%), Positives = 234/384 (60%), Gaps = 8/384 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100
           +IN VK SGL+GRGGAGFSTG+KWS M +  S      YL+ NADE EPGT KDR ++  
Sbjct: 50  VINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRERGYLICNADEMEPGTYKDRLLIEK 109

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YD 158
            PH LIEG +++++A+    A+I++RGE+++    L+ ++ E    G +G N  LG  ++
Sbjct: 110 IPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHILKQSIQEAINFGFIGLNI-LGSNFN 168

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +++++H GAG YICGEETAL+ SLEG++  PR KPPFPA  GL+G PT VNNVE+++ VP
Sbjct: 169 IELVLHTGAGRYICGEETALINSLEGRRANPRSKPPFPAVFGLWGKPTCVNNVETLSNVP 228

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I+  G SWY    + ++ GTKL   SG+V  P   E     T  E++E +  G++ G+ 
Sbjct: 229 CIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF- 287

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           +L A  PGG+    L    +    MD+  + + GS LGTA  + +D  T ++  ++ +  
Sbjct: 288 SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRLGTALSMAVDDKTSMVSLVYNIEK 346

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAA 397
           F+  ESCG CTPCR+G  W++++++ L +    K ++  L ++  ++  G+T CA    A
Sbjct: 347 FFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGA 406

Query: 398 AWPIQGLIKNFRPLIEERIDQYHR 421
             P+Q  IK FR   E  I+   R
Sbjct: 407 IEPLQSAIKYFRSEFESGINIRKR 430


>gi|313498027|gb|ADR59393.1| NADH-quinone oxidoreductase subunit F [Pseudomonas putida BIRD-1]
          Length = 458

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 161/377 (42%), Positives = 224/377 (59%), Gaps = 6/377 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M  
Sbjct: 56  DDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQ 115

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH L+EG +I++ A+ A+  +I++RGE+    ++L  A+DE  A+GLLG N    G+D 
Sbjct: 116 QPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNRAIDEAKAAGLLGKNILGSGFDF 175

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP 
Sbjct: 176 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPA 235

Query: 220 ILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           I+  G  WY    RE   + GTKL   SG V  P   E    +T  EL E + GG+R G+
Sbjct: 236 IVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDGF 295

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++  +  + 
Sbjct: 296 -KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNME 353

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L +G  +  +I+ L  +   +  GRT CA    
Sbjct: 354 EFFARESCGWCTPCRDGLPWSVKMLRALERGQGRAEDIETLLGLVNFLGPGRTFCAHAPG 413

Query: 397 AAWPIQGLIKNFRPLIE 413
           A  P+   IK FR   E
Sbjct: 414 AVEPLGSAIKYFRSEFE 430


>gi|301060418|ref|ZP_07201277.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300445472|gb|EFK09378.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 540

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 160/420 (38%), Positives = 243/420 (57%), Gaps = 6/420 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q  +  N   +  + + + ++ G +  + K+L    R+ +I+E+K SGLRG GGAGF TG
Sbjct: 115 QRTLLRNCGHIDPEEIEEYLAAGGYQTIKKVLLGMSREEVIDEIKRSGLRGLGGAGFPTG 174

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KW    K   D   Y++ N DE +PG  +DR +M   PH+++EG +IA++AIGA   +I
Sbjct: 175 RKWEVCYKA-QDTKKYVICNGDEGDPGAFQDRSVMEGTPHSVLEGMMIAAYAIGAQQGYI 233

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    + L+ A+ +    G LG +    G+D  I +  GAGA++CGEETAL+ S+
Sbjct: 234 YVRAEYPLAVKRLRIAISQAKKKGFLGKDILGSGFDFKIALFQGAGAFVCGEETALIASV 293

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG +G PRL+PPFPA  G+ G PT ++NV+++A +P I+  GA  +   G E ++GT +F
Sbjct: 294 EGFRGMPRLRPPFPAESGMEGKPTIIDNVKTLASIPIIIDEGAESFVRIGTEKSKGTVVF 353

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G V     +E  M +T  E+I    GGI  G     AV  GG S  CLPA  +   +
Sbjct: 354 ALTGKVENNGLIEVPMGMTLREIIFDIGGGIPDG-KAFKAVQTGGPSGGCLPASFLDMPV 412

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            D+D LK  GS +G+  ++VMD  T ++        F + ESCGQC PCR GT  +  ++
Sbjct: 413 -DFDSLKAAGSMMGSGGLVVMDEETCMVDLARYFLDFTQRESCGQCIPCRLGTKQLFDIL 471

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             + KG  +  +IDLL E+S+ +   ++CALG  A  P+   I+ FR   E  I++  RC
Sbjct: 472 NDITKGQGRPEDIDLLLEISEAVSTHSLCALGKTAPNPVITTIRYFRDEYEAHINE-KRC 530


>gi|159027690|emb|CAO89555.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 535

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 150/394 (38%), Positives = 243/394 (61%), Gaps = 10/394 (2%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + + ++ G + ++ K L E     ++ E+  SGLRGRGGAG+ TG+KW+ + K    +  
Sbjct: 132 IEEYIAVGGYQSLYKALYEMTPAQVVEEITKSGLRGRGGAGYPTGLKWATVAKQ-PGKQK 190

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ NADE +PG   DR ++  +PH ++EG  IA++A+GA   +IYVR E+    + LQ 
Sbjct: 191 YVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGADHGYIYVRAEYPLAIDRLQK 250

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A+++    GL+GS    S   + VDI +  GAGA++CGEETAL+ S+EG +G PR +PP+
Sbjct: 251 AINQAKKFGLMGSQVFESTFDFKVDIRI--GAGAFVCGEETALIHSIEGGRGTPRTRPPY 308

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL GCPT +NNVES A +  I+R GA+WY+  G   ++GTK+F+++G ++    +E
Sbjct: 309 PAQSGLDGCPTLINNVESYANIAAIIREGAAWYANIGTATSKGTKIFALTGKISNNGLIE 368

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M IT  E++E+  GG+  G   + AV  GG S  C+PA  +   + DY+ L ++GS +
Sbjct: 369 VPMGITLREIVEEMGGGVPDG--QVKAVQTGGPSGGCIPANLLDTPV-DYESLAKLGSMM 425

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  ++VMD ST ++K       F + ESCG+C PCR GT  M  ++ +++ G A   ++
Sbjct: 426 GSGGMVVMDDSTSMVKVAKFYMEFCREESCGKCIPCRTGTVQMFELLAKIIDGKADIHDL 485

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + L  + + ++  ++C LG +A  PI   ++ F+
Sbjct: 486 ENLEHLCQMVKETSLCGLGQSAPNPILSTLQYFK 519


>gi|311087054|gb|ADP67134.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 444

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 154/380 (40%), Positives = 233/380 (61%), Gaps = 8/380 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100
           +IN VK SGL+GRGGAGFSTG+KWS M +  S      YL+ NADE EPGT KDR ++  
Sbjct: 50  VINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRERGYLICNADEMEPGTYKDRLLIEK 109

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YD 158
            PH LIEG +++++A+    A+I++RGE+++    L+ ++ E    G +G N  LG  ++
Sbjct: 110 IPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHILKKSIQEAINFGFIGLNI-LGSNFN 168

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +++++H GAG YICGEETAL+ SLEG++  PR KPPFPA  GL+G PT VNNVE+++ VP
Sbjct: 169 IELVLHTGAGRYICGEETALINSLEGRRANPRSKPPFPAVFGLWGKPTCVNNVETLSNVP 228

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I+  G SWY    + ++ GTKL   SG+V  P   E     T  E++E +  G++ G+ 
Sbjct: 229 CIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWELPFGTTAREILEDYAHGMKSGF- 287

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           +L A  PGG+    L    +    MD+  + + GS LGTA  + +D  T ++  ++ +  
Sbjct: 288 SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRLGTALSMAVDDKTSMVSLVYNIEK 346

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAA 397
           F+  ESCG CTPCR+G  W++++++ L +    K ++  L ++  ++  G+T CA    A
Sbjct: 347 FFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDVKNLEKLCSHLSPGKTFCAHAPGA 406

Query: 398 AWPIQGLIKNFRPLIEERID 417
             P+Q  IK FR   E  I+
Sbjct: 407 IEPLQSAIKYFRSEFESGIN 426


>gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score =  295 bits (755), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 170/414 (41%), Positives = 253/414 (61%), Gaps = 5/414 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTG 63
           Q  + +N   +  +S+ + ++   +  V + L       +I+EVK +GLRGRGG GF TG
Sbjct: 118 QRVVLSNCGRVDPESIKEYIAEDGYQAVGETLTTMTSQEVIDEVKEAGLRGRGGGGFPTG 177

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW F      D+  Y++ NADE +PG   DR I+  +PH +IEG +IA++AIGA   +I
Sbjct: 178 IKWQFAHDSEDDK-KYIICNADEGDPGAFMDRSILEGDPHRVIEGMIIAAYAIGASEGYI 236

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    E L+ A+++    GLLG N  + G+D  + +  GAGA++CGEETAL+ S+
Sbjct: 237 YVRAEYPLAIERLEKAIEQAEEYGLLGDNLFESGFDFKLQIKKGAGAFVCGEETALMNSI 296

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G PR +PPFPA  GL+G P+ +NNVE+ A VP I+ +GA  YS  G E++ GTK+F
Sbjct: 297 EGKRGMPRPRPPFPAQKGLWGYPSNINNVETYANVPVIINQGADEYSKVGTEDSTGTKIF 356

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +I+G +      E  M IT  E+I    GGI GG D   AV  GG S  CLP  ++  ++
Sbjct: 357 AITGKIQNTGLAEVPMGITMREIIYDVGGGIMGGKD-FKAVQIGGPSGGCLPEEKLDLSV 415

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            DYD L E G+ +G+  ++VMD  T ++        F + ESCG+CTPCREGT  M+ ++
Sbjct: 416 -DYDSLIEAGAMMGSGGLVVMDEDTCMVDVAKFFLDFTQSESCGKCTPCREGTKRMLEIL 474

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +R+  G  ++ +I+LL E+S +I+  ++C LG +A  P+   I+ FR   E  I
Sbjct: 475 KRITAGEGKEGDIELLEELSHHIKSTSLCGLGQSAPNPVLSTIQYFRDEYEAHI 528


>gi|26990817|ref|NP_746242.1| NADH dehydrogenase I subunit F [Pseudomonas putida KT2440]
 gi|148546980|ref|YP_001267082.1| NADH dehydrogenase subunit I F [Pseudomonas putida F1]
 gi|24985823|gb|AAN69706.1|AE016606_9 NADH dehydrogenase I, F subunit [Pseudomonas putida KT2440]
 gi|148511038|gb|ABQ77898.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida F1]
          Length = 453

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 161/377 (42%), Positives = 223/377 (59%), Gaps = 6/377 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M  
Sbjct: 56  DDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQ 115

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH L+EG +I++ A+ A+  +I++RGE+    ++L  A+DE  A+GLLG N    G+D 
Sbjct: 116 QPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNRAIDEAKAAGLLGKNILGSGFDF 175

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP 
Sbjct: 176 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPA 235

Query: 220 ILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           I+  G  WY    RE   + GTKL   SG V  P   E    +T  EL E + GG+R G+
Sbjct: 236 IVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDGF 295

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++  +  + 
Sbjct: 296 -KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNME 353

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L  G  +  +I+ L  +   +  GRT CA    
Sbjct: 354 EFFARESCGWCTPCRDGLPWSVKMLRALENGQGRAEDIETLLGLVNFLGPGRTFCAHAPG 413

Query: 397 AAWPIQGLIKNFRPLIE 413
           A  P+   IK FR   E
Sbjct: 414 AVEPLGSAIKYFRSEFE 430


>gi|269926644|ref|YP_003323267.1| NADH dehydrogenase (quinone) [Thermobaculum terrenum ATCC BAA-798]
 gi|269790304|gb|ACZ42445.1| NADH dehydrogenase (quinone) [Thermobaculum terrenum ATCC BAA-798]
          Length = 580

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 168/421 (39%), Positives = 254/421 (60%), Gaps = 7/421 (1%)

Query: 5   QDRIFTNLYGLQG-KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI     G Q  +SL D ++ G +  ++K L E  +D II EVKAS LRGRGGAGF  
Sbjct: 139 QHRILLANCGWQNPESLEDYLALGGFSALEKALFEMSQDEIIAEVKASNLRGRGGAGFPA 198

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW    +   +RP Y++VNA E EP   KDR ++  +P+ +IEG +IA++A+G +  +
Sbjct: 199 GIKWE-SARSERNRPKYVIVNAHEGEPNVFKDRRLIEGDPYAVIEGLMIAAWAVGVNDGY 257

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYV  E+    E L  A+   +  GLLG +    G+D DI V  GAGAYI GE +A +  
Sbjct: 258 IYVGSEYPLAMERLNRAIRRMHQVGLLGKDILGSGFDFDIKVVPGAGAYISGEASAAIYG 317

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           ++G+KG PR KPP  A  GL+G PT VNNVE++A VP I+ +GA W++  G EN+ GTK+
Sbjct: 318 IQGQKGFPRTKPPRSAEAGLWGKPTVVNNVETLANVPHIINKGAQWFASIGTENSTGTKV 377

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS++G +N+   VE  M IT  +L+    GG+R G     AV+ GG S   LP   +   
Sbjct: 378 FSLAGDINHVSLVEADMGITMRDLLFVAGGGMRNG-AKFKAVLAGGISGGALPESTL-DL 435

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
             ++  L+  GS +G+   I+ D +T ++   +  + F + ESCG+C PCR GT   + +
Sbjct: 436 TNEFGTLEAEGSMMGSGGYIIYDENTCMVDLAFYCTRFNRDESCGKCVPCRIGTSAQLAM 495

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++R++KG+ ++ +ID L + S++I   ++C LG AA  P+  ++++FR  +E  I +  R
Sbjct: 496 LDRIMKGLGEEIDIDRLTQSSEDIIAYSLCGLGQAAPIPVLSVLRHFRDEVEAHIRE-KR 554

Query: 422 C 422
           C
Sbjct: 555 C 555


>gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Coprococcus catus GD/7]
          Length = 594

 Score =  295 bits (755), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 158/394 (40%), Positives = 229/394 (58%), Gaps = 4/394 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ + +  G ++ + ++L E   D +I  + ASGLRGRGGAGF TGMKW F      + 
Sbjct: 125 ESIDEYIGTGGYEALGRVLTEMSPDDVIETILASGLRGRGGAGFPTGMKWKFASGNRGNV 184

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA   +IYVR E+    E L
Sbjct: 185 QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGASQGYIYVRAEYPIAVERL 244

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             A+ +    GLLG N    G+D DI +  GAGA++CGEETAL+ S+EG +G+PR +PPF
Sbjct: 245 NIAIKQAREYGLLGKNIFDSGFDFDIDLRLGAGAFVCGEETALMTSIEGNRGEPRPRPPF 304

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+  PT +NNVE+ A +P I+  GA W++  G E ++GTK+F+++G +N    VE
Sbjct: 305 PAVKGLFASPTILNNVETYANIPQIILNGAEWFASMGTEKSKGTKVFAVNGKINNTGLVE 364

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T   +IE   GGI  G     A   GG S  C+PA  M   I DYD L  +GS +
Sbjct: 365 VPMGTTLRTIIEDIGGGIPNG-KKFKAAQTGGPSGGCIPAEHMDIPI-DYDNLISIGSMM 422

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD  T ++        F   ESCG+CTPCR GT  +  +++++ KG     ++
Sbjct: 423 GSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCTPCRVGTKRLYEMLDKITKGEGTLEDL 482

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           D + E+   I+   +C LG  A  P+   ++ FR
Sbjct: 483 DKMEELCYYIKDNALCGLGQTAPNPVLSTLRYFR 516


>gi|171362775|dbj|BAG15851.1| probable NADH-quinone oxidoreductase [Pseudomonas putida]
          Length = 459

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/377 (42%), Positives = 224/377 (59%), Gaps = 6/377 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M  
Sbjct: 56  DDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQ 115

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH L+EG +I++ A+ A+  +I++RGE+    ++L  A++E  A+GLLG N    G+D 
Sbjct: 116 QPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNRAIEEAKAAGLLGKNILGSGFDF 175

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP 
Sbjct: 176 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPA 235

Query: 220 ILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           I+  G  WY    RE   + GTKL   SG V  P   E    +T  EL E + GG+R G+
Sbjct: 236 IVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDGF 295

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++  +  + 
Sbjct: 296 -KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNME 353

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L KG  +  +I+ L  +   +  GRT CA    
Sbjct: 354 EFFARESCGWCTPCRDGLPWSVKMLRALEKGQGRAEDIETLLGLVNFLGPGRTFCAHAPG 413

Query: 397 AAWPIQGLIKNFRPLIE 413
           A  P+   IK FR   E
Sbjct: 414 AVEPLGSAIKYFRSEFE 430


>gi|325277474|ref|ZP_08143079.1| NADH dehydrogenase I subunit F [Pseudomonas sp. TJI-51]
 gi|324097390|gb|EGB95631.1| NADH dehydrogenase I subunit F [Pseudomonas sp. TJI-51]
          Length = 453

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/377 (42%), Positives = 223/377 (59%), Gaps = 6/377 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M  
Sbjct: 56  DDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQ 115

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH L+EG +I++ A+ A+  +I++RGE+    ++L  A+DE  A+GLLG N    G+D 
Sbjct: 116 QPHLLVEGMLISARALKAYRGYIFLRGEYTTAAKNLNRAIDEAKAAGLLGKNILGSGFDF 175

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP 
Sbjct: 176 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPA 235

Query: 220 ILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           I+  G  WY    RE   + GTKL   SG V  P   E    +T  EL E + GG+R G+
Sbjct: 236 IVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDGF 295

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++  +  + 
Sbjct: 296 -KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNME 353

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L  G  +  +I+ L  +   +  GRT CA    
Sbjct: 354 EFFARESCGWCTPCRDGLPWSVKMLRALENGQGRAEDIETLLGLVNFLGPGRTFCAHAPG 413

Query: 397 AAWPIQGLIKNFRPLIE 413
           A  P+   IK FR   E
Sbjct: 414 AVEPLGSAIKYFRSEFE 430


>gi|50083953|ref|YP_045463.1| NADH dehydrogenase I chain F [Acinetobacter sp. ADP1]
 gi|49529929|emb|CAG67641.1| NADH dehydrogenase I chain F [Acinetobacter sp. ADP1]
          Length = 443

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/380 (41%), Positives = 228/380 (60%), Gaps = 7/380 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VKA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLDVVKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA++ + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 114 HQLIEGMLIAAYTLEATQGYIFIRGEYIEAAQYLNEALEQARAKGYLGDNILGTGWNFEL 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 174 YVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE+H GG+R G   
Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   L A  +    MD + + + GS LGT  ++V+D +  ++ A   L  F
Sbjct: 293 LKAWLPGGASTDFLAAEHID-LPMDSESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +  +I  L E+++ +  G+T CA    A 
Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALENGEGKMEDIQHLQELTRKLWIGKTFCAHAPGAM 411

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+ G +K FR   E ++ +
Sbjct: 412 EPLMGALKYFRSEFEAKVAK 431


>gi|146307439|ref|YP_001187904.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas mendocina ymp]
 gi|145575640|gb|ABP85172.1| NADH dehydrogenase subunit F [Pseudomonas mendocina ymp]
          Length = 448

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/380 (41%), Positives = 225/380 (59%), Gaps = 6/380 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+  VK SGL+GRGGAGF TG+KW  MP   S    YL+ NADE EP T KDR +M   P
Sbjct: 59  IVQTVKDSGLKGRGGAGFPTGVKWGLMPTDESLDIRYLLCNADEMEPNTWKDRLLMEQLP 118

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++ A+ A+  +I++RGE++    +L  A++E  A+GLLG N    G+D ++
Sbjct: 119 HLLVEGMLISARALKAYRGYIFLRGEYVEAAHNLNRAIEEAKAAGLLGRNIFGSGFDFEL 178

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP I+
Sbjct: 179 FVHTGAGRYICGEETALINSLEGRRANPRAKPPFPAAVGVWGKPTCVNNVETLCNVPAIV 238

Query: 222 RRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           + G  WY    RE   + GTKL   SG V  P   E    I+  EL E+H GG+R G+  
Sbjct: 239 QHGVDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGISARELFEEHAGGMRDGY-R 297

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L    PGG+    L    +  A+M   G+ ++G+ +GT   + +D S +++  +  +  F
Sbjct: 298 LKCWQPGGAGTGFLLPEHL-DALMYAGGIAKVGTRMGTGLALAVDDSINMVSLLRNMEEF 356

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G   + +I  L  +   +  G+T CA    A 
Sbjct: 357 FARESCGWCTPCRDGLPWSVKILRALERGEGTREDIATLLGLVNFLGPGKTFCAHAPGAV 416

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+   IK FR   E  + Q
Sbjct: 417 EPLGSAIKYFREEFEAGVAQ 436


>gi|325960237|ref|YP_004291703.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
 gi|325331669|gb|ADZ10731.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
          Length = 619

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/407 (38%), Positives = 241/407 (59%), Gaps = 10/407 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           RI  N   +   ++   ++RG +  ++  L+   + +I ++K+SGLRGRGGAGF T MKW
Sbjct: 136 RILRNCGLIDPSNIKHYIARGGYSGLNSALKTKPEKVIEQMKSSGLRGRGGAGFPTWMKW 195

Query: 67  SFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            F    C D      YL+ NADE +PG   +R ++  +PH+++EG VIAS+AIG   A+I
Sbjct: 196 QF----CVDFDSVEKYLICNADEGDPGAFMNRSLLESDPHSVLEGIVIASYAIGVKEAYI 251

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y R E+    E L+ A+ +    GLLG N  + G+D++I +  GAGA++CGEETAL+ S+
Sbjct: 252 YCRAEYPLALERLKQAISQMRDVGLLGKNILETGFDLEIKIKEGAGAFVCGEETALIASI 311

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G PR +PPFP   GL+G PT +NNVE++A V  I++ G   +  FG   ++GTK F
Sbjct: 312 EGKRGMPRTRPPFPTTAGLWGKPTVINNVETMASVSLIMQTGHEQFKEFGTVESKGTKTF 371

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+ G+V  P  +E  +  T  E+I    GGI     N  AV  GG S  CLP  +     
Sbjct: 372 SLVGNVKKPGLIEVPLGTTLREVIYDIGGGIN-NEGNFKAVQIGGPSGGCLPE-EFLDTK 429

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DYD L   G+ +G+  ++VMD+++ ++        F ++ESCG+C PCR GT  M+ ++
Sbjct: 430 IDYDSLTMAGAIMGSGGLVVMDQNSCMVDVARYFLEFIQNESCGKCVPCRLGTKQMLDIL 489

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             + +G  ++ + DLL E+S+ I   ++C LG  +  PI   +K F 
Sbjct: 490 SDITQGKGKQGDNDLLRELSQGIRDGSLCGLGQTSPNPILTTLKYFE 536


>gi|330958155|gb|EGH58415.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 452

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 162/386 (41%), Positives = 225/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQTPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++     L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAARHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIEKGQGQPGDIETLQGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FRP  E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRPEFEAGI 433


>gi|71065155|ref|YP_263882.1| NADH dehydrogenase I, F subunit [Psychrobacter arcticus 273-4]
 gi|71038140|gb|AAZ18448.1| NADH dehydrogenase I, F subunit [Psychrobacter arcticus 273-4]
          Length = 474

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/390 (41%), Positives = 233/390 (59%), Gaps = 11/390 (2%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L +  D  +  +K + ++GRGGAGF  G+KWS M       P YLV NADE EPGT KDR
Sbjct: 71  LNQSPDDTLKTIKEAVVKGRGGAGFPAGIKWSLMAP-PDGGPRYLVCNADEMEPGTFKDR 129

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M   P  LIEG +I+++AIGA   +I++RGE+I   E L AA++E  A+ L+G N  L
Sbjct: 130 LLMERLPLQLIEGMLISAYAIGATAGYIFIRGEYILAAERLTAAIEELRANNLIGDNI-L 188

Query: 156 GYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
           G D   D+ VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+
Sbjct: 189 GSDFSFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTVVNNVET 248

Query: 214 IAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           +  V  I+  G+ WY       G     GTKLF  SG VN P   E     T  E+IE  
Sbjct: 249 LHNVSAIILHGSKWYQDLPKAKGVVETPGTKLFGCSGLVNDPGLWELPFGYTAREIIEDF 308

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
            GG++ G   L A +PGG+S   L A  +   ++D+D +++ GS +GT  ++V+D   D+
Sbjct: 309 AGGMQEG-RTLKAWLPGGASTDFLTAEHL-DTVVDFDTIQKAGSRMGTGLLMVVDEEQDM 366

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GR 388
           +  +  L +F++ ESCG CTPCR+G  W ++++  +  G  Q  +++ L  +++++  G+
Sbjct: 367 VPLVRNLEIFFQRESCGWCTPCRDGLPWGVKILTAINDGEGQMGDVEKLEGLTRDLWIGK 426

Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           T CA    A  P+   IK FRP  +++I Q
Sbjct: 427 TFCAHAPGAMEPLMSAIKYFRPEFDQKITQ 456


>gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 602

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 166/413 (40%), Positives = 246/413 (59%), Gaps = 8/413 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q +I T   G+   K++ + ++R  +  + K L E   + +I  VK SGLRGRGGA
Sbjct: 111 FFSRQVKIATRNVGIIDPKNIDEYIARDGYFALHKALKEMTPEEVIQVVKDSGLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   Y++ NADE +PG   DR I+  +PHT+IE   IA +AIGA
Sbjct: 171 GFPTGLKWEFARKSPGDE-KYMICNADEGDPGAFMDRSILEGDPHTIIEAMTIAGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEET 176
              F+YVR E+    E L  A+++    G LG N  LG D   DI +  GAGA++CGEET
Sbjct: 230 TKGFVYVRAEYPIAIERLTVALNQAREYGFLGENI-LGTDFSFDIEIRIGAGAFVCGEET 288

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EGK+GQPR+KPPFPA  GL+G P+ +NNVE++A VP I+  GASW+  +G E +
Sbjct: 289 ALMHSIEGKRGQPRVKPPFPAQKGLWGKPSNINNVETLACVPPIIYNGASWFRQWGTEKS 348

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+F+++G V     VE  M IT  ELI +  GG   G   + AV  GG S   +P  
Sbjct: 349 PGTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGSPTG-KKIKAVQTGGPSGGVIPE- 406

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           +     +DY+ L+++G+ +G+  +IV+D    ++        F   ESCG+CTPCREGT 
Sbjct: 407 EYFDTPVDYESLQKLGAIVGSGGLIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTK 466

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            M  +++++ KG   + +I++L  +   I+  ++C LG  A  P+   ++ ++
Sbjct: 467 KMYEILDKITKGEGTEEDIEILENLGNVIKDSSLCGLGQTAPNPVLSTLRYYK 519


>gi|70731260|ref|YP_261001.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens Pf-5]
 gi|68345559|gb|AAY93165.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 451

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/381 (42%), Positives = 226/381 (59%), Gaps = 6/381 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D I+  VK +GL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M 
Sbjct: 55  QDDIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLME 114

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH LIEG +I++ A+  +  +I++RGE+    + L+ AV+E  A+GLLG N    G+D
Sbjct: 115 QLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLRRAVEEAKAAGLLGKNILGSGFD 174

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP
Sbjct: 175 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVP 234

Query: 219 TILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  G  WY    RE   + GTKL   SG V  P   E    +T  EL E + GG+R G
Sbjct: 235 AIIGDGVEWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDG 294

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
           +  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++  +  +
Sbjct: 295 F-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSINMVSLLRNM 352

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L KG  Q+ +I+ L  +   +  G+T CA   
Sbjct: 353 EQFFARESCGFCTPCRDGLPWSVKLLMALEKGQGQQGDIETLLGLVGFLGPGKTFCAHAP 412

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            A  P+   IK FRP  E  I
Sbjct: 413 GAVEPLGSAIKYFRPEFEAGI 433


>gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
 gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
          Length = 906

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 165/408 (40%), Positives = 243/408 (59%), Gaps = 8/408 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + D ++ G +  + K L       +++EV  SGLRGRGGAGF TG KW+F      D 
Sbjct: 432 EDIDDYLASGGYGGLAKALTAMTPAQVVDEVTKSGLRGRGGAGFLTGRKWAFT-AAAPDT 490

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P Y+V NADE +PG   DR I+  +PH ++E   IA +AIGA   +IYVR E+      L
Sbjct: 491 PKYVVCNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGARQGYIYVRAEYPVAVHRL 550

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +   +GLLG +    G+  DI +  GAGA++CGEETALL S+ GK+G+PR +PP+
Sbjct: 551 EVAIAQARQAGLLGEDILGTGFSFDIDLRLGAGAFVCGEETALLHSVSGKRGEPRARPPY 610

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE+ A +P I+  GA+WY+  G E ++GTK+FS++G +N    +E
Sbjct: 611 PALSGLWGKPTLLNNVETYANIPQIIVNGAAWYAAMGTERSKGTKIFSLAGKINNTGLIE 670

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T   +I    GGI GG     AV  GG S  CLPA  +   I DYD L  +GS +
Sbjct: 671 VPMGTTLRTIIYDIGGGIPGG-KAFKAVQTGGPSGGCLPAEYLDTPI-DYDSLIAVGSMM 728

Query: 316 GTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           G+  +IVMD S D +  I R  + F + ESCG+CTPCR GT  ++ ++  + +G  + ++
Sbjct: 729 GSGGLIVMDES-DCMVDIARFYLEFTQDESCGKCTPCRIGTRRLLEIITGITEGKGEPKD 787

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           ++ L E+ ++I   ++C LG  A   +   ++ FR   E  I+ + RC
Sbjct: 788 LERLEELGRDIREASLCGLGQTAPNLVLSTLRYFRHEYEAHIN-HKRC 834


>gi|288817441|ref|YP_003431788.1| NADH dehydrogenase I chain F [Hydrogenobacter thermophilus TK-6]
 gi|288786840|dbj|BAI68587.1| NADH dehydrogenase I chain F [Hydrogenobacter thermophilus TK-6]
 gi|308751048|gb|ADO44531.1| NADH dehydrogenase (quinone) [Hydrogenobacter thermophilus TK-6]
          Length = 423

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 164/390 (42%), Positives = 234/390 (60%), Gaps = 11/390 (2%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           + + +  G +  ++K +    + I++ V  S LRGRGGAGF TG KW F   + +  P Y
Sbjct: 31  IEEYLKDGGYQALEKAINMSPEEIVDWVDKSQLRGRGGAGFPTGKKWKFA--IQNPAPRY 88

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+ NADESEPGT KDR ++  +PH LIEG +I+++A+GA+ AFIY+RGE+      L+ A
Sbjct: 89  LICNADESEPGTFKDRVLLERDPHLLIEGMIISAYALGANQAFIYIRGEYPAAYYILKDA 148

Query: 140 VDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           ++E    G LG +    G+D++I V  GAGAYICGEE+AL+ESLEGK+G PR KPPFP  
Sbjct: 149 IEEAKKKGFLGKDILGSGFDLEIYVAKGAGAYICGEESALIESLEGKRGFPRTKPPFPVQ 208

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT VNNVE++  +P I++ G   Y   G  +  G KLF +SG V  P   E  M
Sbjct: 209 YGLFGRPTVVNNVETLCNIPFIIKLGWEDYRYIGPSDYPGPKLFPVSGKVKKPGVYELPM 268

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
           + T  E++ K+ GG       + AV  G  ++ C  A ++    MDY  L   G G GT 
Sbjct: 269 NTTLREVVYKYAGGTINN-KKVKAVFSG--ALDCFSADELDTP-MDYSPL---GFG-GTG 320

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            VIV+     I++   +++ FY HESCGQCTPCR GT     ++E+++KG A +R+ +  
Sbjct: 321 TVIVLTEEDSIVEMCLKVAEFYAHESCGQCTPCRVGTYEQANLLEKIMKGTATERDWEGF 380

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             V+  I+  +IC LG  A   I+  +K F
Sbjct: 381 DFVNSYIQPTSICGLGAVAGRLIRQTMKKF 410


>gi|222054365|ref|YP_002536727.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221563654|gb|ACM19626.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 420

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 162/387 (41%), Positives = 232/387 (59%), Gaps = 7/387 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +   V  SGLRGRGGAGF TG KWSF+P+     P +L+ N DE EPGT KDR ++  
Sbjct: 39  DDVQQMVVDSGLRGRGGAGFPTGKKWSFVPRNLPG-PRWLICNCDEMEPGTYKDRVLLEA 97

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            P++LIEG ++A +AIG H AFI++R  +     +L+  + E   +  +G N    G+  
Sbjct: 98  NPYSLIEGILLACYAIGVHHAFIFIRRGYETAAANLRHGIAEADKAEFIGDNIMGSGFSC 157

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I VH  AG YICGEETAL+ +LEGK+  PR KPPFPA  GL+G PT VNNVE+++ +P 
Sbjct: 158 AIDVHVSAGRYICGEETALMNALEGKRANPRSKPPFPAVKGLWGGPTVVNNVETLSNIPA 217

Query: 220 ILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
           I+ +G++W+ G  +     GTKLF ISGHV     VE  M +T  E+I+  CGG+  G  
Sbjct: 218 IVAKGSAWFKGLAKVPEAAGTKLFCISGHVRNTVCVELPMGMTLGEIIDGPCGGMLPG-R 276

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              A IPGG+S P   A       MD+D + + GS LGT  ++V D +T ++     L  
Sbjct: 277 KFKACIPGGASTPFFTADHF-AVPMDFDAVAKAGSRLGTGGIVVFDENTCMVGVTLNLIR 335

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+  ESCG CTPCREG  ++  V+ R+ +G  ++ ++++L E    +   + CAL   A 
Sbjct: 336 FFARESCGWCTPCREGLPFVHEVLTRMEQGRGREEDLEILSEHVHYLN-YSFCALAPGAM 394

Query: 399 WPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            P++GL++ F+  I E I + + C F+
Sbjct: 395 GPVEGLLRLFKDEIREHIRK-NGCPFK 420


>gi|117618370|ref|YP_856314.1| NADH dehydrogenase I subunit F [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559777|gb|ABK36725.1| NADH-quinone oxidoreductase, f subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 455

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 165/399 (41%), Positives = 235/399 (58%), Gaps = 7/399 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +D   K L +   D I+  VK +GL+GRGGAGFSTG+KW  MPK  S    
Sbjct: 34  LDEYQSKQGYDAARKALGQMSPDEIVGTVKDAGLKGRGGAGFSTGVKWGLMPKDESMNIR 93

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EP T KDR +M   PH LIEG +I++ A+ A+  +I++RGE++    +L+ 
Sbjct: 94  YLLCNADEMEPNTYKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAANLRR 153

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV+E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 154 AVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPA 213

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVE 255
             G++G PT VNNVE++  VP I+  G +WY G       + GTKL   SG VN P   E
Sbjct: 214 VSGVWGKPTCVNNVETLCNVPAIIGNGVAWYQGLALPGSEDHGTKLMGFSGKVNNPGLWE 273

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               IT  EL E + GG++ G+  L A  PGG+    L    +  A M   G+ ++G+ +
Sbjct: 274 LPFGITARELFENYAGGMKPGY-RLKAWQPGGAGTGFLLPEHLD-AQMYAGGIGKVGTRM 331

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q  ++
Sbjct: 332 GTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDL 391

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
             L ++   +  G+T CA    A  P+   +K FR   E
Sbjct: 392 ATLEQLVSFLGPGKTFCAHAPGAIEPLGSAMKYFRSEFE 430


>gi|93005407|ref|YP_579844.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter
           cryohalolentis K5]
 gi|92393085|gb|ABE74360.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter
           cryohalolentis K5]
          Length = 474

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/390 (41%), Positives = 233/390 (59%), Gaps = 11/390 (2%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L +  D  +N +K + ++GRGGAGF  G+KWS M       P YLV NADE EPGT KDR
Sbjct: 71  LNQSPDDTLNTIKEAVVKGRGGAGFPAGIKWSLMAP-PDGGPRYLVCNADEMEPGTFKDR 129

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M   P  LIEG +I+++AIGA   +I++RGE+I   E L AA++E  A+ L+G N  L
Sbjct: 130 LLMERLPLQLIEGMLISAYAIGATAGYIFIRGEYILAAERLTAAIEELKANNLVGDNI-L 188

Query: 156 GYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
           G D   D+ VH GAG YICGEETAL+  LEG++  PR KPPFP   G +G PT VNNVE+
Sbjct: 189 GSDFSFDLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQVAGAWGRPTVVNNVET 248

Query: 214 IAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           +  V  I+  G+ WY       G     GTKLF  SG VN P   E     T  E+IE  
Sbjct: 249 LHNVSAIILHGSKWYQDLPKAKGVVETPGTKLFGCSGLVNDPGLWELPFGYTAREIIEDF 308

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
            GG++ G   L A +PGG+S   L A  +   ++D+D +++ GS +GT  ++V+D   D+
Sbjct: 309 AGGMQEG-RTLKAWLPGGASTDFLTAEHL-DTVVDFDTIQKAGSRMGTGLLMVVDEEQDM 366

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GR 388
           +  +  L +F++ ESCG CTPCR+G  W ++++  +  G  Q  +++ L  +++++  G+
Sbjct: 367 VPLVRNLEIFFQRESCGWCTPCRDGLPWGVKILTAINDGEGQIGDVEKLEGLTRDLWIGK 426

Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           T CA    A  P+   IK FRP  +++I Q
Sbjct: 427 TFCAHAPGAMEPLMSAIKYFRPEFDQKIAQ 456


>gi|332971174|gb|EGK10138.1| NADH-quinone oxidoreductase subunit F [Psychrobacter sp.
           1501(2011)]
          Length = 537

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 161/395 (40%), Positives = 234/395 (59%), Gaps = 11/395 (2%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ +   L K    + + +KA+ +RGRGGAGF+ G+KW+FM       P YL+ NADE E
Sbjct: 79  FEGLKTALSKAPKEVGDMIKAANVRGRGGAGFNAGLKWTFM-TPPDGGPRYLICNADEME 137

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR +M   P  LIEG +I + AIGA   +I++RGE+I   E L AA+DEC A+ L
Sbjct: 138 PGTFKDRLLMERLPFQLIEGMLITAHAIGATDGYIFIRGEYIVAAERLMAAIDECLANNL 197

Query: 149 LGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           +G N  LG D   ++ VH GAG YICGEETAL+  LEG++  PR KPPFP   G +G PT
Sbjct: 198 MGDNI-LGSDFSFNLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQVSGAWGRPT 256

Query: 207 TVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCTVEESMSITF 262
            VNNVE+++ +P IL  G  WY       G     GTK+F  SG VN P   E     T 
Sbjct: 257 VVNNVETLSNMPAILINGVEWYQSLPNEKGNTTTPGTKIFGCSGLVNDPGLWELPFGYTA 316

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            E+IE   GG++ G   L A +PGG+S   L    +    MD+D +++ GS +GT  ++V
Sbjct: 317 REIIEDFAGGMKQG-KRLKAWLPGGASTDFLTTEHLD-VPMDFDTIQKAGSRMGTGLIMV 374

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           +D S D++  +  L +F++ ESCG CTPCR+G  W ++++  +  G  +  +++ L  ++
Sbjct: 375 VDESQDMVPLLKNLEIFFQRESCGFCTPCRDGLPWGVKLLTAIDDGQGKVGDVEKLEGLT 434

Query: 383 KNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +++  G+T CA    A  P+   +K FR   + +I
Sbjct: 435 RDLWLGKTFCAHAPGAMEPLMSALKYFRHEFDSKI 469


>gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 616

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 157/368 (42%), Positives = 225/368 (61%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  VK SGLRGRGGAGFSTG KW F  K  ++R  Y+  NADE +PG   DR I+  +P
Sbjct: 174 VIQTVKTSGLRGRGGAGFSTGTKWEFASKNEAER-KYVCCNADEGDPGAFMDRSILEGDP 232

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161
           H++IE   IA +AIG++  +IYVR E+      L+ A+ +    GLLG N    G+D D+
Sbjct: 233 HSVIEAMAIAGYAIGSNQGYIYVRAEYPIAVHRLKIAISQARNYGLLGRNILDSGFDFDV 292

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETAL+ S+EGK+G+PR++PPFPA  GL+  PT +NNVE++A V  IL
Sbjct: 293 DIRLGAGAFVCGEETALMASIEGKRGEPRVRPPFPAEKGLWQEPTILNNVETLANVAPIL 352

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA W++  G   ++GTK+F+I G +     VE  M  T  E++ +  GGI GG     
Sbjct: 353 LNGAEWFADLGTLKSKGTKVFAIGGKIANTGLVEIPMGTTLREIVYEIGGGIPGG-KAFK 411

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A   GG S  C+PA  +   I DY+ L E+GS +G+  +IVMD  T ++        F  
Sbjct: 412 AAQTGGPSGGCIPAKHIDAPI-DYESLIELGSMMGSGGLIVMDEDTCMVDIAKFFLEFTV 470

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+CTPCR GT  M  +++++ +G   ++++D L   ++ I   ++CALG  A  P+
Sbjct: 471 DESCGKCTPCRVGTRMMYDILDKITQGNGTEKDLDELERYARVITKTSLCALGQTAPNPV 530

Query: 402 QGLIKNFR 409
              +K FR
Sbjct: 531 LSTLKYFR 538


>gi|296388898|ref|ZP_06878373.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PAb1]
 gi|313107679|ref|ZP_07793861.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa 39016]
 gi|310880363|gb|EFQ38957.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa 39016]
          Length = 448

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/388 (40%), Positives = 229/388 (59%), Gaps = 6/388 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + +  +D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++    +L  A+DE  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    R    + GTKL   SG V  P   E    ++  EL E + G
Sbjct: 230 LCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L A  PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-QLKAWQPGGAGTGFLLPEHLD-AQMFAGGIAKVGTRMGTGLAMAVDDSINMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q  +++ L ++   +  G+T 
Sbjct: 348 LLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           CA    A  P+   +K FR   E  I +
Sbjct: 408 CAHAPGAVEPLGSALKYFRAEFEAGISR 435


>gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
 gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
          Length = 595

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 223/370 (60%), Gaps = 4/370 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + +I  +  SGLRGRGGAGF TG+KW F     +D+  Y+  NADE +PG   DR ++  
Sbjct: 151 EEVIQVILDSGLRGRGGAGFPTGLKWKFAAANEADQ-KYVCCNADEGDPGAFMDRSVLEG 209

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH ++E   IA +AIGA   +IYVR E+    E L  A+++    GLLG N  + G+D 
Sbjct: 210 DPHVVLEAMAIAGYAIGASQGYIYVRAEYPIAVERLNIAIEQAREYGLLGKNIFETGFDF 269

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI +  GAGA++CGEETAL+ S+EG +G+PR +PPFPA  GL+  PT +NNVE++A +P 
Sbjct: 270 DIDIRLGAGAFVCGEETALMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETLANIPQ 329

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  GA W+S  G E ++GTK+F++ G VN    VE  M  T  E++E+  GGI  G   
Sbjct: 330 IILNGAEWFSSMGTEKSKGTKVFALGGKVNNTGLVEIPMGTTLREIVEEIGGGIPNG-KK 388

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A   GG S  C+PA      I DYD L  +GS +G+  +IVMD    ++        F
Sbjct: 389 FKAAQTGGPSGGCIPAEHFDVPI-DYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLEF 447

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR GT  M+ ++E++  G     ++D L E++ +++  ++CALG  A  
Sbjct: 448 TVDESCGKCTPCRVGTRRMLEILEKITNGQGTMEDLDKLEELAAHLKTNSLCALGQTAPN 507

Query: 400 PIQGLIKNFR 409
           P+   ++ FR
Sbjct: 508 PVLSTMRYFR 517


>gi|254282080|ref|ZP_04957048.1| NADH dehydrogenase i chain f [gamma proteobacterium NOR51-B]
 gi|219678283|gb|EED34632.1| NADH dehydrogenase i chain f [gamma proteobacterium NOR51-B]
          Length = 417

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 162/376 (43%), Positives = 225/376 (59%), Gaps = 6/376 (1%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTL 105
           +K S LRGRGGAGF TGMKWSF+P   +   H YL+ NADE EPGT KDR +M  +PH L
Sbjct: 29  IKDSNLRGRGGAGFPTGMKWSFVPMDNATPGHKYLICNADEMEPGTFKDRLLMECDPHQL 88

Query: 106 IEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVH 164
           IEG +++++ + A  A+I++R E+ +    L+ A+  C+  G LG N    G+ +++ VH
Sbjct: 89  IEGMILSAYTLQADIAYIFIRAEYHKAIGLLREAITACHEKGYLGDNILGSGFSLEMHVH 148

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
             AG YICGEETAL+ SLEGK+  PR KPPFP   GL+G PT VNNVE++  +  IL  G
Sbjct: 149 VSAGRYICGEETALISSLEGKRANPRAKPPFPQVSGLWGRPTIVNNVETLCNIHHILEFG 208

Query: 225 ASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI 284
           A W+   G+  + GTKL+ +SG V  P   E  +  +  E+IE H GG+  G+ +L   +
Sbjct: 209 ADWFQALGKGEDAGTKLYGVSGRVKNPGCWELPIGTSIREIIEDHAGGMEDGY-SLRGFL 267

Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES 344
           PGG S   L    +  A MDY  + + GS +GT  +IV+D  T  I  I  L+ F+  ES
Sbjct: 268 PGGGSTDFLTPEHLDLA-MDYGTIGKAGSRMGTGTMIVLDDKTCPIGFIHNLTSFFARES 326

Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL-YEVSK-NIEGRTICALGDAAAWPIQ 402
           CG CTPCR+G  W  +V+E L  G  +  +++ L Y++      G T CAL   A  P+Q
Sbjct: 327 CGFCTPCRDGLPWSAQVLESLENGDGRPEDLETLAYQIDYIGAIGNTHCALAPGAMEPVQ 386

Query: 403 GLIKNFRPLIEERIDQ 418
             +K FR   E  I++
Sbjct: 387 SALKYFREDFEAHINE 402


>gi|15597837|ref|NP_251331.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PAO1]
 gi|107102161|ref|ZP_01366079.1| hypothetical protein PaerPA_01003211 [Pseudomonas aeruginosa PACS2]
 gi|152984500|ref|YP_001347930.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PA7]
 gi|218891198|ref|YP_002440064.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa LESB58]
 gi|81540766|sp|Q9I0J7|NUOF_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|9948709|gb|AAG06029.1|AE004692_8 NADH dehydrogenase I chain F [Pseudomonas aeruginosa PAO1]
 gi|150959658|gb|ABR81683.1| NADH oxidoreductase (quinone), f subunit [Pseudomonas aeruginosa
           PA7]
 gi|218771423|emb|CAW27190.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa LESB58]
          Length = 448

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 159/388 (40%), Positives = 229/388 (59%), Gaps = 6/388 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + +  +D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++    +L  A+DE  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    R    + GTKL   SG V  P   E    ++  EL E + G
Sbjct: 230 LCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L A  PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-QLKAWQPGGAGTGFLLPEHLD-AQMFAGGIAKVGTRMGTGLAMAVDDSINMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q  +++ L ++   +  G+T 
Sbjct: 348 LLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           CA    A  P+   +K FR   E  I +
Sbjct: 408 CAHAPGAVEPLGSALKYFRAEFEAGISR 435


>gi|227326163|ref|ZP_03830187.1| NADH dehydrogenase I subunit F [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 431

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 149/327 (45%), Positives = 209/327 (63%), Gaps = 5/327 (1%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            +D +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M
Sbjct: 47  AQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLM 106

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGY 157
             EPH L+EG +I++FA+ A+  +I++RGE+I     L+ A++E  A+GLLG N    G+
Sbjct: 107 EQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIEEAKAAGLLGKNILGSGF 166

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G++G PT VNNVE++  V
Sbjct: 167 DFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGVWGKPTCVNNVETLCNV 226

Query: 218 PTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
           P I+  GA+WY G   G+  + GTKL   SG V  P   E     T  E++E + GG+R 
Sbjct: 227 PAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRD 286

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
           G   L A  PGG+    L    +    MD++ + + GS +GTA  + +D   +++     
Sbjct: 287 GL-KLKAWQPGGAGTDFLTESHL-DLPMDFEHIAKAGSRMGTALAMAVDHEINMVSLTRN 344

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVM 362
           L  F+  ESCG CTPCR+G  W ++++
Sbjct: 345 LEEFFSRESCGWCTPCRDGLPWSVKIL 371


>gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter
           bemidjiensis Bem]
 gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative
           [Geobacter bemidjiensis Bem]
          Length = 636

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 170/422 (40%), Positives = 250/422 (59%), Gaps = 7/422 (1%)

Query: 4   DQDRIFTNL-YGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFS 61
           +Q R+   L   +  KSL D ++ G +  + K +L+   + +I EVK + LRGRGGAGF 
Sbjct: 134 NQQRLILGLNTKIDPKSLEDYLAVGGYQAMAKALLQMTPEEVIGEVKGAKLRGRGGAGFP 193

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G KW F      D+  Y+VVN DE +PG   DR +M   P T++EG +I ++AIGA   
Sbjct: 194 SGTKWEFARNAPGDQ-KYVVVNCDEGDPGAYMDRSLMEGNPFTVLEGLLIGAYAIGASEG 252

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+    ++L  A+ +    G LG N    G+D  + VH GAGA+ICGEET+LL+
Sbjct: 253 YIYVRQEYPLAVDNLTVAIKKAEEHGFLGKNILGSGFDFTVKVHRGAGAFICGEETSLLQ 312

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+P+ +PPFPA  GL+G PT +NNVE+ A +P I+ +GA ++S  G E+++GTK
Sbjct: 313 SLEGKPGEPKPRPPFPAVRGLWGKPTNINNVETWANIPVIINKGADYFSSIGTESSKGTK 372

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G VN    VE  M +   ++I K  GG+  G     AV  GG S  C+P  +   
Sbjct: 373 IFSLVGKVNNTGLVEVPMGMPLRDIIFKIGGGVPNG-KKFKAVQTGGPSGGCIPE-EYLD 430

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L +MG+ +G+  +IVMD  T ++        F   ESCG+C PCREG   M++
Sbjct: 431 VKVDFDELMKMGAMMGSGGMIVMDEDTCLVDIARYFLEFLSDESCGKCVPCREGIRQMLK 490

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM  + +G  ++ +I+LL  ++   +G  +CALG  A  P+   +K FR   E  I +  
Sbjct: 491 VMTAITQGKGKEGDIELLENMAMATQGAALCALGKTAPNPVLSTLKYFRHEYEAHIKE-K 549

Query: 421 RC 422
           RC
Sbjct: 550 RC 551


>gi|304312244|ref|YP_003811842.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1]
 gi|301797977|emb|CBL46199.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1]
          Length = 423

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 162/407 (39%), Positives = 227/407 (55%), Gaps = 4/407 (0%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           G+    L D    G ++     L      +++ VKAS LRGRGGAGF TGMKWSF+P   
Sbjct: 12  GMNPPRLVDYQQSGGYEGFRNALRMKPAEVVDLVKASNLRGRGGAGFPTGMKWSFVPPGE 71

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
             +  Y++ NADE EPGT KDR ++  +PH  +EG +IA+ A+ A   +I++R E+    
Sbjct: 72  PGQVRYVIANADEMEPGTYKDRWLLEGDPHQFLEGMMIAAHAVQALTGYIFLRCEYTLAA 131

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             LQ A++E   + LLG N    G++  + +H  AG YICGEETAL+ SLEG++  PR K
Sbjct: 132 RRLQEAIEENTRANLLGKNILGSGFNFSLHLHSSAGRYICGEETALINSLEGRRAVPRAK 191

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFP   GL+G PT VNNVE+   +P ILR G  W+ G G   + GTK+F  SG V  P 
Sbjct: 192 PPFPQVSGLWGKPTVVNNVETFCNLPHILRHGPEWFIGLGLVKDAGTKIFGASGRVKTPG 251

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  M     E+ EK+ GG++ G+      +PGG S   L   Q     M+YD + + G
Sbjct: 252 AWELPMGTPIREIFEKYAGGMQDGY-RFRGFLPGGGSTDFL-VEQHLDLPMEYDVIGKAG 309

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S +GT  +IV+D  T  +  +  L  F+  ESCG CTPCR+G      ++  + +G  Q 
Sbjct: 310 SRMGTGQLIVLDDRTCPVAMVLNLVRFFAQESCGWCTPCRDGLPHAGHILMEIEQGRGQA 369

Query: 373 REIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           R+++ L   ++ +  G T CAL   A  P+Q  +K FR   E  I Q
Sbjct: 370 RDLEKLEGFTRFLAPGNTYCALAPGAVEPLQSALKYFREDFERHIQQ 416


>gi|302038847|ref|YP_003799169.1| NADH-quinone oxidoreductase subunit F [Candidatus Nitrospira
           defluvii]
 gi|300606911|emb|CBK43244.1| NADH-quinone oxidoreductase, subunit F [Candidatus Nitrospira
           defluvii]
          Length = 425

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 171/387 (44%), Positives = 241/387 (62%), Gaps = 10/387 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRH 100
           I+ E+K +GLRGRGGAGF TG KW    KV + R    Y V NA E EPGT KDR +++H
Sbjct: 35  IVGEIKKAGLRGRGGAGFPTGTKWD---KVLNHRVQERYFVCNAGEHEPGTFKDRHLLKH 91

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH LIEGC+IAS  + A  ++IYV  E+  E  +L+ A+ +    GLLG N    G D+
Sbjct: 92  IPHQLIEGCLIASRTVNAKASYIYVNHEYAEEEANLRKAITQARERGLLGKNILGTGVDL 151

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF-PANVGLYGCPTTVNNVESIAVVP 218
           D+ V+ G G+Y+ GEETA+LES++G+   PR KPPF P + GLYG PT VNNVE++  +P
Sbjct: 152 DLEVYSGHGSYVAGEETAMLESMQGRPAMPRQKPPFYPTDFGLYGKPTLVNNVETLCNIP 211

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL+ GA+W++  G E   GT LFS+SG VN P   E  M +T  +LIE   GG+  G  
Sbjct: 212 QILKNGAAWFTQVGTEKCPGTMLFSLSGSVNRPGVYEMPMGVTIRDLIETCGGGVPNG-R 270

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
            + AV PGG +   + A Q+    MD+D LK+ G+GLG+A  IV+D +T ++ A  + S 
Sbjct: 271 KIKAVFPGGPAFSMVTADQLD-LPMDFDSLKKAGTGLGSAGTIVIDDATCMVAATLKYSN 329

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+K ESCGQC PCR GT  +  +M+++ +G   ++++D L ++   ++G   C L   AA
Sbjct: 330 FFKGESCGQCPPCRMGTINLATLMDKIERGEGSRKDLDSLLQLCGFVKGTGYCTLITGAA 389

Query: 399 WPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +Q  ++ F+   EE I +  RC FQ
Sbjct: 390 VLVQSSLRLFQHEFEEHI-RLQRCPFQ 415


>gi|197116576|ref|YP_002137003.1| NADH dehydrogenase I subunit F [Geobacter bemidjiensis Bem]
 gi|197085936|gb|ACH37207.1| NADH dehydrogenase I, F subunit [Geobacter bemidjiensis Bem]
          Length = 421

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 160/370 (43%), Positives = 226/370 (61%), Gaps = 8/370 (2%)

Query: 50  SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           SGLRGRGGAGF TG KWSF+P+     P +++ N DE EPGT KDR ++ H P++LIEG 
Sbjct: 48  SGLRGRGGAGFPTGKKWSFVPRDLPG-PRWIICNCDEMEPGTYKDRVLLEHNPYSLIEGM 106

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167
            +A +A+G    FI++R  + +  E+L  A+DE    G LG    LG  + +DI +H  A
Sbjct: 107 TLACYALGVRHGFIFIRKGYEQAAENLARAIDEAKKEGFLGERI-LGSEHSIDIDLHLSA 165

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           G YICGEETAL+ +LEGK+  PR KPPFPA  GL+  PT VNNVE++A +P IL RGA+W
Sbjct: 166 GRYICGEETALINALEGKRPNPRQKPPFPAVKGLWAGPTVVNNVETLANIPGILARGAAW 225

Query: 228 YSGFG-RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
           + G        G+KLF +SG V     VE  + I   ++I+  CGG+R G     A IPG
Sbjct: 226 FKGLAMNPEGAGSKLFCVSGSVKDRACVELPIGIPLGDIIDGPCGGMRLG-KRFKACIPG 284

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G+S   L A  ++   MDYD + ++GS LG+  +IV D+   +++A   L  F+  ESCG
Sbjct: 285 GASTQFLTAEHLK-VPMDYDPVAKVGSRLGSGGIIVFDQDHCLVEATLNLITFFARESCG 343

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
            CTPCREG  ++  ++ R+  G  ++ +I +L E  K +   + CAL   A  P+ GL++
Sbjct: 344 WCTPCREGLPYVREILTRIETGYGKEDDIAILREHIKYLN-YSFCALAPGAMAPLDGLLR 402

Query: 407 NFRPLIEERI 416
           +F   + E I
Sbjct: 403 HFEDEVREHI 412


>gi|24372603|ref|NP_716645.1| NADH dehydrogenase I subunit F [Shewanella oneidensis MR-1]
 gi|24346628|gb|AAN54090.1|AE015546_7 NADH dehydrogenase I, F subunit [Shewanella oneidensis MR-1]
          Length = 461

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 166/402 (41%), Positives = 236/402 (58%), Gaps = 7/402 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  ++  +D V K L +   D I++ VK +GL+GRGGAGF TG+KW  MPK  S    
Sbjct: 40  LEEYQTKQGYDAVRKALGQMSPDEIVSTVKDAGLKGRGGAGFPTGVKWGLMPKDESMNIR 99

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EP T KDR +M   PH LIEG +I++ A+ A+  +I++RGE++    +L+ 
Sbjct: 100 YLLCNADEMEPNTWKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAINLRR 159

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV+E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 160 AVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPA 219

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVE 255
             G++G PT VNNVE++  VP I+  G +WY         + GTKL   SG VN P   E
Sbjct: 220 VSGVWGKPTCVNNVETLCNVPAIIGNGVAWYHTLALPGSEDHGTKLMGFSGKVNNPGVWE 279

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               IT  EL E + GG+R G+  L A  PGG+    L    +  A M   G+ ++G+ +
Sbjct: 280 LPFGITARELFEGYAGGMRSGY-RLKAWQPGGAGTGFLLPEHLD-AQMYTAGIGKVGTRM 337

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT   + +D S  ++  +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q+ ++
Sbjct: 338 GTGLAMAVDDSISMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRSLERGEGQEGDL 397

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             L ++   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 398 ATLEQLCNFLGPGKTFCAHAPGAVEPLASAIKYFRSEFEAGI 439


>gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
 gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
          Length = 636

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 170/422 (40%), Positives = 250/422 (59%), Gaps = 7/422 (1%)

Query: 4   DQDRIFTNL-YGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFS 61
           +Q R+   L   +  KSL D ++ G +  + K +L+   + +I EVK + LRGRGGAGF 
Sbjct: 134 NQQRLILGLNTKIDPKSLEDYLAVGGYQAMAKALLKMTPEQVIGEVKQAKLRGRGGAGFP 193

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G KW F      D+  Y+VVN DE +PG   DR +M   P T++EG +I ++AIGA   
Sbjct: 194 SGTKWEFARNAPGDQ-KYVVVNCDEGDPGAYMDRSLMEGNPFTVLEGLLIGAYAIGASEG 252

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+    ++L  A+ +    G LG N    G+D  + VH GAGA+ICGEET+LL+
Sbjct: 253 YIYVRQEYPLAVDNLTVAIKKAEEHGFLGKNILGSGFDFTVKVHRGAGAFICGEETSLLQ 312

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+P+ +PPFPA  GL+G PT +NNVE+ A +P I+ +GA ++S  G E+++GTK
Sbjct: 313 SLEGKPGEPKPRPPFPAIKGLWGKPTNINNVETWANIPVIINQGAEYFSSIGTESSKGTK 372

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G VN    VE  M +   ++I K  GG+  G     AV  GG S  C+P  +   
Sbjct: 373 IFSLVGKVNNTGLVEVPMGMPLRDIIFKIGGGVPNG-KKFKAVQTGGPSGGCIPE-EYLD 430

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L +MG+ +G+  +IVMD  T ++        F   ESCG+C PCREG   M++
Sbjct: 431 VKVDFDELMKMGAMMGSGGMIVMDEDTCLVDIARYFLEFLSDESCGKCVPCREGIRQMLK 490

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM  + +G  ++ +I+LL  ++   +G  +CALG  A  P+   +K FR   E  I +  
Sbjct: 491 VMTAITQGKGKEGDIELLENMAMATQGAALCALGKTAPNPVLSTLKYFRHEYEAHIKE-K 549

Query: 421 RC 422
           RC
Sbjct: 550 RC 551


>gi|320160662|ref|YP_004173886.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1]
 gi|319994515|dbj|BAJ63286.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1]
          Length = 538

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 154/394 (39%), Positives = 236/394 (59%), Gaps = 9/394 (2%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + D ++ G +  + K+L E     +I EV+ SGLRGRGGAG+ TG+KWS + K   ++  
Sbjct: 134 IEDYIATGGYAALIKVLTEFSPSEVIQEVQKSGLRGRGGAGYPTGLKWSTVAKAEGEQ-K 192

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           ++V NADE +PG   DR I+  +PH ++EG +IA++A+GA+  ++YVR E+    +  + 
Sbjct: 193 FVVCNADEGDPGAFMDRSILESDPHRVLEGMIIAAYAVGANQGYVYVRAEYPLAVKRFRT 252

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A+ +    G LG N   +   + VD  V  GAGA++CGEETALL+S+EG +G PRL+PP+
Sbjct: 253 AIRQAEKMGFLGQNICGTPFSFKVD--VRLGAGAFVCGEETALLQSVEGNRGMPRLRPPY 310

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT VNNVE+ A +P ILR G  W++  G E ++GTK+F+++G V     +E
Sbjct: 311 PAQSGLFGKPTLVNNVETYANIPAILRNGGEWFAQTGTEKSKGTKVFALTGKVKNTGLIE 370

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M IT  E++    GG+  G     AV  GG S  C+P  ++    +DY+ LK +GS +
Sbjct: 371 VPMGITLREIVYDIGGGVPDGR-KFKAVQTGGPSGGCIPE-ELLDTPVDYESLKALGSMM 428

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IV+D  +D+I        F   ESCG+C PCR GT  +  ++ +  +  A + ++
Sbjct: 429 GSGGMIVIDDRSDMIDVARYFMEFSMEESCGKCVPCRVGTVQLYNLLGKFQRREATEEDL 488

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             L E+   +   ++C LG AA  PI   +K FR
Sbjct: 489 KTLEELCDLVRSASLCGLGQAAPNPILSTLKYFR 522


>gi|77459829|ref|YP_349336.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens Pf0-1]
 gi|77383832|gb|ABA75345.1| NADH dehydrogenase subunit F [Pseudomonas fluorescens Pf0-1]
          Length = 451

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 161/381 (42%), Positives = 225/381 (59%), Gaps = 6/381 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D I+  VK +GL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M 
Sbjct: 55  QDAIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDESINIRYLLCNADEMEPNTWKDRMLME 114

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH LIEG +I++ A+  +  +I++RGE+    + L  AV+E  A+GLLG N    G+D
Sbjct: 115 QLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLNRAVEEAKAAGLLGKNILGSGFD 174

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP
Sbjct: 175 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVP 234

Query: 219 TILRRGASWYSGFGRENNR--GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  G  WY    R+ +   GTKL   SG V  P   E    +T  EL E + GG+R G
Sbjct: 235 AIIADGVDWYKSLARDGSEDMGTKLMGFSGKVKNPGLWELPFGVTGRELFEDYAGGMRDG 294

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
           +  L A  PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++  +  +
Sbjct: 295 F-KLKAWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNM 352

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  + +G  Q  +I+ L  +   +  G+T CA   
Sbjct: 353 EQFFARESCGFCTPCRDGLPWSVKLLMAIEQGRGQPGDIETLLGLVNFLGPGKTFCAHAP 412

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            A  P+   IK FRP  E  I
Sbjct: 413 GAVEPLGSAIKYFRPEFEAGI 433


>gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 604

 Score =  292 bits (748), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 158/424 (37%), Positives = 248/424 (58%), Gaps = 7/424 (1%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGAG 59
           L  Q RI     G +  +++   +  G +  + + + E     +I EV++SGLRGRGGAG
Sbjct: 101 LDSQKRILLKNSGKIDPENIESYLEEGGYQGLLNALKEMTPKDVIEEVQSSGLRGRGGAG 160

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW F  ++   +P Y++ NADE +PG   DR ++  +PH+L+EG  IA +AIGA+
Sbjct: 161 FPTFKKWEFT-RIEERQPKYVICNADEGDPGAFMDRSVLESDPHSLLEGMAIAGYAIGAN 219

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+R E+    + L+ A+++    G LG N    G+D DI +  GAGA++CGEETAL
Sbjct: 220 TGYIYIRAEYPLAVKRLEIAIEQAKEKGYLGKNIQDTGFDFDIYIREGAGAFVCGEETAL 279

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G P  KPPFPA  GL+  P+ +NNVE++A VP +  +GA  YS  G EN++G
Sbjct: 280 IASIEGKRGTPTFKPPFPAQKGLWTQPSCINNVETLANVPRVFLQGAEAYSELGTENSKG 339

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G V     +E  M I   +++ +  GGI        AV  GG S  C+PA + 
Sbjct: 340 TKVFALAGDVKRGGLIEVPMGIKIKDIVYEVGGGIVED-KGFKAVQIGGPSGGCIPA-KY 397

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
           +   +DY+ L E+G+ +G+  ++VMD  T ++        F   ESCG+CT CR GT  M
Sbjct: 398 QDVSVDYESLNELGAIMGSGGLLVMDEDTCMVDVAKFFLDFTAEESCGKCTFCRIGTHQM 457

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +++++ +G  +  +ID L ++   I   ++C LG  A  P+   +K FR   E  + +
Sbjct: 458 LDILDKITEGRGEMEDIDRLEDLGSKIIKGSLCGLGQTAPNPVLTTLKYFRDEYEAHVKE 517

Query: 419 YHRC 422
            +RC
Sbjct: 518 -NRC 520


>gi|71734155|ref|YP_275283.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554708|gb|AAZ33919.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323792|gb|EFW79876.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327931|gb|EFW83936.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 452

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 161/386 (41%), Positives = 225/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|289625430|ref|ZP_06458384.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649287|ref|ZP_06480630.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487552|ref|ZP_07005594.1| NADH-ubiquinone oxidoreductase chain F [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157936|gb|EFH99014.1| NADH-ubiquinone oxidoreductase chain F [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866834|gb|EGH01543.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 452

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 161/386 (41%), Positives = 225/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|115523732|ref|YP_780643.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53]
 gi|115517679|gb|ABJ05663.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53]
          Length = 428

 Score =  291 bits (746), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 167/397 (42%), Positives = 233/397 (58%), Gaps = 10/397 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK---VCS 74
           S +D    G +D     L +   D ++  V+ASGLRGRGGAGF TG KW  M K   V  
Sbjct: 18  SFADWQRLGGYDAFRTALNRHSPDALVAIVEASGLRGRGGAGFLTGTKWRLMRKAALVAG 77

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           + P YL VN DE EPG+ KDR +M   PH L+EG +IA++A+GA    I VR  +     
Sbjct: 78  EGPRYLCVNGDEMEPGSFKDRLLMEALPHQLLEGAMIAAYAVGASEVIILVRDAYRTAAA 137

Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+ E  ++GLLG N    G+ + + VH  AG YI GEETAL+ ++EG +  PR +P
Sbjct: 138 ALNRAIVEIESAGLLGRNILGSGFALKMRVHASAGRYIVGEETALIAAIEGDRPVPRARP 197

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P+PA  GL+G PTTVNNVE+++ +P I++ GA W+S     +  GTKL+ +SG V  P  
Sbjct: 198 PYPAQSGLWGRPTTVNNVETLSNLPLIVQHGAEWFSALSHTSEGGTKLYGVSGRVARPQL 257

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +E  M     ELIE  CGGIR G   L A  PGG +   L   ++    MD++ +K+ GS
Sbjct: 258 IEAPMGTPARELIEL-CGGIRDG-GKLRAFQPGGGATAFLEQAEL-DLPMDFEHMKKAGS 314

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT AVIV+D ++  + AI R + FY  ESCG CTPCR+G  W+ +++++L  G   + 
Sbjct: 315 SLGTGAVIVLDEASCPVAAIARHARFYARESCGLCTPCRDGLPWVAKLLDQLEAGQGTRE 374

Query: 374 EIDLLYEVS--KNIEGRTICALGDAAAWPIQGLIKNF 408
            IDLL+         GR+ C L   A  P++  ++ F
Sbjct: 375 TIDLLHMHVDLAGPSGRSFCDLNTGALTPVRSGLQRF 411


>gi|257485443|ref|ZP_05639484.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330987946|gb|EGH86049.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 452

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 161/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++     L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAARHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|294649464|ref|ZP_06726888.1| NADH-quinone oxidoreductase subunit F [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824634|gb|EFF83413.1| NADH-quinone oxidoreductase subunit F [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 442

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 156/381 (40%), Positives = 225/381 (59%), Gaps = 6/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +KA+ ++GRGGAGF  G+KWS M    +  P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYLICNADEMEPGTFKDRLLMEKLP 114

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 115 HQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGTGWNFEM 174

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 175 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 234

Query: 222 RRGASWYSGFG--RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY      +  + GTK++  SG V +P   E     T  E+IE H GG+R G   
Sbjct: 235 LRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMRDGL-T 293

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   L A  +    MD + + + GS LGT  ++V+D +  ++ A   L  F
Sbjct: 294 LKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 352

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +  +I  L E++K +  G+T CA    A 
Sbjct: 353 FARESCGFCTPCRDGLPWAVKALKALENGEGKMEDIQHLSELTKKLWIGKTFCAHAPGAM 412

Query: 399 WPIQGLIKNFRPLIEERIDQY 419
            P+ G +K FR   E +++ +
Sbjct: 413 EPLMGALKYFRHEFEAKVNTH 433


>gi|307822805|ref|ZP_07653036.1| NADH-quinone oxidoreductase, F subunit [Methylobacter tundripaludum
           SV96]
 gi|307736409|gb|EFO07255.1| NADH-quinone oxidoreductase, F subunit [Methylobacter tundripaludum
           SV96]
          Length = 423

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 172/414 (41%), Positives = 248/414 (59%), Gaps = 13/414 (3%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGM 64
           DR FT        +L+D  S G +  + K L + +   + + VK +GLRGRGGAGF TG+
Sbjct: 15  DRAFT--------TLADYESTGGYQGLRKALAELQPKDVQQWVKDAGLRGRGGAGFGTGL 66

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KWS +P     +  YLV NADE EPGT KDR ++  +PH LIEG +IA++AI A  A+I+
Sbjct: 67  KWSLVPLDDLSQTRYLVANADEMEPGTFKDRMLLEQDPHQLIEGMIIAAYAIQAQKAYIF 126

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           +RGE+   +  L+ A+ E  + G LG +     ++++I++H GAG YICGEETALL +LE
Sbjct: 127 LRGEYHVAKFRLEQALLEAKSKGYLGEHILNSAFNLEIVLHTGAGRYICGEETALLNALE 186

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+  PR KPPFP   GL+G PT VNNVE++  VP IL  G  WY G  R  ++GTKLF 
Sbjct: 187 GKRATPRAKPPFPLVSGLWGKPTVVNNVETLCNVPHILHYGVEWYQGLARGVDKGTKLFG 246

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
             G V +P   E  M     E+IE+H GG+R G+  L   +PGG+S   L    +   +M
Sbjct: 247 AGGRVKHPGLWELPMGTPIREIIEQHAGGMRDGY-KLRGFLPGGASTDFLLPEHL-DVVM 304

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D++ + + GS +GT  +IV+D  T  ++ +  L  F+  ESCG CTPCR+G  W + +++
Sbjct: 305 DFEAVAKAGSRMGTGVIIVLDDKTCPVRMVLNLEQFFAQESCGWCTPCRDGLPWTVTLLK 364

Query: 364 RLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++ G  +  ++D L  +++ +  G T CAL   A  P+Q  +K FR   E  I
Sbjct: 365 DIIAGKGRIEDLDTLAGLTRMLGPGNTFCALAPGAVEPLQSALKYFRADFERYI 418


>gi|148260120|ref|YP_001234247.1| NADH dehydrogenase (quinone) [Acidiphilium cryptum JF-5]
 gi|146401801|gb|ABQ30328.1| NADH dehydrogenase subunit F [Acidiphilium cryptum JF-5]
          Length = 434

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/424 (39%), Positives = 242/424 (57%), Gaps = 14/424 (3%)

Query: 6   DRIFTNLY--GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           DR  T+    G Q   ++     G +  + K      + ++ EVK + +RGRGGAGF  G
Sbjct: 5   DRPLTSYIQPGRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAGFPAG 64

Query: 64  MKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
            KW   P+   + R  YLV+NADE EPG+ KDR ++   PH +IEG +I +FA+ A  A+
Sbjct: 65  RKWEGAPRGADAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQAETAY 124

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           I+VRGE++   E L  AV E  A G LG++    G+ + I VH   G YICGE +AL  +
Sbjct: 125 IFVRGEYVLAMERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEASALFSA 184

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR-GTK 240
           LEGK+  PR +PP     GL+G PT VNNVE++  VP+I+ RGA W+ G  R     GTK
Sbjct: 185 LEGKRAVPRTRPPRSTTSGLWGKPTVVNNVETLCCVPSIIERGADWFLGLSRSATEGGTK 244

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ +SG VN P   E  +    +E+IE+H GG+R G++   AV+PGG+S   +    MR 
Sbjct: 245 LYGVSGRVNRPGLWELPVGTPLNEIIEEHAGGMREGYEA-RAVLPGGASTAFI----MRE 299

Query: 301 AI---MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                MD+D + ++GS LGTA ++V+D+    +  +  +  F+  ESCG CTPCR+G  W
Sbjct: 300 NFDVPMDFDSVGKIGSWLGTANILVLDQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPW 359

Query: 358 MMRVMERLVKGIAQKREIDLL-YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + R++  L  G  +  +I+LL + V     GRT C L   A  P++  +K FR   E  +
Sbjct: 360 VERILTALEAGEGEPDDIELLAHHVDFLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHV 419

Query: 417 DQYH 420
            + H
Sbjct: 420 SERH 423


>gi|28870533|ref|NP_793152.1| NADH dehydrogenase I, subunit F [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853781|gb|AAO56847.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 452

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 161/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH LIEG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLIEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-TLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|330503267|ref|YP_004380136.1| NADH-quinone oxidoreductase subunit F [Pseudomonas mendocina NK-01]
 gi|328917553|gb|AEB58384.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas mendocina
           NK-01]
          Length = 448

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 159/380 (41%), Positives = 221/380 (58%), Gaps = 6/380 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+  VK SGL+GRGGAGF TG+KW  MP   S    YL+ NADE EP T KDR +M   P
Sbjct: 59  IVQTVKESGLKGRGGAGFPTGVKWGLMPADESMNIRYLLCNADEMEPNTWKDRMLMEQLP 118

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H L+EG +I++ A+ A+  +I++RGE++    +L  A+DE  A+GLLG N    G+D ++
Sbjct: 119 HLLVEGMLISARALKAYRGYIFLRGEYVDAAANLNRAIDEAKAAGLLGKNIFGSGFDFEL 178

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP I+
Sbjct: 179 FVHTGAGRYICGEETALINSLEGRRANPRAKPPFPAAVGVWGKPTCVNNVETLCNVPAII 238

Query: 222 RRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            +G  WY G  R    + GTKL   SG V  P   E    IT  EL E + GG+R G+  
Sbjct: 239 GQGVDWYKGLARPGSEDHGTKLMGFSGKVKNPGLWELPFGITARELFEDYAGGMRDGY-K 297

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++  +  +  F
Sbjct: 298 LKCWQPGGAGTGFLLPEHLE-AQMYAGGIGKVGTRMGTGLALAVDDSINMVSLLRNMEEF 356

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +      +I  L  +   +  G+T CA    A 
Sbjct: 357 FARESCGWCTPCRDGLPWSVKILRALERKQGTAEDIQTLLGLVNFLGPGKTFCAHAPGAV 416

Query: 399 WPIQGLIKNFRPLIEERIDQ 418
            P+   IK FR   E  + Q
Sbjct: 417 EPLGSAIKYFREEFEAGVAQ 436


>gi|328953792|ref|YP_004371126.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328454116|gb|AEB09945.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 610

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/412 (40%), Positives = 249/412 (60%), Gaps = 11/412 (2%)

Query: 4   DQDR--IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGF 60
           DQD   +F NL  +   SL D  ++G ++ + K +    +   INEVK +G+RGRGGAGF
Sbjct: 188 DQDNMVLFANLDRIDPMSLDDYRAKGGYEGLKKAVTSMSQVDAINEVKTAGVRGRGGAGF 247

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KWSF  +     P Y+V NADE EPGT KDR IM  +PH ++EG  +A +A+GA  
Sbjct: 248 PAGLKWSFT-QPSPIIPKYIVCNADEGEPGTIKDRYIMEGDPHRVLEGMALAGYAVGASH 306

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177
            +IYVRGE+      LQ A+D+   +G LG N   S   + ++  V  G GAY+CGEETA
Sbjct: 307 GYIYVRGEYYLSMLRLQNAIDQAMQNGCLGKNIFGSDFSFTIE--VQSGGGAYVCGEETA 364

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G PR+KPPFP  VG++G P+ VNNVE+++ +P I+ +G  WY   G E+  
Sbjct: 365 LIESIEGKRGNPRVKPPFPGQVGVWGKPSIVNNVETLSSIPMIISKGGEWYKAKGTEDAT 424

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F + GHVN P  +E  + +T  ELI+++ GGIRGG     A   GG+S   +   Q
Sbjct: 425 GTKIFQVVGHVNQPGVIEADLGMTVRELIDRYGGGIRGG-KKFKACQTGGASFGFITEDQ 483

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    M+Y  +  +   LG+  ++VMD  T I+  +  +  F++HESCG C PCR GT  
Sbjct: 484 LDTP-MEYKAMGAIEGALGSGTMLVMDEDTCIVDVVKCILYFFQHESCGFCLPCRRGTRI 542

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +  ++ ++  G  ++ ++D + +V++ +     CAL  +  + I+  I+ +R
Sbjct: 543 LYDLICKIADGRGEEADLDKMIKVAQVMADSANCALAMSPIFFIKTTIERYR 594


>gi|326402927|ref|YP_004283008.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum
           AIU301]
 gi|325049788|dbj|BAJ80126.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum
           AIU301]
          Length = 434

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/424 (39%), Positives = 242/424 (57%), Gaps = 14/424 (3%)

Query: 6   DRIFTNLY--GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           DR  T+    G Q   ++     G +  + K      + ++ EVK + +RGRGGAGF  G
Sbjct: 5   DRPLTSYIQPGRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAGFPAG 64

Query: 64  MKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
            KW   P+   + R  YLV+NADE EPG+ KDR ++   PH +IEG +I +FA+ A  A+
Sbjct: 65  RKWEGAPRGADAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQAETAY 124

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           I+VRGE++   E L  AV E  A G LG++    G+ + I VH   G YICGE +AL  +
Sbjct: 125 IFVRGEYVLAMERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEASALFSA 184

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR-GTK 240
           LEGK+  PR +PP     GL+G PT VNNVE++  VP+I+ RGA W+ G  R     GTK
Sbjct: 185 LEGKRAVPRTRPPRSTTSGLWGKPTVVNNVETLCCVPSIIERGADWFLGLSRSATEGGTK 244

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ +SG VN P   E  +    +E+IE+H GG+R G++   AV+PGG+S   +    MR 
Sbjct: 245 LYGVSGRVNRPGLWELPVGTPLNEIIEEHAGGMREGYEA-RAVLPGGASTAFI----MRE 299

Query: 301 AI---MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                MD+D + ++GS LGTA ++V+D+    +  +  +  F+  ESCG CTPCR+G  W
Sbjct: 300 NFDVPMDFDSVGKIGSWLGTANILVLDQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPW 359

Query: 358 MMRVMERLVKGIAQKREIDLL-YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + R++  L  G  +  +I+LL + V     GRT C L   A  P++  +K FR   E  +
Sbjct: 360 VERILTALEAGEGEPDDIELLAHHVDFLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHV 419

Query: 417 DQYH 420
            + H
Sbjct: 420 SERH 423


>gi|330810467|ref|YP_004354929.1| NADH-quinone oxidoreductase subunit F [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|9719442|gb|AAF97802.1|AF281148_6 NADH dehydrogenase I subunit F [Pseudomonas fluorescens]
 gi|327378575|gb|AEA69925.1| NADH-quinone oxidoreductase subunit F [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 451

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/381 (42%), Positives = 223/381 (58%), Gaps = 6/381 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M 
Sbjct: 55  QDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESINIRYLLCNADEMEPNTWKDRMLME 114

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH LIEG +I++ A+  +  +I++RGE+    + L  AV+E  A+GLLG N    G+D
Sbjct: 115 QLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLNRAVEEAKAAGLLGKNILGSGFD 174

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP
Sbjct: 175 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVP 234

Query: 219 TILRRGASWYSGFGRENNR--GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  G  WY    R+ +   GTKL   SG V  P   E    +T  EL E + GG+R G
Sbjct: 235 AIIADGVDWYKSLARDGSEDMGTKLMGFSGKVKNPGLWELPFGVTGRELFEDYAGGMRDG 294

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
           +  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++  +  +
Sbjct: 295 Y-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNM 352

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L  G  Q  +I+ L  +   +  G+T CA   
Sbjct: 353 EEFFSRESCGFCTPCRDGLPWSVKLLRALENGEGQAGDIETLLGLVGFLGPGKTFCAHAP 412

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            A  P+   IK FRP  E  I
Sbjct: 413 GAVEPLGSAIKYFRPEFEAGI 433


>gi|331017275|gb|EGH97331.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 452

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQAHELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-TLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|254167372|ref|ZP_04874224.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|197623635|gb|EDY36198.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Aciduliprofundum boonei T469]
          Length = 404

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/394 (39%), Positives = 240/394 (60%), Gaps = 11/394 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           ++ D +++G +  + K LE G+D II EV+ SGL GRGGA F TG+K  F+ K  S  P 
Sbjct: 9   NVEDYLAQGGFKALRKALEYGQDEIIREVEISGLLGRGGAAFPTGLKMKFVRKEKST-PK 67

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE EPGT KDR +M   P+ ++EG +I+ +AI A   F Y+R E+    + ++ 
Sbjct: 68  YIVANADEGEPGTFKDRVLMERNPYQILEGMIISGYAIDAKKGFFYIRYEYKEIAKDIKR 127

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            ++E    G+LG N    K  +D++++V  GAGAY+CGEETAL+ES+EGK+G PR+KPP+
Sbjct: 128 KIEELRRLGILGPNIYGPKFSFDIELVV--GAGAYVCGEETALMESIEGKRGYPRIKPPY 185

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE++A +P ++  G + YS  G+E   G KLFS+SG V  P   E
Sbjct: 186 PAQYGLWGKPTLINNVETLANIPIVMSMGGANYSKLGKEGCTGPKLFSVSGFVKNPGVYE 245

Query: 256 ESM-SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
            ++   T  E+IE   GG  G    +  ++ GG +   +   +     + +   KE G  
Sbjct: 246 ANLGDKTIGEMIE-LAGGAEG---KIKGIMLGGGAAGFILNEEHLDLPLCFKDAKERGLF 301

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT  +IV + S  +   +  +S F++HESCGQC PCR GT  M  ++E++V+G  +K +
Sbjct: 302 LGTGNIIVFNESVGLWDVLLNISKFFEHESCGQCFPCRYGTKRMREIIEKIVRGDGRKED 361

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           I+ L   ++ ++  ++C LG +A    +  +KNF
Sbjct: 362 IEKLNATARAMKIASLCPLGASAMLAYESAMKNF 395


>gi|195952596|ref|YP_002120886.1| NADH dehydrogenase (quinone) [Hydrogenobaculum sp. Y04AAS1]
 gi|195932208|gb|ACG56908.1| NADH dehydrogenase (quinone) [Hydrogenobaculum sp. Y04AAS1]
          Length = 425

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/379 (43%), Positives = 233/379 (61%), Gaps = 13/379 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           ++K L    + I+ EV  S LRGRGGAGF TG KW F   + +  P YLV NADESEPGT
Sbjct: 43  LEKALSMKPEDIVEEVDNSNLRGRGGAGFPTGRKWKFC--LQNKAPRYLVCNADESEPGT 100

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR I+  +PH L+EG +I+++A+G + A+IY+RGE+      L+ A++E    G LG 
Sbjct: 101 FKDRLIIERDPHLLLEGMIISAYALGVNRAYIYIRGEYPAGYYILRNAIEEAKKEGFLGK 160

Query: 152 N-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
           N    G+D++I+V  GAGAYICGEETALL S+EGK+G PRLKPPFP  VGL+G PT VNN
Sbjct: 161 NILNSGFDLEILVSRGAGAYICGEETALLNSIEGKRGHPRLKPPFPVQVGLWGRPTVVNN 220

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270
           VE+++ +P I+  G+  Y   G  +  G KLF +SG V  P   E  M+ T  E+I K+ 
Sbjct: 221 VETLSNIPIIINLGSEGYKEIGPMDYPGPKLFPVSGKVKKPGVYELPMNTTLREVIFKYA 280

Query: 271 GG-IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
           GG IR     + AV  G  ++ CL   ++    MDY    + G G GT  VIV+    DI
Sbjct: 281 GGTIRN--VPIKAVFSG--ALDCLSVSELDTP-MDYS---QFGFG-GTGTVIVLTEEDDI 331

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           + A ++++ FY+HE+CG CTPCR G      +++++ K  A  +  + L  V+K I+  +
Sbjct: 332 VNACYKIAEFYEHETCGFCTPCRIGCHEQAYLLDKIEKDEATPKTWEGLRFVTKYIQPTS 391

Query: 390 ICALGDAAAWPIQGLIKNF 408
           +C LG  A+  I+  ++ F
Sbjct: 392 VCGLGAVASRLIKQAMEKF 410


>gi|226953548|ref|ZP_03824012.1| NADH dehydrogenase I subunit F [Acinetobacter sp. ATCC 27244]
 gi|226835726|gb|EEH68109.1| NADH dehydrogenase I subunit F [Acinetobacter sp. ATCC 27244]
          Length = 442

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/381 (40%), Positives = 224/381 (58%), Gaps = 6/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +KA+ ++GRGGAGF  G+KWS M    +  P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYLICNADEMEPGTFKDRLLMEKLP 114

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 115 HQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGTGWNFEM 174

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 175 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 234

Query: 222 RRGASWYSGFG--RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY      +  + GTK++  SG V +P   E     T  E+IE H GG+R G   
Sbjct: 235 LRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMRDGL-T 293

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   L A  +    MD + + + GS LGT  ++V+D +  ++ A   L  F
Sbjct: 294 LKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 352

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +  +I  L E++K +  G+T CA    A 
Sbjct: 353 FARESCGFCTPCRDGLPWAVKALKALENGEGKMEDIQHLSELTKKLWIGKTFCAHAPGAM 412

Query: 399 WPIQGLIKNFRPLIEERIDQY 419
            P+ G +K FR   E ++  +
Sbjct: 413 EPLMGALKYFRHEFEAKVSTH 433


>gi|213970031|ref|ZP_03398163.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301381386|ref|ZP_07229804.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062157|ref|ZP_07253698.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato
           K40]
 gi|302130467|ref|ZP_07256457.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213925135|gb|EEB58698.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|330875769|gb|EGH09918.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 452

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-TLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|322421845|ref|YP_004201068.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320128232|gb|ADW15792.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 593

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/378 (42%), Positives = 233/378 (61%), Gaps = 10/378 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMR 99
           +++EVK SGLRGRGG GF TGMKWSF    C+  P    YL+ NADE +PG   DR I+ 
Sbjct: 153 VVDEVKKSGLRGRGGGGFPTGMKWSF----CAASPGNHKYLICNADEGDPGAFMDRSILE 208

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYD 158
            +P+ +IEG +IA++AIG    ++YVR E+    + LQ A+D CY  G LG N +  G+D
Sbjct: 209 GDPYCVIEGMMIAAYAIGCDAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFD 268

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+ +  GAGA++CGEETAL+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V 
Sbjct: 269 FDMRIKKGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVR 328

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I+ +GA WY+  G E  +GTK+F+++G V +   VE    ++  ++I + CGGI     
Sbjct: 329 HIINKGADWYASLGTETTKGTKIFAVTGKVKHTGLVEVPAGMSVRDVIYQVCGGIANN-R 387

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S  C+P+ ++    +DYD L + G+ +G+  ++VMD +T ++        
Sbjct: 388 KFKAVQAGGPSGGCIPS-EVLDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLT 446

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F K ESCG+C PCR G   M+ ++ER+ +G  +  +ID L E+   I+  ++C LG  A 
Sbjct: 447 FTKMESCGKCVPCRIGLKAMLDILERITEGRGEMADIDTLLEMGATIKKASLCGLGQTAP 506

Query: 399 WPIQGLIKNFRPLIEERI 416
            PI   +K FR   E  I
Sbjct: 507 NPILSTVKYFRHEYEAHI 524


>gi|331010723|gb|EGH90779.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 452

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++     L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAARHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGWWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
 gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
          Length = 602

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/394 (40%), Positives = 237/394 (60%), Gaps = 7/394 (1%)

Query: 19  SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ + ++R  +  + K L E   + +I  VK SGLRGRGGAGF TG+KW F  K   D  
Sbjct: 130 SIDEYIARDGYFALHKALKEMTPEQVIEVVKESGLRGRGGAGFPTGLKWEFARKSPGDE- 188

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ NADE +PG   DR I+  +PH++IE   IA++AIGA   F+YVR E+    E L 
Sbjct: 189 KYMICNADEGDPGAFMDRSILEGDPHSIIEAMTIAAYAIGATKGFVYVRAEYPIAIERLT 248

Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A+++    G LG N  LG D   DI +  GAGA++CGEETAL+ S+EGK+GQPR+KPPF
Sbjct: 249 VALNQAREYGFLGENI-LGTDFSFDIEIRIGAGAFVCGEETALMHSIEGKRGQPRVKPPF 307

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G P+ +NNVE++A VP I+  G  W+  +G E + GTK+F+++G V     VE
Sbjct: 308 PAQKGLWGKPSNINNVETLACVPPIIYHGPQWFRQWGTEKSPGTKVFALAGKVKNTGLVE 367

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M IT  ELI +  GG   G   + AV  GG S   +P       + DY+ L+++G+ +
Sbjct: 368 VPMGITLRELIYEIGGGSPTG-KKIKAVQTGGPSGGVIPEEYFDTPV-DYESLQQLGAIV 425

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IV+D    ++        F   ESCG+CTPCREGT  M  +++++ KG   + +I
Sbjct: 426 GSGGMIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTKKMYEILDKITKGEGTEEDI 485

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++L  ++  I+  ++C LG  A  P+   ++ ++
Sbjct: 486 EILENLANVIKDSSLCGLGQTAPNPVLSTLRYYK 519


>gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 639

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/394 (39%), Positives = 236/394 (59%), Gaps = 5/394 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + + +  G ++ +  +L EK  + +I  +  SGLRGRGGAGF TG+KW F     +D+
Sbjct: 171 EKIDEYIGTGGYEALGIVLTEKKPEDVIQILLDSGLRGRGGAGFPTGLKWKFAAGNDADQ 230

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+  NADE +PG   DR I+  +PH ++E   IA +AIGA   +IYVR E+    + L
Sbjct: 231 -KYVCCNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGASQGYIYVRAEYPIAVQRL 289

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+++    GLLG N    G+D DI +  GAGA++CGEETAL+ S+EG +G+PR +PPF
Sbjct: 290 EIAIEQAREYGLLGKNIFDSGFDFDIELRLGAGAFVCGEETALMTSIEGNRGEPRPRPPF 349

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+  PT +NNVE+ A +P I+  G  W++  G E ++GTK+F++ G ++    VE
Sbjct: 350 PALKGLFQKPTILNNVETYANIPQIIVNGPEWFASMGTEKSKGTKVFALGGKIHNTGLVE 409

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  E++E+  GG+  G     A   GG S  C+PA  +   I DYD L  +GS +
Sbjct: 410 IPMGTTLREIVEEIGGGVPNG-KKFKAAQTGGPSGGCIPAEHLDIPI-DYDNLLSIGSMM 467

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD  T ++        F   ESCG+CTPCR GT  M+ ++E++ KG A   ++
Sbjct: 468 GSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCTPCRIGTRRMLEILEKITKGQATMEDL 527

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           D L E+  +++  ++CALG  A  P+   ++ FR
Sbjct: 528 DKLEELCYHLQSNSLCALGQTAPNPVLSTLRYFR 561


>gi|330900630|gb|EGH32049.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 423

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 21  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 80

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 81  RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 140

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 141 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 200

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 201 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQAPELFEDYAG 260

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 261 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 318

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I+ L  +   +  G+T 
Sbjct: 319 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQPGDIETLLGLVNFLGPGKTF 378

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 379 CAHAPGAVEPLGSAIKYFRSEFEAGI 404


>gi|253698812|ref|YP_003020001.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
 gi|251773662|gb|ACT16243.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
          Length = 421

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/370 (42%), Positives = 226/370 (61%), Gaps = 8/370 (2%)

Query: 50  SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           SGLRGRGGAGF TG KWSF+P+     P +++ N DE EPGT KDR ++ H P++LIEG 
Sbjct: 48  SGLRGRGGAGFPTGKKWSFVPRDLPG-PRWIICNCDEMEPGTYKDRVLLEHNPYSLIEGM 106

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167
            +A +A+G    FI++R  + +  E+L  A+ E    G LG    LG  + +DI +H  A
Sbjct: 107 TLACYALGVRHGFIFIRKGYEQAAENLARAIAEAKKEGFLGERI-LGSEHSIDIDLHLSA 165

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           G YICGEETAL+ +LEGK+  PR KPPFPA  GL+G PT VNNVE++A +P I+ RGA+W
Sbjct: 166 GRYICGEETALINALEGKRPNPRQKPPFPAVKGLWGGPTVVNNVETLANIPGIVARGAAW 225

Query: 228 YSGFG-RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
           + G        G+KLF +SG V     VE  + I   ++I+  CGG+R G     A IPG
Sbjct: 226 FKGLAINPEGAGSKLFCVSGSVKDRACVELPIGIPLADIIDGPCGGMRLG-KKFKACIPG 284

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G+S   L A  ++   MDYD + + GS LG+  +IV D S  +++A   L  F+  ESCG
Sbjct: 285 GASTQFLTAEHLK-VPMDYDPVAKAGSRLGSGGIIVFDESHCLVEATLNLITFFARESCG 343

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
            CTPCREG  ++  ++ R+  G  ++ +I +L E  + +   + CAL   A  P++GL++
Sbjct: 344 WCTPCREGLPYVKEILTRIETGYGKEDDIAILREHIRYLN-YSFCALAPGAMAPLEGLLR 402

Query: 407 NFRPLIEERI 416
           +F   + E I
Sbjct: 403 HFEDEVREHI 412


>gi|330981367|gb|EGH79470.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 452

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|302185027|ref|ZP_07261700.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae
           642]
          Length = 452

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|119595059|gb|EAW74653.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform
           CRA_b [Homo sapiens]
          Length = 230

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/209 (65%), Positives = 166/209 (79%), Gaps = 1/209 (0%)

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           M K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A+IY+RGE
Sbjct: 1   MNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGE 60

Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           F  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+ES+EGK+G
Sbjct: 61  FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH
Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGG 276
           VN+PCTVEE MS+   ELIEKH G  R G
Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGTDRPG 209


>gi|166362850|ref|YP_001655123.1| bidirectional hydrogenase diaphorase subunit [Microcystis
           aeruginosa NIES-843]
 gi|166085223|dbj|BAF99930.1| bidirectional hydrogenase diaphorase subunit [Microcystis
           aeruginosa NIES-843]
          Length = 535

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/394 (37%), Positives = 242/394 (61%), Gaps = 10/394 (2%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + + ++ G + ++ K L E     ++ E+  SGLRGRGGAG+ TG+KW+ + K    +  
Sbjct: 132 IEEYIAVGGYQSLYKALYEMTPAQVVEEITQSGLRGRGGAGYPTGLKWATVAKQ-PGKQK 190

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ NADE +PG   DR ++  +PH ++EG  IA++A+GA   +IYVR E+    + LQ 
Sbjct: 191 YVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGADHGYIYVRAEYPLAIDRLQK 250

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A+++    GL+GS    S   + VDI +  GAGA++CGEETAL+ S+EG +G PR +PP+
Sbjct: 251 AINQAKKFGLMGSQVFESTFDFKVDIRI--GAGAFVCGEETALIHSIEGGRGTPRTRPPY 308

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL GCPT +NNVES A +  I+R GA+WY+  G  +++GTK+F+++G +     +E
Sbjct: 309 PAQSGLDGCPTLINNVESYANIAAIIREGAAWYANIGTASSKGTKIFALTGKIRNNGLIE 368

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M IT  E++E+  GG+  G   + AV  GG S  C+PA  +   + DY+ L ++GS +
Sbjct: 369 VPMGITLREIVEEMGGGVPDG--QVKAVQTGGPSGGCIPANLLDTPV-DYESLAKLGSMM 425

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  ++VMD +T +++       F + ESCG+C PCR GT  M  ++ +++   A   ++
Sbjct: 426 GSGGMVVMDDTTSMVEVAKFYMEFCREESCGKCIPCRTGTVQMFELLAKIIARKADIHDL 485

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + L  + + ++  ++C LG +A  PI   +K F+
Sbjct: 486 ENLEHLCQMVKETSLCGLGQSAPNPILSTLKYFK 519


>gi|66046430|ref|YP_236271.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257137|gb|AAY38233.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972911|gb|EGH72977.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 452

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/386 (41%), Positives = 224/386 (58%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|237809384|ref|YP_002893824.1| NADH-quinone oxidoreductase, F subunit [Tolumonas auensis DSM 9187]
 gi|237501645|gb|ACQ94238.1| NADH-quinone oxidoreductase, F subunit [Tolumonas auensis DSM 9187]
          Length = 444

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 152/362 (41%), Positives = 217/362 (59%), Gaps = 6/362 (1%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWS +P        Y++ NADE EPGT KDR +M   PH LIEG +I ++A+ A+
Sbjct: 63  FPTGVKWSLVPMDPKFDKKYILCNADEMEPGTYKDRLLMEQLPHQLIEGMLIGAYALQAY 122

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +I++RGE+I   + L+ A++E   +G LG N    G++ ++ VH GAG YICGEETAL
Sbjct: 123 RGYIFLRGEYIEAAQRLRQAIEEATKAGFLGKNILGTGFNFELFVHTGAGRYICGEETAL 182

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENN 236
           + SLEG++  PR KPPFPA  G +G PT VNNVE++  +P+I++ G  WY G   G+ N+
Sbjct: 183 INSLEGRRANPRAKPPFPALAGAWGKPTCVNNVETLNNIPSIMQNGVDWYKGISAGKSND 242

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTKL   SG VN P   E     T  E++E + GG+R G   L A  PGG+    L   
Sbjct: 243 TGTKLMGFSGRVNNPGVWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFL-TE 300

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           Q     MD+D + + GS LGTA  + +D   +++     L  F+  ESCG CTPCREG  
Sbjct: 301 QHLDLPMDFDSIGKAGSRLGTALAMAVDNEINMVSLTLNLEKFFSRESCGWCTPCREGLP 360

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           W +++++ L KG  Q+ +I+ L ++ +++  G+T CA    A  P+Q  IK FR   E  
Sbjct: 361 WSVKILQALEKGEGQRGDIETLEKLCRDLGPGKTFCAHAPGAVEPLQSAIKYFRAEFEAG 420

Query: 416 ID 417
           I+
Sbjct: 421 IN 422


>gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment
           culture clone BF]
          Length = 595

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 167/411 (40%), Positives = 249/411 (60%), Gaps = 6/411 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q RI   N   +    + + ++R  +  + K+L E   + ++N VK SGLRGRGG 
Sbjct: 110 FFQNQLRIALRNCGHINPDDVEEYIARDGYRALGKVLAEYKPEDVVNVVKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K  SD   Y++ NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGLKWELTRKSTSDM-KYVICNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              F+YVR E+    E L  A+ +    GLLG N  + G+  DI +  GAGA++CGEETA
Sbjct: 229 QQGFVYVRAEYAIAVERLTTAIKQAREKGLLGKNLFESGFSFDIDLRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE++A +P I+  GA W++GFG E ++
Sbjct: 289 LITSIEGNRGEPRPRPPFPAQQGLWGKPTLINNVETLANIPMIILNGADWFAGFGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+I+G +     +E  M IT  ++I    GGI  G +   A   GG S  C+PA +
Sbjct: 349 GTKVFAIAGKIGNTGLIEVPMGITLRDIIYNIGGGIPDGRE-FKAAQTGGPSGGCIPA-K 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L E+GS +G+  +I+MD ST ++        F   ESCG+CTPCR GT  
Sbjct: 407 LIDTPIDYDSLLEIGSMMGSGGLIIMDDSTCMVDIAKFYLEFTCDESCGKCTPCRVGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           M+ ++ER+ +G  ++ +IDLL E+   I+  ++C LG +A  P+   ++ F
Sbjct: 467 MLEILERITEGKGREEDIDLLQELGHGIKETSLCGLGQSAPNPVLSTLRYF 517


>gi|330830049|ref|YP_004393001.1| NADH dehydrogenase I subunit F [Aeromonas veronii B565]
 gi|328805185|gb|AEB50384.1| NADH dehydrogenase I, F subunit [Aeromonas veronii B565]
          Length = 461

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 161/380 (42%), Positives = 225/380 (59%), Gaps = 6/380 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I++ VK +GL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M  
Sbjct: 62  DEIVSTVKDAGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRLLMEQ 121

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH LIEG +I++ A+ A+  +I++RGE++     L+ AV+E  A+GLLG N    G+D 
Sbjct: 122 LPHLLIEGMIISARALKAYRGYIFLRGEYVDAAIHLRRAVEEAKAAGLLGKNILGSGFDF 181

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 182 ELFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPAVSGVWGKPTCVNNVETLCNVPA 241

Query: 220 ILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           I+  G +WY G       + GTKL   SG VN P   E    IT  EL E + GG++ G+
Sbjct: 242 IIGNGVAWYHGLALPGSEDHGTKLMGFSGKVNNPGVWELPFGITARELFENYAGGMKSGY 301

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L A  PGG+    L    +  A M   G+ ++G+ +GT   + +D S  ++  +  + 
Sbjct: 302 -RLKAWQPGGAGTGFLLPEHLD-AQMYTAGIGKVGTRMGTGLAMAVDDSISMVSLLRNME 359

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L +G  Q  ++  L ++   +  G+T CA    
Sbjct: 360 EFFARESCGWCTPCRDGLPWSVKLLRALERGEGQSGDLATLEQLCGFLGPGKTFCAHAPG 419

Query: 397 AAWPIQGLIKNFRPLIEERI 416
           A  P+   IK FR   E  I
Sbjct: 420 AVEPLASAIKYFRSEFEAGI 439


>gi|253702590|ref|YP_003023779.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
 gi|251777440|gb|ACT20021.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
          Length = 593

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 161/378 (42%), Positives = 232/378 (61%), Gaps = 10/378 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMR 99
           +I+EVK SGLRGRGG GF TGMKWSF    C+  P    YL+ NADE +PG   DR I+ 
Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSF----CAASPGNHKYLICNADEGDPGAFMDRSILE 208

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYD 158
            +P+ +IEG +IA++AIG    ++YVR E+    + LQ A+D CY  G LG N +  G+D
Sbjct: 209 GDPYCIIEGMMIAAYAIGCDAGYVYVRAEYPLAIDRLQKALDVCYEKGYLGKNIQGWGFD 268

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+ +  GAGA++CGEETAL+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V 
Sbjct: 269 FDMRIKKGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVR 328

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I+  G+ WY+  G +  +GTK+F+++G V +   VE    ++  ++I K CGGI     
Sbjct: 329 HIINNGSEWYAALGTDTTKGTKIFAVTGKVKHTGLVEVPAGMSVRDVIYKVCGGIANN-R 387

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S  C+PA ++    +DYD L + G+ +G+  ++VMD +T ++        
Sbjct: 388 KFKAVQAGGPSGGCIPA-EVLDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLS 446

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F K ESCG+C PCR G   M+ ++ER+ +G  +  +ID L E+   I+  ++C LG  A 
Sbjct: 447 FTKMESCGKCVPCRIGLKAMLDILERITEGRGEMADIDTLLEMGATIKKASLCGLGQTAP 506

Query: 399 WPIQGLIKNFRPLIEERI 416
            PI   +K FR   E  I
Sbjct: 507 NPILSTVKYFRNEYEAHI 524


>gi|169831497|ref|YP_001717479.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638341|gb|ACA59847.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 572

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 236/393 (60%), Gaps = 5/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ + + R  +  + ++L    R+ ++ E+K SGLRGRGGAGF TG+KW F  +   D P
Sbjct: 155 SIEEYIGRDGYTALARVLNGMTREQVVEEIKKSGLRGRGGAGFPTGLKWQFTLQA-EDEP 213

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V N DE +PG   DR ++  +PH+++EG  I  +A+GA   + Y+R E+    ++  
Sbjct: 214 KYVVCNGDEGDPGAFMDRSVLEGDPHSVLEGMAIGGYAVGASKGYAYIRAEYPLAIKNFG 273

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           AA+      GLLG++    G+  D+ +  GAGA++CGEETALL S+ GK+G+PR +PPFP
Sbjct: 274 AAIKSAREMGLLGTDILDSGFSFDVEIRVGAGAFVCGEETALLHSIAGKRGEPRPRPPFP 333

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  PT +NNVE+ A +  I+ RG  WY+G G E ++GTK+F+++G +     VE 
Sbjct: 334 AQCGLFDKPTVINNVETWANIAPIILRGGDWYAGIGTEKSKGTKVFALAGKIVNTGLVEV 393

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            +  T  E++    GG++ G  +L A+  GG S   +PA  +   I DY+ L  + S +G
Sbjct: 394 PLGTTLREVVYDIGGGMKNG-KSLKAIQSGGPSGGAIPAEYIDTPI-DYEALAALDSIMG 451

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  +IV+D  + ++        F + ESCG+CTPCR GT  M+ ++ RL +G A K +++
Sbjct: 452 SGGMIVLDEDSCMVDVARFFMDFVQDESCGKCTPCRIGTRRMLEILTRLTQGRATKEDVE 511

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           LL E++  ++   +C LG  A  P+    +++R
Sbjct: 512 LLIELANVVKKTALCGLGQTAGNPVLSTTRHYR 544


>gi|222053575|ref|YP_002535937.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562864|gb|ACM18836.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 593

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 162/381 (42%), Positives = 234/381 (61%), Gaps = 5/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+EVK SGLRGRGG GF TGMKWSF      D+  YL+ NADE +PG   DR ++  +P
Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSFCAASPGDK-KYLICNADEGDPGAFMDRSVLEGDP 211

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDI 161
             +IEG ++A++AIG +  ++YVR E+    + LQ A+D CY  G LG N +  G+D D+
Sbjct: 212 FCIIEGMMVAAYAIGCYYGYVYVRAEYPLAIQRLQHAIDICYEKGWLGKNIQGWGFDFDM 271

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETAL+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V  I+
Sbjct: 272 RIKMGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHII 331

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +GA WY+  G +  +GTK+F+++G V +   VE    ++  ++I   CGGI        
Sbjct: 332 NKGADWYASLGTDTTKGTKIFAVTGKVKHTGLVEVPAGMSVRQVIYDVCGGIANN-RKFK 390

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  C+PA ++    +DYD L + G+ +G+  ++VMD +T ++        F +
Sbjct: 391 AVQAGGPSGGCIPA-EVLDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLSFTR 449

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR G   M+ V+ER+ +G  Q  +ID L E+   I+  ++C LG  A  PI
Sbjct: 450 MESCGKCVPCRIGLKAMLDVLERITEGRGQASDIDTLLEMGATIKKASLCGLGQTAPNPI 509

Query: 402 QGLIKNFRPLIEERIDQYHRC 422
              IK FR   E  I+   RC
Sbjct: 510 LSTIKYFRHEYEAHIND-KRC 529


>gi|145298719|ref|YP_001141560.1| NADH dehydrogenase I subunit F [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851491|gb|ABO89812.1| NADH dehydrogenase I, F subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 461

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 165/402 (41%), Positives = 234/402 (58%), Gaps = 7/402 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +D   K L +   D I+  VK +GL+GRGGAGF TG+KW  MPK  S    
Sbjct: 40  LDEYQSKQGYDAARKALGQMSPDEIVGTVKDAGLKGRGGAGFPTGVKWGLMPKDESMNIR 99

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EP T KDR +M   PH LIEG +I++ A+ A+  +I++RGE++     L+ 
Sbjct: 100 YLLCNADEMEPNTWKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAIHLRR 159

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 160 AVIEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKPPFPA 219

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVE 255
             G++G PT VNNVE++  VP I+  G +WY G       + GTKL   SG VN P   E
Sbjct: 220 VSGVWGKPTCVNNVETLCNVPAIIGNGVAWYQGLALPGSEDHGTKLMGFSGKVNNPGVWE 279

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               IT  EL E + GG++ G+  L A  PGG+    L    +  A M   G+ ++G+ +
Sbjct: 280 LPFGITARELFEHYAGGMKPGY-RLKAWQPGGAGTGFLLPEHLD-AQMYTAGIGKVGTRM 337

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q+ ++
Sbjct: 338 GTGLAMAVDDSVNMVGLLRNMEEFFARESCGWCTPCRDGLPWNVKLLRALERGEGQQGDL 397

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             L ++   +  G+T CA    A  P+   +K FR   E  I
Sbjct: 398 ATLEQLCNFLGPGKTFCAHAPGAVEPLASALKYFRSEFEAGI 439


>gi|148266249|ref|YP_001232955.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
 gi|146399749|gb|ABQ28382.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
          Length = 593

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 160/381 (41%), Positives = 235/381 (61%), Gaps = 5/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+EVK SGLRGRGG GF TGMKWSF      D+  YL+ NADE +PG   DR ++  +P
Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSFCAASPGDK-KYLICNADEGDPGAFMDRSVLEGDP 211

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDI 161
             +IEG +I+++AIG +  ++YVR E+    + LQ A+D CY  G LG N +  G+D D+
Sbjct: 212 FCIIEGMMISAYAIGCYYGYVYVRAEYPLAIQRLQHAIDICYEKGWLGKNIQGWGFDFDM 271

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETAL+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V  I+
Sbjct: 272 RIKMGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHII 331

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +GA WY+  G +  +GTK+F+++G V +   VE +  ++  ++I   CGGI        
Sbjct: 332 NKGADWYASLGTDTTKGTKIFAVTGKVKHTGLVEVAAGMSVRQVIYDVCGGIANN-RKFK 390

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  C+PA ++    +DYD L + G+ +G+  ++VMD +T ++        F +
Sbjct: 391 AVQAGGPSGGCIPA-EVLDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTR 449

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR G   M+ ++ER+ +G  Q  +ID L E+   I+  ++C LG  A  PI
Sbjct: 450 MESCGKCVPCRIGLKAMLDILERITEGRGQASDIDTLLEMGATIKKASLCGLGQTAPNPI 509

Query: 402 QGLIKNFRPLIEERIDQYHRC 422
              +K FR   E  I+   RC
Sbjct: 510 LSTVKYFRHEYEAHIND-KRC 529


>gi|225849102|ref|YP_002729266.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit
           f) (ndh-1 subunit f) (Nuo6) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643363|gb|ACN98413.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit
           f) (ndh-1 subunit f) (Nuo6) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 429

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 171/393 (43%), Positives = 236/393 (60%), Gaps = 16/393 (4%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + +  + G +  + K L K   + I+  V+ S LRGRGGAGF TG KW F   + + +P 
Sbjct: 31  IEEYETTGGYSALKKALTKLTPEDIVIMVEESTLRGRGGAGFPTGRKWRFA--LANPKPR 88

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADESEPGT KDR I+  +PH LIEG +I+++A+GA   FIY+RGE+      L+ 
Sbjct: 89  YLICNADESEPGTFKDRIIIERDPHLLIEGMIISAYALGAELGFIYIRGEYPAGYMILED 148

Query: 139 AVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A++E    G LG N  LG D   DI+V+ GAGAYICGEETAL+ESLEGK+G PRL+PP+P
Sbjct: 149 AIEEARKKGYLGKNI-LGTDFSFDILVYRGAGAYICGEETALIESLEGKRGHPRLRPPYP 207

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           AN GL+G PT VNNVE+++ +P I+    S+Y   G     G KLF ISG V  P   E 
Sbjct: 208 ANEGLFGRPTVVNNVETLSNIPIIVTY-ESYYMSIGPAGYYGPKLFPISGKVKNPGVYES 266

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +M IT  ELI+   GG++ G     AV  G   V    + +     MDY      G G G
Sbjct: 267 TMDITLRELID-MAGGMKDG-KKFKAVFAGALGV---YSERDLDTPMDYS---PKGFG-G 317

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T   IV+     II A+  +  F+ HESCG+CTPCR GT  ++ ++++  +G A +++I 
Sbjct: 318 TGTTIVLAEDDCIIDALIVIGEFFHHESCGKCTPCRVGTYELLNILKKFQEGTATEKDIK 377

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  + +NI   +IC LG +A   ++  +K FR
Sbjct: 378 YLEHLCENIPVGSICGLGYSAPNAVRDALKKFR 410


>gi|90425542|ref|YP_533912.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
 gi|90107556|gb|ABD89593.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
          Length = 428

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 168/390 (43%), Positives = 232/390 (59%), Gaps = 12/390 (3%)

Query: 27  GHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---DRPHYLVV 82
           G +D +   L++   D ++  V+ SGLRGRGGAGF TG KW  M K      D P YL V
Sbjct: 26  GGYDALRGALQRHSPDALVTIVEDSGLRGRGGAGFLTGTKWRLMRKAAEAAGDGPRYLCV 85

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           N DE EPG+ KDR +M   PH LIEG ++A++AIGA    I VR  +     +L  A+ E
Sbjct: 86  NGDEMEPGSFKDRLLMEALPHQLIEGAMLAAYAIGATEVIILVRDAYRAAAVALTRAITE 145

Query: 143 CYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
             ++GLLG N    G+ + + +H  AG YI GEETAL+ ++EG++  PR +PP+PA  GL
Sbjct: 146 AESAGLLGRNILGSGFGLKMRLHTSAGRYIVGEETALIAAIEGERPVPRHRPPYPAQSGL 205

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
           +G PTTVNNVE+++ VP I++ GA W+ G  R    GTKL+ ISG V  P  +E  M   
Sbjct: 206 WGRPTTVNNVETLSAVPHIVQNGAEWFQGLSRTAEGGTKLYGISGRVARPQLIEAPMGTP 265

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
             ELIE   GGIR G   LLA  PGG +   L   ++    MD+  +K+ GS LGT AVI
Sbjct: 266 AGELIEM-AGGIRDG-RKLLAFQPGGGATAFLQEAELD-VPMDFAHVKKAGSSLGTGAVI 322

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY-- 379
           V+D  +  + AI R + FY  ESCG CTPCR+G  W+ ++++ L  G  +  +IDLL+  
Sbjct: 323 VLDDQSCPVAAIGRHARFYARESCGLCTPCRDGLPWVAKLLDALEAGHGKPEDIDLLHMH 382

Query: 380 -EVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            E++    GR+ C L   A  P++  ++ F
Sbjct: 383 VELA-GPSGRSFCDLMAGAMTPVKSGLERF 411


>gi|197120282|ref|YP_002140709.1| NADH dehydrogenase I subunit F [Geobacter bemidjiensis Bem]
 gi|197089642|gb|ACH40913.1| NADH dehydrogenase I, F subunit [Geobacter bemidjiensis Bem]
          Length = 593

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 160/378 (42%), Positives = 232/378 (61%), Gaps = 10/378 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMR 99
           +I+EVK SGLRGRGG GF TGMKWSF    C+  P    YL+ NADE +PG   DR I+ 
Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSF----CAASPGNHKYLICNADEGDPGAFMDRSILE 208

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYD 158
            +P+ +IEG +IA++AIG    ++YVR E+    + LQ A+D CY  G LG N +  G+D
Sbjct: 209 GDPYCVIEGMMIAAYAIGCDAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFD 268

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+ +  GAGA++CGEETAL+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V 
Sbjct: 269 FDMRIKKGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVR 328

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I+ +G  WY+  G +  +GTK+F+++G V +   VE    ++  ++I K CGGI     
Sbjct: 329 HIINKGFEWYASLGTDTTKGTKIFAVTGKVKHTGLVEVPAGMSVRDVIYKVCGGIANN-R 387

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S  C+PA ++    +DYD L + G+ +G+  ++VMD +T ++        
Sbjct: 388 KFKAVQAGGPSGGCIPA-EVLDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLT 446

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F K ESCG+C PCR G   M+ ++E++ +G  +  +ID L E+   I+  ++C LG  A 
Sbjct: 447 FTKMESCGKCVPCRIGLKAMLDILEKITEGRGEMADIDTLLEMGATIKKASLCGLGQTAP 506

Query: 399 WPIQGLIKNFRPLIEERI 416
            PI   +K FR   E  I
Sbjct: 507 NPILSTVKYFRNEYEAHI 524


>gi|39995452|ref|NP_951403.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA]
 gi|39982215|gb|AAR33676.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA]
 gi|298504451|gb|ADI83174.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400]
          Length = 591

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 168/420 (40%), Positives = 247/420 (58%), Gaps = 12/420 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T    +  +SL   +    +  ++K + E     +I+EVK SGLRGRGG GF TGMKW
Sbjct: 115 VMTGCGQIDPESLDAYLEEDGFKAIEKCVKEMTPAAVIDEVKKSGLRGRGGGGFPTGMKW 174

Query: 67  SFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           SF    C+  P    Y++ NADE +PG   DR I+  +P+ +IEG +IA++AIG    ++
Sbjct: 175 SF----CAATPGKLKYVICNADEGDPGAFMDRSILEGDPYCIIEGMMIAAYAIGCTAGYV 230

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    E LQ A+D CY  G LG N    G+D D+ +  GAGA++CGEETAL+ S+
Sbjct: 231 YVRAEYPLAIERLQKALDVCYEKGYLGKNVMGWGFDFDLRIKKGAGAFVCGEETALMASI 290

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++G PR +PPFPA  GL+G PT +NNVE+ A V  I+ +GA WY+  G +  +GTK+F
Sbjct: 291 EGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHIILKGADWYASLGTDTTKGTKIF 350

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G V +   VE    ++  E+I   CGGI        AV  GG S  C+P+ ++    
Sbjct: 351 AVTGKVKHTGLVEVPAGMSVREVIYNVCGGIANN-RKFKAVQAGGPSGGCIPS-EVLDTP 408

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DYD L + G+ +G+  ++VMD +T ++        F + ESCG+C PCR G   M+ ++
Sbjct: 409 VDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTRMESCGKCVPCRIGLKAMLDIL 468

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           ER+ +G  Q  +I+ L E+   I+  ++C LG  A  PI   IK FR   E  I+   RC
Sbjct: 469 ERITEGRGQAGDIETLLEMGSTIKKASLCGLGQTAPNPILSTIKYFREEYEAHIND-RRC 527


>gi|242239964|ref|YP_002988145.1| NADH dehydrogenase I subunit F [Dickeya dadantii Ech703]
 gi|242132021|gb|ACS86323.1| NADH-quinone oxidoreductase, F subunit [Dickeya dadantii Ech703]
          Length = 449

 Score =  289 bits (740), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 168/381 (44%), Positives = 229/381 (60%), Gaps = 6/381 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  VK +GLRGRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M 
Sbjct: 48  QDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH LIEG VI ++A+ A+  +I++RGE+I    +L+ A++E  A+GLLG N    G+D
Sbjct: 108 QMPHLLIEGMVIGAYALKAYRGYIFLRGEYIEAAANLRRAIEEAKAAGLLGKNILGTGFD 167

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G +G PT VNNVE++  VP
Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAMAGAWGKPTCVNNVETLCNVP 227

Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  G  WY G   G+  + GTKL   SG V  P   E     T  E++E + GG+R G
Sbjct: 228 AIVEHGIEWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A  PGG+    L    +    MD++ + + GS LGTA  + +D   +++     L
Sbjct: 288 L-KLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKAGSRLGTALAMAVDNEINMVSLTRNL 345

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G T CA   
Sbjct: 346 EEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDIETLEQICRYLAPGNTFCAHAP 405

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            A  P+Q  IK FR   E  I
Sbjct: 406 GAVEPLQSAIKYFRDEFEAGI 426


>gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5]
 gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5]
          Length = 597

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 155/394 (39%), Positives = 233/394 (59%), Gaps = 5/394 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + + +  G ++ +  +L EK  + +I  +  SGLRGRGGAGF TG+KW F     +D+
Sbjct: 129 EDIEEYIGTGGYEALGTVLTEKKPEDVIQILLDSGLRGRGGAGFPTGLKWKFAAANAADQ 188

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA   +IYVR E+    + L
Sbjct: 189 -KYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGASQGYIYVRAEYPIAVKRL 247

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +    GLLG N  + G+D DI +  GAGA++CGEETAL+ S+EG +G+PR +PPF
Sbjct: 248 EIAIGQAREYGLLGKNIFESGFDFDIELRLGAGAFVCGEETALMTSIEGNRGEPRPRPPF 307

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+  PT +NNVE+ A +P I+  G  W++  G E ++GTK+F++ G +N    VE
Sbjct: 308 PALKGLFQRPTILNNVETYANIPQIIVNGPEWFASMGTEKSKGTKVFALGGKINNTGLVE 367

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  E++E+  GG+  G     A   GG S  C+PA      I DYD L  +GS +
Sbjct: 368 IPMGTTLREIVEEIGGGVPNG-KKFKAAQTGGPSGGCIPAEHFDVPI-DYDNLIAIGSMM 425

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD    ++        F   ESCG+CTPCR GT  M+ ++E++ KG A   ++
Sbjct: 426 GSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRVGTRRMLEILEKITKGQATMADL 485

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           D L E+  +++  ++CALG  A  P+   +  FR
Sbjct: 486 DKLEELCYHLKSNSLCALGQTAPNPVLSTLHYFR 519


>gi|330954559|gb|EGH54819.1| NADH dehydrogenase I subunit F [Pseudomonas syringae Cit 7]
          Length = 440

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 160/386 (41%), Positives = 223/386 (57%), Gaps = 6/386 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG +G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGGWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +   EL E + G
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++ 
Sbjct: 290 GMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVS 347

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I+ L  +   +  G+T 
Sbjct: 348 LLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQPGDIETLLGLVNFLGPGKTF 407

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           CA    A  P+   IK FR   E  I
Sbjct: 408 CAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|251771122|gb|EES51706.1| NADH dehydrogenase, subunit F [Leptospirillum ferrodiazotrophum]
          Length = 1059

 Score =  289 bits (739), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 159/420 (37%), Positives = 245/420 (58%), Gaps = 11/420 (2%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62
           Q++I +   G +   S+ D ++   +  ++K+L     + +I  V  SGLRGRGGAGF T
Sbjct: 120 QNKIVSRRCGVIDPSSIDDYLATNGYKALEKVLGGMTPEQVIEVVTISGLRGRGGAGFPT 179

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCA 121
           G+KW F  +   D   Y+V NADE +PG   DR ++  +PH+++EG  IA+FAIG A   
Sbjct: 180 GLKWKFTLQSQGDE-KYVVCNADEGDPGAFMDRSVLEGDPHSVLEGMTIAAFAIGHAKKG 238

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETAL 178
           +IY R E+    + L  A+ +    G LG+N   + L +D++  V  GAGAY+CGEETAL
Sbjct: 239 YIYCRAEYPHAIKLLNRAIGQARERGYLGNNILGTSLSFDIE--VKEGAGAYVCGEETAL 296

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SL G +G P  KPPFPA  G++G PT +NNVE++A +P IL  G  WY+ FG E  +G
Sbjct: 297 LASLMGDRGMPWPKPPFPAQSGVWGKPTVINNVETLANIPHILLGGGEWYASFGTEKTKG 356

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK F+++G +     +E +   T  E++ +  GG+  G     A   GG S  C+P G +
Sbjct: 357 TKTFALTGKIKRTGLIEVNAGTTLKEIVYEIAGGM-SGTKKFKAAQLGGPSGGCIP-GSL 414

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D++ L   G+ +G+  +IV+D +  I+        F K ESCG+CTPCR+GT  M
Sbjct: 415 IETPIDFESLISAGAIMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKVM 474

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ER+ +G  + +++D L  +S  ++  ++C LG AA  P+   I+ FR   E+ I +
Sbjct: 475 LDMIERISEGRGEMKDLDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIKR 534


>gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 597

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 160/421 (38%), Positives = 249/421 (59%), Gaps = 7/421 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFST 62
           Q+RI  +N   +  +S+ + ++RG +  + + + E     +  EV  + LRGRGGAGF  
Sbjct: 115 QERIVLSNCGYINPESIDEYIARGGYQGLARAVTEFDPQGVTEEVINANLRGRGGAGFPA 174

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW F  +   +   Y+V NADE +PG   DR I+  +PH++IEG  IAS+AIGA   +
Sbjct: 175 GKKWKFASQE-PEPTKYMVCNADEGDPGAFMDRSILEGDPHSVIEGMAIASYAIGAEVGY 233

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           +Y+R E+      L+ A+ +    GLLG N    G++  + V  GAGA++CGE TAL  S
Sbjct: 234 VYIRAEYPLAVRRLKEAIQQAEELGLLGENILGSGFNFKLKVKEGAGAFVCGESTALTRS 293

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++G PR  PP     GL+G PT +NNVE++A V  IL +GA  ++ FG E + GTK+
Sbjct: 294 IEGRRGMPRPTPPRSTEKGLWGKPTVLNNVETLACVSFILSKGAEEFTKFGTEQSPGTKV 353

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G VN    VE  M I+  +++    GGI+ G + + AV  GG S  CLP  ++  +
Sbjct: 354 FALTGKVNNTGLVEVPMGISIRDIVFDIGGGIQHG-NKIKAVQIGGPSGGCLPEDKLDLS 412

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           + D+D L + G+ +G+  ++VMD  T ++        F + ESCG+CTPCREGT  M+ +
Sbjct: 413 V-DFDTLDDAGAMMGSGGLVVMDEETCVVDVSKFFLKFTQAESCGKCTPCREGTKRMLEI 471

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +ER+ KG  + ++IDLL E+ + I   ++C LG +A  P+   ++ F     E I++  R
Sbjct: 472 LERITKGQGEPKDIDLLKELGEMIINTSLCGLGKSAPNPVLSTLRYFEDEYREHIEK-GR 530

Query: 422 C 422
           C
Sbjct: 531 C 531


>gi|15679545|ref|NP_276662.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622670|gb|AAB86023.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 630

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 158/415 (38%), Positives = 243/415 (58%), Gaps = 12/415 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           RI      +  +++   ++ G +  + + LE   D +I EVK SGLRGRGGAGF T +KW
Sbjct: 135 RILRRCGLIDPENMGHYLATGGYRGLMRALEMEPDEVIEEVKDSGLRGRGGAGFPTWLKW 194

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S   +  S+   YL+ NADE +PG   +R ++  +PH L+EG +IAS+A+GA  A+IY R
Sbjct: 195 SLCRQEASE-VKYLICNADEGDPGAFMNRSLIEGDPHALLEGILIASYAVGAREAYIYCR 253

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    E L+ A+ +    GLLG +    G+D+DI +  GAGA++CGEETAL+ S+EGK
Sbjct: 254 AEYPLALERLRVAISDLRNLGLLGKDILGSGFDLDIKIKEGAGAFVCGEETALISSIEGK 313

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PPFP   GL+G PT +NNVE++A V  I++ GA +++  G   +RGTK FS+ 
Sbjct: 314 RGMPRTRPPFPTTRGLWGKPTVINNVETLAAVSMIMQHGADYFNSLGTPESRGTKTFSLV 373

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V     +E  +  T  E+I    GG+  G   L AV  GG S  CLPA  +   I DY
Sbjct: 374 GDVRRTGLIEVPLGTTLREVIFDIGGGVVDG--ELKAVQIGGPSGGCLPAELIDTGI-DY 430

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L   G+ +G+  ++V+   T +++       F + ESCG+C PCR GT  M+ ++  +
Sbjct: 431 DSLTSAGAIMGSGGLVVLSDRTCMVELARYFLEFTQRESCGKCVPCRVGTRQMLMILNDI 490

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+G  +  + D+L +V++++   ++C LG  +  P+   ++ F        D+YH
Sbjct: 491 VEGSGRPEDPDILRDVAESVRAASLCGLGQTSPNPVLTTLRYFE-------DEYH 538


>gi|78222328|ref|YP_384075.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78193583|gb|ABB31350.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Geobacter metallireducens GS-15]
          Length = 569

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 154/385 (40%), Positives = 232/385 (60%), Gaps = 9/385 (2%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +  EV  SGLRGRGGAG+ TG+KW+   K   +R  Y+V N DE +PG   DR IM  
Sbjct: 161 DDVCREVSVSGLRGRGGAGYPTGVKWNLARKANGER-KYVVANGDEGDPGAYMDRSIMES 219

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGY 157
           +PH ++EG  +A +AIGA   FIYVRGE+      L+AA+     +GLLGS    S   +
Sbjct: 220 DPHRILEGMALAGYAIGAEQGFIYVRGEYYLAGRRLEAAIRAAERAGLLGSRVFGSNFNF 279

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
            +DI    GAGA++CGEET+L+ S+ G++GQPR +PP+PA  GL+GCPT +NNVE++A V
Sbjct: 280 RIDI--RTGAGAFVCGEETSLMASIMGRRGQPRQRPPYPAQQGLWGCPTLINNVETLATV 337

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           P I+ +G +WY+G G   ++GTK+++++G V     +E  M  T  E++    GGI GG 
Sbjct: 338 PAIMGKGGNWYAGIGSAGSKGTKVYALAGQVEIAGLIEVPMGTTLREVVFDIGGGIPGG- 396

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               A   GG S  C+P+G++    +DY+ ++ +G+ +G+  +I+MD ++ +        
Sbjct: 397 KRFKAAQSGGPSGGCIPSGELD-TPLDYESMQRVGTIMGSGGLIIMDETSCMPDVASFFL 455

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F + ESCG+C PCR GT  M R++ R+  G A   ++  L E+ + +   ++C LG  A
Sbjct: 456 DFCRDESCGKCVPCRVGTVEMHRLLRRITGGTATMDDLAKLEELCELVGAASLCGLGMTA 515

Query: 398 AWPIQGLIKNFRPLIEERIDQYHRC 422
             P+   ++ FR    E I + HRC
Sbjct: 516 PNPVLSTLRYFRDEYVEHISR-HRC 539


>gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
 gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
          Length = 594

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/400 (40%), Positives = 244/400 (61%), Gaps = 5/400 (1%)

Query: 19  SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           ++ D +S   +  ++K+L E   + +I E+K SGLRGRGG GF TG+KW F  +   ++ 
Sbjct: 127 NIEDYLSHDGYKALEKVLTEMSPEEVIEEIKESGLRGRGGGGFPTGLKWQFTAQSEGEQ- 185

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V NADE +PG   DR I+  +PH++IE   IA +A+GA+  ++YVR E+    + ++
Sbjct: 186 KYIVCNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAVGANQGYVYVRAEYPLAVKRME 245

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ +   +G +G+N     +  D+ +  GAGA++CGEETAL+ S+EG++G+PR KPPFP
Sbjct: 246 KAISDARENGFIGNNIFDTNFKFDLEIRVGAGAFVCGEETALMASIEGERGEPRPKPPFP 305

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNVE+ A +P I+ +GA W++  G E ++GTK+F+++G +N    VE 
Sbjct: 306 AQSGLWGKPTLINNVETYANIPVIILKGAKWFNHIGTEKSKGTKVFAVAGDINTTGLVEV 365

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  T  E+I   CGGI  G     A   GG S  C+P   +  + MDYD L E+GS +G
Sbjct: 366 PMGTTLREIIFDICGGIPEG-KKFKAAQTGGPSGGCIPREHLDIS-MDYDSLIEIGSMMG 423

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  +IVMD +T ++        F + ESCG+C PCR GT  M+ ++ER+ KG  +  +I+
Sbjct: 424 SGGLIVMDENTCMVDVARFFLDFTQDESCGKCVPCRIGTKRMLEILERITKGQGEPGDIE 483

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            L ++ K I+   +C LG  A  P+   IK FR   E  I
Sbjct: 484 KLEKLGKYIKENALCGLGQTAPNPVLSTIKYFRDEYEAHI 523


>gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
 gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
          Length = 596

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/413 (38%), Positives = 245/413 (59%), Gaps = 8/413 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q RI   N+  +   ++ + ++R  +  + K+L E   + +I EVK SGLRGRGGA
Sbjct: 110 FFKNQVRIALRNVGFIDPLNIEEYIARDGYSALAKVLTEMTPEEVIEEVKKSGLRGRGGA 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K   +   Y+V NADE +PG   DR IM  +PH++IEG +I  +AIGA
Sbjct: 170 GFPTGLKWELGKKAKGEE-KYIVCNADEGDPGAFMDRSIMEGDPHSVIEGMLIGGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEET 176
              F+Y+R E+    + L AA+++    GLLG N  LG  +  DI +  GAGA++CGEET
Sbjct: 229 KKGFVYIRAEYPLAIKRLTAALEQAREYGLLGENI-LGTNFSFDIEIRIGAGAFVCGEET 287

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EGK+G PR +PPFP N GL+G PT +NNVE+ A +P I+  G+ W+S FG E +
Sbjct: 288 ALIASIEGKRGMPRPRPPFPVNSGLWGKPTVINNVETWANIPPIILNGSEWFSKFGTEKS 347

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F+++G +N    +E  M IT  E++    GG   G     AV  GG +  C+PA 
Sbjct: 348 KGTKVFALAGKINMTGLIEVPMGITLREVVYDI-GGGIPGGKKFKAVQIGGPAGGCIPAE 406

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +   I DY+ +  +G+ +G+  +IVMD    ++        F + ESCG+C PCR GT 
Sbjct: 407 YLDTPI-DYESITALGAIMGSGGLIVMDEDNCMVDVAKFFLSFTQDESCGKCVPCRVGTK 465

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            M+ +++++ KG   + ++  L +++  +   ++C LG  A  P+   +K FR
Sbjct: 466 RMLEILDKITKGEGTEEDLVELEQLAYTVRNTSLCGLGKGAPNPVLTTLKYFR 518


>gi|229591257|ref|YP_002873376.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens SBW25]
 gi|312961690|ref|ZP_07776188.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens
           WH6]
 gi|229363123|emb|CAY50142.1| NADH dehydrogenase I chain F [Pseudomonas fluorescens SBW25]
 gi|311283949|gb|EFQ62532.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens
           WH6]
          Length = 451

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/381 (41%), Positives = 224/381 (58%), Gaps = 6/381 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D I+  VK +GL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M 
Sbjct: 55  QDDIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDESINIRYLLCNADEMEPNTWKDRMLME 114

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH LIEG +I++ A+  +  +I++RGE+    + L  AV+E  A+GLLG N    G+D
Sbjct: 115 QLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLNRAVEEAKAAGLLGKNILGSGFD 174

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP
Sbjct: 175 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVP 234

Query: 219 TILRRGASWYSGFGRENNR--GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  G  WY    RE +   GTKL   SG V  P   E    +T  EL E + GG+R G
Sbjct: 235 AIIADGVDWYKSLAREGSEDMGTKLMGFSGKVKNPGLWELPFGVTARELFEDYAGGMRDG 294

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
           +  L A  PGG+    L    +  A M   G+ ++G+ +GT   + +D + +++  +  +
Sbjct: 295 Y-TLKAWQPGGAGTGFLLPEHLD-AQMYAGGIGKVGTRMGTGLAMAVDNTVNMVSLLRNM 352

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L  G  ++ +I+ L  +   +  G+T CA   
Sbjct: 353 EQFFARESCGFCTPCRDGLPWSVKLLMALENGEGREGDIETLLGLVGFLGPGKTFCAHAP 412

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            A  P+   IK FR   E  I
Sbjct: 413 GAVEPLGSAIKYFRSEFEAGI 433


>gi|262373371|ref|ZP_06066650.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter junii
           SH205]
 gi|262313396|gb|EEY94481.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter junii
           SH205]
          Length = 441

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/381 (40%), Positives = 224/381 (58%), Gaps = 7/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLDVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 114 HQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEALEQIRAKGYLGENILGSGWNFEM 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 174 YVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233

Query: 222 RRGASWYSGFG--RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY      +  + GTK++  SG V +P   E     T  E+IE H GG+R G   
Sbjct: 234 LRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMRDGL-T 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   L A  +    MD + + + GS LGT  ++V+D +  ++ A   L  F
Sbjct: 293 LKAWLPGGASTDFLAAEHID-LPMDAESIMKAGSRLGTCLLMVVDETQCMVSATRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +  +I  L E++K +  G+T CA    A 
Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALESGEGKMEDIQHLSELTKKLWIGKTFCAHAPGAM 411

Query: 399 WPIQGLIKNFRPLIEERIDQY 419
            P+ G +K FR   E ++  +
Sbjct: 412 EPLMGALKYFRHEFEAKVKTH 432


>gi|188997422|ref|YP_001931673.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932489|gb|ACD67119.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 427

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/393 (43%), Positives = 237/393 (60%), Gaps = 16/393 (4%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + + ++ G +  + K L +   + II  V+ S LRGRGGAGF TG KW F   + + +P 
Sbjct: 31  IEEYITTGGYSALKKALNRFTPEDIIVLVEESTLRGRGGAGFPTGRKWRFA--ISNPKPR 88

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV NADESEPGT KDR I+  +PH LIEG +I+++AIGA   FIY+RGE+    + L+ 
Sbjct: 89  YLVCNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAERGFIYIRGEYPAGAKILEN 148

Query: 139 AVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+ E    G LG N  LG D   DI V+ GAGAYICGEETAL+ESLEGK+G PRLKPP+P
Sbjct: 149 AIKEARERGFLGKNI-LGTDFSFDISVYRGAGAYICGEETALIESLEGKRGHPRLKPPYP 207

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
            + GL+G PT VNNVE++A +P I+    S+Y   G     G KLF ISG VN P   E 
Sbjct: 208 VSEGLFGKPTVVNNVETLANIPIIITY-ESYYMNIGPAGYYGPKLFPISGKVNKPGVYEL 266

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +M IT  ELI+   GG++ G     AV  G   V    + +     MDY      G G G
Sbjct: 267 TMDITLRELIDI-AGGMKDG-KKFKAVFAGALGV---YSERDLDIPMDYS---PKGFG-G 317

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T   IV+     II ++  ++ F+ HESCG+CTPCR GT  ++ ++++  +GIA ++++ 
Sbjct: 318 TGTTIVLAEDDCIIDSLIVIAEFFHHESCGKCTPCRIGTYELLNILKKFQEGIATEKDLQ 377

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  + +NI   +IC LG +A   +   ++ F+
Sbjct: 378 YLEHLGRNIPVGSICGLGYSAPNALMDALRKFK 410


>gi|193076538|gb|ABO11196.2| NADH dehydrogenase I chain F [Acinetobacter baumannii ATCC 17978]
          Length = 444

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 157/379 (41%), Positives = 226/379 (59%), Gaps = 8/379 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 55  VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 113

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 114 HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFEL 173

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 174 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 233

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE+H GG+R G   
Sbjct: 234 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA  +    MD + + + GS LGT  ++V+D +  ++     L  F
Sbjct: 293 LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA      
Sbjct: 352 FARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHATRCE 411

Query: 399 WP-IQGLIKNFRPLIEERI 416
           W  +   +K+FR   E ++
Sbjct: 412 WSRLWVALKHFRSEFEAKV 430


>gi|330889656|gb|EGH22317.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. mori str.
           301020]
          Length = 453

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/387 (41%), Positives = 225/387 (58%), Gaps = 7/387 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESMSITFD-ELIEKHC 270
           +  VP I+  G  WY    RE   + GTKL   SG V  P   E    +    EL E + 
Sbjct: 230 LCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLGELPFGVQAPRELFEDYA 289

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GG+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT   + +D S +++
Sbjct: 290 GGMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMV 347

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRT 389
             +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q  +I+ L  +   +  G+T
Sbjct: 348 SLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKT 407

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERI 416
            CA    A  P+   IK FR   E  I
Sbjct: 408 FCAHAPGAVEPLGSAIKYFRSEFEAGI 434


>gi|126640814|ref|YP_001083798.1| NADH dehydrogenase I chain F [Acinetobacter baumannii ATCC 17978]
          Length = 395

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 157/379 (41%), Positives = 226/379 (59%), Gaps = 8/379 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +M   P
Sbjct: 6   VLEVIKAATVKGRGGAGFPAGIKWSLMAP-NDGGPRYLICNADEMEPGTFKDRLLMEKLP 64

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G++ ++
Sbjct: 65  HQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFEL 124

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+
Sbjct: 125 HVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIM 184

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE+H GG+R G   
Sbjct: 185 LRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMRDGL-K 243

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA  +    MD + + + GS LGT  ++V+D +  ++     L  F
Sbjct: 244 LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEF 302

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA      
Sbjct: 303 FARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHATRCE 362

Query: 399 WP-IQGLIKNFRPLIEERI 416
           W  +   +K+FR   E ++
Sbjct: 363 WSRLWVALKHFRSEFEAKV 381


>gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
 gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
          Length = 626

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 224/370 (60%), Gaps = 4/370 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +  SGLRGRGGAGF TG+KW F  K       Y+  NADE +PG   DR ++  
Sbjct: 182 DDVIQVILDSGLRGRGGAGFPTGLKWKFA-KGNQAEQKYVCCNADEGDPGAFMDRSVLEG 240

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH ++E   IA +AIGA   +IYVR E+    E L+ A+ +    G+LG +    G+D 
Sbjct: 241 DPHVVLEAMTIAGYAIGASQGYIYVRAEYPIAIERLEIAIRQAREYGMLGKDIFGSGFDF 300

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI +  GAGA++CGEETAL+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P 
Sbjct: 301 DIDLRLGAGAFVCGEETALMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETWANIPQ 360

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ +G  W+ G G E ++GTK+F++ G ++    VE  M  T  E++E+  GGI  G   
Sbjct: 361 IILKGPEWFVGMGTEKSKGTKVFALGGKIHNTGLVEIPMGTTLREIVEEIGGGIPNG-KK 419

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A   GG S  C+PA  +   I DYD L E+GS +G+  +IVMD +T ++        F
Sbjct: 420 FKAAQTGGPSGGCIPAEHLDVPI-DYDNLMEIGSMMGSGGLIVMDENTCMVDIAKFFLEF 478

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR GT  M+ +++++ KG A   ++D L E+  +++  ++CALG  A  
Sbjct: 479 TVDESCGKCTPCRIGTRRMLELLDKITKGQATMEDLDKLEELCYHLKDNSLCALGQTAPN 538

Query: 400 PIQGLIKNFR 409
           P+   ++ FR
Sbjct: 539 PVLSTLRYFR 548


>gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis]
          Length = 846

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 163/408 (39%), Positives = 247/408 (60%), Gaps = 8/408 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +++++ ++ G +  + K L   +   +I  +  SGLRGRGGAGF TG KW++   V  + 
Sbjct: 371 ENINEYIASGGYFGLAKALTAMKPTEVIETITCSGLRGRGGAGFLTGRKWAYTAAV-KET 429

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V NADE +PG   DR I+  +PH ++E   IA +AIGA   F+YVR E+      L
Sbjct: 430 VKYVVCNADEGDPGAFMDRSILEGDPHAVLEAMTIAGYAIGAQQGFVYVRAEYPIAVHRL 489

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+D+ + +GLLG N    G+  DI +  GAGA++CGEETALL S+ GK+G+PR +PP+
Sbjct: 490 EVAIDQAHQAGLLGQNILGTGFSFDIEIRLGAGAFVCGEETALLNSVSGKRGEPRTRPPY 549

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE+ A +P I+ +GA WY+  G   ++GTK+FS++G +N    +E
Sbjct: 550 PAVSGLWGKPTLLNNVETYANIPQIICKGADWYAAMGTSGSKGTKIFSLAGKINNTGLIE 609

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  +   +I    GGI  G     AV  GG S  CLPA  +   I DYD L ++GS +
Sbjct: 610 VPMGTSLRTIIYGIGGGIPKG-KAFKAVQTGGPSGGCLPAEYLDIPI-DYDSLMKIGSMM 667

Query: 316 GTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           G+  +IVMD  TD +  I R  + F + ESCG+CTPCR GT  ++ ++ R+ +G    ++
Sbjct: 668 GSGGLIVMDE-TDCMVDIARFYLEFTQDESCGKCTPCRIGTRRLLEIITRITEGKGTMKD 726

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           ++LL E+  +I+  ++C LG  A  P+   +++FR   E  I +  RC
Sbjct: 727 LELLEELGHDIKEASLCGLGQTAPNPVLSTLRHFRHEYEAHIKE-KRC 773


>gi|160935016|ref|ZP_02082402.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
 gi|156866469|gb|EDO59841.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
          Length = 571

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/407 (38%), Positives = 240/407 (58%), Gaps = 6/407 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +++ + +++  +  + K+L E   + +I  +K SGLRGRGGAGF TG+KWS      +D+
Sbjct: 103 ENIDEYIAQDGYAALGKVLTEMTPEQVIQVIKDSGLRGRGGAGFPTGVKWSLAAGNKADQ 162

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA   +IYVR E+    + L
Sbjct: 163 -KYVCCNADEGDPGAFMDRSVLEGDPHCVLEAMAIAGYAIGATKGYIYVRAEYPIAVKRL 221

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +    GLLG N    G+D DI +  GAGA++CGEETAL+ S+EGK+G+PR +PP+
Sbjct: 222 EIAIGQAREYGLLGKNIFDSGFDFDIQLRLGAGAFVCGEETALMTSIEGKRGEPRPRPPY 281

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G P+ +NNVE+ A +  I+  GA W++  G E ++GTK+F++ G + +   VE
Sbjct: 282 PAVKGLFGKPSILNNVETYANIAQIILHGAEWFNSVGTEKSKGTKVFALGGKIKHTGLVE 341

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  E++E+  GG+  G     A   GG S  C+PA  +   I DYD L  +GS +
Sbjct: 342 IPMGTTLREIVEEIGGGVPDG-KKFKAAQTGGPSGGCIPASLIDTPI-DYDNLIAIGSMM 399

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD +T ++        F   ESCG+CTPCR GT  ++ ++ ++  G     +I
Sbjct: 400 GSGGLIVMDETTCMVDIAKFFLEFTVDESCGKCTPCRVGTKRLLEMLNKITSGTGTMEDI 459

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           D + E+   I+   +C LG  A  P+   ++ FR   E  + + HRC
Sbjct: 460 DKMEELCYYIKDNALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-HRC 505


>gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
 gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
          Length = 624

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 169/417 (40%), Positives = 256/417 (61%), Gaps = 6/417 (1%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGF 60
            +Q+RI  +N   +  + L D ++ G +  + K +LE   + +  EV  SGLRGRGG GF
Sbjct: 140 ANQNRIALSNCGNIDPEDLDDYLAHGGYKALSKALLEMSPEEVCKEVTESGLRGRGGGGF 199

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG KW F  +  +D+  Y++VN DE +PG   DR IM  +PH +IEG  IA +A GA  
Sbjct: 200 PTGKKWEFAYREKADQ-KYVIVNGDEGDPGAFMDRSIMEGDPHRVIEGITIAGYATGATK 258

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+    + L+ A+++ Y  GLLG +    G+D D+++  GAGA++CGEETAL+
Sbjct: 259 GYIYVRAEYPLAVKRLRKAINDAYDQGLLGEDILGSGFDFDLMIKEGAGAFVCGEETALM 318

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK+G P  KPPFPA  GL+G PTT+NNVE++A VP I+ +GA W++  G EN+ GT
Sbjct: 319 ASIEGKRGMPNPKPPFPAQSGLWGKPTTINNVETLANVPQIILKGADWFTSLGTENSPGT 378

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K F+I+G V     +E  M +T  EL+    GGI+   +   AV  GG S  CL    + 
Sbjct: 379 KTFAITGDVANTGLIEVPMGMTLRELVYDIGGGIKNN-NKFKAVQIGGPSGGCLTEEHLD 437

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+E+G+ +G+  ++VMD +T +++       F ++ESCG+C  CREGT  M+
Sbjct: 438 -MPMDFDSLQEVGAMIGSGGLVVMDENTCMVEVARFFMEFTQNESCGKCVLCREGTKQML 496

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +++ER+V+G     ++DLL E++  ++  ++C LG  A  P+   +K FR   E  +
Sbjct: 497 KILERIVEGKGTMEDLDLLEELALAVKDGSLCGLGKTAPNPVLTTLKYFRDEYEAHV 553


>gi|332295878|ref|YP_004437801.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM
           14796]
 gi|332178981|gb|AEE14670.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM
           14796]
          Length = 537

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/413 (37%), Positives = 244/413 (59%), Gaps = 8/413 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGA 58
             + Q RI   N   +  + +++ +++G ++++ K L       +I  +K S LRGRGGA
Sbjct: 109 FFSKQTRIVLRNCGFINPEDITEYIAQGGYESLGKALTSMSSADVIKIIKDSLLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K  SD   Y++ NADE +PG   +R ++  +PH+++EG  IA +A+GA
Sbjct: 169 GFPTGLKWELAKKQTSDI-KYIICNADEGDPGAYMNRSVLEGDPHSVLEGMTIAGYAVGA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEET 176
              FIY+R E+    + LQ A+ +    GLLG N  LG  +  DI +  GAGA++CGEET
Sbjct: 228 QKGFIYIRAEYPLAVKRLQIAIKQAKEIGLLGKNI-LGTNFSFDIELRIGAGAFVCGEET 286

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S EGK+G+PR KPP+P  +GL+G PT +NNVE++A VP I+ +GA+++   G E +
Sbjct: 287 ALINSTEGKRGEPRKKPPYPIEIGLFGRPTVINNVETLANVPIIIEKGANFFKQIGTEKS 346

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK FS+ G VN    +E  +  +   ++    GGI  G     A   GG S   +PA 
Sbjct: 347 PGTKAFSLVGKVNIAGLIEVPLGTSLRTIVFDIGGGIPEGH-TFKAAQTGGPSGGVIPAN 405

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    MDY+ L ++G+ +G+  +IVMD ++ ++        F   ESCG+C PCREGT 
Sbjct: 406 YID-IPMDYENLPQLGAIMGSGGLIVMDETSCMVDVAKFFLKFTVDESCGKCVPCREGTR 464

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            M+ ++E++ +G    +++DLL ++   I+  ++C LG  A  P+   +++FR
Sbjct: 465 QMLNILEKITRGGGTMKDLDLLEKLGNVIKSTSLCGLGQTAPNPVLSTLRHFR 517


>gi|218780402|ref|YP_002431720.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761786|gb|ACL04252.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit (NuoF-like)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1044

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 246/421 (58%), Gaps = 7/421 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62
           Q+R    L G +   S+   ++ G +  + ++L     + +  EV  + LRGRGGAGF  
Sbjct: 134 QERRVLALCGRIDPTSIEHYIAAGGYQALVRVLSGMAPEQVAQEVIDAKLRGRGGAGFPA 193

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW F  +  S  P Y++ NADE +PG   DR I+  +PH++IEG +I +FA+GA   F
Sbjct: 194 GLKWKFA-RQSSANPKYIICNADEGDPGAFMDRAILEGDPHSVIEGMIIGAFAMGARYGF 252

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    E L  A+ +    G+LG N    G+   + +  GAGA++CGEETAL+ S
Sbjct: 253 IYVREEYPIAVEHLNCAIAQAGELGILGENILGTGFSFSLSLKMGAGAFVCGEETALMAS 312

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G PR +PPFPA  G+ G P+ +NNVE+ A VP IL+ GA WY+  G EN++GTK+
Sbjct: 313 IEGKRGMPRARPPFPAQSGVDGKPSNINNVETFANVPLILKNGAGWYAQVGTENSKGTKI 372

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS++G VN    VE  +  +  E++    GGI  G     AV  GG S  C+PA Q    
Sbjct: 373 FSLAGKVNNTGLVEVPIGTSIREVVFDIGGGIPKGR-KFKAVQMGGPSGGCVPA-QFLNL 430

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DYD L+++G+ +G+  ++VMD +  +++       F + ESCG+C+PCR GT  ++ +
Sbjct: 431 SIDYDTLQKIGAIMGSGGMVVMDENNCMVEIARFFLAFTQSESCGKCSPCRLGTTQLLEI 490

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+  G  +  +I+ + E+ + +   ++C LG   A P    ++ F    E+ I + +R
Sbjct: 491 LTRITTGRGRLEDIETIKEIGRTMTEASLCGLGQNCAKPAISTLQYFLKEYEDHILE-NR 549

Query: 422 C 422
           C
Sbjct: 550 C 550


>gi|237755575|ref|ZP_04584192.1| NADH-quinone oxidoreductase, f subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692274|gb|EEP61265.1| NADH-quinone oxidoreductase, f subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 427

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 171/393 (43%), Positives = 236/393 (60%), Gaps = 16/393 (4%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + + ++ G +  + K L +   + II  V+ S LRGRGGAGF TG KW F   V + +P 
Sbjct: 31  IEEYITTGGYSALKKALNRFTPEDIIVLVEESTLRGRGGAGFPTGRKWRFA--VSNSKPR 88

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV NADESEPGT KDR I+  +PH LIEG +I+++AIGA   FIY+RGE+    + L+ 
Sbjct: 89  YLVCNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAERGFIYIRGEYPAGAKILEN 148

Query: 139 AVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+ E    G LG N  LG D   DI V+ GAGAYICGEETAL+ESLEGK+G PRLKPP+P
Sbjct: 149 AIKEARERGFLGKNI-LGTDFSFDISVYRGAGAYICGEETALIESLEGKRGHPRLKPPYP 207

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
            + GL+G PT VNNVE++A +P I+    S+Y   G     G KLF ISG VN P   E 
Sbjct: 208 VSEGLFGKPTVVNNVETLANIPIIVTY-ESYYMNIGPAGYYGPKLFPISGKVNKPGVYEL 266

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +M IT  ELI+   GG++ G     AV  G      L + +     MDY      G G G
Sbjct: 267 TMDITLRELIDI-AGGMKDG-KKFKAVFAGALG---LYSERDLDIPMDYS---PKGFG-G 317

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T   IV+     II ++  ++ F+ HESCG+CTPCR G+  ++ ++++  +G A ++++ 
Sbjct: 318 TGTTIVLAEDDCIIDSLIVIAEFFHHESCGKCTPCRIGSYELLNILKKFQEGTATEKDLQ 377

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  + +NI   +IC LG +A   +   +K F+
Sbjct: 378 YLEHLGRNIPVGSICGLGYSAPNALMDALKKFK 410


>gi|119489274|ref|ZP_01622081.1| hydrogenase subunit [Lyngbya sp. PCC 8106]
 gi|119454748|gb|EAW35893.1| hydrogenase subunit [Lyngbya sp. PCC 8106]
          Length = 538

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 145/378 (38%), Positives = 234/378 (61%), Gaps = 9/378 (2%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           I E   + +++E+  SGLRGRGGAG+ TG+KW+ + K+   +  Y++ NADE +PG   D
Sbjct: 148 IYEMTPEDVVSEITKSGLRGRGGAGYPTGLKWATVAKMPPGQ-KYVICNADEGDPGAFMD 206

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152
           R ++  +PH ++EG  IA +A+GA   +IYVR E+      LQ A+ +    G+LG+   
Sbjct: 207 RSVLESDPHRILEGMAIAGYAVGATQGYIYVRAEYPLAISRLQKAIQQAKRQGILGTQVF 266

Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            S + + VDI V  GAGA++CGEETAL+ S++G +G PR +PP+PA  GL+G PT +NNV
Sbjct: 267 GSPVNFTVDIRV--GAGAFVCGEETALIASIDGNRGVPRPRPPYPAVSGLWGEPTLINNV 324

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++A +  I+R+GA W++  G E ++GTK+FS++G +     +E  M I+  E++E+  G
Sbjct: 325 ETLANIAPIIRKGADWFASIGTEKSKGTKIFSLTGKIRNTGLIEVPMGISLREIVEEMGG 384

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+  G   + AV  GG S  C+P   +    +DY+ L ++GS +G+  ++VMD+ T +I+
Sbjct: 385 GVPDG--EVKAVQTGGPSGGCIPV-HLLDTPVDYESLTKLGSMMGSGGMVVMDQGTSMIQ 441

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
                  F + ESCG+C PCR GT  M +++ +L+K  A   +++ L E+ + ++  ++C
Sbjct: 442 VAQFYMDFCREESCGKCIPCRAGTVQMYQLLTKLIKKQATAADLEKLKELCEMVKATSLC 501

Query: 392 ALGDAAAWPIQGLIKNFR 409
            LG  A  PI   +  F 
Sbjct: 502 GLGQTAPNPIVSTLHYFE 519


>gi|157779399|gb|ABV71243.1| NADPH-dependent sulfur oxidoreductase B subunit [Thermococcus
           litoralis DSM 5473]
          Length = 555

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 151/403 (37%), Positives = 239/403 (59%), Gaps = 4/403 (0%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N   +  + + + ++ G ++ + K L+   + II+ +  SGLRGRGGAGF TG+KW 
Sbjct: 72  VLENSGYINPEDIEEYIAAGGYEALKKALKMEPEEIIDIITKSGLRGRGGAGFPTGLKWK 131

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F  +   D   Y++ NADE +PG   DR+++  +PH +IEG +I ++AIGA   FIYVR 
Sbjct: 132 FTRQAKGDE-KYVICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATKGFIYVRA 190

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    + L+ A+ +    G LG N    G+  DI++  GAGA++CGEETAL+ S+EGK+
Sbjct: 191 EYPLAVKRLRIALQQARERGFLGENILGSGFSFDIVIKEGAGAFVCGEETALIASIEGKR 250

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PR +PP+PA  GL+G PT +NNVE+ A VP I+R G   Y+  G E ++GTK+F++SG
Sbjct: 251 GMPRPRPPYPAQKGLFGKPTNINNVETWANVPWIIRHGPEAYASLGTEKSKGTKVFALSG 310

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            + +   VE  M IT  E++ +  GG + G   + AV  GG S  C+P  ++    +DY+
Sbjct: 311 KIKHGGNVEVPMGITLREILYEIGGGTKTG-KKIKAVQLGGPSGGCIPE-ELFDTPVDYE 368

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   G+ +G+  ++VMD  T ++        F   ESCG+CT CR GT  M  +++++ 
Sbjct: 369 SVNATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRIGTKRMWEILDKIT 428

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           KG     +I  L E++  ++  ++C LG  A  P+   ++ FR
Sbjct: 429 KGQGTMEDIKELEELAPMVKAGSLCGLGQTAPNPVLTTLQYFR 471


>gi|271501264|ref|YP_003334289.1| NADH-quinone oxidoreductase subunit F [Dickeya dadantii Ech586]
 gi|270344819|gb|ACZ77584.1| NADH-quinone oxidoreductase, F subunit [Dickeya dadantii Ech586]
          Length = 449

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/381 (43%), Positives = 228/381 (59%), Gaps = 6/381 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  VK +GLRGRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M 
Sbjct: 48  QDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH L+EG +I ++A+ A+  +I++RGE++    +L+ A+ E   +GLLG N    G+D
Sbjct: 108 QMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAANLRRAIAEATEAGLLGKNIMGTGFD 167

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G +G PT VNNVE++  VP
Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAWGKPTCVNNVETLCNVP 227

Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  G  WY G   G+  + GTKL   SG V  P   E     T  E++E + GG+R G
Sbjct: 228 AIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A  PGG+    L    +    MD++ + + GS LGTA  + +D   +++     L
Sbjct: 288 L-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKAGSRLGTALAMAVDNEINMVSLTRNL 345

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G T CA   
Sbjct: 346 EEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGNTFCAHAP 405

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            A  P+Q  IK FR   E  I
Sbjct: 406 GAVEPLQSAIKYFRDEFEAGI 426


>gi|251789018|ref|YP_003003739.1| NADH dehydrogenase I subunit F [Dickeya zeae Ech1591]
 gi|247537639|gb|ACT06260.1| NADH-quinone oxidoreductase, F subunit [Dickeya zeae Ech1591]
          Length = 449

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 164/381 (43%), Positives = 228/381 (59%), Gaps = 6/381 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  VK +GLRGRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M 
Sbjct: 48  QDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLME 107

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
             PH L+EG +I ++A+ A+  +I++RGE++    +L+ A+ E   +GLLG N    G+D
Sbjct: 108 QMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAANLRRAIAEATEAGLLGKNIMGTGFD 167

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA+ G +G PT VNNVE++  VP
Sbjct: 168 FELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASAGAWGKPTCVNNVETLCNVP 227

Query: 219 TILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            I+  G  WY G   G+  + GTKL   SG V  P   E     T  E++E + GG+R G
Sbjct: 228 AIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG 287

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A  PGG+    L    +    MD++ + + GS LGTA  + +D   +++     L
Sbjct: 288 L-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKAGSRLGTALAMAVDNEINMVSLTRNL 345

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGD 395
             F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G T CA   
Sbjct: 346 EEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGNTFCAHAP 405

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            A  P+Q  IK FR   E  I
Sbjct: 406 GAVEPLQSAIKYFRDEFEAGI 426


>gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
 gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
          Length = 595

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 150/370 (40%), Positives = 221/370 (59%), Gaps = 4/370 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + +I  +  SGLRGRGGAGF TG+KW F     +D+  Y+  NADE +PG   DR ++  
Sbjct: 151 EEVIQVILDSGLRGRGGAGFPTGLKWKFAAANEADQ-KYVCCNADEGDPGAFMDRSVLEG 209

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH ++E   IA +AIGA   +IYVR E+    E L+ A+ +    GLLG N  + G+D 
Sbjct: 210 DPHVVLEAMAIAGYAIGASQGYIYVRAEYPIAVERLKIAIGQAREYGLLGKNIFESGFDF 269

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI +  GAGA++CGEETAL+ S+EG +G+PR +PPFPA  GL+  PT +NNVE++A +P 
Sbjct: 270 DIDIRLGAGAFVCGEETALMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETLANIPQ 329

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  G  W+S  G E ++GTK+F++ G V     VE  M  T  E++E+  GGI  G   
Sbjct: 330 IILNGPEWFSSMGTEKSKGTKVFALGGKVKNTGLVEIPMGTTLREIVEEIGGGIPNG-KK 388

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A   GG S  C+PA      I DYD L  +GS +G+  +IVMD  T ++        F
Sbjct: 389 FKAAQTGGPSGGCIPAEHFDVPI-DYDNLIAIGSMMGSGGLIVMDEDTCMVDIAKFFLEF 447

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+C PCR GT  M+ ++E++  G     ++D L +++ +++  ++CALG  A  
Sbjct: 448 TVDESCGKCAPCRIGTRRMLEILEKITNGQGTMEDLDKLEDLAAHLKSNSLCALGQTAPN 507

Query: 400 PIQGLIKNFR 409
           P+   ++ F+
Sbjct: 508 PVLSTLRYFK 517


>gi|163785517|ref|ZP_02180100.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879215|gb|EDP73136.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1]
          Length = 403

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 168/381 (44%), Positives = 228/381 (59%), Gaps = 18/381 (4%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + +  + G +  + K L K   + II+ V+ S LRGRGGAGF TG KW F+  V + +P 
Sbjct: 34  IEEYETTGGYSALKKALNKFTPEEIIDLVEESTLRGRGGAGFPTGRKWRFV--VSNPKPR 91

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADESEPGT KDR I+  +PH LIEG +I+++AIGA   FIY+RGE+      L+ 
Sbjct: 92  YLICNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAEKGFIYIRGEYPAGYMILEN 151

Query: 139 AVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A++E Y  G LG N  LG D   D+ V+ GAGAYICGEETAL+ESLEGK+G PRLKPP+P
Sbjct: 152 AINEAYERGYLGKNI-LGSDFSFDLYVYRGAGAYICGEETALIESLEGKRGHPRLKPPYP 210

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
             VGL+G PT VNNVE+++ +P I+     ++   G     G KLF +SG V  P   E 
Sbjct: 211 PQVGLFGRPTVVNNVETLSNIPIIITY-EQYFMNIGPAGYYGPKLFPVSGRVKRPGVYES 269

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +M IT  ELIE   G +        AV  G   V       +    MDY      G G G
Sbjct: 270 TMDITLYELIEMAGGAV----GKPKAVFAGALGVYHKNEFDIP---MDYS---PRGFG-G 318

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T   IV++ +  II ++  ++ F+ HESCG+CTPCR GT     ++++  +G A +++I 
Sbjct: 319 TGTTIVLNENDCIIDSLIVITNFFHHESCGKCTPCRVGTYEQFNIIKKFQEGTATEKDIQ 378

Query: 377 LLYEVSKNIEGRTICALGDAA 397
           LL  + KNI   +IC LG +A
Sbjct: 379 LLEHLGKNIPVGSICGLGYSA 399


>gi|251772862|gb|EES53421.1| NADH dehydrogenase (Quinone), subunit F [Leptospirillum
           ferrodiazotrophum]
          Length = 624

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 173/423 (40%), Positives = 250/423 (59%), Gaps = 7/423 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60
           L ++  +FT L   +   +    S G +  + +I+  K R  I+NE+++SGL GRGG  F
Sbjct: 172 LVNEPVVFTGLKAKETLWIDRYESAGGYAMLREIMAAKDRTRIMNEIESSGLSGRGGGAF 231

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               K   + K  + +PHY+V NADE EPGT KDR IM  +PH+ IEG ++AS+AI A  
Sbjct: 232 PMAPKLKNVMK--NPKPHYVVANADEGEPGTFKDRYIMERDPHSFIEGMILASYAIDADA 289

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    + L  A+DE  A G LG N    G+D DI ++ G GAYICGE+++LL
Sbjct: 290 GYIYLREEYPHSYQILLKALDEARAKGYLGKNILGTGWDYDIRIYRGGGAYICGEDSSLL 349

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G PR KPP  +++GL+  PT VNNVE+ A +P IL+ G +WY   G E + GT
Sbjct: 350 NSLEGKRGTPRNKPPRLSDIGLWKKPTDVNNVETFAAIPRILKEGGAWYKSLGDEKSAGT 409

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SG++  P   E  +  T   LIE+  GG+  G     AV+P GS+   L   QM 
Sbjct: 410 KLFCLSGNIRRPGIYEVPLGATLRHLIEELGGGVPEG-RKFKAVLPAGSASSMLYPVQMD 468

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A +DY  +K  G+ LG A++IVMD S  ++   + +S FY HESCGQCTPCR+GT  + 
Sbjct: 469 MA-LDYPTVKAAGAFLGAASLIVMDDSVCMVDLAFWMSGFYHHESCGQCTPCRDGTEDIH 527

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            V++++V G  +   ++ +  + + +   +IC LG +A       I++F     E I   
Sbjct: 528 EVLQKIVMGEGELSHLEFIKSLGEYMRTASICGLGTSAPNIPISSIEHFEEEWREHILD- 586

Query: 420 HRC 422
           HRC
Sbjct: 587 HRC 589


>gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 610

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 151/395 (38%), Positives = 240/395 (60%), Gaps = 9/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ + ++R  +  + K L     + +I E+K SGLRGRGGAGF TG+KW    +  SD  
Sbjct: 133 SIEEYIARDGYFALHKALTTMTPEDVIKEIKDSGLRGRGGAGFPTGLKWELARQQKSDI- 191

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ NADE +PG   DR ++  +PH+++E   IA +AIGA   F+YVR E+    E L 
Sbjct: 192 KYMICNADEGDPGAFMDRSVLEGDPHSIVEAMTIAGYAIGAQKGFVYVRAEYPLAIERLG 251

Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            A++  +  G LG N   +   +D++I +  GAGA++CGEETAL+ S+EGK+GQPR+KPP
Sbjct: 252 RAIETAHEYGFLGENILGTNFSFDIEIRI--GAGAFVCGEETALMHSIEGKRGQPRVKPP 309

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FP   GL+G P+ +NNVE++++VP I+ +GASW+  +G E + GTK+F+++G +     V
Sbjct: 310 FPVQKGLWGKPSVINNVETLSLVPPIILKGASWFRQYGTEKSPGTKVFALAGKIKNTGLV 369

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M IT  EL+ +  GG   G   + AV  GG S   +P+ +     +DY+ L ++G+ 
Sbjct: 370 EVPMGITLRELLYEIGGGHPQG-KQIKAVQTGGPSGGVIPS-EFFDTPVDYESLGKLGAI 427

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  +IV+D    ++        F   ESCG+CTPCREGT  M  +++++ KG     +
Sbjct: 428 MGSGGMIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTKVMYDLLDKITKGEGTMED 487

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           I+ L  +++ I+  ++C LG  A  P+   ++ +R
Sbjct: 488 IEKLERLAQVIKDSSLCGLGQTAPNPVLSTLRYYR 522


>gi|296132262|ref|YP_003639509.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296030840|gb|ADG81608.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 619

 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 157/400 (39%), Positives = 243/400 (60%), Gaps = 5/400 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ + ++ G ++ ++K+L    +  +I EVK SGLRGRGG GF TG+KW F  K   ++ 
Sbjct: 152 SIEEYIAYGGYEALEKVLSSMSQTQVIEEVKKSGLRGRGGGGFPTGLKWEFAYKSPGEK- 210

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ NADE +PG   DR ++  +PH ++EG  I  +AIGA   +IYVR E+    + L+
Sbjct: 211 KYVICNADEGDPGAFMDRSVLEGDPHAVLEGMAICGYAIGADEGYIYVRAEYPLAIKRLE 270

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ +   +GLLG N    G++  + +  GAGA++CGEETAL+ S+EGK+G PR++PPFP
Sbjct: 271 NAIAQAEEAGLLGENILGSGFNFKLRIKAGAGAFVCGEETALINSIEGKRGMPRVRPPFP 330

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  PT  NNVE+ A +P I+R+GA W++G G E ++G+K+F+++G VN     E 
Sbjct: 331 AQSGLWNKPTNNNNVETYANIPGIIRKGADWFAGMGTEKSKGSKVFALTGKVNRTGLAEV 390

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            + IT  E+I    GGI+       AV  GG S  C+P   +   + DYD L  +G+ +G
Sbjct: 391 PIGITIREIIFDIAGGIQNN-KKFKAVQIGGPSGGCIPEEYLDTPV-DYDSLTALGAMMG 448

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++VMD +T ++        F + ESCG+CTPCREGT  M+ ++ R+  G  +  +ID
Sbjct: 449 SGGLVVMDETTCMVDVARFFLNFTQKESCGKCTPCREGTKRMLEILNRICDGKGKPEDID 508

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            L  +S  I+   +C LG +A  P+   ++ FR   E+ I
Sbjct: 509 TLERLSNVIKSTALCGLGQSAPNPVLATLRYFRNEYEDHI 548


>gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
 gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
          Length = 624

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 152/393 (38%), Positives = 229/393 (58%), Gaps = 5/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D M RG + +  K+L++G  DW++  +K SGLRGRGGAGF TG+KW        DR 
Sbjct: 158 SIDDYMGRGGYLSFIKVLKEGNPDWVVKTIKDSGLRGRGGAGFPTGVKWEITKNSKGDR- 216

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            ++V N DE +PG   +R ++  +PH ++EG +IA++ IGA   + Y+R E+    E  +
Sbjct: 217 KFVVCNGDEGDPGAFMNRTLLERDPHAVLEGMLIAAYTIGAQKGYAYIRAEYPVAVEMFR 276

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+++    GL+G N    G+  DI +  GAGA++CGEETALL S+EGK+G PR +PP+P
Sbjct: 277 KAIEDAKRLGLVGENILGTGFSFDIEIKEGAGAFVCGEETALLASIEGKRGVPRPRPPYP 336

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT +NNVE+ A VP I+R GA  Y   G  N+ GTK+FS++G V     +E 
Sbjct: 337 AQVGLWGYPTLINNVETYANVPKIIRDGAENYRKRGVPNSPGTKMFSVTGPVRLTGIIEV 396

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  +++   CGG+    +   AV  GG S  CL    +    +DYD LK  G+ +G
Sbjct: 397 EFGTTLRQIVYDICGGLTDD-NEFKAVQIGGPSGACLSEAFL-DLPLDYDSLKSAGAMVG 454

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++V+ +   +++       F K ESCG+C PCREG     R++ER  +G     +++
Sbjct: 455 SGGIVVLSKKACMVEVARFFLDFTKRESCGKCIPCREGLMQSYRILERFTQGKGTYEDLE 514

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  ++  I+  + C LG  A  PI   ++ FR
Sbjct: 515 NLEFLAGLIKTASACGLGQTAPNPILSTLRLFR 547


>gi|57641548|ref|YP_184026.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
 gi|57159872|dbj|BAD85802.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
          Length = 600

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 155/417 (37%), Positives = 245/417 (58%), Gaps = 8/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N   +  +++ + +  G ++ + K L+   + II  +  SGLRGRGGAGF TG+KW 
Sbjct: 119 VLENSGYIDPENIDEYIQAGGYEALKKALKMDPEEIIEIITKSGLRGRGGAGFPTGLKWK 178

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F  +   D   Y++ NADE +PG   DR+++  +PH +IEG +I ++AIGA   FIYVR 
Sbjct: 179 FTRQAPGDE-KYVICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATKGFIYVRA 237

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+      L+ A+ +    G LG N    G+  DI++  GAGA++CGEETAL+ S+EGK+
Sbjct: 238 EYPLAIRRLKIALKQARERGFLGENILGSGFSFDIVIKEGAGAFVCGEETALIASIEGKR 297

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PR +PP+PA  GL+G PT +NNVE+ A VP I+R G   Y+  G E ++GTK+F++SG
Sbjct: 298 GMPRPRPPYPAQKGLWGKPTNINNVETWANVPWIIRHGWEAYASLGTEKSKGTKVFALSG 357

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            + +   VE  M IT  E++ +  GG + G   + AV  GG S  C+P  ++    +DY+
Sbjct: 358 KIKHGGNVEVPMGITLREILYEIGGGTKTG-KRIKAVQLGGPSGGCIPE-ELFDTPVDYE 415

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   G+ +G+  ++VMD  T ++        F   ESCG+CT CR GT  M  +++R  
Sbjct: 416 SVNATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRIGTKRMWEILDRFT 475

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH-RC 422
           +G A + +++ L  ++  ++  ++C LG  A  P+   ++ FR   EE I+  + RC
Sbjct: 476 RGEATEEDLEKLERLAYQVKAGSLCGLGQTAPNPVLTTLRYFR---EEYIEHINGRC 529


>gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 639

 Score =  285 bits (729), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 153/373 (41%), Positives = 224/373 (60%), Gaps = 5/373 (1%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   D II E+K SGLRGRGGAGF TG+KW F  K  SD   Y++ NADE +PG   +R+
Sbjct: 184 EMNPDEIIEEIKKSGLRGRGGAGFPTGLKWEFAKKEKSDV-KYVICNADEGDPGAYMNRN 242

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KL 155
            M  +PH +IEG +I  + IGA+   IYVR E+    E LQ A+D+  + G LG +    
Sbjct: 243 EMESDPHMIIEGMIICGYTIGANEGIIYVRAEYPLAIERLQKAIDDARSLGFLGKDILGT 302

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G+D DI +  GAGA++CGEETAL+ S+EGK G+P+ +PPFPA  GL+G PT +NNVE+ +
Sbjct: 303 GFDFDITIVKGAGAFVCGEETALIASIEGKAGRPKPRPPFPAQKGLWGKPTNINNVETWS 362

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +P I+ +G  W+S FG E + GTK+FS+ G V     VE  +     ++I  +  G   
Sbjct: 363 NIPIIVEKGGDWFSKFGTEKSTGTKVFSLVGKVENVGLVEVELGTPVRKII--YDIGGGT 420

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               + AV  GG S  C+P+ ++    +DY+ L E+GS +G+  V+VMD  T ++     
Sbjct: 421 KKGKIKAVQTGGPSGGCIPS-KLFDTPVDYEHLAEVGSIMGSGGVVVMDEDTCMVDTAKF 479

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
              F   ESCG+C PCREG   M  +++ + KG A   +++ L E+S+ ++  ++C LG 
Sbjct: 480 FLDFSVDESCGKCVPCREGLTHMYEILDNITKGKASIEDVETLKELSETVKTTSLCGLGQ 539

Query: 396 AAAWPIQGLIKNF 408
            A  P+   ++ F
Sbjct: 540 TAPNPVLTTLEYF 552


>gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
 gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
          Length = 589

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 244/412 (59%), Gaps = 7/412 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
           +L +Q RI     G+   + + D  +R  +  + K L+  R+ II E+K SGLRGRGGAG
Sbjct: 104 LLANQQRIVLRNCGIIDPECIEDYEAREGYQALKKALKMERNAIIEEIKKSGLRGRGGAG 163

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW       S +  Y++ NADE +PG   DR  +  +PH++IEG +I ++AIGA+
Sbjct: 164 FPTGLKWQLCAFENSSK-KYVICNADEGDPGAFMDRSTLEGDPHSVIEGMIIGAYAIGAN 222

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETA 177
             +IY R E+    E L+ A+      G LG N  LG      +H   GAGA++CGEETA
Sbjct: 223 EGYIYCRAEYPMALEHLKTAISAAEKKGYLGKNI-LGSSFSFALHIKEGAGAFVCGEETA 281

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++S+EGK+G P L+PP+PA  GL+G PT +NNVE+ A +P I+  GA  +  +G E + 
Sbjct: 282 LMQSIEGKRGMPTLRPPYPAVKGLWGKPTNINNVETWANIPWIIMHGAQEFRKYGTEKSP 341

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M I   ++I K  GG++   +   AV  GG S  C+PA +
Sbjct: 342 GTKVFALAGKIAGSGLIEVPMGIPLKDIIYKVGGGMKTA-NPFKAVQMGGPSGGCIPAEK 400

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I+DYD +   G+ +G+  ++VMD  T ++        F ++ESCG+CT CR GT  
Sbjct: 401 LE-TIVDYDSITATGAIMGSGGMVVMDSGTCMVDVARFFLNFTQNESCGKCTFCRIGTKR 459

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           M+ ++ R+ +G  + +++D L E+++N+   ++C LG  A  P+   +  FR
Sbjct: 460 MLEILTRITEGKGELQDLDNLEELAENVIKGSLCGLGQTAPDPVLTTLHYFR 511


>gi|326577021|gb|EGE26916.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis
           101P30B1]
          Length = 472

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77
           +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM P     R 
Sbjct: 59  TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE++   + LQ
Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++EC A+ LLG +  LG  ++  + VH GAG YICGEETAL+  LEG++  PR KPPF
Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKPPF 235

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251
           P   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +SG V   
Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDA 295

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310
              E     T  ELIE   GG++ G  +L A +PGG+S   L A  +    +MD+D + +
Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++ +  G A
Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           Q  +ID L E+++++  G+T CA    A  P+   +K FR   E++++ 
Sbjct: 414 QADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462


>gi|225621401|ref|YP_002722660.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kDa) subunit
           [Brachyspira hyodysenteriae WA1]
 gi|225216222|gb|ACN84956.1| DH:ubiquinone oxidoreductase, DH-binding (51 kDa) subunit
           [Brachyspira hyodysenteriae WA1]
          Length = 562

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/378 (40%), Positives = 229/378 (60%), Gaps = 10/378 (2%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E   D +INE+  SGLRGRGGAGF T  KWSF  +V SD+  Y+V NADE +PG   D
Sbjct: 174 LFEMTPDDVINEMHTSGLRGRGGAGFPTWKKWSFTKEVKSDQ-KYIVCNADEGDPGAYMD 232

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152
           R I+  +PH++IE   IA + IGA+  ++Y+R E+    E ++ A+ + Y  GLLG    
Sbjct: 233 RSILEGDPHSVIEAMTIAGYTIGANKGYLYIRAEYGLAVERVRIALKQAYDYGLLGEKIL 292

Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            S   +D+DI +  GAGA++CGEETALL S+EG +G PR +PPFPA  GL+  PT +NNV
Sbjct: 293 GSDFSFDLDIRL--GAGAFVCGEETALLASIEGNRGTPRPRPPFPAIKGLFEKPTVINNV 350

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E+ A V  I+  G  W++  G EN+ GTK+F+++G+VN    VE  M  T  E++    G
Sbjct: 351 ETFANVTAIINNGGDWFASIGTENSTGTKVFALTGNVNVSGLVEVPMGTTIREIVFDIGG 410

Query: 272 GIRGGWDNLL-AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GI    D  +  V  GG S   LP   + G  +D+D L ++GS +G+  +IV+D  ++++
Sbjct: 411 GIPN--DKFVKGVQTGGPSGGILPE-SLFGTRIDFDNLVKLGSMMGSGGMIVIDEDSNMV 467

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
                   F   ESCG+C PCR G   M++++E+  K  A++ +I  L +++  +   ++
Sbjct: 468 DFAKFYLGFCVDESCGKCVPCRVGGMQMLKILEKFTKKRAKEDDIQKLRDIALTMRKASL 527

Query: 391 CALGDAAAWPIQGLIKNF 408
           CALG  AA P+   +K+F
Sbjct: 528 CALGSTAANPVMSTLKHF 545


>gi|326561571|gb|EGE11912.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis
           46P47B1]
 gi|326567652|gb|EGE17760.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis
           12P80B1]
          Length = 472

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77
           +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM P     R 
Sbjct: 59  TLADYETLDGFVGLKNALSKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE++   + LQ
Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++EC A+ LLG +  LG  ++  + VH GAG YICGEETAL+  LEG++  PR KPPF
Sbjct: 177 NAINECIANRLLG-DGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKPPF 235

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251
           P   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +SG V   
Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDA 295

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310
              E     T  ELIE   GG++ G  +L A +PGG+S   L A  +    +MD+D + +
Sbjct: 296 GLWELPFGHTARELIE-LAGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++ +  G A
Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413

Query: 371 QKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           Q  +ID L E+++++  G+T CA    A  P+   +K FR   E++++ 
Sbjct: 414 QADDIDKLSELTRDLWIGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462


>gi|226944922|ref|YP_002799995.1| NADH-quinone oxidoreductase, F subunit [Azotobacter vinelandii DJ]
 gi|226719849|gb|ACO79020.1| NADH-quinone oxidoreductase, F subunit [Azotobacter vinelandii DJ]
          Length = 449

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/375 (42%), Positives = 222/375 (59%), Gaps = 6/375 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+  VK SGL+GRGGAGF+TG+KW  MP   S    YL+ NADE EP T KDR +M   P
Sbjct: 58  IVAIVKDSGLKGRGGAGFATGIKWGLMPADDSIDIRYLLCNADEMEPNTWKDRLLMEQLP 117

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG +I++ A+ A+  +I++RGE+I    +L  A+ E  A+GLLG N    G+D ++
Sbjct: 118 HQLIEGMLISARALKAYRGYIFLRGEYIDAARNLNRAIAEAKAAGLLGKNILGSGFDFEL 177

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+++ VP I+
Sbjct: 178 FVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLSNVPAIV 237

Query: 222 RRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             G  WY    R    + GTKL   SG V  P   E    IT  EL E + GG+R G+  
Sbjct: 238 GNGVDWYKSLARPGSEDMGTKLMGFSGKVKNPGLWELPFGITARELFEDYAGGMRDGY-R 296

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L     GG+    L    +  A M   G+ ++G+ +GT   + +D S +++  +  L  F
Sbjct: 297 LKCWQSGGAGTGFLLPEHLD-AQMYAGGIGKVGTRMGTGLALAVDDSINMVSLLRNLEEF 355

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W ++++  L +G  Q  +++ L ++ + +  G+T CA    A 
Sbjct: 356 FARESCGWCTPCRDGLPWSVKLLSALERGEGQPGDLETLEQLVRFLGPGKTFCAHAPGAV 415

Query: 399 WPIQGLIKNFRPLIE 413
            P+   +K FR   E
Sbjct: 416 EPLGSALKYFRQEFE 430


>gi|77918523|ref|YP_356338.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Pelobacter carbinolicus DSM 2380]
 gi|77544606|gb|ABA88168.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 571

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 157/412 (38%), Positives = 234/412 (56%), Gaps = 6/412 (1%)

Query: 7   RIFTNLYGLQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           R+  N   +    + D + R G+   +  + E   + +INE   SGLRGRGGAGF  G+K
Sbjct: 156 RVMRNRGLIDPAKIKDYIGRDGYQGAIKALTEMSSEEVINEAIGSGLRGRGGAGFPIGLK 215

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           W F     +D   Y++ NADE +PG   DR++M  +PH++IEG +I + AIGAH  +IY 
Sbjct: 216 WKFAAAEKNDI-KYILCNADEGDPGAFMDRNVMESDPHSIIEGLIIGAKAIGAHQGYIYC 274

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           R E+    E+L  A+++  A  LLG N    G+  DI V+ GAGA++CGEETAL+ S+EG
Sbjct: 275 RAEYPLAIETLNKAINQARALDLLGENILGTGFSFDISVYEGAGAFVCGEETALMRSIEG 334

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+G PR KPPFPA  GL+  PT +NNVE+++ +P I+ +GA WY   G E + GTK+FSI
Sbjct: 335 KRGNPRPKPPFPAKAGLFEKPTVLNNVETLSNIPQIIVKGADWYKEIGTEKSPGTKIFSI 394

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G +     VE  +  T D ++ +   GI     NL AV  GG S  C+P   M  A+ D
Sbjct: 395 TGDIENVGCVEVPIGTTVDTIVNQI--GIVSPDKNLKAVQLGGPSGGCIPKDYMHVAV-D 451

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           Y+ L+E G+ +G+  +I M      +        F + E+CG+C P REGT  M++++E+
Sbjct: 452 YETLQEYGAIMGSGGLIAMSDDKSGVDIAKFFIDFCQDEACGKCLPGREGTKQMLQILEK 511

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +  G     +I+ L  +   I    +CAL   A  P+   ++ F    +E +
Sbjct: 512 IDSGEGSPDDIETLKVLCGVIRKTALCALCKTAVNPVLSTLRYFPEEYQEAV 563


>gi|326574011|gb|EGE23960.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis CO72]
          Length = 472

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77
           +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM P     R 
Sbjct: 59  TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE++   + LQ
Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++EC A+ LLG +  LG  ++  + +H GAG YICGEETAL+  LEG++  PR KPPF
Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRANPRTKPPF 235

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251
           P   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +SG V   
Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDA 295

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310
              E     T  ELIE   GG++ G  +L A +PGG+S   L A  +    +MD+D + +
Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++ +  G A
Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           Q  +ID L E+++++  G+T CA    A  P+   +K FR   E++++ 
Sbjct: 414 QADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462


>gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2]
 gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2]
          Length = 595

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 158/397 (39%), Positives = 232/397 (58%), Gaps = 5/397 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G++     + E   D II E+ ASGLRGRGGAGF  GMKW F  +   D+  +++ NADE
Sbjct: 139 GYFALAKALNEMTPDNIIEEMMASGLRGRGGAGFPAGMKWKFAKQAEGDK-KFVLCNADE 197

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR ++  +PH ++EG  IA+ AI AH  +IY R E+    + L  A+ +    
Sbjct: 198 GDPGAFMDRSLLESDPHAILEGMTIAAKAINAHKGYIYCRSEYPLAIKRLGIAIAQAKDY 257

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           GLLG +    G++ DI V+ GAGA++CGEETAL+ S+EGK+G PR +PPFPA+ GL+  P
Sbjct: 258 GLLGEDILGSGFNFDIEVYQGAGAFVCGEETALMRSIEGKRGMPRPRPPFPAHKGLWEKP 317

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T +NNVE++  VP I+ +G  WY+  G E ++GTK+F++SG V     VE  M  T   L
Sbjct: 318 TILNNVETLVNVPQIILKGGEWYASVGTEKSKGTKVFALSGDVANIGLVEIPMGTTLRTL 377

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           +    GG+        AV  GG S  C+P   +   I DY+ + ++G+ +G+   IVMD 
Sbjct: 378 VYDIGGGVPNKR-KFKAVQLGGPSGGCVPEEYLDTPI-DYEEIVKVGAIMGSGGAIVMDN 435

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
            T ++        F + ESCG+CTPCREGT  M+ ++E + KG  Q  +I+ L  ++  I
Sbjct: 436 HTCMVDMARYFMDFIQDESCGKCTPCREGTKQMLEILEAICKGKGQSGDIERLETLAHVI 495

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
              ++C LG  A  P+   ++ FR   E  I++  RC
Sbjct: 496 RRTSLCGLGQTAPNPVLSTLRYFRDEYEAHIEE-KRC 531


>gi|326577453|gb|EGE27337.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis O35E]
          Length = 472

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77
           +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM P     R 
Sbjct: 59  TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE++   + LQ
Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++EC A+ LLG +  LG  ++  + +H GAG YICGEETAL+  LEG++  PR KPPF
Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRANPRTKPPF 235

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251
           P   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +SG V   
Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDA 295

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310
              E     T  ELIE   GG++ G  +L A +PGG+S   L A  +    +MD+D + +
Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++ +  G A
Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           Q  +ID L E+++++  G+T CA    A  P+   +K FR   E++++ 
Sbjct: 414 QADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462


>gi|307131810|ref|YP_003883826.1| NADH:ubiquinone oxidoreductase subunit F [Dickeya dadantii 3937]
 gi|306529339|gb|ADM99269.1| NADH:ubiquinone oxidoreductase, chain F [Dickeya dadantii 3937]
          Length = 449

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 167/402 (41%), Positives = 235/402 (58%), Gaps = 7/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  +    K L    +D ++  VK +GLRGRGGAGFSTG+KWS MPK  S    
Sbjct: 27  LDEYRSKNGYAGAQKALTGMAQDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDESMNIR 86

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE++    +L+ 
Sbjct: 87  YLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAANLRR 146

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +GLLG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 147 AIAEATEAGLLGKNIMGTGFNFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 206

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
           + G +G PT VNNVE++  VP I+  G  WY G   G+  + GTKL   SG V  P   E
Sbjct: 207 SAGAWGKPTCVNNVETLCNVPAIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNPGLWE 266

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + GS L
Sbjct: 267 LPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKAGSRL 324

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L +G  Q  +I
Sbjct: 325 GTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDI 384

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + L ++ + +  G T CA    A  P+Q  IK FR   E  I
Sbjct: 385 ETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGI 426


>gi|296112936|ref|YP_003626874.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis RH4]
 gi|295920630|gb|ADG60981.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis RH4]
          Length = 472

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77
           +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM P     R 
Sbjct: 59  TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE++   + LQ
Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++EC A+ LLG +  LG  ++  + VH GAG YICGEETAL+  LEG++  PR KPPF
Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKPPF 235

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251
           P   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +SG V   
Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLDLPKAKGKSTTPGTKIMGVSGRVKDA 295

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310
              E     T  ELIE   GG++ G  +L A +PGG+S   L A  +    +MD+D + +
Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++ +  G A
Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           Q  +ID L E+++++  G+T CA    A  P+   +K FR   E++++ 
Sbjct: 414 QADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462


>gi|39997815|ref|NP_953766.1| NAD-reducing hydrogenase subunit alpha [Geobacter sulfurreducens
           PCA]
 gi|39984707|gb|AAR36093.1| NAD-reducing hydrogenase, alpha subunit [Geobacter sulfurreducens
           PCA]
 gi|298506753|gb|ADI85476.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit
           [Geobacter sulfurreducens KN400]
          Length = 570

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 155/419 (36%), Positives = 241/419 (57%), Gaps = 10/419 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + + ++ G +D +   L E   + +  E+ ASGLRGRGGAG+  G+KW
Sbjct: 127 VLANCGSIDPERIEEYVATGGYDALAHALHEMTPEDVCREISASGLRGRGGAGYPAGVKW 186

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           +   K   +R  Y+V N DE +PG   DR +M  +PH ++EG  IA +AIGA   +IYVR
Sbjct: 187 NLARKAPGER-KYVVANGDEGDPGAYMDRSVMESDPHRILEGMAIAGYAIGADQGYIYVR 245

Query: 127 GEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           GE+      L+AA+ +    GLLGS    S   + +DI    GAGA++CGEET+L+ S+ 
Sbjct: 246 GEYYLAGRRLEAAIRDAERKGLLGSRVLGSNFSFRIDI--RTGAGAFVCGEETSLMASIM 303

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G++GQP  +PP+PA  GL+GCPT +NNVE++A VP I+ RGA+WY+G G   + GTK+++
Sbjct: 304 GRRGQPWHRPPYPAQRGLWGCPTLINNVETLATVPAIIGRGATWYAGIGSTRSPGTKVYA 363

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           ++G V     +E  M  T  E++    GGI GG     A   GG S  C+PA  +    +
Sbjct: 364 LAGQVETAGLIEVPMGTTLREVVFDIGGGIPGG-KRFKAAQSGGPSGGCIPAEHL-DTPL 421

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DY+ ++ +G+ +G+  +I+MD ++ +         F + ESCG+C PCR G+  M R++ 
Sbjct: 422 DYESMERIGTIMGSGGLIIMDETSCMPDVASFFLDFCRDESCGKCIPCRVGSMEMHRLLR 481

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           R+  G A   ++  L E+   +   ++C LG  A  P+   ++ FR   E  I +  RC
Sbjct: 482 RITSGTAWPDDLRRLEELCDLMGATSLCGLGQTAPNPVVSTLRYFRHEYEAHIRE-RRC 539


>gi|326567951|gb|EGE18048.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC1]
          Length = 472

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77
           +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM P     R 
Sbjct: 59  TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE++   + LQ
Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQ 176

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++EC A+ LLG +  LG  ++  + VH GAG YICGEETAL+  LEG++  PR KPPF
Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKPPF 235

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251
           P   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +SG V   
Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLDLPKAKGKSTTPGTKIMGVSGRVKDA 295

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310
              E     T  ELIE   GG++ G  +L A +PGG+S   L A  +    +MD+D + +
Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++ +  G A
Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413

Query: 371 QKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           Q  +ID L E+++++  G+T CA    A  P+   +K FR   E++++ 
Sbjct: 414 QADDIDKLSELTRDLWIGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462


>gi|171058146|ref|YP_001790495.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170775591|gb|ACB33730.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Leptothrix cholodnii SP-6]
          Length = 627

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 159/386 (41%), Positives = 220/386 (56%), Gaps = 18/386 (4%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF---MPKVCSDRPHYLVVNADESEPGTC 92
           L +G   +++EVK S LRGRGGAG+ TG KW      P    D  HY+V NADE EPGT 
Sbjct: 220 LARGWQALLDEVKQSNLRGRGGAGYQTGRKWELCREAPGNTPDNTHYVVCNADEGEPGTF 279

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS- 151
           KDR ++     +L EG  IA FAIGA   F+Y+RGE+    E LQA +     + LLG+ 
Sbjct: 280 KDRVLLSRYADSLFEGMTIAGFAIGARQGFVYLRGEYRYLLEPLQAVLQRRREANLLGAA 339

Query: 152 -NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
              + G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PP+P   G    PT VNN
Sbjct: 340 IQGREGFDFDIDIHVGAGAYVCGEESALIESLEGKRGTPRIRPPYPVEHGYLDEPTIVNN 399

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270
           VE+   V  I   GA+W++G G   + GTK+ S+SG    P   E         ++E  C
Sbjct: 400 VETYCAVTHIAVHGAAWWAGIGTPKSTGTKIHSVSGDCERPGIYEYPYGTRIGRILED-C 458

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           G       +  AV  GG S  CL A +  G  + ++ +   G      A +V DRS D+ 
Sbjct: 459 GA-----RDTQAVQVGGPSGVCLSAFEF-GRRIAFEDVPTAG------AFMVFDRSRDMF 506

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
           +     + F+ HESCG CTPCR GT  +++ M++L  G   + ++D+L+E+ K +   T 
Sbjct: 507 EVARNFAQFFAHESCGFCTPCRVGTALVVKRMDKLAAGQGSRHDVDVLFELDKLMHTATH 566

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERI 416
           C LG AA  P++  I  FRP  E+R+
Sbjct: 567 CGLGGAACNPLRDTIAKFRPAYEQRL 592


>gi|78224540|ref|YP_386287.1| NADH dehydrogenase I subunit F [Geobacter metallireducens GS-15]
 gi|78195795|gb|ABB33562.1| NADH dehydrogenase I, F subunit [Geobacter metallireducens GS-15]
          Length = 591

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 166/420 (39%), Positives = 245/420 (58%), Gaps = 12/420 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T    +  +SL   ++   +  ++K + E     +I+EVK +GLRGRGG GF TGMKW
Sbjct: 115 VMTGCGQIDPESLDAYLAEDGFKAIEKCVKEMTPAAVIDEVKKAGLRGRGGGGFPTGMKW 174

Query: 67  SFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           SF    C+  P    YL+ NADE +PG   DR I+  +P+ +IEG +IA++AIG    ++
Sbjct: 175 SF----CAATPGKLKYLICNADEGDPGAFMDRSILEGDPYCIIEGMMIAAYAIGCSKGYV 230

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    E LQ A+D C   G LG N +  G+D D+I+  GAGA++CGEETAL+ S+
Sbjct: 231 YVRAEYPLAIERLQKALDVCREKGYLGHNIQGWGFDFDLIIKKGAGAFVCGEETALMASI 290

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++G PR +PPFPA  GL+  PT +NNVE+ A V  I+ +GA WY+  G +  +GTK+F
Sbjct: 291 EGERGMPRPRPPFPAVKGLWAKPTNINNVETFANVRHIINKGAEWYASLGTDTTKGTKIF 350

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G V +   VE    +T  ++I   CGGI        AV  GG S  C+P  ++    
Sbjct: 351 AVTGKVKHTGLVEVPAGMTVRDVIYNVCGGIANN-RKFKAVQAGGPSGGCIPP-EVLDTP 408

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DYD L + G+ +G+  ++VMD +T ++        F + ESCG+C PCR G   M+ ++
Sbjct: 409 VDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLSFTRMESCGKCVPCRIGLKVMLDIL 468

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           ER+  G  Q  +I+ L E+   I+  ++C LG  A  PI   I+ FR   E  I    RC
Sbjct: 469 ERITAGRGQAGDIETLLEMGSTIKKASLCGLGQTAPNPILSTIRYFREEYEAHITD-KRC 527


>gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
 gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
          Length = 593

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 157/413 (38%), Positives = 245/413 (59%), Gaps = 8/413 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +++++ ++R  +  ++K L E   + I++E+K SGLRGRGGAGF TG+KW
Sbjct: 116 VLRNCGVINPENINEYIARDGYLALEKALFELTPEQIVDEIKKSGLRGRGGAGFPTGLKW 175

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               K   D   Y+V NADE +PG   DR  +  +PH++IE  +I   AIGAH  F+Y+R
Sbjct: 176 EAGMKASGDV-KYVVCNADEGDPGAYMDRSTIEGDPHSIIEAMIICGKAIGAHQGFVYIR 234

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + L+ A+ + + +GLLG N    G+D DI +  GAGA++CGEETALL S+EG+
Sbjct: 235 AEYPLAIDRLRIAMAQAHENGLLGKNILGSGFDFDIEIRLGAGAFVCGEETALLRSIEGQ 294

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G P  KPPFPA  GL+G PT +NNVE+ A +P IL +GA W++  G ++++GTK+F+++
Sbjct: 295 RGMPTPKPPFPAQCGLWGKPTVINNVETWANIPVILTKGADWFNKIGTDDSKGTKVFALT 354

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    VE  M  T  E+I +  GGI+ G      V  GG S   +    +   I D+
Sbjct: 355 GKVNNSGLVEVPMGTTLREIIFEIGGGIKNG-KKFKGVQTGGPSGGIITEEHLDTPI-DF 412

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
             L ++GS +G+  +IVMD    ++        F   ESCG+C+PCR GT  M  ++E++
Sbjct: 413 GALIKLGSMMGSGGMIVMDEDDCVVDVAKFYMEFCVDESCGKCSPCRIGTRQMYTILEKI 472

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +G  +  ++  L ++ + ++  ++CALG +A  P    I+ F    +E ID 
Sbjct: 473 SRGNGEMDDLQKLKDIGQAMKTSSLCALGQSAPNPTLSTIRKFE---QEYIDH 522


>gi|149924755|ref|ZP_01913100.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1]
 gi|149814370|gb|EDM73967.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1]
          Length = 503

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 165/376 (43%), Positives = 234/376 (62%), Gaps = 17/376 (4%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
           DK  ++G DWII ++K SGL+GRGGAGF   +KW  + +  ++   Y+VVNADE EPGT 
Sbjct: 138 DKARDEGPDWIIEQLKTSGLQGRGGAGFPAHIKWHAV-RTQAELTRYVVVNADEGEPGTF 196

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
           KDR+IM   PH +IEG  IA++  GA  AFIYVRGEF     +L+AA+ E        + 
Sbjct: 197 KDREIMLRRPHRMIEGMAIAAWVAGAAKAFIYVRGEFRDCIRALEAAIAE--------AG 248

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
            +L + +DI +  G GAYICGEETALLE++EGK+G PRLKPP+P   GL+G PT +NNVE
Sbjct: 249 ERLDW-LDIEIVEGHGAYICGEETALLEAIEGKRGMPRLKPPYPTEKGLWGKPTLMNNVE 307

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           ++A VP IL RG  W+   G+    G+KL+ ISGHV  P   E  + ++ DEL+E   GG
Sbjct: 308 TLACVPEILSRGGEWFKALGK-TEAGSKLYCISGHVGRPGIYELPLGVSLDELVEA-AGG 365

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
             G      A  PGG+S   LP   +RG  +D+ GL ++GS LG+A V+V++ + D+  A
Sbjct: 366 YVG---TPKAFSPGGASSGFLPM-DLRGEPLDFGGLAKLGSMLGSAGVVVLNDTVDMAVA 421

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
                +F++ ESCGQC PCR G     + +++ +   A +  +  + EV+  ++  +IC 
Sbjct: 422 ARWQQIFFEDESCGQCAPCRIGCRVQRQAIDKFLDARAPE-SLGHVEEVAWEMDAGSICG 480

Query: 393 LGDAAAWPIQGLIKNF 408
           LG  A+ P+Q  +K F
Sbjct: 481 LGMVASLPLQSAMKYF 496


>gi|225850513|ref|YP_002730747.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit
           f) (ndh-1 subunit f) [Persephonella marina EX-H1]
 gi|225646692|gb|ACO04878.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit
           f) (ndh-1 subunit f) [Persephonella marina EX-H1]
          Length = 432

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 167/408 (40%), Positives = 240/408 (58%), Gaps = 16/408 (3%)

Query: 20  LSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + + ++ G +  + K LE+ + + I+  V+ S LRGRGGAGF T  KW F   + +  P 
Sbjct: 34  IEEYVTTGGYSALRKALERLKPEDIVVLVEESTLRGRGGAGFPTARKWRF--ALMNPEPR 91

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ N DESEPGT KDR I+  +PH L+EG +IA +A+GA   +IY+RGE+      L+ 
Sbjct: 92  YLICNCDESEPGTFKDRIIVERDPHLLLEGMIIAGYALGAKEGYIYIRGEYPAGYLILEN 151

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A++E  + G LG N  LG  +  DI V+ GAGAYICGEETAL+ESLEGK+G PRL+PP+P
Sbjct: 152 AIEEAKSYGFLGENI-LGTNFSFDIKVYRGAGAYICGEETALIESLEGKRGHPRLRPPYP 210

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VG+YG PT VNNVE+++ +P I+     ++   G     G KLF ISG V  P   E 
Sbjct: 211 AQVGIYGKPTVVNNVETLSNIPIIVTY-EQYFMNIGPSGFYGPKLFPISGKVEKPGVYEA 269

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +M IT  ELI+   GGI+ G     AV  G   V       M    MDY      G G G
Sbjct: 270 TMDITLRELID-MAGGIKNG-KRFKAVFSGALGVYSEKDLDMP---MDYS---PKGFG-G 320

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T   IV+D    II ++  ++ F+ HESCG+CTPCR GT   M +++++ +G   +++++
Sbjct: 321 TGTTIVLDEDDCIIDSLLVVANFFHHESCGKCTPCRVGTYEQMNILKKIKEGRGTEKDLE 380

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            L  +S+NI   +IC LG +A   +   ++ F    E  +++  +  F
Sbjct: 381 YLKHLSENIPAGSICGLGFSAPQAVSDALRKFPEEFEAHLNRSCKVCF 428


>gi|297156135|gb|ADI05847.1| putative respiratory chain oxidoreductase [Streptomyces
           bingchenggensis BCW-1]
          Length = 626

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 163/398 (40%), Positives = 226/398 (56%), Gaps = 18/398 (4%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           R+   +  +   SL D  + G +  + +    G   +I EV  +GL GRGGA F TG KW
Sbjct: 213 RLLRRVGVVDPASLDDYRAHGGYAALRRAFALGPAGVIREVGDAGLVGRGGAAFPTGRKW 272

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               +   D PHYLV NADESEPGT KDR +M  +P+ LIE   IA + IGAH  ++Y+R
Sbjct: 273 DATARQ-PDHPHYLVCNADESEPGTFKDRVLMEGDPYALIEAMTIAGYTIGAHHGYLYLR 331

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+ R    L+ A+ +  A GLLG +    G   DI +  GAGAYICGEETA+  S+EG+
Sbjct: 332 GEYPRALARLEHAIGQARARGLLGPDVLGQGIAFDIEIRRGAGAYICGEETAIFNSIEGR 391

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G+PR KPPFP   GL+G PT VNNVE++  V  IL  GA  YS  G E + GTKLF +S
Sbjct: 392 RGEPRSKPPFPVEQGLFGKPTAVNNVETLVNVLPILTEGAEAYSSVGTETSTGTKLFCVS 451

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD- 304
           G V+ P   E     T  EL++     + G    L AV+ GG++      G +R   +D 
Sbjct: 452 GAVDRPGVYELPFGATLRELLD-----LAGPPPALRAVLLGGAA-----GGFVRPDELDV 501

Query: 305 ---YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
              ++G +  G+ LG+  V+V+D S ++ + + R++ F++ ESCGQC PCR GT      
Sbjct: 502 PLTFEGTRAAGTTLGSGVVLVLDESVELPRVLLRIAEFFRDESCGQCVPCRVGTVRQEEA 561

Query: 362 MERLV--KGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
           + R+    G A   +I LL EV + +   +IC LG  A
Sbjct: 562 LHRIKDRTGAAAAGDIALLREVGQAMRDASICGLGQTA 599


>gi|83590721|ref|YP_430730.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
 gi|83573635|gb|ABC20187.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
          Length = 592

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 168/399 (42%), Positives = 242/399 (60%), Gaps = 13/399 (3%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  + K L   R+ +IN +K SGLRGRGGAGF TG+KW +  K   DR  Y+V NADE +
Sbjct: 136 YQGLKKALALPREEVINIIKESGLRGRGGAGFPTGLKWEYTFKAPGDR-KYVVCNADEGD 194

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PG   DR ++  +PH ++EG +IA++AIGA   +IYVR E+    + L+ A+ +    G 
Sbjct: 195 PGAFMDRSVLEGDPHAVLEGMLIAAYAIGAREGYIYVRAEYPLAVQRLRIALAQARERGF 254

Query: 149 LGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
            G    LG D   ++ +  GAGA++CGEETALL S++G++G PR +PPFPA  GL+G PT
Sbjct: 255 CGERI-LGTDFSCELYIREGAGAFVCGEETALLASIQGERGMPRPRPPFPARQGLWGQPT 313

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            +NNVE+ A VP ILRRGA WY+  G E ++GTK+F+++G V     VE  M IT  E+I
Sbjct: 314 NINNVETYANVPLILRRGAGWYASLGTEKSKGTKIFALTGKVKNTGLVEVPMGITLREII 373

Query: 267 EKHCGGI---RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
               GGI   RG      AV  GG S  CLPA  +   + DYD L   G+ +G+  ++VM
Sbjct: 374 FNIGGGILEDRG----FKAVQIGGPSGGCLPAEHLDLPV-DYDSLTAAGAMMGSGGLVVM 428

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
           D ST +++       F + ESCG+CTPCREG   M+ ++ R+ +G  ++ +++ L  +++
Sbjct: 429 DDSTCMVEVARFFLNFTQAESCGKCTPCREGIQQMLAILTRITRGQGREGDLEQLERLAR 488

Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            I+G  +C LG  A  P+   ++ FR   E  I   HRC
Sbjct: 489 VIKGTALCGLGQTAPNPVLSTLRYFRAEYEAHIRD-HRC 526


>gi|296127182|ref|YP_003634434.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563]
 gi|296018998|gb|ADG72235.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563]
          Length = 562

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/378 (39%), Positives = 231/378 (61%), Gaps = 10/378 (2%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E   D ++ E++ SGLRGRGGAGF T  KWSF   V +++  Y+V NADE +PG   D
Sbjct: 174 LFEMTPDEVLKEMQISGLRGRGGAGFPTWKKWSFTKGVEAEQ-KYIVCNADEGDPGAYMD 232

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152
           R I+  +PH++IE   IA + +GA   ++Y+R E+    + ++ A+++ Y  GLLG N  
Sbjct: 233 RSILEGDPHSVIEAMTIAGYTVGASKGYLYIRAEYGLAVDRVKIALEQAYNYGLLGQNIL 292

Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            S   +D+DI +  GAGA++CGEETALL S+EG +G PR +PPFPA  GL+  PT +NNV
Sbjct: 293 GSNFSFDLDIRL--GAGAFVCGEETALLASIEGNRGTPRPRPPFPAIKGLFEYPTVINNV 350

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E+ A V  I+  G +W++  G EN++GTK+F+++G+VN    VE  M  T  E++    G
Sbjct: 351 ETFANVTAIINNGGNWFASIGTENSKGTKVFALTGNVNVSGLVEVPMGTTIREIVFDIGG 410

Query: 272 GIRGGWDNLL-AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GI    D  +  V  GG S   LP   + G  +D+D L E+GS +G+  +IV+D  ++++
Sbjct: 411 GIPN--DKFVKGVQTGGPSGGILPE-SLFGTHIDFDNLVELGSMMGSGGMIVIDEDSNMV 467

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
                   F   ESCG+C PCR G   M++++E+  K  A++ +I  L +++  +   ++
Sbjct: 468 DFAKFYLGFCVDESCGKCVPCRVGGMQMLKILEKFTKKRAKEDDIQKLKDIALTMRKASL 527

Query: 391 CALGDAAAWPIQGLIKNF 408
           CALG  AA P+   +K+F
Sbjct: 528 CALGSTAANPVMSTLKHF 545


>gi|256544554|ref|ZP_05471927.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC
           51170]
 gi|256399879|gb|EEU13483.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC
           51170]
          Length = 512

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 160/405 (39%), Positives = 239/405 (59%), Gaps = 5/405 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ + ++RG +  + K L E  R  II  +  S LRGRGGAGF TG KW        D+
Sbjct: 43  RSIDEYIARGGYFALHKALSEMDRKEIIEIISNSMLRGRGGAGFPTGKKWQTAYDYDVDK 102

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ NADE +PG   DR I+ ++PH+++E   IA +AIG+   FIYVR E+ +  ESL
Sbjct: 103 -KYIICNADEGDPGAYMDRSILENDPHSVLEAMAIAGYAIGSDEGFIYVRAEYPKAVESL 161

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +    G LG N    G++  I +  G+GA++CGE TAL+ES+EGK+G PR+K   
Sbjct: 162 KYAIKDAEEKGFLGKNIMDSGFNFTIELRLGSGAFVCGESTALMESIEGKRGMPRVKIHR 221

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A  GL+  PT +NNVE++A V  I+  GA WY   G E + GTK+FS+ G V     +E
Sbjct: 222 TAFRGLWQKPTVINNVETLANVAQIIINGADWYRSIGTEKSPGTKVFSLVGDVKNSGLIE 281

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  E+I    GGI G  + L AV  GG S  C+PA  +  ++ DY+ LKE+ S +
Sbjct: 282 VPMGTTLREIIYDLGGGIEGDKE-LKAVQTGGPSGGCIPAKYLDSSV-DYETLKELNSIM 339

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  ++VMD +T ++        F   ESCG+C PCREGT  ++ ++ER+V G  +  +I
Sbjct: 340 GSGGMVVMDENTCMVDIARFFLDFTCDESCGKCVPCREGTKRILEILERIVAGKGKMEDI 399

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           D L E+S+ +   ++C LG +AA+P+   +K ++    + I   H
Sbjct: 400 DRLEELSELVTEASLCGLGKSAAFPVISTLKYYKDEYIDHIKNKH 444


>gi|302555320|ref|ZP_07307662.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472938|gb|EFL36031.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 607

 Score =  283 bits (724), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 163/393 (41%), Positives = 223/393 (56%), Gaps = 10/393 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G +  + +  E G   +I EV  SGL GRGGA F TG KW        DRPH
Sbjct: 218 SLDDYRAHGGYTALRRAFELGPAGVIREVTDSGLVGRGGAAFPTGRKWQATASQ-PDRPH 276

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           +LV NADESEPGT KDR +M  +P+ L+E   IA +A GAH  ++Y+RGE+ R    L+ 
Sbjct: 277 HLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAGYATGAHKGYLYLRGEYPRALRRLEH 336

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV +  A GLLG +    GY  DI +  GAGAYICGEETAL  S+EG +G+PR KPPFP 
Sbjct: 337 AVAQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYRGEPRSKPPFPV 396

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT  NNVE++  V  IL  GA  Y+  G E + G KLF +SG V  P   E  
Sbjct: 397 EKGLFGKPTVENNVETLVNVLPILTLGAPAYAAIGTERSTGPKLFCVSGSVERPGVYEVP 456

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  +L+     G+R G   L AV+ GG++   + A ++    + ++G +E G+ LG+
Sbjct: 457 FGATLGDLLA--LAGVRQG---LRAVLLGGAAGGFVRADEL-DVPLTFEGTREAGTTLGS 510

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK--GIAQKREI 375
             V+  D S  + + + R++ F++ ESCGQC PCR GT      + R+V+  G     +I
Sbjct: 511 GVVMAFDDSVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIVERTGADAAGDI 570

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            LL EV + +   +IC LG  A   ++  I   
Sbjct: 571 ALLREVGRAMRDASICGLGQTAWNAVESAIDRL 603


>gi|304313910|ref|YP_003849057.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg]
 gi|302587369|gb|ADL57744.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 620

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 150/392 (38%), Positives = 239/392 (60%), Gaps = 5/392 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           ++++  ++ G +  + + LE   + II EVK SGLRGRGGAGF T +KWS   +  SD  
Sbjct: 145 ENINHYLATGGYRGLLRALEMKPEDIIEEVKDSGLRGRGGAGFPTWLKWSLCRQEESD-V 203

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV NADE +PG   +R ++  +PH+L+EG +IAS+A+GA  A+IY R E+    E L+
Sbjct: 204 KYLVCNADEGDPGAFMNRSLIEGDPHSLLEGILIASYAVGAEEAYIYCRAEYPLALERLR 263

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ +    GLLG +    G+ +DI +  GAGA++CGEETAL+ S+EGK+G PR +PPFP
Sbjct: 264 TAISDLRDLGLLGEDILDSGFSLDIRIKEGAGAFVCGEETALIASIEGKRGMPRTRPPFP 323

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT +NNVE++A V  I++ G  +++  G E + GTK FS+ G V     +E 
Sbjct: 324 TTSGLWGKPTVINNVETLAAVSMIMQHGPEYFNTPGTEGSPGTKTFSLVGDVRRTGLIEV 383

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            +  +  E+I    GG+R G   L AV  GG S  CLPA ++    +DYD L   G+ +G
Sbjct: 384 PLGTSLREVIHDIGGGVRDG--ELKAVQIGGPSGGCLPA-ELVDTGIDYDSLTSAGAIMG 440

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++V+   T +++       F + ESCG+C PCR GT  M+ ++  +V+G  ++ +++
Sbjct: 441 SGGLVVLSDHTCMVELARYFLEFTQRESCGKCVPCRVGTRQMLMILNDIVEGSGREEDLE 500

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +L ++++ +   ++C LG  +  P+   ++ F
Sbjct: 501 ILRDIAETVRAASLCGLGQTSPNPVLTTLRYF 532


>gi|186470175|gb|ACC85638.1| HoxF [Lyngbya majuscula CCAP 1446/4]
          Length = 538

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 144/378 (38%), Positives = 230/378 (60%), Gaps = 9/378 (2%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           I E   + ++ E+  SGLRGRGGAG+ TG+KW+ + K+   +  Y++ NADE +PG   D
Sbjct: 148 IYEMTPEEVVAEITKSGLRGRGGAGYPTGLKWATVAKMPPGQ-KYVICNADEGDPGAFMD 206

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152
           R ++  +PH ++EG  IA +A+GA+  +IYVR E+      LQ A+ +    G+LG+   
Sbjct: 207 RSVLESDPHRILEGMAIAGYAVGANQGYIYVRAEYPLAISRLQKAIQQAKRQGILGTQIF 266

Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            + + + VDI V  GAGA++CGEETAL+ S++G +G PR +PP+PA  GL+  PT +NNV
Sbjct: 267 GAPVDFSVDIRV--GAGAFVCGEETALIASIDGNRGVPRPRPPYPAVSGLWEKPTLINNV 324

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E+ A +  I+R+GA W+   G E ++GTK+FS++G +     +E  M IT  E++E+  G
Sbjct: 325 ETFANITPIIRKGADWFGSIGTEKSKGTKIFSLTGKIRNTGLIEVPMGITLREIVEEMGG 384

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+  G   + AV  GG S  C+P   +    +DY+ L ++GS +G+  ++VMD+ T +I+
Sbjct: 385 GVPDG--EVKAVQTGGPSGGCIPV-HLLDTPVDYESLTKLGSMMGSGGMVVMDQGTSMIQ 441

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
                  F + ESCG+C PCR GT  M +++ +L+K  A   +++ L E+   ++  ++C
Sbjct: 442 VAQFYMDFCREESCGKCIPCRAGTVQMYQLLTKLIKKQATAADLEKLKELCSMVKATSLC 501

Query: 392 ALGDAAAWPIQGLIKNFR 409
            LG  A  PI   +  F 
Sbjct: 502 GLGQTAPNPIVSTLHYFE 519


>gi|83630910|gb|ABC26907.1| HoxF [Arthrospira platensis FACHB341]
          Length = 531

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 142/371 (38%), Positives = 228/371 (61%), Gaps = 9/371 (2%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++ E+  SGLRGRGGAG+ TG+KW+ + K+   +  Y++ NADE +PG   DR ++  
Sbjct: 154 EEVVAEITKSGLRGRGGAGYPTGLKWATVAKMPGQK--YVICNADEGDPGAFMDRSVLES 211

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGY 157
           +PH ++EG  IA +A+GA   +IYVR E+      LQ A+ +     +LGS    S + +
Sbjct: 212 DPHRILEGMAIAGYAVGATQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSINF 271

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           ++DI V  GAGA++CGEETAL+ S+ G +G PR +PP+PA  GL+ CPT +NNVE++  +
Sbjct: 272 NIDIRV--GAGAFVCGEETALIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNI 329

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             I+R GA WY+  G E ++GTK+FS++G +     +E  M IT  E++E+  GGI GG 
Sbjct: 330 APIIRNGADWYNQIGTEKSKGTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL 389

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             + AV  GG S  C+PA Q     +DY+ L ++GS +G+  ++VMD +T +++      
Sbjct: 390 -QVKAVQTGGPSGGCIPA-QFLDTPVDYESLTKLGSMMGSGGMVVMDENTSMVQVAQFYM 447

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F + E+CG+C PCR GT  M +++ +L+   A   +++ L ++   +   ++C LG  A
Sbjct: 448 EFCRGETCGKCIPCRVGTVQMYQLLTKLLNKQATPADLEKLKQLCDMVRATSLCGLGMTA 507

Query: 398 AWPIQGLIKNF 408
             P+   ++ F
Sbjct: 508 PNPVTSTLQYF 518


>gi|326561160|gb|EGE11525.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 7169]
 gi|326569469|gb|EGE19529.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC8]
 gi|326572769|gb|EGE22755.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC7]
          Length = 472

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 161/409 (39%), Positives = 242/409 (59%), Gaps = 14/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRP 77
           +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM P     R 
Sbjct: 59  TLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFMTPPDGGVR- 117

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE++   + L+
Sbjct: 118 -YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLK 176

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A++EC A+ LLG +  LG  ++  + +H GAG YICGEETAL+  LEG++  PR KPPF
Sbjct: 177 NAINECVANHLLG-DGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRANPRTKPPF 235

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYP 251
           P   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +SG V   
Sbjct: 236 PQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDA 295

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKE 310
              E     T  ELIE   GG++ G  +L A +PGG+S   L A  +    +MD+D + +
Sbjct: 296 GLWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMK 353

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++ +  G A
Sbjct: 354 AGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQA 413

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           Q  +ID L E+++++  G+T CA    A  P+   +K FR   E++++ 
Sbjct: 414 QADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 462


>gi|254430638|ref|ZP_05044341.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001]
 gi|197625091|gb|EDY37650.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001]
          Length = 606

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 150/397 (37%), Positives = 240/397 (60%), Gaps = 7/397 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ D+++ G +  + ++L E   + + ++VK SGLRGRGGAG+ TG+KW  +  +    
Sbjct: 129 ESIDDALAHGSYAQLKRVLLECTPEQVRDQVKRSGLRGRGGAGYPTGLKWDTV-ALQPPG 187

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P  +V NADE +PG   DR ++  +PH LIEG  IA+FA+GA   ++YVR E+    E L
Sbjct: 188 PRTVVCNADEGDPGAFMDRSVLESDPHRLIEGMAIAAFAVGADQGYVYVRAEYPLAIERL 247

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +  + GLLG+  +   +++ + V  GAGAY+CGEETALL S++G++G PR +PPF
Sbjct: 248 RLALRQARSKGLLGNGIAGSSFNLRLEVRVGAGAYVCGEETALLASIQGQRGTPRPRPPF 307

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA VGL+G PT +NNVE++A +P ILR G  WY+  G E ++GTK+F++SG V     VE
Sbjct: 308 PAQVGLWGAPTLINNVETLASIPVILREGGDWYAAMGTEGSKGTKVFALSGAVERTGLVE 367

Query: 256 ESMSITFDELIEK---HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             M  +   +++       G  G    + AV  GG S  C+PA  +    +DY+ L+ +G
Sbjct: 368 VPMGTSLRTVVQTIGGGVPGGEGPDGGVKAVQTGGPSGGCIPA-HLLDTPVDYESLRALG 426

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S +G+  ++VM   T + +       F  +ESCG+C PCR GT  ++++++R V+  A  
Sbjct: 427 SMMGSGGLVVMGERTAMPEVARHFMRFSVNESCGKCVPCRAGTVQLLQLLDRFVERRASL 486

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            +++ L  +   +   ++C LG AA  P+   ++ FR
Sbjct: 487 GDLERLEALCGMVGATSLCGLGQAAPNPVLSTLRYFR 523


>gi|149374623|ref|ZP_01892397.1| NADH-quinone oxidoreductase, F subunit [Marinobacter algicola
           DG893]
 gi|149361326|gb|EDM49776.1| NADH-quinone oxidoreductase, F subunit [Marinobacter algicola
           DG893]
          Length = 460

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 157/402 (39%), Positives = 237/402 (58%), Gaps = 8/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L + + +  + +V   L+ G    II  +K + +RGRGGAGFS G+KWS   +  +    
Sbjct: 45  LDEYLRKDGYQSVRAALDNGNPQAIIATMKDANVRGRGGAGFSAGLKWSLTLQGGNMPRG 104

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M  +PH LIEG ++ + A  +   +I++RGE++     L  
Sbjct: 105 YLICNADEMEPGTFKDRLLMEQQPHLLIEGMILGALANNSFYGYIFLRGEYVEAARVLNR 164

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+DE   +G LG++ +  G+D DI VH GAG YICGEETAL+ SLEGK+  PR KPPFP 
Sbjct: 165 ALDEAREAGWLGADINGSGFDFDIAVHTGAGRYICGEETALINSLEGKRANPRAKPPFPG 224

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG--RENNRGTKLFSISGHVNYPCTVE 255
             G +G P+ VNNVE++  VP ++ +GA WY      R ++ G+KL+ +SG V  P   E
Sbjct: 225 QSGAWGKPSVVNNVETLCNVPAVILKGADWYQALSGDRTDDGGSKLYGVSGPVEKPGLWE 284

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  E++E+  GG+R    +L A +PGG+S   L    +    +D+D + + GS L
Sbjct: 285 LPMGTTGAEILER-AGGMRAN-RSLKAWLPGGASTGFLLPEHLD-LPLDFDTVGKEGSRL 341

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  + V+ +   ++  +  L  F+  ESCG CTPCR+G  W ++++  L  G  +  +I
Sbjct: 342 GTGLLTVVPQEQSMVALMRNLEEFFARESCGWCTPCRDGLPWTVKLLRALELGQGETGDI 401

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +LL +++ +   G T CA    AA P+Q  +K+FR   E+ +
Sbjct: 402 ELLDKLAADCGPGLTFCAHAPGAAMPLQTALKHFRQEFEQGV 443


>gi|302388830|ref|YP_003824651.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199458|gb|ADL07028.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 583

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 160/415 (38%), Positives = 249/415 (60%), Gaps = 6/415 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  +S+ + + +G +  ++K+L E   + +I E+K SGLRGRGGAGF T
Sbjct: 101 QVRIALRNCGAIDPESIEEYIEKGGYKALEKVLKEMTPEQVIEEMKVSGLRGRGGAGFPT 160

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
             KW+   +     P Y+V NADE +PG   DR ++  +PH+++EG  IA +AIGA   +
Sbjct: 161 WFKWN-ATRSAQGSPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEGMAIAGYAIGAEHGY 219

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    + L+ A+++    G LGSN    G+  D+ +  GAGA++CGEETAL+ S
Sbjct: 220 IYVRAEYPLAIKRLEIAIEQAREKGFLGSNIFGTGFSFDVKIKAGAGAFVCGEETALIAS 279

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEG++G PRLKPPFPA  G  G PT +NNVE+ A VP I+  G   ++  G E ++GTK+
Sbjct: 280 LEGERGMPRLKPPFPAQKGYMGKPTNINNVETFANVPWIILNGGKAFAAIGTEKSKGTKV 339

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G V     VE  M I   ++I +  GGI+     + AV  GG S  C+P   +   
Sbjct: 340 FALAGKVKKGGLVEVPMGIPLRDVIFRIGGGIKNDR-KIKAVQLGGPSGGCVPESLLDTP 398

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           + DY+ + + G+ +G+  +IVMD +T ++        F + ESCG+CT CR GT  M+ +
Sbjct: 399 V-DYESIVKTGAIMGSGGMIVMDETTCMVDMARFFLDFTRKESCGKCTHCRLGTKRMLEI 457

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +ER+ +G  ++ +++LL E++ N++G ++C LG  A  P+   ++ FR   E  I
Sbjct: 458 LERICEGRGEESDLELLEELAVNVKGGSLCGLGQTAPNPVLTTLRYFRDEYEAHI 512


>gi|284050504|ref|ZP_06380714.1| NADH dehydrogenase (quinone) [Arthrospira platensis str. Paraca]
 gi|291570291|dbj|BAI92563.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira
           platensis NIES-39]
          Length = 537

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 142/372 (38%), Positives = 228/372 (61%), Gaps = 8/372 (2%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++ E+  SGLRGRGGAG+ TG+KW+ + K+   +  Y++ NADE +PG   DR ++  
Sbjct: 154 EEVVAEITKSGLRGRGGAGYPTGLKWATVAKMPPGQ-KYVICNADEGDPGAFMDRSVLES 212

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGY 157
           +PH ++EG  IA +A+GA   +IYVR E+      LQ A+ +     +LGS    S + +
Sbjct: 213 DPHRILEGMAIAGYAVGATQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSINF 272

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           ++DI V  GAGA++CGEETAL+ S+ G +G PR +PP+PA  GL+ CPT +NNVE++  +
Sbjct: 273 NIDIRV--GAGAFVCGEETALIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNI 330

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             I+R GA WY+  G E ++GTK+FS++G +     +E  M IT  E++E+  GGI GG 
Sbjct: 331 APIIRNGADWYNQIGTEKSKGTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL 390

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             + AV  GG S  C+PA Q     +DY+ L ++GS +G+  ++VMD +T +++      
Sbjct: 391 -QVKAVQTGGPSGGCIPA-QFLDTPVDYESLTKLGSMMGSGGMVVMDENTSMVQVAQFYM 448

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F + E+CG+C PCR GT  M +++ +L+   A   +++ L ++   +   ++C LG  A
Sbjct: 449 EFCRGETCGKCIPCRVGTVQMYQLLTKLLNKQATPADLEKLKQLCDMVRATSLCGLGMTA 508

Query: 398 AWPIQGLIKNFR 409
             P+   ++ F 
Sbjct: 509 PNPVTSTLQYFE 520


>gi|254173091|ref|ZP_04879765.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
 gi|214033247|gb|EEB74075.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
          Length = 599

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 234/393 (59%), Gaps = 4/393 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +++ + ++ G ++ + K L    + II+ +  SGLRGRGGAGF TG+KW F  +   D  
Sbjct: 129 ENIDEYITVGGYEALKKALSMEPEEIIDIIMKSGLRGRGGAGFPTGLKWKFTREAKGDE- 187

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ NADE +PG   DR+++  +PH +IEG +I ++AIGA   FIYVR E+      L+
Sbjct: 188 KYIICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATKGFIYVRAEYPLAIRRLR 247

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ +    G LG N    G+  DI +  GAGA++CGEETAL+ S+EGK+G PR +PP+P
Sbjct: 248 IALKQAKERGFLGENILGSGFSFDIEIKEGAGAFVCGEETALIASIEGKRGMPRPRPPYP 307

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNVE+ A VP I+R G   ++  G E ++GTK+F++SG + +   VE 
Sbjct: 308 AQKGLFGKPTNINNVETWANVPWIIRHGWKAFASLGTEKSKGTKVFALSGKIKHGGNVEV 367

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  T  E++    GG + G   + AV  GG S  C+P   +    +DY+ +   G+ +G
Sbjct: 368 PMGTTLREILYDIGGGTKTG-KRIKAVQLGGPSGGCIPE-YLFDTPVDYESVNATGAIMG 425

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++VMD  T ++        F   ESCG+CT CR GT  M+ ++ER  +G A K +++
Sbjct: 426 SGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRVGTKRMLEILERFTEGKATKEDLE 485

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L +++  ++  ++C LG  A  P+   ++ FR
Sbjct: 486 RLEKLAHQVKAGSLCGLGQTAPNPVLTTLRYFR 518


>gi|77993213|dbj|BAE46793.1| bidirectional hydrogenase F subunit [Nostoc sp. PCC 7422]
          Length = 541

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 232/376 (61%), Gaps = 13/376 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD------RPHYLVVNADESEPGTCKDRD 96
           +++++  SGLRGRGGAG+ TG+KW+ + K   D         +++ NADE +PG   DR 
Sbjct: 162 VVDDITRSGLRGRGGAGYPTGVKWATVAKAKGDAYGAHSERKFVICNADEGDPGAFMDRS 221

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---S 153
           ++  +PH ++EG  IA++++GA+  +IY+R E+      LQ A+ +    GLLGSN   S
Sbjct: 222 VLESDPHRVLEGMAIAAYSVGANQGYIYIRAEYPIAINRLQIAIRQAQRLGLLGSNIFDS 281

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              + +DI +  GAGAY+CGEETAL+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+
Sbjct: 282 PFDFKIDIRI--GAGAYVCGEETALMASIEGKRGTPHPRPPYPAESGLWGFPTLINNVET 339

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A VP I+R+GA  ++  G E ++GTK+F+++G +     +E  M  T  +++E+  GG+
Sbjct: 340 YANVPWIIRKGADVFASIGTEKSKGTKVFALAGKIKNTGIIEVPMGTTLRQIVEEMGGGV 399

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
             G     AV  GG S  C+PA     A+ DY+ L ++GS +G+  +IVMD S++++   
Sbjct: 400 PDGG-TAKAVQTGGPSGGCIPASAFDSAV-DYESLTQLGSMMGSGGMIVMDESSNMVDVA 457

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                F   ESCG+C PCR GT  + +++ ++ +G A   +++LL E+   ++  ++C L
Sbjct: 458 RFFMEFCMDESCGKCIPCRVGTVQLYKLLTKISEGKASFADLELLEELCDMVKHTSLCGL 517

Query: 394 GDAAAWPIQGLIKNFR 409
           G +A  P+   ++ FR
Sbjct: 518 GQSAPNPVFSTLRYFR 533


>gi|254425647|ref|ZP_05039364.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Synechococcus sp. PCC 7335]
 gi|196188070|gb|EDX83035.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Synechococcus sp. PCC 7335]
          Length = 534

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 241/409 (58%), Gaps = 9/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q  +  N   +  + + D ++   +  + ++L E   D +   +  SGLRGRGGAG+ TG
Sbjct: 124 QHIVLENSGKVDPEKIEDYVALQGYAALYRVLREYSPDEVTKAIAQSGLRGRGGAGYPTG 183

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW  + K+   +  Y+V NADE +PG   DR ++  +PH ++EG  IA++A+GA   +I
Sbjct: 184 LKWETVAKMPPGQ-KYVVCNADEGDPGAYMDRSVLESDPHRVLEGMAIAAYAVGATQGYI 242

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLE 180
           YVRGE+      LQ A+ +    GLLGS   +S L + +D+ +  GAGA++CGEETAL+ 
Sbjct: 243 YVRGEYPLAINHLQTAIQQARKHGLLGSQIFDSPLDFRIDLRI--GAGAFVCGEETALMA 300

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G P  +PP+PA  GL+G PT +NNVE+ A +  I+R GA W++G G   ++GTK
Sbjct: 301 SIEGRRGIPEQRPPYPAESGLWGRPTLINNVETYANIAPIIRNGADWFAGIGTGKSKGTK 360

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS++G V     +E  M I+   +++   GG   G  ++ AV  GG S  C+PA     
Sbjct: 361 VFSLTGKVQNAGLIEVPMGISLQAIVDDIGGGAAAG-RSVKAVQTGGPSGGCIPASAFET 419

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           ++ DY+ LK++GS +G+  +IVMD  T ++        F   ESCG+C PCR GT  + +
Sbjct: 420 SV-DYESLKQLGSIMGSGGLIVMDDQTSMVDVARYFMEFCMEESCGKCIPCRAGTVQLYQ 478

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ +  +G A   ++  L ++   ++  ++C LG AA  P+   ++ FR
Sbjct: 479 LLCKFTQGQANSADLTQLEQLCDMVKHTSLCGLGQAAPNPVISTLQYFR 527


>gi|116750139|ref|YP_846826.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116699203|gb|ABK18391.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 552

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 154/407 (37%), Positives = 236/407 (57%), Gaps = 9/407 (2%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + L   ++RG +  +   L E   + +  E+  SG+RGRGGAG+ +G+KW  + K   ++
Sbjct: 138 EKLESYVARGGYTALGHALREMTPEEVCEEIARSGIRGRGGAGYPSGLKWHMVRKAPGEK 197

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N DE +PG   DR +M  +PH ++EG  IA +A+GA   +IYVRGE+    + L
Sbjct: 198 -KYVVANGDEGDPGAYMDRTLMESDPHRVLEGMAIAGYAVGADQGYIYVRGEYPLAAKRL 256

Query: 137 QAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           + A+      GLLGS   +S   + +DI    GAGA++CGEETAL+ S+ G++GQP  +P
Sbjct: 257 EKAIRAAERRGLLGSRVLDSNFSFRIDI--RMGAGAFVCGEETALMASIMGRRGQPVPRP 314

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P+PAN GL+G PT +NNVE+   +  I+  GA WY+ FG E ++G K+F+++G VN    
Sbjct: 315 PYPANKGLWGGPTLINNVETFGNIAAIIGNGAEWYASFGTEKSKGAKIFALAGKVNNTGL 374

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +E  + IT  E++    GGI GG     A   GG S  C+PA  +   I DY+ L+++GS
Sbjct: 375 IEVPIGITLREIVYDIGGGIPGG-RAFKAAQTGGPSGGCIPAEYLDTPI-DYETLQKLGS 432

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +G+  +IVMD  + +         F   ESCG+CTPCR GT  M R+++++  G A   
Sbjct: 433 IMGSGGLIVMDDQSCMPDVAKFFMEFCMDESCGKCTPCRVGTVQMHRMLDKITNGTATMD 492

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++  L E+   ++  ++C LG  A  PI   ++ FR   E  I  +H
Sbjct: 493 DLKRLEELCLMVKESSLCGLGQTAPNPIYSTLRYFRDEYEAHIKDHH 539


>gi|189499447|ref|YP_001958917.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
 gi|189494888|gb|ACE03436.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
          Length = 594

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 156/413 (37%), Positives = 241/413 (58%), Gaps = 9/413 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGA 58
           L  Q RI   N+  +  +SL     RG + +++KI+ +G   + +I EV+ SGLRGRGGA
Sbjct: 106 LDRQTRIALRNIGQVDPQSLDAYRERGGYRSIEKIITEGIKPEQVIEEVRVSGLRGRGGA 165

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T +KW F      ++  YL+ N DE +PG   DR ++  +PH  +EG +IA++AIGA
Sbjct: 166 GFPTAVKWGFARSAKGEK-KYLICNGDEGDPGAFMDRSLLEGDPHNALEGMLIAAYAIGA 224

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEET 176
              + Y+R E+    E  + A+D+   +GLLG+N  LG  +D D+ +  GAGA++CGEET
Sbjct: 225 SSGYAYIRAEYPLAVEHFRKAIDDARKAGLLGNNI-LGSSFDFDVTIKQGAGAFVCGEET 283

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EG++G PR++PPFPA  GL+G PT +NNVES+A +P I+  G + Y+  G E +
Sbjct: 284 ALIASIEGERGMPRIRPPFPAVKGLFGKPTIINNVESLANLPWIIEHGGAAYAEIGTEKS 343

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F+++G +     VE  M  T  E++    GG   G   + AV  GG S  C+P  
Sbjct: 344 KGTKVFALAGPIKRGGLVEVPMGTTVREVLYDIGGGSSAGRP-IKAVQLGGPSGGCIPES 402

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                I +Y+ L   G+ +G+  ++VMD  + ++        F + ESCG+CT CR GT 
Sbjct: 403 LFDTPI-EYEALNATGAIMGSGGMVVMDTKSCMVDIARYFLEFTQIESCGKCTFCRIGTL 461

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            M  ++ R+  G     +ID L +++  +   ++C LG  A  P+   +K FR
Sbjct: 462 RMKELLTRICDGQGTMDDIDTLEDIAHQVRSSSLCGLGQTAPNPVLTTLKYFR 514


>gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 624

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/393 (38%), Positives = 229/393 (58%), Gaps = 5/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D M RG + +  K+L++G  D +I  +K SGLRGRGGAGF TG+KW        D+ 
Sbjct: 158 SIDDYMGRGGYLSFIKVLKEGNPDNVIKTIKDSGLRGRGGAGFPTGVKWEITKNSRGDK- 216

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            ++V N DE +PG   +R ++  +PH ++EG +IA++ IGA   + Y+R E+    E  +
Sbjct: 217 KFVVCNGDEGDPGAFMNRTLLERDPHAVLEGMLIAAYTIGAQKGYAYIRAEYPVAVEMFR 276

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+++    GL+G N    G+  DI +  GAGA++CGEETALL S+EGK+G PR +PP+P
Sbjct: 277 KAIEDAKRLGLIGENILGTGFSFDIEIKEGAGAFVCGEETALLASIEGKRGVPRPRPPYP 336

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNVE+ A VP I+R GA  Y   G  N+ GTK+FS++G V     +E 
Sbjct: 337 AQAGLWGYPTLINNVETYANVPKIIRDGAENYRKRGVPNSPGTKMFSVTGPVKLTGIIEV 396

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  +++ + CGG+ G  +   AV  GG S  CL    +    +DYD LK  G+ +G
Sbjct: 397 EFGTTLRQIVYEICGGLTGD-NEFKAVQIGGPSGACLSEAFL-DLPLDYDSLKSAGAMVG 454

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++V+ +   +++       F K ESCG+C PCREG     R++ER  +G     +++
Sbjct: 455 SGGIVVLSKKACMVEVARFFLDFTKRESCGKCIPCREGLMQAYRILERFTQGKGTYEDLE 514

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  ++  I+  + C LG  A  PI   ++ FR
Sbjct: 515 NLEFLAGLIKTASACGLGQTAPNPILSTLRLFR 547


>gi|315185457|gb|EFU19228.1| NADH dehydrogenase (quinone) [Spirochaeta thermophila DSM 6578]
          Length = 418

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 157/391 (40%), Positives = 227/391 (58%), Gaps = 11/391 (2%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L   +SRG +  + + L +    +I EVKASGLRGRGGAGF TG+KW     V   +  Y
Sbjct: 19  LEACLSRGGFMGLRQALARTPAKVIAEVKASGLRGRGGAGFPTGVKWE---SVQRHKEPY 75

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NADE EPGT KDR IM H P+ LIEG  IA +A+GA   FIY+RGE+    + L  A
Sbjct: 76  VVANADEGEPGTFKDRYIMEHAPYLLIEGMTIAGYAVGARRGFIYIRGEYPAIAKGLIKA 135

Query: 140 VDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           V+E      LG    LG  Y  DI +  G G+Y+ G+ETALL SL G +G P +KPP+P 
Sbjct: 136 VEEARKHHFLGEKI-LGSDYSFDISIKLGGGSYVVGDETALLNSLMGNRGYPMMKPPYPT 194

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNVE++A VP +  +GASW++  G E++ G KLF +SG V+ P   E  
Sbjct: 195 EEGLWGHPTLVNNVETLAYVPAVFTKGASWFTQIGPEHSPGLKLFCVSGDVHAPGLYELP 254

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M +   +L+E   GG++G    L AV  GG++ P      +    +DYD L+  G  LG+
Sbjct: 255 MGVPLHDLLEA-AGGVKG---TLKAVQIGGTAGPVYDDRALSFP-LDYDSLRAEGGALGS 309

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            AV+VM+ + ++ + +   + F+  ESCGQC PCR GT  +  +   ++ G  ++  +D 
Sbjct: 310 GAVVVMNHTRNMAEFLEVTTRFFSEESCGQCFPCRYGTRQLEFMARNIMMGKGKEEYLDE 369

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++   +   + C  G + A P+  ++  F
Sbjct: 370 MRDIVATMTVASFCPFGKSVALPVGNVLDLF 400


>gi|19112649|ref|NP_595857.1| iron sulfur cluster assembly protein (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74582910|sp|O94500|NDUV1_SCHPO RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; Flags: Precursor
 gi|4107329|emb|CAA22670.1| iron sulfur cluster assembly protein (predicted)
           [Schizosaccharomyces pombe]
          Length = 452

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 241/418 (57%), Gaps = 11/418 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           R+F NL   + + + D+++ G ++N+ +IL+     II  V+ S LRGRG  GF TG K 
Sbjct: 33  RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92

Query: 67  SFMPKVCS------DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             + K  S      ++P  ++VNA E++ G+ KDR ++RHEPH +IEG +IA+ A+ A  
Sbjct: 93  LSLYKATSSERGRKEKP-VVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASA 151

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178
            ++++R ++  E   +Q  + + YA  LLG N  LG  +  ++++H GAG+YI GEE+AL
Sbjct: 152 CYLFIRKDYYEETVMMQKCIIQAYAKKLLGKNL-LGTSIGLELLIHPGAGSYITGEESAL 210

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           ++SL+G+   P +        GL+G PT V NVE+++ +P I+++G  ++   GR NNRG
Sbjct: 211 IQSLQGEFPVPDIPINNTITSGLFGLPTLVLNVETVSNLPAIIKKGPKFFISMGRPNNRG 270

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLFSISG VN P  +E  MSI   +LIE + GG+RGGW+ L+ + PGG     L   Q 
Sbjct: 271 TKLFSISGEVNEPNVIEACMSIPLKDLIENYAGGVRGGWNKLVGIFPGGPCSGILNKNQC 330

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D LK + S LGT +VIV++    I +++   + FY   +C  C  CR+G   +
Sbjct: 331 EQVTMDFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDV 390

Query: 359 MRVMERLVKGIAQKREI-DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           +  ++ L  G A   ++ D+  + +     +  C  GD+    I  + +NF   I  R
Sbjct: 391 IETLKGLKDGHAHLSQLKDMFSKFNMPSSSKVFCGFGDSMRHQIHSIQRNFPDQITFR 448


>gi|75910850|ref|YP_325146.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Anabaena variabilis ATCC 29413]
 gi|1032476|emb|CAA55873.1| hydrogenase subunit [Anabaena variabilis ATCC 29413]
 gi|75704575|gb|ABA24251.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Anabaena variabilis ATCC 29413]
          Length = 535

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 227/368 (61%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ V  SGLRGRGGAG+ TG+KW+ + K   +R  +++ NADE +PG   DR ++  +P
Sbjct: 162 VVDSVNRSGLRGRGGAGYPTGLKWATVAKAKGER-KFVICNADEGDPGAFMDRSVLESDP 220

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H ++EG  IA++A+GA   +IYVR E+    + LQ A+ +    GLLGSN  +  +D  I
Sbjct: 221 HRVLEGMAIAAYAVGASQGYIYVRAEYPIAIKRLQTAIHQAQRLGLLGSNIFESPFDFKI 280

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGAY+CGEETAL+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A +  I+
Sbjct: 281 DIRIGAGAYVCGEETALMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPII 340

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R+GA W++  G   ++GTK+F+++G +     +E  M  +  +++E+  GGI  G     
Sbjct: 341 RKGADWFASIGTAKSKGTKVFALAGKIRNTGLIEVPMGTSLRQIVEQMGGGIPDG-GVAK 399

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  C+PA      + DY+ L  +GS +G+  +IVMD +T+++        F  
Sbjct: 400 AVQTGGPSGGCIPASAFDTPV-DYESLTNLGSMMGSGGMIVMDDTTNMVDVARFFMEFCM 458

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  +  ++ ++ +G A   +++LL E+   ++  ++C LG +A  P+
Sbjct: 459 DESCGKCIPCRVGTVQLHGLLSKIREGKASFADLELLEELCDMVKNTSLCGLGQSAPNPV 518

Query: 402 QGLIKNFR 409
              ++ FR
Sbjct: 519 FSTLRYFR 526


>gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 595

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 161/412 (39%), Positives = 248/412 (60%), Gaps = 6/412 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R+   N   +    + + +++  +  + K L E   + ++ E+K SGLRGRGG 
Sbjct: 110 FFRNQTRVVLRNCGQINPDDIHEYIAKDGYKALGKALKEMTPNQVVAEIKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K   D   Y++ NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGLKWELTAKSSGDT-KYVICNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              F+YVR E+    E +  A+++    GLLG N  +  +  DI V  GAGA++CGEETA
Sbjct: 229 RQGFVYVRAEYAIAVERVSHAIEQARELGLLGKNLFETDFAFDIEVRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE++A +P I+  GA W++ FG E +R
Sbjct: 289 LITSIEGNRGEPRPRPPFPAQKGLWGNPTLINNVETLANIPAIILNGAEWFTQFGTERSR 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T   +I    GGI  G  NL AV  GG S  C+PA  
Sbjct: 349 GTKVFALAGKINNTGLIEVPMGATLRHVIYDIGGGIPDG-KNLKAVQTGGPSGGCIPAHL 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I +YD L E+GS +G+  +IV+D S  ++        F + ESCG+CTPCR GT  
Sbjct: 408 LDTPI-EYDTLLELGSMMGSGGMIVLDESDCMVDIAKFYLEFTRDESCGKCTPCRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ ++ER+ +G  ++ +I LL E+++ I+  ++C LG +A  P+   ++ F+
Sbjct: 467 LLEILERITEGRGKEDDIPLLQELAEGIKETSLCGLGQSAPNPVLSTLRYFK 518


>gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
 gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
          Length = 630

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/369 (41%), Positives = 226/369 (61%), Gaps = 4/369 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D ++ EV  SG+RGRGGAGF TG KW F      D   Y+  NADE +PG   DR I+  
Sbjct: 186 DEVVKEVLDSGIRGRGGAGFPTGRKWMFTKDAPGDV-KYVACNADEGDPGAFMDRSILEG 244

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDV 159
           +PH +IE   IAS+A+GAH  ++YVR E+      LQ A+D+    GLLG N    G+D 
Sbjct: 245 DPHAVIEAMTIASYAVGAHQGYVYVRAEYPVAVNRLQIALDQAREYGLLGKNILGTGHDF 304

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI +  GAGA++CGEETALL S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +  
Sbjct: 305 DIEIRLGAGAFVCGEETALLTSIEGNRGEPRPRPPFPAVKGLFGKPTLLNNVETYANIAQ 364

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+R+GA+WYS  G E ++GTK+F++ G +     VE  M  T  E+IE+  GGI  G   
Sbjct: 365 IIRKGAAWYSAMGTEKSKGTKVFALGGKITNVGLVEIPMGTTLREIIEEIGGGIPDG-KA 423

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A   GG S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++        F
Sbjct: 424 FKAAQTGGPSGGCIPAQHIDTPI-DYESLAALGSMMGSGGLIVMDEDNCMVDVSKFYLNF 482

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR GT  +++++E++  G  +  +++ + +++ +++  ++CALG +A  
Sbjct: 483 TVDESCGKCTPCRVGTRKLLQLLEKITDGKGEMEDLEKIQDLATHMKSSSLCALGQSAPN 542

Query: 400 PIQGLIKNF 408
           P+   ++ F
Sbjct: 543 PVLSTLQYF 551


>gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 624

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 162/405 (40%), Positives = 242/405 (59%), Gaps = 7/405 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +   S+++ ++ G +  ++K L +   D IINE+  + LRGRGG GF  G KW+ + +  
Sbjct: 153 IDSTSITEYLATGGYYALEKALFDMTGDEIINEITEANLRGRGGGGFPAGRKWAQVKRQ- 211

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           + +  Y+V N DE +PG   DR IM  +PH +IEG +IA  A GA   +IYVR E+    
Sbjct: 212 NAKQKYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMIIAGIACGASEGYIYVRAEYPLAV 271

Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
             L+ A+++    GLLG N  LG  +  +I ++ GAGA++CGE +AL  S+EGK+G PR+
Sbjct: 272 SRLKRAIEQAKEFGLLGENI-LGSNFSFNIHINRGAGAFVCGEGSALTASIEGKRGMPRV 330

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPP     GL+  PT +NNVE+ A VP I++ GA WY   G E + GTK F+++G++   
Sbjct: 331 KPPRTVEQGLFDMPTVLNNVETFANVPLIIKNGADWYKSIGTEKSPGTKAFALTGNIENT 390

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M  T  E+I    GG+R G D   AV  GG S  CL    +    +D+D LK+ 
Sbjct: 391 GLIEIPMGTTLREVIFDIGGGMRNGAD-FKAVQIGGPSGGCLSEKDL-DLPLDFDSLKKA 448

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  ++VMD +T +++       F ++ESCG+C PCREGT  M+ ++ER+V+G  Q
Sbjct: 449 GAMIGSGGLVVMDSNTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILERIVEGNGQ 508

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+LL E++  I    +C LG AAA+P+   IKNFR   E  I
Sbjct: 509 DGDIELLLELADTISATALCGLGKAAAFPVVSTIKNFREEYEAHI 553


>gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 600

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/399 (38%), Positives = 235/399 (58%), Gaps = 4/399 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + D +  G +  + K+L       +++EVK+SGLRGRGGAGF TG KW            
Sbjct: 133 IEDYLVLGGYRAMKKVLTIMTPQAVVDEVKSSGLRGRGGAGFPTGTKWEGALHAKIKDKK 192

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ NADE +PG   DR I+   PH ++EG +I  +A G+   +IYVR E+      L+ 
Sbjct: 193 YVICNADEGDPGAFMDRSILEGNPHEVLEGMIICGYATGSDEGYIYVRAEYPMAIRRLKI 252

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ +  A+G LG+N    G++  I +  GAGA++CGE TAL+ S+EG +G PR K     
Sbjct: 253 AISQAEAAGYLGNNILNSGFNFHIKIKAGAGAFVCGEGTALMASIEGNRGMPRFKASRST 312

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+  PTT+NNVE+ A +PTI+ +GA WYS  G +N++GTK+FS++G V     VE  
Sbjct: 313 EKGLWDKPTTMNNVETFANIPTIIVKGALWYSSIGTDNSKGTKVFSLTGKVVNTGLVEVP 372

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M  +  ++I    GGI        AV  GG S  C+PA  +   + DY+ L ++G+ +G+
Sbjct: 373 MGTSLRQIIFDIGGGIPNNR-KFKAVQSGGPSGGCIPAKYLDLPV-DYNSLGKVGAMMGS 430

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++VMD +T ++        F K+ESCG+CTPCREGT  M+ ++ R+ +G  + ++ID 
Sbjct: 431 GGLVVMDDTTCMVDVARFFLNFTKNESCGKCTPCREGTLRMLEILTRICEGKGEPKDIDD 490

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           L  ++K I G ++C LG +A +P+   ++ FR   EE I
Sbjct: 491 LERLAKVICGTSLCGLGQSAPFPVLSTLRYFRHEYEEHI 529


>gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 617

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 166/405 (40%), Positives = 241/405 (59%), Gaps = 7/405 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           + D ++ G +  ++K L      IIN+VK SGLRGRGG GF TG KW F+     D+  Y
Sbjct: 152 IEDYIATGGYAGLEKALTMEPQEIINQVKISGLRGRGGGGFPTGTKWQFVADAVGDK-KY 210

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NADE +PG   DR ++  +PH ++EG +IA +AIGA+   IY R E+    + L  A
Sbjct: 211 IVCNADEGDPGAFMDRSVLEGDPHAIMEGMMIAGYAIGANEGVIYCRAEYPLAIKRLNMA 270

Query: 140 VDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           +      G+LG N  +G D +  + +  GAGA++CGEETALL S+EGK+G PR++PPFPA
Sbjct: 271 IAVAEEMGILGDNI-MGTDFNFKLRIKAGAGAFVCGEETALLNSIEGKRGMPRVRPPFPA 329

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + GL+  PT +NNVE+ A +P I+R G  WY+  G E ++G+K+F ++G +N     E  
Sbjct: 330 HKGLWQKPTCLNNVETFANIPFIVRNGGDWYASMGTEKSKGSKVFCLTGKINNTGLAEVP 389

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M IT  E++    GGI  G     AV  GG S  CLPA Q+   I DYD L   G+ +G+
Sbjct: 390 MGITLREVVFNIAGGIADG-KKFKAVQSGGPSGGCLPAEQLDLPI-DYDSLISGGAMMGS 447

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++VMD  T ++        F + ESCG+CTPCREGT  ++ ++ER+  G+    +ID 
Sbjct: 448 GGLVVMDEGTCMVDVAKFFLNFTQLESCGKCTPCREGTKRLLEILERICDGLGVPEDIDT 507

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           L  ++K I+   +CALG  A  P+   ++ FR   E  I++  RC
Sbjct: 508 LERLAKTIKTSALCALGQTAPNPVLTTLRYFRNEYEAHINE-KRC 551


>gi|307718325|ref|YP_003873857.1| NADH-quinone oxidoreductase subunit 1 [Spirochaeta thermophila DSM
           6192]
 gi|306532050|gb|ADN01584.1| NADH-quinone oxidoreductase subunit 1 [Spirochaeta thermophila DSM
           6192]
          Length = 418

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/387 (40%), Positives = 226/387 (58%), Gaps = 11/387 (2%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           +SRG +  + + L +    +I EVK+SGLRGRGGAGF TG+KW     V   +  Y+V N
Sbjct: 23  ISRGGFMGLRQALARPPAKVIAEVKSSGLRGRGGAGFPTGVKWE---SVQRHKEPYVVAN 79

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADE EPGT KDR IM H P+ LIEG  IA +A+GA   FIY+RGE+    + L  AV++ 
Sbjct: 80  ADEGEPGTFKDRYIMEHAPYLLIEGMTIAGYAVGARRGFIYIRGEYPAIAKGLIKAVEDA 139

Query: 144 YASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
                LG    LG  Y  DI +  G G+Y+ G+ETALL SL G +G P +KPP+P   GL
Sbjct: 140 RKHHFLGEKI-LGTDYSFDISLRMGGGSYVVGDETALLNSLMGNRGYPMMKPPYPTEEGL 198

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
           +G PT VNNVE++A VP +  +GASW++  G E++ G KLF +SG V+ P   E  M + 
Sbjct: 199 WGHPTLVNNVETLAYVPAVFTKGASWFTQIGPEHSPGLKLFCVSGDVHAPGLYELPMGVP 258

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
             EL+E   GG++G    L AV  GG++ P      +    +DYD L+  G  LG+ AV+
Sbjct: 259 LHELLEA-AGGVKG---RLKAVQIGGTAGPVYDDRALSFP-LDYDSLRAEGGALGSGAVV 313

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
           VM+ + ++ + +   + F+  ESCGQC PCR GT  +  +   ++ G  ++  +D + E+
Sbjct: 314 VMNHTRNMAEFLEVTTRFFSEESCGQCFPCRYGTRQLEFMARNIMMGKGKEEYLDEMREI 373

Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNF 408
              +   + C  G + A P+  ++  F
Sbjct: 374 VTTMSVASFCPFGKSVALPVGNVLDLF 400


>gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 596

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 161/413 (38%), Positives = 244/413 (59%), Gaps = 8/413 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q RI   N+  +   ++ + ++R  +  + K+L E   + +I EVK SGLRGRGGA
Sbjct: 110 FFKNQVRIALRNVGFIDPLNIEEYIARDGYSALAKVLTEMKPEEVIEEVKKSGLRGRGGA 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K   +   Y+V NADE +PG   DR IM  +PH++IEG +I  +AIGA
Sbjct: 170 GFPTGLKWELGRKAKGEE-KYIVCNADEGDPGAFMDRSIMEGDPHSVIEGMLIGGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEET 176
              F+Y+R E+    + L  A+++    G+LG N  LG D   DI +  GAGA++CGEET
Sbjct: 229 KKGFVYIRAEYPLAIKRLTVALEQARNYGILGENI-LGTDFSFDIEIRIGAGAFVCGEET 287

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EGK+G PR +PPFP N GL+G PT +NNVE+ A +P I+  GA W+S FG E +
Sbjct: 288 ALIASIEGKRGMPRPRPPFPVNSGLWGKPTVINNVETWANIPPIILNGAEWFSSFGTEKS 347

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F+++G +N    +E  M IT  E++    GG   G     AV  GG +  C+PA 
Sbjct: 348 KGTKVFALAGKINMTGLIEVPMGITLREVVYDI-GGGIPGGKKFKAVQIGGPAGGCIPAE 406

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +   I DY+ +  +G+ +G+  +IVMD    ++        F + ESCG+C PCR GT 
Sbjct: 407 YLDTPI-DYESITALGAIMGSGGLIVMDEDNCMVDVAKFFLSFTQDESCGKCVPCRVGTK 465

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            M+ +++++ KG   + ++  L E++  +   ++C LG  A  P+   +K FR
Sbjct: 466 RMLDILDKITKGEGTEEDLVELEELAYTVRNTSLCGLGKGAPNPVLTTLKYFR 518


>gi|325971421|ref|YP_004247612.1| NADH dehydrogenase (quinone)., glutamate synthase (NADPH)
           [Spirochaeta sp. Buddy]
 gi|324026659|gb|ADY13418.1| NADH dehydrogenase (quinone)., Glutamate synthase (NADPH)
           [Spirochaeta sp. Buddy]
          Length = 1050

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/404 (37%), Positives = 235/404 (58%), Gaps = 8/404 (1%)

Query: 19  SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           ++++ ++ G + + +K+L    RD ++ EVK S LRGRGGAGF TG+KW  M K  S +P
Sbjct: 158 NMAEYVAVGGYRSFEKVLGGMSRDEVLLEVKNSKLRGRGGAGFPTGLKWELMAKEPS-QP 216

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            +L+ NADE +PG   +R+ M  +PH LIEG +IAS+A  A    IYVR E+    + L+
Sbjct: 217 KFLICNADEGDPGAYMNRNEMESDPHMLIEGLLIASYATTAQEGIIYVRAEYPLAVQRLR 276

Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            A+++ YA GLLG N    K+ +D+ ++   GAGA++CGEETAL+ SLEG+ G+ R+KPP
Sbjct: 277 TAIEQAYAVGLLGDNILERKVRFDLSVV--EGAGAFVCGEETALIASLEGRAGRARVKPP 334

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FP+  G  G PTT+NN+E+   +P I+ +G++W++  G   + GTK+FS+ G V     V
Sbjct: 335 FPSQKGYLGRPTTINNLETWCNIPLIIGKGSAWFARIGNPASPGTKVFSLVGKVKNTGLV 394

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +      LI +  GG       + AV  GG S  C+PA      I DY+ L  +G+ 
Sbjct: 395 ELPLGEKLTTLIYEAGGGSVNPSKKIKAVQSGGPSGGCIPASLFNSTI-DYESLGALGAI 453

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  ++VMD    ++ +      F   ESCG CTPCREG    + ++ R+ +G  +  +
Sbjct: 454 MGSGGMVVMDSDNCMVDSARYFLEFTTKESCGTCTPCREGLSQALDLVSRICEGAGKLED 513

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +  L E+  +I    +C LG +A  P+   +K F    E  I +
Sbjct: 514 VKTLTELGNHISDTALCGLGQSAMNPVLTTLKYFPEEYESHIKR 557


>gi|282895630|ref|ZP_06303755.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Raphidiopsis brookii D9]
 gi|281199324|gb|EFA74189.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Raphidiopsis brookii D9]
          Length = 533

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 225/368 (61%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +  SGLRGRGGAG+ TG+KW  + K  S    +++ NADE +PG   DR ++  +P
Sbjct: 160 VVEVITKSGLRGRGGAGYPTGLKWGTVAK-SSGAKKFVICNADEGDPGAFMDRSVLESDP 218

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H ++EG  IA+++IGA+  +IYVR E+    + L+ A+ +    G+LG+N  +  +D  I
Sbjct: 219 HRVLEGMAIAAYSIGANQGYIYVRAEYPIAIKRLETAIRQAQRLGVLGTNIFESPFDFKI 278

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGAY+CGEETAL+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A +  I+
Sbjct: 279 EIRIGAGAYVCGEETALMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPII 338

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R GA W++  G E ++GTK+F+++G +     +E  M  T  E++E+  GGI  G     
Sbjct: 339 RNGAEWFANIGTEKSKGTKVFALAGKIRNTGLIEVPMGTTLGEIVEQMGGGIPDG-GMAK 397

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  C+PA      + DY+ L  +GS +G+  +IVMD+ST+++        F  
Sbjct: 398 AVQTGGPSGGCIPASAFTTPV-DYESLSALGSMMGSGGMIVMDQSTNMVDVARFFMEFCM 456

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  +  ++ R+ KG   + ++ LL E+   ++  ++C LG +A  P+
Sbjct: 457 DESCGKCIPCRVGTVQLHDLLTRISKGKGTQNDLHLLEELCDMVKYTSLCGLGQSAPNPV 516

Query: 402 QGLIKNFR 409
              ++ FR
Sbjct: 517 FSTLRYFR 524


>gi|209525022|ref|ZP_03273566.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328]
 gi|209494431|gb|EDZ94742.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328]
          Length = 537

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 141/372 (37%), Positives = 228/372 (61%), Gaps = 8/372 (2%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++ E+  SGLRGRGGAG+ TG+KW+ + K+   +  Y++ NADE +PG   DR ++  
Sbjct: 154 EEVVTEITKSGLRGRGGAGYPTGLKWATVAKMPPGQ-KYVICNADEGDPGAFMDRSVLES 212

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGY 157
           +PH ++EG  IA +A+GA   +IYVR E+      LQ A+ +     +LGS    S + +
Sbjct: 213 DPHRILEGMAIAGYAVGATQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSIDF 272

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           ++DI V  GAGA++CGEETAL+ S+ G +G PR +PP+PA  GL+ CPT +NNVE++  +
Sbjct: 273 NIDIRV--GAGAFVCGEETALIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNI 330

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             I+R GA WY+  G E ++GTK+FS++G +     +E  M IT  E++E+  GGI GG 
Sbjct: 331 APIIRNGADWYNQIGTEKSKGTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL 390

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             + AV  GG S  C+PA  +   + DY+ L  +GS +G+  ++VMD +T +++      
Sbjct: 391 -QVKAVQTGGPSGGCIPADFLDTPV-DYESLTRLGSMMGSGGMVVMDENTSMVQVAQFYM 448

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F + E+CG+C PCR GT  M +++ +L+   A   +++ L ++   ++  ++C LG  A
Sbjct: 449 EFCRGETCGKCIPCRVGTVQMYQLLTKLLNKQATSADLEKLKQLCDMVKATSLCGLGMTA 508

Query: 398 AWPIQGLIKNFR 409
             P+   ++ F 
Sbjct: 509 PNPVTSTLQYFE 520


>gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
 gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
          Length = 595

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 154/403 (38%), Positives = 235/403 (58%), Gaps = 5/403 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + +++ ++R  +  ++K+L E   D +I E+K SGLRGRGGAGF T  KW
Sbjct: 117 VLRNCGFINPEDINEYIARDGYAALEKVLLEMSPDEVIEELKRSGLRGRGGAGFPTWRKW 176

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F  +V SD   Y+V NADE +PG   DR ++  +PH+++E  +IA   +GAH  +IYVR
Sbjct: 177 LFTKQVESDM-KYVVCNADEGDPGAYMDRSVLEGDPHSVLEAMIIAGKTVGAHKGYIYVR 235

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+      L  A+++    GLLG +    G+  DI +  GAGA++CGEETALL S+EG 
Sbjct: 236 AEYPLAIRRLNIAIEQARELGLLGEDILGSGFSFDIEIRLGAGAFVCGEETALLASIEGS 295

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PPFPA  GL+G PT +NNVE++A +P I+ RG  W++  G E ++GTK+F+++
Sbjct: 296 RGTPRPRPPFPAVKGLWGKPTVINNVETLANIPVIILRGGDWFAKIGTETSKGTKVFALT 355

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    VE  M  T  +++    GGI  G     AV  GG S   +P   +   I DY
Sbjct: 356 GKVNNSGLVEVPMGTTLRDIVFNIGGGIPNG-KKFKAVQTGGPSGGVIPEEYLDTPI-DY 413

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L+++GS +G+  +IVMD    ++        F   ESCG+C PCR G   +  +++R+
Sbjct: 414 ENLQKLGSIMGSGGMIVMDEDDCMVNVAKFYLGFTVDESCGKCAPCRVGGRKLYNILDRI 473

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            KG     +ID + E+S  ++  ++C LG  A  P+   +  F
Sbjct: 474 SKGKGTLEDIDKIKEISHAMKRASLCGLGQTAPNPVLSTLHYF 516


>gi|239627948|ref|ZP_04670979.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239518094|gb|EEQ57960.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Clostridiales bacterium 1_7_47FAA]
          Length = 1032

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/380 (39%), Positives = 231/380 (60%), Gaps = 4/380 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           +++E+KASGLRGRGGAGF TG+KW + +  V  D   ++V NADE +PG   DR I+  +
Sbjct: 175 VVDEMKASGLRGRGGAGFPTGVKWEAGLKAVSEDGRKFMVCNADEGDPGAFMDRSILEGD 234

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160
           PH++IEG ++  +AIGA   ++YVR E+    E L  A+D+   +G+LG +    G+  D
Sbjct: 235 PHSIIEGMMLGGYAIGASKGYVYVRAEYPIAVERLGNAIDQARKAGILGEDIMGSGFSFD 294

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + +  GAGA++CGEET+LL S+EGK+G+PR KPPFP   GL+  PT +NNVE++A V  I
Sbjct: 295 LEIRIGAGAFVCGEETSLLASIEGKRGEPRQKPPFPFEKGLFESPTIINNVETLANVAPI 354

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           +  G+ WY GFG E + GTK+F+++G +     +E  M     ++I +  GG   G    
Sbjct: 355 ILNGSGWYHGFGTEKSAGTKVFALAGDIVNAGIIEVPMGTVLGDIIYRI-GGGIIGGKRF 413

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            A+  GG S  CL    +  ++ DY+ L ++G+ +G+  +IVM+  T ++        F 
Sbjct: 414 KAIQSGGPSGGCLTREHLNTSV-DYESLSKLGAIMGSGGLIVMNEDTCMVDTARYFMDFI 472

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCG+C PCR GT  M+ ++ER+ +G  +  ++DLL E++K I+   +C LG  A  P
Sbjct: 473 CDESCGKCLPCRNGTRRMLEILERITEGKGEPGDLDLLEELAKTIQQTAMCGLGQTAPNP 532

Query: 401 IQGLIKNFRPLIEERIDQYH 420
           +   ++ FR   E  I + H
Sbjct: 533 VLSTLRYFRSEYEAHIYEKH 552


>gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 597

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 163/390 (41%), Positives = 233/390 (59%), Gaps = 5/390 (1%)

Query: 29  WDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           +  ++K+L E   + +I+ +K SGLRGRGG GF TG+KW F  K  +D+  Y+  NADE 
Sbjct: 140 YKALEKVLTEMTPEAVIDTMKKSGLRGRGGGGFPTGVKWEFAAKQTADQ-KYVCCNADEG 198

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           +PG   DR ++  +PH++IE   IA FAIGA   FIYVR E+    + LQ A+DE    G
Sbjct: 199 DPGAFMDRSVLEGDPHSVIEAMSIAGFAIGATQGFIYVRAEYPIAVKRLQLAIDEAKEYG 258

Query: 148 LLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           +LG N    G+  ++ +  GAGA++CGEETAL+ S+EG +G+PR +PPFPA  GL+  PT
Sbjct: 259 ILGDNVLGTGHKFNLEIRLGAGAFVCGEETALMTSIEGHRGEPRPRPPFPAVKGLWEKPT 318

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            +NNVE+ A VP I+ +GA W+SG G E ++GTK+F++ G +N    VE  M  T  E++
Sbjct: 319 ILNNVETYANVPVIILKGAEWFSGIGTEKSKGTKVFALGGKINNTGLVEVPMGTTLREVV 378

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
               GGI  G     A   GG S  C+PA  +   I DYD L  +GS +G+  +IVMD  
Sbjct: 379 YDIGGGIPNG-KKFKAAQTGGPSGGCIPASHLDTPI-DYDSLIALGSMMGSGGLIVMDED 436

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
             ++        F   ESCG+C PCR GT  M+ ++ER+ +G  +  +I+ L  ++KNI+
Sbjct: 437 NCMVDIAKFFLEFTVDESCGKCPPCRIGTKRMLEILERITEGKGEAGDIEKLELLAKNIK 496

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
              +C LG  A  PI   +K FR   E  +
Sbjct: 497 ASALCGLGQTAPNPILSTLKYFRDEYEAHV 526


>gi|92115243|ref|YP_575171.1| NADH-quinone oxidoreductase, F subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91798333|gb|ABE60472.1| NADH dehydrogenase subunit F [Chromohalobacter salexigens DSM 3043]
          Length = 446

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/378 (42%), Positives = 225/378 (59%), Gaps = 7/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I E+K + LRGRGG GFS G+KWS   +       Y+V NADE EPGT KDR ++  +P
Sbjct: 55  LIEELKTANLRGRGGGGFSAGLKWSLTVQGEGIPRGYIVCNADEMEPGTFKDRLLLEQQP 114

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H LIEG ++A FA  A+  +I++RGE++    ++Q A+DE  A+G LG + +  G+D DI
Sbjct: 115 HLLIEGMILAGFANNAYQGYIFMRGEYVDAARTVQRALDEARAAGWLGRDVAGSGWDFDI 174

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +H GAG YICGEETAL+ SLEGK+  PR KPPFP   G +G PT VNNVE++  VP+I+
Sbjct: 175 ALHTGAGRYICGEETALINSLEGKRANPRAKPPFPGQSGAWGKPTVVNNVETLCNVPSIV 234

Query: 222 RRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
             GA WY G   G+  + GTKL+ +SG V  P   E  M     EL+E+  GG+R G   
Sbjct: 235 LHGADWYQGLSQGKSGDGGTKLYGVSGKVKRPGLWELPMGTPATELMER-AGGMREG-HT 292

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L   +PGG S   L    +  A +D+D +   GS LGT  + V+     ++     L  F
Sbjct: 293 LKTWLPGGGSTGFLLPEHLELA-LDFDTIGNAGSRLGTGLIAVVADDQSVVSLTRNLEEF 351

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAA 398
           +  ESCG CTPCR+G  W +++++ L  G  ++ +IDLL  ++ ++  GRT CA    AA
Sbjct: 352 FARESCGWCTPCRDGLPWSVKLLQALEAGEGERGDIDLLESLAVDLGPGRTFCAHAPGAA 411

Query: 399 WPIQGLIKNFRPLIEERI 416
            P+   I  FR   E  +
Sbjct: 412 MPLASAIHYFRAEFERGV 429


>gi|91203805|emb|CAJ71458.1| similar to NADH:ubiquinone oxidoreductase 51 kDa subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 594

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/403 (37%), Positives = 236/403 (58%), Gaps = 9/403 (2%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           ++  + +G ++ V K+L       +I E+K SGLRGRGGAGF TG+KW F      ++  
Sbjct: 128 IAPYIKKGGYEAVKKVLGTMSPQQVIEEIKTSGLRGRGGAGFPTGLKWQFARNSTGEK-K 186

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ NADE +PG   DR ++  +PH +IEG +I  +AIGA   ++YVR E+    + L+ 
Sbjct: 187 YMICNADEGDPGAFMDRAVLEGDPHKVIEGLIIGGYAIGAEHGYVYVRAEYPLAIKRLKL 246

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A+ +     LLG N   S+  + + I    GAGA++CGEETAL+ S+EG++G PRLKPPF
Sbjct: 247 AISQATEKNLLGHNILNSEFSFHLKI--KEGAGAFVCGEETALIASIEGERGHPRLKPPF 304

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE++A VP I+  GA  Y+ +G E ++GTK+FS++G +     +E
Sbjct: 305 PAGSGLWGYPTNINNVETLASVPWIINNGAKIYASYGTEKSKGTKVFSLAGKIARGGLIE 364

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M     ++I    GG   G     AV  GG S  C+P  ++    +DY+ +   G+ +
Sbjct: 365 VDMGTPLRDIIYTIGGGTSSG-KPFKAVQLGGPSGGCVPE-RLLDTPVDYESISVTGAIM 422

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  ++VMD  T I+        F ++ESCG+CT CR GT  ++ ++E++ +G     ++
Sbjct: 423 GSGGMVVMDDDTCIVDVAKFFLTFTQNESCGKCTFCRIGTKRLLEILEKITEGRGGMADL 482

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           D L  +S+ ++  ++C LG  A  PI   +K F+    E I +
Sbjct: 483 DELESLSEKVKDLSLCGLGKTAPNPIMTTLKYFKDEYVEHIKE 525


>gi|158319328|ref|YP_001511835.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158139527|gb|ABW17839.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 582

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 160/426 (37%), Positives = 252/426 (59%), Gaps = 12/426 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
           +L+ Q R+   N   +  +++ + ++ G ++ + K LE    + +I E+K SGL+GRGGA
Sbjct: 95  ILSKQKRVALKNCGIIDPENIDEYIATGGYEAMKKCLETMTPEDVIEEIKISGLKGRGGA 154

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW+   K       Y+V NADE +PG   DR ++  +PH LIEG +I  +AIGA
Sbjct: 155 GFPTWFKWN-AAKQSPGSVKYVVCNADEGDPGAFMDRSVLEGDPHNLIEGMIINGYAIGA 213

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG---YDVDIIVHHGAGAYICGEE 175
           +   IYVR E+      L  A++E  + G LG N  LG   +D D+ +  GAGA++CGEE
Sbjct: 214 NEGIIYVRAEYPLAINRLNHAIEEARSRGYLGKNI-LGLDKFDFDLRIKAGAGAFVCGEE 272

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ESL+G++G PRLKPPFPA  G +  PT +NNVE+ A V  I+  G + +   G EN
Sbjct: 273 TALIESLQGERGMPRLKPPFPAQRGYWDKPTNINNVETFANVAWIINNGGAAFGHMGTEN 332

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           ++GTK+F+++G +     VE  M IT  +++    GGI+G  +   AV  GG S  C+PA
Sbjct: 333 SKGTKVFALTGKIKKGGLVEVPMGITLRDIVYDIGGGIKGDKE-FKAVQMGGPSGGCIPA 391

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
            ++    +DY+ + ++G+ +G+  ++VMD +T ++        F + ESCG+C  CR GT
Sbjct: 392 -ELLDTSVDYESIAKIGAIMGSGGMVVMDETTCMVDMARFFLDFTRKESCGKCIHCRIGT 450

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             M+ ++ R+ +G  ++ +I+LL ++ + I+  ++C LG  A  P+   I+ FR   EE 
Sbjct: 451 KRMLEILTRICEGEGKEGDIELLEDLGEKIKEGSLCGLGQTAPNPVLSTIRYFR---EEY 507

Query: 416 IDQYHR 421
               HR
Sbjct: 508 ESHIHR 513


>gi|146295664|ref|YP_001179435.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145409240|gb|ABP66244.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 584

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 156/412 (37%), Positives = 242/412 (58%), Gaps = 6/412 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
           ML  Q RI   N   +  + + D +  G ++ + K+L     + +I E+K SGLRGRGGA
Sbjct: 98  MLKSQVRIALKNCGRINPEDIDDYIKNGGYEALKKVLTSMTPEEVIEEIKISGLRGRGGA 157

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW    K   D   Y+V NADE +PG   DR I+  +PH ++EG  IA++AIGA
Sbjct: 158 GFPTWFKWDAARKASGDI-KYVVCNADEGDPGAFMDRSILEGDPHAVLEGMTIAAYAIGA 216

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++     LLG+N     +  DI +  GAGA++CGEETA
Sbjct: 217 KEGYIYVRAEYPLAIKRLEIAIEQARNRNLLGNNILNTNFSFDIKLKKGAGAFVCGEETA 276

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PRLKPPFPA  GL+G PT +NNVE+ A VP I+  G   ++  G E ++
Sbjct: 277 LIASIEGERGMPRLKPPFPAQSGLWGRPTNINNVETYANVPWIITNGGKAFASLGTEKSK 336

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M ++  E+I    GGI+       AV  GG S  C+PA  
Sbjct: 337 GTKVFALAGKIKRGGLVEVPMGMSLREVIYNIGGGIKDD-KAFKAVQMGGPSGGCIPADL 395

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   + DY+ + + G+ +G+  +IVMD +T ++        F   ESCG+CT CR GT  
Sbjct: 396 IDTPV-DYESITKTGAIMGSGGMIVMDETTCMVDIARFFLEFTCKESCGKCTYCRVGTRR 454

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           M+ +++R+  G  +  +++LL E++ +++  ++C LG  A  P+   ++ F+
Sbjct: 455 MLEILDRICNGEGRDGDLELLEELAVSVKDGSLCGLGQTAPNPVLTTLRYFK 506


>gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 623

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 242/419 (57%), Gaps = 6/419 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ + ++ G +  + K++       +I+EV  SGLRGRGGA
Sbjct: 136 FLNQQTRIVLENCGKIDAESIEEYIAVGGYQALAKVMGSMSPQEVIDEVTKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS + +  +++  Y+V N DE +PG   D  +M  +P+ +IEG  IA++A+GA
Sbjct: 196 GFPAGKKWSQVARQ-AEKTRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++    GLLG N    G +  + ++ GAGA++CGE +A
Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEKYGLLGDNILNSGVNFHLHINRGAGAFVCGEGSA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+G PT +NNVE+ A VP I+ +GA W+   G E + 
Sbjct: 315 LTASIEGNRGMPRVKPPRTVEKGLWGKPTVLNNVETYANVPKIILQGADWFRTIGTEGSP 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FS++G +     +E  M  T   +I    GG++ G      V  GG S  CL   Q
Sbjct: 375 GTKTFSLTGSIENTGLIEVPMGTTLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLILDQ 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A +D+D +K++ + +G+  ++VMD +T +++       F + ESCG+C PCREGT  
Sbjct: 434 LD-APLDFDSVKKLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M+ ++ER+V G  +  ++D L E++  ++   +C LG +A  P+   +K FR   EE I
Sbjct: 493 MLEILERIVDGKGEMSDLDELEELANMVQNMALCGLGKSAPLPVISTLKRFRNEYEEHI 551


>gi|258516625|ref|YP_003192847.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257780330|gb|ACV64224.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 619

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 160/408 (39%), Positives = 242/408 (59%), Gaps = 6/408 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62
           Q R  T+  G    +S+ D ++ G ++ ++KIL    +  +I+E+K SGLRGRGG GF T
Sbjct: 137 QVRTVTSRLGRTNPESIVDYIATGGYEGLEKILSGMTQQQVIDEIKTSGLRGRGGGGFPT 196

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F      D+  Y+V NADE +PG   DR ++  +PH+++EG +IA +AIGA   +
Sbjct: 197 GMKWQFTHNSPGDK-KYIVCNADEGDPGAFMDRSVLEGDPHSVLEGMIIAGYAIGADEGY 255

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+      L  A+ +    G+LG N    G++  + +  GAGA++CGEETALL S
Sbjct: 256 IYVRAEYPLAIHRLNLAIAQAEEIGMLGENILDTGFNFKLRIKAGAGAFVCGEETALLTS 315

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG +G PR++PPFPA  GL+  PT +NNVE+ A VP I+R+G  WY+  G E ++G+K+
Sbjct: 316 IEGNRGMPRVRPPFPAVKGLWEKPTNLNNVETYANVPFIIRKGGEWYASMGTEKSKGSKV 375

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ++G +     VE  M I+  ++I K  GGI+       AV  GG S  CLP  ++   
Sbjct: 376 FCLTGKIKNTGLVEVPMGISVRDIIYKVGGGIQDD-KKFKAVQAGGPSGGCLPEEKLDLP 434

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           + DYD L   G+ +G+  ++VMD +T ++        F + ESCG+CTPCREGT  M+  
Sbjct: 435 V-DYDSLNAAGAIMGSGGLVVMDETTCMVDVARFFLNFTQAESCGKCTPCREGTKRMLET 493

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + R+ +G  +  +I+ L  + + I    +C LG   A PI   ++ F+
Sbjct: 494 LTRICEGTGKPEDIETLERMGRVITKTALCGLGQTCANPILSTMRYFK 541


>gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum]
          Length = 596

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 165/425 (38%), Positives = 247/425 (58%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+     GL   + + ++++   +  + K+L E   + +INE+K SGLRGRGG 
Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVINEIKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR ++  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGIKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + LQ A+D+    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ GK+G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W++  G E ++
Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E+I +  GGI  G     A   GG S  C+PA  
Sbjct: 349 GTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIPNG-KKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I DYD L  +GS +G+  +IVMD    ++        F   ESCG+C+PCR GT  
Sbjct: 408 LDTPI-DYDSLLNIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ ++  G  ++ +I+ L  ++ +I+  ++C LG  A  P+   I+ FR   E  I 
Sbjct: 467 MLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTIRYFRDEYEAHIK 526

Query: 418 QYHRC 422
           +  RC
Sbjct: 527 E-KRC 530


>gi|323702552|ref|ZP_08114215.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532526|gb|EGB22402.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 649

 Score =  279 bits (713), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 153/404 (37%), Positives = 239/404 (59%), Gaps = 5/404 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + ++D ++ G + ++ ++L+    + +I EV+ SGLRGRGGAGF TG KW
Sbjct: 171 LLANCGYIDPEQIADYVAVGGYRSLVQVLQHMAPEQVIEEVQQSGLRGRGGAGFPTGKKW 230

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           +   +   D   Y++ NADE +PG   DR ++  +PH ++EG +IA +A+G+   +IY R
Sbjct: 231 AAARRAAGDI-KYIICNADEGDPGAFMDRSVLEGDPHAVLEGMLIAGYAVGSTVGYIYCR 289

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + L+ A+++    GLLG N    G+D DII+  GAGA++CGE TAL  S+EG+
Sbjct: 290 AEYPLAIKRLKIAIEQARRWGLLGRNILNSGFDFDIILKEGAGAFVCGEGTALQASIEGQ 349

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR+KPP     GL+  PT +NNVE++A +P I+R GA  +   G  N+ GTK+F++S
Sbjct: 350 RGMPRVKPPRSTEKGLWQKPTVLNNVETLANIPLIIRIGAERFRQIGTANSPGTKIFALS 409

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P  VE  M +T  E+I    GGIR G     AV  GG S  CL    +   + D+
Sbjct: 410 GAVANPGLVEVPMGVTLREVIFGIGGGIRDG-KKFKAVQLGGPSGGCLTEQHLDLPV-DF 467

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L   G+ +G+  ++VMD +T ++        F + ESCG+CTPCREGT  M+ ++ER+
Sbjct: 468 DSLTSAGATVGSGGMVVMDENTCMVDVARFFLAFTQAESCGKCTPCREGTKRMLEILERM 527

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            +G A   ++  L  + + ++  ++C LG A   P+   +K FR
Sbjct: 528 CQGRAGMDDLADLERLCRVVKTTSLCGLGQACPNPVLSTLKYFR 571


>gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 597

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 161/390 (41%), Positives = 233/390 (59%), Gaps = 5/390 (1%)

Query: 29  WDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           +  ++K+L E   + +I+ +K SGLRGRGG GF TGMKW F  K  +++  Y+  NADE 
Sbjct: 140 YKALEKVLTEMTPEAVIDTMKKSGLRGRGGGGFPTGMKWDFAAKQTAEQ-KYVCCNADEG 198

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           +PG   DR ++  +PH++IE   IA FAIGA   +IYVR E+    + LQ A+D+    G
Sbjct: 199 DPGAFMDRSVLEGDPHSVIEAMSIAGFAIGATQGYIYVRAEYPIAVKRLQMAIDQAVEYG 258

Query: 148 LLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           +LG N    G+  ++ +  GAGA++CGEETAL+ S+EG +G+PR +PPFPA  GL+G PT
Sbjct: 259 ILGDNVLGTGHKFNLEIRLGAGAFVCGEETALMTSIEGHRGEPRPRPPFPAVKGLWGKPT 318

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            +NNVE+ A VP I+ +GA W+SG G E ++GTK+F++ G +N    VE  M  T  E++
Sbjct: 319 ILNNVETYANVPVIILKGADWFSGIGTEKSKGTKVFALGGKINNTGLVEVPMGTTLREVV 378

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
               GGI  G     A   GG S  C+P   +   I DYD L  +GS +G+  +IVMD  
Sbjct: 379 YDIGGGIPKG-KKFKAAQTGGPSGGCIPTEHLDTPI-DYDSLIALGSMMGSGGLIVMDED 436

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
             ++        F   ESCG+C PCR GT  M+ ++ER+ +G  +  +I+ L  ++KNI+
Sbjct: 437 NCMVDIAKFFLEFTVDESCGKCPPCRIGTKRMLEILERITEGKGEAGDIEKLELLAKNIK 496

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
              +C LG  A  PI   +K FR   E  +
Sbjct: 497 ASALCGLGQTAPNPILSTLKYFRDEYEAHV 526


>gi|325000957|ref|ZP_08122069.1| respiratory chain oxidoreductase [Pseudonocardia sp. P1]
          Length = 499

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 157/403 (38%), Positives = 234/403 (58%), Gaps = 10/403 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           R+   +  +   SL D  SRG +  + + ++ G   +I E+K S L GRGGA F TG+KW
Sbjct: 81  RLLRRVGVVDPSSLDDYRSRGGYAALRRAVDLGPTRVIAELKDSSLTGRGGAAFPTGVKW 140

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             + +   +RPH+LV NADESEPGT KDR +M  +P  L+E   IA +  GA    +Y+R
Sbjct: 141 EGVAQ-APERPHHLVCNADESEPGTFKDRVLMEGDPFGLVEAMTIAGYVTGATVGHLYIR 199

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+      LQ A+    A GLLG +    G+  DI +  GAGAYICGEETALLES+EG 
Sbjct: 200 GEYPLATRRLQDAIAAARARGLLGDDVMGEGFAFDIDLRRGAGAYICGEETALLESIEGY 259

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G+PR KPPFPA+VGL+G PT +NNVE++  V  +L  G   ++  G   + G+KLF +S
Sbjct: 260 RGEPRNKPPFPASVGLFGKPTAINNVETLYNVLEVLDIGGQAFAVVGGGRSTGSKLFCVS 319

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E     T  +L++   GG+RG   +L  V+ GG++   +  G +   ++  
Sbjct: 320 GAVGTPGVYEVDFGTTLRQLLD-LAGGVRG---SLRTVLLGGAAGGFVLPGDLD-VVLTL 374

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G +++G+ LG+  V+V D   D+   + R++ F++ ESCGQC PCR GT      + RL
Sbjct: 375 EGARDIGATLGSGVVLVFDEDADLTGTLRRIAAFFRDESCGQCVPCRVGTVRQEEALARL 434

Query: 366 VKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
            +     +++ EI LL ++++ +   +IC LG  A   +   I
Sbjct: 435 ERNAPIGSRETEIALLDDLARVMRDASICGLGQTAPSAVTSAI 477


>gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
 gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
          Length = 596

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 162/417 (38%), Positives = 244/417 (58%), Gaps = 6/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +++ + ++ G ++ + K + +     +++EVK SGLRGRGG GF TGMKW
Sbjct: 119 VLANCGAINPEAIEEYIAVGGYEALAKAVTQMTPQEVVDEVKKSGLRGRGGGGFPTGMKW 178

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F     SD+  Y++ NADE +PG   DR ++  +PH ++EG  I  +A+GA   +IYVR
Sbjct: 179 QFAKNSESDK-KYVICNADEGDPGAFMDRSVLEGDPHRVLEGMAICGYAMGADEGYIYVR 237

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + L+ A+ +    GLLG +  +  +   I +  GAGA++CGEETAL+ S+EGK
Sbjct: 238 AEYPLAIKRLRTAIAQAEEMGLLGEHIFESDFSFTIHIKEGAGAFVCGEETALMASIEGK 297

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PPFPA  GL+G PT +NNVE+ A V  I+  GA WY   G E ++GTK+F+++
Sbjct: 298 RGMPRPRPPFPAVSGLWGKPTNINNVETFANVAQIIVNGADWYCRLGTEKSKGTKVFALT 357

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G +N     E  M I+  E+I    GGI  G     AV  GG S  CLP   M    +DY
Sbjct: 358 GKINNTGLAEVPMGISMREIIYDIGGGITNG-KKFKAVQIGGPSGGCLPE-SMLDLPVDY 415

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L   G+ +G+  ++VMD  T ++        F + ESCG+CTPCREGT  M+ ++ R+
Sbjct: 416 DSLIAAGAMMGSGGLVVMDEDTCMVDVAKFFLNFTQSESCGKCTPCREGTKRMLEILTRI 475

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +G  ++ +I+LL  ++KNI+   +C LG  A  P+   +K FR   E  I +  RC
Sbjct: 476 TEGQGREGDIELLENLAKNIKETALCGLGQTAPNPVLSTLKYFRDEYEAHIKE-KRC 531


>gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 229/393 (58%), Gaps = 6/393 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +++ D +    +  +DK L+   + ++  +K SGLRGRGGAGF TG KW       + + 
Sbjct: 148 ENIDDYVLADGYTALDKALKMTPEEVVEIIKKSGLRGRGGAGFPTGKKWEIALHNKAPK- 206

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V NADE +PG   DR I+  +PH+++E   +  +AIGA    +Y+R E+    + L 
Sbjct: 207 KYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAVCGYAIGAEYGLVYIRAEYPNAMKILA 266

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ +    G LG N     ++ DI + +GAGA++CGEETAL+ S++GK+G+P  KPPFP
Sbjct: 267 KAIKDAKNHGFLGKNIYNTNFNFDIQLKYGAGAFVCGEETALIRSMQGKRGEPVNKPPFP 326

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  G    PT VNNVE++A +P I+++GA W+  FG EN+ GTK+F+++G +N    +E 
Sbjct: 327 AERGYKNSPTNVNNVETLANIPVIIKKGAEWFRSFGTENSPGTKVFALAGKINNTGLIEV 386

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  T  E+I +  GGI+ G     AV  GG S  CL    +   I D+D L   GS +G
Sbjct: 387 PMGTTLREIIYEIGGGIKNG-KKFKAVQTGGPSGGCLTMDDLDTPI-DFDNLVAKGSMMG 444

Query: 317 TAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           +  +I+MD   + + A+ +  + F   ESCG+CTPCR G   ++ +++R+  G   + ++
Sbjct: 445 SGGMIIMDED-NCMPAVAKFYLDFTVDESCGKCTPCRIGNKRLLEILKRITDGEGTEDDL 503

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           D L E+S  I+   +C LG  A  P+   ++ F
Sbjct: 504 DTLKELSLIIKDSALCGLGQTAPNPVLSTLEKF 536


>gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 628

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/368 (42%), Positives = 228/368 (61%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++ EVK +GLRGRGG GF TG+KW    K  +  P Y++ NADE +PG   DR I+  +P
Sbjct: 186 VVAEVKEAGLRGRGGGGFPTGIKWETAAKQQTG-PKYMICNADEGDPGAFMDRSILEGDP 244

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H+++EG  IA +AIGA+  FIYVR E+      +QAA+ +    GLLG +    G+  DI
Sbjct: 245 HSVLEGMAIAGYAIGANHGFIYVRAEYPIAVRRVQAAIKQARDYGLLGEDLFGTGFSFDI 304

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V  GAGA++CGEETAL+ S+EGK+G P  KPPFPA  GL+G PT +NNVE++A VP I+
Sbjct: 305 SVRLGAGAFVCGEETALMNSVEGKRGMPNPKPPFPAVSGLWGQPTVINNVETLANVPIIM 364

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +GASWY+  G E ++GTK+F++ G V     VE  M IT  ++I +  GGI GG     
Sbjct: 365 LKGASWYASIGTEKSKGTKVFALGGKVVNTGLVEVPMGITLRDVIYEIGGGIPGG-KAFK 423

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  CL +  +   I DYD L  +GS +G+  ++VMD  T ++        F +
Sbjct: 424 AVQTGGPSGGCLTSEHLDRPI-DYDTLLSLGSMMGSGGMLVMDEETCMVDVARYYLDFTR 482

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  ++ ++E++ +G     +++ L ++S+ I+  ++C LG  A  P+
Sbjct: 483 DESCGKCAPCRIGTKRLLEILEKITEGKGTMEDLNALEDLSEQIKAASLCGLGQTAPNPV 542

Query: 402 QGLIKNFR 409
              +K FR
Sbjct: 543 LSTLKYFR 550


>gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 596

 Score =  278 bits (710), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 165/425 (38%), Positives = 245/425 (57%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+     GL   + + ++++   +  + K+L E   + +I E+K SGLRGRGG 
Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEQVIAEIKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR ++  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGIKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + LQ A+D+    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ GK+G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W++  G E ++
Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E+I +  GGI  G     A   GG S  C+PA  
Sbjct: 349 GTKVFALGGKINNTGLVEVPMGTTLREIIFEIGGGIPNG-KKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I DYD L  +GS +G+  +IVMD    ++        F   ESCG+C+PCR GT  
Sbjct: 408 LDTPI-DYDSLLNIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ ++  G  ++ +I+ L  ++ +I+   +C LG  A  P+   IK FR   E  I 
Sbjct: 467 MLELLNKITSGKGEEGDIEKLEALANSIKASALCGLGQTAPNPVLSTIKYFRDEYEAHIK 526

Query: 418 QYHRC 422
           +  RC
Sbjct: 527 E-KRC 530


>gi|291285962|ref|YP_003502778.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
 gi|290883122|gb|ADD66822.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
          Length = 597

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 161/400 (40%), Positives = 235/400 (58%), Gaps = 3/400 (0%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +SL D +  G ++ + K +    + +I EVKASGLRGRGG GF TG+KW+F     ++  
Sbjct: 131 ESLEDYVKLGGYEAIKKAITMKPEEVIEEVKASGLRGRGGGGFPTGLKWTFCRGAKTEDH 190

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE +PG   DR I+   PH +IEG +IA +AIG    +IY R E+    E + 
Sbjct: 191 KYLICNADEGDPGAFMDRSIIEGNPHAVIEGMLIAGYAIGCDEGYIYCRAEYPLAIERVI 250

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ +  A+G LG       Y+  + +  GAGA++CGEETAL+ S+EG++G PR +PPFP
Sbjct: 251 KAIKDAEAAGYLGKGVFSSDYNFKLKLKEGAGAFVCGEETALIASIEGERGMPRPRPPFP 310

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  P+ VNNVE+ A +P I+ +G+ WYSG G E ++GTK+F++SG +     VE 
Sbjct: 311 AVRGLWQKPSNVNNVETFANLPNIILKGSGWYSGIGTEKSKGTKIFALSGKIKSSGLVEV 370

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M IT  ELI    GGI        AV  GG S  CL    +   I DYD L   G+ +G
Sbjct: 371 PMGITVRELIFDVGGGIPKK-RKFKAVQLGGPSGGCLTPDHLETPI-DYDSLIAAGAMMG 428

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  V+VMD +  ++        F + ESCG+C PCR GT  M+ +++R+  G  ++ +I+
Sbjct: 429 SGGVVVMDETNCMVNVAQFFLTFTQRESCGKCIPCRIGTKTMLDILDRITTGKGREGDIE 488

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           LL ++ ++I+  ++C LG  A  P+   IK FR   E  I
Sbjct: 489 LLQQIGEDIKTSSLCGLGQTAPNPVLTTIKYFRHEYEAHI 528


>gi|124514282|gb|EAY55796.1| NADH dehydrogenase, subunit F [Leptospirillum rubarum]
          Length = 1048

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/405 (37%), Positives = 234/405 (57%), Gaps = 10/405 (2%)

Query: 19  SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D +  G ++ +  ++  +  D +I+ +  SGLRGRGGAGF TGMKW F  +   D  
Sbjct: 134 SIDDYLKTGGYNALKAVIAGETPDSVIDTLIRSGLRGRGGAGFPTGMKWKFTRQAQGDV- 192

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESL 136
            Y+V NADE +PG   DR ++  +PH++IEG +I +FAIG A   +IY R E+      L
Sbjct: 193 KYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMIIGAFAIGNARQGYIYCRAEYPHAIRLL 252

Query: 137 QAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           + A+ +    G LG     S L + ++I    GAGAY+CGEETALL S+ G +G P  KP
Sbjct: 253 KKAIAQAMERGYLGERILGSDLSFHLEI--KEGAGAYVCGEETALLASIMGDRGMPWPKP 310

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++  PT +NNVE++A +P I+  GA W++ +G E  +GTK F+++G +     
Sbjct: 311 PFPAQKGIWNNPTLINNVETLANIPHIILGGAEWFASYGTEKTKGTKTFALTGKIKRTGL 370

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +E +   T  E++ +  GG+  G     A   GG S  C+P   +   I D++ L   G+
Sbjct: 371 IEVAAGTTLKEIVYEIAGGM-SGHKKFKAAQLGGPSGGCIPVDLIDTPI-DFESLISAGA 428

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +G+  +IV+D +  I+        F K ESCG+CTPCR+GT  M+ +++R+  G  + +
Sbjct: 429 IMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKVMLDMIQRISDGRGEMK 488

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++D L  +S  ++  ++C LG AA  P+   I+ FR   E+ I +
Sbjct: 489 DLDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIKR 533


>gi|326204154|ref|ZP_08194014.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325985665|gb|EGD46501.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 429

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 240/415 (57%), Gaps = 6/415 (1%)

Query: 6   DRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64
           D++ +  +G ++  S+ + +  G ++ + K +       I E+K + L GRGGA + TG+
Sbjct: 2   DKVLSARFGKIKPDSVEEYIQAGGYEGLKKTMSMEHLDAIEEIKKANLFGRGGAAYPTGI 61

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KW          P Y+V NADE EPGT KD+ I+  +P  LIEG  I ++ +GA   +IY
Sbjct: 62  KWE-QAYAIQRGPKYMVCNADEGEPGTFKDKHILAEDPFELIEGMTIGAYIMGAKEGYIY 120

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           +RGE+   +  +++A++    +G LG N   + G+D ++ V  GAGAY+CGE TAL+ES+
Sbjct: 121 IRGEYAAIQRIVKSAIENAKKAGYLGKNILGREGFDFELKVVSGAGAYVCGENTALVESI 180

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK G+PR KPP+  N GLY  PT +NNVE+ + +P I++ G   +S  G E + GTKL 
Sbjct: 181 EGKTGRPRQKPPYIKNCGLYQMPTILNNVETYSCIPWIIKDGGDKFSSMGTEFSGGTKLM 240

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG+VN     E    +T  ELI    GG++ G   L  V  GGSS  C P   +   I
Sbjct: 241 CLSGNVNNRGVYEIPFGLTLRELIFNLGGGMKDG-RKLKFVHLGGSSGSCFPESMIDTKI 299

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
             YD LK+ G  LG+ AV+V+D +   +  +  +  F++ ESCG+CTPCREG   ++ ++
Sbjct: 300 CYYD-LKKAGFSLGSGAVLVVDDTHCAVDYLKTVMEFFEEESCGKCTPCREGNLRLVEIL 358

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +++ +G A   + + +  +++ ++  + C LG +A  P+  L+K F     E I+
Sbjct: 359 DKMTEGTATMADFNKMKSLAQTMKTTSFCGLGQSAPMPLITLVKYFEEEFLEHIN 413


>gi|254413257|ref|ZP_05027028.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Microcoleus chthonoplastes PCC 7420]
 gi|196179877|gb|EDX74870.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Microcoleus chthonoplastes PCC 7420]
          Length = 538

 Score =  278 bits (710), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 250/410 (60%), Gaps = 11/410 (2%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI     G +  + + + ++ G + ++ K++ +     +++++  SGLRGRGG G+ T
Sbjct: 116 QMRIVRETSGKIDPERIEEYIAAGGYQSLYKVIHDMTPAEVVDQISKSGLRGRGGGGYPT 175

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW+ M K+  ++  Y++ NADE +PG   DR ++  +PH ++EG  IA +A+GA  AF
Sbjct: 176 GLKWATMAKMPGEQ-KYVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAGYAVGATQAF 234

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179
           IYVR E+    + LQ A+ +     LLGS    S   + VDI +  GAGA++CGEETAL+
Sbjct: 235 IYVRAEYPLAIDRLQKAIKQAKRLSLLGSQIFGSPFDFKVDIRI--GAGAFVCGEETALI 292

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG +G PR +PP+PA  GL+GCPT +NNVE+ A +  I+R GA WY+  G E ++GT
Sbjct: 293 ASVEGGRGLPRPRPPYPAQSGLWGCPTLINNVETFANIAVIIREGAEWYANIGTEKSKGT 352

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F+++G +     +E  M IT  E++E+  GG+  G   + AV  GG S  C+PA  + 
Sbjct: 353 KVFALTGKIRNNGLIEVPMGITLREIVEEMGGGVPDG--EVKAVQTGGPSGGCIPASLLD 410

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             + DYD L  +GS +G+  ++VMD +T +I+       F + E+CG+C PCR GT  M 
Sbjct: 411 TPV-DYDSLVTIGSMMGSGGMVVMDETTSMIEVAQFYMEFCRGETCGKCIPCRVGTVQMY 469

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + + +++KG A  R+I+ L ++   ++  ++C LG  A  P+   ++ FR
Sbjct: 470 QALTKILKGEATMRDIEQLEQLCGMVKDTSLCGLGQTAPNPVMSTLRYFR 519


>gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
 gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
          Length = 622

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/418 (37%), Positives = 237/418 (56%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + +  +++ G +  ++K L E   + +I  +  S LRGRGGAGF TG KW
Sbjct: 143 VLKNCGHIDAEHIGGALAVGAYAGIEKALFEMTPEAVIQTIYDSNLRGRGGAGFRTGRKW 202

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             +     ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+ A   +IYVR
Sbjct: 203 QQVASQ-KEKIRYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMMIAAYAVQAQEGYIYVR 261

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184
            E+    E L+ A+ +  A GLLG N  LG +    +H   GAGA++CGE +AL  S+EG
Sbjct: 262 AEYPLAIERLKTAISQAEAIGLLGDNI-LGTNFSFHLHINRGAGAFVCGEGSALTASIEG 320

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+G PR+KPP     GL+  PT +NNVE+ A VP I+  GA W+ G G   + GTK F++
Sbjct: 321 KRGMPRVKPPRTVEQGLWARPTVLNNVETYANVPMIVTNGADWFKGIGTPESPGTKAFAL 380

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G+V     +E  M IT  E+I    GGI+       AV  GG S  CL   Q+    MD
Sbjct: 381 TGNVRNTGLIEVPMGITLREVIYDIGGGIQND-KKFKAVQIGGPSGGCLTEDQLDSK-MD 438

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D L ++G+ +G+  +++MD  T +++       F + ESCG+C PCREGT  M+ ++ER
Sbjct: 439 FDSLAKIGAMIGSGGLVIMDEDTCMVEVARFFMSFTQRESCGKCVPCREGTKRMLEILER 498

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +V G  +  ++D L E++  IE   +C LG +A  P+   +  F     E I++  RC
Sbjct: 499 IVAGNGKPSDMDELRELADMIESTALCGLGKSAPKPVISTMNAFEEEYLEHINE-KRC 555


>gi|323702077|ref|ZP_08113745.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532959|gb|EGB22830.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 569

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 160/401 (39%), Positives = 245/401 (61%), Gaps = 7/401 (1%)

Query: 19  SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ + ++   +  + K+L E     +++EVK SGLRGRGGAGF TGMKW F+    +D+ 
Sbjct: 154 SIEEYIAMDGYKALAKVLQEMTPQQVVDEVKKSGLRGRGGAGFPTGMKWQFVLDQKADQ- 212

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+VVN DE +PG   DR ++  +P+++IE   I  +A+GA   + Y+R E+ R  +   
Sbjct: 213 KYVVVNGDEGDPGAFMDRSVLEDDPYSVIEAMTIGGYAVGASKGYAYIRLEYPRAIDHFT 272

Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A+      GLLG+N  LG D   DI +  GAGA++CGEETALL S+EG++G+PR +PPF
Sbjct: 273 KALARAREVGLLGNNI-LGTDFSFDIEIRVGAGAFVCGEETALLASIEGRRGEPRPRPPF 331

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE+ A +  I+ +G  WY+  G E ++GTK+F+++G +N    VE
Sbjct: 332 PAVSGLFGKPTLINNVETWANICPIIIKGGDWYATMGTEKSKGTKVFTLAGKINNTGLVE 391

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + IT  E++E   GG+ GG     A   GG S  C+PA  +   I DY+ L  +GS +
Sbjct: 392 VPLGITLREIVEDIGGGVPGG-KAFKAAQTGGPSGGCIPAAYLDTPI-DYENLAALGSIV 449

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +I++D  T ++        F + ESCG+CTPCR GT  M+ ++ER+ KG+ ++ +I
Sbjct: 450 GSGGMIIVDEGTCMVDLAKFYLGFTQDESCGKCTPCRIGTKRMLEILERITKGVGKEEDI 509

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +LL E++ +I+   +C LG  A  PI   ++ FR   E  +
Sbjct: 510 ELLIELANSIKASALCGLGQTAPNPILSTLRYFRDEYEAHV 550


>gi|242399493|ref|YP_002994918.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
 gi|242265887|gb|ACS90569.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
          Length = 602

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 235/393 (59%), Gaps = 4/393 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +++ + ++ G ++ + K  +   + II+ +  SGLRGRGGAGF TG+KW F      D  
Sbjct: 129 ENIEEYIAAGGYEALKKAFKMKPEEIIDFITKSGLRGRGGAGFPTGLKWKFTRDAPGDE- 187

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V NADE +PG   DR+++  +PH +IEG +I ++AIGA   FIYVR E+    + L+
Sbjct: 188 KYIVCNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATKGFIYVRAEYPLAIKRLR 247

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ +    G LG N    G+  +I++  GAGA++CGEETAL+ S+EGK+G PR +PP+P
Sbjct: 248 IALKQAREKGFLGENILGSGFSFEIVIKEGAGAFVCGEETALIASIEGKRGMPRPRPPYP 307

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNVE+ A VP I++ G   Y+  G E ++GTK+F++SG + +   VE 
Sbjct: 308 AQKGLWGRPTNINNVETWANVPWIIKHGWEAYAALGTEKSKGTKVFALSGKIKHGGNVEV 367

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M IT  E++ +  GG + G   + AV  GG S  C+P   +    +DY+ +   G+ +G
Sbjct: 368 PMGITLREILYEIGGGTKTG-KKIKAVQLGGPSGGCIP-DYLFNTPVDYESVTATGAIMG 425

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++VMD  T ++        F   ESCG+CT CR GT  M  +++++ KG     +I+
Sbjct: 426 SGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRLGTKRMWELLDKITKGEGALEDIE 485

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L +++  ++  ++C LG  A  P+   +K F+
Sbjct: 486 KLEKLAPLVKTGSLCGLGQTAPNPVLTTLKYFK 518


>gi|206602824|gb|EDZ39305.1| NADH dehydrogenase, subunit F [Leptospirillum sp. Group II '5-way
           CG']
          Length = 1048

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/405 (37%), Positives = 233/405 (57%), Gaps = 10/405 (2%)

Query: 19  SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D +  G +  +  ++  +  D +I+ +  SGLRGRGGAGF TGMKW F  +   D  
Sbjct: 134 SIDDYLKTGGYSALKAVIAGETPDSVIDTLIRSGLRGRGGAGFPTGMKWKFTRQAQGDV- 192

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESL 136
            Y+V NADE +PG   DR ++  +PH++IEG +I +FAIG A   +IY R E+      L
Sbjct: 193 KYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMIIGAFAIGNARQGYIYCRAEYPHAIRLL 252

Query: 137 QAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           + A+ +    G LG     S L + ++I    GAGAY+CGEETALL S+ G +G P  KP
Sbjct: 253 KKAIAQAMERGYLGERILGSDLSFHLEI--KEGAGAYVCGEETALLASIMGDRGMPWPKP 310

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++  PT +NNVE++A +P I+  GA W++ +G E  +GTK F+++G +     
Sbjct: 311 PFPAQKGIWNNPTLINNVETLANIPHIILGGAEWFASYGTEKTKGTKTFALTGKIKRTGL 370

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +E +   T  E++ +  GG+  G     A   GG S  C+P   +   I D++ L   G+
Sbjct: 371 IEVAAGTTLKEIVYEIAGGM-SGQKKFKAAQLGGPSGGCIPVDLIDTPI-DFESLISAGA 428

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +G+  +IV+D +  I+        F K ESCG+CTPCR+GT  M+ +++R+  G  + +
Sbjct: 429 IMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKVMLDMIQRISDGRGEMK 488

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++D L  +S  ++  ++C LG AA  P+   I+ FR   E+ I +
Sbjct: 489 DMDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIKR 533


>gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 596

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 157/393 (39%), Positives = 239/393 (60%), Gaps = 5/393 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +++++ ++R  ++ + K+L   +   +I EVK SGLRGRGG GF TG+KW    +  +D+
Sbjct: 128 ENVNEYIARDGYEALGKVLTSMKPQDVIAEVKKSGLRGRGGGGFPTGLKWEIASRFSADQ 187

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ NADE +PG   DR I+  +PH++IE   I  +AIGA    +Y+R E+    + L
Sbjct: 188 -KYVICNADEGDPGAFMDRSILEGDPHSVIEAMAICGYAIGATKGMVYIRAEYPLAVKRL 246

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q A+++    GLLG +    G+D D+ + +GAGA++CGEETAL++SLEG +G+P  KPPF
Sbjct: 247 QKAIEDAREVGLLGKDILGSGFDFDVELRYGAGAFVCGEETALIQSLEGNRGEPVSKPPF 306

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G YG P+ VNNVE+ A VP I+ +GA W++  G E ++GTK+F+++G VN    VE
Sbjct: 307 PAERGFYGKPSNVNNVETFACVPPIILKGADWFASIGTEKSKGTKVFALAGKVNNVGLVE 366

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M IT  E+I    GGIR G     AV  GG S  CL    +   I D+D L E GS +
Sbjct: 367 VPMGITLREVIYDIGGGIRDGR-KFKAVQTGGPSGGCLTEKHLDTPI-DFDTLLEAGSMM 424

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD    ++        F   ESCG+CTPCR G   M+ +++++ +G A + ++
Sbjct: 425 GSGGMIVMDEDNCMVSVAKFYLEFTVEESCGKCTPCRVGNRRMLEMLDKICQGKATRDDL 484

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + L E++  I+  ++C LG  A  P+   + NF
Sbjct: 485 NRLRELALIIKDTSLCGLGQTAPNPVLSTLDNF 517


>gi|302342952|ref|YP_003807481.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301639565|gb|ADK84887.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 596

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 161/400 (40%), Positives = 238/400 (59%), Gaps = 10/400 (2%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           L  +S+ + ++R  +  + K L E     I+NEVK SGLRGRGG GF TG+KW F    C
Sbjct: 126 LDAESIDEYIARDGYRALAKALTEMSPQDIVNEVKKSGLRGRGGGGFPTGLKWEF----C 181

Query: 74  SDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
              P    Y++ NADE +PG   DR I+  +PH++IEG  IA+ AIGAH  F+Y R E+ 
Sbjct: 182 QRTPGEIKYVLCNADEGDPGAFMDRSILEADPHSVIEGMTIAAKAIGAHHGFVYCRAEYP 241

Query: 131 RERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
              E L+ A+++    GLLG N    G+  ++ ++ GAGA++CGEETAL+ S+EGK+G P
Sbjct: 242 LAIERLKLAIEKATEYGLLGDNILDTGFSFNLQIYQGAGAFVCGEETALMRSIEGKRGMP 301

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R +PPFPA  GLY  PT +NNVE+ A V  I+ +G  WY+  G   ++GTK+F+++GHVN
Sbjct: 302 RPRPPFPAVKGLYDKPTVLNNVETWANVAPIIIKGGDWYASIGTAGSKGTKVFALTGHVN 361

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
               VE  M  +   +I    GG+        AV  GG S  C+P  Q      DY+ + 
Sbjct: 362 NIGLVEVPMGTSLRTIIYDIGGGMPKKHRKFKAVQLGGPSGGCVPE-QYLDLPCDYEEII 420

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
           + G+ +G+  +IVMD ST ++        F + ESCG+CTPCREGT  M++++E++ +G 
Sbjct: 421 KAGAIMGSGGMIVMDDSTCMVDMARFFMEFVQDESCGKCTPCREGTRRMLQILEKICEGR 480

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            +  ++DLL E++  I+   +C LG     P+   ++ FR
Sbjct: 481 GEMSDLDLLEELAAMIKDSALCGLGQTGPNPVLSTLRYFR 520


>gi|302557264|ref|ZP_07309606.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302474882|gb|EFL37975.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 641

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 159/396 (40%), Positives = 219/396 (55%), Gaps = 18/396 (4%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L D  + G +  + +    G   +I EV  SGL GRGGA F TG KW        D PHY
Sbjct: 253 LDDYRAHGGYTALRRAFALGPAGVIREVTDSGLTGRGGAAFPTGRKWQATASQ-PDHPHY 311

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           LV NADESEPGT KDR +M  +P+ L+E   IA++A GAH  ++Y+RGE+ R    ++ A
Sbjct: 312 LVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALRRMEHA 371

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           + +  A GLLG +    GY  DI +  GAGAYICGEETAL  S+EG +G+PR KPPFP  
Sbjct: 372 IGQGRARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGHRGEPRSKPPFPVE 431

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT  NNVE++  V  +L  GA  Y+  G   + G KLF +SG V  P   E   
Sbjct: 432 KGLFGRPTAENNVETLVNVLPVLTLGAQAYAAIGTGRSTGPKLFCVSGSVARPGVYELPF 491

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGSG 314
             T  EL+     G+R   DNL AV+ GG++      G +R   +D    ++G +E G+ 
Sbjct: 492 GATLGELL--RLAGVR---DNLRAVLLGGAA-----GGFVRPDELDIPLTFEGTREAGTT 541

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV--KGIAQK 372
           LG+  V+  D +  + + + R++ F++ ESCGQC PCR GT      + R+    G    
Sbjct: 542 LGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALRRIADRTGDGAA 601

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            +I LL EV + +   +IC LG  A   ++  I   
Sbjct: 602 DDIALLREVGRTMRDASICGLGQTAWNAVESAIDRL 637


>gi|116750130|ref|YP_846817.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116699194|gb|ABK18382.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 603

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 162/422 (38%), Positives = 244/422 (57%), Gaps = 13/422 (3%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
             + Q RI   N   +  + + D ++ G +  + K L   R  +INE+K SGLRGRGG G
Sbjct: 120 FFSPQRRIVLKNCGFINPEDIDDYIAVGGYQGIQKALGGSRMDVINEIKKSGLRGRGGGG 179

Query: 60  FSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           F TGMKW F    C + P    YL+ NADE +PG   DR ++  +PH ++EG +IA++AI
Sbjct: 180 FPTGMKWEF----CHNSPGDQKYLICNADEGDPGAFMDRAVLEGDPHAVLEGMMIAAYAI 235

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGE 174
           GA  A+IY R E+    E    A+D+    G LG     G D+D  I +  GAGA++CGE
Sbjct: 236 GASKAYIYCRAEYPMAYERSMIAIDQATKRGFLGKKI-FGSDMDFEIKLKLGAGAFVCGE 294

Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234
           ETAL+ S+EGK+G P  +PPFPA  GL+G PT +NNVE+   + TI+ +G  W++  G E
Sbjct: 295 ETALMASIEGKRGMPMPRPPFPAVKGLFGKPTNINNVETFGNIATIMTKGGDWFASVGTE 354

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
            ++GTK+F+++G ++Y   VE  M     E+I++  GGI        A   GG S  C+P
Sbjct: 355 KSKGTKVFALAGKISYSGLVEIPMGTPLREIIDEIGGGIPNKR-KFKAAQTGGPSGGCIP 413

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
           +       MDY+ L ++GS +G+  +IV D +T ++        F + ESCG+C PCR G
Sbjct: 414 SEHFD-IPMDYENLTQVGSIMGSGGLIVTDETTCMVDMAKFFLGFTQKESCGKCVPCRLG 472

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           T  M+ V+  + KG A   +++ L E++++++G ++C LG  A  P+   ++ FR   E 
Sbjct: 473 TKKMLEVLGDISKGKATMEDLEQLLELAQDVKGGSLCGLGQTAPNPVLSTVRYFRDEYEA 532

Query: 415 RI 416
            I
Sbjct: 533 HI 534


>gi|295112090|emb|CBL28840.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Synergistetes bacterium SGP1]
          Length = 628

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 154/406 (37%), Positives = 237/406 (58%), Gaps = 7/406 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L++ ++RG +  + K L +   + + +E+  SGLRGRGGAGF TG KW  + +  + + H
Sbjct: 160 LNEYIARGGYAALGKALHDMTPEAVCDEIDRSGLRGRGGAGFPTGKKWKSVLRQKAPK-H 218

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V N DE +PG   D  IM   P+ +IEG  IA++A  +   +IYVR E+    + L+ 
Sbjct: 219 YVVCNGDEGDPGAFMDCSIMEGAPYRMIEGMTIAAYAARSDEGYIYVRAEYPLAVKRLRT 278

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A++    +GLLG +  LG D    +H   GAGA++CGE +AL  S+EG +G PR+KPP  
Sbjct: 279 AIERATEAGLLG-DGILGTDFSFKLHINQGAGAFVCGEGSALTSSIEGNRGMPRVKPPRT 337

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT +NNVE+ A VP I++ GA W+ G G E + GTK F+++G+V     +E 
Sbjct: 338 VEQGLFGKPTVLNNVETYANVPKIVQEGADWFRGIGTEGSPGTKAFALTGNVVNTGLIEV 397

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  T  ++I    GGIR G     AV  GG S  CL   +     +D+D L+ +G+ +G
Sbjct: 398 PMGTTLRKIIFDIGGGIRNG-KKFKAVQIGGPSGGCLCLDEHLDLPLDFDSLQRIGAMIG 456

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++VMD  T +++       F + ESCG+C PCREGT  M+ ++ER+V G  +  ++D
Sbjct: 457 SGGLVVMDEDTCMVEVARFFMNFTQRESCGKCVPCREGTKRMLEIVERIVGGQGRPEDLD 516

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           LL E++  ++   +C LG  AA P+   ++ FR   E  + +  RC
Sbjct: 517 LLEELADTVKNTALCGLGKTAANPVTSTLRYFRDEYEAHVSE-KRC 561


>gi|29828377|ref|NP_823011.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680]
 gi|29605480|dbj|BAC69546.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 607

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 160/393 (40%), Positives = 227/393 (57%), Gaps = 10/393 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G +  + +  E G   +I EV  +GL GRGGA F TG KW        DRPH
Sbjct: 218 SLDDYRAHGGYAALRRAFELGPAEVIREVTDAGLVGRGGAAFPTGRKWQATASR-PDRPH 276

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           +LV NADESEPGT KDR IM  +P+ L+E   IA++A+GAH  ++Y+RGE+ R  E +  
Sbjct: 277 HLVCNADESEPGTFKDRVIMEGDPYALVESMTIAAYAVGAHQGYLYLRGEYPRALERMSH 336

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+++  A GLLG +    GY  DI +  GAGAYICGEETAL  S+EG +G+PR KPPFP 
Sbjct: 337 AIEQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYRGEPRSKPPFPV 396

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT  NNVE++  V  +L  GA  Y+  G   + G KLF +SG V+ P   E  
Sbjct: 397 EKGLFGRPTAENNVETLVNVLPVLTMGAQAYAAIGTAKSTGPKLFCVSGSVDRPGVYELP 456

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  EL+E    G+R   + L AV+ GG++   +   + R   + ++G ++ G+ LG+
Sbjct: 457 FGATLGELLE--LAGVR---ERLRAVLLGGAAGGFVRPDE-RDIPLTFEGTRQAGTTLGS 510

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV--KGIAQKREI 375
             V+  D +  + + + R++ F++ ESCGQC PCR GT      + R+V   G A   +I
Sbjct: 511 GVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIVARTGAAAADDI 570

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            LL EV + +   +IC LG +A   ++  I   
Sbjct: 571 ALLREVGRAMRDASICGLGQSAWNAVESAIDRL 603


>gi|309791453|ref|ZP_07685958.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6]
 gi|308226489|gb|EFO80212.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6]
          Length = 529

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 157/379 (41%), Positives = 240/379 (63%), Gaps = 8/379 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+E+  SGLRGRGGAG+ TG+KWS + K   +R  Y+V N DE +PG   DR ++  +P
Sbjct: 156 VIDEITRSGLRGRGGAGYPTGLKWSTVAKSRGER-KYVVCNGDEGDPGAFMDRSVLESDP 214

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDV 159
           H ++EG  IA++AIGA   +IYVRGE+    + LQ A+++    GLLGS   +S   + V
Sbjct: 215 HLVLEGMCIAAYAIGADQGYIYVRGEYPFAIQRLQKAINQAKKFGLLGSQIFDSTFDFRV 274

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI V  GAGA++CGEETALL S+EG++GQPR +PP+PA  GL+G PT +NNVE+ A + +
Sbjct: 275 DIRV--GAGAFVCGEETALLASIEGRRGQPRPRPPYPAESGLWGKPTLINNVETFANIAS 332

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  G  WY+  G E +RGTK+F+++G ++    +E  M IT  E++ +  GG   G + 
Sbjct: 333 IIEHGPDWYASIGTETSRGTKVFALTGKIHNTGLIEVPMGITLREIVHQLGGGGHSGSE- 391

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           + AV  GG S  C+PA  +    +DY+ L ++GS +G+  ++VMD ST++++       F
Sbjct: 392 VKAVQTGGPSGGCIPA-SLFDTPVDYESLAQVGSIMGSGGMVVMDNSTNMVELAKFYMEF 450

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
            K ESCG+C PCR GT  + R++E++  G   + +ID L E+ + +   ++C LG +A  
Sbjct: 451 CKDESCGKCVPCRVGTVQIHRLLEKITAGQGSQADIDQLQELCQLLRNTSLCGLGQSAPN 510

Query: 400 PIQGLIKNFRPLIEERIDQ 418
           P+   +K F    E  I++
Sbjct: 511 PVMSTLKYFTEEYEHLIER 529


>gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 596

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 164/425 (38%), Positives = 247/425 (58%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+     GL   + + ++++   +  + K+L E   + +I+E+K SGLRGRGG 
Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVISEIKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR ++  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + LQ A+D+    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ GK+G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W+S  G E ++
Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E+I +  GGI  G     A   GG S  C+PA  
Sbjct: 349 GTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIPNG-KKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I DYD L  +GS +G+  +IVMD    ++        F   ESCG+C+PCR GT  
Sbjct: 408 LDTPI-DYDSLLSIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ ++  G  ++ +I+ L  ++ +I+  ++C LG  A  P+   ++ FR   E  I 
Sbjct: 467 MLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTLRYFRDEYEAHIK 526

Query: 418 QYHRC 422
           +  RC
Sbjct: 527 E-KRC 530


>gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
          Length = 643

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 156/394 (39%), Positives = 230/394 (58%), Gaps = 5/394 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + + +  G ++ + K+L     + +I  + ASGLRGRGGAGF TG KW F     +D+
Sbjct: 175 EKIEEYIGTGGYEALGKVLTTMSPEDVIEVITASGLRGRGGAGFPTGRKWQFAKDNDADQ 234

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA   +IYVR E+    E L
Sbjct: 235 -KYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGATQGYIYVRAEYPIAVERL 293

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             A+ +    GLLG N    G+D DI +  GAGA++CGEETAL+ S+EG +G+PR +PPF
Sbjct: 294 NIAIKQAREMGLLGKNLFNTGFDFDIELRLGAGAFVCGEETALMTSIEGHRGEPRPRPPF 353

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+  PT +NNVE+ A VP I+  GA W+S FG E ++GTK+F++ G ++    VE
Sbjct: 354 PAVKGLFEKPTILNNVETWANVPQIIMNGAEWFSSFGTEKSKGTKVFALGGKIHNTGLVE 413

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  E++E+  GG   G     A   GG S  C+PA  +   I DY+ L  +GS +
Sbjct: 414 VPMGTTLREIVEEI-GGGIPGGKKFKAAQTGGPSGGCIPAEHLDVPI-DYENLMAIGSMM 471

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD  T ++        F   ESCG+C+PCR GT  ++ +++++  G A   ++
Sbjct: 472 GSGGLIVMDEETCMVDIAKFFLNFTVDESCGKCSPCRLGTKRLLEMLDKITSGNATMEDL 531

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           D L E+   I+   +CALG  A  P+   +  FR
Sbjct: 532 DKLEELCYYIKDNALCALGQTAPNPVLSTLHYFR 565


>gi|302342222|ref|YP_003806751.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301638835|gb|ADK84157.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 633

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 155/409 (37%), Positives = 233/409 (56%), Gaps = 6/409 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q  +  N+  +    ++DS++ G +  + K +LE   + ++ EV+ SGLRGRGGAGF TG
Sbjct: 149 QRVVLRNIGRIDPTDIADSIAIGSYQALAKALLEMTPEHVVREVEKSGLRGRGGAGFPTG 208

Query: 64  MKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            KW         +  P Y+V N DE +PG   D  +M  +PH +IEG ++ +FA+GAH  
Sbjct: 209 RKWRGAMAAAKKKGGPVYVVCNGDEGDPGAFMDCMVMEGDPHAVIEGMILGAFALGAHQG 268

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           FIYVR E+    + L  A+D+    GLLG N    G+  DI ++ GAGA++CGE TAL  
Sbjct: 269 FIYVRAEYPVAIKHLTMAMDQARTLGLLGENILGSGFSFDIQINRGAGAFVCGESTALFT 328

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PR K    A  GL+G PT +NNVE+ A VP I+  G  W++G G  ++ GTK
Sbjct: 329 SIEGKAGEPRPKYVRSAEEGLWGKPTVLNNVETWANVPQIIENGGQWFAGIGVPHSTGTK 388

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G VN    VE  M +    ++E   GG+ GG     AV  GG S  CLP   +R 
Sbjct: 389 VFSLVGKVNNVGLVEVPMGVPLRTIVEDIGGGVPGG-KPFKAVQTGGPSGGCLPYA-LRD 446

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L + GS +G+  +IVMD    ++        F + ESCG+C PCR G   +  
Sbjct: 447 VAVDFDSLTKAGSMMGSGGMIVMDERDCVVDVARYFLRFLEEESCGKCLPCRLGVTRLRE 506

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +++ +  G  ++ +I+ +  +S  ++  ++CALG +A  P+   +K FR
Sbjct: 507 MLDEISAGRGKEEDIEAILSLSAAVKDGSLCALGGSAPNPVLTTLKYFR 555


>gi|282899670|ref|ZP_06307634.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195549|gb|EFA70482.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Cylindrospermopsis raciborskii CS-505]
          Length = 533

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 139/368 (37%), Positives = 225/368 (61%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +  SGLRGRGGAG+ TG+KW  + K    +  +++ NADE +PG   DR ++  +P
Sbjct: 160 VVEVITKSGLRGRGGAGYPTGLKWGTVAKSPGAK-KFVICNADEGDPGAFMDRSVLESDP 218

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H ++EG  IA+++IGA+  +IYVR E+    + L+ A+ +    G+LG+N  +  +D  I
Sbjct: 219 HRVLEGMAIAAYSIGANQGYIYVRAEYPIAIKRLETAIRQAQRLGVLGTNIFESPFDFKI 278

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGAY+CGEETAL+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A +  I+
Sbjct: 279 EIRIGAGAYVCGEETALMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPII 338

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R GA W++  G E ++GTK+F+++G +     +E  M  T  E++E+  GGI  G     
Sbjct: 339 RNGAEWFANIGTEKSKGTKVFALAGKIRNTGLIEVPMGTTLGEIVEQMGGGIPDG-GMAK 397

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  C+PA      + DY+ L  +GS +G+  +IVMD++T+++        F  
Sbjct: 398 AVQTGGPSGGCIPASAFTTPV-DYESLSALGSMMGSGGMIVMDQTTNMVDVARFFMEFCM 456

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  +  ++ R+ +G   + ++ LL E+   ++  ++C LG +A  P+
Sbjct: 457 DESCGKCIPCRVGTVQLHDLLTRISQGKGTQNDLHLLEELCDMVKHTSLCGLGQSAPNPV 516

Query: 402 QGLIKNFR 409
              ++ F+
Sbjct: 517 FSTLRYFK 524


>gi|301060225|ref|ZP_07201092.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300445737|gb|EFK09635.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 651

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 154/407 (37%), Positives = 234/407 (57%), Gaps = 7/407 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + + D ++ G +  + K L+   + +I EVKASGLRGRGGAGF TGMKW    K      
Sbjct: 157 EEIDDYLAHGGYAALAKALQSSPEMVIEEVKASGLRGRGGAGFPTGMKWELAAKA-GRVE 215

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             ++ NADE +PG   DR I+   PH ++EG +I + AIGA  A +YVR E+    + + 
Sbjct: 216 KTVICNADEGDPGAYMDRTILESNPHQVLEGIIICARAIGAQKAVVYVRAEYPLAVKMVT 275

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A+       LLG +  LG  + +DI V  G+GA++CGEETAL++S+EG++G P  +PPF
Sbjct: 276 RAIARAKEMRLLG-DRILGSPFSLDIEVFQGSGAFVCGEETALIQSIEGRRGMPTYRPPF 334

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P   GL+G PT +NNV++ A VP ++  GA  +   G E + GT +FS+ G+V +   VE
Sbjct: 335 PVQKGLWGQPTVINNVKTFATVPFVVAHGALQFREVGTEKSPGTAIFSVVGNVRHAGLVE 394

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M +    L+   CGGI        AV  GG S  CLPA +     +D+D L E G+ +
Sbjct: 395 IPMGVDLRTLVFDTCGGIP-NKKAFKAVQIGGPSGGCLPA-EFLDTPIDFDSLTEAGAMM 452

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  ++VMD  T ++        F + ESCG+CT CR GT  ++ ++ R+ KG  ++ ++
Sbjct: 453 GSGGMVVMDEDTCMVDVARYFLDFTQKESCGKCTFCRVGTHHLLEILVRITKGEGREGDL 512

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           ++L  +S++I+  ++C LG  A  P+   +K FR   E  I +  RC
Sbjct: 513 EILESLSEDIKAGSLCGLGKTAPNPVLTSLKYFRDEYEAHIKE-KRC 558


>gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. SR1/5]
          Length = 623

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 156/426 (36%), Positives = 246/426 (57%), Gaps = 9/426 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ + +S G +  + K   E     +I+E+  SGLRGRGGA
Sbjct: 136 FLNQQTRIVLENCGKIDAESIDEYISVGGFSAMAKAFFEMTPQGVIDEISKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS + +  S++  Y+V N DE +PG   D  +M  +P+ +IEG VIA++A+GA
Sbjct: 196 GFPAGKKWSQVARQ-SEKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMVIAAYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176
              +IYVR E+    + L+ A+++  + GLLG N  LG  ++  +H   GAGA++CGE +
Sbjct: 255 EDGYIYVRAEYPLSVQRLRMAIEQAESYGLLGDNI-LGSGINFHLHINRGAGAFVCGEGS 313

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL  S+EG +G PR+KPP     GL+G PT +NNVE+ A VP I+ +GA W+   G E +
Sbjct: 314 ALTASIEGNRGMPRVKPPRTVEQGLWGKPTVLNNVETYANVPKIILQGADWFHTIGTEGS 373

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK FS++G +     +E  M  +   +I    GG++ G      V  GG S  CL   
Sbjct: 374 PGTKTFSLTGSIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIDD 432

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           Q+    +D+D +K++ + +G+  ++VMD +T +++       F + ESCG+C PCREGT 
Sbjct: 433 QIDHP-LDFDSVKKLDAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTK 491

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEER 415
            M+ ++ER+V G  +  ++D L E++  ++   +C LG +A  P+   +K FR   +E  
Sbjct: 492 RMLEILERIVAGKGELSDLDELEELANMVQSMALCGLGKSAPLPVISTLKRFRDEYVEHI 551

Query: 416 IDQYHR 421
           +D+  R
Sbjct: 552 VDKKCR 557


>gi|87303135|ref|ZP_01085933.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Synechococcus sp. WH 5701]
 gi|87282302|gb|EAQ74262.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Synechococcus sp. WH 5701]
          Length = 528

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 150/413 (36%), Positives = 245/413 (59%), Gaps = 16/413 (3%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDW----IINEVKASGLRGRGGAG 59
           Q RI     GL     L  +++ G +  ++++L   R W    ++ E++ SGLRGRGGAG
Sbjct: 114 QRRIVLEHCGLIDPTDLEQAIAVGAYGQLERVL---RGWSPEQVVTELQRSGLRGRGGAG 170

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           + TG+KW+ + ++   R   +V NADE +PG   DR ++  +PH ++EG  IA++A+GA 
Sbjct: 171 YPTGLKWATVARMPGAR-KVVVCNADEGDPGAFMDRAVLEGDPHRVLEGMAIAAYAVGAD 229

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEET 176
             FIY+R E+    E L+ A+++    G LG+    +  G+ +++ V  GAGAY+CGEET
Sbjct: 230 HGFIYIRAEYELAIERLRLAIEQAVVRGRLGAALFGTGFGFTLELRV--GAGAYVCGEET 287

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EGK+G PR +PP+PA  G+ G PT +NNVE+ A V  ILR GA W++  G   +
Sbjct: 288 ALIASIEGKRGTPRPRPPYPAERGVGGRPTLINNVETFANVAPILREGADWFAAIGTAGS 347

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+FS++GHV     VE  M  +   ++ +   G   G   + AV  GG S  C+PA 
Sbjct: 348 SGTKVFSLTGHVRRGGLVEVPMGTSLATVVLEMGEGSPQG-SAVKAVQTGGPSGGCVPAD 406

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           ++    +DY+ L+ +G+ +G+  ++V+D+ TD++        F + ESCG+C PCR GT 
Sbjct: 407 RLD-TPLDYESLQALGTIMGSGGMVVLDQGTDMVALAAYFMAFCREESCGKCVPCRAGTV 465

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            +  ++E+++ G A + ++D L  +   +   ++C LG +A  P+   ++ FR
Sbjct: 466 QLHGLLEKILAGQASQADLDQLETLGAMVMDTSLCGLGQSAPKPMLSTLRYFR 518


>gi|298528247|ref|ZP_07015651.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511899|gb|EFI35801.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 774

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 237/405 (58%), Gaps = 7/405 (1%)

Query: 24  MSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
           ++ G +  V K+  +   D ++ EVK + LRGRGGAGF  G KW+   +     P  ++ 
Sbjct: 154 IAAGGFKAVKKMFSRMSPDDVLEEVKKANLRGRGGAGFPAGFKWAHTKRSGKGVPKLVIA 213

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           N DE +PG   DR IM  +P +L+EG +I +++I A+  FIYVR E+    ++L+ A+ +
Sbjct: 214 NGDEGDPGAFMDRSIMEGDPFSLLEGMLICAYSIDANFGFIYVRHEYPLAIKTLEKAIKQ 273

Query: 143 CYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV-- 199
               GLLG N    G+D  + +  GAGA++CGE T+L+ SLEG++G PR +PP  + V  
Sbjct: 274 AEEMGLLGRNILGTGFDFSVFIKEGAGAFVCGEATSLVASLEGQRGFPRARPPRLSEVGG 333

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           G +G P+ +NN+E+ A VP I+ +GA W+ G G   + GTK+FS++G VN    VE  M 
Sbjct: 334 GAWGYPSNLNNIETYACVPPIIEKGADWFLGIGTPGSPGTKVFSLAGKVNNTGLVEVPMG 393

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
           IT  E++++  GGI        A+  GG S  C+P  Q     +D+D L ++GS +G+  
Sbjct: 394 ITLREIVDEIGGGILNNR-KFKAIQTGGPSGGCIPE-QYLDLPVDFDSLWQVGSMMGSGG 451

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           ++VMD S  ++        F + ESCG+C PCR GT  M+++MER+  G  Q  +I+ L 
Sbjct: 452 MVVMDESDCMVDIAKFFLAFCQSESCGKCPPCRVGTYQMLQIMERITSGEGQPGDIERLE 511

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-DQYHRCN 423
           ++ + +   ++C LG +A  P+   ++ FR   EE I D+Y R N
Sbjct: 512 KLIETVGEGSLCGLGRSAPNPVATTLRYFREEYEEHIHDKYCRAN 556


>gi|300245619|gb|ADJ93867.1| putative aromatic-degrading protein [Clostridia bacterium
           enrichment culture clone BF]
          Length = 634

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 154/421 (36%), Positives = 240/421 (57%), Gaps = 7/421 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           +Q  +  +   +   ++   ++R  +  + K L      ++ EVK S LRGRGGAGF TG
Sbjct: 140 EQKVVLADCGLIDPDNIDHYLARDGYAALAKALTGKPAAVVAEVKDSKLRGRGGAGFPTG 199

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW       +  P Y++ NADE +PG   DR ++   PH ++EG ++A++A+GA+  +I
Sbjct: 200 IKWETCMNA-AGSPKYVICNADEGDPGAFVDRALLESNPHQMLEGLILAAYAVGANEGYI 258

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLES 181
           YVR E+      L  A+++    GLLG  S LG  +++DI V  G+GA++CGEETAL+ S
Sbjct: 259 YVRAEYPLAITRLHTAIEQAREKGLLG-ESILGSDFNLDITVFQGSGAFVCGEETALIAS 317

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG  G P  +PPFPA  GL G PT +NNV++++ +P I+R GA W+   G   + GT +
Sbjct: 318 IEGNAGIPTHRPPFPAVSGLRGKPTIINNVKTLSYIPNIIRNGADWFKSIGTPGSPGTAV 377

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G V      E  M  T   L+     GI+       AV  GG S  CLP   +   
Sbjct: 378 FALAGKVVGTGLAEVPMGTTIRTLVYDVGNGIKND-KQFKAVQIGGPSGGCLPESAIDLP 436

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I D+D LKE G+ +G+  ++V+D    +++       F +HESCG+CT CR GT  M+ +
Sbjct: 437 I-DFDSLKEAGAMMGSGGMVVLDEDDCMVEIARFFLEFTQHESCGKCTFCRLGTKQMLDI 495

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +  + +G  +  +IDLL+E++++I+  ++CALG  A  P+   I+ FR   E  I Q  R
Sbjct: 496 LTDITQGRGKPEDIDLLWELAEDIKIGSLCALGKTAPNPVLTTIRFFRNEYEAHI-QEGR 554

Query: 422 C 422
           C
Sbjct: 555 C 555


>gi|295110158|emb|CBL24111.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus obeum A2-162]
          Length = 623

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 155/420 (36%), Positives = 242/420 (57%), Gaps = 8/420 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ + ++ G +  + K   +     +I+EV  SGLRGRGGA
Sbjct: 136 FLNQQTRIVLENCGNIDAESIDEYIAAGGFQAMAKAFFDMSPQEVIDEVTKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS + +   ++  Y+V N DE +PG   D  +M  +P+ +IEG VIA++A+GA
Sbjct: 196 GFPAGKKWSQVARQ-KEKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMVIAAYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176
              +IYVR E+    + L+ A+++  A GLLG N  LG  ++  +H   GAGA++CGE +
Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEAYGLLGDNI-LGSGINFHLHINRGAGAFVCGEGS 313

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I+ +GA W+   G E +
Sbjct: 314 ALTASIEGKRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILQGADWFRTIGTEGS 373

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK FS++G +     +E  M  +   +I    GG++ G      V  GG S  CL   
Sbjct: 374 PGTKTFSLTGAIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIED 432

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           Q+    +D+D +K + + +G+  ++VMD +T +++       F + ESCG+C PCREGT 
Sbjct: 433 QIDRP-LDFDSVKSLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTK 491

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ER+V+G  +  ++D L E++  ++   +C LG +A  P+   +K FR   EE I
Sbjct: 492 RMLEILERIVEGKGEMSDLDELEELATMVQSMALCGLGKSAPLPVISTLKRFRDEYEEHI 551


>gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519]
 gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii]
          Length = 576

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 165/419 (39%), Positives = 244/419 (58%), Gaps = 7/419 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59
           L  Q R+   N   +  +S+ D ++ G ++ +    E K +D +I+E+K SGLRGRGGAG
Sbjct: 90  LEKQPRVVLRNCGVINPESIDDYINIGGYEAIKNCYESKSQDAVIDEIKKSGLRGRGGAG 149

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW    K    +  Y+V NADE +PG   DR ++  +PH LIEG +I  FAIGA 
Sbjct: 150 FPTWFKWDAAKKSAGQK-KYVVCNADEGDPGAFMDRSVLEGDPHNLIEGMMICGFAIGAD 208

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETA 177
              +YVR E+      LQ A+++    G LG N     G +  + +  GAGA++CGEETA
Sbjct: 209 EGIVYVRAEYPLAILRLQKAIEDATERGFLGENIFGIPGRNFSLRIKAGAGAFVCGEETA 268

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PRLKPPFPA  G +  PT +NNVE+ A VP I++ G   ++ +G E +R
Sbjct: 269 LIASLEGERGMPRLKPPFPAQKGYWQLPTNINNVETFANVPWIIKNGGEAFAKYGIETSR 328

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     VE  M I+  E+I    GGI G      AV  GG S  C+PA +
Sbjct: 329 GTKVFALTGKVKKGGLVEVPMGISLKEIIYGVGGGIVGDRP-FKAVQLGGPSGGCVPA-E 386

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ + + G+ +G+  ++VMD +T ++        F   ESCG+CT CR GT  
Sbjct: 387 LIDTKVDYESITKTGAIVGSGGMVVMDDTTCMVDMARFFLDFTCKESCGKCTYCRLGTKR 446

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M+ ++ER+  G  ++ +I+LL E+S  ++  ++C LG  A  P+   IK FR   E+ I
Sbjct: 447 MLEILERITAGEGREGDIELLEELSYKVKDGSLCGLGQTAPNPVLTTIKYFRNEYEDHI 505


>gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 629

 Score =  276 bits (706), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 243/416 (58%), Gaps = 9/416 (2%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           NL  +    + D ++ G +  + K+L E   + +I EVK SGLRGRGGAGF TG+KW   
Sbjct: 140 NLGKINPMDIEDYLAVGGYTALAKVLTEMTPEEVIEEVKKSGLRGRGGAGFPTGVKWEGA 199

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC--AFIYVRG 127
            +    R  +++ N DE +PG   D  +M  +PH++IEG +I ++AIG +C   +IYVR 
Sbjct: 200 RRAPGAR-KFVICNGDEGDPGAFMDASLMEGDPHSVIEGMIICAYAIG-NCREGYIYVRE 257

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    + L  A+++  A G LG +    G+  DI +  GAGA++CGE T L+ S+EGK+
Sbjct: 258 EYPLAVKRLSIALEQARAWGFLGEDILGTGFSFDIQLKKGAGAFVCGESTTLMMSIEGKR 317

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
             PR+ PP     GL+G PT +NNVE+ A +P I+ +G  WY+ +G E ++GTK F I+G
Sbjct: 318 PSPRVTPPRSVEKGLWGMPTCLNNVETFANIPIIILKGGEWYAQYGTETSKGTKAFCITG 377

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V     +E  M +T  E+++K  GG+      L AV  GG S  C+P   +   + DY+
Sbjct: 378 KVRNTGLIEVPMGMTLREIVQKLGGGML-EEAQLKAVQTGGPSGGCIPEEYLDTPV-DYE 435

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L  +GS +G+  ++V+D  T +++       F + ESCG+C PCR GT  M++++ R+V
Sbjct: 436 SLTRLGSMMGSGGMVVVDEGTCMVEFARFFLNFTQQESCGKCPPCRIGTYEMLQILNRIV 495

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            G  Q+ +I+LL E+ + I+  ++C LG +A  P+   IK FR   E  I +  RC
Sbjct: 496 AGEGQEGDIELLEELGRKIKETSLCGLGQSAPNPVLSTIKYFREEYEAHIRE-KRC 550


>gi|118594391|ref|ZP_01551738.1| formate dehydrogenase, beta subunit [Methylophilales bacterium
           HTCC2181]
 gi|118440169|gb|EAV46796.1| formate dehydrogenase, beta subunit [Methylophilales bacterium
           HTCC2181]
          Length = 515

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 159/411 (38%), Positives = 235/411 (57%), Gaps = 6/411 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q+R+     G+     ++D      ++ + K +E     I+NEV  SGLRGRGGA F
Sbjct: 99  LKNQERLTFARVGITDPLDINDYEKHAGFNGLRKAIELEPQLIVNEVTDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S +  Y+V NADE + GT  DR IM ++P  LIEG +IA  A+GA  
Sbjct: 159 PTGIKWQTVLNTPS-KTKYIVCNADEGDSGTFSDRMIMENDPFVLIEGMIIAGMAVGAEY 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+   +E L  A++     G LG+N    GY+ D+ V   AGAYICGEET+LL
Sbjct: 218 GYIYLRSEYPDAQEVLNKAINIAKEKGFLGNNILSSGYNFDLEVTRAAGAYICGEETSLL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GLYG PT VNNV ++A VP I+ +GAS+Y+ FG   ++GT
Sbjct: 278 ESLEGKRGMVRYKPPLPAIEGLYGKPTAVNNVITLATVPIIMDKGASFYADFGMGRSKGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++     +E++  I+  EL+    GG   G + + AV  GG     LP GQ  
Sbjct: 338 LPIQLAGNLKQTGLIEKAFGISLRELLYDFGGGSFTG-NPIKAVQVGGPLGAFLPEGQFD 396

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   E+ + +G   ++  D +TD+ K       F   ESCG+CTPCR G+   M
Sbjct: 397 -TPLDYEKFSEINAVVGHGGIVAFDDTTDMAKMARYSFEFCAIESCGKCTPCRIGSTRGM 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
            V++++  GI Q +   LL ++ + +   ++CA+G    +P+   + NF P
Sbjct: 456 EVIDKIKGGIDQDKNEKLLRDLGETMVNGSLCAMGGMTPFPVISAL-NFFP 505


>gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 597

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 156/419 (37%), Positives = 253/419 (60%), Gaps = 6/419 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGA 58
           +   Q RI   N   +   S+++ ++RG +  + K+L+  +   ++NE+K SGLRGRGG 
Sbjct: 111 LFRKQHRIALRNCGMMDPDSVNEYIARGGYSGLAKMLDTMQPAEVVNEIKESGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW F  K  S++  Y++ NADE +PG   DR ++  +PH+++EG +IA +AIGA
Sbjct: 171 GFPTATKWEFCSKAKSNK-KYIICNADEGDPGAFMDRSLLEGDPHSVLEGMIIAGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              ++Y+R E+    + ++ A+++    GLLG N    G+++++ +  GAGA++CGEETA
Sbjct: 230 DEGYLYIRAEYPLAIKRIRNAINQAKELGLLGENILGSGFNMELKIKEGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE++A +P I+ +GA  ++  G + ++
Sbjct: 290 LIASIEGERGVPRSRPPFPAIKGLFGKPTIINNVETLANIPYIIDQGAQTFASVGTDKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     VE  M I+  E++ +  GG   G     AV  GG S  CLP  +
Sbjct: 350 GTKVFALTGKVKNSGLVEVPMGISVREIVYEIGGGTFEG-KKFKAVQTGGPSGGCLPESK 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I DYD L   G+ +G+  ++VMD  + +I        F + ESCG+CTPCREGT  
Sbjct: 409 LDLPI-DYDSLASAGTIMGSGGLVVMDEDSCMIDVAKYFLTFTRKESCGKCTPCREGTMR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ ++E++  G  +  ++D L  ++K I+   +C LG  A  PI   ++ FR   E  I
Sbjct: 468 LLEMLEKITAGEGEMADLDRLERLAKTIKTSALCGLGQTAPNPILSTLQYFRKEYETHI 526


>gi|91200367|emb|CAJ73413.1| strongly similar to NADH dehydrogenase I chain F [Candidatus
           Kuenenia stuttgartiensis]
          Length = 427

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 155/396 (39%), Positives = 233/396 (58%), Gaps = 8/396 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEV-KASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +L +    G +  + K+L++ +   + ++ K S LRGRGGAGF TGMKWSF+P +  D P
Sbjct: 20  NLKEYEQAGGYQALRKVLKEMQPQDVQKIIKDSNLRGRGGAGFPTGMKWSFVP-LGDDAP 78

Query: 78  H--YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YL+ NADE EPG  KDR ++   PH LIEG +IA++AI A+ +++ +R  +    E 
Sbjct: 79  KDKYLICNADEMEPGAFKDRLLLEGNPHQLIEGMIIAAYAIQANKSYVVLRWAYKEAAEL 138

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+ E   +G +G N    GY +++ +H   G YI GEETA LE+LEGK+  PR KPP
Sbjct: 139 IFKALAEAEQAGYIGQNILGSGYALELYLHTSIGRYIRGEETAHLEALEGKRAIPRSKPP 198

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           + A  GL+G PT VNNVE++  V  I+  G+ W+         GTK++ +SG V  P T 
Sbjct: 199 YSAVSGLFGKPTIVNNVETLCCVSHIVNNGSEWFKNLSLNGVGGTKIYGVSGRVKNPGTW 258

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +  +  E+I +H GG++ G+  L  ++PGG+S   L    +    MDY  +++ GS 
Sbjct: 259 ELPLGTSMREIIFEHAGGMKEGF-RLKGILPGGASTDFLTEEHLD-VNMDYSSVEKAGSR 316

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT  +I++D  T  +  +  L  F+  ESCG CTPCREG  W+ +++  + +G  +  +
Sbjct: 317 LGTGTLIILDDKTCPVGMVHNLEHFFAQESCGWCTPCREGLPWVEKILLSIEEGKGKLED 376

Query: 375 IDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFR 409
           +D+L   + N+  GRT CAL   A  P+Q  IK FR
Sbjct: 377 LDILSFHAVNLGPGRTFCALAPGAVEPLQSSIKYFR 412


>gi|225572064|ref|ZP_03780928.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040499|gb|EEG50745.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
          Length = 584

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 159/426 (37%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
            L+ Q R+     GL   + + + +++G ++   K++    +D +I  VK SGLRGRGGA
Sbjct: 99  FLSQQRRVVLRNCGLINPEKIDEYIAKGGYEAAKKVITTMTQDEVIEVVKVSGLRGRGGA 158

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW+ + K  +    Y+V NADE +PG   DR ++  +PH+L+EG +I  FA GA
Sbjct: 159 GFPTWFKWNAI-KSNAGAQKYMVCNADEGDPGAFMDRSVLEGDPHSLLEGMIIGGFAAGA 217

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
               IY R E+      L+ A+++    G LG N     +  DI +  GAGA++CGEETA
Sbjct: 218 TEGVIYCRAEYPLAIARLEIAMEQAREKGFLGKNLFGTDFSFDIRIKAGAGAFVCGEETA 277

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PRLKPPFPA  G +  PT +NNVE+ A VP I   G   ++  G   ++
Sbjct: 278 LIASLEGERGMPRLKPPFPAAKGYWKLPTNINNVETYANVPWIFANGGEAFAAMGTAQSK 337

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M +   E+I    GGI+    N  AV  GG S  C+PA Q
Sbjct: 338 GTKVFALAGKIKKGGLVEVPMGLPLKEVIYGIGGGIKND-KNFKAVQMGGPSGGCIPA-Q 395

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + Y+ + + G+ +G+  +IVMD +T ++        F K ESCG+C  CR GT  
Sbjct: 396 LIDTPVTYEDINKTGAIVGSGGMIVMDENTCMVDMARYFLDFTKKESCGKCNYCRIGTKR 455

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  +  +I+LL E++  I+   +C LG  A  P+   I+ FR   E+ I 
Sbjct: 456 MLEILERITRGEGKDGDIELLEELAGKIKDGAMCGLGQTAPNPVLTTIRYFRNEYEDHIY 515

Query: 418 QYHRCN 423
             H C 
Sbjct: 516 N-HTCT 520


>gi|89902617|ref|YP_525088.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Rhodoferax ferrireducens T118]
 gi|89347354|gb|ABD71557.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Rhodoferax ferrireducens T118]
          Length = 603

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 153/390 (39%), Positives = 224/390 (57%), Gaps = 22/390 (5%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESE 88
           + + L +G D  + E+K S LRGRGGAGF+TG+KW    ++C   P   H +V NADE E
Sbjct: 196 LTQSLARGADATLAEIKRSNLRGRGGAGFATGLKW----ELCRQAPGTEHIVVCNADEGE 251

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR ++  +   + EG  +A+  +GA   F+Y+RGE+    E LQA +    A  L
Sbjct: 252 PGTFKDRVLLSRQADAVFEGMTVAAHVLGARRGFLYLRGEYRFLLEPLQAVLQRRRAEQL 311

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG++   + G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PPFPA  G  G PT
Sbjct: 312 LGTHILGQAGFDFDIAIHVGAGAYVCGEESALIESLEGKRGTPRIRPPFPAEHGYLGHPT 371

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVE+   V  I + G + ++G G   + GTK+ S+SG    P   E  +      L+
Sbjct: 372 LVNNVETFCAVAHIAQHGGALWAGIGTPKSTGTKIHSVSGDCARPGLYEYPLGTPVSRLL 431

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
              CG       +  AV  GG S  CL A +    I  ++ +   G      A +V DRS
Sbjct: 432 AD-CGA-----RDTQAVQVGGPSGVCLAADEFERRIA-FEDVPTAG------AFMVFDRS 478

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
            D+ +     + F+ HESCG CTPCR GT  +++ M++L  G   + ++D+L+E+ + + 
Sbjct: 479 RDMFEVARGFAHFFAHESCGFCTPCRVGTALLVKRMDKLAGGHGSRDDLDVLFELDRLLH 538

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             T C LG +A  P++  +  FRP  E+R+
Sbjct: 539 STTHCGLGASACNPLRDTVLKFRPAYEQRL 568


>gi|331697101|ref|YP_004333340.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951790|gb|AEA25487.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Pseudonocardia dioxanivorans CB1190]
          Length = 626

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 151/388 (38%), Positives = 226/388 (58%), Gaps = 10/388 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G ++ + + +E G   ++ E+K S L GRGGA F TG+KW  +      RPH
Sbjct: 221 SLDDYRAHGGYEALRRAVELGASRVVRELKDSALTGRGGAAFPTGVKWEGV-ATAQVRPH 279

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV NADESEPGT KDR +M ++P  L+E   IA +A G    ++Y+RGE+      L+ 
Sbjct: 280 YLVCNADESEPGTFKDRVLMEYDPFGLVEAMTIAGWATGCERGYLYIRGEYPLATRRLEH 339

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E    G LG++    G+  DI +  GAGAYICGEETALL S+EG +G+PR KPPFP+
Sbjct: 340 AIEEARRRGFLGADVLGEGFTFDIELRRGAGAYICGEETALLNSIEGFRGEPRNKPPFPS 399

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT +NNVE++  V  +L  G   ++  G E + GTKLF ++G V  P   E  
Sbjct: 400 VSGLFGKPTVINNVETLYNVLQVLDVGGPAFASVGAERSTGTKLFCVAGSVAVPGVYEVE 459

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  EL+    GG+RG    L  ++ GG++   +   Q+    +  +G +E+G+ LG+
Sbjct: 460 FGTTLRELL-TLAGGLRG---ELRTILLGGAAGGFVMPDQL-DVPLTLEGAREIGATLGS 514

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA---QKRE 374
             V+  D   D++  + R++ F++ ESCGQC PCR GT      + RL +G     ++ E
Sbjct: 515 GVVLAFDTDADLVATLRRIAAFFRDESCGQCVPCRVGTVRQEEALARLERGAPLGDRETE 574

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           + LL ++++ +   +IC LG  A   +Q
Sbjct: 575 LALLDDLARVMRDASICGLGQTAPAAVQ 602


>gi|189426182|ref|YP_001953359.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
 gi|189422441|gb|ACD96839.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
          Length = 590

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 163/424 (38%), Positives = 247/424 (58%), Gaps = 13/424 (3%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFST 62
           Q RI  +  G +  +SL   ++   +  ++K ++  +   +  EVK SGLRGRGG GF T
Sbjct: 110 QRRIVMSGCGQIDAESLDAYLATDGFKAIEKCIKTMKPAEVTEEVKKSGLRGRGGGGFPT 169

Query: 63  GMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           G+KWSF    C+  P    Y++ NADE +PG   DR I+  +P+ LIEG +IA +AIGA 
Sbjct: 170 GLKWSF----CAASPGHHKYIICNADEGDPGAFMDRSILEGDPYCLIEGMMIAGYAIGAQ 225

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178
             ++YVR E+    + LQ A+D CY  G LG N   LG++ D+ +  GAGA++CGEETAL
Sbjct: 226 FGYVYVRAEYPLAIDRLQKAIDVCYEKGYLGKNCMGLGFEYDMRIKKGAGAFVCGEETAL 285

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG++G PR +PPFPA  GL+  P+ +NNVE+ A V  I+  GA WY+  G E  +G
Sbjct: 286 MASIEGERGMPRPRPPFPAVKGLWQHPSNINNVETFANVRHIINNGAEWYAAIGTETTKG 345

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G V +   VE    +   E+I   CGGI        AV  GG S  C+PA ++
Sbjct: 346 TKIFAVTGKVKHTGLVEVPAGMKVREVIYDVCGGILNN-RKFKAVQAGGPSGGCIPA-EI 403

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L + G+ +G+  ++VMD +T ++        F + ESCG+C PCR G   M
Sbjct: 404 LDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVSKFFLTFTRMESCGKCVPCRIGLKAM 463

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ R+ +G  ++ +++ L ++   I+  ++C LG  A  P+   I+ FR   E  I  
Sbjct: 464 LDILIRITEGNGREGDLETLIDLGTTIKQASLCGLGQTAPNPVLSTIRYFRDEYEAHITD 523

Query: 419 YHRC 422
             RC
Sbjct: 524 -KRC 526


>gi|88602558|ref|YP_502736.1| NADH dehydrogenase (quinone) [Methanospirillum hungatei JF-1]
 gi|88188020|gb|ABD41017.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Methanospirillum hungatei JF-1]
          Length = 562

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 221/371 (59%), Gaps = 6/371 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D II+EVK SGLRGRGGAGF  G+KW    K   +   ++V NADE +PG   +R+ M  
Sbjct: 185 DAIIDEVKRSGLRGRGGAGFPAGLKWEITKKAPGEE-KFIVCNADEGDPGAYMNRNEMES 243

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH L+EG +I ++A+G     IY+R E+    E L  A+D+    GLLG N    G+D 
Sbjct: 244 DPHMLLEGMLIGAYAMGVSEGLIYIRAEYPLAIERLMLALDQARTYGLLGKNIFNTGFDF 303

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI +  GAGA++CGE TAL  S+EGK G+PRL+PP     G++G PT +NNVE+   VP 
Sbjct: 304 DIRIATGAGAFVCGESTALAASIEGKTGRPRLRPPRLTEKGVFGKPTDLNNVETWCNVPV 363

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI-EKHCGGIRGGWD 278
           I+ +GA WYS  G + N GTK+FS+ G V+    VE  +  +   +I +   GG  G   
Sbjct: 364 IIAKGALWYSSIGAKGNTGTKVFSLVGKVDNIGMVEVPLGTSLHSIIYDIGNGGALG--K 421

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
            + AV  GG S  C+P  ++    +D++ L ++G+ +G+  ++VMD  T+++        
Sbjct: 422 EVKAVQTGGPSGGCIPV-RLFDTPVDFESLNQVGTMMGSGGLVVMDEDTNMVDIARYFIN 480

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F   ESCG+C PCREG   M+ ++ R+V G   +++I LL E+++ ++  ++C LG  A 
Sbjct: 481 FASGESCGKCVPCREGLKHMLLILNRIVAGKGTRQDIGLLRELAETVQKTSLCGLGQTAP 540

Query: 399 WPIQGLIKNFR 409
            P+   ++ F+
Sbjct: 541 NPVLTTMQYFK 551


>gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
 gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
          Length = 622

 Score =  275 bits (703), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 242/413 (58%), Gaps = 9/413 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + + ++ G ++ ++K+L +  ++  ++E+  SGLRGRGGAGF TG KW
Sbjct: 144 VLKNCGHIDAEHIEEYIAVGGYEGLEKVLFDMTKEEGLDEILKSGLRGRGGAGFPTGRKW 203

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           + + K    +  Y+V N DE +PG   DR IM  +PH +IEG +I ++ +GA   +IYVR
Sbjct: 204 AEVAKQ-PVKERYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMIIGAYLVGAQNGYIYVR 262

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    E L+ A+ +    GLLG N    G++  + ++ GAGA++CGE +AL  S+EG 
Sbjct: 263 AEYPLAVERLKIAIAQAEERGLLGDNILGSGFNFRLHINRGAGAFVCGEGSALTASIEGN 322

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR+KPP  A  GL+  PT +NNVE+ A VP I+  G+ WY GFG E + GTK F+++
Sbjct: 323 RGMPRVKPPRSAEKGLFERPTVLNNVETYANVPMIIANGSDWYRGFGTEGSPGTKAFALT 382

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL--LAVIPGGSSVPCLPAGQMRGAIM 303
           G VN    +E  M  T  E++    GG++   DN+   AV  GG S  CL    +    +
Sbjct: 383 GSVNNTGLIEVPMGTTLREIVYDIGGGVK---DNVPFKAVQIGGPSGGCLVEKHLD-LPL 438

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D +K++ + +G+  ++VMD ++ ++        F + ESCG+CTPCR GT  M+ +++
Sbjct: 439 DFDSVKKLNAIMGSGGLVVMDENSCMVDVARFFMSFTQRESCGKCTPCRIGTKRMLEILD 498

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ +G     ++D L E +  +   ++C LG +A  P+   ++ FR   EE I
Sbjct: 499 KITEGKGTLEDLDKLEETANTVRTMSLCGLGKSAPLPVISTLELFRHEYEEHI 551


>gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta thermophila DSM 6578]
          Length = 595

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 151/403 (37%), Positives = 232/403 (57%), Gaps = 5/403 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + +++ ++R  +  ++K+L E   D +I E+K SGLRGRGGAGF T  KW
Sbjct: 117 VLRNCGFINPEDINEYIARDGYAALEKVLLEMSPDEVIEELKKSGLRGRGGAGFPTWRKW 176

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F  +   D   Y+V NADE +PG   DR ++  +PH+++E  +IA   + AH  +IYVR
Sbjct: 177 LFTMQA-KDDVKYVVCNADEGDPGAYMDRSVLEGDPHSVLEAMIIAGKTVEAHKGYIYVR 235

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+      L  A+++    GLLG +    G+  DI +  GAGA++CGEETALL S+EG 
Sbjct: 236 AEYPLAIRRLNIAIEQARELGLLGEDILGSGFSFDIEIRLGAGAFVCGEETALLASIEGS 295

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PPFPA  GL+G PT +NNVE++A +P I+ RG  W++  G E ++GTK+F+++
Sbjct: 296 RGTPRPRPPFPAVKGLWGKPTVINNVETLANIPVIILRGGDWFAKIGTETSKGTKVFALT 355

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    VE  M  T  +++    GGI  G     AV  GG S   +P   +   I DY
Sbjct: 356 GKVNNSGLVEVPMGTTLRDIVFNIGGGIPNG-KKFKAVQTGGPSGGVIPEEYLDTPI-DY 413

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L+++GS +G+  +IVMD    ++        F   ESCG+C PCR G   +  +++R+
Sbjct: 414 ENLQKLGSIMGSGGMIVMDEDDCMVNVAKFYLGFTVDESCGKCAPCRVGGRKLYNILDRI 473

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            KG     +ID + E+S  ++  ++C LG  A  P+   +  F
Sbjct: 474 SKGKGTLEDIDKIKEISHAMKRASLCGLGQTAPNPVLSTLHYF 516


>gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 613

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 157/409 (38%), Positives = 247/409 (60%), Gaps = 9/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTG 63
           Q    TN   +  + + + ++ G +  + + L   + + +I+EVK SGLRGRGG GF TG
Sbjct: 133 QQIALTNCGQINPEDIEEYLAVGGYQALGEALTGMKPEEVIDEVKESGLRGRGGGGFPTG 192

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW F  +   D+  Y++ NADE +PG   DR I+  +PH ++EG +IA +A+G+   +I
Sbjct: 193 LKWQFAQESEGDK-KYIICNADEGDPGAFMDRSILEGDPHKVLEGMIIAGYAVGSDEGYI 251

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180
           YVR E+    + L+ A+ +    GLLG N   ++  +D++I    GAGA++CGEETAL+ 
Sbjct: 252 YVRAEYPLAVKRLREAISQAREYGLLGENLFGTEFSFDINI--KEGAGAFVCGEETALIA 309

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G P+ +PP+PA  GL+G PT +NNVE+ A + TI+  GA  +S  G E ++GTK
Sbjct: 310 SIEGRRGMPQSRPPYPAQEGLWGKPTNINNVETYANISTIITEGAESFSSVGTEESKGTK 369

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +N    VE  M IT +E+I    GGI G  D   AV  GG S  CLP  ++  
Sbjct: 370 VFALAGKINNTGLVEVPMGITVEEIIYDIGGGIPGDKD-FKAVQIGGPSGGCLPEEKLHL 428

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            I DYD L E G+ +G+  ++VMD  T ++        F   ESCG+C PC EGT  M+ 
Sbjct: 429 PI-DYDSLLEAGAMMGSGGLVVMDEDTCMVDVARYFLDFTVSESCGKCAPCSEGTKRMLD 487

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ER+  G  ++ +++ L ++++ I+  ++C LG  A  P+   +K FR
Sbjct: 488 ILERITDGNGKQEDLEQLEKLAEVIKDTSLCGLGQTAPNPVLSTLKYFR 536


>gi|325261423|ref|ZP_08128161.1| protein HymB [Clostridium sp. D5]
 gi|324032877|gb|EGB94154.1| protein HymB [Clostridium sp. D5]
          Length = 1042

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/409 (38%), Positives = 240/409 (58%), Gaps = 6/409 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           ++  SL   ++R  +  + K+L    ++ ++  +K SGLRGRGGAGF TG+KW    K  
Sbjct: 156 MEFSSLEAYIARDGYGAIAKVLGGMSQEDVVAVIKNSGLRGRGGAGFPTGVKWEAGRKAQ 215

Query: 74  S-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
           S D   ++V NADE +PG   DR ++  +PH++IEG ++  +AIGA   +IYVR E+   
Sbjct: 216 SPDGRKFMVCNADEGDPGAFMDRSLLEGDPHSIIEGMMLGGYAIGASRGYIYVRAEYPIA 275

Query: 133 RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
            E L  A+D+  A+G+LG N    G+D D+ +  GAGA++CGEET+LL S+EG++G+PR 
Sbjct: 276 VERLGNAIDQARAAGILGKNIMGSGFDFDVEIRIGAGAFVCGEETSLLASIEGRRGEPRQ 335

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFP   GL+ CPT +NNVE++A V  I+  G+ WY   G   + GTK+F+++G +   
Sbjct: 336 KPPFPFEKGLFECPTIINNVETLANVAPIILNGSEWYRKIGTAGSAGTKVFALAGDIVNA 395

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M     ++I K  GG   G     A+  GG S  CL    +   + DYD L E+
Sbjct: 396 GIIEVPMGTVLGDIIYKI-GGGIIGGKRFKAIQSGGPSGGCLTRAHLNTRV-DYDSLAEL 453

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  ++VM+  T ++        F   ESCG+C PCR GT  M+ ++E + +G  +
Sbjct: 454 GAIMGSGGLVVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTRRMLELLEGITEGKGR 513

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-DQY 419
             ++DLL E+++ I+   +C LG  A  P+   +K FR   E  I D+Y
Sbjct: 514 PEDLDLLEELAETIKQTAMCGLGQTAPNPVLSTLKYFRGEYESHIYDKY 562


>gi|320354167|ref|YP_004195506.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Desulfobulbus propionicus DSM 2032]
 gi|320122669|gb|ADW18215.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Desulfobulbus propionicus DSM 2032]
          Length = 538

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 242/416 (58%), Gaps = 9/416 (2%)

Query: 7   RIFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFS 61
           R   N+  L G+    S+ D ++ G +  V + L + R   +I  V+ SGLRGRGGAG+ 
Sbjct: 115 RQHKNVLALSGRIDPESVDDYLAAGGYLAVVQALTEMRPSDVIRRVQESGLRGRGGAGYP 174

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW+ + K   ++  YL+ NADE +PG   DR I+   PH ++EG +IA++A+GA   
Sbjct: 175 TGLKWATVAKATGEK-KYLICNADEGDPGAFMDRSILESTPHAVLEGMIIAAYAVGATSG 233

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+    + L+ A+ E      LG +      D+DI +  GAGA++CGEETAL++
Sbjct: 234 YIYVRAEYPLAVKRLKLAIREAERLNFLGHAVCGSSLDLDIQLRLGAGAFVCGEETALIQ 293

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G PR +PP+PA  GL+G PT +NNVE+ A VP I+  G    +  G E ++GTK
Sbjct: 294 SVEGKRGIPRPRPPYPAEQGLWGRPTLINNVETYANVPPIIAHGPEKLAALGTEQSKGTK 353

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +     +E  M ++  E++    GGI GG   L AV  GG S  C+PA  +  
Sbjct: 354 VFALTGKIRNSGLIEVPMGMSLREIVFDIGGGIPGG-HALKAVQTGGPSGGCIPAEHLDT 412

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +  ++ L+ +GS +G+  +IV+D +T+++  +     F   ESCGQCTPCR GT  +  
Sbjct: 413 PV-SFESLRALGSIMGSGGMIVIDETTNMVDIVKYFMEFSMDESCGQCTPCRVGTAQIHH 471

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++    +  A   ++  L  +   ++  ++C LG +A  P+   ++ FR    +RI
Sbjct: 472 LLTLFQQSRATLLDLAKLEALCDLVKNTSLCGLGQSAPNPVLSTLRYFRQEYLDRI 527


>gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 595

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 157/395 (39%), Positives = 238/395 (60%), Gaps = 10/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           ++ + ++R  +  + K+L   ++ +INEVKASGLRGRGG GF TG+KW F  K  +D+  
Sbjct: 130 NIEEYIARDGYAALAKVLTMTQEEVINEVKASGLRGRGGGGFPTGLKWEFAYKNKADQ-K 188

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE +PG   DR I+  +P++++E   I  +AIGA    +Y+R E+    + L++
Sbjct: 189 YVVCNADEGDPGAFMDRSILEGDPNSIVEAMAICGYAIGATKGLVYIRAEYPLAIKRLES 248

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A+      GLLG N   S   +D+DI    GAGA++CGEETAL+ S+EG +G+P  KPPF
Sbjct: 249 AIHSAREYGLLGDNIMGSDFCFDIDI--RFGAGAFVCGEETALIHSMEGMRGEPTTKPPF 306

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G +G PT VNNVE+ A +P I+ +GA W+S  G E ++GTK+F+++G +N    +E
Sbjct: 307 PAASGYWGKPTNVNNVETFANIPVIILKGAEWFSKIGTEKSKGTKVFALAGKINNVGLIE 366

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M IT  E+I    GGI+ G     AV  GG S  CL    +   I D+D L   GS +
Sbjct: 367 VPMGITLREVIYDIGGGIKNG-KQFKAVQTGGPSGGCLTVKDLDTPI-DFDNLIAKGSMM 424

Query: 316 GTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           G+  +IV+D   D + A+ +  + F   ESCG+CTPCR GT  ++ ++E++  G   + +
Sbjct: 425 GSGGMIVLDED-DCMPAVAKFYLEFTAEESCGKCTPCRIGTKRLLEILEKITAGKGSEED 483

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + +L E+S+ I+   +C LG  A  P+   +  F 
Sbjct: 484 LKVLKELSEVIKDTALCGLGQTAPNPVLSTLTTFE 518


>gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
 gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
          Length = 599

 Score =  275 bits (702), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 166/422 (39%), Positives = 247/422 (58%), Gaps = 7/422 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  + + + ++   +  ++K+L K     +I+EVKASGLRGRGG GF T
Sbjct: 115 QKRIALANCGVIDPEDIEEYIAFDGYMALEKVLFKMTPQEVIDEVKASGLRGRGGGGFPT 174

Query: 63  GMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           G+KW F     S D   ++  NADE +PG   DR ++  +PH LIE   IA++AIGA   
Sbjct: 175 GLKWQFAYNADSPDGVKFVACNADEGDPGAFMDRSVLEGDPHRLIEAMAIAAYAIGAQKG 234

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++YVR E+    + LQ A+D+    GLLG N     +  D+ +  GAGA++CGEETAL+ 
Sbjct: 235 YVYVRAEYPIAVKRLQIAIDQAKDYGLLGDNVFDTDFSFDLEIRLGAGAFVCGEETALMN 294

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PR +PPFPAN GL+  PT +NNVE+ A +PTI+  GA  ++  G E ++GTK
Sbjct: 295 SVEGKRGEPRPRPPFPANKGLFERPTVLNNVETYANIPTIILEGAESFASVGTEKSKGTK 354

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F++ G +N    +E  M  T  E+I +  GGI  G     A   GG S  C+P+ ++  
Sbjct: 355 VFALGGKINNTGLLEIPMGTTLREVIYEIGGGIPNG-KAFKAAQTGGPSGGCIPSSELDI 413

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            I DYD L  +G+ +G+  +IVMD    ++        F + ESCG+C PCR GT  M+ 
Sbjct: 414 PI-DYDNLISIGAMMGSGGLIVMDEDNCMVDVARFFLDFTQDESCGKCPPCRIGTKRMLE 472

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+  G  ++ +I+ L E+++ I+   +C LG  A  P+   IK FR   E  I +  
Sbjct: 473 ILERICDGQGEEGDIERLEELAEGIKASALCGLGQTAPNPVLSTIKYFRDEYEAHIYE-K 531

Query: 421 RC 422
           RC
Sbjct: 532 RC 533


>gi|116748290|ref|YP_844977.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116697354|gb|ABK16542.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 572

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 167/425 (39%), Positives = 250/425 (58%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGA 58
           +   Q+RI   N   +   S+ + + R  +  + K L + R   ++ E+K SGLRGRGGA
Sbjct: 136 LFKKQERIVLRNTLYIDPLSIEEYIGRDGYAALAKALTRMRPGEVVEEIKRSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTGMKWSF     +  P Y+V N DE +PG   DR ++  +PH++IEG  I   AIGA
Sbjct: 196 GFSTGMKWSF-SAAAAGTPKYVVCNGDEGDPGAFMDRSVLEGDPHSVIEGMAICGRAIGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    E L+ A+ +    GLLG +    G++ DI +  GAGA++CGEETA
Sbjct: 255 EQGYVYVRAEYPLAIERLEHAIRKAREFGLLGKDIFGTGFNFDIEIRIGAGAFVCGEETA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++G+PR +PPFPA  G++G PT +NNVE+ A +P I+ +GA W++  G   ++
Sbjct: 315 LLASVEGRRGEPRPRPPFPAIEGVFGKPTVINNVETWANIPAIIFKGADWFASIGTPKSK 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M  T  E++    GGI    +   AV  GG S  C+PA  
Sbjct: 375 GTKVFALAGKITNTGIVEVPMGTTLREMVFDIGGGIPKKKE-FKAVQTGGPSGGCIPARH 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I DYD L  +G+ +G+  +IVMD+ T ++        F   ESCG+C+PCR GT  
Sbjct: 434 LDTPI-DYDSLGALGAIMGSGGMIVMDQDTCMVDIAKFFLEFCVDESCGKCSPCRIGTKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ER+  G  ++ +I+LL E++  I+   +C LG  A  P+   I+ FR   E+ I 
Sbjct: 493 MHEILERISTGHGREGDIELLVELATTIKTTALCGLGQTAPNPVLSTIRYFRDEYEQHI- 551

Query: 418 QYHRC 422
           + H C
Sbjct: 552 RDHVC 556


>gi|290956204|ref|YP_003487386.1| respiratory chain oxidoreductase [Streptomyces scabiei 87.22]
 gi|260645730|emb|CBG68821.1| putative respiratory chain oxidoreductase [Streptomyces scabiei
           87.22]
          Length = 610

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/387 (40%), Positives = 218/387 (56%), Gaps = 18/387 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
            SL D  + G +  + +    G   +I EV  SGL GRGGA F TG KW        D+P
Sbjct: 220 SSLDDYRAHGGYAALRRAFALGPAGVIREVTDSGLVGRGGAAFPTGRKWQATASQ-PDQP 278

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
           HYLV NADESEPGT KDR ++  +P +L+E   IA +A GAH  ++Y+RGE+ R    L+
Sbjct: 279 HYLVCNADESEPGTFKDRVLLEGDPFSLVEAMTIAGYATGAHRGYLYLRGEYPRALRRLE 338

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ +  A GLLG +    GY  DI +  GAGAYICGEETAL  S+EG +G+PR KPPFP
Sbjct: 339 NAIAQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYRGEPRSKPPFP 398

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT  NNVE++  V  IL  GA  Y+  G   + G KLF +SG V+ P   E 
Sbjct: 399 VEKGLFGKPTVENNVETLVNVLPILALGAPAYASIGTARSTGPKLFCVSGSVDRPGIYEL 458

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMG 312
                  +L+     G+R   D L AV+ GG++      G +R   +D    ++G +E G
Sbjct: 459 PFGAALGDLLT--LAGVR---DRLRAVLLGGAA-----GGFVRPDELDIPLTFEGTREAG 508

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK--GIA 370
           + LG+  V+  D +  + + + R++ F++ ESCGQC PCR GT      + R+ +  G A
Sbjct: 509 TTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIAERTGAA 568

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAA 397
              +I LL EV + +   +IC LG  A
Sbjct: 569 AAGDIALLREVGRAMRDASICGLGQTA 595


>gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Halanaerobium praevalens DSM 2228]
          Length = 601

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/415 (38%), Positives = 245/415 (59%), Gaps = 6/415 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  +++ + ++ G ++   K+L E     +++ VK SGLRGRGG GF T
Sbjct: 117 QQRIALANCGQIDPEAIDEYIALGGYEAAGKVLTEMDAQEVVDTVKDSGLRGRGGGGFPT 176

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW F      D+  Y++ NADE +PG   DR I+  +PH +IEG +IA++ IGA   +
Sbjct: 177 GLKWQFAKNSDGDK-KYVICNADEGDPGAFMDRSILEGDPHRVIEGMLIAAYGIGADEGY 235

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           +Y R E+    + L+ A+ +    GLLG N     +D  + +  GAGA++CGEETAL+ S
Sbjct: 236 VYARAEYPLAIKRLEKAIKDAEEYGLLGKNIFSSNFDFKLHIKKGAGAFVCGEETALMNS 295

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G P  +PP+PA  GL+G PT +NNVE+ A +P I+  GA+ +S  G E + GTK+
Sbjct: 296 IEGKRGMPIPRPPYPAKKGLWGKPTNINNVETYANIPFIINEGAAEFSKIGTEGSSGTKV 355

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G +N    VE  M  T  E+I +  GG+  G     AV  GG S  CLP   +   
Sbjct: 356 FALTGKINNTGLVEVPMGTTLKEVIYEIGGGLNKG-KKFKAVQTGGPSGGCLPEDYLDLP 414

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I DYD L + G+ +G+  ++VMD  + ++        F + ESCG+CTPCREGT  M+ +
Sbjct: 415 I-DYDSLLDAGTMMGSGGMVVMDEDSCMVDVARFFLNFTQSESCGKCTPCREGTKRMLEI 473

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + R+ +G  ++ +I+LL E+  +I+  ++C LG +A  P+   I+ FR   E  I
Sbjct: 474 LNRITEGEGKEGDIELLLELGDHIKSTSLCGLGQSAPNPVLSTIRYFRDEYEAHI 528


>gi|225026580|ref|ZP_03715772.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353]
 gi|224956072|gb|EEG37281.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353]
          Length = 656

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/412 (38%), Positives = 240/412 (58%), Gaps = 7/412 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + + ++ G + +  K+L E+  + +I  +  S LRGRGG GF TG KW
Sbjct: 177 VLKNCGHIDAEHIEEYIAVGGYQSFAKVLFEQTPNDVIETILESNLRGRGGGGFQTGYKW 236

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             + +   ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+GA   +IYVR
Sbjct: 237 KQVARQ-QEKIRYIVCNGDEGDPGAFMDRSIMEGDPHKMIEGMLIAAYAVGAQEGYIYVR 295

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184
            E+      L+ A+ +    GLLG +  LG D    +H   GAGA++CGE +AL  S+EG
Sbjct: 296 AEYPLAISRLRLAISQAEDRGLLGEHI-LGTDFSFHLHINRGAGAFVCGEGSALTASIEG 354

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+G PR+KPP     GL+  PT +NNVE+ A VP I+ +GA WY   G EN+ GTK F++
Sbjct: 355 KRGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIIEKGAKWYRSIGPENSPGTKAFAL 414

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V     +E  M  +  E+I    GGI+G      AV  GG S  CL    +  + +D
Sbjct: 415 TGSVKNTGLIEVPMGTSLREVIYDIGGGIKGDA-KFKAVQIGGPSGGCLITPHLDVS-LD 472

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D LK+MG+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  M+ ++ER
Sbjct: 473 FDSLKKMGAMIGSGGLVVMDDKTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 532

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +V G   + ++DLL E++  I    +C LG +AA P+   ++ FR   EE +
Sbjct: 533 IVAGKGTREDLDLLDELASTITDTALCGLGKSAALPVMSTLRLFRKEYEEHV 584


>gi|114566201|ref|YP_753355.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337136|gb|ABI67984.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 590

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 160/422 (37%), Positives = 247/422 (58%), Gaps = 8/422 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ D   +  +  + K+L K   + +I E++ S LRGRGGA
Sbjct: 99  FLQQQLRIVLRNCGRIDPESIDDYRRQDGYSALQKVLAKMSPEEVIEEIEVSALRGRGGA 158

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    +       Y++ NADE +PG   DR I+  +PH ++EG +IA++AIGA
Sbjct: 159 GFLTGLKWK-ATREAGGLYRYIICNADEGDPGAFMDRSILEGDPHAVLEGMIIAAYAIGA 217

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEET 176
               IY R E+    + L+ A+ +    GLLG    LG D   DI +  GAGA++CGEET
Sbjct: 218 EQGIIYCRAEYPLAVKRLEIAIAQARQKGLLGQRI-LGSDFSFDISIQQGAGAFVCGEET 276

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ SLEG++G PRLKPP+P+  GL+G P+++NNVE++A VP I+R G   ++  G   +
Sbjct: 277 ALIASLEGERGMPRLKPPYPSESGLWGYPSSINNVETLANVPWIIRNGGEAFAALGSRES 336

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F+++G +     VE  M  T  E+I    GG++ G   + AV  GG S  C+PA 
Sbjct: 337 KGTKVFALAGKIERGGLVEVPMGTTLREIIYGIGGGVKTG-RRIKAVQMGGPSGGCIPA- 394

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           ++    +DY  L   G+ +G+  ++V+D S+ ++        F + ESCG+C  CR GT 
Sbjct: 395 ELLDIPVDYQSLSNTGAIMGSGGMVVLDESSCMVDLARFFLDFTQKESCGKCVQCRIGTK 454

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ER+ +G  Q+ +I+LL E+S +I   ++C LG +A  P+   I+ FR   E  I
Sbjct: 455 RMLEILERICQGEGQEGDIELLEELSAHISENSLCGLGQSAPNPVLTTIRYFRDEYEAHI 514

Query: 417 DQ 418
            +
Sbjct: 515 RE 516


>gi|114567216|ref|YP_754370.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338151|gb|ABI68999.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 604

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/426 (38%), Positives = 254/426 (59%), Gaps = 17/426 (3%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFST 62
           Q R+     GL    SL D + RG +  ++K +L+   + +I E+  SGLRGRGG GF T
Sbjct: 122 QTRVALRNVGLIDPSSLQDYLERGGYRTLEKSLLDMRPEQVIEEIIKSGLRGRGGGGFPT 181

Query: 63  GMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           G+KW    K C+    +P Y++ N DE +PG   D  IM  +PH+++EG +IA++A+GA 
Sbjct: 182 GLKW----KACAATPAQPRYIICNGDEGDPGAFMDESIMEGDPHSVLEGMIIAAYAVGAS 237

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEET 176
             FIYVR E+ +   SL+ A++E    G LG N   S L ++++I+   G GA++CGEET
Sbjct: 238 NGFIYVRDEYAQSVASLRKAIEEAENHGFLGENILGSALSFNIEIV--RGGGAFVCGEET 295

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EG  G+PR K  FP+  GL+G PT +NNVE+ A +P I+ RGASW++  G E +
Sbjct: 296 ALIASIEGNVGEPRDKYVFPSEKGLWGQPTIINNVETWANIPVIMERGASWFTSLGTEGS 355

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+FS+ G V     VE  M  T  E+I    GG+  G  +  AV  GG S  C+P+ 
Sbjct: 356 KGTKVFSLVGKVANTGLVEVPMGTTLREIIFDIGGGVPKG-RSFKAVQTGGPSGGCIPS- 413

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           ++    +D+D L + GS +G+  +IVMD  T +++ +     F   ESCG+C PCREG  
Sbjct: 414 ELLDLKVDFDSLSQAGSMMGSGGLIVMDDRTCMVEVVRYYLSFLAGESCGKCVPCREGIK 473

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++ ++ R+  G  +  +I LL ++++ ++  ++CALG  A+ P+   ++ FR    E I
Sbjct: 474 CLLEILTRICHGQGEIGDIALLEDIAETMQQASLCALGRTASNPVLSTLRYFREEYLEHI 533

Query: 417 DQYHRC 422
           +   RC
Sbjct: 534 EG-QRC 538


>gi|164687260|ref|ZP_02211288.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
 gi|164603684|gb|EDQ97149.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
          Length = 584

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/419 (36%), Positives = 241/419 (57%), Gaps = 6/419 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGA 58
           ++  Q RI   N   +  + + + ++R  +   +K+L    D  +I+ +K SGLRGRGGA
Sbjct: 98  LMKKQKRIVLRNCGSINPEEIDEYIARDGYKATEKVLTTMTDEEVIDVIKVSGLRGRGGA 157

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW+   +  +D+  Y+V NADE +PG   DR ++  +PH+L+EG +I  +A+GA
Sbjct: 158 GFPTWFKWNAARQNKADQ-KYIVCNADEGDPGAFMDRAVLEGDPHSLLEGMIIGGYAMGA 216

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
               IYVR E+    + L+ A+ +    G LG N    G+D DI +  GAGA++CGEETA
Sbjct: 217 TEGVIYVRAEYPLAIKRLEIAIAQAKERGYLGKNIFSSGFDFDIRIKEGAGAFVCGEETA 276

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PRLKPPFPA  G +  PT +NNVE+ A V  I+  G   +   G + + 
Sbjct: 277 LIASLEGERGMPRLKPPFPAQKGYWQKPTNINNVETYANVAWIMLNGGDTFGSMGTKTSN 336

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M I+  E+I    GGI+   +   AV  GG S  C+PA  
Sbjct: 337 GTKVFALAGKIKKGGLVEVPMGISLREVIYDIGGGIKEDKE-FKAVQMGGPSGGCIPASL 395

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   + DY+ + + G+ +G+  +IVMD +T ++        F + ESCG+C  CR GT  
Sbjct: 396 IDTPV-DYENINKTGAIVGSGGMIVMDETTCMVDMARYFLDFTRKESCGKCNYCRIGTKR 454

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M+ ++ER+  G  +  +I+LL E++  ++   +C LG  A  P+   +K FR   E+ I
Sbjct: 455 MLEILERITNGEGKDGDIELLEELAYKVKDGAMCGLGQTAPNPVITTLKYFRHEYEDHI 513


>gi|255994340|ref|ZP_05427475.1| protein HymB [Eubacterium saphenum ATCC 49989]
 gi|255993053|gb|EEU03142.1| protein HymB [Eubacterium saphenum ATCC 49989]
          Length = 593

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            +T Q RI     GL   + + D +S G ++     L EK  + +I E+K SGLRGRGGA
Sbjct: 108 FITRQQRIVLRNCGLINPEKIEDYISEGGYEAARIALTEKTPEEVIEEIKKSGLRGRGGA 167

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW+      +D+  Y+V NADE +PG   DR ++  +PH L+EG +I  +AIGA
Sbjct: 168 GFPTWFKWNAARSNEADQ-KYIVCNADEGDPGAFMDRSVLEGDPHALLEGMLIGGYAIGA 226

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IYVR E+    + L+ A+++   +  LG N    G+D D+ +  GAGA++CGEETA
Sbjct: 227 TKGVIYVRAEYPLAIKRLENAMEQARKANYLGDNILGSGFDFDLYIKAGAGAFVCGEETA 286

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PRLKPPFPA  G +  PT +NNVE++A V  I++ G   ++ FG   ++
Sbjct: 287 LIASIEGERGMPRLKPPFPAQKGFWKKPTNINNVETLANVAWIIKNGGDKFAEFGLGESK 346

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +      E  + +   ++I    GGI+       AV  GG S  C+PA +
Sbjct: 347 GTKVFALAGKIKKGGLCEVPLGMPLRDVIYNIGGGIKNDR-KFKAVQMGGPSGGCIPA-E 404

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + Y+ + + G+ +G+  +IVMD  T ++        F + ESCG+C  CR GT  
Sbjct: 405 LIDTKVTYEDIVKTGAIVGSGGMIVMDEDTCMVDMARYFLDFTRKESCGKCIYCRLGTKR 464

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  +  +I+LL E+S  ++  ++C LG  A  P+   IK FR   E+ I 
Sbjct: 465 MLEILERITQGKGKDGDIELLLELSNKVKEGSMCGLGQTAPNPVLTTIKYFRHEYEDHI- 523

Query: 418 QYHRCN 423
             H+C 
Sbjct: 524 YNHKCT 529


>gi|298528321|ref|ZP_07015725.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511973|gb|EFI35875.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 615

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/403 (38%), Positives = 237/403 (58%), Gaps = 9/403 (2%)

Query: 18  KSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+   ++R G++     + E   + I+ E++ SGLRGRGGAGF   +KW F  +  S  
Sbjct: 149 ESIDQYIARDGYFAAARALTEMAPEDILQEMQKSGLRGRGGAGFPVHLKWKFAYRETSGV 208

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ NADE +PG   DR I+   PH+++EG +IA+  I A   FIY R E+    E +
Sbjct: 209 -KYVLCNADEGDPGAFMDRSILEANPHSVLEGMLIAARTINADQGFIYCRTEYPLALERV 267

Query: 137 QAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           Q A+D     GLLGS+   S  G+D++I  + GAGA++CGEETAL+ S+EG +G PR +P
Sbjct: 268 QIAIDRAREYGLLGSDILGSGFGFDLEI--YQGAGAFVCGEETALMRSIEGGRGMPRPRP 325

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GL+  PT +NNVE++A VP I++ G  WY+G G  +++GTK+F++SG V     
Sbjct: 326 PFPAQKGLWDRPTVLNNVETLANVPLIIQAGGDWYAGVGTRHSKGTKVFALSGDVRNIGL 385

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           VE  M  +   +I    GGI G  +   AV  GG S  C+PA  +   + DY+ +   G+
Sbjct: 386 VEVPMGTSLRSIIYDIGGGIPGKRE-FKAVQLGGPSGGCVPAEYLDLPV-DYEAISRAGA 443

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +G+  +IVMD+ T ++        F + ESCG+CTPCREGT  ++ +++R+  G    +
Sbjct: 444 IMGSGGMIVMDQRTCMVDMARFFMDFVQEESCGKCTPCREGTMRILEILDRIRAGEGVIQ 503

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++  L ++S  I   ++C LG  A  P+   +K F    E+ I
Sbjct: 504 DLWELEDLSATIRDSSLCGLGQTAPNPVLSTLKYFPKEYEDHI 546


>gi|300245945|gb|ADJ94030.1| putative respiratory-chain NADH dehydrogenase domain [Clostridia
           bacterium enrichment culture clone BF]
          Length = 603

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/420 (37%), Positives = 251/420 (59%), Gaps = 8/420 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
            +  Q RI     G +  +S+   ++   +  + K L+    + +I E+  SGLRGRGG 
Sbjct: 114 FIDKQQRILLKNCGVINPESIDSYLAVDGYKAIQKALKSMAPEQVIAEIDRSGLRGRGGG 173

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFST  KWSF  K    R  Y++ NADE +PG   DR ++   PH+++EG +IA +A+GA
Sbjct: 174 GFSTATKWSFARK-SPGREKYVICNADEGDPGAFMDRSVLESNPHSVLEGMLIAGYAMGA 232

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEET 176
              ++Y+R E+    + L+AA+ +  A G LG N  LG D    I++  GAGA++CGEET
Sbjct: 233 QTGYVYIRAEYPLAIKRLKAAISQAEAKGFLGGNI-LGSDFSFRIMIREGAGAFVCGEET 291

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EGK+G PR++PP+P   GL+G PT++NNVE+ A VP I+  GA  ++ +G E +
Sbjct: 292 ALIMSVEGKRGMPRIRPPYPVEAGLWGKPTSINNVETFANVPWIILNGADAFNRYGTETS 351

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F+++G +     +E  M IT +E++    GG+  G   L AV  GG S  C+PA 
Sbjct: 352 KGTKVFALAGSIARGGLIEVPMGITINEIVFDIGGGLASG-RKLKAVQTGGPSGGCIPA- 409

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DY+ LK++G+ +G+  +++MD ST ++        F + ESCG+CT CR GT 
Sbjct: 410 SLADTPVDYESLKKIGAIMGSGGLLIMDESTCMVDVAKFFLNFTQEESCGKCTFCRVGTR 469

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M++++ R+  G  +  +I++L ++ + I   ++C LG +A  P+   IK FR   E  I
Sbjct: 470 QMLKILNRITDGEGKDGDIEMLEDLGQKISAGSLCGLGQSAPNPVLTTIKYFRSEYEAHI 529


>gi|153812806|ref|ZP_01965474.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
 gi|149831166|gb|EDM86255.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
          Length = 623

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 155/420 (36%), Positives = 240/420 (57%), Gaps = 8/420 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ + ++ G +  + K   +     +I+EV  SGLRGRGGA
Sbjct: 136 FLNQQTRIVLENCGNINAESIDEYIAVGGFQAMAKAFFDMSPQDVIDEVTKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS + +   ++  Y+V N DE +PG   D  +M  +P+ +IEG  IA++A+GA
Sbjct: 196 GFPAGKKWSQVARQ-KEKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176
              +IYVR E+    + L+ A+++  A GLLG N  LG  V+  +H   GAGA++CGE +
Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEAYGLLGDNI-LGSGVNFHLHINRGAGAFVCGEGS 313

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I+ +GA W+   G E +
Sbjct: 314 ALTASIEGKRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILQGADWFRTIGTEGS 373

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK FS++G +     +E  M  +   +I    GG++ G      V  GG S  CL   
Sbjct: 374 PGTKTFSLTGAIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIED 432

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           Q+    +D+D +K + + +G+  ++VMD +T +++       F + ESCG+C PCREGT 
Sbjct: 433 QIDRP-LDFDSVKSLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTK 491

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ER+V G  +  ++D L E++  ++   +C LG +A  P+   +K FR   EE I
Sbjct: 492 RMLEILERIVDGKGEMSDLDELEELATMVQSMALCGLGKSAPLPVISTLKRFRDEYEEHI 551


>gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
 gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
          Length = 600

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 153/379 (40%), Positives = 232/379 (61%), Gaps = 4/379 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+E+K SGLRGRGG GF TG+KW F     SD+  Y++ NADE +PG   DR ++  +P
Sbjct: 157 VIDELKESGLRGRGGGGFPTGLKWQFARNTESDK-KYVICNADEGDPGAFMDRSLLEGDP 215

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H +IEG +IA++AIGA   ++YVR E+      L+ A+ +    GLLG N    G+D  +
Sbjct: 216 HVIIEGMMIAAYAIGADEGYVYVRAEYPLAITRLEKAIKDAEEYGLLGENIFNSGFDFKL 275

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETAL+ S+EGK+G P+ +PP+P+  GL+G PT +NNVE+ A VP I+
Sbjct: 276 HIKKGAGAFVCGEETALMNSIEGKRGMPKPRPPYPSVSGLWGKPTNINNVETFANVPFII 335

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             G+  +S  G E++ GTK+F+++G +N    VE  M  T  E+I +  GG+        
Sbjct: 336 NEGSEAFSSIGTESSAGTKVFALTGKINNTGLVEVPMGTTLREVIFEIGGGLDKN-KKFK 394

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  CLP   +   I DYD L + G+ +G+  ++VMD  + ++        F +
Sbjct: 395 AVQTGGPSGGCLPEEYLNLPI-DYDSLLDAGTMMGSGGMVVMDEDSCMVDVARFFLNFTQ 453

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+CTPCREGT  M+ ++ R+  G  ++ +I+LL E+  +I+  ++C LG +A  P+
Sbjct: 454 SESCGKCTPCREGTKRMLEILNRITTGEGREGDIELLEELGDHIKSTSLCGLGKSAPNPV 513

Query: 402 QGLIKNFRPLIEERIDQYH 420
              I +FR   E  I + +
Sbjct: 514 LSTITHFRKEYEAHIHKQN 532


>gi|124514972|gb|EAY56483.1| NADH dehydrogenase (Quinone) subunit F [Leptospirillum rubarum]
          Length = 627

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 159/399 (39%), Positives = 233/399 (58%), Gaps = 8/399 (2%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGF 60
           L ++  +FT L   + + L        +  ++ +L+ G  +    +++ SG+ GRGG  F
Sbjct: 175 LANEPVVFTGLRSGETRYLERYREDHGYRALEGLLKTGDAEAAFEQIRLSGVAGRGGGAF 234

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               K   + K  +  P YLV NADE EPGT KDR IM  +PH+LIEG  IA+  IGA  
Sbjct: 235 PMYRKLDAVRK--NPPPRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGAEE 292

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETAL 178
            FIY+R E+      L+ A+ E  ++GLLG    LG D    + ++ GAGAYICGEET+L
Sbjct: 293 GFIYLRSEYPHSFHILEKAIAEARSAGLLGPRI-LGSDFSFRLRLYRGAGAYICGEETSL 351

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + SLEGK+  PR KPP  + VGL+G PT   NVE++A +P ILR G  WY+  G   + G
Sbjct: 352 INSLEGKRAYPRNKPPHLSEVGLWGKPTEEQNVETLANLPAILRNGGDWYARLGDTKSPG 411

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF +SGH+  P   E  + ++   LIE   GGI GG  +L  ++P GS+   L    +
Sbjct: 412 TKLFCLSGHIARPGLYEIPLGMSLRSLIEDLGGGIPGG-RSLKGLLPAGSASKMLLPRHL 470

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             + +DY  + E+G+ LG+A+VIVMD S  ++   + ++ F  HESCGQCTPCR+GT  +
Sbjct: 471 DLS-LDYPSIAEVGAFLGSASVIVMDDSVCMVDLAYWIAAFSHHESCGQCTPCRDGTEDV 529

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
             ++ ++V+G  +   +DLL  +   +   +IC LG +A
Sbjct: 530 YEILLKIVQGEGKPAYLDLLKSIGTYMREASICGLGQSA 568


>gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 626

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 152/422 (36%), Positives = 245/422 (58%), Gaps = 7/422 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q R+     G +  + +++ ++ G +  +  +L     + +I E+K SGLRGRGGAGF T
Sbjct: 144 QQRVVLERCGYINPEDIAEYIAAGGYRALTSVLFSLSPEEVIEEIKKSGLRGRGGAGFPT 203

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW    +V S +  Y++ NADE +PG   DR ++  +PH +IEG +I  +AIG+   +
Sbjct: 204 GKKWEAARRVPSSK-RYVICNADEGDPGAFMDRALLEGDPHAVIEGMIICGYAIGSDEGY 262

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           +YVR E+    + L+ A+++ YA+GLLG N    G+   + ++ GAGA++CGE TAL+ S
Sbjct: 263 VYVRAEYPLAVKRLRIAIEQAYAAGLLGENILGSGFSFHLHINEGAGAFVCGESTALMAS 322

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG +G PR+K P     GL+G PT +NNVE+ A VP I+ RG+ W++  G + ++GTK+
Sbjct: 323 IEGNRGIPRIKVPRSTEKGLFGKPTVLNNVETFANVPLIILRGSQWFANIGTKGSKGTKI 382

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F++SG V +   VE  M  T  ELI    GG   G     A+  GG S  C+P   M   
Sbjct: 383 FALSGKVKHTGLVEVPMGTTLKELIFDI-GGGIKGGKRFKALQIGGPSGGCIPE-DMLDL 440

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ L   G+ +G+ +++VMD    ++        F + ESCG+CTPCREGT  M+ +
Sbjct: 441 PIDYESLTGAGAMMGSGSIVVMDEDNCMVNTARFFLNFTERESCGKCTPCREGTKQMLNI 500

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +ER+ +G     ++ LL  + + ++  + C LG +A  P+   ++ FR    + + +  R
Sbjct: 501 LERITRGEGSPSDLSLLEFLGQVVKATSFCGLGTSAPNPVLTTLRFFRSEYLQHVTE-RR 559

Query: 422 CN 423
           C+
Sbjct: 560 CS 561


>gi|206603893|gb|EDZ40373.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 634

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 158/399 (39%), Positives = 233/399 (58%), Gaps = 8/399 (2%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGF 60
           L ++  +FT L   + + L        +  ++ +L+ G  +    +++ SG+ GRGG  F
Sbjct: 182 LANEPVVFTGLRAEKTRYLERYREDHGYRALESLLKTGDAEAAFEQIRLSGVAGRGGGAF 241

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               K   + K  +  P YLV NADE EPGT KDR IM  +PH+LIEG  IA+  IGA  
Sbjct: 242 PMYRKLDAVRK--NPPPRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGAEE 299

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETAL 178
            FIY+R E+      L+ A+ E   +GLLG    LG D    + ++ GAGAYICGEET+L
Sbjct: 300 GFIYLRSEYPHSFHILEKAIAEARNAGLLGPRI-LGSDFSFRLRLYRGAGAYICGEETSL 358

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + SLEGK+  PR KPP  + VGL+G PT   NVE++A +P+ILR G  WY+  G   + G
Sbjct: 359 INSLEGKRAYPRNKPPHLSEVGLWGKPTEEQNVETLANLPSILRNGGDWYARLGDVKSPG 418

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF +SGH+  P   E  + ++   LIE   GGI GG  +L  ++P GS+   L    +
Sbjct: 419 TKLFCLSGHIARPGLYEIPLGMSLRSLIEDLGGGIPGG-RSLKGLLPAGSASKMLLPRHL 477

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             + +DY  + E+G+ LG+A+VIVMD S  ++   + ++ F  HESCGQCTPCR+GT  +
Sbjct: 478 DLS-LDYPSIAEVGAFLGSASVIVMDDSVCMVDLAYWIAAFSHHESCGQCTPCRDGTEDV 536

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
             ++ ++++G  +   +DLL  +   +   +IC LG +A
Sbjct: 537 YEILLKIIQGEGKPAYLDLLKSIGTYMREASICGLGQSA 575


>gi|150390845|ref|YP_001320894.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149950707|gb|ABR49235.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 582

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 159/420 (37%), Positives = 241/420 (57%), Gaps = 10/420 (2%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
           L  Q RI     GL   +++   + +  ++ + K + E     +I E+K S +RGRGGAG
Sbjct: 97  LRKQKRIALKNCGLIDPQNIHHYIDQNGYEAIKKCIGEMTPAEVIEEIKVSNIRGRGGAG 156

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW+   +  ++ P Y+V NADE +PG   DR I+  +PH +IEG +IA++AIGA 
Sbjct: 157 FPTWFKWNAAMQ-SNEYPKYIVCNADEGDPGAFMDRSILEGDPHAIIEGMMIAAYAIGAQ 215

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEET 176
              +YVR E+    E LQ A+ +     LLG    NS+  +D+   V  GAGA++CGEET
Sbjct: 216 YGVVYVRAEYPLAIERLQKAILQAKELNLLGDHIFNSQFQFDIK--VKAGAGAFVCGEET 273

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ SLEG++G PRLKPPFPA  GL+  PT +NNVE+ A +P I+ +G   ++  G  N+
Sbjct: 274 ALIASLEGERGMPRLKPPFPAEKGLWQKPTNINNVETFANIPWIINQGGKAFADIGVNNS 333

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F+++G +     VE  M  +  E+I    GGI    D   A+  GG S  C+P  
Sbjct: 334 QGTKVFALTGKIRDGGLVEVPMGTSLQEIIFDIGGGILNDRD-FKALQLGGPSGGCVP-N 391

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +   I+DY+ + + G+ +G+  ++VMD +T ++        F   ESCG+C  CR GT 
Sbjct: 392 ALLDTIVDYESVTKTGAIMGSGGMVVMDDTTCMVDMAKFFLDFTCKESCGKCIHCRLGTK 451

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ R+ +G  Q  +I+LL E+   I+  ++C LG  A  P+   IK FR   E+ I
Sbjct: 452 RMLEILTRITEGHGQTGDIELLEELGSGIKEGSLCGLGQTAPNPVLSTIKYFREEYEKHI 511


>gi|218441075|ref|YP_002379404.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424]
 gi|218173803|gb|ACK72536.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424]
          Length = 530

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 146/384 (38%), Positives = 235/384 (61%), Gaps = 5/384 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G+      + E     +I+E++ SGLRGRGG G+ TG+KW+ + K+   +  Y++ N DE
Sbjct: 140 GYQSLYKALYEMSSPEVISEIQKSGLRGRGGGGYPTGLKWATVAKM-PGKQKYVICNGDE 198

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR I+  +PH ++EG  IA++A+GA   +IYVR E+    + L+ A+ +    
Sbjct: 199 GDPGAFMDRSILESDPHLVLEGMAIAAYAVGADHGYIYVRAEYPLAIKRLEKAIAQAKKY 258

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           G+LGS   +  +D  I +  GAGA++CGEETAL+ S+EG++G PR +PP+PA VGL+GCP
Sbjct: 259 GILGSQIFESPFDFKIDIRIGAGAFVCGEETALIHSIEGQRGNPRTRPPYPAEVGLWGCP 318

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T +NNVE+ A +  I+R+G  WYS  G E ++GTK+F+++G +     +E  M IT  E+
Sbjct: 319 TLINNVETYANIAAIIRKGGDWYSSIGTETSKGTKIFALTGKIRNNGLIEVPMGITLREI 378

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           +E+  GG+  G   + AV  GG S  C+PA  +   + DY+ L ++GS +G+  ++VMD+
Sbjct: 379 VEEMGGGVPDG--EVKAVQTGGPSGGCIPADLLDTPV-DYNSLTKLGSMMGSGGMVVMDK 435

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
            T +++       F + ESCG+C PCR GT  M  ++++LV   A   +I+ L  +   +
Sbjct: 436 ETSMVEVAKFYMEFCQEESCGKCVPCRAGTVQMYELLKKLVNRQATPADIEKLEALCLAV 495

Query: 386 EGRTICALGDAAAWPIQGLIKNFR 409
           +  ++C LG +A  P+   +  FR
Sbjct: 496 KETSLCGLGQSAPNPVLSTLHYFR 519


>gi|21224862|ref|NP_630641.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|4007678|emb|CAA22364.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor
           A3(2)]
          Length = 646

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 161/397 (40%), Positives = 221/397 (55%), Gaps = 18/397 (4%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G +  + +    G   +I EV  +GL GRGGA F TG KW        D PH
Sbjct: 257 SLDDYRAHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQAT-AAQPDHPH 315

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV NADESEPGT KDR +M  +P+ L+E   IA++A GAH  ++Y+RGE+ R    L  
Sbjct: 316 YLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTH 375

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+++    GLLG +    GY  DI +  GAGAYICGEETAL  S+EG++G+PR KPPFP 
Sbjct: 376 AIEQARTRGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGRRGEPRSKPPFPV 435

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT  NNVE++  V  IL  GA  Y+  G   + G KLF +SG V  P   E  
Sbjct: 436 EKGLFGKPTVENNVETLVNVLPILTMGAEAYAAIGTPTSTGPKLFCVSGTVARPGVYELP 495

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGS 313
              T  EL+     G+R   DNL AV+ GG++      G +R   +D    ++G +E G+
Sbjct: 496 FGATLGELLA--LAGVR---DNLRAVLLGGAA-----GGFVRPDELDIPLTFEGTREAGT 545

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV--KGIAQ 371
            LG+  V+  D +  + + + R++ F++ ESCGQC PCR GT      + R+    G A 
Sbjct: 546 TLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIADRTGAAA 605

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             +I LL EV + +   +IC LG  A   ++  I   
Sbjct: 606 ADDIALLREVGRAMRDASICGLGQTAWNAVESAIDRL 642


>gi|288572802|ref|ZP_06391159.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568543|gb|EFC90100.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 589

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 155/423 (36%), Positives = 238/423 (56%), Gaps = 18/423 (4%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + + + R  +D + K++     + +  EV  SGLRGRGGAGF TG+KW
Sbjct: 111 VLRNCGIIDPEKIDEYIEREGYDALKKVVSSMTSEQVYTEVLDSGLRGRGGAGFPTGLKW 170

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F      D   Y+V NADE +PG   DR ++  +PH +IEG  I  +AIGA    IY R
Sbjct: 171 KFANLSKGDE-KYVVCNADEGDPGAFMDRSVLEGDPHAIIEGMAICGYAIGASHGIIYCR 229

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    ++L  A+++    G LG +    G+  D+ +  GAGA++CGEETAL+ S+EGK
Sbjct: 230 AEYPLAIKNLNIAIEQAKERGFLGEDIMGSGFSFDLKIKEGAGAFVCGEETALIASIEGK 289

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PPFPA  G++G PT +NNVE+ A V  I+R G+  +S +G   +RGTK+F+++
Sbjct: 290 RGMPRPRPPFPAQSGVFGKPTNINNVETYANVAWIIRNGSKEFSKYGIGKSRGTKVFALA 349

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G +     VE  M +   E+I    GGI    +   AV  GG S  C+P  ++    +DY
Sbjct: 350 GKIAKGGLVEVPMGMPIREVIYDIGGGIPDDKE-FKAVQMGGPSGGCIPK-ELLDTPVDY 407

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   G+ +G+  ++VMD  T +I        F ++ESCG+C  CR GT  M+ +++R+
Sbjct: 408 ESINATGAIMGSGGMVVMDEDTCMIDVARFFLSFVQNESCGKCPFCRIGTKRMLEILDRI 467

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY------ 419
            KG  ++ +IDLL E+   I+  ++C LG  A  P+   IK F+       D+Y      
Sbjct: 468 TKGEGKESDIDLLLELCHQIKDGSLCGLGQTAPNPVLTTIKYFK-------DEYMAHIVD 520

Query: 420 HRC 422
           HRC
Sbjct: 521 HRC 523


>gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
 gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
          Length = 629

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 165/423 (39%), Positives = 251/423 (59%), Gaps = 11/423 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + + +S G ++ ++K L +   + +I+E+  S LRGRGG GF TG KW
Sbjct: 150 VLKNCGHIDAEHIEEYLSIGGYEALEKALFDMKPEEVISEISESNLRGRGGGGFPTGYKW 209

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S +     ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+GA   +IYVR
Sbjct: 210 SQVAGQ-EEKIRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGIMIAAYAVGAQEGYIYVR 268

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184
            E+      L+ A+++    GLLG +  LG D    +H   GAGA++CGE +AL  S+EG
Sbjct: 269 AEYPLAISRLKRAIEQAEEYGLLGDHI-LGTDFSFHLHINKGAGAFVCGEGSALTASIEG 327

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
            +G PR+KPP     GL+G PT +NNVE+ A VP I+  GA W+ G G E + GTK F++
Sbjct: 328 NRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIITEGAQWFKGIGPEKSPGTKAFAL 387

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G VN+   +E  M  T  E+I    GGI+G  +   AV  GG S  CL    +    +D
Sbjct: 388 TGSVNHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPHL-DVNLD 445

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D LK+MG+ +G+  ++VMD ST +++       F ++ESCG+C PCREGT  M+ ++ER
Sbjct: 446 FDSLKKMGAMIGSGGLVVMDDSTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 505

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQY---H 420
           +V+G  +  ++DLL E++  I    +C LG +AA P+   +K FR   +E  +D+    H
Sbjct: 506 IVEGKGKPEDLDLLEELATTITETALCGLGKSAALPVMSTLKLFRDEYVEHVVDKKCASH 565

Query: 421 RCN 423
            CN
Sbjct: 566 NCN 568


>gi|256783976|ref|ZP_05522407.1| respiratory chain oxidoreductase [Streptomyces lividans TK24]
          Length = 419

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 160/386 (41%), Positives = 218/386 (56%), Gaps = 18/386 (4%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G +  + +    G   +I EV  +GL GRGGA F TG KW        D PH
Sbjct: 30  SLDDYRAHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQAT-AAQPDHPH 88

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV NADESEPGT KDR +M  +P+ L+E   IA++A GAH  ++Y+RGE+ R    L  
Sbjct: 89  YLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTH 148

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+++    GLLG +    GY  DI +  GAGAYICGEETAL  S+EG++G+PR KPPFP 
Sbjct: 149 AIEQARTRGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGRRGEPRSKPPFPV 208

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT  NNVE++  V  IL  GA  Y+  G   + G KLF +SG V  P   E  
Sbjct: 209 EKGLFGKPTVENNVETLVNVLPILTMGAEAYAAIGTPTSTGPKLFCVSGTVARPGVYELP 268

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGS 313
              T  EL+     G+R   DNL AV+ GG++      G +R   +D    ++G +E G+
Sbjct: 269 FGATLGELLA--LAGVR---DNLRAVLLGGAA-----GGFVRPDELDIPLTFEGTREAGT 318

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV--KGIAQ 371
            LG+  V+  D +  + + + R++ F++ ESCGQC PCR GT      + R+    G A 
Sbjct: 319 TLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIADRTGAAA 378

Query: 372 KREIDLLYEVSKNIEGRTICALGDAA 397
             +I LL EV + +   +IC LG  A
Sbjct: 379 ADDIALLREVGRAMRDASICGLGQTA 404


>gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
          Length = 595

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 155/405 (38%), Positives = 232/405 (57%), Gaps = 6/405 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + + +  G +  + K+L E   D +I  +  SGLRGRGGAGF TG+KW       +D+  
Sbjct: 129 IEEYIGTGGYQALGKVLTEMTPDEVIQTLLDSGLRGRGGAGFPTGLKWKLAKGNDADQ-K 187

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA   FIYVR E+    + L+ 
Sbjct: 188 YVCCNADEGDPGAFMDRSVLEGDPHAVLEAMAIAGYAIGASQGFIYVRAEYPIAVQRLKI 247

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+++     LLG +    G+  DI +  GAGA++CGEETAL+ S+EGK+G+PR +PPFPA
Sbjct: 248 AIEQAREMELLGKDIFGTGFSFDIDLRLGAGAFVCGEETALMTSIEGKRGEPRPRPPFPA 307

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G P+ +NNVE++A +P I+  G  W++  G E ++GTK+F++ G ++    VE  
Sbjct: 308 QKGLFGKPSILNNVETLANIPQIILNGPEWFNAMGTEKSKGTKVFALGGKIHNTGLVEVP 367

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M  T  E++E+  GG   G     A   GG S  C+PA      I DYD L  +GS +G+
Sbjct: 368 MGTTLREIVEEI-GGGIPGGKKFKAAQTGGPSGGCIPAEHFDIPI-DYDNLISIGSMMGS 425

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             +IV+D    ++        F   ESCG+CTPCR GT  M+ ++ ++ KG A   +ID 
Sbjct: 426 GGLIVLDEDDCMVDIAKFFLEFTVEESCGKCTPCRIGTKRMLEILTKITKGQATMEDIDK 485

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           L E+   ++  ++C LG  A  P+   +  FR   E  I +  RC
Sbjct: 486 LEELCYYVKTNSLCGLGQTAPNPVLSTLHFFRDEYEAHIKE-KRC 529


>gi|297563040|ref|YP_003682014.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296847488|gb|ADH69508.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 656

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 157/384 (40%), Positives = 218/384 (56%), Gaps = 13/384 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G +  + + L  G   +I EV  SGL GRGGA F TG KW    +   D PH
Sbjct: 245 SLDDYRAAGGYAALRRALRLGPAGVIREVSDSGLVGRGGAAFPTGRKWQATAQQ-PDGPH 303

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV NADESEPGT KDR +M  +P +++E   IA +A+GA   ++Y+RGE+ R    L+ 
Sbjct: 304 YLVCNADESEPGTFKDRVLMEGDPFSVVEAMTIAGYAVGARTGYLYIRGEYPRALRHLEN 363

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV      GLLG +    G+  DI +  GAGAYICGEETA+  S+EG++G+PR KPPFP 
Sbjct: 364 AVALARGRGLLGPDILGSGFAFDIEIRRGAGAYICGEETAIFGSIEGQRGEPRSKPPFPV 423

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNVE++  V  +L  G   Y+  G   + G KLF +SG V  P   E  
Sbjct: 424 EKGLFGKPTAVNNVETLVNVLPVLLMGGPAYAAVGTGQSTGPKLFCLSGGVRRPGLYELP 483

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGS 313
              T  +LIE   GG+  G   + AV+ GG++        +RG  +D    ++G +  G+
Sbjct: 484 FGATLRDLIEA-AGGMPEGR-TIQAVLLGGAA-----GTFVRGDELDIPLTFEGARAAGT 536

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LG+  V+V+D + D++  + R++ F++ ESCGQC PCR GT      + R+  G     
Sbjct: 537 SLGSGVVLVLDDTADLVATLVRVAAFFRDESCGQCVPCRVGTVRQEESLLRIRAGGDAAA 596

Query: 374 EIDLLYEVSKNIEGRTICALGDAA 397
           E+ LL EV   +   +IC LG  A
Sbjct: 597 EVPLLREVGLAMRDASICGLGQTA 620


>gi|57235004|ref|YP_180896.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225452|gb|AAW40509.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 417

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 152/387 (39%), Positives = 221/387 (57%), Gaps = 9/387 (2%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           M+ G +  + K L    D +I EVK S L GRGGA F TG+KW    K  ++ P Y+V N
Sbjct: 23  MADGGYQALKKALSMTPDEVIAEVKRSKLVGRGGAAFPTGLKWELTRKEKAN-PKYIVCN 81

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           A E EPGT KDR I++++PH ++EG +IA++A+G    FI+ R  +  E E  Q A+D+ 
Sbjct: 82  ASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQGFIHAREVYTEEIELFQKAIDQA 141

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
              G LG N     + +DI  +  AGAYICGEETAL ESLEG +G P  +PP+P  VGL 
Sbjct: 142 TERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFESLEGHRGIPAARPPYPVQVGLM 201

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
             PTTVNNVE++  VP I+  GA W++  G  +  GTKLF +SG+V  P   E  +    
Sbjct: 202 DKPTTVNNVETLCNVPAIINNGADWFAAIGHPDYPGTKLFCLSGNVKEPGVFEMPLGTNL 261

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            +L+E   GG+ G +    AV+PGG S   L    +    +D+  L + G+ LG+ AVIV
Sbjct: 262 KDLLEAG-GGVDGKFK---AVLPGGISSSLLTEMDVN---LDFKTLAKAGTMLGSGAVIV 314

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           ++  T ++     ++ F+  E CG+C+ CREGT     ++ R  +G   + E++ L E+ 
Sbjct: 315 INSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAEILSRFSRGQGNRNELEWLLELH 374

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++    C LG  A       I+NF+
Sbjct: 375 EVMKDTASCGLGQVALNVAASAIRNFK 401


>gi|300023972|ref|YP_003756583.1| NADH dehydrogenase (quinone) [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525793|gb|ADJ24262.1| NADH dehydrogenase (quinone) [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 521

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 154/391 (39%), Positives = 226/391 (57%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D    G +D + K L      I+ EV  SGLRGRGGAGF TG+KW  +  + +D+  
Sbjct: 116 SIEDYRKHGGYDGLTKALAMKPIDIVTEVTTSGLRGRGGAGFPTGIKWKTVHDIAADQ-K 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+  NADE + GT  DR +M  +P  LIEG  IA+ A GA   +IYVR E+     +L+ 
Sbjct: 175 YVACNADEGDSGTFADRMLMEGDPFCLIEGMTIAAVAGGATKGYIYVRSEYPHSVHNLRQ 234

Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++   A+  LG N +  GY  D+ V  GAGAY+CGEET++LESLEGK+G  R KPP PA
Sbjct: 235 AIEIARAANWLGDNIQGSGYSFDLFVRMGAGAYVCGEETSMLESLEGKRGLVRYKPPIPA 294

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT +NNV S A VP IL +G  +Y  +G   +RGT  F I+G++     VE++
Sbjct: 295 IEGLFGKPTIINNVMSFAAVPIILAKGGEFYKNYGIGRSRGTLAFQITGNIKQGGLVEKA 354

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +T  +LIE   GG   G   + AV  GG     LP  +     MDY+   ++ + +G 
Sbjct: 355 FGVTTRQLIEDWGGGTYSGR-PVRAVQIGGPLGAYLPESKFD-VPMDYEEFAKVDAMVGH 412

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ K       F   ESCG+CTPCR G+   + VM+R++  + ++R I+L
Sbjct: 413 GGLVVFDDTVDMAKMARFAMEFCAIESCGKCTPCRIGSTRGVEVMDRIIADVDRERNIEL 472

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++ + +   ++CALG    +P++  ++ F
Sbjct: 473 LEDLCETMTDGSLCALGGLTPYPVRSALRGF 503


>gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus
           mobilis]
          Length = 609

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 161/411 (39%), Positives = 230/411 (55%), Gaps = 16/411 (3%)

Query: 19  SLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS--- 74
            + D +  G +  ++K + E   D +I EV  SGLRGRGGAGF TG KW    K C+   
Sbjct: 142 QIDDYIDHGGYGALEKTVKEMTPDVVIEEVHRSGLRGRGGAGFPTGRKW----KQCASYE 197

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           + P Y+V N DE +PG   DR IM  +PH++IEG +I ++A+GA+  FIY+R E+    E
Sbjct: 198 NSPKYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMIIGAYAVGANEGFIYIRDEYALAVE 257

Query: 135 SLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
           +++ A+++    G LG N   S   +D+ I+   G GA++CGE TAL+ S+EGK G+PR 
Sbjct: 258 TIRKAIEQARERGYLGRNILGSSFSFDLSIV--RGGGAFVCGESTALMASIEGKVGEPRA 315

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           K       GL+G PT +NNVE+ A +P IL +G   +   G E + GTK+FS+ G V   
Sbjct: 316 KYIRSVEKGLWGQPTVLNNVETWANIPVILTQGGDQFRQIGTEKSTGTKVFSLVGKVKNT 375

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             VE  M I   ELI    GGI GG     AV  GG S  C+P  ++    +D+D L E 
Sbjct: 376 GLVEVPMGIRLRELIFDIGGGILGGR-KFKAVQTGGPSGGCIPE-ELLDLPVDFDSLTEA 433

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS +G+  +IVMD  T ++        F   ESCG+C PCREG   M  ++E + +G  Q
Sbjct: 434 GSMMGSGGMIVMDDRTCMVDVARYYVQFLADESCGKCVPCREGIRRMAEILEDICEGRGQ 493

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + ++DLL  + + +    +C LG +A  P+   I+ FR      I Q  RC
Sbjct: 494 ESDLDLLLNIGETMAEAALCGLGKSAPNPVSTTIRYFREEYLAHI-QERRC 543


>gi|119510367|ref|ZP_01629502.1| hydrogenase subunit [Nodularia spumigena CCY9414]
 gi|119465004|gb|EAW45906.1| hydrogenase subunit [Nodularia spumigena CCY9414]
          Length = 533

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 230/370 (62%), Gaps = 8/370 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ +  SGLRGRGGAG+ TG+KW+ + K   DR  +++ NADE +PG   DR ++  +P
Sbjct: 162 VVDAITRSGLRGRGGAGYPTGLKWATVAKAEGDR-KFVICNADEGDPGAFMDRSVLESDP 220

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDV 159
           H ++EG  IA++A+GA+  +IY+R E+      LQ A+ +  + G+LGS   +S+  + +
Sbjct: 221 HRVLEGMAIAAYAVGANQGYIYIRAEYPIAINRLQTAIRQAQSFGILGSQIFDSRFDFKI 280

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI +  GAGAY+CGEETAL+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A V  
Sbjct: 281 DIRI--GAGAYVCGEETALMASIEGKRGTPHPRPPYPAESGLWGYPTLINNVETYANVAP 338

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+R GA W++  G E ++GTK+F+++G++     +E  M  +  +++E   GG       
Sbjct: 339 IIRNGAEWFASIGTEKSKGTKVFALAGNITNTGLIEVPMGTSLQQIVEVM-GGGVPNGGV 397

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           + AV  GG S  C+PA      + DY+ L E+GS +G+  +IVMD ST+++        F
Sbjct: 398 VKAVQTGGPSGGCIPASAFDSPV-DYESLTELGSIMGSGGMIVMDESTNMVDVARYFMEF 456

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+C PCR GT  + +++ R+  G A   +++LL E+   ++  ++C LG +A  
Sbjct: 457 CMDESCGKCIPCRVGTVQLYKLLTRISAGEASLADLELLEELCDMVKHTSLCGLGQSAPN 516

Query: 400 PIQGLIKNFR 409
           P+   ++ FR
Sbjct: 517 PVFSTLRYFR 526


>gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 623

 Score =  272 bits (696), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 155/402 (38%), Positives = 237/402 (58%), Gaps = 5/402 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + D M RG + ++ K+L    R+ +I  +KASGLRGRGG GF TG+KW F  K   D+
Sbjct: 156 EKIEDYMGRGGYKSLLKVLSSMKREEVIETIKASGLRGRGGGGFPTGLKWEFAYKAKGDK 215

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             ++V NADE +PG   +R ++  +PH+++EG +IA++ +GA   + Y+R E+    E  
Sbjct: 216 -KFVVCNADEGDPGAFMNRTLLERDPHSILEGMIIAAYTVGAQKGYAYIRAEYPIAVEMF 274

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             A+++  A GLLG N    G+  D+ V  GAGA++CGEETALL S+EGK+G PR +PPF
Sbjct: 275 NKAINDAKALGLLGENILGTGFSFDLEVKEGAGAFVCGEETALLASIEGKRGVPRPRPPF 334

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE+ A VP I+R G   Y   G E + GTK+FS++G +     +E
Sbjct: 335 PAQKGLWGYPTLINNVETYANVPKIIRDGVKKYRENGVEKSPGTKMFSVTGPLKLTGIIE 394

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T   ++E  CGG   G   + A+  GG S  CLP  +     +DYD LK + + +
Sbjct: 395 IPFGTTIRYVLENICGGTTDG-KKIKAIQIGGPSGACLPE-KYFDLPLDYDTLKSIDAMV 452

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  ++ +   + +++       F K ESCG+C PCREGT     ++E+  +G A + ++
Sbjct: 453 GSGGIVAITEDSCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTQGKATEEDL 512

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + L  ++K I+  ++C LG  A  PI   +K+FR    E I+
Sbjct: 513 ENLEYLAKIIKTASLCGLGKTAPNPILSTLKHFREEYIEHIN 554


>gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
           27021]
          Length = 624

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 153/397 (38%), Positives = 231/397 (58%), Gaps = 5/397 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +   S+ + ++   +   +K+L +   D +I E++ S LRGRGG GF  G KWS + +  
Sbjct: 153 IDATSIEEYLAIDGYSAFEKVLFDMKADEVIKEIEESNLRGRGGGGFPAGRKWSQVSRQ- 211

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            +   Y+V N DE +PG   DR IM  +PH ++EG +IA  A GA   +IYVR E+    
Sbjct: 212 KEEIRYIVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAGVACGAQKGYIYVRAEYPLAV 271

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             L  A+++    G+LG N    G+  D+ ++ GAGA++CGE +AL  S+EGK+G PR+K
Sbjct: 272 SRLSNAIEQARKYGILGENILGTGFSFDLQINRGAGAFVCGEGSALTASIEGKRGMPRVK 331

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PP     GL+G PT +NNVE+ A VP ++ +GA WY   G EN+ GTK F+++G++    
Sbjct: 332 PPRTVEQGLFGKPTVLNNVETFANVPIVINKGAEWYRSIGPENSPGTKAFALTGNIENTG 391

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            +E  M  T  E+I    GGIR G     AV  GG S  CL A  +    +D+D LK+ G
Sbjct: 392 LIEVPMGTTLREVIFDIGGGIRDG-KRFKAVQIGGPSGGCLTAEHL-DLPLDFDSLKKAG 449

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           + +G+  ++VMD  T +++       F K+ESCG+C PCREGT  M+ ++E +V G  + 
Sbjct: 450 AMIGSGGLVVMDEDTCMVEVARFFMNFTKNESCGKCVPCREGTKRMLVILEGIVAGKGKL 509

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            ++D+L E++  I    +C LG  A  P+   IKNF+
Sbjct: 510 EDMDMLLELADTISATALCGLGKTAPSPVVSTIKNFK 546


>gi|147678983|ref|YP_001213198.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146275080|dbj|BAF60829.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 617

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 160/400 (40%), Positives = 236/400 (59%), Gaps = 4/400 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +S+ D ++ G ++ ++K L+  R  II+EVK SGLRGRGG GF TG KW F+     D+ 
Sbjct: 150 ESIEDYIATGGYEGIEKALKMDRQAIIDEVKKSGLRGRGGGGFPTGNKWQFVYNAPGDK- 208

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y V NADE +PG   DR ++  +PH ++EG +IA +AIGA   +IY R E+      L 
Sbjct: 209 KYAVCNADEGDPGAFMDRSVLEGDPHAVLEGMMIAGYAIGADEGYIYCRAEYPLAIRRLN 268

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ +    GLLG N    G+   I +  GAGA++CGEETALL S+EGK+G PR++PPFP
Sbjct: 269 LAIAQAEQLGLLGDNILDSGFSFRIKIKAGAGAFVCGEETALLNSIEGKRGMPRVRPPFP 328

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GL+  PT +NNVE+ A VP I+R+G  WY+  G E ++G+K+F ++G VN    +E 
Sbjct: 329 AHKGLWEKPTVLNNVETYANVPFIIRKGGDWYAAMGTEKSKGSKVFCLTGKVNNTGLLEV 388

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M IT  + +    GG   G     AV  GG S  CLP  ++   + DY+ L   G+ +G
Sbjct: 389 PMGITLRD-VIFSIGGGIQGGKKFKAVQSGGPSGGCLPEEKLDLPV-DYESLTAAGAIMG 446

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++VMD +T ++        F + ESCG+CTPCREGT  M+ ++ ++  G  +  +ID
Sbjct: 447 SGGLVVMDETTCMVDVARFFLNFTQAESCGKCTPCREGTKRMLELLGKICDGRGELEDID 506

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            L  +++ I+   +C LG     PI   ++ FR   E  I
Sbjct: 507 TLERLARVIKNSALCGLGQTCPNPILTTLRYFRHEYEAHI 546


>gi|330860331|emb|CBX70644.1| NADH-quinone oxidoreductase subunit F [Yersinia enterocolitica
           W22703]
          Length = 367

 Score =  272 bits (695), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 147/342 (42%), Positives = 205/342 (59%), Gaps = 6/342 (1%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I     L+ 
Sbjct: 5   YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRR 64

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 65  AIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 124

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
           + G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P   E
Sbjct: 125 SSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNPGLWE 184

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + GS L
Sbjct: 185 LPFGITAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTADHLD-LPMDFENIAKAGSRL 242

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  +I
Sbjct: 243 GTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDI 302

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 303 ETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 344


>gi|308271888|emb|CBX28496.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
           Desulfobacterium sp.]
          Length = 541

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 160/422 (37%), Positives = 241/422 (57%), Gaps = 9/422 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTG 63
           Q  +  N   +  +++ D ++ G ++ + K+L    R+ +I+EVK SGLRG GGAGF  G
Sbjct: 115 QRTLLKNCGHIDPENIDDYIAAGGYEALKKVLSGMTREQVIDEVKRSGLRGLGGAGFPAG 174

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KW    K   D   Y++ NADE +PG  +DR ++   PH+L+EG VIA +AIGA   +I
Sbjct: 175 RKWEACYKAEGDV-KYVICNADEGDPGAFQDRSVIEGTPHSLLEGMVIAGYAIGAKVGYI 233

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLES 181
           YVR E+    + L+ A+ +   +  LG    LG D   +I V  GAGA++CGE TAL+ S
Sbjct: 234 YVRAEYPLAVKRLRTAISKAKKNKYLGKKI-LGTDFTFNIEVFQGAGAFVCGESTALVLS 292

Query: 182 LEGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           +EGK+G P+  P P    VGL+  PT +NNV+++A +P I+  GA W++G G E ++GT 
Sbjct: 293 IEGKRGMPKASPRPRTTEVGLWDKPTLLNNVKTLAYIPQIIANGADWFAGIGTEKSKGTV 352

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           + +++G V     +E  M IT  E+I    GGI  G     AV  GG S  CLP   +  
Sbjct: 353 ILALTGKVVNNGLIEVPMGITLREIIFGIGGGIPDG-KKFKAVQTGGPSGGCLPE-HLLD 410

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L + GS +G+  ++VMD  T ++        F + ESCGQC PCR GT  M  
Sbjct: 411 LPVDFDSLNDAGSIMGSGGIVVMDEETCMVDVARYFLDFTQRESCGQCIPCRLGTKQMFD 470

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++ + KG  Q  +ID+L E+ + +   ++CALG  A  P+   ++ FR   E  I++  
Sbjct: 471 ILDDITKGKGQPEDIDMLLEIGEAVAKTSLCALGKTAPNPVLTTLRFFRHEYEAHINE-K 529

Query: 421 RC 422
           RC
Sbjct: 530 RC 531


>gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH
           [Geobacter metallireducens GS-15]
          Length = 635

 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 155/416 (37%), Positives = 239/416 (57%), Gaps = 6/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q  I +    L  KS+ D ++ G +  + K+L +   + ++ E+K S LRGRGG GF   
Sbjct: 136 QRNILSENLRLDSKSMDDYLAIGGYSALSKVLFQMTPEDVMGEIKKSNLRGRGGGGFPAW 195

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KW    +   D   Y++VNADE +PG   DR ++   PH+++EG +I ++A+GAH  FI
Sbjct: 196 RKWE-ESRNAPDPIKYVIVNADEGDPGAFMDRALIEGNPHSILEGLIIGAYAVGAHEGFI 254

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    E++  A+ +    G +G +    G+D  + VH GAGA++CGE +AL+ +L
Sbjct: 255 YVRQEYPLAVENINLAIRQASERGFVGKDILGSGFDFTVKVHMGAGAFVCGESSALMTAL 314

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG+ G+PR K    A  G++  P+ +NNVE+ A V  I+ +GA W++ +G   + GTK+F
Sbjct: 315 EGRAGEPRPKYIHTAVKGVWDHPSVLNNVETWANVTQIITKGADWFTSYGTAGSTGTKIF 374

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+ G +     VE  M +T  ++I K  GGI GG     AV  GG S  C+P   M    
Sbjct: 375 SLVGKITNTGLVEVPMGVTLRDIITKVGGGIPGG-KKFKAVQTGGPSGGCIPEA-MLDLP 432

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+D L + GS +G+  +IVMD  T ++        F K ESCG+CTPCREG   M+ V+
Sbjct: 433 VDFDELTKAGSMMGSGGMIVMDEDTCMVDIARYFIDFLKDESCGKCTPCREGIRQMLAVL 492

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R+  G  ++ +I+LL E++++  G  +CALG +A  P+   I+ FR   E  I +
Sbjct: 493 TRITVGKGKEGDIELLEELAEST-GAALCALGKSAPNPVLSTIRYFRDEYEAHIRE 547


>gi|307331426|ref|ZP_07610544.1| NADH dehydrogenase (quinone) [Streptomyces violaceusniger Tu 4113]
 gi|306882925|gb|EFN13993.1| NADH dehydrogenase (quinone) [Streptomyces violaceusniger Tu 4113]
          Length = 366

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 156/362 (43%), Positives = 214/362 (59%), Gaps = 18/362 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I EV  +GL GRGGA F TG KW+   +   D PHYLV NADESEPGT KDR +M  +P
Sbjct: 1   MIREVTEAGLVGRGGAAFPTGRKWAATAQQ-PDHPHYLVCNADESEPGTFKDRVLMEGDP 59

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDI 161
           + LIE   IA +A GAH  ++Y+RGE+ R    L+ A+D   A G LG +    G+  +I
Sbjct: 60  YALIEAMTIAGYATGAHRGYLYLRGEYPRALRRLRTAIDRARARGFLGEDVMGQGFAFEI 119

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGAYICGEETA+  S+EG++G+PR KPPFP   GL+G PT VNNVE++  V  IL
Sbjct: 120 EIRRGAGAYICGEETAIFNSIEGRRGEPRSKPPFPVEKGLFGKPTAVNNVETLVNVLPIL 179

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA  Y+  G   + GTKLF +SG V  P   E     T  EL+E     + G  + L 
Sbjct: 180 IEGAQAYARTGTGTSTGTKLFCVSGTVARPGVYELPFGATLGELLE-----LAGPPETLR 234

Query: 282 AVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
           AV+ GG++      G +R   +D    ++G +  G+ LG+  V+V+D S D+ + + R++
Sbjct: 235 AVLLGGAA-----GGFVRPDELDVPLTFEGTRAAGTTLGSGVVLVLDDSVDLPRVLLRIA 289

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERL--VKGIAQKREIDLLYEVSKNIEGRTICALGD 395
            F++ ESCGQC PCR GT      + R+  + G A   +I LL EV + +   +IC LG 
Sbjct: 290 EFFRDESCGQCVPCRVGTVRQEEALHRIKDLTGAAAAGDIALLREVGQAMRDASICGLGQ 349

Query: 396 AA 397
            A
Sbjct: 350 TA 351


>gi|162148250|ref|YP_001602711.1| NADH-quinone oxidoreductase subunit F [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209542890|ref|YP_002275119.1| NADH dehydrogenase (quinone) [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786827|emb|CAP56410.1| putative NADH-quinone oxidoreductase chain F [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530567|gb|ACI50504.1| NADH dehydrogenase (quinone) [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 428

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 172/401 (42%), Positives = 235/401 (58%), Gaps = 8/401 (1%)

Query: 27  GHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNA 84
           G W  + + L +   + +I EV  S LRGRGGAGF TG KWSF+P+    D+  YLV NA
Sbjct: 25  GGWQGLRRALRDLTPEAVIAEVTDSRLRGRGGAGFGTGQKWSFVPRTPAGDQRKYLVANA 84

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DE EPGT KDR ++   P  LIEG ++A +AI A    I++RGE+    + L  A+DE  
Sbjct: 85  DEMEPGTFKDRILLEGNPLQLIEGMIVAGYAIQAGEGVIFLRGEYHLALDRLTRAIDEAR 144

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
           A G LG + +  G+D DI VH   G YICGEETALL +LEG +  PR KPPFP   GL+G
Sbjct: 145 AVGWLGRDIAGSGFDFDIHVHASGGRYICGEETALLTALEGSRAVPRSKPPFPQVGGLWG 204

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            P+ VNNVE++  VP IL  GA+W+       + GTKLF +SG V  P   E  M     
Sbjct: 205 APSVVNNVETLCNVPHILANGAAWFRALAIGPDGGTKLFGVSGRVKRPGAWELPMGTPLR 264

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+IE+H GG+R G+  L A++PGG+S   L  G +  A MDY  +++ GS LGT   I++
Sbjct: 265 EIIEEHAGGMRDGY-GLRALLPGGASTAFLDGGAIDIA-MDYATVEKAGSRLGTGLAILL 322

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
           D  T  +  +  L  F+  ESCG CTPCR+G  W+ R+++ + +G  +  ++DLL   ++
Sbjct: 323 DDRTCPVGMLRNLEHFFAQESCGWCTPCRDGLPWVERLLDAIEEGRGEDGDLDLLAHHAR 382

Query: 384 NI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            I   GRT CA    A  P+   +  FR   E  + +  RC
Sbjct: 383 MIGPMGRTFCAHAPGAIAPLSSGLNLFRAEFEAHL-RLGRC 422


>gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
          Length = 626

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 157/410 (38%), Positives = 235/410 (57%), Gaps = 9/410 (2%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           N+  +Q +SL++ +    +  + K I +  +  II+E+K SGLRGRGGAGF TG KW   
Sbjct: 152 NVEKIQLESLNEYIGADGYQALHKAIFDLDQKDIIDEMKKSGLRGRGGAGFPTGRKWESA 211

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            KV  +   Y++ NADE +PG   DR I+  +PH+++EG  I   AIGA+  FIYVR E+
Sbjct: 212 YKV-ENSQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGANQGFIYVRAEY 270

Query: 130 IRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
               + L+ A+ +   + LLG N   S   +D+++    G+GA++CGE TAL+ES+EG++
Sbjct: 271 PIAVKRLRIAIQQAKETNLLGDNIFGSDFSFDIEL--RLGSGAFVCGEGTALMESIEGRR 328

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PR K    A  GL+  PT +NNVE+ A VP I+ RGA W++ FG E + GTK+F++ G
Sbjct: 329 GMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYRGADWFTSFGTEGSPGTKVFALGG 388

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V     VE  M  T  E+I    GGI+ G     AV  GG S  C+P  +     +D++
Sbjct: 389 KVVNTGLVEVPMGSTLREIIFDIGGGIKDG-KKFKAVQTGGPSGGCIPE-EFLDTPVDFE 446

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L ++GS +G+  +IVMD    ++        F   ESCG+C PCREGT  M+ ++E++ 
Sbjct: 447 SLAKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKRMLEILEKIT 506

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            G  +  +I+ L ++   I   ++C LG  A  P+   +K FR   E  I
Sbjct: 507 SGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHI 556


>gi|296132535|ref|YP_003639782.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296031113|gb|ADG81881.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 634

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/422 (35%), Positives = 237/422 (56%), Gaps = 9/422 (2%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           +Q  +  +   +  + ++  ++R  +  + K L      ++ E+K + LRGRGGAGF TG
Sbjct: 137 EQKIVLADCGLINPEDINQYLARDGYSALAKALSMKPAEVVAEIKDAKLRGRGGAGFPTG 196

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW    +  S    Y++ NADE +PG   DR ++   PH +IEG +IA FA+GA   + 
Sbjct: 197 VKWEICHQAVSPE-KYVICNADEGDPGAFMDRALLESNPHQVIEGLMIAGFAVGASKGYF 255

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180
           YVR E+      L+ A+++    G+LGS+   S  G+D++I    G+GA++CGEETAL+ 
Sbjct: 256 YVRAEYPLAITRLRTALEQAREKGILGSSVLGSDFGFDIEIF--QGSGAFVCGEETALIA 313

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G P  +PPFPA  GL G PT +NNV++++ VP I+R+G  W+   G  ++ GT 
Sbjct: 314 SMEGKPGIPNHRPPFPAVSGLRGKPTVINNVKTLSYVPHIIRKGVDWFKSVGTPDSPGTA 373

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G V      E  M  T   LI     GI+       AV  GG S  CLP   +  
Sbjct: 374 VFALAGKVVSTGLAEVPMGTTLRTLIYDVGNGIKDD-KPFKAVQIGGPSGGCLPESSLDL 432

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            I D+D L++ G+ +G+  ++V+     +++       F + ESCG+CT CR GT  M+ 
Sbjct: 433 PI-DFDSLQQAGAMMGSGGLVVLSEDDCMVEIARYFLEFTQKESCGKCTFCRLGTKQMLE 491

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++  + KG  +  +IDLL E+ ++I+  ++C+LG  A  P+   I+ FR   E  I Q  
Sbjct: 492 ILTDITKGQGKPEDIDLLLELGEDIKAGSLCSLGKTAPNPVLTTIRFFRHEYEAHI-QEK 550

Query: 421 RC 422
           RC
Sbjct: 551 RC 552


>gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
 gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
          Length = 629

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/423 (38%), Positives = 251/423 (59%), Gaps = 11/423 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + + +S G ++ ++K L +   + +I+E+  S LRGRGG GF TG KW
Sbjct: 150 VLKNCGHIDAEHIEEYLSIGGYEALEKALFDMKPEEVISEISESNLRGRGGGGFPTGYKW 209

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S +     ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+GA   +IYVR
Sbjct: 210 SQVAGQ-EEKIRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGIMIAAYAVGAQEGYIYVR 268

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184
            E+      L+ A+++    GLLG +  LG D    +H   GAGA++CGE +AL  S+EG
Sbjct: 269 AEYPLAISRLKRAIEQAEEYGLLGDHI-LGTDFSFHLHINKGAGAFVCGEGSALTASIEG 327

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
            +G PR+KPP     GL+G PT +NNVE+ A VP I+  GA W+ G G E + GTK F++
Sbjct: 328 NRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIITEGAQWFKGIGPEKSPGTKAFAL 387

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G VN+   +E  M  T  E+I    GGI+G  +   AV  GG S  CL    +    +D
Sbjct: 388 TGSVNHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPHL-DVNLD 445

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D LK+MG+ +G+  ++VMD ST +++       F ++ESCG+C PCREGT  M+ ++ER
Sbjct: 446 FDSLKKMGAMIGSGGLVVMDDSTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 505

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQY---H 420
           +V+G  +  ++DLL E++  I    +C LG +AA P+   +K FR   +E  +D+    H
Sbjct: 506 IVEGKGKPEDLDLLEELATTITETALCGLGKSAALPVMSTLKLFRDEYVEHVVDKKCASH 565

Query: 421 RCN 423
            C+
Sbjct: 566 NCS 568


>gi|303245642|ref|ZP_07331925.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492905|gb|EFL52770.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 491

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 234/416 (56%), Gaps = 5/416 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q RI T   G +  +S+ D ++   ++ + K+L      +++ VK SGLRGRGGAGF TG
Sbjct: 10  QLRIATRNCGFIDPESIDDYIALRGYEGLAKVLTMTPAEVVDLVKRSGLRGRGGAGFPTG 69

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW       +D+  Y+V NADE +PG   DR ++  +PH+++E   I  +AIGA    +
Sbjct: 70  IKWGIALGNKADQ-KYMVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATRGTV 128

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    + L+ A+D+    GLLG N    G+D DI + +GAGA++CGEETAL+ S+
Sbjct: 129 YIRAEYPLAIKRLKKAIDDAREYGLLGENIFGSGFDFDIELKYGAGAFVCGEETALIRSM 188

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G+P  KPPFPA  G +  PT VNNVE+ A +P I+  GA W+SG G   ++GTK+F
Sbjct: 189 EGKRGEPVTKPPFPAQSGYWEKPTIVNNVETFANIPAIIINGADWFSGIGTATSKGTKVF 248

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G +     +E  M I+  E+I    GG   G     AV  GG S   L    +  AI
Sbjct: 249 ALAGKIQNVGLIEVPMGISLREVIFDIGGGCPDG-KAFKAVQTGGPSGGALANKDLDVAI 307

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            DY+ L    S +G+  ++VMD    ++        F   E+CG+CTPCR G+  +  ++
Sbjct: 308 -DYESLAACKSIMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYEIL 366

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +R+ KG   + ++D L  +S+ I+   +C LG     PI   +  F    E  +D 
Sbjct: 367 DRITKGKGTRADLDRLKSLSEIIKDTALCGLGQTMPNPILSTMDTFANEYEAHVDD 422


>gi|164430982|gb|ABY55763.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Drosophila
           silvestris]
          Length = 193

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/185 (69%), Positives = 148/185 (80%), Gaps = 1/185 (0%)

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           N GTKLF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P 
Sbjct: 1   NSGTKLFNISGHVNTPCTVEEEMSIPLKELIERHCGGVVGGWDNLLGVIPGGSSTPIIPK 60

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
                 IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG 
Sbjct: 61  KVCDDVIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGI 120

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           GWM ++MER VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R
Sbjct: 121 GWMNKIMERFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKR 180

Query: 416 IDQYH 420
           + Q H
Sbjct: 181 M-QLH 184


>gi|190345481|gb|EDK37373.2| hypothetical protein PGUG_01472 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 243

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 122/177 (68%), Positives = 148/177 (83%)

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
            SGHVN PCTVEE MSI   EL+EKHCGG++GGWDNLL VIPGGSSVP +P       +M
Sbjct: 35  FSGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGSSVPVMPKHVCDNVLM 94

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD LK++GSGLGTAAVIVM++ TD+I+AI R + FYKHESCGQCTPCREGT W+ R+M+
Sbjct: 95  DYDALKDVGSGLGTAAVIVMNKQTDMIRAIQRFAHFYKHESCGQCTPCREGTTWLQRMMD 154

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R VKG A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRPL+ ER+ QYH
Sbjct: 155 RFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPLMVERMQQYH 211


>gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 592

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/411 (38%), Positives = 243/411 (59%), Gaps = 5/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + D ++ G ++ + K+L       +++E+K SGLRGRGG GF TG+KW
Sbjct: 114 VLHNCGHINPERIEDYVANGGYEALRKVLTSMSPQEVVDEIKKSGLRGRGGGGFPTGLKW 173

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F      D+  Y+V NADE +PG   DR ++  +PH ++EG  I  +A+GA   +IYVR
Sbjct: 174 QFTRDAKGDK-KYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAICGYAVGADEGYIYVR 232

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + LQ A+ +    G LG N    G++  I +  GAGA++CGEETALL S+EG 
Sbjct: 233 AEYPLAIKRLQIAIKQAEEKGYLGENIFGSGFNFRIKIKAGAGAFVCGEETALLTSIEGN 292

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PPFPA  GL+G PT +NNVE+ A VP I++ GA WY+  G E ++GTK+F+++
Sbjct: 293 RGMPRPRPPFPAVKGLWGKPTNINNVETFANVPLIIKNGADWYASMGTEGSKGTKIFALT 352

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    VE  M IT  ++I    GG   G     AV  GG S  CLP  ++    +DY
Sbjct: 353 GKVNNTGLVEVPMGITMRQIIFDI-GGGIKGGRKFKAVQIGGPSGGCLPE-ELLDLPVDY 410

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L + G+ +G+  ++VMD +T ++        F + ESCG+C PCREGT  M+ ++E++
Sbjct: 411 DSLIKAGAMMGSGGLVVMDETTCMVDVAKFFLRFTQKESCGKCVPCREGTKRMLEILEKI 470

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +G  +  +++ L +++ NI+  ++C LG  A  P+   ++ FR   E  I
Sbjct: 471 TEGKGEPGDLETLEKLAYNIKNSSLCGLGQTAPNPVLSTLRYFRHEYEAHI 521


>gi|160902190|ref|YP_001567771.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
 gi|160359834|gb|ABX31448.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
          Length = 485

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/419 (37%), Positives = 237/419 (56%), Gaps = 9/419 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + +Q RI   N   +  +++ D +    +  + K L   R+ +I  V  S LRGRGG GF
Sbjct: 1   MPEQVRIVLRNAGNIDPENIEDYLKNNGYLALAKALNSKREEVIQTVLDSNLRGRGGGGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  +   D   Y++ NADE +PG   DR ++  +PH+++EG  IA +AIGA  
Sbjct: 61  PTGLKWKFAMQAKGDE-KYVICNADEGDPGAFMDRSVLEGDPHSVLEGMAIAGYAIGAQK 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177
             IY+R E+      L+ A+ +    GLLG N   S   +D++I    GAGA++CGEETA
Sbjct: 120 GIIYIRAEYPLAVARLKVAISQAKDYGLLGENILGSNFSFDIEI--RLGAGAFVCGEETA 177

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+P  KPPFPAN GL+  PT +NNVE++A +  I+  GA W+  FG EN+ 
Sbjct: 178 LIHSIEGLRGEPTNKPPFPANSGLWKKPTVINNVETLANIAPIILNGADWFKQFGTENSP 237

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     VE  M  T  E+I    GGI+G      AV  GG S  C+PA  
Sbjct: 238 GTKVFALAGDVKKVGLVEVPMGTTLREIIFDIGGGIKGD-KKFKAVQTGGPSGGCIPAEY 296

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I DYD L+ +GS +G+  +IVMD  T ++        F   ESCG+CT CR G   
Sbjct: 297 LDTPI-DYDSLQALGSMMGSGGMIVMDEDTCMVDVAKFYLQFTVDESCGKCTTCRVGNVR 355

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ ++E++  G AQ  ++D +  ++  ++  ++C LG  A  PI    + F    +E I
Sbjct: 356 LLEILEKITSGNAQLEDLDHMLTLANVVKNGSLCGLGQTAPNPILSTYRYFEDEYKEHI 414


>gi|170076827|ref|YP_001733465.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
 gi|22652021|gb|AAN03565.1|AF381045_2 hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
 gi|169884496|gb|ACA98209.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
          Length = 534

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/390 (38%), Positives = 245/390 (62%), Gaps = 9/390 (2%)

Query: 24  MSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
           ++RG + ++ ++LE      ++ E+  SGLRGRGG G+ TG+KW+ + K+  D+  Y+V 
Sbjct: 138 IARGGYRSLHQVLEDLTPMAVVEEITQSGLRGRGGGGYPTGLKWATVAKMPGDQ-KYVVC 196

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           NADE +PG   DR ++  +PH ++EG  IA +A+GA+  +IY+R E+    + L+ A+ +
Sbjct: 197 NADEGDPGAFMDRAVLESDPHRVLEGMAIAGYAVGANHGYIYIRAEYPLAIQRLEKAIKQ 256

Query: 143 CYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
             + GLLGS   NS   + +DI +  GAGA++CGEETAL+ S+EG +G PR +PP+PA  
Sbjct: 257 AKSKGLLGSQIFNSPFNFTIDIRI--GAGAFVCGEETALIASIEGGRGTPRPRPPYPAQS 314

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GL+G PT +NNVE+ A +  I+R GA W+S  G E ++GTK+F+++G V     +E  M 
Sbjct: 315 GLWGHPTLINNVETYANIVPIIREGADWFSSIGTEKSKGTKVFALTGKVKNNGLIEVPMG 374

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
               +++E+  GGI      + +V  GG S  C+PA  +   I +YD L ++G+ +G+  
Sbjct: 375 TPVRQIVEQMGGGIPDSG-TVKSVQTGGPSGGCIPADYLDTPI-EYDSLIKLGTMMGSGG 432

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +IVMD +T+++        F + ESCG+C PCR GT  M  ++ +++KG A+ ++I+LL 
Sbjct: 433 MIVMDEATNMVDVAKFYMEFCQCESCGKCIPCRAGTVQMSGLLSKMLKGQAEPKDIELLE 492

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++   ++  ++C LG +A  PI   ++ FR
Sbjct: 493 QLCHMVKEASLCGLGQSAPNPILSTLRYFR 522


>gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 623

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/421 (37%), Positives = 242/421 (57%), Gaps = 9/421 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +S S+ +++G +  + K+L E     +   +  S LRGRGG G+ +G KW
Sbjct: 145 VLKNCGSINAESFSEYVAKGGYKALGKVLFEMQPQEVCQSILDSNLRGRGGGGYPSGAKW 204

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             + K  S+   Y+V N DE +PG   DR IM  +PH +IEG  IA +A  +   +IYVR
Sbjct: 205 KQVLKQDSE-VKYVVCNGDEGDPGAFMDRSIMEGDPHGVIEGMTIAGYATKSTIGYIYVR 263

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    E L+ A+++    G+LG N    G+  DI ++ GAGA++CGE +AL  S+EG+
Sbjct: 264 AEYPLAVERLKIAIEDARKHGMLGENILSSGFSFDININMGAGAFVCGEGSALTASIEGE 323

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR+KPP     GL+  PT +NNVE+ A VP I+  G+ WY   G EN+ GTK F+I+
Sbjct: 324 RGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPLIINNGSEWYKSIGPENSPGTKAFAIT 383

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G+VN+   +E  M  T  E+I    GGI+ G     AV  GG S  CL    +    +D+
Sbjct: 384 GNVNHTGLIEVPMGTTLREVIFDIGGGIKNG-KKFKAVQIGGPSGGCLTEEHL-DLPLDF 441

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D LK +G+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  M+ ++E++
Sbjct: 442 DSLKRVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILEKI 501

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERID---QYHR 421
           V G   K ++DLL E++  I    +C LG +AA P+   +K FR   +E  +D   + H 
Sbjct: 502 VNGKGSKEDLDLLEELADTISSTALCGLGKSAASPVVSTLKYFRDEYLEHVVDKKCKTHT 561

Query: 422 C 422
           C
Sbjct: 562 C 562


>gi|291280352|ref|YP_003497187.1| NADH-quinone oxidoreductase subunit F [Deferribacter desulfuricans
           SSM1]
 gi|290755054|dbj|BAI81431.1| NADH-quinone oxidoreductase, F subunit [Deferribacter desulfuricans
           SSM1]
          Length = 596

 Score =  270 bits (691), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 162/402 (40%), Positives = 237/402 (58%), Gaps = 7/402 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + D ++ G ++ + K+L E   + +I EVK SGLRGRGG GF TG+KW+F      D 
Sbjct: 130 EDIDDYIAHGGYEAIKKVLKEMTPEEVIEEVKKSGLRGRGGGGFPTGLKWTFCRASKGDL 189

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YL+ NADE +PG   DR I+   PH +IEG +IA++AIG    +IY R E+    + +
Sbjct: 190 -KYLICNADEGDPGAFMDRSIIEGNPHVVIEGMLIAAYAIGCKEGYIYCRAEYPLAIKRV 248

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPP 194
           + A+      G LG N  LG D +  +H   GAGA++CGEETAL+ S+EG++G PR +PP
Sbjct: 249 KKALKIAEERGFLGKNI-LGTDFEFHLHLKEGAGAFVCGEETALIASIEGERGMPRPRPP 307

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GL+G P+ VNNVE+ A +P I+  GA WY+  G E ++GTK+F++SG V     +
Sbjct: 308 FPAVKGLWGKPSNVNNVETFANLPLIINNGADWYASIGTEKSKGTKIFALSGKVKSTGLI 367

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M +T  +L+    GGI      + AV  GG S  CLP   +   I DYD L   G+ 
Sbjct: 368 EVPMGVTVRQLVFDVGGGIPKK-RKIKAVQLGGPSGGCLPESLLDTPI-DYDSLIAAGAM 425

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  V+VMD +  ++        F + ESCG+C PCR GT  M+ ++ER+  G  ++ +
Sbjct: 426 MGSGGVVVMDETNCMVNVAKFFLTFTQRESCGKCIPCRIGTKTMLDILERICAGEGREGD 485

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           I+LL  ++ +I+  ++C LG  A  P+   IK FR   E  I
Sbjct: 486 IELLESLAMDIKTASLCGLGQTAPNPVLTTIKYFRHEYEAHI 527


>gi|77920299|ref|YP_358114.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77546382|gb|ABA89944.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 488

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 219/369 (59%), Gaps = 6/369 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+E+  SGLRGRGGAGF TG+KW F  K  SD   Y+V NADE +PG   DR ++  +P
Sbjct: 46  VIDEMTRSGLRGRGGAGFPTGVKWGFAAKYESDT-KYIVCNADEGDPGAFMDRAVLEGDP 104

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--D 160
           H+++EG ++A +A+GA+   IY+R E+    + L+ A+ +  A GLLG +  LG D   D
Sbjct: 105 HSVLEGMLVAGYAVGANHGVIYIRAEYPLAIKRLRTAIKQASAYGLLGEHI-LGSDFSFD 163

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I + +GAGA++CGEETAL+ S++G +G+P  KPPFPA  G +G PT VNNVE++A VP I
Sbjct: 164 IELKYGAGAFVCGEETALIRSIQGNRGEPYTKPPFPAESGYWGKPTIVNNVETLANVPAI 223

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + +GA W+S  G    +GTK+FS+ G +     +E  M IT  E++    GG  GG    
Sbjct: 224 MMKGADWFSSIGSPTAKGTKVFSLVGKITNVGLIEVPMGITLREVVFDIGGGCPGG-KKF 282

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AV  GG S   L    +   I DY+ L    S +G+  +IVMD    ++        F 
Sbjct: 283 KAVQTGGPSGGVLTYKDLDAPI-DYENLAARESIMGSGGMIVMDEDACMVAIAKFFLQFT 341

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCG+CTPCR G+  +  +++++  G A + +++ L  +++ I+   +C LG     P
Sbjct: 342 MDESCGKCTPCRVGSKRLWELLDKITLGQATEDDLETLVTLARTIKDTALCGLGQTMPNP 401

Query: 401 IQGLIKNFR 409
           I   ++ FR
Sbjct: 402 ILSTVRVFR 410


>gi|37787352|gb|AAP50520.1| Hox1F [Thiocapsa roseopersicina]
          Length = 536

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 153/379 (40%), Positives = 238/379 (62%), Gaps = 8/379 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++ EV  SGLRGRGG G+ TG+KWS + K+ + +  Y++ NADE +PG   DR I+  +P
Sbjct: 162 VLREVTDSGLRGRGGGGYPTGLKWSTVAKMPATQ-KYVICNADEGDPGAFMDRAILESDP 220

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG---YDV 159
           H ++EG  IA++AIGA+ A++YVR E+    E LQ A+ +   SGLLG+  K+G   + +
Sbjct: 221 HRVLEGMAIAAYAIGANKAYVYVRAEYPLAVERLQTAIRKAKRSGLLGN--KIGDTQFSL 278

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ +  GAGA++CGEETAL+ S+EG +GQPR +PP+PA  GL+G PT +NNVE+ A +  
Sbjct: 279 EVEIRLGAGAFVCGEETALMASIEGLRGQPRPRPPYPAEAGLWGYPTLINNVETFANIAP 338

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+R G  W++  G E ++GTK+F+++G +     +E  M  +  ++IE   GGI GG   
Sbjct: 339 IVREGGDWFASIGTERSKGTKVFALAGTITNTGLIEVPMGTSLRDIIEVIGGGIPGG-KA 397

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+PA  +  A+ DYD LK +G+ +G+  +IVMD ++ ++        F
Sbjct: 398 FKAVQTGGPSGGCIPAQHLDIAV-DYDSLKTLGTMMGSGGMIVMDETSSMVDVARYFMEF 456

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+C PCR GT  M  +++RL K  A + E+ LL E+ + ++  ++C LG  A  
Sbjct: 457 CMTESCGKCIPCRTGTQQMHSILDRLAKSQATRAELTLLEELCEVVQATSLCGLGQTAPN 516

Query: 400 PIQGLIKNFRPLIEERIDQ 418
           P+   ++ FR   E ++ +
Sbjct: 517 PVLSTMRYFRDEYEAKLGE 535


>gi|73748098|ref|YP_307337.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1]
 gi|147668874|ref|YP_001213692.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|289432124|ref|YP_003461997.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|73659814|emb|CAI82421.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1]
 gi|146269822|gb|ABQ16814.1| NADH dehydrogenase subunit F [Dehalococcoides sp. BAV1]
 gi|288945844|gb|ADC73541.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 417

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 222/387 (57%), Gaps = 9/387 (2%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           ++ G +  + K L    + +I EVK S L GRGGA F TG+KW    K  ++ P Y+V N
Sbjct: 23  LADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFPTGLKWELTRKEKAN-PKYIVCN 81

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           A E EPGT KDR I++++PH ++EG +IA++A+G    FI+ R  + +E E  Q A+D+ 
Sbjct: 82  ASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQGFIHAREVYTQEIELFQKAIDQA 141

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
              G LG N     + +DI  +  AGAYICGEETAL ESLEG +G P  +PP+P  VGL 
Sbjct: 142 TERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFESLEGHRGIPATRPPYPVQVGLM 201

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
             PTTVNNVE++  +P I+  GA W++  G  +  GTKLF +SG+V  P   E  +    
Sbjct: 202 DKPTTVNNVETLCNIPAIINNGADWFASIGHPDYPGTKLFCLSGNVKKPGVFELPLGTNL 261

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            +L+E   GG+ G +    AV+PGG S   L    +    +D+  L + G+ LG+ AVIV
Sbjct: 262 KDLLEAG-GGVDGKFK---AVLPGGISSSLLTETDIS---LDFKTLAKAGTMLGSGAVIV 314

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           ++  T ++     ++ F+  E CG+C+ CREGT     ++ R  +G   + E++ L E+ 
Sbjct: 315 INSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAEILSRFSRGQGNRNELEWLLELH 374

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++    C LG  A       I+NF+
Sbjct: 375 EVMKDTASCGLGQVALNVAASAIRNFK 401


>gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum]
          Length = 597

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 156/398 (39%), Positives = 235/398 (59%), Gaps = 6/398 (1%)

Query: 15  LQGKSLSDSMSRGH-WDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
           +Q + ++D +     ++ + K + K  R+ +I E+K SGLRGRGG GF TG+KW F    
Sbjct: 126 IQAEDINDYIETAEGYEAIKKAITKMTREDVIEEIKRSGLRGRGGGGFPTGLKWQFAYNA 185

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
             D+  Y++ NADE +PG   DR ++  +PH +IE  +I  +AIGA+  +IY+R E+   
Sbjct: 186 PGDQ-KYVICNADEGDPGAFMDRSVLEGDPHAVIEAMMITGYAIGANHGYIYIRAEYPVA 244

Query: 133 RESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
            + L+ A+ +   SG LG N     ++ DI +  GAGA++CGEETAL+ S+EGK+G    
Sbjct: 245 IKRLEIALAQARESGYLGKNVMGTDFEFDIELKLGAGAFVCGEETALINSIEGKRGMANP 304

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFPAN G++  PT +NNVE++A VP I+ +GA W++  G E ++GTK+F++ G +N  
Sbjct: 305 KPPFPANEGVWKKPTIINNVETLANVPKIILKGADWFASIGTEKSKGTKVFALGGKINNV 364

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             VE  M  T  E+I +  GGI  G     AV  GG S  C+ A  +   I D+D L  +
Sbjct: 365 GLVEVPMGTTLREIIYEVGGGIPNG-KAFKAVQTGGPSGGCITADYLDTQI-DFDSLTAL 422

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS +G+  +IVMD    ++        F   ESCG+CTPCREGT  M+ ++ER+ +G   
Sbjct: 423 GSMMGSGGMIVMDEDNCMVDIAKFFLDFTVEESCGKCTPCREGTKRMLEILERISEGHGT 482

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++D L  ++  I+   +C LG  A  P+   +K FR
Sbjct: 483 LEDLDKLERLANTIKSTALCGLGQTAPNPVLSTLKYFR 520


>gi|300854657|ref|YP_003779641.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
 gi|300434772|gb|ADK14539.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
          Length = 626

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 157/410 (38%), Positives = 245/410 (59%), Gaps = 10/410 (2%)

Query: 4   DQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFS 61
           +Q+RI   N   L  + +++ ++   ++ + ++L +   D  I+E+K SGLRGRGG GF 
Sbjct: 143 NQERIALRNCGLLNPEDITEYIAMNGYEALGRVLTQMTPDSTIDEIKKSGLRGRGGGGFP 202

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K  SD   +++ NADE +PG   DR I+  +P++++E   IA + IGA+  
Sbjct: 203 TGVKWEMTRKSKSDT-KFMICNADEGDPGAFMDRSILEGDPNSVLEAMAIAGYCIGANKG 261

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETAL 178
           +IY+R E+      L+ A+ + Y  GLLG N   +   + +D+   +GAGA+ICGEETAL
Sbjct: 262 YIYIRAEYPLAINRLKIALKQAYNLGLLGDNILGTNFSFHIDL--KYGAGAFICGEETAL 319

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG +G+P +KPPFP+ +GL+  PT +NNVE++A +P I+ +G+ W+S  G E ++G
Sbjct: 320 INSIEGGRGEPTVKPPFPSQIGLWKKPTNINNVETLANIPPIILKGSKWFSSIGTEKSKG 379

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +N    VE  M IT  E+I    GGIRGG     AV  GG S  C+PA  +
Sbjct: 380 TKVFALAGKINNVGLVEVPMGITLREIIYNLGGGIRGG-KKFKAVQTGGPSGGCIPADHL 438

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             AI DY+ L E+GS +G+  +IVMD    ++        F   ESCG+CT CR G   +
Sbjct: 439 DTAI-DYESLTEIGSMMGSGGMIVMDEDNCMVNIAKFYLQFSVDESCGKCTACRIGNKRL 497

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++E + KG      ++ L ++S  I+   +C LG  +  PI   +K F
Sbjct: 498 LEILEDITKGKGTMEHLEGLKDLSYVIKDSALCGLGQTSPNPIISTMKFF 547


>gi|312144096|ref|YP_003995542.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
 gi|311904747|gb|ADQ15188.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
          Length = 410

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 153/396 (38%), Positives = 234/396 (59%), Gaps = 7/396 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           L+G  L D +   H++++   L   R+ II +VK S L+GRGGAGF TG+KW F   + +
Sbjct: 8   LKGDRLDD-VDNYHFNSIKNALTMSREEIIQKVKDSELKGRGGAGFPTGLKWQFAKDIDN 66

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D   YLV N DE EPGT KDR ++   P  ++EG +IA++A+GA  A+IY+RGE+I   +
Sbjct: 67  DN-KYLVCNGDEGEPGTFKDRYLLEERPLKVLEGIMIAAYAVGAARAYIYIRGEYINAIK 125

Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
             Q  +D+     +LG N     + +++ +  GAGAY+CG+ET+LL S+EGK+G+ R+KP
Sbjct: 126 KFQDVIDKAEKKNILGENIFSSDFSLELRLVRGAGAYVCGDETSLLNSIEGKRGRSRIKP 185

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P+P   GL+  PT VNNVES+     I    +  +S  G E +RGTKL S+SG VN P  
Sbjct: 186 PYPIQKGLFDNPTVVNNVESLCCAAEIFNEDSVEFSELGVEGSRGTKLISLSGDVNAPGL 245

Query: 254 VE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            E E   +T +++I K   G+RG  + L  +IPGG S   + A  +      Y   +++G
Sbjct: 246 YEIEFAKVTLNDIIYKLGQGMRGS-ETLSFIIPGGVSTALIKAEDLELPYT-YQTFEKLG 303

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVI ++ S D++  +  +S FY  E+CG C PCREG   + R+++R  K    +
Sbjct: 304 SSLGSGAVIAVNESHDLLDLMLNVSRFYMDETCGTCFPCREGNRQINRILKR-YKDNESE 362

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            + +L+ ++   I+    C LG ++   I  +I N+
Sbjct: 363 LDFELINDIGNTIKLAARCGLGQSSLSFISSVINNY 398


>gi|270307597|ref|YP_003329655.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS]
 gi|270153489|gb|ACZ61327.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS]
          Length = 417

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 221/387 (57%), Gaps = 9/387 (2%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           ++ G +  + K L    + +I EVK S L GRGGA F TG+KW    K  ++ P Y+V N
Sbjct: 23  LADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFPTGLKWELTRKEKAN-PKYIVCN 81

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           A E EPGT KDR I++++PH ++EG +IA++A+G    FI+ R  +  E E  Q A+D+ 
Sbjct: 82  ASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQGFIHAREVYTEEIELFQKAIDQA 141

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
              G LG N     + +DI  +  AGAYICGEETAL ESLEG +G P  +PP+P  VGL 
Sbjct: 142 TERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFESLEGHRGIPAARPPYPVQVGLM 201

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
             PTTVNNVE++  VP I+  GA W++  G  +  GTKLF +SG+V  P   E  +    
Sbjct: 202 DKPTTVNNVETLCNVPAIINNGADWFASIGHPDYPGTKLFCLSGNVKEPGVFEMPLGTNL 261

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            +L+E   GG+ G +    AV+PGG S   L    +    +D+  L + G+ LG+ AVIV
Sbjct: 262 KDLLEAG-GGVDGKFK---AVLPGGISSSLLTETDIS---LDFKTLAKAGTMLGSGAVIV 314

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           ++  T ++     ++ F+  E CG+C+ CREGT     ++ R  +G   + E++ L E+ 
Sbjct: 315 INSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAEILSRFSRGQGNRNELEWLLELH 374

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++    C LG  A       I+NF+
Sbjct: 375 EVMKDTASCGLGQVALNVAASAIRNFK 401


>gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
          Length = 597

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 151/394 (38%), Positives = 228/394 (57%), Gaps = 6/394 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +++ ++++R  +  + K L E   + ++ E+K SGLRGRGGAGF TG+KW    K     
Sbjct: 128 ENIEEAIARDGYAALGKCLTEMTPEQVVAEIKKSGLRGRGGAGFPTGLKWEIAAKSRPGE 187

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V NADE +PG   DR ++  +PH+++E   I  + IGA    IY+R E+      L
Sbjct: 188 QKYVVCNADEGDPGAFMDRSLLEGDPHSILEAMAICGYCIGADKGLIYIRAEYPLAIHRL 247

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q A+ +    GLLG +    G++ +I + +GAGA++CGEETAL+ S+EGK+G+P  KPPF
Sbjct: 248 QVAIQQAEEYGLLGKDILGTGFNFEIELRYGAGAFVCGEETALIHSMEGKRGEPTFKPPF 307

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G  G PT VNNVE+ A +P I+ +GA W++  G E ++GTK+F+++G +N    +E
Sbjct: 308 PAQSGYLGKPTNVNNVETYANIPVIINKGADWFASIGTEKSKGTKVFALAGKINNVGLIE 367

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M IT  E+I +  GG   G     AV  GG S  CL    +   I DYD L   GS +
Sbjct: 368 VPMGITLREIIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DYDSLVAAGSMM 425

Query: 316 GTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           G+  +IVMD   D + AI +  + F   ESCG+CTPCR G   ++ ++ ++  G     +
Sbjct: 426 GSGGMIVMDED-DCMVAIAKFYLGFTVDESCGKCTPCRVGNRRLLEILTKITDGNGTMED 484

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++ L  +S  I+   +C LG  +  P+   I NF
Sbjct: 485 LEELKNLSAVIKDTALCGLGQTSPNPVLSTINNF 518


>gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 650

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 152/385 (39%), Positives = 230/385 (59%), Gaps = 6/385 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G++   D +L K    +I+ V  SGLRGRGGAGF TG KW  +    +  P ++V NADE
Sbjct: 166 GYFALADVVLNKKPQEVIDTVIKSGLRGRGGAGFPTGRKWE-LAAAQNVTPKFVVCNADE 224

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR I+  +PH+++E   IA +  GA   +IYVR E+    E L+ A+++   +
Sbjct: 225 GDPGAFMDRSILEGDPHSVLEAMAIAGYCTGAGQGYIYVRAEYPIAVERLEIAINQAKEA 284

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           GLLG       ++ DI +  GAGA++CGEETALL+S+ G++G+PR +PP+PA  GL+G P
Sbjct: 285 GLLGRGIFGTTFEFDIDLRFGAGAFVCGEETALLQSVMGQRGEPRPRPPYPAQEGLWGKP 344

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T +NNVE+ A +P ILR G  WY G G  +++G+K+FS++G +N    +E  M  T  + 
Sbjct: 345 TLINNVETYANIPVILREGWEWYYGHGTASSKGSKVFSLAGKINNTGLIEVPMGTTL-KT 403

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           I    GG   G     AV  GG S  C+P   +   + DY+ LKE+GS +G+  +IVM  
Sbjct: 404 IIFDIGGGITGGKKFKAVQTGGPSGGCIPEKYLDLPV-DYESLKEIGSIMGSGGMIVMSE 462

Query: 326 STDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
             D +  I R  + F + ESCG+CTPCR GT  ++ ++  +  G  +  ++DLL E++ +
Sbjct: 463 D-DCMVDIARFYLEFTQDESCGRCTPCRVGTKRLLEILRIITGGKGEMEDLDLLEELAGD 521

Query: 385 IEGRTICALGDAAAWPIQGLIKNFR 409
           I   ++C LG  A  P+   +++FR
Sbjct: 522 IRDASLCGLGQTAPNPVLSTLRHFR 546


>gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 588

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 158/419 (37%), Positives = 239/419 (57%), Gaps = 6/419 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q+R+  N  G +  +++ + ++ G +  +   L    + II E++A+ LRGRGG GF TG
Sbjct: 108 QERVVINRSGFIDPENIDEYLNSGGYQALQLGLTMEPEDIITEIQAANLRGRGGGGFPTG 167

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW +  K       Y+V NADE +PG   DR I+  +PH +IEG  IA  AIGA+   I
Sbjct: 168 LKWEYAKKGDEKTEKYVVCNADEGDPGAFMDRSILEGDPHVVIEGMAIAGLAIGANRGII 227

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLES 181
           YVR E+    + L+ A+ +    G LG    LG  +  DI +  GAGA++CGEETAL+ES
Sbjct: 228 YVRAEYPLAVKRLEKAISQAKEYGYLGERV-LGSNFSFDIEIKQGAGAFVCGEETALIES 286

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           + G +G PR +PPFPA  GLY  PT +NNVE++A +P IL  GA  Y+  G ++++GTK+
Sbjct: 287 VHGNRGMPRPRPPFPAEKGLYDSPTILNNVETLANIPVILNWGAQKYNELGTKDSKGTKV 346

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+I+G V      E  M I   +LI    GGI+   +   AV  GG S  CLP   +   
Sbjct: 347 FAITGKVRNTGLCEVPMGIKLKDLIFDIGGGIKDDKE-FKAVQIGGPSGGCLPQESLDFP 405

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I +YD L + G+ +G+  ++VMD ST ++        F + ESCG+C PCREGT  ++ +
Sbjct: 406 I-EYDSLIDAGAMMGSGGLVVMDTSTCMVDLSRFFLNFTQSESCGKCNPCREGTKRLLEI 464

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           + R++ G  +  ++ +L  +  NI   ++C LG +A  P+   I+ F     E I+  +
Sbjct: 465 LNRIIDGYGENEDLKILNRLGNNIINTSLCGLGQSAPNPVLSTIRYFENEYLEHINNKY 523


>gi|149925366|ref|ZP_01913630.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105]
 gi|149825483|gb|EDM84691.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105]
          Length = 573

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 149/379 (39%), Positives = 219/379 (57%), Gaps = 16/379 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  + +I+ + +SGLRG GGAGF  G KW+ + +     P  + VN DE EPGT KDR 
Sbjct: 205 QRTVESVIDTLSSSGLRGLGGAGFPAGKKWAIVRE--QTAPRLMAVNIDEGEPGTFKDRS 262

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            +   PH  +EG +IA++A+ A   +IY+R E+   R  LQ  +       LL +   + 
Sbjct: 263 YLERNPHQFLEGMLIAAWAVNASAIYIYLRDEYHACRSMLQNEL------ALLKAKPPMP 316

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I +  GAGAYICGEE+A+LES+EGK+G PRL+PP+ A VGL+  PT V+N E++  
Sbjct: 317 NMPVIELRRGAGAYICGEESAMLESIEGKRGLPRLRPPYVAQVGLFNKPTLVHNFETLYW 376

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           VP IL +GA W++  GR    G + FS+SG VN P        IT +ELI ++CGG++ G
Sbjct: 377 VPVILEKGAQWFASQGRHGRGGFRSFSVSGRVNKPGIHLAPAGITLNELISEYCGGMQTG 436

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L   +PGG+S   LPA  +    +D+D L+  G  +G+AA++V  ++   +     L
Sbjct: 437 -HTLYGYLPGGASGGILPA-VLADVPLDFDTLQPHGCFIGSAAIVVFSQADSAVNMARNL 494

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
             F+ HESCGQCTPCR GT   + ++ +       +  + LL E+S  +   +IC LG A
Sbjct: 495 MRFFVHESCGQCTPCRTGTAKALALINQ------PQWNVPLLQELSAVMRDASICGLGQA 548

Query: 397 AAWPIQGLIKNFRPLIEER 415
           A  PI  +I+ F   +E R
Sbjct: 549 APNPIDCVIRYFPQELESR 567


>gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
          Length = 626

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 157/393 (39%), Positives = 229/393 (58%), Gaps = 5/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D ++RG ++++ K L     + II  VKASGLRGRGG GF TG+KW F  K   D  
Sbjct: 160 SIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGGGFPTGLKWEFTRKAQGDI- 218

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            ++V N DE +PG   +R +++ +PH ++EG +IA +A+GA   + Y+R E+       +
Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLKRDPHLVLEGMIIAGYAVGAQKGYAYIRAEYPFAVRMFK 278

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+++    GLLG N    G+  D+ V  GAGA++CGEETALL S+EGK+G PR KPPFP
Sbjct: 279 KAIEDAKKMGLLGENILGTGFSFDVEVKEGAGAFVCGEETALLASIEGKRGMPRPKPPFP 338

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNVE+ A +P ILR G   Y   G EN+ GTK+FS++G +     +E 
Sbjct: 339 AQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSPGTKMFSVAGPLKATGIIEV 398

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++I   CGG   G +   AV  GG S  CL +       +DYD LK+  + +G
Sbjct: 399 EFGTTLRDIIYNICGGFVEG-EEFKAVQIGGPSGACL-SEDFIDMPLDYDTLKKADAMVG 456

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++V+ + T +++       F K ESCG+C PCREGT     ++E+   G A   ++ 
Sbjct: 457 SGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTHGKATYEDLK 516

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  +SK I+  ++C LG  A  PI   +K FR
Sbjct: 517 ALEHLSKTIKTASLCGLGKTAPNPILSTLKLFR 549


>gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
 gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
          Length = 626

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 157/393 (39%), Positives = 228/393 (58%), Gaps = 5/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D ++RG ++++ K L     + II  VKASGLRGRGG GF TG+KW +  K   D  
Sbjct: 160 SIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGGGFPTGLKWEYTGKARGDL- 218

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            ++V N DE +PG   +R ++  +PH ++EG +IA +A+GA   + Y+R E+       +
Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGAQKGYAYIRAEYPFAVRMFK 278

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+++    GLLG N    G+  D+ V  GAGA++CGEETALL S+EGK+G PR KPPFP
Sbjct: 279 KAIEDAKKMGLLGENILGTGFSFDVEVKEGAGAFVCGEETALLASIEGKRGMPRPKPPFP 338

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL G PT +NNVE+ A VP +LR G   Y   G EN+ GTK+FS++G +     +E 
Sbjct: 339 AQSGLLGKPTLINNVETYANVPRVLRDGVEEYRKRGTENSPGTKMFSVAGPLKATGIIEV 398

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  E+I   CGG   G +   AV  GG S  CL +       +DYD LK+  + +G
Sbjct: 399 EFGTTLREIIYNICGGFVEG-EEFKAVQIGGPSGACL-SEDFLDMPLDYDTLKKADAMVG 456

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++V+ + T +++       F K ESCG+C PCREGT     ++E+   G A   +++
Sbjct: 457 SGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTHGKATYEDLE 516

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  +SK I+  ++C LG  A  PI   +K FR
Sbjct: 517 TLEHLSKTIKTASLCGLGKTAPNPILSTLKLFR 549


>gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 631

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 161/382 (42%), Positives = 229/382 (59%), Gaps = 7/382 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++ E+KASGLRGRGG GF TGMKW F  K    +  Y+V NADE +PG   DR I+  +P
Sbjct: 190 VVAEIKASGLRGRGGGGFPTGMKWDFTAKA-EGKEKYVVCNADEGDPGAFMDRSILEGDP 248

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--D 160
           + LIE  +I+ +A+GA   ++YVR E+      L  A+ +    GLLGSN  LG D   D
Sbjct: 249 NALIEAMIISGYAVGAQWGYVYVRAEYPIAVGRLDLAIKQAREKGLLGSNI-LGTDFSFD 307

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + +  GAGA++CGEETALL S+EGK+G PR +PPFPA  GL+G PT +NNVE+ A +P I
Sbjct: 308 MEIRLGAGAFVCGEETALLNSIEGKRGMPRPRPPFPAVKGLWGKPTLINNVETFANIPQI 367

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           +  GA  +   G E ++GTK+F++ G +N+   VE  M  T  E++ +  GGI  G    
Sbjct: 368 ILHGAEEFIKTGTEKSKGTKVFALGGKINHTGLVEIPMGTTLREIVYEIGGGIPNG-KAF 426

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AV  GG S  C+    +   I DYD L  +GS +G+  +IVMD    ++        F 
Sbjct: 427 KAVQTGGPSGGCISVEHLDTPI-DYDNLIALGSMMGSGGMIVMDEDNCMVDIARFFLDFT 485

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCG+CTPCREGT  M+ ++ER+ +G  ++ +I+ L  ++++I+  ++C LG  A  P
Sbjct: 486 VDESCGKCTPCREGTKRMLEILERITEGKGKEGDIERLESLAQSIKISSLCGLGQTAPNP 545

Query: 401 IQGLIKNFRPLIEERIDQYHRC 422
           I   +K FR   E  I Q  +C
Sbjct: 546 ILSTLKYFRHEYEAHI-QDKKC 566


>gi|323703081|ref|ZP_08114736.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323531975|gb|EGB21859.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 645

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 161/387 (41%), Positives = 236/387 (60%), Gaps = 10/387 (2%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G++   D I  K    +I  +  SGLRGRGG GF TG KW+F  +   D P Y+V NADE
Sbjct: 165 GYFALYDVIHNKKPQEVIEIISKSGLRGRGGGGFPTGKKWAFTAQA-KDFPKYVVCNADE 223

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR I+  +PH+++E   IA ++IGA+   IYVR E+    + L+ A+ +    
Sbjct: 224 GDPGAFMDRSILEGDPHSVLEAMAIAGYSIGANQGIIYVRAEYPIAIKRLELAIRQAREM 283

Query: 147 GLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
           GLLGS   +S+  +D+D+ +  GAGA++CGEETALL+S  G++G+PR +PPFPA  G   
Sbjct: 284 GLLGSRLFDSEFSFDIDLRL--GAGAFVCGEETALLKSAMGQRGEPRPRPPFPAVCGFRN 341

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT +NNVE+ A VP ILR+G +WY+  G E  +GTK+FSI+G +N    +E  M  T  
Sbjct: 342 KPTLLNNVETYANVPIILRKGWAWYAAMGTETCKGTKVFSIAGKINNTGLIEVPMGTTLR 401

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
            +I    GGI GG     AV  GG S   +PA  +   I DY+ L + GS +G+  +IVM
Sbjct: 402 TIIYDIGGGIPGGR-AFKAVQTGGPSGGVIPAHLLDTPI-DYESLSQAGSMMGSGGLIVM 459

Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           D  TD +  I +  + F + ESCG+CTPCR GT  M+ +MER+ +G  + ++++ L E++
Sbjct: 460 D-ETDCMVDIAKFYLQFSQDESCGKCTPCRIGTKRMLEIMERITQGKGEMKDLEELEELA 518

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409
            +I+  ++C LG  A  P+   ++ FR
Sbjct: 519 GDIKDASLCGLGQTAPNPVLSTLRFFR 545


>gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4]
 gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4]
          Length = 626

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 157/410 (38%), Positives = 234/410 (57%), Gaps = 9/410 (2%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           N+  +Q +SL++ +    +  + K I +  +  II+E+K SGLRGRGGAGF TG KW   
Sbjct: 152 NVEKIQLESLNEYIGADGYQALHKAIFDLDQKDIIDEMKKSGLRGRGGAGFPTGRKWESA 211

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            KV  +   Y++ NADE +PG   DR I+  +PH+++EG  I   AIGA+  FIYVR E+
Sbjct: 212 YKV-ENSQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGANQGFIYVRAEY 270

Query: 130 IRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
               + L+ A+ +     LLG N   S   +D+++    G+GA++CGE TAL+ES+EG++
Sbjct: 271 PIAVKRLRIAIQQAKEMNLLGDNIFGSDFSFDIEL--RLGSGAFVCGEGTALMESIEGRR 328

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PR K    A  GL+  PT +NNVE+ A VP I+ RGA W++ FG E + GTK+F++ G
Sbjct: 329 GMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYRGADWFTSFGTEGSPGTKVFALGG 388

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V     VE  M  T  E+I    GGI+ G     AV  GG S  C+P  +     +D++
Sbjct: 389 KVVNTGLVEVPMGSTLREIIFDIGGGIKDG-KKFKAVQTGGPSGGCIPE-EFLDTPVDFE 446

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L ++GS +G+  +IVMD    ++        F   ESCG+C PCREGT  M+ ++E++ 
Sbjct: 447 SLGKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKRMLEILEKIT 506

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            G  +  +I+ L ++   I   ++C LG  A  P+   +K FR   E  I
Sbjct: 507 SGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHI 556


>gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
 gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
          Length = 598

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 162/416 (38%), Positives = 247/416 (59%), Gaps = 5/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTG 63
           Q  + +N   +  +S+ + +++  +  V ++L       +I+E+K SGLRGRGG GF TG
Sbjct: 118 QRVVLSNCGKINPESIEEYIAQDGYQAVGEVLTTMEPQEVIDEIKKSGLRGRGGGGFPTG 177

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW F      D+  Y++ NADE +PG   DR ++  +PH L+EG +IA +AIGA   +I
Sbjct: 178 VKWQFAYDAEGDK-KYIICNADEGDPGAFMDRSLLEGDPHKLLEGMIIAGYAIGADEGYI 236

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    E L+ A+D+    GLLG N     +  D+ +  GAGA++CGEETAL+ S+
Sbjct: 237 YVRAEYPLAIERLEKAIDQANEHGLLGENLFGTDFSFDLQIKAGAGAFVCGEETALMASI 296

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++G PR +PPFPA  GL+G PT +NNVE+   VP I+  GA  +S  G E+++GTK+F
Sbjct: 297 EGERGMPRPRPPFPAQKGLWGKPTNINNVETYGNVPEIINNGAEAFSEIGTEDSKGTKVF 356

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G +N     E  M IT  E+I+   GGI  G D   AV  GG S  CLP  ++   I
Sbjct: 357 ALTGKINNTGLAEVPMGITMREIIDDIGGGIDEGKD-FKAVQIGGPSGGCLPEEKLDLPI 415

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            DYD L + G+ +G+  ++VMD  T ++        F   ESCG+CTPCREGT  M+ ++
Sbjct: 416 -DYDSLLDAGAMMGSGGLVVMDEDTCMVDVARFFLNFTVSESCGKCTPCREGTKRMLEIL 474

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           E++  G     +ID L  +++ I+  ++C LG  A  P+   ++ FR   E  +++
Sbjct: 475 EKITDGEGTLADIDKLESLAETIKTASLCGLGQTAPNPVLSTLRYFRDEYEAHVEE 530


>gi|148657645|ref|YP_001277850.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1]
 gi|148569755|gb|ABQ91900.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1]
          Length = 537

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 147/370 (39%), Positives = 236/370 (63%), Gaps = 9/370 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ V  SGLRGRGGAG+ TG+KW+ + K   DR  Y+V NADE +PG   DR I+  +P
Sbjct: 155 VIDVVTRSGLRGRGGAGYPTGLKWATVAKSHGDR-KYVVCNADEGDPGAFMDRSIIESDP 213

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDV 159
           H ++EG  IA++A+GA   ++YVR E+    + LQ A+ +    GLLG+   +S   + +
Sbjct: 214 HKVLEGMAIAAYAVGADQGYVYVRAEYPLAIQRLQRAIAQARRHGLLGAQIFDSGFTFRI 273

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI V  GAGA++CGEETAL+ S+EG++GQPR +PP+PA  GL+G PT +NNVE+ A +P 
Sbjct: 274 DIRV--GAGAFVCGEETALMASIEGRRGQPRPRPPYPAESGLWGRPTLINNVETFANIPP 331

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+R GA W++  G E ++GTK+F+++G + +   +E  M +T  +++E+  GG+  G   
Sbjct: 332 IIRNGAEWFAAIGAETSKGTKVFALTGKIRHTGLIEVPMGVTLRQIVEEMGGGVPDG--R 389

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           + AV  GG S  C+PA  +   + DY+ L+ +GS +G+  ++VMD +T+++        F
Sbjct: 390 VKAVQTGGPSGGCIPAALLDTPV-DYESLQRVGSIMGSGGMVVMDDATNMVDVAHFYMEF 448

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
            K ESCG+C PCR GT  M+ +++ +  G A   +++ L ++   ++  ++C LG +A  
Sbjct: 449 CKDESCGKCIPCRAGTAQMLHMLDLIRAGQATIADLEQLEQLCVMVKETSLCGLGQSAPN 508

Query: 400 PIQGLIKNFR 409
           P+   ++ FR
Sbjct: 509 PVLSTMRYFR 518


>gi|218244989|ref|YP_002370360.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801]
 gi|218165467|gb|ACK64204.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801]
          Length = 535

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 150/406 (36%), Positives = 248/406 (61%), Gaps = 9/406 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +S+ + +SRG +  + ++L E   + +I EV  SGLRGRGG G+ TG+KW
Sbjct: 125 VLENSGQIDPESIEEYISRGGYQQLHQVLLEMTPNKVIEEVTKSGLRGRGGGGYPTGVKW 184

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           + + K+ + +  Y++ NADE +PG   DR I+  +PH ++EG  IA +A+GA+  +IY+R
Sbjct: 185 ATVAKMPTQQ-KYVICNADEGDPGAFMDRAILESDPHRVLEGMAIAGYAVGANHGYIYIR 243

Query: 127 GEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
            E+    + L+ A+ +    GL+G    +S   + +DI V  GAGA++CGEETAL+ S+E
Sbjct: 244 AEYPLAIQRLEKAIQQAKKYGLMGVQIFDSPFDFKIDIRV--GAGAFVCGEETALMASVE 301

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+G P  +PP+PA  GL+G PT +NNVE+ A +  I+R G +WY+  G E ++GTK+F+
Sbjct: 302 GKRGTPHPRPPYPAESGLWGHPTLINNVETYANIVPIIREGGAWYASIGTEKSKGTKVFA 361

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           ++G V     +E  M  T  E++E+  GG+  G + + AV  GG S  C+P   +    +
Sbjct: 362 LTGKVKNIGLIEVPMGTTIREIVEEIGGGVSDG-EKVKAVQTGGPSGGCIPE-HLFDTPV 419

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           +YD L+++G+ +G+  +IVMD ST +++       F + ESCG+C PCR GT  +  ++ 
Sbjct: 420 EYDSLQKLGTIMGSGGMIVMDESTSMVEISRFYMEFCREESCGKCVPCRTGTVQLYNLLT 479

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +LV+G A  R++  L  + + ++  ++C LG  A  P+   +  FR
Sbjct: 480 KLVEGQANNRDLAQLEALCQMVKETSLCGLGMTAPNPVLSTLHYFR 525


>gi|302878799|ref|YP_003847363.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Gallionella capsiferriformans ES-2]
 gi|302581588|gb|ADL55599.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Gallionella capsiferriformans ES-2]
          Length = 626

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 150/385 (38%), Positives = 210/385 (54%), Gaps = 16/385 (4%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L++  D  + E+K S LRGRGGAGFSTGMKW F      D  HY+V NADE EPGT KDR
Sbjct: 220 LDRAADATLQEIKISKLRGRGGAGFSTGMKWEFCRNAKGD-AHYVVCNADEGEPGTFKDR 278

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--S 153
            ++      + EG  + ++ IGA   F+Y+RGE+      LQA +       LLGS    
Sbjct: 279 VLLNSYADLVFEGMTLCAYVIGAKKGFLYLRGEYRYLLAPLQAVLQRRREQNLLGSRILG 338

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
           +  +D DI +H GAGAYICGEE+AL+ESLEGK+G PR +PP+P   G    PT V+NVE+
Sbjct: 339 QAAFDFDIEIHLGAGAYICGEESALIESLEGKRGTPRNRPPYPVTAGYLNQPTVVSNVET 398

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A    I   G +WY+G G EN+ G+KLFS+SG  +YP   E    +T  +++   CG  
Sbjct: 399 FASTSLISLHGGAWYAGIGAENSSGSKLFSVSGDCDYPGIYEYPFGVTVAQVLAD-CGA- 456

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                N  AV   G S  C+ A +    I  +D +   G      A +V D+  D+ +  
Sbjct: 457 ----KNTQAVQISGPSGMCIAAHEFDRRI-SFDDIPTAG------AFMVFDQRRDMFEVA 505

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                F+ HESCG CTPCR GT  +  +M++L +G     ++  + ++   ++  + C L
Sbjct: 506 RNFVHFFAHESCGFCTPCRVGTALLSNLMDKLNEGQGSPYDLAEIEKLDSLLQSTSHCGL 565

Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQ 418
           G  A  P+   +  FRP  E R+  
Sbjct: 566 GRTACNPVLHTLAKFRPAYECRLSH 590


>gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 626

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 157/393 (39%), Positives = 229/393 (58%), Gaps = 5/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D ++RG ++++ K L     + II  VKASGLRGRGG GF TG+KW F  K   D  
Sbjct: 160 SIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGGGFPTGLKWEFTRKAQGDI- 218

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            ++V N DE +PG   +R ++  +PH ++EG +IA +A+GA   + Y+R E+    +  +
Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGAQKGYAYIRAEYPFAVKMFK 278

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+++    GLLG N    G+  D+ V  GAGA++CGEETALL S+EGK+G PR KPPFP
Sbjct: 279 KAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETALLASIEGKRGMPRPKPPFP 338

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNVE+ A +P ILR G   Y   G EN+ GTK+FS++G +     +E 
Sbjct: 339 AQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSPGTKMFSVAGPLKATGIIEV 398

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++I   CGG   G +   AV  GG S  CL +       +DYD LK+  + +G
Sbjct: 399 EFGTTLRDIIYNICGGFVEG-EEFKAVQIGGPSRACL-SEDFIDMPLDYDTLKKADAMVG 456

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++V+ + T +++       F K ESCG+C PCREGT     ++E+   G A   ++ 
Sbjct: 457 SGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTHGKATYEDLK 516

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  +SK I+  ++C LG  A  PI   +K FR
Sbjct: 517 ALEHLSKTIKTASLCGLGKTAPNPILSTLKLFR 549


>gi|182417722|ref|ZP_02949040.1| uptake hydrogenase [Clostridium butyricum 5521]
 gi|237668967|ref|ZP_04528951.1| NADH dehydrogenase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378446|gb|EDT75977.1| uptake hydrogenase [Clostridium butyricum 5521]
 gi|237657315|gb|EEP54871.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 656

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 224/370 (60%), Gaps = 7/370 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+E+  S LRGRGG GF TG+KWS + K  ++   Y+V N DE +PG   DR +M  EP
Sbjct: 213 IIDEISESSLRGRGGGGFPTGIKWSQVYKQ-NEHDKYIVCNGDEGDPGAFMDRSMMEGEP 271

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161
           H +IEG +IA  A GAH  +IYVR E+    E L+ A+++  + GLLG N    G+D +I
Sbjct: 272 HRIIEGMIIAGIATGAHEGYIYVRAEYPLAVERLEKAIEQAESKGLLGDNILNSGFDFNI 331

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGE +AL  S+EG +G PR+KPP     GL+G PT +NNVE+   VP I+
Sbjct: 332 RISKGAGAFVCGEGSALTTSIEGSRGMPRVKPPRTVEKGLFGKPTVLNNVETFCNVPPII 391

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +GA+WY   G ENN GTK F+++G+V +   +E  M     E++    GG++ G     
Sbjct: 392 LKGANWYKTIGTENNYGTKAFALTGNVKHTGLIEVPMGTPLREIVFHIGGGVKDG--EFK 449

Query: 282 AVIPGGSSVPCL--PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           AV  GG S  CL   AG +    +D+D LK++G+ +G+  ++VM+  + +++       F
Sbjct: 450 AVQIGGPSGGCLCVNAGHL-DLKLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNF 508

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
            ++ESCG+C PCR GT  M+ ++  +V+G      I++L E+S  I    +C LG +A  
Sbjct: 509 TQNESCGKCVPCRAGTKRMLEILTDIVEGRGTNEHINMLEELSDTISATALCGLGKSACL 568

Query: 400 PIQGLIKNFR 409
           P++  +K F+
Sbjct: 569 PVKSTLKYFK 578


>gi|182677976|ref|YP_001832122.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633859|gb|ACB94633.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 516

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 158/414 (38%), Positives = 235/414 (56%), Gaps = 13/414 (3%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +  +SL D ++ G +  + + L+ G   +I EV  SGLRGRGGAGF
Sbjct: 99  LAKQQRLTFARCGIVDPRSLEDYLAHGGYRGLARALDLGPAAMIEEVVESGLRGRGGAGF 158

Query: 61  STGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            TG+KW     V   +P   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA
Sbjct: 159 PTGIKWR---TVAQTKPGQKYIVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGIAVGA 215

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEE 175
              +IY+R E+     +++AA++    +  LGSN   S+  +D+++ V  GAGAY+CGEE
Sbjct: 216 TKGYIYIRSEYPHAVHAMEAAIEAARRADYLGSNVAGSEWAFDIEVRV--GAGAYVCGEE 273

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TALLESLEGK+G  R KPP PA+VGL+GCPT +NNV S+A VP IL +GA  Y  +G   
Sbjct: 274 TALLESLEGKRGLVRAKPPLPAHVGLFGCPTVINNVMSLATVPFILAQGAKTYQDYGMGR 333

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           +RGT    ++G+V +   VE +  +T  EL+E   GG R G   + AV  GG      P 
Sbjct: 334 SRGTMPIQLAGNVKHGGLVEIAFGVTLGELVEGFGGGTRSG-RPVRAVQVGGPLGAYFPV 392

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +     DY+        +G   ++V D + D++K       F  HESCG+CTPCR G+
Sbjct: 393 -DLFDTPFDYEAFAARDGLIGHGGIVVFDDTVDMLKQARFAMEFCAHESCGKCTPCRIGS 451

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
                 ++++  G+  +  + L+ ++ + ++  ++CALG    +P+   + +F+
Sbjct: 452 TRGAETLDKIAHGMEAEHNLALVKDLCETMKFGSLCALGGFTPYPVMSALTHFQ 505


>gi|146419679|ref|XP_001485800.1| hypothetical protein PGUG_01472 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 243

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 127/195 (65%), Positives = 155/195 (79%), Gaps = 3/195 (1%)

Query: 229 SGFGRENNRGTKLFSIS---GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285
           SG  R   + T+  S S   GHVN PCTVEE MSI   EL+EKHCGG++GGWDNLL VIP
Sbjct: 17  SGLRRLVVKETREPSCSVFLGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIP 76

Query: 286 GGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESC 345
           GGSSVP +P       +MDYD LK++GSGLGTAAVIVM++ TD+I+AI R + FYKHESC
Sbjct: 77  GGSSVPVMPKHVCDNVLMDYDALKDVGSGLGTAAVIVMNKQTDMIRAIQRFAHFYKHESC 136

Query: 346 GQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           GQCTPCREGT W+ R+M+R VKG A ++EID+++E++K IEG TICALGDAAAWP+QGLI
Sbjct: 137 GQCTPCREGTTWLQRMMDRFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLI 196

Query: 406 KNFRPLIEERIDQYH 420
           K+FRPL+ ER+ QYH
Sbjct: 197 KSFRPLMVERMQQYH 211


>gi|13366092|dbj|BAB39382.1| hydrogenase diaphorase large subunit [Anabaena variabilis]
          Length = 541

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 141/390 (36%), Positives = 239/390 (61%), Gaps = 13/390 (3%)

Query: 25  SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           ++G+      + E   + +++ +  SGLRGRGGAG+ TG+KW+ + K   +R  +++ NA
Sbjct: 146 AQGYRSLYHVLREMTANEVVDTITRSGLRGRGGAGYPTGLKWATVAKAQGER-KFVICNA 204

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DE +PG   DR ++  +PH ++EG  IA++A+     +IY+R E+      LQ A+ +  
Sbjct: 205 DEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVRKQ-GYIYIRAEYPVAINRLQTAIRQAQ 263

Query: 145 ASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
             G+LG+   +S+  + +DI +  GAGAY+CGEETAL+ S+EGK+G P  +PP+PA  GL
Sbjct: 264 RLGILGTQIFDSRFDFKIDIRI--GAGAYVCGEETALMASIEGKRGTPHPRPPYPAESGL 321

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
           +G PT +NNVE+ A V  I+R+GA W++  G E ++GTK+F+++G +     +E  M  +
Sbjct: 322 WGYPTLINNVETYANVAPIIRKGAEWFASIGTEKSKGTKVFALAGKIRNTGLIEVPMGTS 381

Query: 262 FDELIEKHCGGIRGGWDN--LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
             +++E   GG+    DN  + AV  GG S  C+PA     +I+DY+ L ++GS +G+  
Sbjct: 382 LKQIVEAMGGGVP---DNGVVKAVQTGGPSGGCIPASAFE-SIVDYESLTQLGSMMGSGG 437

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +IVMD +T+++        F   ESCG+C PCR GT  + +++ ++ +G A   +++LL 
Sbjct: 438 MIVMDETTNMVDVARFFMEFCMDESCGKCIPCRVGTVQLHKLLTKISQGKASLADLELLE 497

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           E+   ++  ++C LG +A  P+   ++ FR
Sbjct: 498 ELCDMVKNTSLCGLGQSAPNPVFSTLRYFR 527


>gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
 gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
          Length = 628

 Score =  269 bits (687), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 158/408 (38%), Positives = 245/408 (60%), Gaps = 6/408 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  +++ + ++RG +  ++K L E     +I  VKASGLRGRGG GF T
Sbjct: 146 QMRIALRNCGAIDPENIDEYIARGGYLAIEKCLSEMTPAQVIETVKASGLRGRGGGGFPT 205

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW    +  +D+  Y+  NADE +PG   DR I+  +PH +IE   IA +AIGA   +
Sbjct: 206 GIKWGLAAQNKADQ-KYVCCNADEGDPGAFMDRSILEGDPHAVIEAMSIAGYAIGATQGY 264

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           +YVR E+      L+ A+++    GLLG N    G+  D+ +  GAGA++CGEETAL+ S
Sbjct: 265 VYVRAEYPIAVHRLRVAIEQAREYGLLGDNVLGTGFKFDMDIRLGAGAFVCGEETALMTS 324

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G+PR +PP+PA  GL+  PT +NNVE+ A +P I+ +GA W++  G + + GTK+
Sbjct: 325 IEGKRGEPRPRPPYPAVKGLFEKPTILNNVETYANIPQIILKGADWFNSIGTKGSTGTKV 384

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F++ G +N+   VE  M  T   ++E+  GGI  G     A + GG S  C+PA  +   
Sbjct: 385 FALGGKINHTGLVEVPMGTTLRTIVEEIGGGIPSGRPFKAAQM-GGPSGGCVPAEYLDVP 443

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I DYD L E+G+ +G+  +IVMD +T ++        F   ESCG+CTPCR GT  ++ +
Sbjct: 444 I-DYDSLIEIGAMMGSGGLIVMDDTTCMVDIAKFFLEFTVDESCGKCTPCRIGTKRLLEL 502

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++R+ +G      ++ + ++S++I+   +CALG  A  P+   +K FR
Sbjct: 503 LDRISRGEGTMESLEEIEDLSQHIKNSALCALGQTAPNPVLSTLKFFR 550


>gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
          Length = 626

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 157/393 (39%), Positives = 229/393 (58%), Gaps = 5/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D ++RG ++++ K L     + II  VKASGLRGRGG GF TG+KW F  K   D  
Sbjct: 160 SIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGGGFPTGLKWEFTRKAQGDI- 218

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            ++V N DE +PG   +R ++  +PH ++EG +IA +A+GA   + Y+R E+    +  +
Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGAQKGYAYIRAEYPFAVKMFK 278

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+++    GLLG N    G+  D+ V  GAGA++CGEETALL S+EGK+G PR KPPFP
Sbjct: 279 KAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETALLASIEGKRGMPRPKPPFP 338

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNVE+ A +P ILR G   Y   G EN+ GTK+FS++G +     +E 
Sbjct: 339 AQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSPGTKMFSVAGPLKATGIIEV 398

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++I   CGG   G +   AV  GG S  CL +       +DYD LK+  + +G
Sbjct: 399 EFGTTLRDIIYNICGGFVEG-EEFKAVQIGGPSGACL-SEDFIDMPLDYDTLKKADAMVG 456

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++V+ + T +++       F K ESCG+C PCREGT     ++E+   G A   ++ 
Sbjct: 457 SGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTHGKATYEDLK 516

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  +SK I+  ++C LG  A  PI   +K FR
Sbjct: 517 ALEHLSKTIKTASLCGLGKTAPNPILSTLKLFR 549


>gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Clostridium thermocellum ATCC 27405]
 gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 597

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 241/414 (58%), Gaps = 10/414 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  + K+L E   + +++ +K SGLRGRGG 
Sbjct: 110 FFAKQQRIALRNCGVINPENIDEYIAFDGYKALAKVLTEMTPEQVVDVIKRSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  +D+  Y+  NADE +PG   DR ++  +PH++IE   IA +AIGA
Sbjct: 170 GFPTGLKWEFAMKQDADQ-KYVCCNADEGDPGAFMDRSVLEGDPHSVIEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEE 175
           +  ++YVR E+    + L  A+ +    GLLG N   +   +DVDI    GAGA++CGEE
Sbjct: 229 NQGYVYVRAEYPIAVKRLGIAIQQAREYGLLGKNIFGTDFSFDVDI--RLGAGAFVCGEE 286

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+ +G  W++  G E 
Sbjct: 287 TALMTSIEGHRGEPRPRPPFPAVKGLWQKPTLLNNVETYANIPQIILKGPEWFASIGTEK 346

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           ++GTK+F++ G +N    VE  M  T  E+I    GGI  G     A   GG S  C+PA
Sbjct: 347 SKGTKVFAVGGKINNTGLVEIPMGTTLREVIYDIGGGIPNG-KKFKAAQTGGPSGGCIPA 405

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +   I DYD L ++GS +G+  +I+MD  T ++        F   ESCG+C PCR GT
Sbjct: 406 SHIDTPI-DYDSLTQLGSMMGSGGLIIMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGT 464

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             M  ++ER+ +G  ++ +I+ L  ++KNI+   +C LG  A  PI   ++ FR
Sbjct: 465 KRMYEILERITEGKGEEGDIEKLEMLAKNIKASALCGLGQTAPNPILSTLRYFR 518


>gi|257058013|ref|YP_003135901.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
 gi|256588179|gb|ACU99065.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
          Length = 535

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 150/406 (36%), Positives = 248/406 (61%), Gaps = 9/406 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +S+ + +SRG +  + ++L E   + +I EV  SGLRGRGG G+ TG+KW
Sbjct: 125 VLENSGQIDPESIEEYISRGGYQQLHQVLLEMTPNKVIEEVTKSGLRGRGGGGYPTGVKW 184

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           + + K+ + +  Y++ NADE +PG   DR I+  +PH ++EG  IA +A+GA+  +IY+R
Sbjct: 185 ATVAKMPTQQ-KYVICNADEGDPGAFMDRAILESDPHRVLEGMAIAGYAVGANHGYIYIR 243

Query: 127 GEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
            E+    + L+ A+ +    GL+G    +S   + +DI V  GAGA++CGEETAL+ S+E
Sbjct: 244 AEYPLAIQRLEKAIQQAKKYGLMGVQIFDSPFDFKIDIRV--GAGAFVCGEETALMASVE 301

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+G P  +PP+PA  GL+G PT +NNVE+ A +  I+R G +WY+  G E ++GTK+F+
Sbjct: 302 GKRGTPHPRPPYPAESGLWGHPTLINNVETYANIVPIIREGGNWYASIGTEKSKGTKVFA 361

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           ++G V     +E  M  T  E++E+  GG+  G + + AV  GG S  C+P   +    +
Sbjct: 362 LTGKVKNIGLIEVPMGTTIREIVEEIGGGVSDG-EKVKAVQTGGPSGGCIPE-YLFDTPV 419

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           +YD L+++G+ +G+  +IVMD ST +++       F + ESCG+C PCR GT  +  ++ 
Sbjct: 420 EYDSLQKLGTIMGSGGMIVMDESTSMVEISRFYMEFCREESCGKCVPCRTGTVQLYNLLT 479

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +LV+G A  R++  L  + + ++  ++C LG  A  P+   +  FR
Sbjct: 480 KLVEGQANNRDLAQLEALCQMVKETSLCGLGMTAPNPVLSTLHYFR 525


>gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
 gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
          Length = 597

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 160/409 (39%), Positives = 243/409 (59%), Gaps = 8/409 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +   ++ + + R  ++ + K L E  R+ +I EVK SGLRGRGG GF T
Sbjct: 115 QHRIALENCGYINPDNIEEYIVRHGYEALGKALTEMTREQVIEEVKTSGLRGRGGGGFPT 174

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSF  +   D+  Y++ NADE +PG   DR I+  +PH +IEG +I ++AIGA   +
Sbjct: 175 GLKWSFCARAQGDK-KYVICNADEGDPGAFMDRSILEGDPHCVIEGMMIGAYAIGADEGY 233

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLE 180
           IY R E+    + L+ A+++  A GLLG N  +G D   IVH   GAGA++CGEETAL+ 
Sbjct: 234 IYCRAEYPLAIQRLKTAIEKAEAYGLLGKNI-MGTDFSFIVHIKEGAGAFVCGEETALMA 292

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G PR +PPFPAN GL+  P+ +NNVE+ A +P I+  G   Y+  G E ++GTK
Sbjct: 293 SIEGQRGMPRPRPPFPANKGLWDKPSNINNVETWANIPYIILHGGDHYASMGTEKSKGTK 352

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G V +   VE  M IT  E+I    GGI        AV  GG S  CL    +  
Sbjct: 353 VFALTGKVKHTGLVEVPMGITLREIIFDIGGGILND-KKFKAVQIGGPSGGCLTEEHLDL 411

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +  Y+ L E+G+ +G+  ++VMD    ++        F + ESCG+CTPCREGT  M+ 
Sbjct: 412 PV-SYESLAEVGAIMGSGGMVVMDEENCMVDVAKFFLEFTQRESCGKCTPCREGTKQMLL 470

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ ++ +G     ++D L++++  ++  ++C LG  A  PI   ++ FR
Sbjct: 471 LLNKISEGKGTMEDLDTLHDLAVMVKEMSLCGLGQTAPNPILTTLRYFR 519


>gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 624

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 165/421 (39%), Positives = 248/421 (58%), Gaps = 7/421 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q R+  +  G +   S+++ ++ G +   +K L +  +D II E+  S LRGRGG GF  
Sbjct: 142 QTRLVLDHCGHIDSTSINEYLAIGGYSAFEKALFDMTQDEIITEISESNLRGRGGGGFPA 201

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KWS + +   ++  Y+V N DE +PG   DR IM  +PH ++EG +IA  A GA   +
Sbjct: 202 GRKWSQVKRQNVEQ-KYVVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAGLACGASEGY 260

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+      L+ A+ +    GLLG N    G++ ++ ++ GAGA++CGE +AL  S
Sbjct: 261 IYVRAEYPMAVSRLKTAIKQASECGLLGENILGRGFNFNLHINRGAGAFVCGEGSALTAS 320

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G PR+KPP     GL+  PT +NNVE+ A VP I+  GA+WY   G EN+ GTK 
Sbjct: 321 IEGKRGMPRVKPPRTVEHGLFDKPTVLNNVETYANVPLIINNGAAWYKAIGPENSPGTKA 380

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G++     +E  M  T  E+I    GG+RG  D   AV  GG S  CL        
Sbjct: 381 FALTGNIENTGLIEVPMGTTLREVIFDIGGGMRGNAD-FKAVQIGGPSGGCLST-DDLDL 438

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+D L+E G+ +G+  ++VMD +T +++       F ++ESCG+C PCREGT  M+ +
Sbjct: 439 PLDFDSLQEAGAMIGSGGMVVMDSNTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEI 498

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +ER+V+G  +  +I+LL E++  I    +C LG AAA+P+   IKNFR   E  I +  R
Sbjct: 499 LERIVEGKGKDGDIELLLELADTISATALCGLGKAAAFPVVSTIKNFREEYEAHIRE-KR 557

Query: 422 C 422
           C
Sbjct: 558 C 558


>gi|307153309|ref|YP_003888693.1| NADH dehydrogenase [Cyanothece sp. PCC 7822]
 gi|306983537|gb|ADN15418.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822]
          Length = 546

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 145/379 (38%), Positives = 233/379 (61%), Gaps = 9/379 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++ E+  SGLRGRGG G+ TG+KW+ + K+   +  Y++ N DE +PG   DR ++  +P
Sbjct: 156 VVEEITKSGLRGRGGGGYPTGLKWATVAKM-PGKQKYVICNGDEGDPGAFMDRSVLESDP 214

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDV 159
           H ++EG  IA++A+GA   +IYVR E+    + L+ A+ +    G+LGS    S   + V
Sbjct: 215 HLVLEGMAIAAYAVGADHGYIYVRAEYPLAIKRLEKAIQQAKKYGILGSQIFESHFDFKV 274

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI +  GAGA++CGEETAL+ S+EGK+G PR +PP+PA +GL+ CPT +NNVE+ A +  
Sbjct: 275 DIRI--GAGAFVCGEETALIHSIEGKRGTPRTRPPYPAELGLWECPTLINNVETYANIAP 332

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+R G +WY+  G E ++GTK+F+++G +     +E  M IT  E++E+  GGI  G   
Sbjct: 333 IIREGGNWYASIGTETSKGTKIFALTGKIRNNGLIEVPMGITLREIVEEMGGGIVDG--E 390

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           + AV  GG S  C+PA  +   + DY+ L ++GS +G+  ++VMD +T +++       F
Sbjct: 391 VKAVQTGGPSGGCIPADLLDTPV-DYNSLGKLGSMMGSGGMVVMDENTSMVEVAKFYMEF 449

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
            + ESCG+C PCR GT  M  ++ +LV   A K +++ L  +   ++  ++C LG +A  
Sbjct: 450 CQEESCGKCVPCRAGTVQMYEILNKLVNRQATKTDLEKLEALCLVVKETSLCGLGQSAPN 509

Query: 400 PIQGLIKNFRPLIEERIDQ 418
           PI   ++ FR   E  + +
Sbjct: 510 PILSTLRYFRAEYEALLQE 528


>gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 597

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 158/401 (39%), Positives = 230/401 (57%), Gaps = 6/401 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D ++RG ++ + + L+   D II EV+ SGLRG+GGAGF TG KW          P 
Sbjct: 127 SLDDYIARGGYEGLKRALKMTPDEIITEVEKSGLRGKGGAGFPTGRKWRTAAGY-DVFPK 185

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V N DE +PG   D   M   PH +IEG +I + AIGA    +Y+R E+   R+ +Q 
Sbjct: 186 YIVCNGDEGDPGAFMDGSTMEGSPHAVIEGMIIGALAIGAEEGVLYIRDEYALARDHIQH 245

Query: 139 AVDECYASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+D+ YA+G+LG  S LG D  +D+ +  G GA++CGE TAL+ S+EG+ G+PR K    
Sbjct: 246 AIDDAYAAGILG-ESILGTDHKLDLSIVRGGGAFVCGESTALMASIEGRVGEPRAKYIRS 304

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+  PT +NNVES+A +PTILR G   Y+  G +N++GTK+F++ G V +   VE 
Sbjct: 305 VQRGLFDNPTVLNNVESLASIPTILRDGGEKYAEIGTDNSKGTKVFAMVGKVKHTGLVEV 364

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  T   LI    GG   G     A+  GG S  C+P  ++    +D+D L E G+ +G
Sbjct: 365 PMGTTLRTLIYDI-GGGIIGDRPFKAIQTGGPSGGCIPE-ELLDLPVDFDTLVEYGAMMG 422

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  +IVMD  + +++       F   ESCG+CTPCREG   M  ++  + +G  +  +I+
Sbjct: 423 SGGMIVMDDRSCMVEVARYYVDFLCEESCGKCTPCREGLRQMRAILTDICEGRGKPGDIE 482

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           LL  +   ++  ++CALG  A  P+   IK FR   E  ID
Sbjct: 483 LLERIGHTMQDASLCALGRTAPNPVLTTIKFFRDEYEAHID 523


>gi|320104198|ref|YP_004179789.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Isosphaera pallida ATCC 43644]
 gi|319751480|gb|ADV63240.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Isosphaera pallida ATCC 43644]
          Length = 581

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 217/369 (58%), Gaps = 17/369 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ ++N V+ +GLRG GGAGF +G+KW  + K     P  + +NADE EPGT KDR  + 
Sbjct: 227 REEVVNRVETAGLRGMGGAGFKSGLKWRLVRK--QPAPRLMAINADEGEPGTFKDRHHLE 284

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            +PH  +EG +IA++A+ A   +IY+R E+   R+ L   ++    +GL           
Sbjct: 285 LDPHRFLEGMLIAAWAVEAEACYIYLRDEYPHLRKVLLREIERVARAGL-------SPHC 337

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I++  GAGAYICGEE+A+LESLEGK+G PR KPP+P  VGL+G PT ++NVE++  +  
Sbjct: 338 RIVLRRGAGAYICGEESAMLESLEGKRGYPRHKPPYPVEVGLFGRPTLIHNVETVYWLRD 397

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL RG  W++  GR    G + FS+SG V  P        IT  ELI+++CGG+  G   
Sbjct: 398 ILERGPDWFARHGRRGRTGLRSFSVSGRVAEPGVKLAPAGITARELIDEYCGGMAPG-HT 456

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA ++    +D+  L   G  +G+AAV+V      +   +  L  F
Sbjct: 457 LKAYLPGGASGGLLPA-RLADEPLDFGTLDPYGCFIGSAAVVVFSEQDSLRAVVRNLLKF 515

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           ++HESCGQCTPCR GT  ++++ +          +  LL E+S+ +   +IC LG AA  
Sbjct: 516 FEHESCGQCTPCRVGTEKLVQLTD------PPGWDRPLLLELSETMRQASICGLGQAAPN 569

Query: 400 PIQGLIKNF 408
           P+  L++ F
Sbjct: 570 PLLSLLRFF 578


>gi|156741350|ref|YP_001431479.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
 gi|156232678|gb|ABU57461.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
          Length = 532

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 232/368 (63%), Gaps = 5/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ V  SGLRGRGGAG+ TG+KW+ + K   DR  Y+V NADE +PG   DR I+  +P
Sbjct: 155 VIDVVTRSGLRGRGGAGYPTGLKWATVAKSHGDR-KYVVCNADEGDPGAFMDRSIIESDP 213

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H ++EG  IA++A+GA   ++YVR E+    + LQ A+ +    GLLG+     G+   I
Sbjct: 214 HKILEGMAIAAYAVGADQGYVYVRAEYPLAIQRLQRAIAQARRLGLLGAQIFDAGFTFRI 273

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETAL+ S+EG++GQPR +PP+PA  GL+G PT +NNVE+ A +P I+
Sbjct: 274 DIRVGAGAFVCGEETALMASIEGRRGQPRPRPPYPAESGLWGRPTLINNVETFANIPPII 333

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R GA W++  G E+++GTK+F+++G + +   +E  M +T  +++E+  GG+  G   + 
Sbjct: 334 RNGAEWFAAIGAEHSKGTKVFALTGKIRHTGLIEVPMGVTLRQIVEEMGGGVPEG--RVK 391

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  C+PA  +   + DY+ L+ +GS +G+  ++VMD +T+++        F K
Sbjct: 392 AVQTGGPSGGCIPAALLDTPV-DYESLQRVGSIMGSGGMVVMDDATNMVDVAHFYMEFCK 450

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  M+ ++  +  G A   ++  L ++   ++  ++C LG +A  P+
Sbjct: 451 DESCGKCIPCRAGTAQMLHMLNLIRSGQATAADLARLEQLCIMVKETSLCGLGQSAPNPV 510

Query: 402 QGLIKNFR 409
              +K FR
Sbjct: 511 LSTMKYFR 518


>gi|51244535|ref|YP_064419.1| NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea
           psychrophila LSv54]
 gi|50875572|emb|CAG35412.1| probable NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea
           psychrophila LSv54]
          Length = 634

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 232/416 (55%), Gaps = 8/416 (1%)

Query: 5   QDRIFTNLYGLQGKS-LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q RI    +G    + +   +    +  ++K L++G D ++ E+K S LRGRGG GF   
Sbjct: 143 QKRILFASFGFTDPTNIEHYLVHDGYLALEKSLQEGPDMVLTEIKKSALRGRGGGGFPAA 202

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KW    K  +  P Y+V NADE +PG   DR ++  +PH ++EG  IA   IG+   +I
Sbjct: 203 RKWEAGRKA-TGHPKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAIAGLTIGSEKGYI 261

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLES 181
           YVR E+      LQ A+D+     LLG+N  LG D   DI +  GAGA++CGE TAL +S
Sbjct: 262 YVRAEYPLAIARLQNAIDQAKEKNLLGANI-LGTDFSFDIELFQGAGAFVCGESTALTQS 320

Query: 182 LEGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           ++G +G P+  P P   + GL+  PT +NNV++ A VP I+  G   ++  G E ++GT 
Sbjct: 321 IQGYRGMPKASPRPRTTDEGLFDKPTLLNNVKTFAYVPKIINSGGESFAAIGTEKSKGTA 380

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G V +   +E  M  T  E++ +  GG+ G      A+  GG S  CLPA  +  
Sbjct: 381 VFALTGMVKHCGLIEVPMGTTLREIVFELGGGMVG-ESPFKAIQSGGPSGGCLPAHTLDT 439

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            + DYD L   G+ +G+  ++VMD ST ++        F + ESCGQCT C+ GT  M+ 
Sbjct: 440 PV-DYDSLVSAGAMMGSGGLVVMDESTCMVDIARYFLDFTQKESCGQCTLCKLGTKQMLN 498

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++E +V G  ++ +I+LL EV + +   ++C LG +AA P+   IK FR   E  I
Sbjct: 499 ILEDIVAGRGKEGDIELLLEVGEAVNAGSLCGLGKSAANPVLTTIKYFRDEYEAHI 554


>gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
 gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
          Length = 626

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 157/419 (37%), Positives = 242/419 (57%), Gaps = 8/419 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q R+  N  G +  +S+ + ++ G +    K L +   + IINE+  + LRGRGG GF T
Sbjct: 143 QTRVALNNCGHINAESIEEYLAEGGYSATTKALFDMTSEEIINEMSEAHLRGRGGGGFPT 202

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW  + K  ++   Y+V N DE +PG   DR +M   PH +IEG +IA  A  AH  +
Sbjct: 203 GKKWDQVLKQ-TESEKYIVCNGDEGDPGAFMDRSMMEGNPHGVIEGMIIAGIATKAHNGY 261

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    + L+ A+++    GLLG N    G+D  I ++ GAGA++CGE +AL  S
Sbjct: 262 IYVRAEYPLAVKRLRIAIEQAMEKGLLGDNILNSGFDFHIQINQGAGAFVCGEGSALTAS 321

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG +G PR+KPP     GL+G PT +NNVE+   V  I+ +G  WY   G ENN GTK 
Sbjct: 322 IEGNRGMPRVKPPRTVEQGLFGKPTVLNNVETFCNVSPIINKGVHWYKTMGTENNYGTKA 381

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR-G 300
           F+++G+VN    +E  M  T  ++I    GG++GG     AV  GG S  CL   +    
Sbjct: 382 FALTGNVNNTGLIEVPMGTTLRKIIFDIGGGVKGG--EFKAVQIGGPSGGCLCLRENHLD 439

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D LK++G+ +G+  ++VM+    +++       F ++ESCG+C PCREGT  M+ 
Sbjct: 440 LTLDFDSLKKVGAMIGSGGLVVMNDKNCMVEMARFFMNFTQNESCGKCIPCREGTRRMLE 499

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQ 418
           ++  +V+G     +ID L E+++ I    +C LG +AA+P++  ++ FR   IE  +D+
Sbjct: 500 ILNDIVEGKGTLDDIDTLEELAETISDTALCGLGKSAAFPVRSTLRYFRDEYIEHVVDK 558


>gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402
           065]
          Length = 631

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 157/383 (40%), Positives = 225/383 (58%), Gaps = 5/383 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +  SGLRGRGG GFSTG KWSF     SD   Y++ NADE +PG   DR I+  
Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDV 159
           +PH++IE   IA +AIGA    IY+R E+      L+ A+D+    GLLG N    G++ 
Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNF 306

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P 
Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ RGA WY   G E + GTK+F+++G +N    VE  M  T  E+I    GGI+ G   
Sbjct: 367 IINRGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++        F
Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR G   ++  + ++  G   + +++ L E+S  I+  ++C LG  A  
Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544

Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422
           P+   ++ F    E  +D+  RC
Sbjct: 545 PVLSTMRYFMDEYEAHVDE-KRC 566


>gi|326201302|ref|ZP_08191174.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325988870|gb|EGD49694.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 623

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 242/421 (57%), Gaps = 9/421 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +S ++ +++G +  + K+L +     +   +  S LRGRGG G+  G KW
Sbjct: 145 VLKNCGSINAESFAEYVAKGGYQALGKVLFDMEPQEVCQSILDSNLRGRGGGGYPAGRKW 204

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             + K  S +  Y+V N DE +PG   DR IM  +PH +IEG  IA +A  +   +IYVR
Sbjct: 205 QQVLKQDS-KIKYVVCNGDEGDPGAFMDRSIMEGDPHGVIEGMTIAGYATKSTSGYIYVR 263

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    E L+ A+++    G+LG N    G+  DI ++ GAGA++CGE +AL  S+EG+
Sbjct: 264 AEYPLAVERLRIAIEDARKHGMLGENILNSGFSFDININKGAGAFVCGEGSALTASIEGE 323

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR+KPP     GL+  PT +NNVE+ A VP+I+  G+ WY G G EN+ GTK F+I+
Sbjct: 324 RGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPSIIINGSEWYKGIGPENSPGTKAFAIT 383

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G+VN    +E  M  T  E+I    GGI+       AV  GG S  CL    +    +D+
Sbjct: 384 GNVNNTGLIEVPMGTTLREVIFDIGGGIKDN-KKFKAVQIGGPSGGCLTEEHLE-LPLDF 441

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D LK++G+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  M+ ++E++
Sbjct: 442 DSLKKVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILEKI 501

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERID---QYHR 421
           V G   K ++DLL E++  I    +C LG +AA P+   +K FR   +E  ID   + H 
Sbjct: 502 VNGKGTKEDLDLLEELADTISSTALCGLGKSAASPVVSTLKYFRDEYLEHVIDKKCKTHT 561

Query: 422 C 422
           C
Sbjct: 562 C 562


>gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
          Length = 623

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 235/420 (55%), Gaps = 8/420 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ + ++ G +  + K L E   + +I+EV  SGLRGRGGA
Sbjct: 136 FLKLQTRIVLENCGNIDAESIDEYIAIGGFSALSKALFEMTPETVIDEVDKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW  +     ++  Y+V N DE +PG   D  +M  +P+ +IEG  IA++A+GA
Sbjct: 196 GFPAGKKWKQVAGQ-PEKTRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176
              +IYVR E+      L+ A+ +    GLLG +  LG D    +H   GAGA++CGE +
Sbjct: 255 QEGYIYVRAEYPLSVARLKKAMRQAEEYGLLGDHI-LGTDFSFHLHINRGAGAFVCGEGS 313

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL  S+EG +G PR+KPP     GL+  PT +NNVE+ A VP I+  GA W+   G E +
Sbjct: 314 ALTASIEGNRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILEGADWFRTIGTEKS 373

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK FS++G +     +E  M  T   +I    GG++ G      V  GG S  CL   
Sbjct: 374 PGTKTFSLTGSIETTGLIEVPMGTTLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLTEE 432

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D+D +K+  + +G+  ++VMD +T +++       F + ESCG+C PCREGT 
Sbjct: 433 HLDQP-LDFDAVKKFDAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTK 491

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ER+V+G  + +++D L E+++ +    +C LG +A  P+   +K FR   EE I
Sbjct: 492 RMLEILERIVEGKGELKDLDQLEELAEMVRSMALCGLGKSAPLPVISTLKRFREEYEEHI 551


>gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp.
           Marseille]
 gi|151280375|gb|ABR88785.1| formate dehydrogenase beta subunit [Janthinobacterium sp.
           Marseille]
          Length = 567

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 218/372 (58%), Gaps = 16/372 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E+  + +I  ++ SGLRG GGAGF +G KW  +       P  + VN DE EPGT KDR 
Sbjct: 207 ERDVESVIKTMEDSGLRGLGGAGFPSGRKWRIVRG--EKGPRLMAVNIDEGEPGTFKDRV 264

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            +  +PH  +EG +IA++A+     +IY+R E+   R  L+A +++      L +N  + 
Sbjct: 265 YLEKDPHRFLEGMLIAAWAVDIQTIYIYLRDEYHGCRTMLEAELEK------LKANPPIA 318

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT  +N E++  
Sbjct: 319 NMPEIFLRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLYW 378

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V  IL +G  W++  GR   +G + +S+SG V  P        IT  ELI++HCGG+  G
Sbjct: 379 VRDILEKGGEWFTSHGRNGRKGLRSYSVSGRVKNPGVKLAPAGITIQELIDEHCGGMLEG 438

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                  +PGG+S   LPA  M    +D+D L+  G  +G+AAVIV+      ++A   +
Sbjct: 439 -QTFYGYLPGGASGGILPA-SMNAIPLDFDTLQPYGCFIGSAAVIVLSDKDTAVQAARNM 496

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
             F+KHESCGQCTPCR GT     ++++       K ++ LL ++S+ +   +IC LG A
Sbjct: 497 MDFFKHESCGQCTPCRVGTAKAAELIKK------PKWDVGLLEDLSQVMRDSSICGLGQA 550

Query: 397 AAWPIQGLIKNF 408
           A  PI  ++K F
Sbjct: 551 APNPIDCVVKYF 562


>gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
 gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
          Length = 626

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 234/410 (57%), Gaps = 9/410 (2%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           N+  +Q +SL++ +    +  + K I +  +  II E+K SGLRGRGGAGF TG KW   
Sbjct: 152 NVEKIQLESLNEYIGADGYQALHKAIFDLDQKEIIEEMKKSGLRGRGGAGFPTGRKWESA 211

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            KV  +   Y++ NADE +PG   DR I+  +PH+++EG  I   AIGA+  FIYVR E+
Sbjct: 212 YKV-ENNQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGANQGFIYVRAEY 270

Query: 130 IRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
               + L+ A+ +     LLG+N   S   +D+++    G+GA++CGE TAL+ES+EG++
Sbjct: 271 PIAVKRLRIAIQQAKEMNLLGNNIFGSDFSFDIEL--RLGSGAFVCGEGTALMESIEGRR 328

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PR K    A  GL+  PT +NNVE+ A VP I+ +GA W++ +G E + GTK+F++ G
Sbjct: 329 GMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYKGADWFTSYGTEGSPGTKVFALGG 388

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V     VE  M  T  E+I    GGI+ G     AV  GG S  C+P  +     +D++
Sbjct: 389 KVVNTGLVEVPMGSTLREIIFDIGGGIKDG-KKFKAVQTGGPSGGCIPE-EFLDTPVDFE 446

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L ++GS +G+  +IVMD    ++        F   ESCG+C PCREGT  M+ ++E++ 
Sbjct: 447 SLAKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKRMLEILEKIT 506

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            G  +  +I+ L ++   I   ++C LG  A  P+   +K FR   E  I
Sbjct: 507 SGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHI 556


>gi|92113124|ref|YP_573052.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043]
 gi|91796214|gb|ABE58353.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 595

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 217/367 (59%), Gaps = 17/367 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  ++ + LRG GGAGF T  KW+F+ +     P Y  +NADE EPGT KDR  +   P
Sbjct: 234 LMQALETANLRGLGGAGFPTFKKWTFVRQEAG--PRYCAINADEGEPGTFKDRVYLERSP 291

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H  +EG +++++A+ A   +IY+R E+      L+ A+ E    GL+  +        I+
Sbjct: 292 HRFLEGALVSAWAVEAEALYIYLRDEYPGLHRVLREAIAELEDEGLVVPDY-------IV 344

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +  GAGAYICGEE+A++ESLEGK G+PR +PPF A  GL+  PT VNNVE++  +P I +
Sbjct: 345 LRRGAGAYICGEESAMIESLEGKPGKPRHRPPFVAQRGLFDRPTLVNNVETVYWIPLIWQ 404

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
           RGA  ++  GR    G + FS+SG V +P        IT +ELIE++CGG+  G   L+A
Sbjct: 405 RGAEAFARQGRHGRVGLRSFSVSGRVKHPGVHLAPAGITLEELIEEYCGGMAEG-HRLVA 463

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
            +PGG+S   LPA +     +D+D L+  G  +G+AAVIV+    D+      L  F+  
Sbjct: 464 YLPGGASGGILPASKA-NVPLDFDTLQAYGCFIGSAAVIVLSDQDDLRAVATNLLAFFAD 522

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ESCGQCTPCR GT  M+ ++E        + +   L  +S+ +   +IC LG AA  P+ 
Sbjct: 523 ESCGQCTPCRVGTEKMLTLLE------GDEWDAATLTRLSQVMMDASICGLGQAAPNPVL 576

Query: 403 GLIKNFR 409
           GL+K+FR
Sbjct: 577 GLLKDFR 583


>gi|158340818|ref|YP_001521986.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F,
           putative [Acaryochloris marina MBIC11017]
 gi|158311059|gb|ABW32672.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F,
           putative [Acaryochloris marina MBIC11017]
          Length = 551

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/406 (35%), Positives = 245/406 (60%), Gaps = 10/406 (2%)

Query: 8   IFTNLYGLQGKSLSDSMS-RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  K + D M+ +G+      + +     +I+++  SGLRGRGG G+ TG+KW
Sbjct: 134 VLENSGHIDPKEIKDYMAQKGYLALTQALYDMTPSDVIDQITQSGLRGRGGGGYPTGLKW 193

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S + K+   +  Y++ N DE +PG   DR ++  +PH ++EG  IA++A+GA+  +IY+R
Sbjct: 194 STVAKMPPGQ-KYVICNGDEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGANQGYIYIR 252

Query: 127 GEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           GE+      L+ A+ +    GLLGS    S   + +DI +  GAGA++CGEETAL+ S+E
Sbjct: 253 GEYPLAINHLETALRQARKQGLLGSQIFESPFDFRIDIRI--GAGAFVCGEETALMASIE 310

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+G P  +PP+PA  GL+GCPT +NNVE+ A +  I+R GA W+ G G + ++GTK+FS
Sbjct: 311 GKRGLPHPRPPYPAESGLWGCPTLINNVETFANIAPIIRNGAEWFVGIGTDKSKGTKVFS 370

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           ++G +     +E  M  +  +++E+  GG+  G  +  AV  GG S  C+PA      + 
Sbjct: 371 LAGKIQNTGLIEVPMGTSLRQIVEQMGGGVLDG--SAKAVQTGGPSGGCIPAHAFDTPV- 427

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DY+ L  +GS +G+  +IVMD++T+++        F   ESCG+C PCR GT  + +++ 
Sbjct: 428 DYESLTRLGSIMGSGGMIVMDQATNMVDVARFFMEFCMEESCGKCVPCRAGTVQLYQLLT 487

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++  G A+K +++ L ++ + ++  ++C LG +A  PI   ++ F+
Sbjct: 488 KICDGKARKEDLESLNQLCEMVKDTSLCGLGKSAPNPILSTLRFFK 533


>gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii DSM 519]
 gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii]
          Length = 625

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 158/387 (40%), Positives = 236/387 (60%), Gaps = 8/387 (2%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           I EK    +I+E+K SGLRGRGG GFSTG+KW F  K  SD   Y+V NADE +PG   D
Sbjct: 175 ITEKTPQDVIDEIKLSGLRGRGGGGFSTGLKWEFTKKPVSDI-KYIVCNADEGDPGAFMD 233

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R I+  +PH++IE   +A +++GA   F+Y+R E+    + L+ A++E    GLLG N  
Sbjct: 234 RSILEGDPHSIIEAMAVAGYSVGASKGFVYIRAEYPLAIKRLRHAINEAREHGLLGDNIM 293

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              +  DI + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  GL+G PT VNNVE+
Sbjct: 294 GTSFSFDIEIKYGAGAFVCGEETALIHSIEGQRGEPTTKPPFPAESGLWGKPTCVNNVET 353

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           +A VP IL  GASW++  G E ++GTK+F+++G +N    VE  M IT  E+I +  GGI
Sbjct: 354 LANVPAILLEGASWFNAIGSETSKGTKVFALAGKINNVGLVEVPMGITLREIIYEIGGGI 413

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
           + G +   AV  GG S  C+   Q+   I DY+ L  +GS +G+  +IVMD    ++   
Sbjct: 414 KDGKE-FKAVQTGGPSGGCITKDQLDVKI-DYESLGAIGSMMGSGGMIVMDEDNCMVDIA 471

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                F   ESCG+CTPCR G   +  ++ ++ +G     ++D + E+++ I+  ++C L
Sbjct: 472 KFYLEFTVEESCGKCTPCRVGNKRLHEMLTKISEGKGTMEDLDAMKELAQTIKDTSLCGL 531

Query: 394 GDAAAWPIQGLIKNF----RPLIEERI 416
           G  A  P+   +  F    R  ++++I
Sbjct: 532 GQTAPNPVLSTLNFFGDEYRAHVQDKI 558


>gi|300786459|ref|YP_003766750.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
 gi|299795973|gb|ADJ46348.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
          Length = 581

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 161/400 (40%), Positives = 221/400 (55%), Gaps = 16/400 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
            SL D  + G +  +   L  G+  +I EV  +GL GRGGA F TG KW+      +  P
Sbjct: 191 SSLDDYRATGGYAALRNALRMGQAAVIREVTDAGLLGRGGAAFPTGRKWAATAAQPAG-P 249

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
           HYLV NADESEPGT KDR ++  +P  L+E   IA+FAIGA   ++Y+RGE+ R    L+
Sbjct: 250 HYLVCNADESEPGTFKDRVLLEGDPFALVEAMTIAAFAIGARQGYVYLRGEYPRALRLLR 309

Query: 138 AAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A+D     G LG +     G+  DI +  GAGAYICGEETA+  S+EG +G+PR KPPF
Sbjct: 310 NALDVGRERGFLGVDVMGHAGFSFDIEIRRGAGAYICGEETAIFNSIEGFRGEPRTKPPF 369

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P   GL+G PT VNNVE++  VP IL  GA+ Y   G E + G KLF +SG+V  P   E
Sbjct: 370 PVEQGLFGKPTVVNNVETLVNVPLILTEGAAAYRSIGTEASAGPKLFCLSGNVERPGVYE 429

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEM 311
                T  EL+    GG+  G  +L AV+ GG++      G +R   +D    ++  +  
Sbjct: 430 VPFGATLRELL-ALAGGVPEG-RSLRAVLLGGAA-----GGFVRPDELDLPLTFEDARAA 482

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
            + LG+  V+V+D   D+   + R++ F++ ESCGQC PCR GT      + R++   A 
Sbjct: 483 KTTLGSGVVLVLDDLADLGGFLLRIAEFFRDESCGQCVPCRIGTVRQEEAIRRVLA--AG 540

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411
             E  LL EV   +   +IC LG  A   I+  I     L
Sbjct: 541 SEEQPLLREVGGVMRDSSICGLGQTAWNAIESAIDRLGAL 580


>gi|57234506|ref|YP_181467.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224954|gb|AAW40011.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 623

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 164/416 (39%), Positives = 244/416 (58%), Gaps = 11/416 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N   +   S+ D ++ G + ++ K +   + + I+ EV  SGLRGRGG GF TG KW
Sbjct: 144 VFGNNGNIDPTSIDDYLAVGGYKSLAKAISGLKPEEIVEEVIKSGLRGRGGGGFPTGWKW 203

Query: 67  SFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
               K C D      Y++ N DE +PG   DR +M   PH++IEG +I ++AIG+H A+I
Sbjct: 204 ----KSCRDAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGSHEAYI 259

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    +    A+ +    GLLG N    G+D+ I ++ G GA++CGE TAL+ SL
Sbjct: 260 YIRDEYPMAVKHALLAIKQAEDYGLLGENILGSGFDLKIHINRGGGAFVCGESTALMASL 319

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK G+PR K    +  GL+  PTT+NNVE+ A +P I+ +GA W++  G E ++GTK+F
Sbjct: 320 EGKVGEPRAKYVHTSEKGLHDKPTTLNNVETWANIPLIIEKGADWFNKIGTEGSKGTKIF 379

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+ G VN    +E  M IT  E++    GGI  G     A+  GG S  CLP   M    
Sbjct: 380 SLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPE-SMLDLP 437

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+D L + GS +G+ A+IVMD    +++       F + ESCG+C PCREG   M +++
Sbjct: 438 VDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKRMRQIL 497

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ER+ KG  ++ +I+LL ++S+ I+  ++CALG +A  P+   IK FR   E  I Q
Sbjct: 498 ERITKGEGEEGDIELLEQLSQAIQDASLCALGGSAPNPVLSTIKYFRDEYEAHIRQ 553


>gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
 gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
          Length = 631

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 156/383 (40%), Positives = 225/383 (58%), Gaps = 5/383 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +  SGLRGRGG GFSTG KWSF     SD   Y++ NADE +PG   DR I+  
Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDV 159
           +PH++IE   IA +AIGA    IY+R E+      L+ A+D+    GLLG N    G++ 
Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNF 306

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P 
Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ RGA WY   G E + GTK+F+++G +N    VE  M  T  E+I    GGI+ G   
Sbjct: 367 IINRGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++        F
Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR G   ++  + ++  G   + +++ L E+S  I+  ++C LG  A  
Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544

Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422
           P+   ++ F    +  +D+  RC
Sbjct: 545 PVLSTMRYFMDEYKAHVDE-KRC 566


>gi|169830327|ref|YP_001716309.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637171|gb|ACA58677.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 656

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/394 (37%), Positives = 223/394 (56%), Gaps = 5/394 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G+    D +     + +I+ V  SGLRGRGGAGF TG KW+   +     P Y+V N DE
Sbjct: 170 GYQALADVLTRYTPEEVIDAVTRSGLRGRGGAGFPTGRKWA-AARRAEGEPKYVVCNGDE 228

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR ++  +PH+++EG  IA++A+GA   +IYVR E+    E L+ A+ +    
Sbjct: 229 GDPGAFMDRSVLEGDPHSVLEGMTIAAYAVGAGHGYIYVRAEYPLAVERLKIAIAQARQH 288

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP-PFPANVGLYGC 204
            +LG +    G++ DI +  GAGA++CGE TAL+ SLEG +G P+  P P     G+ G 
Sbjct: 289 RVLGQDIMGTGFNFDIEIFRGAGAFVCGESTALVRSLEGFRGMPKAMPRPRTTEEGIGGK 348

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNV+S A VP I+ RG  W++  G E ++GT +F+++G       +E  M IT  E
Sbjct: 349 PTLLNNVKSFAYVPQIITRGPEWFASMGTETSKGTAVFALTGKAKNTGLIEVPMGITLRE 408

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           +I    GG   G +   AV  GG S  CLP  ++    +D+D L   GS +G+  ++VMD
Sbjct: 409 IIFNIGGGTSTGQE-FKAVQTGGPSGGCLPK-ELLDMPVDFDSLTSAGSMMGSGGMVVMD 466

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
           + T ++        F  +ESCGQCTPCR GT  M++++E + +G  +  ++ LL ++ K 
Sbjct: 467 QDTCMVDVARYFLEFTVNESCGQCTPCRVGTYQMLKILEDITQGRGKPTDLSLLEDIGKA 526

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           I   +IC LG  A  P+   ++ FR   E  I +
Sbjct: 527 IIAGSICGLGQTAPNPVLSTLRYFRSEYEAHIGE 560


>gi|281358699|ref|ZP_06245176.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281314825|gb|EFA98861.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 634

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 160/420 (38%), Positives = 241/420 (57%), Gaps = 11/420 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q R+      ++   + + ++RG +    K ILE   + +      SGLRGRGG GF TG
Sbjct: 147 QKRVVLANCRVEPSCVREYIARGGYFGARKAILEMKPEEVCQTAIDSGLRGRGGGGFPTG 206

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW F     +D+  Y++ N DE +PG   DR +M   PH++IEG +IA+ AIGA   ++
Sbjct: 207 LKWKFTLASQNDK-KYVICNGDEGDPGAFMDRSVMEGNPHSVIEGMMIAARAIGADEGYV 265

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLES 181
           YVR E+    E ++AAV +   +GLLG +   G D    + V  GAGA++CGEETAL+ S
Sbjct: 266 YVRAEYPLAVERMRAAVKDAEEAGLLGDHL-FGSDFSFKVTVMEGAGAFVCGEETALIAS 324

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G PR KPPFPA  GL+G PT +NNVE++A VP I   G   Y   G E + GTK 
Sbjct: 325 IEGKRGMPRPKPPFPAQSGLWGKPTVINNVETLASVPGIFLNGPEQYKAVGTEKSPGTKT 384

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-----WDNLLAVIPGGSSVPCLPAG 296
           F+++GHV     +E     T  E+I    GG+         ++  AV  GG S  CL   
Sbjct: 385 FALTGHVANTGLIEVPFGTTLREIIYNIGGGVTNNKGEVTTEDFKAVQIGGPSGGCLTP- 443

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            M    +D+D LK  G+ +G+  ++VM++ T I+K       F ++ESCG+C PCREGT 
Sbjct: 444 DMLDLPLDFDSLKSAGAMVGSGGLVVMNKETCIVKIARFFMQFTQNESCGKCVPCREGTK 503

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ +++ +++G A ++ ++LL E +K ++  ++CALG  A  P+   ++ FR   E  +
Sbjct: 504 QMLAMLDDIIEGRADRKTLELLEETAKAVQLGSLCALGKTAPNPVLSTLRFFREEYEAHV 563


>gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
 gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 154/396 (38%), Positives = 232/396 (58%), Gaps = 5/396 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           L  +++ + ++R  ++ + ++L   +   +++ VK SGLRGRGG GF TG+KW    K  
Sbjct: 126 LDPENVQEYIARDGYEALGRVLSTMKPADVVDTVKKSGLRGRGGGGFPTGLKWEIASKYG 185

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +D+  Y++ NADE +PG   DR I+  +PH+++E   I  +AIGA    +Y+R E+    
Sbjct: 186 ADQ-KYVICNADEGDPGAFMDRSILEGDPHSVVEAMAICGYAIGASKGMVYIRAEYPLAV 244

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E LQ A+      GLLG +    G+D DI + +GAGA++CGEETAL++SLEG +G+P  K
Sbjct: 245 ERLQKAIVAAREIGLLGKDILGTGFDFDIELRYGAGAFVCGEETALIQSLEGNRGEPTSK 304

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  G +G P+ VNNVE+ A VP I+ +GA W++  G E ++GTK+F+++G VN   
Sbjct: 305 PPFPAEKGFWGKPSNVNNVETFANVPPIILKGADWFASIGTEKSKGTKVFALAGKVNNVG 364

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            VE  M  T  E+I    GGIR G     AV  GG S  CL    +   I D+D L   G
Sbjct: 365 LVEVPMGTTLREVIYDIGGGIRDG-KAFKAVQTGGPSGGCLTQKHLDTPI-DFDNLIAAG 422

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S +G+  +IVMD    ++        F   ESCG+CTPCR G   M  ++E++ +G   +
Sbjct: 423 SMMGSGGMIVMDEDNCMVSVAKFYLEFTVEESCGKCTPCRVGNKRMHEILEKITQGKGTE 482

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +++  L E++  I+   +C LG  A  P+   + NF
Sbjct: 483 KDLARLRELALVIKDTALCGLGQTAPNPVLSTLDNF 518


>gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 632

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 156/403 (38%), Positives = 236/403 (58%), Gaps = 7/403 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ D M+RG + ++ K+L    R  II ++KA+GLRGRGG GF TG+KW        D 
Sbjct: 164 ESIEDYMARGGYTSLAKVLSGMDRKEIIEQIKAAGLRGRGGGGFPTGLKWEAAYNSKGDI 223

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V NADE +PG   +R ++  +PH+++EG +IA++ IGA   + Y+R E+    E  
Sbjct: 224 -KYVVCNADEGDPGAFMNRTLLERDPHSVLEGMIIAAYTIGAQKGYAYIRAEYPIAVEMF 282

Query: 137 QAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
             A+++    GLLG N  LG D   ++ V  GAGA++CGEETALL S+EGK+G PR +PP
Sbjct: 283 NKAIEDAKEYGLLGENI-LGTDFSFELYVKEGAGAFVCGEETALLASIEGKRGVPRPRPP 341

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GL+G PT +NNVES A VP I+R G   Y   G E + GTK+FS++G +     +
Sbjct: 342 FPAQSGLWGKPTLINNVESYANVPKIIRDGVENYRKRGVEKSPGTKMFSVTGPLKLTGII 401

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E     T   +++  CGG   G   + A+  GG S  CLP  ++    +DYD LK +G+ 
Sbjct: 402 EIQFGTTLRYILDNICGGTSNG-QKIKAIQIGGPSGACLPE-ELFDLPLDYDTLKSVGAM 459

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  ++ +     +++       F K ESCG+C PCREGT     ++E+  +G A   +
Sbjct: 460 VGSGGIVAITEDRCMVEVARFFLDFTKRESCGKCVPCREGTTQAYNILEKFTQGKATYED 519

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ L ++S+ I+  ++C LG  A  PI   +K F+    E I+
Sbjct: 520 LETLEQLSEIIKTASLCGLGKTAPNPIISTLKYFKNEYIEHIE 562


>gi|189219241|ref|YP_001939882.1| NAD-dependent formate dehydrogenase beta subunit [Methylacidiphilum
           infernorum V4]
 gi|161075751|gb|ABX56623.1| formate dehydrogenase beta subunit [Methylacidiphilum infernorum
           V4]
 gi|189186099|gb|ACD83284.1| NAD-dependent formate dehydrogenase beta subunit [Methylacidiphilum
           infernorum V4]
          Length = 522

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 156/411 (37%), Positives = 233/411 (56%), Gaps = 9/411 (2%)

Query: 2   LTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q R IF  +      SL   +  G +  + K +E G+  +I+EV  SGLRGRGGA F
Sbjct: 99  LKNQKRLIFERIGRNDPLSLDSYVECGGFIGLRKAIEWGQSKVIDEVYKSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW    +  S +  ++V NADE + GT  DR +M  +P  LIEG +IA FA+GA  
Sbjct: 159 PTGIKWKTTWQATSSQ-KFIVCNADEGDSGTFSDRMVMEGDPFLLIEGMMIAGFAVGADK 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177
            +IY+R E+    E L  A+  C ++GLLG     S   +D+++ +  GAGAY+CGEETA
Sbjct: 218 GYIYLRSEYPLAYEILNEAIFICKSAGLLGKRIFGSSFSFDLEVFL--GAGAYVCGEETA 275

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+SLEGK+G  R +PP PA  GL+G PT +NNV +++ VP IL  GA  Y+  G   ++
Sbjct: 276 LLDSLEGKRGMVRPRPPLPAVKGLWGKPTVINNVITLSSVPWILSHGAEAYASLGVNRSK 335

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT    +SG++ YP  VE    I+  ELI    GG R G   L A+  GG   P LP   
Sbjct: 336 GTLPVQLSGNLQYPGLVEIPFGISLKELIYGFGGGTRSG-RPLKAIQIGGPLGPYLP-DS 393

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L ++   +G   ++  D S ++         F   ESCG+CTPCR G+  
Sbjct: 394 LLDIPLDYEELSKIKGIVGHGGIVAFDDSANLAHMAHYAMEFCAEESCGKCTPCRIGSTR 453

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            M ++E+++ G   +RE++LL+++   +   ++C LG    +P+   ++ F
Sbjct: 454 GMELIEKIIMGKGSRRELELLFDLCDTMLNASLCGLGGMTPFPVLSALRYF 504


>gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
 gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
          Length = 624

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 154/366 (42%), Positives = 221/366 (60%), Gaps = 8/366 (2%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCS--DRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
           +K S LRGRGG G+  G KW    +V S  D   Y+V N DE +PG   DR +M  +PH+
Sbjct: 186 IKLSNLRGRGGGGYPAGSKWE---QVLSRPDEIKYVVCNGDEGDPGAFMDRSVMEGDPHS 242

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIV 163
           ++EG +IA FA  A   +IYVR E+    E L  A++     GLLG N    G+  DI V
Sbjct: 243 VLEGMLIAGFATKATQGYIYVRAEYPVAVERLNKAIEAARGVGLLGENILGSGFSFDIRV 302

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
           + GAGA++CGE +AL  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I++ 
Sbjct: 303 NRGAGAFVCGEGSALTASIEGKRGMPRVKPPRTTEHGLWNRPTVLNNVETFANVPRIVQN 362

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
           G  W+ G G EN+ GTK+F+ISG+VN    +E  M  T  E+I    GGIRGG     AV
Sbjct: 363 GGDWFRGIGPENSPGTKVFAISGNVNNTGLIEVPMGTTLREVIFDIGGGIRGG-KAFKAV 421

Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
             GG S  CL +  +    +D+D LK++G+ +G+  ++VMD  T +++       F ++E
Sbjct: 422 QIGGPSGGCLTSEHLD-LPLDFDSLKKVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNE 480

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403
           SCG+C PCREGT  M+ ++ R+V+G  +  ++D+L E++  I    +C LG +AA P+  
Sbjct: 481 SCGKCVPCREGTRRMLEILTRIVEGKGEMEDLDMLEELADTISNTALCGLGKSAANPVVS 540

Query: 404 LIKNFR 409
            +K FR
Sbjct: 541 TLKYFR 546


>gi|325291004|ref|YP_004267185.1| NADH dehydrogenase subunit F [Syntrophobotulus glycolicus DSM 8271]
 gi|324966405|gb|ADY57184.1| NADH dehydrogenase subunit F [Syntrophobotulus glycolicus DSM 8271]
          Length = 427

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 151/405 (37%), Positives = 230/405 (56%), Gaps = 6/405 (1%)

Query: 7   RIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           +I ++ +G ++  S+ + ++ G ++ + K + +     I E+K + L GRGGA + TG+K
Sbjct: 5   KILSSRFGKIKPDSVEEYVANGGYEGLKKAITQQHLDTIEEIKKANLFGRGGAAYPTGIK 64

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           W     +   +  Y+V NADE EPGT KDR+IM  +P  LIEG  I ++  G+   FIY 
Sbjct: 65  WEQAYAIPGTK--YIVCNADEGEPGTIKDREIMSRDPLMLIEGMTIGAYLFGSSEGFIYC 122

Query: 126 RGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGE+ + ++ L++A+    A+G LG N    G + DI V  GAGAY+CGE TAL ES+EG
Sbjct: 123 RGEYGKIQKLLRSAIANAKAAGYLGDNILGTGLNFDIKVVSGAGAYVCGENTALAESIEG 182

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K G+PR KPP+  N GL   PT +NNVE+ A +P I++ G   +  +G E + GTKL  +
Sbjct: 183 KTGRPRRKPPYLKNAGLNLKPTVLNNVETYACIPYIVKEGGEKFLSYGTEFSGGTKLMCL 242

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
            G V      E     T  ELI+ +CGG       L  V  GGSS  C P   +   I  
Sbjct: 243 IGDVKNRGVYEVPFGTTVRELID-NCGGGMADGKKLKFVHLGGSSGSCFPESMLDTKIC- 300

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           Y+ L++ G  LG+  V+V+     +++ +  +  F++ ESCG+CTPCREG   M+ ++E+
Sbjct: 301 YNDLRKAGISLGSGVVLVVSEDQSVVEYLKAVMEFFEEESCGKCTPCREGNQRMVEILEK 360

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           L +G     +I  L  +++ +   + C LG +A  P   LIK+F 
Sbjct: 361 LTEGKGTAEDIKRLKHLAQIMRDTSFCGLGQSAPVPALTLIKHFE 405


>gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8]
          Length = 626

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 156/393 (39%), Positives = 228/393 (58%), Gaps = 5/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D ++R  ++++ K L     + II  VKASGLRGRGG GF TG+KW F  K   D  
Sbjct: 160 SIEDYIARSGYESLVKALTSMTPEEIIETVKASGLRGRGGGGFPTGLKWEFTRKAQGDI- 218

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            ++V N DE +PG   +R ++  +PH ++EG +IA +A+GA   + Y+R E+    +  +
Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGAQKGYAYIRAEYPFAVKMFK 278

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+++    GLLG N    G+  D+ V  GAGA++CGEETALL S+EGK+G PR KPPFP
Sbjct: 279 KAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETALLASIEGKRGMPRPKPPFP 338

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNVE+ A +P ILR G   Y   G EN+ GTK+FS++G +     +E 
Sbjct: 339 AQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSPGTKMFSVAGPLKATGIIEV 398

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++I   CGG   G +   AV  GG S  CL +       +DYD LK+  + +G
Sbjct: 399 EFGTTLRDIIYNICGGFVEG-EEFKAVQIGGPSGACL-SEDFIDMPLDYDTLKKADAMVG 456

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++V+ + T +++       F K ESCG+C PCREGT     ++E+   G A   ++ 
Sbjct: 457 SGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQAYNILEKFTHGKATYEDLK 516

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  +SK I+  ++C LG  A  PI   +K FR
Sbjct: 517 TLEHLSKTIKTASLCGLGKTAPNPILSTLKLFR 549


>gi|299135120|ref|ZP_07028311.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
 gi|298590097|gb|EFI50301.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
          Length = 616

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 154/403 (38%), Positives = 227/403 (56%), Gaps = 9/403 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +S+ D ++ G +  + +  E G   +I+EVK S L GRGGA F  G+KW    K  +  P
Sbjct: 218 ESIDDYLATGGYAGLRRAFEMGPGKVISEVKDSRLMGRGGAAFPAGIKWESTAKQPAT-P 276

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV NADESEPGT KDR I+  +P  LIE   IA +AI A   +IY+RGE+ R    L 
Sbjct: 277 RYLVCNADESEPGTFKDRAILEGDPFALIESMTIAGYAISAERGYIYLRGEYPRAYRMLS 336

Query: 138 AAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+      G LG N    G+  ++ +  GAGAYICGEETA+  S+EG +G+PR KPPFP
Sbjct: 337 NAIARARGRGFLGDNVMGTGWSFELEIRRGAGAYICGEETAIFNSIEGYRGEPRSKPPFP 396

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+  PT VNNVE++  VP I++ G + Y+  G E + G KLF +SG++  P   E 
Sbjct: 397 FEAGLFNKPTVVNNVETLCNVPLIMQMGGAEYAKIGTEGSTGPKLFCVSGNLVRPGVYEV 456

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++I K  GG+  G   L AV+ GG++   + A ++    + ++G +   + LG
Sbjct: 457 PFGATLGDVI-KLAGGVPQG-RKLQAVLLGGAAGVFVRADELH-IPLTFEGARANNATLG 513

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT----GWMMRVMERLVKGIAQK 372
           +  V+  D + D+   + R++ F++ ESCGQC PCR GT      ++R+M       A++
Sbjct: 514 SGVVLAFDDTVDLPAILLRIASFFRDESCGQCVPCRVGTVRQEEALLRIMRNGRDTAAKE 573

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R + LL +V   ++  +IC LG AA   ++  I     L + R
Sbjct: 574 RNVGLLRDVGLVMKDSSICGLGQAAWNAVESAIDRLGVLEKSR 616


>gi|220909416|ref|YP_002484727.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425]
 gi|219866027|gb|ACL46366.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425]
          Length = 543

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 146/391 (37%), Positives = 238/391 (60%), Gaps = 6/391 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + + ++ G + ++ K+L E     ++ E+  SGLRGRGG G+ TG+KW+ + K+  D+  
Sbjct: 132 IEEYIAVGGYQSLHKVLYEMTPAEVVTEITRSGLRGRGGGGYPTGLKWATVAKMPGDQ-K 190

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ N DE +PG   DR ++  +PH ++EG  IA +A+GA+  FIYVR E+    + LQ 
Sbjct: 191 YVICNGDEGDPGAFMDRSVLESDPHLVLEGMAIAGYAMGANHGFIYVRAEYPLAIQRLQK 250

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ +    GLLGS      +D  I +  GAGA++CGEETAL+ S+EG +G PR +PP+PA
Sbjct: 251 AIQQAKKYGLLGSQIFDSHFDFKIEIRIGAGAFVCGEETALIASIEGGRGNPRPRPPYPA 310

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+ CPT +NNVE+ A +  I+R GA WY+  G E ++GTK+F+++G +     +E  
Sbjct: 311 QFGLWHCPTLINNVETFANIAPIVREGADWYASIGTEKSKGTKIFALTGKIRNNGLIEVP 370

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M I+  +++E+  GG+  G   + AV  GG S  C+PA  +   + DYD L  +GS +G+
Sbjct: 371 MGISLRQIVEEMGGGVPEG--QVKAVQTGGPSGGCIPADLLDTPV-DYDSLTALGSMMGS 427

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++VMD ST++++       F + ESCG+C PCR GT  +  ++ +L+   A   ++D 
Sbjct: 428 GGMVVMDESTNMVEVAHFYMEFCRGESCGKCIPCRAGTVQLYGLLTKLLHKQATPADLDK 487

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L E+   ++  ++C LG +A  P+   ++ F
Sbjct: 488 LKELCAMVKETSLCGLGMSAPNPVLSTLRYF 518


>gi|17228247|ref|NP_484795.1| hydrogenase subunit [Nostoc sp. PCC 7120]
 gi|17130097|dbj|BAB72709.1| hydrogenase subunit [Nostoc sp. PCC 7120]
          Length = 544

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 224/368 (60%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ V  SGLRGRGGAG+ TG+KW+ + K   +R  +++ NADE +PG   DR ++  +P
Sbjct: 162 VVDSVSRSGLRGRGGAGYPTGLKWATVAKAKGER-KFVICNADEGDPGAFMDRSVLESDP 220

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H ++EG  IA++A+GA   +IYVR E+    + L  A+ +    GLLGSN  +  +D  I
Sbjct: 221 HRVLEGMAIAAYAVGASQGYIYVRAEYPIAIKRLHTAIHQAQRLGLLGSNIFESPFDFKI 280

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGAY+CGEETAL+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A +  I+
Sbjct: 281 DIRIGAGAYVCGEETALMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPII 340

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R+GA W++  G   ++GTK+F+++G +     +E  M  +  +++ +  GGI  G     
Sbjct: 341 RKGADWFASIGTAKSKGTKVFALAGKIRNTGLIEVPMGTSLRQIVAEMGGGIPDG-GVAK 399

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  C+PA      + DY+ L  +GS +G+  +IVMD +T+++        F  
Sbjct: 400 AVQTGGPSGGCIPASAFDTPV-DYESLTNLGSMMGSGGMIVMDDTTNMVDVARFFMEFCM 458

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  +  ++ ++ +G A   +++LL E+   ++  ++C LG +A  P+
Sbjct: 459 DESCGKCIPCRVGTVQLHGLLSKIREGKASLADLELLEELCDMVKNTSLCGLGQSAPNPV 518

Query: 402 QGLIKNFR 409
              +  FR
Sbjct: 519 FSTLHYFR 526


>gi|119475815|ref|ZP_01616167.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium
           HTCC2143]
 gi|119450442|gb|EAW31676.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium
           HTCC2143]
          Length = 522

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 230/410 (56%), Gaps = 5/410 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L DQ R+ F  +  +   S+   +  G +  +   L K    I+ ++  SGLRGRGGA F
Sbjct: 103 LRDQQRLTFARVGIIDPLSIEHFLQHGGFQGLKHALTKKPAEIVVDITDSGLRGRGGAAF 162

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    SD+  Y+V NADE + GT  DR IM  +P +LIEG +IA  A+GA  
Sbjct: 163 PTGIKWQTVLLTESDQ-KYIVCNADEGDSGTFADRMIMESDPFSLIEGMIIAGLAVGATR 221

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+   ++ L+ A+        LG      G++  + V  GAGAYICGEETALL
Sbjct: 222 GYIYLREEYRLAQQVLEQAIHVAEEHHYLGEQVHGSGHEFRLEVRMGAGAYICGEETALL 281

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEGK+G  R KPP PA  GL+G PT VNNV S+A VP IL RG+ +Y  +G   +RGT
Sbjct: 282 DSLEGKRGMVRTKPPVPAVAGLFGKPTVVNNVLSLATVPVILARGSQFYKDYGLGRSRGT 341

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V +   VE +  I+  +L+    GG R G   + A+  GG     LP  Q  
Sbjct: 342 IPLQLAGNVRHAGLVEVAFGISLRKLVTYFGGGTRTG-KPIKAIQVGGPLGAYLPTAQWD 400

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++G+ LG   V+V D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 401 TP-LDYEAFTDIGAILGHGGVVVFDDTVDMAEQAQFAMEFCAIESCGKCTPCRIGSTRGV 459

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            V+E++ +G  +++   LL ++ + +E  ++CA+G    +P+     NFR
Sbjct: 460 EVLEKIRQGTQREKNSQLLIDLCETMELGSLCAMGGMTPFPVLSAFNNFR 509


>gi|313672282|ref|YP_004050393.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939038|gb|ADR18230.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 595

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 163/402 (40%), Positives = 235/402 (58%), Gaps = 7/402 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + D ++ G ++ + K+L E   + +I EVK SGLRGRGG GF TG+KW F      D 
Sbjct: 129 EDIDDYIAHGGYEAIKKVLKEMTPEQVIEEVKKSGLRGRGGGGFPTGVKWGFCRASKGDL 188

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YL+ NADE +PG   DR I+   PH +IEG +IA++AIG    +IY R E+    + +
Sbjct: 189 -KYLICNADEGDPGAFMDRSIIEGNPHVVIEGMLIAAYAIGCREGYIYCRAEYPLAIKRV 247

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPP 194
           + A+      G LG N  LG D +  +H   GAGA++CGEETAL+ S+EG++G PR +PP
Sbjct: 248 KKALRIAEERGFLGKNI-LGTDFEFHLHLKEGAGAFVCGEETALIASIEGERGMPRSRPP 306

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GL+G PT VNNVE+ A +P I+  GA +Y+  G E ++GTK+F++SG V     V
Sbjct: 307 FPAVRGLWGKPTNVNNVETFANLPLIILDGADFYASMGTEKSKGTKIFALSGKVKSTGLV 366

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M IT  +LI    GGI        AV  GG S  CLP   +   I DYD L   G+ 
Sbjct: 367 EVPMGITVRQLIFDVGGGIPKKR-KFKAVQLGGPSGGCLPESLLDTPI-DYDSLIAAGAM 424

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  V+VMD +  ++        F + ESCG+C PCR GT  M+ ++ R+  G  ++ +
Sbjct: 425 MGSGGVVVMDETNCMVNVAQFFLTFTQRESCGKCIPCRIGTKTMLDILNRITSGEGREGD 484

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           I+ L +++++I+  ++C LG  A  P+   IK FR   E  I
Sbjct: 485 IENLLDLAQDIKTASLCGLGQTAPNPVITTIKYFRDEYEAHI 526


>gi|126656036|ref|ZP_01727420.1| hydrogenase subunit [Cyanothece sp. CCY0110]
 gi|126622316|gb|EAZ93022.1| hydrogenase subunit [Cyanothece sp. CCY0110]
          Length = 535

 Score =  266 bits (680), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 251/409 (61%), Gaps = 9/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q  +  N   +  +S+ D +SRG +  +  +L E   + +  EV  SGLRGRGG G+ TG
Sbjct: 122 QPIVLENSGKIDPESIDDYISRGGYQQLHHVLLEMTPNDVTQEVTKSGLRGRGGGGYPTG 181

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW+ + K+ S +  Y++ NADE +PG   DR ++  +PH ++EG  IA++A+GA+  +I
Sbjct: 182 VKWATVAKM-SGQQKYVICNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGANHGYI 240

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLE 180
           Y+R E+    + L+ A+ +    GL+GS   +S   + +DI V  GAGA++CGEETAL+ 
Sbjct: 241 YIRAEYPLAIKRLEKAIQQAKRYGLMGSQIFDSPFDFKIDIRV--GAGAFVCGEETALIA 298

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G PR +PP+PA  GL+G PT +NNVE+ A +  I+R G  WY+  G EN++GTK
Sbjct: 299 SVEGKRGTPRPRPPYPAESGLWGDPTLINNVETYANIVPIIREGGDWYASIGTENSKGTK 358

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G V     +E  M  +  ++IE+  GG+      + AV  GG S  C+PA  +  
Sbjct: 359 VFALTGKVENNGLIEVPMGTSIRKIIEEIGGGVL-DQGTVKAVQTGGPSGGCIPA-HLLD 416

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             ++YD L+++G+ +G+  +IVMD+ T +++       F + ESCG+C PCR GT  +  
Sbjct: 417 TPVEYDSLQKLGTIMGSGGMIVMDQDTSMVEIARFYMDFCQEESCGKCIPCRAGTVQLYD 476

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ +LV+  A ++++D L  + + ++  ++C LG  A  P+   ++ F+
Sbjct: 477 LLTKLVERKATQQDLDKLEALCQMVKDTSLCGLGMTAPNPVISTLQYFQ 525


>gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
 gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 596

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 163/421 (38%), Positives = 248/421 (58%), Gaps = 7/421 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  + + ++++   +  + K+L E   + +I EVK SGLRGRGG GF T
Sbjct: 114 QRRIALRNCGVINPEDIREAIAFDGYKALAKVLTEMTPEQVIEEVKKSGLRGRGGGGFPT 173

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW F  K   + P Y+V NADE +PG   DR I+  +PH+++E   IA +AIGA+  +
Sbjct: 174 GVKWEFAYKQ-KETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGY 232

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    + L+ A+ +    GLLG +    G+D DI +  GAGA++CGEETALL S
Sbjct: 233 IYVRAEYPLAVKRLKIAIQQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETALLNS 292

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           + GK+G+PR +PPFPA  G++G PT +NNVE+ A +P I+  G  W++  G E ++GTK+
Sbjct: 293 IMGKRGEPRPRPPFPAVKGVWGKPTIINNVETFANIPPIILNGGEWFASIGTEKSKGTKV 352

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G VN    +E  M  T  E+I +  GG   G     AV  GG S  C+PA ++   
Sbjct: 353 FALTGKVNNTGLIEVPMGTTLREIIYEI-GGGIPGGKKFKAVQIGGPSGGCIPA-ELLDT 410

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DYD L   G+ +G+  ++VMD  T ++        F   ESCG+C PCR GT  M+ +
Sbjct: 411 PIDYDSLTSAGAMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKRMLEL 470

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++++  G  ++ +I+ L E++K I+   +C LG  A  P+   ++ FR   E  I +  R
Sbjct: 471 LDKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIKE-KR 529

Query: 422 C 422
           C
Sbjct: 530 C 530


>gi|301058595|ref|ZP_07199600.1| NADH-quinone oxidoreductase subunit F [delta proteobacterium
           NaphS2]
 gi|300447327|gb|EFK11087.1| NADH-quinone oxidoreductase subunit F [delta proteobacterium
           NaphS2]
          Length = 473

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 152/368 (41%), Positives = 210/368 (57%), Gaps = 8/368 (2%)

Query: 54  GRGGAGFSTGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           G   AGF+TG+KWSFMPK   +    Y+V NADE EPG  KDR +M   PH LIEG +I 
Sbjct: 95  GHVSAGFTTGIKWSFMPKGEHAASQAYVVANADEMEPGVFKDRVLMEGNPHQLIEGMLIT 154

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD--VDIIVHHGAGAY 170
           + AIGA+  +I++R  + +    ++ A++E + +G LG +  LG D  VDI +H  AG Y
Sbjct: 155 AHAIGANTGYIFLRWAYKKAARCIEKAINEAHEAGYLGEHI-LGTDFGVDIFLHTSAGRY 213

Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230
           ICGE TALL SLEG++  PR KPP  A VGL+G PT VNNVE+++ VP IL+ GA WY  
Sbjct: 214 ICGEATALLNSLEGRRANPRAKPPHTAAVGLWGRPTDVNNVETLSNVPHILKNGADWYKD 273

Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
               +  GTK++ +SG V  P   E  M  T  E+IE+H GG+  G+  L   +PGG+S 
Sbjct: 274 LSLTDEGGTKIYGVSGRVKGPGWWELPMGTTAREIIEEHAGGMADGY-RLRGFLPGGAST 332

Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
             L A  +    MD   +  +GS +G   +I++D  T  +  +  +  F+  ESCG CTP
Sbjct: 333 EFLLAEHLD-VPMDVKSVSALGSRMGCGTMIILDDKTCPVGMVNNVMHFFARESCGWCTP 391

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG--RTICALGDAAAWPIQGLIKNF 408
           CREG  W  RV+  +  G     +++ L   ++ I G   T CAL   A  P+Q  +  F
Sbjct: 392 CREGLPWTSRVLSAIEAGEGHPEDMERLRSHARWIGGPDSTFCALAPGAMEPLQSALTYF 451

Query: 409 RPLIEERI 416
                E I
Sbjct: 452 EDDFREHI 459


>gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 626

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 151/393 (38%), Positives = 232/393 (59%), Gaps = 5/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D M+RG + ++ K+L + + D II  +K +GLRGRGG GF TG+KW       SD  
Sbjct: 160 SIEDYMARGGYSSLIKVLSQMQADEIIEMIKNAGLRGRGGGGFPTGLKWEAAKNSKSDV- 218

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            ++V N DE +PG   +R ++  +PH ++EG +IA + IGA  A+ Y+R E+    +  Q
Sbjct: 219 KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYTIGAQKAYAYIRAEYPIAIQMFQ 278

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+D+    GLLG N  + G+  D+ +  GAGA++CGEETALL S+EGK+G PR +PPFP
Sbjct: 279 KAIDDAKKLGLLGENILQTGFSFDVEIKEGAGAFVCGEETALLASIEGKRGMPRPRPPFP 338

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNVE+ A +  I+R G   Y   G EN+ GTK+FS++G +     +E 
Sbjct: 339 AQSGLWGYPTLINNVETYANISRIIRDGVEKYRLLGTENSPGTKMFSVTGPLKVTGIIEV 398

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++I + CGG+  G +   AV  GG S  CL + +     +DYD LK   + +G
Sbjct: 399 EFGTTLRKIIYEICGGLLSG-EEFKAVQIGGPSGACL-SKEFLDMPLDYDTLKSADAMVG 456

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++V+ + T +++       F K ESCG+C PCREGT     ++E+  +  A K +++
Sbjct: 457 SGGIVVITKRTCMVEVARFFLDFTKRESCGKCIPCREGTMQAYNILEKFTQAKATKEDLE 516

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            L  ++  I+  ++C LG  A  PI   +K F+
Sbjct: 517 NLEFLANLIKKTSLCGLGKTAPNPILSTLKLFK 549


>gi|320161182|ref|YP_004174406.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
 gi|319995035|dbj|BAJ63806.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
          Length = 594

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 157/417 (37%), Positives = 244/417 (58%), Gaps = 6/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +   ++ D ++   +  + K+L +   + +I+EV  SGLRGRGGAGF TG KW
Sbjct: 116 VLRNCGVIDPNNIEDYIAEDGYMALAKVLSDMTPEQVIDEVTRSGLRGRGGAGFLTGRKW 175

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F     +D   Y+V NADE +PG   +R ++  +PH++IEG +IA++AIGA   +IY R
Sbjct: 176 QFCRNSQADM-KYIVCNADEGDPGAFMNRRVLESDPHSVIEGMIIAAYAIGARQGYIYCR 234

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    ++L  A+ +    G LG N    G+  D+ V  GAGA++CGEETAL+ S+EG+
Sbjct: 235 AEYPLAVKTLNIAIKQAREFGFLGENILGTGFSFDLEVRQGAGAFVCGEETALMASIEGR 294

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G+PR +PPFPA  GL+G PT +NNVE+ A VP I+ +GA W++  G E ++GTK F+++
Sbjct: 295 RGEPRPRPPFPAVSGLWGKPTNINNVETYANVPQIILKGADWFASMGTEKSKGTKTFALA 354

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V +   +E  + IT  E++    GGI+       A+  GG    CLPA +     +DY
Sbjct: 355 GDVKHTGLIEVPLGITLREIVYDVGGGIKDD-KGFKAIQTGGPMGGCLPA-EFLDLPVDY 412

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L + GS +G+  ++VMD  T ++        F + ESCG+CTPCR GT  ++ ++ R+
Sbjct: 413 ESLTQAGSIMGSGGMVVMDEETCMVDIARFFMEFTQEESCGKCTPCRIGTRRLLEILTRI 472

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +G  +  +I+ L E+   I   ++C LG  A  P+   +K FR   E  I +  RC
Sbjct: 473 CEGKGEDGDIERLEELCDQIRTASLCGLGQGAPNPVASTLKYFRHEYEAHIYE-KRC 528


>gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479]
 gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479]
          Length = 573

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 154/392 (39%), Positives = 228/392 (58%), Gaps = 5/392 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + + +  G +  + K+L E   D +I  +  SGLRGRGGAGF TG+KW       +D+  
Sbjct: 107 IEEYIGTGGYQALGKVLTEMTPDDVIQVLLDSGLRGRGGAGFPTGLKWKLAKGNDADQ-K 165

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA   +IYVR E+    + L+ 
Sbjct: 166 YVCCNADEGDPGAFMDRSVLEGDPHAVLEAMTIAGYAIGASQGYIYVRAEYPIAVQRLKI 225

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+++     LLG +    G+  +I +  GAGA++CGEETAL+ S+EG +G+PR +PPFPA
Sbjct: 226 AIEQAREMELLGDDIFGSGFSFNIDLRLGAGAFVCGEETALMVSIEGNRGEPRPRPPFPA 285

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT +NNVE+ A +P I+  G  W++  G E ++GTK+F++ G ++    VE  
Sbjct: 286 QKGLFGKPTILNNVETWANIPQIILNGPEWFASMGTEKSKGTKVFALGGKIHNTGLVEVP 345

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M  T  E+IE+  GGI  G     A   GG S  C+PA      I DYD L  +GS +G+
Sbjct: 346 MGTTLREIIEEIGGGIPNG-KKFKAAQTGGPSGGCIPAEHFDIPI-DYDNLVAIGSMMGS 403

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             +IVMD    ++        F   ESCG+CTPCR GT  M+ ++E++ KG A   ++D 
Sbjct: 404 GGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTPCRIGTKRMLEILEKITKGQATMADLDK 463

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           L E+   I+  + CALG  A  P+   ++ FR
Sbjct: 464 LEELCYYIKANSACALGQTAPNPVLSTLQYFR 495


>gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
 gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
          Length = 631

 Score =  266 bits (679), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 156/383 (40%), Positives = 225/383 (58%), Gaps = 5/383 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +  SGLRGRGG GFSTG KWSF     SD   Y++ NADE +PG   DR I+  
Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH++IE   IA +AIGA    IY+R E+      L+ A+D+    GLLG N    G++ 
Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNF 306

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P 
Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ RGA WY   G E + GTK+F+++G +N    VE  M  T  E+I    GGI+ G   
Sbjct: 367 IINRGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++        F
Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR G   ++  + ++  G   + +++ L E+S  I+  ++C LG  A  
Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544

Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422
           P+   ++ F    E  +++  RC
Sbjct: 545 PVLSTMRYFIDEYEAHVNE-KRC 566


>gi|152996297|ref|YP_001341132.1| NADH dehydrogenase [Marinomonas sp. MWYL1]
 gi|150837221|gb|ABR71197.1| NADH dehydrogenase (quinone) [Marinomonas sp. MWYL1]
          Length = 522

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 162/410 (39%), Positives = 231/410 (56%), Gaps = 5/410 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +   SLSD      ++ + K L      ++++VK SGLRGRGGA F
Sbjct: 100 LKHQQRLTFARIGEIDPLSLSDYQKLNGFNGLKKALTMDSQALVDQVKESGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S++  Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 160 PTGIKWQTVLNAPSEQ-KYIVCNADEGDSGTFADRLVMECDPFMLIEGMIIAGLAVGATQ 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    ++L  A+   Y + LLG + +  G   D+ V  GAGAYICGEET+LL
Sbjct: 219 GYIYLRSEYPLAYKTLNQAIGLAYGNNLLGRDIQGSGKHFDLEVRLGAGAYICGEETSLL 278

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA VGL+G PT VNNV S+A VP IL +GA  Y+  G   +RGT
Sbjct: 279 ESLEGKRGLVRAKPPLPAIVGLFGQPTVVNNVLSLAAVPFILDQGAKAYADCGMGRSRGT 338

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +      EL+    GG R G   L AV  GG     LP  Q  
Sbjct: 339 LPFQLAGNVKRGGLVELAFGPKLSELMFDFGGGTRNGRP-LRAVQVGGPLGAYLPESQWD 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   + G+ LG   V++ D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 398 -TQLDYEEFAKEGAVLGHGGVVMFDDTVDMSEQARFSMEFCVAESCGKCTPCRIGSTRGV 456

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            V++R+  G      I+LL ++ + +   ++CA+G    +P+Q  +K+FR
Sbjct: 457 EVIDRIRAGENVNSNIELLEDLCETMVDGSLCAMGGMTPFPVQSAMKHFR 506


>gi|16330689|ref|NP_441417.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
 gi|1653181|dbj|BAA18097.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
 gi|1771717|emb|CAA66209.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
          Length = 533

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 150/403 (37%), Positives = 247/403 (61%), Gaps = 9/403 (2%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ + ++ G ++ + K++ E   + +I E+  SGLRGRGG G+ TG+KW+ + K+   +
Sbjct: 134 ESIDEYIALGGYEQLHKVVYEMTPEEVIVEMNKSGLRGRGGGGYPTGLKWATVAKMPGQQ 193

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ NADE +PG   DR ++  +PH ++EG  IA++A+GA+  +IYVR E+    + L
Sbjct: 194 -KYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAAYAVGANHGYIYVRAEYPLAIQRL 252

Query: 137 QAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           Q A+ +    GL+G+   +S + + +DI V  GAGA++CGEETAL+ S+EGK+G PR +P
Sbjct: 253 QKAIQQAKRYGLMGTQIFDSPIDFKIDIRV--GAGAFVCGEETALIASVEGKRGTPRPRP 310

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P+PA  GL+  PT +NNVE+ A V  I+R G  WY   G E ++GTK+F+++G V     
Sbjct: 311 PYPAQSGLWQSPTLINNVETYANVVPIIREGGDWYGSIGTEKSKGTKVFALTGKVENAGL 370

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +E  M  T  +++E+  GG+  G   + AV  GG S  C+PA ++   I +YD L  +G+
Sbjct: 371 IEVPMGTTVRQVVEEMGGGVPNGG-QVKAVQTGGPSGGCIPADKLDTPI-EYDTLLALGT 428

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +G+  +IVMD ST+++        F K ESCG+C PCR GT  +  ++ R ++G A + 
Sbjct: 429 MMGSGGMIVMDESTNMVDVAQFYMDFCKSESCGKCIPCRAGTVQLYDLLTRFLEGEATQE 488

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++  L  +   ++  ++C LG +A  P+   ++ FR   EE +
Sbjct: 489 DLIKLENLCHMVKETSLCGLGMSAPNPVISTLRYFRHEYEELL 531


>gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 613

 Score =  265 bits (678), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 163/422 (38%), Positives = 248/422 (58%), Gaps = 10/422 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTG 63
           Q  + +N   +  +S+   +S+G +  V  +L K +   +I+EVK SGLRGRGG GF TG
Sbjct: 133 QKLVLSNCGEINPESIEAYISKGGYQAVGNVLTKMKPQEVIDEVKNSGLRGRGGGGFLTG 192

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW         +  Y++ NADE +PG   D  I+  +PH +IEG +IA+++IG+   +I
Sbjct: 193 LKWQLARDSIGVK-KYVICNADEGDPGAFMDESILVGDPHKVIEGMIIAAYSIGSDQGYI 251

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180
           YVR E+    + L+ A+D+    G LG         ++++I V  GAGA++CGEETAL+ 
Sbjct: 252 YVRAEYPLAIKRLEKAIDQAKQYGFLGKEMFGEVFSFNIEIKV--GAGAFVCGEETALIA 309

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G PR KPPFPA  GL+G PT +NNVE+ A +P I+ RGA ++   G + ++GTK
Sbjct: 310 SIEGKRGMPRSKPPFPAEEGLWGKPTNINNVETYANIPIIINRGAEFFRSIGTKGSKGTK 369

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS++G +     VE  M I+  E+I    GG+        AV  GG S  CL   ++  
Sbjct: 370 VFSLTGKIENTGLVEVPMGISMKEIIYDIGGGVPNNR-KFKAVQIGGPSGGCLTEEKLDL 428

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            + DYD L ++G+ +G+  ++VMD    ++        F   ESCG+CTPC EGT  M+ 
Sbjct: 429 PV-DYDSLLQVGAIMGSGGLVVMDEDNCMVDMARFFLNFTVEESCGKCTPCSEGTRRMLE 487

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++E++V G A+  ++D L  ++K I+   +C LG AA  PI   +K FR   EE I +Y 
Sbjct: 488 ILEKIVNGRAKIEDLDQLENLAKTIKDTALCGLGQAAPNPILSTLKYFRHEYEEHI-KYK 546

Query: 421 RC 422
           +C
Sbjct: 547 KC 548


>gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 631

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 155/383 (40%), Positives = 225/383 (58%), Gaps = 5/383 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +  SGLRGRGG GFSTG KWSF     SD   Y++ NADE +PG   DR I+  
Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH++IE   IA +AIGA    IY+R E+      L+ A+D+    GLLG N    G++ 
Sbjct: 247 DPHSIIEAMAIAGYAIGASKGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILGTGFNF 306

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P 
Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ +GA WY   G E + GTK+F+++G +N    VE  M  T  E+I    GGI+ G   
Sbjct: 367 IINKGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++        F
Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR G   ++  + ++  G   + +++ L E+S  I+  ++C LG  A  
Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544

Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422
           P+   ++ F    E  +++  RC
Sbjct: 545 PVLSTMRYFMDEYEAHVNE-KRC 566


>gi|160902610|ref|YP_001568191.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
 gi|160360254|gb|ABX31868.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
          Length = 404

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 141/396 (35%), Positives = 233/396 (58%), Gaps = 11/396 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           K L  S+    +  +   L      +IN++K SGLRGRGGAGF TG+KW  +  +  D  
Sbjct: 8   KDLGKSLEEYDFPGLKNALNMEPQQVINKIKESGLRGRGGAGFPTGIKWETVLSI-EDDT 66

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            +++ NADE EPGT KDR ++ + P  ++EG +I+ +A G+   +IY+RGE++   + ++
Sbjct: 67  KFIICNADEGEPGTFKDRFLLENLPFKVLEGIIISGYATGSKYGYIYIRGEYVEAIKIIK 126

Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            A+++ Y   +LG N   S   +D+ ++   GAGAY+CG+ET+L+ S+EG +G+ R+KPP
Sbjct: 127 KAIEKLYEKNILGENILNSDFSFDLKLV--RGAGAYVCGDETSLINSIEGDRGKSRIKPP 184

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            P   GLYG PT VNNVE++A    I+    + YS  G E +RGTKL SISG VN P   
Sbjct: 185 LPVFEGLYGKPTVVNNVETLAAAAEIMSYDNNPYSEMGTEKSRGTKLVSISGDVNKPGVY 244

Query: 255 E-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           E E   +T  +++++  GG++G  + +  VIPGG S   L   ++      Y+ L++MGS
Sbjct: 245 EVEFGKLTVKDIVQELAGGVKG--EKIGFVIPGGISTEALTEEELD-VPYTYENLQKMGS 301

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK-GIAQK 372
            +G+  +IV+    + ++ +  +S F++ E+CG C PCREG   + +++  + K G    
Sbjct: 302 NIGSGGMIVVSSQRNYLEIVKNVSDFFRDETCGTCFPCREGNKNINKIVSDIYKRGYPTS 361

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           REI+++ ++   +     C  G+++   I  + + F
Sbjct: 362 REIEIISDIQYAVSSAARCGFGESSLNLILSIFEKF 397


>gi|217970648|ref|YP_002355882.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
 gi|217507975|gb|ACK54986.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
          Length = 627

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 218/384 (56%), Gaps = 21/384 (5%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESEPGTCK 93
           E+G   ++ E++ SGLRGRGGAGF + +KW    + C D     HY++ NADE EPGT K
Sbjct: 190 ERGPTGLLWEIERSGLRGRGGAGFGSDIKW----RSCRDAWGDAHYVICNADEGEPGTFK 245

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152
           DR ++      +++G  IA  AIGA+  FIY+RGE+    + L+  + +     LLG N 
Sbjct: 246 DRVLLSSYFDLVVDGMCIAGMAIGANKGFIYLRGEYRYLLDRLETRLAQRREQNLLGRNI 305

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
              G+  DI +H GAGAYICGEE+AL+ESLEGK G+PR++PPFP   G  G PTTVNNVE
Sbjct: 306 LGRGFSFDIEIHLGAGAYICGEESALIESLEGKPGKPRIRPPFPVTNGYRGQPTTVNNVE 365

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           ++A+   I  RG  W+   G   + GTKL S+SG V  P   E    +T  E++E     
Sbjct: 366 TLALAALIAVRGGDWFHAIGTPASTGTKLLSVSGDVERPGIYEFPFGVTVAEVLEA---- 421

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
              G  +  AV   G++  CL A +  G  + ++ +   GS      ++V DRS D+ + 
Sbjct: 422 --AGARDTQAVTSAGAAGHCLAADEF-GRRIAFEDVATGGS------IMVFDRSRDMFEV 472

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
               + F+ HESCG CTPCR GT    R++++L        ++D + ++ + ++G + C 
Sbjct: 473 AHNFAHFFAHESCGFCTPCRVGTAVNARLLDKLAADHGSPYDLDEIAKMHRLMQGASHCG 532

Query: 393 LGDAAAWPIQGLIKNFRPLIEERI 416
           LG+ A   I  ++  FRP  E R+
Sbjct: 533 LGNTATIAIDDMLAKFRPAFERRL 556


>gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. 230613]
          Length = 631

 Score =  265 bits (677), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 155/383 (40%), Positives = 225/383 (58%), Gaps = 5/383 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +  SGLRGRGG GFSTG KWSF     SD   Y++ NADE +PG   DR I+  
Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDV 159
           +PH++IE   IA +AIGA    IY+R E+      L+ A+D+    GLLG N    G++ 
Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILGTGFNF 306

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P 
Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ +GA WY   G E + GTK+F+++G +N    VE  M  T  E+I    GGI+ G   
Sbjct: 367 IINKGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++        F
Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR G   ++  + ++  G   + +++ L E+S  I+  ++C LG  A  
Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544

Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422
           P+   ++ F    E  +++  RC
Sbjct: 545 PVLSTMRYFMDEYEAHVNE-KRC 566


>gi|188995984|ref|YP_001930235.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931051|gb|ACD65681.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 523

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 163/413 (39%), Positives = 235/413 (56%), Gaps = 11/413 (2%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
              +Q RI     GL    S+ D  S G +  + K +    + II E+K SGLRGRGGAG
Sbjct: 101 FFKNQTRITFERVGLVDPLSIKDYQSNGGFLGLKKAISMKSEEIIEEIKKSGLRGRGGAG 160

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + K  SD+  Y+V NADE + GT  DR IM  +P  LIEG VIA  A+GA 
Sbjct: 161 FPTGIKWETVFKTGSDK-KYVVCNADEGDSGTFSDRMIMESDPFLLIEGMVIAGLAVGAD 219

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+R E+   +E L  A+D  Y +  LG N    G D D+ V+ GAG+Y+CGEETAL
Sbjct: 220 EGYIYLRSEYPLAKEVLTKAIDLAYKNRYLGKNILGSGKDFDLEVYVGAGSYVCGEETAL 279

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP+PA  GL+  PT +NNV ++A VP I+R G   Y  +G   +RG
Sbjct: 280 LESLEGKRGVVRPKPPYPAINGLWNKPTLINNVNTLATVPWIIREGGDKYFNYGVGKSRG 339

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI--PGGSSVPCLPAG 296
           T    +SG+V +P  VE    I+  +++    GG + G     A+I  P G  +P     
Sbjct: 340 TIAIQLSGNVKHPGLVEVPFGISIKDIVYGFGGGTKTGKKVKAALIGGPFGIYIP----E 395

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGT 355
            M    +DY+ L ++G  +G  +++V D   D +K + R ++ F   ESCG+C PCR G+
Sbjct: 396 SMFDISIDYESLSKIGGTIGHGSIVVFDEEAD-LKYLARFAMEFCFIESCGKCAPCRIGS 454

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
              + ++++L+     +R I +  ++S+ +   ++C LG  A  PI  L K+F
Sbjct: 455 IRGLEILDKLLNQGRDERLISMFVDLSEVMINTSLCGLGGMAPKPILSLFKHF 507


>gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5]
 gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5]
          Length = 628

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 242/411 (58%), Gaps = 5/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + + +S G ++ ++K+L   + + +I E+  S LRGRGG GF TG KW
Sbjct: 149 VLKNCGQIDAEHIQEYISTGGYEALEKVLFNMKPEEVIQEITESNLRGRGGGGFQTGYKW 208

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S + +   ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+GA   +IYVR
Sbjct: 209 SQVARQ-QEKERYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIAAYAVGASEGYIYVR 267

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+      L+ A+ +    GLLG +    G+   + ++ GAGA++CGE +AL  S+EG 
Sbjct: 268 AEYPLAISRLKLAIAQAEECGLLGDDILGTGFSFHLHINRGAGAFVCGEGSALTASIEGN 327

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR+KPP     GL+  PT +NNVE+ A VP I+  GA W+   G E++ GTK F+++
Sbjct: 328 RGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIINEGADWFKSIGPESSPGTKAFALT 387

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V +   +E  M  T  E+I    GGI+G  +   AV  GG S  CL    +    +D+
Sbjct: 388 GSVKHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPHLD-INLDF 445

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D LK+MG+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  M+ ++ER+
Sbjct: 446 DSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILERI 505

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V G  +  ++DLL E++  I    +C LG +AA P+   +K FR   E+ +
Sbjct: 506 VAGNGKMEDLDLLEELANTITDTALCGLGKSAALPVVSTLKLFREEYEQHV 556


>gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 625

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/407 (37%), Positives = 238/407 (58%), Gaps = 5/407 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q RI     G +  +++ + ++ G +  + K L+   + I   +  + LRGRGGAGF  G
Sbjct: 143 QSRIVLEHCGKINPENIKEYIAAGGYQALAKALQMTPEEICQVMLKAKLRGRGGAGFPAG 202

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW  + K  SD   Y++ N DE +PG   DR IM  +PH +IEG +IA +A GA   +I
Sbjct: 203 IKWDSVRKQKSDV-KYVICNGDEGDPGAFMDRSIMEGDPHRVIEGMIIAGYASGATQGYI 261

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+      L+ A+++    GLLG N    G+D DI ++ GAGA++CGE +AL+ S+
Sbjct: 262 YVRAEYPLAVRRLKKAIEQAREFGLLGKNILGSGFDFDIKINMGAGAFVCGEGSALIASI 321

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++G P+ +PP     GL+G PT +NNVE+ A VP I+  GA WY   G E + GTK F
Sbjct: 322 EGQRGMPKTRPPRTVEKGLFGKPTVLNNVETYANVPMIILNGADWYLSIGTETSPGTKAF 381

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G++     +E  M  T  E+I +  GGI  G + L AV  GG S  CL    +    
Sbjct: 382 ALTGNIVNTGLIEVPMGTTLREVIYEIGGGIPNGKE-LKAVQIGGPSGGCLTKEHLD-LP 439

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+D L  +G+ +G+  ++VMD  T +++       F + ESCG+C PCREGT  M++++
Sbjct: 440 LDFDTLGTVGAMIGSGGMVVMDEDTCMVEVARFFMSFTQRESCGKCVPCREGTKRMLKLL 499

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           E++  G   +++++LL E++  ++  ++C LG  A  P+   +K FR
Sbjct: 500 EKITSGKGTEKDLELLEELAVTVKDGSLCGLGQTAPNPVLTTLKYFR 546


>gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 598

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 221/368 (60%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ +K SGLRGRGG GF TG+KW F  K   +   Y+  NADE +PG   DR ++  +P
Sbjct: 155 VVDTLKKSGLRGRGGGGFPTGLKWEFAAKQ-PEGQKYVCCNADEGDPGAFMDRSVLEGDP 213

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H++IE   IA +AIG++  +IYVR E+    + LQ A+++    GLLG N     +  D+
Sbjct: 214 HSVIEAMAIAGYAIGSNQGYIYVRAEYPIAVKRLQIAIEQAKEYGLLGKNIFGTDFSFDL 273

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETAL+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+
Sbjct: 274 EIRLGAGAFVCGEETALMTSIEGHRGEPRPRPPFPAVKGLWEKPTILNNVETYANIPMII 333

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +GA W+S  G E ++GTK+F++ G +N    VE  M  T  E++    GGI  G     
Sbjct: 334 LKGAEWFSSIGTEKSKGTKVFAVGGKINNTGLVEIPMGTTLREVLYDIGGGIPNG-KKFK 392

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A   GG S  C+PA  +   I DYD L ++GS +G+  +IVMD    ++        F  
Sbjct: 393 AAQTGGPSGGCIPASHIDTPI-DYDSLIQLGSMMGSGGLIVMDEDNCMVDIAKFFLEFTV 451

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  M+ ++ER+ +G  +  +I+ L  ++KNI+   +C LG  A  P+
Sbjct: 452 DESCGKCPPCRIGTKRMLEILERITEGKGEIGDIEKLEILAKNIKASALCGLGQTAPNPV 511

Query: 402 QGLIKNFR 409
              +K F+
Sbjct: 512 LSTLKYFK 519


>gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
 gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
          Length = 624

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/402 (37%), Positives = 234/402 (58%), Gaps = 5/402 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           K + D M RG + ++ K+L   + + +I  VKASGLRGRGG GF TG+KW F  K   ++
Sbjct: 157 KKIEDYMGRGGYKSLLKVLSSMKPEEVIETVKASGLRGRGGGGFPTGLKWEFTYKAKGEK 216

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             ++V NADE +PG   +R ++  +PH+++EG +IA++ +GA   + Y+R E+    E  
Sbjct: 217 -KFVVCNADEGDPGAFMNRTLLERDPHSVLEGMIIAAYTVGAQKGYAYIRAEYPIAVEMF 275

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             A+++    GLLG N    G+  D+ V  GAGA++CGEETALL S+EGK+G PR +PPF
Sbjct: 276 NKAINDAKKMGLLGENILGTGFSFDLEVKEGAGAFVCGEETALLASIEGKRGVPRPRPPF 335

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE+ A +  I+R G   Y   G E + GTK+FS++G +     +E
Sbjct: 336 PAQKGLWGYPTLINNVETYANIAKIIRDGVENYRKRGVEKSPGTKMFSVTGPLKLTGIIE 395

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T   ++E  CGG   G   L A+  GG S  CLP  +     +DYD LK + + +
Sbjct: 396 IEFGTTIRYVLENICGGTVEG-KKLKAIQIGGPSGACLPE-KYFDLPLDYDTLKSVDAMV 453

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  ++ +   + +++       F K ESCG+C PCREGT     ++E+  +G A   ++
Sbjct: 454 GSGGIVAITEDSCMVEVARFFLDFTKRESCGKCVPCREGTMQSYTILEKFTQGKATHEDL 513

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + L  ++K ++  ++C LG  A  PI   +K+FR    E I+
Sbjct: 514 ENLESLAKIVKTASLCGLGKTAPNPILSTLKHFRDEYMEHIN 555


>gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 626

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/398 (36%), Positives = 235/398 (59%), Gaps = 6/398 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +S+ + ++   +  V K L +   + +++E+  S LRGRGG GF TG KWS + +  
Sbjct: 154 INAESIEEYLAADGYTAVAKALFDMTPEEVVDEISESYLRGRGGGGFQTGRKWSQVLQQ- 212

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +++  Y+V N DE +PG   DR +M  +PH +IEG +IA  A  A+  +IYVR E+    
Sbjct: 213 AEKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGVATKANYGYIYVRAEYPLAV 272

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           + LQ A+D+    GLLG N    G+D D+ +  GAGA++CGE +AL  S+EG +G PR+K
Sbjct: 273 KRLQMAIDQATKVGLLGKNILNSGFDFDLHISQGAGAFVCGEGSALTASIEGNRGMPRVK 332

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PP     GL+  PT +NNVE+   VP+I+ +G+ WY   G E N GTK F+++G+V +  
Sbjct: 333 PPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNYGTKAFALTGNVKHTG 392

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEM 311
            +E  M     E+I    GG++ G     AV  GG S  CL  G+    + +D+D LK++
Sbjct: 393 LIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGENHLELPLDFDSLKKV 450

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  ++VM+  + +++       F ++ESCG+C PCREGT  M+ ++  +V+G   
Sbjct: 451 GAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTKRMLEILTDIVEGRGT 510

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
              +D+L E+S  I    +C LG +A+ P++  +K FR
Sbjct: 511 LEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFR 548


>gi|124265531|ref|YP_001019535.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
 gi|124258306|gb|ABM93300.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
          Length = 573

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/376 (39%), Positives = 225/376 (59%), Gaps = 24/376 (6%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E+  + +++ ++ASGLRG GGAGF  G KW  + +  +  P  + VN DE EPGT KDR 
Sbjct: 212 ERPLETVLSTMEASGLRGLGGAGFPAGRKWRIVREQAA--PRLMAVNIDEGEPGTFKDRH 269

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            +  +PH  +EG +IA++A+G    +IY+R E+   R  L+  +        L ++  + 
Sbjct: 270 YLERDPHRFLEGLLIAAWAVGVDAVYIYLRDEYHGCRTLLEREL------AALRADPPMR 323

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT  +N E++  
Sbjct: 324 DMPAIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLYW 383

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V  IL +G  W++G GR   +G + FS+SG V  P        IT  EL++++CGG+  G
Sbjct: 384 VRDILEKGGDWFAGHGRHERKGLRSFSVSGRVKKPGVHLAPAGITLRELVDEYCGGMLDG 443

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAI 333
              L A +PGG+S   LP  ++    +D+D L+  G  +G+AAV+V+   DR TD+ + +
Sbjct: 444 -HQLHAYLPGGASGGILPE-RLADVPLDFDTLQPHGCFIGSAAVVVLSDQDRVTDVARNL 501

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDLLYEVSKNIEGRTICA 392
            R   F++HESCGQCTPCR GT  +  +       IA  R ++ LL E+S+ +   +IC 
Sbjct: 502 MR---FFEHESCGQCTPCRSGTAKVNEL-------IASDRWDLPLLAELSQVMRDASICG 551

Query: 393 LGDAAAWPIQGLIKNF 408
           LG AA  P+  +IK F
Sbjct: 552 LGQAAPNPVDCVIKYF 567


>gi|270308048|ref|YP_003330106.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS]
 gi|270153940|gb|ACZ61778.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS]
          Length = 626

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 161/416 (38%), Positives = 243/416 (58%), Gaps = 11/416 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N   +   S+ D ++ G + ++ K +   + + I++E+  SGLRGRGG GF TG KW
Sbjct: 147 VFGNNGNIDPTSIEDYLAVGGYKSLAKAISGLKPEEIVDEIIKSGLRGRGGGGFPTGWKW 206

Query: 67  SFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
               K C D      Y++ N DE +PG   DR +M   PH++IEG +I ++AIG+H A+I
Sbjct: 207 ----KSCRDAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGSHEAYI 262

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+         A+ +    GLLG N    G+++ I ++ G GA++CGE TAL+ SL
Sbjct: 263 YIRDEYPMAVRHALLAIKQAEDYGLLGGNILGSGFNLKIHINRGGGAFVCGESTALMASL 322

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK G+PR K    +  GLY  PTT+NNVE+ A +P I+ +GA W++  G   ++GTK+F
Sbjct: 323 EGKVGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIMEKGADWFNKIGTAGSKGTKIF 382

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+ G VN    +E  M IT  E++    GGI  G     A+  GG S  CLP   M    
Sbjct: 383 SLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPE-SMLDLP 440

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+D L + GS +G+ A+IVMD    +++       F + ESCG+C PCREG   M +++
Sbjct: 441 VDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKRMRQIL 500

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           E++ KG  ++ +I+LL ++S+ I+  ++CALG +A  P+   IK FR   E  I Q
Sbjct: 501 EKITKGEGEEGDIELLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIRQ 556


>gi|145589293|ref|YP_001155890.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047699|gb|ABP34326.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 600

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 151/386 (39%), Positives = 223/386 (57%), Gaps = 19/386 (4%)

Query: 25  SRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
           ++G +    +I E  RD   II  +++SGLRG GGAGF  G KW  +    +  P  + V
Sbjct: 227 AKGGYALAKEIAEGKRDAESIIKAMESSGLRGLGGAGFPAGRKWRIVKDQVA--PKLMAV 284

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           N DE EPGT KDR  +  +PH  +EG +IA+  +G    +IY+R E+   RE LQ  +D+
Sbjct: 285 NIDEGEPGTFKDRTYLERDPHRFLEGLLIAASVVGIDACYIYLRDEYHGCRELLQLEIDK 344

Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
                 L +N      + I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A VGL+
Sbjct: 345 ------LKANPPFKLPL-IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQVGLF 397

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           G PT  +N E++  V  I++RG  W+S FGR + +G + FS+SG V  P        IT 
Sbjct: 398 GRPTLEHNFETLYWVRDIVQRGPEWFSSFGRHDRKGLRSFSVSGRVKKPGVKLAPAGITI 457

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            ELI+++CGG++ G       +PGG+S   LPA  M    +D+D L+  G  +G+AAV+V
Sbjct: 458 QELIDEYCGGMQEG-HQFYGYLPGGASGGILPA-TMNDIPLDFDTLQPYGCFIGSAAVMV 515

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
                        +  F++HESCGQCTPCR GTG   ++M+      A+  +   L +++
Sbjct: 516 FSNQDKARDMALNVMHFFEHESCGQCTPCRVGTGKAAKLMQ------AKSWDQTTLEDLA 569

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408
             +   +IC LG AA  PI+ + K F
Sbjct: 570 TVMVDASICGLGQAAPNPIRCIHKYF 595


>gi|209884427|ref|YP_002288284.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5]
 gi|209872623|gb|ACI92419.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5]
          Length = 620

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 152/403 (37%), Positives = 229/403 (56%), Gaps = 9/403 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +S+ D ++   +  + +  E     +I EVK S L GRGGA F  G+KW    K  +  P
Sbjct: 220 ESIDDYLATDGYAGLRRAFEMEPAQVITEVKDSRLMGRGGAAFPAGIKWESTAKQPAT-P 278

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV NADESEPGT KDR I+  +P  LIE   IA +AIGA   +IY+RGE+ R    L 
Sbjct: 279 RYLVCNADESEPGTFKDRSILEGDPFALIESMTIAGYAIGAERGYIYLRGEYPRAYRMLS 338

Query: 138 AAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+++    G LG N +  G+  ++ +  GAGAYICGEETA+  S+EG +G+PR KPPFP
Sbjct: 339 NAIEKARERGFLGENIQGKGWSFELEIRRGAGAYICGEETAIFNSIEGYRGEPRTKPPFP 398

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT VNNVE++  VP I++ G + Y+  G E + G KLF +SG++  P   E 
Sbjct: 399 FEAGLFGKPTVVNNVETLCNVPLIMQLGGAEYAKIGTEGSTGPKLFCVSGNLVRPGVYEV 458

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  +++E   GG+  G   L AV+ GG++   + A ++    + ++G++   + LG
Sbjct: 459 PFGATLGDILEL-AGGVPQGR-KLQAVLLGGAAGVFVRADEL-DIPLTFEGVRAAKATLG 515

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT----GWMMRVMERLVKGIAQK 372
           +  V+  D + D+   + R++ F++ ESCGQC PCR GT      ++R+M       A+ 
Sbjct: 516 SGVVLAFDDTVDLSGILLRIASFFRDESCGQCVPCRVGTVRQEEALLRIMHNGHDAKAKG 575

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            +I +L +V   ++  +IC LG AA   ++  I     L E +
Sbjct: 576 NDIHILRDVGLVMKDASICGLGQAAWNAVESAIDRLGVLEESK 618


>gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 634

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/421 (37%), Positives = 245/421 (58%), Gaps = 9/421 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTG 63
           Q  I +    +  KS+ D ++ G +  + K+L K   + ++ EVK S LRGRGG GF   
Sbjct: 136 QRNILSENIRIDSKSIDDYLAIGGYSALSKVLFKMTPEEVMGEVKKSNLRGRGGGGFPAW 195

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KW    +   D   Y++VNADE +PG   DR ++   PH+++EG +I ++A+GAH  FI
Sbjct: 196 RKWE-ESRNAPDPIKYVIVNADEGDPGAFMDRALIEGNPHSILEGLIIGAYAVGAHEGFI 254

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLES 181
           YVR E+     ++  A+ +    GL+G N  LG  +D  + VH GAGA++CGE +AL+ +
Sbjct: 255 YVRQEYPLAVVNINLAIRQAEERGLVGKNI-LGSNFDFTVKVHMGAGAFVCGESSALMTA 313

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEG+ G+PR K    A  G++  P+ +NNVE+ A V  I+ +GA W++ FG E ++GTK+
Sbjct: 314 LEGRAGEPRPKYIHTAVKGVWDHPSVLNNVETWANVTQIINKGADWFTQFGTEGSKGTKI 373

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+ G +     VE  M +T  ++I+   GG   G     AV  GG S  C+P  Q+   
Sbjct: 374 FSLVGKITNTGLVEVPMGVTLKDIIQNI-GGGIPGGKKFKAVQTGGPSGGCIPEAQL-DL 431

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           ++D+D L + GS +G+  +IVMD  T ++        F K ESCG+CTPCREG   M++V
Sbjct: 432 VVDFDQLTKAGSMMGSGGMIVMDEDTCMVDIARYFIDFLKDESCGKCTPCREGIRQMLKV 491

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +  +  G  ++ +I+LL E++++  G  +CALG +A  P+   I+ FR   E  I ++ +
Sbjct: 492 LTNITTGKGKEGDIELLEELAEST-GAALCALGKSAPNPVLSTIRYFREEYEAHI-RHKK 549

Query: 422 C 422
           C
Sbjct: 550 C 550


>gi|225570605|ref|ZP_03779630.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
 gi|225160618|gb|EEG73237.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
          Length = 628

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/404 (38%), Positives = 238/404 (58%), Gaps = 5/404 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + + ++ G +  + K+L E   + ++ EV  S LRGRGG GF TG KW
Sbjct: 149 VLENCGHIDAEHIEEYIAHGGYKALGKVLFEMKPEEVVQEVLDSNLRGRGGGGFQTGYKW 208

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S + +   +   Y+V N DE +PG   DR IM  +PH +IEG +IA++A+GA   +IYVR
Sbjct: 209 SQVARQ-PETTRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIAAYAVGAQEGYIYVR 267

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+      L+ A+ +    GLLG +    G+   + ++ GAGA++CGE +AL  S+EG 
Sbjct: 268 AEYPLAISRLKLAIRQAQERGLLGDDILGSGFSFRLHINRGAGAFVCGEGSALTASIEGN 327

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR+KPP     GL+  PT +NNVE+ A VP I+ RGA WY   G EN+ GTK F+++
Sbjct: 328 RGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIISRGADWYKTIGPENSPGTKAFALT 387

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V     +E  M  T  E+I    GGI+G  +   AV  GG S  CL   Q     +D+
Sbjct: 388 GSVKNTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLIT-QHLDISLDF 445

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D LK+MG+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  M+ ++ER+
Sbjct: 446 DSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILERI 505

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           V+G  ++ ++D L E+++ I    +C LG +AA P+   +K FR
Sbjct: 506 VQGNGREEDLDTLDELARTITETALCGLGKSAALPVMSTLKLFR 549


>gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 596

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 240/421 (57%), Gaps = 7/421 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  +++ + +  G +  + K+L E   D +I  +  +GLRGRGGAGF T
Sbjct: 114 QHRIALRNCGVINPENIEEYIGTGGYQALGKVLTEMTPDDVIQTLLDAGLRGRGGAGFPT 173

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW    +  +D+  Y+  NADE +PG   DR ++  +PH L+E   IA +AIG++  +
Sbjct: 174 GLKWKLCKQNDADQ-KYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGSNQGY 232

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           +YVR E+    + L  A+ +     LLG N    G+D D+ +  GAGA++CGEETAL+ S
Sbjct: 233 VYVRAEYPIAVDRLNIAIKQAREMELLGKNIFGTGFDFDVDIRLGAGAFVCGEETALMTS 292

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G+PR +PPFPA  GL+G P+ +NNVE+ A +P I+  G  W++  G E ++GTK+
Sbjct: 293 IEGKRGEPRPRPPFPAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSKGTKV 352

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F++ G +N    VE  M  T   +I++  GGI  G     A   GG S  C+PA      
Sbjct: 353 FALGGKINNTGLVEVPMGTTLRTVIDEIGGGIPNG-KKFKAAQTGGPSGGCIPAEHFDIP 411

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I DYD L  +GS +G+  +IVMD    ++        F   ESCG+CT CR GT  M+ +
Sbjct: 412 I-DYDNLLSIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTACRIGTKRMLEI 470

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +E++ KG A+  ++D L E+   ++  ++C LG  A  P+   +  FR   E  I +  R
Sbjct: 471 LEKITKGTAEMEDLDKLEELCHYVKANSLCGLGQTAPNPVLSTLHFFRDEYEAHIKE-RR 529

Query: 422 C 422
           C
Sbjct: 530 C 530


>gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 631

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/383 (40%), Positives = 224/383 (58%), Gaps = 5/383 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +  SGLRGRGG GFSTG KWSF     SD   Y++ NADE +PG   DR I+  
Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH++IE   IA +AIGA    IY+R E+      L+ A+D+    GLLG N    G++ 
Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNF 306

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P 
Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  GA WY   G E + GTK+F+++G +N    VE  M  T  E+I    GGI+ G   
Sbjct: 367 IINGGADWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNG-KK 425

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++        F
Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR G   ++  + ++  G   + +++ L E+S  I+  ++C LG  A  
Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544

Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422
           P+   ++ F    E  +++  RC
Sbjct: 545 PVLSTMRYFMDEYEAHVNE-KRC 566


>gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
 gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
          Length = 595

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/408 (38%), Positives = 233/408 (57%), Gaps = 6/408 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  + + + +  G +  + K+L E   D +I  +  SGLRGRGGAGF T
Sbjct: 113 QHRIALRNCGVINPEEIEEYIGTGGYQALGKVLTEMTPDEVIQVLLDSGLRGRGGAGFPT 172

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW    +  +D+  Y+  NADE +PG   DR ++  +PH L+E   IA +AIGA   +
Sbjct: 173 GLKWKLASQNDADQ-KYVCCNADEGDPGAFMDRSVLEGDPHALLEAMTIAGYAIGASQGY 231

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    + L+ A+++     LLG +    G+  +I +  GAGA++CGEETAL+ S
Sbjct: 232 IYVRAEYPIAVQRLKIAIEQARKMELLGDDIFGSGFSFNIDLRLGAGAFVCGEETALMVS 291

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG +G+PR +PPFPA  GL+G PT +NNVE+ A +P I+  G  W++  G E ++GTK+
Sbjct: 292 IEGNRGEPRPRPPFPAQKGLFGKPTILNNVETYANIPQIILNGPEWFASMGTEKSKGTKV 351

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F++ G ++    VE  M  T  E+IE+  GGI  G     A   GG S  C+P       
Sbjct: 352 FALGGKIHNTGLVEVPMGTTLREIIEEIGGGIPNG-KKFKAAQTGGPSGGCIPVEHYDIP 410

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I DYD L  +GS +G+  +IVMD +  ++        F   ESCG+CTPCR GT  M  +
Sbjct: 411 I-DYDNLISIGSMMGSGGLIVMDETDCMVDIAKFFLEFTVEESCGKCTPCRIGTKRMHEI 469

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++++ KG A   ++D L E+   ++  + C LG  A  P+   +K FR
Sbjct: 470 LDKITKGQATLEDLDRLEELCYYVKENSACGLGQTAPNPVLSTLKFFR 517


>gi|91780571|ref|YP_555778.1| putative NADH dehydrogenase subunit [Burkholderia xenovorans LB400]
 gi|91693231|gb|ABE36428.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Burkholderia xenovorans LB400]
          Length = 610

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 215/384 (55%), Gaps = 22/384 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKD 94
           +G   + +E+  S LRGRGGAGF TGMKW    ++C D P   HY+V NADE EPGT KD
Sbjct: 208 RGVPALFDEMNRSNLRGRGGAGFVTGMKW----RLCRDAPGTEHYIVCNADEGEPGTFKD 263

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152
           R ++   P  ++EG  I + AIGA    +Y+RGE+    E L   +     + LLG++  
Sbjct: 264 RVLLTRHPDMVVEGMTIGALAIGARRGMLYLRGEYRYLLEPLLDVLQRRREAHLLGASIL 323

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
              G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PPFPA  G    PT V+NVE
Sbjct: 324 GHAGFDFDIDIHVGAGAYVCGEESALIESLEGKRGTPRIRPPFPAEHGYLQQPTVVDNVE 383

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           ++     +  +G +W+S  G   + GT L S+SG    P   E  +  + D ++E  CG 
Sbjct: 384 TLCAATHVALQGGAWWSAIGTPKSTGTSLHSVSGDCERPGIYEYPLGTSVDRILED-CGA 442

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
                 +  AV  GG S  CL A +  G  + ++ +   G      A +V DRS D+ + 
Sbjct: 443 -----RDTQAVQVGGPSGKCLSAIEF-GHRIAFEDVPSAG------AFMVFDRSRDMFEV 490

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
               + F+  ESCG CTPCR GT  +++ M++L  G   + +++LL ++   + G T C 
Sbjct: 491 ARNYAGFFAEESCGFCTPCRVGTALVVKSMDKLAAGRGSRHDVELLSDIDILMHGTTHCG 550

Query: 393 LGDAAAWPIQGLIKNFRPLIEERI 416
           LG +A   +   I  FRP  E R+
Sbjct: 551 LGGSACNALHDTIVKFRPAYERRL 574


>gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydrogenase subunit beta Fdh1B
           [Herminiimonas arsenicoxydans]
 gi|133737538|emb|CAL60581.1| NADH dehydrogenase (Quinone) [Herminiimonas arsenicoxydans]
          Length = 567

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 215/372 (57%), Gaps = 16/372 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E+  + ++  ++ SGLRG GGAGF  G KW  +       P  + VN DE EPGT KDR 
Sbjct: 207 ERDVESVLKTMEDSGLRGLGGAGFPAGRKWRIVRG--EKGPRLMAVNIDEGEPGTFKDRV 264

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            +  +PH  +EG +IA++A+     +IY+R E+   R  L+A + +      L +N  + 
Sbjct: 265 YLEKDPHRFLEGMLIAAWAVDIQTIYIYLRDEYHGCRVMLEAELAK------LKANPPIA 318

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT  +N E++  
Sbjct: 319 NMPEIFLRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLYW 378

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V  IL +G  W++  GR   +G + +S+SG V  P        IT  ELI++HCGG+  G
Sbjct: 379 VRDILEKGGEWFTSHGRNGRKGLRSYSVSGRVKNPGVKLAPAGITIQELIDEHCGGMLDG 438

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                  +PGG+S   LPA  M    +D+D L+  G  +G+AAVIVM      ++A   +
Sbjct: 439 -QTFYGYLPGGASGGILPA-SMNDIPLDFDTLQPYGCFIGSAAVIVMSDKDTAVQAARNM 496

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
             F+KHESCGQCTPCR GT     ++++       K ++ LL ++S  +   +IC LG A
Sbjct: 497 MDFFKHESCGQCTPCRVGTAKAAELIKK------PKWDVGLLEDLSLVMRDSSICGLGQA 550

Query: 397 AAWPIQGLIKNF 408
           A  PI  ++K F
Sbjct: 551 APNPIDCVVKYF 562


>gi|466365|gb|AAA87056.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
           fructosovorans]
          Length = 490

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 233/416 (56%), Gaps = 6/416 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q RI T   G +  +S+ D ++   ++ + K+L      +++ VK SGLRGRGGAGF TG
Sbjct: 10  QLRIATRNCGFIDPESIDDYIALRGYEGLAKVLTMTPAEVVDLVKRSGLRGRGGAGFPTG 69

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW       +D+  Y+V NADE +P    DR ++  +PH+++E   I  +AIGA    +
Sbjct: 70  IKWGIALGNKADQ-KYMVCNADEGDP-EFMDRAVLEGDPHSVVEAMAIGGYAIGATRGTV 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    + L+ A+D+    GLLG N    G+D DI + +GAGA++CGEETAL+ S+
Sbjct: 128 YIRAEYPLAIKRLKKAIDDAREYGLLGENIFGSGFDFDIELKYGAGAFVCGEETALIRSM 187

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G+P  KPPFPA  G +  PT VNNVE+ A +P I+  GA W+SG G   ++GTK+F
Sbjct: 188 EGKRGEPVTKPPFPAQSGYWEKPTIVNNVETFANIPAIIINGADWFSGIGTATSKGTKVF 247

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G +     +E  M I+  E+I    GG   G     AV  GG S   L    +  AI
Sbjct: 248 ALAGKIQNVGLIEVPMGISLREVIFDIGGGCPDG-KAFKAVQTGGPSGGALANKDLDVAI 306

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            DY+ L    S +G+  ++VMD    ++        F   E+CG+CTPCR G+  +  ++
Sbjct: 307 -DYESLAACKSIMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYEIL 365

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +R+ KG   + ++D L  +S+ I+   +C LG     PI   +  F    E  +D 
Sbjct: 366 DRITKGKGTRADLDRLKSLSEIIKDTALCGLGQTMPNPILSTMDTFANEYEAHVDD 421


>gi|330823665|ref|YP_004386968.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans K601]
 gi|329309037|gb|AEB83452.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans K601]
          Length = 633

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 217/369 (58%), Gaps = 17/369 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           RD ++  ++ SGLRG GGAGF  G KW  + +     P  + VN DE EPGT KDR  + 
Sbjct: 247 RDAVLAAMEDSGLRGLGGAGFPAGRKWRIVRE--QPAPRLMAVNIDEGEPGTFKDRTYLE 304

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            +PH  +EG ++A+  +G    ++Y+R E+   R  LQ A+ E  A       +      
Sbjct: 305 RDPHRFLEGLLVAALVVGTEACYVYLRDEYHGCRAILQQALAELRADPPCALPA------ 358

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I++  GAGAYICGEE+A++ES+EG++G+PR++PP+ A VGL+G PT  +N E++  V  
Sbjct: 359 -IVLRRGAGAYICGEESAMIESIEGRRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRD 417

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I++ G  W++GFGR   RG + FS+SG V  P        IT  EL++++CGG+  G + 
Sbjct: 418 IVQHGPQWFAGFGRHGRRGLRSFSVSGRVKEPGVKLAPAGITLRELVDEYCGGMAEGHE- 476

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA ++    +D+D L+  G  +G+AAVIV+ R+     A   +  F
Sbjct: 477 LYAYLPGGASGGILPA-RLADVPLDFDTLQPYGCFIGSAAVIVLGRNDRARDAALNVMRF 535

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           + HESCGQCTPCR GT    R+M+      A   + D L +++  +   +IC LG AA  
Sbjct: 536 FAHESCGQCTPCRVGTDKAARLMQ------APVWDGDTLDDLALVMADASICGLGQAAPN 589

Query: 400 PIQGLIKNF 408
           PI+ + K F
Sbjct: 590 PIRCMHKYF 598


>gi|297618250|ref|YP_003703409.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
 gi|297146087|gb|ADI02844.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
          Length = 605

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 156/404 (38%), Positives = 233/404 (57%), Gaps = 11/404 (2%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           N+  +   ++ D ++R  +  + K+L+    + +I+EV+ SGLRGRGGAGF TG+KW   
Sbjct: 130 NIGEIDPANIQDYIARDGYQALAKVLKSMSPEQVIDEVQRSGLRGRGGAGFPTGLKW--- 186

Query: 70  PKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            K C+ +   P Y+V N DE +PG   DR IM  +PH++IEG +I ++A+GA   FIYVR
Sbjct: 187 -KACASQAAEPRYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMIIGAYAVGAAAGFIYVR 245

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+     +L  A+++   SG LG N    G+  DI +  G GA++CGEETALL S+EG 
Sbjct: 246 DEYDLAVVNLGRAIEDARRSGYLGDNILGSGFSFDIEIVRGGGAFVCGEETALLASIEGN 305

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PR K  +P   GL+G PT +NNVES A VP I+ RGA  ++  G   ++GTK+FS+ 
Sbjct: 306 VGEPRDKYVYPTEKGLWGQPTVINNVESWANVPVIINRGADEWARVGTATSKGTKVFSLV 365

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V     VE  M  T  E+I    GGI  G     AV  GG S  C+PA  +   + D+
Sbjct: 366 GKVYNTGLVEVPMGTTLREIIFDIGGGIPNG-RQFKAVQTGGPSGGCIPASLIDLPV-DF 423

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L  +GS +G+  +IVMD  T +++       F   ESCG+C PCREG   M+ ++ R+
Sbjct: 424 DSLTSVGSMMGSGGMIVMDDRTCMVEVARYYLNFLAGESCGKCVPCREGIRRMLEILTRI 483

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
                   ++++L  + + ++  ++C LG  A  P+   ++ FR
Sbjct: 484 CNAQGHPEDLEILSSLGETLQVASLCGLGKTAPNPVLSTLRYFR 527


>gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 631

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 151/387 (39%), Positives = 227/387 (58%), Gaps = 8/387 (2%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           I E   D ++  +  SGLRGRGG GF TG KWSF     +D+  Y++ NADE +PG   D
Sbjct: 182 ITEMSADDVVKLIIDSGLRGRGGGGFPTGKKWSFAKAYDADQ-KYIICNADEGDPGAFMD 240

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-- 152
           R I+  +PH+++E   IA +AIGA    IY+R E+      L+ A+D+    G+LG+N  
Sbjct: 241 RSILEGDPHSVLEAMAIAGYAIGASKGVIYIRAEYPLAVSRLKTAIDQALECGVLGNNIL 300

Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            S+  +++DI   +GAGA++CGEETAL+ S+EG +G+P  KPPFPA  GL+  PT VNNV
Sbjct: 301 GSEFSFNIDI--RYGAGAFVCGEETALIHSVEGCRGEPTNKPPFPAESGLWDKPTCVNNV 358

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++A +P I+  GA WYS  G   ++GTK+F+++G +N    VE  M  T  E+I    G
Sbjct: 359 ETLANIPAIINNGAEWYSSIGTATSKGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGG 418

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           GI+ G     +V  GG S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++ 
Sbjct: 419 GIKNGR-KFKSVQTGGPSGGCIPASNLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVD 476

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
                  F   ESCG+CTPCR G   ++ ++ ++  G   + +++ L E+++ I+  ++C
Sbjct: 477 IAKFYLEFTVEESCGKCTPCRIGNKRLLEILTKITNGQGTEDDLEKLKELAQTIKDTSLC 536

Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            LG  A  PI   +K F    E  + +
Sbjct: 537 GLGQTAPNPILSTMKYFADEYEAHVKE 563


>gi|319764060|ref|YP_004127997.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Alicycliphilus denitrificans BC]
 gi|317118621|gb|ADV01110.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans BC]
          Length = 633

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 217/369 (58%), Gaps = 17/369 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           RD ++  ++ SGLRG GGAGF  G KW  + +     P  + VN DE EPGT KDR  + 
Sbjct: 247 RDTVLAAMEDSGLRGLGGAGFPAGRKWRIVRE--QPAPRLMAVNIDEGEPGTFKDRTYLE 304

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            +PH  +EG ++A+  +G    ++Y+R E+   R  LQ A+ E  A       +      
Sbjct: 305 RDPHRFLEGLLVAALVVGTEACYVYLRDEYHGCRAILQQALAELRADPPCALPA------ 358

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I++  GAGAYICGEE+A++ES+EG++G+PR++PP+ A VGL+G PT  +N E++  V  
Sbjct: 359 -IVLRRGAGAYICGEESAMIESIEGRRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRD 417

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I++ G  W++GFGR   RG + FS+SG V  P        IT  EL++++CGG+  G + 
Sbjct: 418 IVQHGPQWFAGFGRHGRRGLRSFSVSGRVKEPGVKLAPAGITLRELVDEYCGGMAEGHE- 476

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA ++    +D+D L+  G  +G+AAVIV+ R+     A   +  F
Sbjct: 477 LYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGSAAVIVLGRNDRARDAALNVMRF 535

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           + HESCGQCTPCR GT    R+M+      A   + D L +++  +   +IC LG AA  
Sbjct: 536 FAHESCGQCTPCRVGTDKAARLMQ------APVWDGDTLDDLALVMADASICGLGQAAPN 589

Query: 400 PIQGLIKNF 408
           PI+ + K F
Sbjct: 590 PIRCMHKYF 598


>gi|313673509|ref|YP_004051620.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940265|gb|ADR19457.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 536

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 241/399 (60%), Gaps = 6/399 (1%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           ++ G+   +  + E   D +INEV  SGLRGRGG G+ TG+KWS + K+ S    Y+V N
Sbjct: 129 LNEGYKAFLKCLNELSPDEVINEVIKSGLRGRGGGGYPTGLKWSTVGKIQSPI-KYVVCN 187

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADE +PG   DR I+  +PH +IEG +IA++A+GA+  ++YVR E+    + L+ A+   
Sbjct: 188 ADEGDPGAFMDRAILESDPHKVIEGMLIAAYAVGANRGYVYVRAEYPLAIKRLKTAIKNA 247

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
               LLG+N +   ++ ++ V  GAGAY+CGEETAL+ S+EGKKG PR +PP+PA  G+ 
Sbjct: 248 ERFNLLGANIAGTTFNFNLEVRLGAGAYVCGEETALIASIEGKKGTPRPRPPYPAESGIK 307

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
             PT +NNVE+ A + TI+  G+ W++  G + ++GTK+F++SG++     VE  M I  
Sbjct: 308 NYPTLINNVETYANISTIINNGSEWFASIGTDKSKGTKVFALSGNIKNTGLVEVPMGIKL 367

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            +LI +  GGI    +   AV  GG S  C+P+  +  ++ DY+ L  +GS +G+  +IV
Sbjct: 368 YDLIFEIGGGIPNDKE-FKAVQTGGPSGGCIPSEYLNTSV-DYESLTHLGSIMGSGGMIV 425

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           MD +T ++        F K ESCG+C PCR GT  +  +++++ KG   +R++  + +++
Sbjct: 426 MDENTCMVDMAKFFIDFCKSESCGKCAPCRNGTVQLYEILDKITKGEGNERDLITMIKIA 485

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
             ++  ++C LG +A  P+    K F+    E +   HR
Sbjct: 486 NTMKKTSLCGLGQSAPNPVLSAFKYFKDEFYEHV--LHR 522


>gi|302037260|ref|YP_003797582.1| formate dehydrogenase subunit beta [Candidatus Nitrospira defluvii]
 gi|300605324|emb|CBK41657.1| Formate dehydrogenase, beta subunit [Candidatus Nitrospira
           defluvii]
          Length = 498

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 152/409 (37%), Positives = 225/409 (55%), Gaps = 7/409 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R  F N    +  +L +  +RG    ++  L  G D II E++ S LRGRGGA 
Sbjct: 86  FLAQQTRFTFANFGETEPLALDEYQARGGLSGLETALRIGPDAIIEELRVSQLRGRGGAA 145

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F    KW    +  +D   Y+V NADE + GT  DR I+  +P  L+EG +I + AIGA 
Sbjct: 146 FPVWNKWKVAQQARADD-KYVVANADEGDAGTYCDRMILEGDPFRLLEGMLICARAIGAG 204

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             ++Y R E+    ++L+AA+ +   + LL  +   G    I V  GAG+Y+CGEETALL
Sbjct: 205 RGYVYCRQEYPAAAKTLRAAIQKADEAELLELD---GEPFPIEVVEGAGSYVCGEETALL 261

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R +PP+PA  GLYG PT V+NV + A +P IL RG +W++  G + +RGT
Sbjct: 262 ESLEGKRGVVRARPPYPAQSGLYGRPTIVSNVLTFASIPNILSRGGAWHAALGTKQSRGT 321

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               + G V +P  VE    ++  +++E+  GG+  G     AV  GG      PA QM 
Sbjct: 322 MALQLGGRVKHPGLVEVPFGLSLHQVLEQFGGGMAPG-SRFKAVQVGGPLGSLFPASQMD 380

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             I  YD   + G+ LG   ++V D  TD++        F   ESCG+CTPCR G+    
Sbjct: 381 IPIC-YDAFAKAGAVLGHGGIVVYDHETDMVDLARHFMAFTADESCGKCTPCRIGSVRGR 439

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            ++ER+  G     ++ LL+++   ++  ++CALG  A +P+   I++F
Sbjct: 440 EILERIQSGSGTIEDLALLHDLGDTMKVASLCALGGRAPYPVLTAIEHF 488


>gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 626

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 234/398 (58%), Gaps = 6/398 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +S+ + ++   +  V+K L +   + +++E+  S LRGRGG GF TG KW  + +  
Sbjct: 154 INAESIEEYLAADGYTAVEKALFDMTPEEVVDEISESYLRGRGGGGFQTGKKWCQVLQQ- 212

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +++  Y+V N DE +PG   DR +M  +PH +IEG +IA  A  A   +IYVR E+    
Sbjct: 213 AEKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGIATKASYGYIYVRAEYPLAV 272

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           + LQ A+D+    GLLG N    G+D D+ +  GAGA++CGE +AL  S+EG +G PR+K
Sbjct: 273 KRLQMAIDQATKVGLLGKNILNSGFDFDLHISQGAGAFVCGEGSALTASIEGNRGMPRVK 332

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PP     GL+  PT +NNVE+   VP+I+ +G+ WY   G E N GTK F+++G+V +  
Sbjct: 333 PPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNYGTKAFALTGNVKHTG 392

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEM 311
            +E  M     E+I    GG++ G     AV  GG S  CL  G+    + +D+D LK++
Sbjct: 393 LIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGENHLELPLDFDSLKKV 450

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  ++VM+  + +++       F ++ESCG+C PCREGT  M+ ++  +V+G   
Sbjct: 451 GAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTKRMLEILTDIVEGRGT 510

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
              +D+L E+S  I    +C LG +A+ P++  +K FR
Sbjct: 511 LEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFR 548


>gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 626

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 234/398 (58%), Gaps = 6/398 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +S+ + ++   +  V K L +   + +++E+  S LRGRGG GF TG KWS + +  
Sbjct: 154 INAESIEEYLAADGYTAVAKALFDMTPEEVVDEISESYLRGRGGGGFQTGRKWSQVLQQ- 212

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +++  Y+V N DE +PG   DR +M  +PH +IEG +IA  A  A+  +IYVR E+    
Sbjct: 213 AEKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGVATKANYGYIYVRAEYPLAV 272

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           + LQ A+D+    G LG N    G+D D+ +  GAGA++CGE +AL  S+EG +G PR+K
Sbjct: 273 KRLQMAIDQATKVGFLGKNILNSGFDFDLHISQGAGAFVCGEGSALTASIEGNRGMPRVK 332

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PP     GL+  PT +NNVE+   VP+I+ +G+ WY   G E N GTK F+++G+V +  
Sbjct: 333 PPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNYGTKAFALTGNVKHTG 392

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEM 311
            +E  M     E+I    GG++ G     AV  GG S  CL  G+    + +D+D LK++
Sbjct: 393 LIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGENHLELPLDFDSLKKV 450

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  ++VM+  + +++       F ++ESCG+C PCREGT  M+ ++  +V+G   
Sbjct: 451 GAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTKRMLEILTDIVEGRGT 510

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
              +D+L E+S  I    +C LG +A+ P++  +K FR
Sbjct: 511 LEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFR 548


>gi|147669306|ref|YP_001214124.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|146270254|gb|ABQ17246.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
          Length = 623

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 159/413 (38%), Positives = 240/413 (58%), Gaps = 5/413 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N   +   S+ D ++ G + ++ K +   + D I+ E+  SGLRGRGG GF TG KW
Sbjct: 144 VFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGGGFPTGWKW 203

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               +   D   Y++ N DE +PG   DR +M   PH++IEG +I ++AIG+H A+IY+R
Sbjct: 204 KSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGSHEAYIYIR 262

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    +    A+ +    GLLG N    G+ + I ++ G GA++CGE TAL+ SLEGK
Sbjct: 263 DEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTALMASLEGK 322

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PR K    +  GLY  PTT+NNVE+ A +P I+ +GA W++  G   ++GTK+FS+ 
Sbjct: 323 VGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSKGTKIFSLV 382

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    +E  M IT  E++    GGI  G     A+  GG S  CLP   M    +D+
Sbjct: 383 GKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPE-SMLDLPVDF 440

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L + GS +G+ A+IVMD    +++       F + ESCG+C PCREG   M +++E++
Sbjct: 441 DELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKRMRQILEKI 500

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            KG  ++ +I+ L ++S+ I+  ++CALG +A  P+   IK FR   E  I Q
Sbjct: 501 TKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIRQ 553


>gi|289432572|ref|YP_003462445.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|288946292|gb|ADC73989.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 623

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 159/413 (38%), Positives = 240/413 (58%), Gaps = 5/413 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N   +   S+ D ++ G + ++ K +   + D I+ E+  SGLRGRGG GF TG KW
Sbjct: 144 VFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGGGFPTGWKW 203

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               +   D   Y++ N DE +PG   DR +M   PH++IEG +I ++AIG+H A+IY+R
Sbjct: 204 KSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGSHEAYIYIR 262

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    +    A+ +    GLLG N    G+ + I ++ G GA++CGE TAL+ SLEGK
Sbjct: 263 DEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTALMASLEGK 322

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PR K    +  GLY  PTT+NNVE+ A +P I+ +GA W++  G   ++GTK+FS+ 
Sbjct: 323 VGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSKGTKIFSLV 382

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    +E  M IT  E++    GGI  G     A+  GG S  CLP   M    +D+
Sbjct: 383 GKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPE-SMLDLPVDF 440

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L + GS +G+ A+IVMD    +++       F + ESCG+C PCREG   M +++E++
Sbjct: 441 DELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKRMRQILEKI 500

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            KG  ++ +I+ L ++S+ I+  ++CALG +A  P+   IK FR   E  I Q
Sbjct: 501 TKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIRQ 553


>gi|73748525|ref|YP_307764.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1]
 gi|73660241|emb|CAI82848.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1]
          Length = 623

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/413 (38%), Positives = 240/413 (58%), Gaps = 5/413 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N   +   S+ D ++ G + ++ K +   + D I+ E+  SGLRGRGG GF TG KW
Sbjct: 144 VFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGGGFPTGWKW 203

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               +   D   Y++ N DE +PG   DR +M   PH++IEG +I ++AIG+H A+IY+R
Sbjct: 204 KSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGSHEAYIYIR 262

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    +    A+ +    GLLG N    G+ + I ++ G GA++CGE TAL+ SLEGK
Sbjct: 263 DEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTALMASLEGK 322

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PR K    +  GLY  PTT+NNVE+ A +P I+ +GA W++  G   ++GTK+FS+ 
Sbjct: 323 VGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSKGTKIFSLV 382

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    +E  M IT  E++    GGI  G     A+  GG S  CLP   M    +D+
Sbjct: 383 GKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPE-SMLDLPVDF 440

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L + GS +G+ A+IVMD    +++       F + ESCG+C PCREG   M +++E++
Sbjct: 441 DELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKRMRQILEKI 500

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            KG  ++ +I+ L ++S+ I+  ++CALG +A  P+   IK FR   E  I Q
Sbjct: 501 TKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIRQ 553


>gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus torques L2-14]
          Length = 622

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 155/411 (37%), Positives = 237/411 (57%), Gaps = 5/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + D+M+ G +++ +K + E   + +I  V  +GLRGRGGAGF  G KW
Sbjct: 144 VLRNCGHIDAEHIEDAMAVGAYESFEKAVFEMTPEAVIKTVTDAGLRGRGGAGFPAGRKW 203

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S +     ++  Y+V N DE +PG   DR +M  +PH +IEG ++A++A+ A   +IYVR
Sbjct: 204 SQVASQ-PEKIRYVVCNGDEGDPGAFMDRSVMEGDPHRMIEGMMLAAYAVQAQEGYIYVR 262

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+      LQ A+ +    GLLG N    G+   + ++ GAGA++CGE +AL  S+EGK
Sbjct: 263 AEYPLAVRRLQIAIAQAEEKGLLGDNILGTGFSFKLHINRGAGAFVCGEGSALTASIEGK 322

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR+KPP     GL+  PT +NNVE+ A +P I++ GA WYS  G   + GTK F+++
Sbjct: 323 RGMPRVKPPRTVEQGLWEKPTVLNNVETYANIPMIIKNGADWYSRIGTPQSPGTKAFALT 382

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G+V     +E  M I+  E+I    GGI+       AV  GG S  CL   Q+    MD+
Sbjct: 383 GNVKNTGLIEVPMGISLREIIFDIGGGIKDD-KGFKAVQIGGPSGGCLVESQLDSK-MDF 440

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L ++G+ +G+  ++VMD  T +++       F + ESCG+C PCREGT  M+ ++ER+
Sbjct: 441 DSLSKIGAMIGSGGLVVMDEDTCMVEVARFFMNFTQRESCGKCVPCREGTKRMLEILERI 500

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V G  +  ++D L E++  IE   +C LG +A  P+   I  FR   EE I
Sbjct: 501 VAGNGEMSDLDELEELADMIENTALCGLGKSAPKPVVSTIHAFRKEYEEHI 551


>gi|300310807|ref|YP_003774899.1| NAD-dependent formate dehydrogenase beta subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300073592|gb|ADJ62991.1| NAD-dependent formate dehydrogenase beta subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 520

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 154/410 (37%), Positives = 229/410 (55%), Gaps = 5/410 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q+R+ F  +  +   SL D ++   +  +   L K  + I+ E+ ASGLRGRGGA 
Sbjct: 102 FLKNQERLTFARVGIIDPLSLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAA 161

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +  S +  Y+V NADE + GT  DR IM  +P TLIEG  IA  A+GA 
Sbjct: 162 FPTGIKWQTVLRAQSAQ-KYVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGAT 220

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVR E+     +L+ A+   +A G LG +    G    + V  GAGAYICGEETA+
Sbjct: 221 EGYIYVRSEYPHSIATLEQAIAIAHAQGYLGDDILGSGKSFRLEVRKGAGAYICGEETAM 280

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NN+ S+A VP IL RGA +Y  FG   + G
Sbjct: 281 LESLEGKRGVVRAKPPLPAIEGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHG 340

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE++  +T  +L+E   GG   G   + AV  GG     LP  Q 
Sbjct: 341 TLPFQLAGNIRQGGLVEKAFGLTLRQLLEDFGGGSASGRP-IRAVQMGGPLGAYLPQSQF 399

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   ++  D S D+ +       F   ESCG+CTPCR G+   
Sbjct: 400 D-TPLDYEAFAAIGAMIGHGGLVAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRG 458

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + V+++++    + ++I LL  +   +   ++CA+G    +P+   + +F
Sbjct: 459 VEVIDKIIANDDRAQQIHLLKSLCDTMVNGSLCAMGGMTPFPVLSALNHF 508


>gi|51246061|ref|YP_065945.1| NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea
           psychrophila LSv54]
 gi|50877098|emb|CAG36938.1| probable NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea
           psychrophila LSv54]
          Length = 550

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 148/389 (38%), Positives = 221/389 (56%), Gaps = 12/389 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+EV ASGLRGRGGAG+ TG+KWS + K   +   Y+V NADE +PG   DR ++  +P
Sbjct: 160 VIDEVTASGLRGRGGAGYPTGLKWSTVSKAI-NAVKYVVCNADEGDPGAFMDRSVLESDP 218

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDV 159
           H +IEG  I ++A+GA    IYVR E+    + LQ A+ +    G+LG+   NS   +D+
Sbjct: 219 HRVIEGMAIGAYAVGARQGIIYVRAEYPLAVKRLQKAITQAKRIGILGNGIFNSDFQFDI 278

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I    GAGA++CGEETAL+ S+EG+ G+P  +PP+PA  GL  CPT +NNVE+ A +  
Sbjct: 279 QI--RLGAGAFVCGEETALIASIEGRVGKPCPRPPYPAESGLKQCPTLINNVETFANIAP 336

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+R G  W +  G   ++GTK+F+++G V     +E +M  T  E++    GG       
Sbjct: 337 IIRNGGQWLASIGTSKSKGTKVFALAGKVQQKGLIEVAMGTTLGEIVFDI-GGGIADGGT 395

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+P  Q     +DY+ L ++GS +G+  +IVMD+ + ++        F
Sbjct: 396 FKAVQTGGPSGGCIPK-QFLDMGVDYESLAKVGSIMGSGGMIVMDQGSCMVDVARFFVEF 454

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+C PCR GT  M  V+ ++  G  +  ++ LL E+   ++   +C LG A+  
Sbjct: 455 CMSESCGKCVPCRVGTRQMHDVLGKIASGRGEASDLTLLEELCDLVKNTALCGLGQASVN 514

Query: 400 PIQGLIKNFR----PLIEERIDQYHRCNF 424
           PI   +  F+      IEE+    H C  
Sbjct: 515 PILSTLCYFKDEYLAHIEEKRCIAHSCTL 543


>gi|229550120|ref|ZP_04438845.1| NADH dehydrogenase (quinone) [Enterococcus faecalis ATCC 29200]
 gi|307277473|ref|ZP_07558565.1| HymB family protein [Enterococcus faecalis TX2134]
 gi|312952393|ref|ZP_07771268.1| HymB family protein [Enterococcus faecalis TX0102]
 gi|229304706|gb|EEN70702.1| NADH dehydrogenase (quinone) [Enterococcus faecalis ATCC 29200]
 gi|306505738|gb|EFM74916.1| HymB family protein [Enterococcus faecalis TX2134]
 gi|310629777|gb|EFQ13060.1| HymB family protein [Enterococcus faecalis TX0102]
 gi|315153356|gb|EFT97372.1| HymB family protein [Enterococcus faecalis TX0031]
 gi|315155867|gb|EFT99883.1| HymB family protein [Enterococcus faecalis TX0043]
 gi|315157966|gb|EFU01983.1| HymB family protein [Enterococcus faecalis TX0312]
          Length = 432

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK GQPR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGQPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPIILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 625

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 152/405 (37%), Positives = 238/405 (58%), Gaps = 7/405 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + D +  G +  + K+L K   + + +E+  SGLRGRGGAGF TG KW
Sbjct: 147 VLKNCGKIDAEDIRDYIVCGGYKALAKVLMKMTPEEVCDEILKSGLRGRGGAGFPTGKKW 206

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             +    +D   Y+V N DE +PG   DR +M  +PH ++EG +IA +A GA   +IYVR
Sbjct: 207 KQVLMQDAD-IKYVVCNGDEGDPGAFMDRSVMEGDPHQMLEGMIIAGYASGAREGYIYVR 265

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEG 184
           GE+    + LQ A+ + +  G LG N  LG  +D DI ++ GAGA++CGE +AL +S+EG
Sbjct: 266 GEYPLAVKRLQVAIQQAHEWGFLGKNI-LGSNFDFDIHINKGAGAFVCGEGSALTQSIEG 324

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
            +G PR +PP     GL+G PT +NNVE+ A VP I+  GA WY   G   + GTK+F++
Sbjct: 325 FRGMPRPRPPRTVEKGLFGKPTVLNNVETFANVPLIISNGADWYLSIGTPGSPGTKIFAL 384

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G++N    +E  M IT  ++I     GIR G     AV  GG S  CL    +  + MD
Sbjct: 385 TGNINNTGLIEVPMGITLRQIIFDIGAGIRNG-KKFKAVQIGGPSGGCLTEEHLDIS-MD 442

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D L+  G+ +G+  ++V+D  + +++       F + ESCG+C PCREGT  M+ ++E+
Sbjct: 443 FDSLEAAGAMVGSGGLVVLDEDSCMVEVARFFMDFTQRESCGKCVPCREGTKRMLEILEK 502

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +V G A  +++ LL E+++ ++  ++C LG  A  P+   +K F+
Sbjct: 503 IVSGNANIKDLQLLEELAEVVKIGSLCGLGKTAPNPVLTTMKYFK 547


>gi|160936128|ref|ZP_02083501.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440938|gb|EDP18662.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
          Length = 574

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 161/421 (38%), Positives = 239/421 (56%), Gaps = 7/421 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  +++ + +  G +  + K+L E   D +I  +  +GLRGRGGAGF T
Sbjct: 92  QHRIALRNCGVINPENIEEYIGTGGYQALGKVLTEMTPDDVIQTLLDAGLRGRGGAGFPT 151

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW    +  +D+  Y+  NADE +PG   DR ++  +PH L+E   IA +AIG++  +
Sbjct: 152 GLKWKLCKQNDADQ-KYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGSNQGY 210

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    E L+ A+ +     LLG N    G+D DI +  GAGA++CGEETAL+ S
Sbjct: 211 IYVRAEYPIAVERLKIAIQQAREMELLGKNIFGTGFDFDIDLRLGAGAFVCGEETALMTS 270

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G+PR +PPFPA  GL+G P+ +NNVE+ A +P I+  G  W++  G E ++GTK+
Sbjct: 271 IEGKRGEPRPRPPFPAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSKGTKV 330

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F++ G +N    VE  M  T   +IE+  GGI  G     A   GG S  C+PA      
Sbjct: 331 FALGGKINNTGLVEVPMGTTLRTVIEEIGGGIPNG-KKFKAAQTGGPSGGCIPAEHFDIP 389

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I DYD L  +GS +G+  +IVMD    ++        F   ESCG+CT CR GT  M+ +
Sbjct: 390 I-DYDNLISIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTACRIGTKRMVEI 448

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + ++ KG A   ++D L E+   ++  ++C LG  A  P+   +  FR   E  I +  R
Sbjct: 449 LTKITKGQAVMEDLDKLEELCHYVKANSLCGLGQTAPNPVLSTLHFFRDEYEAHIKE-KR 507

Query: 422 C 422
           C
Sbjct: 508 C 508


>gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 573

 Score =  263 bits (671), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 157/411 (38%), Positives = 244/411 (59%), Gaps = 8/411 (1%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGF 60
           + Q RI  +N   +  + + + ++R  +  + K +LE   + +++EVK SGLRGRGGAGF
Sbjct: 89  SKQHRIVLSNCGYIDPEKIEEYIARDGYIALGKALLEMTPEEVLDEVKKSGLRGRGGAGF 148

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  K   ++  Y++ NADE +PG   DR  +  +PH++IEG  + ++AIGA  
Sbjct: 149 PTGLKWEFARKAPGNK-KYVICNADEGDPGAFMDRSTLEGDPHSVIEGMALGAYAIGADE 207

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETAL 178
            +IY R E+    + L+ A+ +    GLLG N  +G +    +H   GAGA++CGEETAL
Sbjct: 208 GYIYCRAEYPLAIKRLKIAIAQAEEMGLLGDNI-MGTNFSFHLHLKEGAGAFVCGEETAL 266

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG++G PR +PPFPA  GL+G PT +NNVE+ A VP I+  GA W++  G E ++G
Sbjct: 267 MASIEGRRGMPRPRPPFPAQHGLWGKPTNINNVETWANVPKIILNGADWFASMGTEKSKG 326

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +     +E  M IT  E+I +  GGI  G +   AV  GG S  CL    +
Sbjct: 327 TKIFALTGKITNTGLIEVPMGITIKEIIYELGGGILNGKE-FKAVQIGGPSGGCLTKEHL 385

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              I DY+ L   G+ +G+  ++VMD  T ++        F + ESCG+C PCREGT  M
Sbjct: 386 DLPI-DYESLTGAGAIMGSGGLVVMDEDTCMVDVARFFLEFTQRESCGKCVPCREGTKQM 444

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++E++ KG     ++  L E++  ++  ++C LG  A  P+   I+ FR
Sbjct: 445 LLMLEKICKGEGTLEDLSKLEELAYMVKETSLCGLGQTAPNPVITTIRYFR 495


>gi|255972897|ref|ZP_05423483.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T1]
 gi|257422721|ref|ZP_05599711.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus
           faecalis X98]
 gi|255963915|gb|EET96391.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T1]
 gi|257164545|gb|EEU94505.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus
           faecalis X98]
          Length = 417

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 16  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 74

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 75  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 134

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK GQPR+KPP  A+VGLY  PT
Sbjct: 135 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGQPRVKPPHLADVGLYLQPT 194

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 195 LVNNVESFASVPIILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 254

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 255 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 313

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 314 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 373

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 374 VTRLSACGLGQSVANPMKSALALF 397


>gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
 gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
          Length = 595

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 153/403 (37%), Positives = 237/403 (58%), Gaps = 5/403 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +++ + ++R  +  +++ L +   + IINE+K +GLRGRGGAGF T MKW
Sbjct: 117 VLRNCGVINPENIDEYIARDGYKALERALFDMKPEDIINELKTAGLRGRGGAGFPTWMKW 176

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           +F  +   D   Y+V NADE +PG   DR  +  +PH++IE   IA  A+GAH  +IY+R
Sbjct: 177 NFTKQAAGDV-KYIVCNADEGDPGAYMDRSTLEGDPHSIIEAMTIAGIAVGAHQGYIYIR 235

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + LQ A+++    GLLG +    G+D DI +  GAGA++CGEETALL S+EG+
Sbjct: 236 AEYPLAIKRLQIAMEQSRGYGLLGKDILGSGFDFDIEIRLGAGAFVCGEETALLASIEGE 295

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G P+ +PPFPA  GL+GCPT +NNVE+ A VP I+ RG  W++  G E+++GTK+F+++
Sbjct: 296 RGMPKPRPPFPATKGLWGCPTVINNVETWANVPVIISRGGDWFAKIGTEDSKGTKVFALT 355

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G +     VE  M  T  E++    GGI G      AV  GG S   + A  +   I DY
Sbjct: 356 GKIRNSGLVEVPMGTTLREIVYDIGGGIPGN-KAFKAVQTGGPSGGVITADYLDTPI-DY 413

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
             L+++GS +G+  +IVMD    I+        F   ESCG+C PCR G   +  +++R+
Sbjct: 414 SQLQKLGSIMGSGGMIVMDEDDCIVDVAKFYLGFTVEESCGKCAPCRVGGRTLYNILDRI 473

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            KG  +  +I+ L  + K ++  ++C LG  +  P+   +  F
Sbjct: 474 TKGEGEMEDIERLKTIGKAMQKASLCGLGQTSPNPVMSTLHYF 516


>gi|288941582|ref|YP_003443822.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180]
 gi|288896954|gb|ADC62790.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180]
          Length = 538

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 153/421 (36%), Positives = 244/421 (57%), Gaps = 10/421 (2%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q RI     GL    SL   ++ G +  + + L E     ++ EV  SGLRGRGG 
Sbjct: 119 FFSRQQRIVLEHSGLIDPDSLRGYIAVGGYAALVRALTEMTPADVLREVTTSGLRGRGGG 178

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KWS + K+   +  Y+V NADE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 179 GYPTGLKWSTIAKMPPGQ-KYVVCNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGA 237

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEE 175
              ++YVR E+    E L+ A+ +   +G LG+   +++  ++V+I    GAGA++CGEE
Sbjct: 238 SKGYVYVRAEYPLAVERLETAIRKAKRAGFLGAKVADTQFAFEVEI--RLGAGAFVCGEE 295

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ S+EG +GQPR +PP+PA  GL+GCPT +NNVE+ A +  I+R G  W++  G E 
Sbjct: 296 TALMASIEGLRGQPRPRPPYPAESGLWGCPTLINNVETFANIAPIIREGGDWFAAIGTEG 355

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           ++GTK+F+++G +     +E  M  +  ++IE   GGI  G     AV  GG S  C+P 
Sbjct: 356 SKGTKVFALAGKIKNTGLIEVPMGTSLRDIIEVIGGGIPDGR-AFKAVQTGGPSGGCIPE 414

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +   + DYD LK +G+ +G+  +IVMD ++ ++        F   ESCG+C PCR GT
Sbjct: 415 AHLDIPV-DYDSLKTLGTIMGSGGLIVMDETSCMVDVARFFMEFCMSESCGKCIPCRAGT 473

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             M  +++ L KG   + ++ LL ++   +   ++C LG  A  P+   ++ FR   E +
Sbjct: 474 WQMHALLDTLTKGRGTRADLALLEDLCDVVRATSLCGLGQTAPNPVLSTLRYFRDEYEAK 533

Query: 416 I 416
           +
Sbjct: 534 L 534


>gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 626

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 154/409 (37%), Positives = 241/409 (58%), Gaps = 10/409 (2%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62
           Q RI     GL   + +++ ++   ++ + ++L +   D +I+E+K SGLRGRGG GF T
Sbjct: 144 QKRIALRNCGLINPEDITEYIAMNGYEALGRVLTQMTPDSVIDEIKKSGLRGRGGGGFPT 203

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW    K  SD   +++ NADE +PG   DR I+  +P++++E   IA + IGA+  +
Sbjct: 204 GIKWEMTKKSQSDT-KFIICNADEGDPGAFMDRSILEGDPNSVLEAMAIAGYCIGANKGY 262

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179
           IY+R E+      L+ A+ + Y  GLLG N   S   + +D+   +GAGA+ICGEETAL+
Sbjct: 263 IYIRAEYPLAINRLRIAIKQAYDLGLLGDNILGSSFSFHIDL--KYGAGAFICGEETALI 320

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG +G+P +KPPFP+ +GL+  PT +NNVE++A +  I+  G+ W+S  G E ++GT
Sbjct: 321 NSIEGGRGEPTVKPPFPSQIGLWKKPTNINNVETLANIAPIILNGSQWFSSIGTEKSKGT 380

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F+++G +N    VE  M IT  E+I    GGIRGG     AV  GG S  C+PA  + 
Sbjct: 381 KVFALAGKINNVGLVEVPMGITLREIIYDLGGGIRGG-KKFKAVQTGGPSGGCIPADHLD 439

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             I DY+ L E+GS +G+  +IVMD    ++        F   ESCG+CT CR G   ++
Sbjct: 440 IPI-DYESLTEIGSMMGSGGMIVMDEDNCMVNIAKFYLQFSVDESCGRCTACRIGNKRLL 498

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            ++E +  G      ++ L ++S  I+  ++C LG  +  P+   +K F
Sbjct: 499 EILENITNGKGTMEHLEGLKDLSYVIKDSSLCGLGQTSPNPVISTMKFF 547


>gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 598

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 156/405 (38%), Positives = 235/405 (58%), Gaps = 9/405 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +++ +++SR  +  + K L E  R  +I+E+K SGLRGRGG GF TG+KW
Sbjct: 121 VLRNCGFMDPENIEEAVSRDAYLALYKSLKEMSRQDVIDEIKISGLRGRGGGGFPTGLKW 180

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F      D+  Y+V NADE +PG   DR ++  +PH+++E   I  +AIG+    IY+R
Sbjct: 181 QFAFNKDVDK-KYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAICGYAIGSDEGLIYIR 239

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184
            E+      L+ A+ +    G+LG N   G D +  V   +GAGA++CGEETAL+ S+EG
Sbjct: 240 AEYPLAINRLKKAIKQANEYGVLGKNI-FGTDFNFKVRLKYGAGAFVCGEETALIHSMEG 298

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+G+P LKPPFPA  G +  PT VNNVE++A +P I+ +GA W+   G E + GTK+F++
Sbjct: 299 KRGEPTLKPPFPAEAGYWKKPTNVNNVETLANIPVIINKGAQWFKSIGTEKSPGTKVFAL 358

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V     +E  M  T  E+I    GGI        AV  GG S  CL    +   I D
Sbjct: 359 AGKVKNVGLIEVPMGTTLQEVIFDIGGGITKNR-KFKAVQTGGPSGGCLTEKDLNTPI-D 416

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVME 363
           +D LKE GS +G+  +IVMD   D + A+ +  + F   ESCG+CTPCR G   +  +++
Sbjct: 417 FDSLKEKGSMMGSGGMIVMDED-DCMVAVAKFYLGFTVEESCGKCTPCRIGNKRLYEILD 475

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++ KG     ++ LL ++SK I+  ++C LG  +  P+   + NF
Sbjct: 476 KITKGKGSVNDLHLLKDLSKTIKRASLCGLGKTSPNPVLSTLNNF 520


>gi|221632800|ref|YP_002522022.1| NAD-dependent formate dehydrogenase subunit beta [Thermomicrobium
           roseum DSM 5159]
 gi|221156040|gb|ACM05167.1| NAD-dependent formate dehydrogenase beta subunit [Thermomicrobium
           roseum DSM 5159]
          Length = 574

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 147/408 (36%), Positives = 229/408 (56%), Gaps = 6/408 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ D ++ G +    K L E   + +I EVKAS LRGRGGAGF TG+KW    +  + R
Sbjct: 155 ESIEDFIAIGGYRAFLKALFEMTPEEVIAEVKASNLRGRGGAGFPTGIKWESGRRTPA-R 213

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P Y+VVN+ E EP   KDR ++   PH ++EG +I  +A+   C + Y+ GE     +  
Sbjct: 214 PKYVVVNSHEGEPNVFKDRRLLESNPHLVLEGLLIGCYALETPCGYNYIGGEHALALQRF 273

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q AV++ Y  GLLG +    G+   + +  G GAYICGE +AL+ ++ G++GQPR KPP 
Sbjct: 274 QRAVEQAYELGLLGDDILGSGFSCHVRIRTGGGAYICGEGSALMYAIMGQRGQPRTKPPR 333

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
               GL+  PT +NN E+ A +P I++ G SWY+  G + + GTKL ++ G V Y    E
Sbjct: 334 SVEEGLWRRPTVLNNTETFASIPAIIQNGGSWYASLGTKESTGTKLVTMQGPVKYLGVAE 393

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               ++  ELI    GG+R G+  L  +  GG S   L   ++   I D++ L  +G+ +
Sbjct: 394 IEFGLSMRELIFDVFGGLREGY-RLKGIQTGGVSAGPLREDELDVPI-DFEALTPLGAMV 451

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+   +  D S   +     L  F ++ESCG+CTPCR GT  ++ +++R+  G  +  ++
Sbjct: 452 GSGGFVAFDESVCAVDFARYLVAFSRYESCGKCTPCRLGTPALVEILDRIRHGFGRPEDL 511

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           D++   SK+I   ++C LG  A  P+ G+++ FR    E I +  RC 
Sbjct: 512 DIIQYASKHIIELSLCGLGQVAPMPLLGMLERFRDEFIEHITE-RRCR 558


>gi|257082642|ref|ZP_05577003.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           E1Sol]
 gi|257085351|ref|ZP_05579712.1| NADH dehydrogenase [Enterococcus faecalis Fly1]
 gi|256990672|gb|EEU77974.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           E1Sol]
 gi|256993381|gb|EEU80683.1| NADH dehydrogenase [Enterococcus faecalis Fly1]
          Length = 432

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G  +L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YSEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|315160211|gb|EFU04228.1| HymB family protein [Enterococcus faecalis TX0645]
          Length = 432

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G  +L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|315145702|gb|EFT89718.1| HymB family protein [Enterococcus faecalis TX2141]
          Length = 432

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQTFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G  +L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|315147886|gb|EFT91902.1| HymB family protein [Enterococcus faecalis TX4244]
 gi|315150637|gb|EFT94653.1| HymB family protein [Enterococcus faecalis TX0012]
          Length = 432

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G  +L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|70733835|ref|YP_257475.1| formate dehydrogenase subunit beta [Pseudomonas fluorescens Pf-5]
 gi|68348134|gb|AAY95740.1| formate dehydrogenase, beta subunit [Pseudomonas fluorescens Pf-5]
          Length = 519

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 159/415 (38%), Positives = 233/415 (56%), Gaps = 14/415 (3%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q R+     G+ +  SL+D  + G ++ + + +  G +  +  V  SGLRGRGGA F
Sbjct: 98  LKNQQRLLFARAGITRPLSLADYRAHGGFEGLTRSIALGGEQTVAAVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
             G+KW    +   D P    Y+V NADE + GT  DR +M  +P  LIEG  IA  A+G
Sbjct: 158 PAGIKW----RTVRDTPPQQKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMAIAGLAVG 213

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEET 176
           A   +IYVR E+ +   +L+ A+D    +G LG+N+   G   D+ V  GAGAYICGEET
Sbjct: 214 ASYGYIYVRSEYPQAVATLREALDIARDAGYLGANAGGSGQAFDMEVRVGAGAYICGEET 273

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL+SLEGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA +Y  +G   +
Sbjct: 274 ALLDSLEGKRGIVRAKPPIPALQGLFGQPTLVHNVLTLASVPLILAKGAPFYRDYGMGRS 333

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GT  F ++G+V +   VE +  +T  EL+E + GG   G   L A   GG     +P  
Sbjct: 334 LGTMPFQLAGNVRHGGLVERAFGLTLRELVEGYGGGTASGR-PLKAAQVGGPLGAWVPPS 392

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           Q     +DY+    MG+ LG   V+V D S D+ +       F   ESCG+CTPCR G+ 
Sbjct: 393 QFD-TPLDYEAFAAMGAMLGHGGVVVADDSLDLARMARFALQFCAEESCGKCTPCRIGST 451

Query: 357 WMMRVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             + V++RL+    Q R  +   +L ++   ++  ++CALG   ++P+   +K+F
Sbjct: 452 RGVEVIDRLLAAPDQGRRDEQALILKDLCDTLQYGSLCALGGMTSYPVASALKHF 506


>gi|298293800|ref|YP_003695739.1| NADH dehydrogenase (quinone) [Starkeya novella DSM 506]
 gi|296930311|gb|ADH91120.1| NADH dehydrogenase (quinone) [Starkeya novella DSM 506]
          Length = 519

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 157/416 (37%), Positives = 225/416 (54%), Gaps = 17/416 (4%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   S +D  + G +  +++ L  G   II EVK SGLRGRGGAG
Sbjct: 98  FLAKQTRLTFARCGIIDPASYADYRAHGGYKGLERALALGPAEIIEEVKKSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +KW  +    +DR  Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA 
Sbjct: 158 FPTAIKWKTVADAKADR-KYIVCNADEGDSGTFADRMIMEGDPFELIEGMTIAGIAVGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y R E+     +++ A++   A G+LG N +   Y  D+ V  GAGAY+CGEETAL
Sbjct: 217 KGFVYTRSEYPHAIWAMEKAIEVARAHGMLGVNIAGSQYSFDMEVRMGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L+SLEGK+G  R KPP PA+ GL+  PT +NNV S+  VP IL  G  +Y+ FG   +RG
Sbjct: 277 LDSLEGKRGVVRAKPPLPAHKGLFQKPTVINNVLSLTAVPHILADGGEFYANFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI--PGGSSVPC---- 292
           T    I+G+V +    E +  IT  ELI    GG   G     A +  P G+ VP     
Sbjct: 337 TMPIQIAGNVKFGGLFETAFGITLGELINDIGGGTASGRPVKAAQVGGPLGAYVPTWQFD 396

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           LP         DY+      + +G   ++V D +TD+ K       F   ESCG+CTPCR
Sbjct: 397 LP--------FDYEAFAAKDALIGHGGIVVFDETTDLAKMARFAMEFCSVESCGKCTPCR 448

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            G+   + +M+R++ G   +  +  L ++ + ++  ++CALG    +P+   + +F
Sbjct: 449 IGSTRGVELMDRIMAGQRVEANLATLTDLCQTMKLGSLCALGGFTPYPVLSALNHF 504


>gi|217979755|ref|YP_002363902.1| NADH dehydrogenase (quinone) [Methylocella silvestris BL2]
 gi|217505131|gb|ACK52540.1| NADH dehydrogenase (quinone) [Methylocella silvestris BL2]
          Length = 516

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 148/391 (37%), Positives = 218/391 (55%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  +   W  + + +E G    I EV  SGLRGRGGAGF TG+KW  +    +DR  
Sbjct: 116 SLVDYAAHDGWKGLARAIEVGPAETIAEVTKSGLRGRGGAGFPTGVKWKTVADAPADR-R 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +   +P  LIEG  IA  A+GA   ++Y R E+    ++   
Sbjct: 175 YIVCNADEGDSGTFADRMMFEGDPFALIEGMAIAGVAVGATKGYVYCRSEYPHAVKTFNE 234

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+    A+G LG N    G+  ++ +  GAGAY+CGEETALL+SLEGK+G  R KPP PA
Sbjct: 235 AIVLARAAGYLGPNILGSGFAFELEMRVGAGAYVCGEETALLDSLEGKRGIVRAKPPLPA 294

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + GL+G PT +NNV S+  VP IL +G  +Y+ FG   +RGT    I+G+V +    E +
Sbjct: 295 HKGLFGRPTVINNVLSLVAVPHILAKGGEFYASFGMGRSRGTMPLQIAGNVRFGGLFETA 354

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +T  E++E   GG R G   + AV  GG     LP  Q      DY+   +  + +G 
Sbjct: 355 FGLTLGEIVEDIGGGTRSGRP-IRAVQCGGPLGAYLPVSQFD-TPFDYEAFSKKDALIGH 412

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ +       F   ESCG+CTPCR G+   +  ++R+  G+  +  I L
Sbjct: 413 GGIVVFDDTVDMAQMARFAMEFCAIESCGKCTPCRIGSTRGVETVDRIRAGVKVQENIAL 472

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++   ++  ++CALG  A +P+   +++F
Sbjct: 473 LEDLCNTMKFGSLCALGGFAPYPVTSALRHF 503


>gi|330809409|ref|YP_004353871.1| formate dehydrogenase beta subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377517|gb|AEA68867.1| Formate dehydrogenase beta subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 519

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 160/412 (38%), Positives = 227/412 (55%), Gaps = 8/412 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+ Q  SL D  +RG +  + + ++     ++  V  SGLRGRGGA F
Sbjct: 98  LKSQQRLLFARAGITQPLSLDDYRARGGFLGLARSIQMDGADVVASVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +      +  Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 158 PAGIKWRTVRDAVGAQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGIAVGATM 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L  A+     +G LG+N S  G   DI V  GAGAYICGEETALL
Sbjct: 217 GYIYVRSEYPAAISTLNEALRIARDAGYLGANVSGSGRAFDIEVRVGAGAYICGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA +Y  FG   + GT
Sbjct: 277 ESLEGKRGTVRAKPPLPAIQGLFGLPTLVHNVVTLASVPIILEKGAQFYRDFGMGRSLGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  ++  EL+E + GG   G   L A   GG     +P  Q  
Sbjct: 337 MPFQLAGNVRQGGLVERAFGLSLRELVEGYGGGTASGR-PLKAAQVGGPLGAWVPPAQFD 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    MG+ LG   V+V D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 396 -TPLDYEAFAAMGAMLGHGGVVVADDSLDMAQMARFALQFCAEESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++RL+      A++ +  LL ++   ++  ++CALG   ++P+   +K F
Sbjct: 455 EVVDRLIASTEAGARQEQALLLQDLCDTLQYGSLCALGGMTSYPVASALKYF 506


>gi|33600308|ref|NP_887868.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella
           bronchiseptica RB50]
 gi|33567907|emb|CAE31820.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella
           bronchiseptica RB50]
          Length = 526

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 231/410 (56%), Gaps = 6/410 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G    +++ L    + I++EV ASGLRGRGGA F
Sbjct: 105 LKHQERLTFARVGVIDPLSLQDYAAHGGLAGLNRALAMSAEQIVDEVSASGLRGRGGAAF 164

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    + R  Y+V NADE + GT  DR +M  +P++LIEG  IA  A+GA  
Sbjct: 165 PTGIKWKTVLTTPAPR-KYIVCNADEGDSGTFADRLLMEGDPYSLIEGMTIAGLAVGATY 223

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+ A+      G LG +    G   D+ V  GAGAYICGEET+LL
Sbjct: 224 GYIYVRSEYPHAIATLRQAIARAREVGWLGDDIHGSGQRFDLEVREGAGAYICGEETSLL 283

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VPTI+ RGA+ Y  FG   + GT
Sbjct: 284 ESLEGKRGVVRAKPPLPAIAGLFGLPTVINNVISLATVPTIMARGAAHYRDFGVGRSHGT 343

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE++  +T  +L+    GG   G   L AV  GG     LP  Q  
Sbjct: 344 LPFQLAGNLKHGGLVEKAFGLTLRDLLYGFGGGSASG-RPLRAVQVGGPLGAYLPESQWD 402

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + +G   ++  D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 403 -VPLDYEAYVQISAMVGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 461

Query: 360 RVMERLVKGIAQKRE-IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             ++++V G  Q+ + + LL ++   +   ++CALG  A +P+   + +F
Sbjct: 462 ETIDKIVAGGPQREQRVHLLRDLCDTMLAGSLCALGGMAPYPVLSALNHF 511


>gi|146277732|ref|YP_001167891.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025]
 gi|145555973|gb|ABP70586.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025]
          Length = 416

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 155/409 (37%), Positives = 223/409 (54%), Gaps = 15/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---D 75
           +L++  + G ++ V++        II+ V+A+ L GRGGAGF  G KW FMP+  +   D
Sbjct: 18  TLAEWRAEGGYEAVERARTMTPSEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGTSPGD 77

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YL+VN DE EPG  KDR ++   PH +IEG +I + A  A  A + +R E+     +
Sbjct: 78  GPSYLIVNGDEMEPGAFKDRFLLEAMPHQVIEGAIITARATHADEAIVLIRDEYRPGIAA 137

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           ++ A+ E   +GLLG       D+ I VH  AG YI GEETAL+ +LEG +  PR +PPF
Sbjct: 138 VEHAIHEARTAGLLG-------DLTIRVHPSAGRYIVGEETALITALEGHRAVPRKRPPF 190

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PTTVNNVE+I++VP IL  G   +    R    GTKL+ +SG V  P   E
Sbjct: 191 PAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRPGLFE 250

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  ELIE+  GG+ G    L A  PGG +       Q+    +D+  +   GS  
Sbjct: 251 APMGTTARELIER-AGGVSGD-GQLRAFQPGGGASGFFGPDQL-DLPLDFGHVARAGSMF 307

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  +IV+D S   +  + R   FY  ESCG CTPCREG   + ++++R  +G  ++ ++
Sbjct: 308 GTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAEGRGRRADL 367

Query: 376 DLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +LL   +      GR+ C L   A  P+   ++ F    E R+ +  R 
Sbjct: 368 ELLQMTAAEAGPRGRSFCDLMGGAMAPLASGLRMFAAEFEARLAEGERA 416


>gi|257415999|ref|ZP_05592993.1| NADH dehydrogenase [Enterococcus faecalis AR01/DG]
 gi|257157827|gb|EEU87787.1| NADH dehydrogenase [Enterococcus faecalis ARO1/DG]
          Length = 432

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G  +L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YSEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT   + ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRTLELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|158319965|ref|YP_001512472.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140164|gb|ABW18476.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 635

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 159/421 (37%), Positives = 236/421 (56%), Gaps = 7/421 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  +S+ + ++   +  + K I E     +I+ VKASGLRGRGG GF T
Sbjct: 147 QHRIALKNCGVIDPESIDEYLALDGYKALQKAITEMAPQDVIDVVKASGLRGRGGGGFPT 206

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F  K  +D+  Y+V NADE +PG   DR I+  +P +++E   IA +AIG+   F
Sbjct: 207 GMKWEFTAKAANDK-KYVVCNADEGDPGAFMDRSILEGDPQSVLEAMAIAGYAIGSDKGF 265

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLES 181
           IY+R E+      L+ A+ +    GLLG       ++ DI +  GAGA++CGEETAL+ S
Sbjct: 266 IYIRAEYPMAVRRLEKAIAQAKEYGLLGQRIMGTEFNFDIEIRLGAGAFVCGEETALIRS 325

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++G    KPPFPAN GL+G PT +NNVE+ A V  I+ +GA W+   G E + GTK+
Sbjct: 326 IEGERGMSVQKPPFPANSGLWGKPTLINNVETFANVAQIILKGAEWFKSVGSEKSAGTKV 385

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F++ G +     VE  M  T  E+I    GGI        AV  GG S  C+P   +   
Sbjct: 386 FALGGKITNTGLVEIPMGTTLKEVIYDIGGGIPHN-KKFKAVQTGGPSGGCIPYTHIDSP 444

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I DYD L  +GS +G+  +IVMD    ++        F  HESCG+C+PCR GT  ++ +
Sbjct: 445 I-DYDTLTTIGSMMGSGGMIVMDEDNCMVDVAKFFLEFVSHESCGKCSPCRIGTKRLLEI 503

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + ++ +G     +++ L ++S +I+   +C LG  A  P+   +K F+   E  + +  R
Sbjct: 504 LTKITEGKGTMEDLENLEKLSHDIKATALCGLGQTAPNPVLSTLKYFKHEYEAHVRE-DR 562

Query: 422 C 422
           C
Sbjct: 563 C 563


>gi|306821643|ref|ZP_07455241.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550388|gb|EFM38381.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 527

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 157/417 (37%), Positives = 235/417 (56%), Gaps = 9/417 (2%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI    Y +   + + D ++ G + ++ K+L E  +  +  E+K S LRGRGGAGF T
Sbjct: 46  QTRIALKNYDIINPEKIEDYIAFGGYYSLAKVLQENDKTKVCEEIKKSNLRGRGGAGFPT 105

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW    K  +D+  Y++ NADE +PG   DR I+  +PH+++EG  IA F  GA   F
Sbjct: 106 GKKWEAAMKQNTDQ-KYIICNADEGDPGAYMDRSILEGDPHSVLEGMAIAGFVTGADSGF 164

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+ +   +L  A+ +   + LLG N    G++ ++ +  GAGA++CGE TAL+ES
Sbjct: 165 IYVRAEYPKAVATLITAIYQAKDNNLLGDNILGSGFNFNVELRLGAGAFVCGEGTALMES 224

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G PR K       GL+G PT +NNVE+ A V  I+ +GA W+   G E + GTK+
Sbjct: 225 IEGKRGMPRNKEFRTTVKGLWGKPTVINNVETYANVAQIIEKGADWFKSIGTEKSSGTKV 284

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F++ G +N P  VE  M     +++    GG   G     AV  GG S  C+P   +   
Sbjct: 285 FALVGKINNPGLVEVPMGTKISDVVFDI-GGGIPGGKKAKAVQTGGPSGGCIPT-DLFDT 342

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D++ LKE+GS +G+  ++VMD    ++        F   ESCG+CTPCR G   ++ +
Sbjct: 343 GLDFESLKEIGSIMGSGGMVVMDEDDCMVDISRFFLEFSVDESCGKCTPCRIGNKRLLEM 402

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +++ V G A   +ID L E+S  I   ++C LG A+  PI   +K FR   +E ID 
Sbjct: 403 LDKFVSGNAVMSDIDKLEELSNMICDTSLCGLGQASPNPILSTLKYFR---QEYIDH 456


>gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 157/419 (37%), Positives = 245/419 (58%), Gaps = 7/419 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI     GL +  ++ + ++R  +  + K L E   + II+EVK S LRGRGG GF T
Sbjct: 118 QQRIALRNCGLIEPHNIREYIARDGYQALGKALTEMTPEEIIDEVKTSKLRGRGGGGFPT 177

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW  + K     P +++ NADE +PG   DR I+  +PH++IEG  I ++ IGA+  +
Sbjct: 178 GVKWE-LTKSAEGSPKFIICNADEGDPGAFMDRSIVEGDPHSVIEGLAIGAYVIGANQGY 236

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           +YVR E+    + L+ A++     G+LG +    G+D ++ +  GAGA++CGEETAL+ S
Sbjct: 237 VYVRAEYPLAVDRLEKAIESARELGVLGEDIFGSGFDFNVEIRVGAGAFVCGEETALIHS 296

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           ++G +G P  KPP+PAN GL+  PT +NNVE++A +P I+  G  W+S  G E + GTK+
Sbjct: 297 VQGDRGDPHGKPPYPANDGLWDQPTVINNVETLANIPQIILNGGDWFSHIGTEESTGTKV 356

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G ++    +E  M  T  E+I    GGI    +   A   GG S  CLP  ++  +
Sbjct: 357 FALAGDIHNTGLIEVPMGTTLREVIFNLGGGIPDDKE-FKAAQTGGPSGGCLPREKLDIS 415

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD L E+GS +G+  +IVMD  T ++        F + E+CG+CTP R GT  ++ +
Sbjct: 416 -MDYDSLLEVGSMMGSGGLIVMDEDTCMVDVARFYLDFTQDEACGKCTPGRVGTKRLLEM 474

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-DQY 419
           + R+V G A++  +D L  +   I+   +C LG +A  PI   ++ FR   E  + D+Y
Sbjct: 475 LNRIVSGEAEENILDKLEALCHEIKKTALCGLGQSAPNPILSTLEYFRDEYEAHVFDKY 533


>gi|256618969|ref|ZP_05475815.1| NADH dehydrogenase [Enterococcus faecalis ATCC 4200]
 gi|307288115|ref|ZP_07568125.1| HymB family protein [Enterococcus faecalis TX0109]
 gi|256598496|gb|EEU17672.1| NADH dehydrogenase [Enterococcus faecalis ATCC 4200]
 gi|306500851|gb|EFM70169.1| HymB family protein [Enterococcus faecalis TX0109]
 gi|315164269|gb|EFU08286.1| HymB family protein [Enterococcus faecalis TX1302]
 gi|327535030|gb|AEA93864.1| NADH-quinone oxidoreductase subunit F [Enterococcus faecalis OG1RF]
          Length = 432

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|312900655|ref|ZP_07759952.1| HymB family protein [Enterococcus faecalis TX0470]
 gi|311292136|gb|EFQ70692.1| HymB family protein [Enterococcus faecalis TX0470]
          Length = 432

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNVRQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G  +L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLLRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|91975810|ref|YP_568469.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5]
 gi|91682266|gb|ABE38568.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5]
          Length = 428

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 151/356 (42%), Positives = 207/356 (58%), Gaps = 11/356 (3%)

Query: 60  FSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115
           F T  KW FM +  +D+      YL VN DE+EPG+ KDR +M   PH LIEG  IA++A
Sbjct: 60  FPTANKWRFM-RAGADKAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYA 118

Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGE 174
            GA    I VR E+     +L  A+ E   +G LG +    G+D+ + VH  AG YI GE
Sbjct: 119 TGATEVIILVRDEYRAAAAALTRAITEAEQAGWLGRDILGSGFDLTMRVHTSAGRYIVGE 178

Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234
           ETAL+ +LEG++  PR +PP+PA  GL+G PTTVNNVE+++ VP+I+  GA WY G  R 
Sbjct: 179 ETALIAALEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSAVPSIVENGADWYRGLSRS 238

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
           +  GTKL+ +SG V  P  +E  M  T  ELIE  CGGIR G   L A  PGG +   L 
Sbjct: 239 DEGGTKLYGVSGCVARPQLIEAPMGTTGRELIEI-CGGIRNG-RALFAFQPGGGATAFLE 296

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
             ++    +D+   K+ GS LGT A+IV+D     + AI R   FY  ESCG CTPCR+G
Sbjct: 297 TAEL-DVPLDFTHTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDG 355

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSK--NIEGRTICALGDAAAWPIQGLIKNF 408
             W+ ++++ L  G   K ++DLL+   +     GR+ C L   A  P++  ++ F
Sbjct: 356 LPWVAKLLDTLEAGRGAKADLDLLHSHVQLSAPSGRSYCDLNTGALTPLKSGLERF 411


>gi|149374945|ref|ZP_01892718.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
 gi|149360834|gb|EDM49285.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
          Length = 571

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 147/350 (42%), Positives = 210/350 (60%), Gaps = 17/350 (4%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW  +       P Y V+NADE EPGT KDR  +  EPH  +EG +++++A+ A 
Sbjct: 227 FPTYRKWQAV--RAEPGPRYAVINADEGEPGTFKDRYFLEREPHVFLEGALVSAWAVEAQ 284

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+      L+ AV E  A+G++    + G+   +I+  GAGAYICGEE+AL+
Sbjct: 285 ALYIYLRDEYPGLHGVLKNAVAELEAAGIV----EPGF---VILRRGAGAYICGEESALI 337

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK G+PR +PPF A  GL+G PT VNNVE++  +P I  +GA W++  GR   +G 
Sbjct: 338 ESLEGKPGKPRHRPPFVAQKGLFGQPTLVNNVETVYWIPRIHAQGAEWFASQGRHGRKGL 397

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + FS+SG V  P        IT  ELI+++CGG+  G   LLA +PGG+S   LPA +  
Sbjct: 398 RSFSVSGRVATPGVHLAPAGITLSELIDEYCGGMAEG-HRLLAYLPGGASGGILPASKA- 455

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D L+E G  +G+AAVIV+    D+  A   L  F+  ESCGQCTPCR GT  M+
Sbjct: 456 DIPLDFDTLQEHGCFIGSAAVIVLSDQDDLQAAASNLLGFFADESCGQCTPCRVGTEKML 515

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            ++ER         + D L +++  +   +IC LG AA  P+  L+++FR
Sbjct: 516 TLLER------STWDEDTLKQLAGVMADASICGLGQAAPNPVLSLLRDFR 559


>gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
 gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
          Length = 640

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/408 (36%), Positives = 228/408 (55%), Gaps = 5/408 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ D + RG +  + K L +   + ++ EV  + LRGRGG GF  G KW    +  
Sbjct: 146 INPQNIEDYIQRGGYSALVKALFQMTPESVLEEVDTANLRGRGGDGFPAGKKWR-TTRDA 204

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D   Y++VN DE +PG   DR IM   PH ++EG  I +FA+GA   +IYVR E+    
Sbjct: 205 PDPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAVGAKEGYIYVRAEYPLAV 264

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E+L AA+ +    GLLG N    G+D  + VH GAGA++ GE +AL+ ++EG+ G+PR K
Sbjct: 265 ENLYAAIRQAEEYGLLGKNILGSGFDFIVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 324

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
               A  GL+  P+ +NNVE+ A VP I+ +GA W+   G E ++GTK+F++ G VN   
Sbjct: 325 YIRTAIKGLWDKPSNLNNVETWANVPHIINKGAEWFRSIGTEGSKGTKIFALVGKVNNTG 384

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            VE  M  T  ++I K  GG+R G   + AV  GG S  C+P   +   + DYD L ++G
Sbjct: 385 LVEVPMGTTLRDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDVLSKLG 442

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S +G+  +I+MD  T ++        F   ESCG+C PCREG   ++ ++ R+ +G    
Sbjct: 443 SMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVEILTRITEGKGTM 502

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            ++D L ++S  +    +CALG  A  P+   +K FR    + I   H
Sbjct: 503 ADMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKH 550


>gi|297190828|ref|ZP_06908226.1| LOW QUALITY PROTEIN: respiratory chain oxidoreductase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297150631|gb|EFH30698.1| LOW QUALITY PROTEIN: respiratory chain oxidoreductase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 362

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/358 (42%), Positives = 205/358 (57%), Gaps = 21/358 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I EV  +GL GRGGA F TG KW       +D PHYLV NADESEPGT KDR +M  +P
Sbjct: 8   VIREVTDAGLLGRGGAAFPTGRKWQATASQ-ADHPHYLVCNADESEPGTFKDRVLMEGDP 66

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161
             LIE   IA +AIGAH  F+Y+RGE+ R    L+ A+    A GLLG +    GY  DI
Sbjct: 67  FALIEAMTIAGYAIGAHQGFLYLRGEYPRALGLLENAIASARARGLLGEDVLGQGYAFDI 126

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGAYICGEETA+  S+EG +G+PR KPPFP   GL+G PT VNNVE++  V  IL
Sbjct: 127 EIRRGAGAYICGEETAIFNSIEGYRGEPRTKPPFPVEKGLFGKPTAVNNVETLVNVLPIL 186

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
                     GR     TKLF +SG+V  P   E    +T  ELIE     + G  D + 
Sbjct: 187 N---------GRTEE--TKLFCLSGNVARPGIYELPFGVTLRELIE-----LAGPPDRMR 230

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV+ GG++   +   ++    + ++G +  G+ LG+  V+V+D + ++ + + R++ F++
Sbjct: 231 AVLLGGAAGSFVRPDELD-IPLTFEGTRAAGTTLGSGVVLVLDDTVELPRVLLRIAEFFR 289

Query: 342 HESCGQCTPCREGTGWMMRVMERLV--KGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            ESCGQC PCR GT      + R+    G     +I LL EV   +   +IC LG  A
Sbjct: 290 DESCGQCVPCRVGTVRQEEALHRIKDRTGADAAGDIALLREVGAAMRDASICGLGQTA 347


>gi|77919203|ref|YP_357018.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545286|gb|ABA88848.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 151/412 (36%), Positives = 232/412 (56%), Gaps = 8/412 (1%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAG 59
           +  Q RI T   G +  +S+   ++ G +  + K L K +   +I  +K SGLRGRGGAG
Sbjct: 1   MATQLRIATRNSGFIDPESVESYIAVGGYQALGKCLSKMKPADVIELMKNSGLRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F  K  SD  H +V NADE +PG   DR ++  +PH+++E   I ++AIG +
Sbjct: 61  FPTGVKWGFAAKYESDIKH-VVCNADEGDPGAFMDRAVLEGDPHSVLEAMAIGAYAIGGN 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177
              IY+R E+      L+ A+++    G+LG N  +G D   D+ + +GAGA++CGEETA
Sbjct: 120 KGTIYIRAEYPLAIARLKMAIEQAKEMGVLGDNI-MGTDFCFDLELKYGAGAFVCGEETA 178

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+P  KPPFPA  G +  PT VNNVE++A +P I+ +GA W++  G E ++
Sbjct: 179 LINSMEGNRGEPYTKPPFPAEAGYWNKPTIVNNVETLANIPAIIMKGADWFNKIGTETSK 238

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F I G +     +E  M  T  E+I    GGI GG +   AV  GG S   L    
Sbjct: 239 GTKVFCICGKIANVGLIEVPMGTTLKEVIYDIGGGIPGGKE-FKAVQTGGPSGGALTYKD 297

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I DY+ L    S +G+  +IVMD    ++        F   E+CG+CTPCR G+  
Sbjct: 298 LDAPI-DYENLVARQSMMGSGGMIVMDEEDCMVSVAKFFLDFTMDETCGKCTPCRIGSKR 356

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +  +++++  G   + +++ L  +S NI+   +C LG     P+   ++ F 
Sbjct: 357 IYELLDKITIGQGTEEDLEKLRSLSVNIKDTALCGLGQTMPNPVLSTMRVFE 408


>gi|315166637|gb|EFU10654.1| HymB family protein [Enterococcus faecalis TX1341]
          Length = 432

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNVRQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|255527514|ref|ZP_05394382.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|255508784|gb|EET85156.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
          Length = 601

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/424 (36%), Positives = 231/424 (54%), Gaps = 12/424 (2%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFST 62
           Q++I   N+  +    + D + RG +  + K++ + + + ++ EV  SGLRGRGGAGF T
Sbjct: 118 QNKIALRNVGEIDPTVIEDYIERGGYKALKKVISQMKPEDVLKEVGDSGLRGRGGAGFPT 177

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
             KW    ++    P Y+V N DE +PG   DR IM  +PH++IEG  I ++A+G    F
Sbjct: 178 SRKWQTAAEI-DTTPKYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMTICAYAVGGTLGF 236

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179
            Y+R E+    E++Q A++     G LG N   +   +D+ I+   G GA++CGE TAL+
Sbjct: 237 AYIRDEYGLAVENMQKAINVARERGFLGENILGTNFSFDIQIV--RGGGAFVCGESTALM 294

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRG 238
            S+EG  G+PR K       GL+G PT +NNVE+ A +P IL +G  WY   G  E ++G
Sbjct: 295 SSIEGMVGEPRAKYIHTTEKGLWGQPTVLNNVETWANIPIILDKGGQWYHSIGTMEKSKG 354

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+FS+ G V     VE  M  T  E+I    GG+        AV  GG S  CLP   +
Sbjct: 355 TKVFSLVGKVKNTGLVEVPMGTTLREIIFNIGGGVLNDR-KFKAVQIGGPSGGCLPEEYL 413

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              + DYD L +  S +G+  +IVMD  T I+        F   ESCG+C PCREG   M
Sbjct: 414 DLPV-DYDTLTKADSMMGSGGMIVMDDRTCIVDVTRYYLGFLAEESCGKCVPCREGVKRM 472

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +M  +  G  ++ +++ L E++   +   +C+LG +AA P+   I+ FR   EE I +
Sbjct: 473 LEIMTDICNGEGREGDLEELLEIASMSKEAALCSLGKSAANPVLASIRYFRDEFEEHI-R 531

Query: 419 YHRC 422
             RC
Sbjct: 532 NKRC 535


>gi|160936612|ref|ZP_02083979.1| hypothetical protein CLOBOL_01502 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440403|gb|EDP18148.1| hypothetical protein CLOBOL_01502 [Clostridium bolteae ATCC
           BAA-613]
          Length = 447

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 145/403 (35%), Positives = 228/403 (56%), Gaps = 7/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ +  + G +  + K L   ++ I+ E+  S L+GRGGAG+  G KW  + ++  D   
Sbjct: 25  SVPEFEALGGFSGIRKALSMEKEEILEEISRSNLKGRGGAGYPAGRKWKSLYRIEGD-TK 83

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE EPGT KDR ++   P ++IEG +IA +  G+   +IY+RGE+ R ++  + 
Sbjct: 84  YIVCNADEGEPGTFKDRVLLEETPLSVIEGMLIAGYVFGSKQGYIYIRGEYRRIQKIFET 143

Query: 139 AVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A++    +G LG +     G+D  I V  G GAY+CGE +A+L S+EGK G+PR+KPP  
Sbjct: 144 ALENAEDAGYLGKDILGVPGFDYSITVVSGGGAYVCGENSAMLNSIEGKTGRPRIKPPHL 203

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGLYG PT VNNVE++  VP IL  G+  +  +G   + GTKL SISGHV      E 
Sbjct: 204 AEVGLYGKPTLVNNVETLCCVPIILEEGSQKFLSYGTTESGGTKLVSISGHVKNRGVFEV 263

Query: 257 SMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
            + I+  +LI  EK+ GG   G       + G S     P  +       Y+ L   G  
Sbjct: 264 GLGISLRQLIMDEKYGGGTSTGRKPGFFHMGGQSGPIGFP--EQLDTPYTYETLAPKGLA 321

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+ A++V+D S  I++ I ++  F+ HESCG+CTPCR GT  ++ ++   V+G A+  +
Sbjct: 322 VGSGAIVVLDDSVCIVEYIQKVFEFFVHESCGKCTPCRLGTTRILELLTDFVEGRAKDGD 381

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ L  +++ +   + C LG +    +   +++ R   E  I+
Sbjct: 382 VERLEYMARQVSQLSACGLGQSVNVALMSALRHRRGDFEAHIN 424


>gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 238/410 (58%), Gaps = 7/410 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
             Q  +  N   +  + +++ ++R  +  +  IL  + R  +I++V  S LRGRGG GF 
Sbjct: 140 NQQRVVLRNCGVINPEDINEYIARDGYAALADILNHRSRAEVIDQVINSVLRGRGGGGFP 199

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG KW    +     P Y+V NADE +PG   DR I+  +PH ++EG  I ++A+GA   
Sbjct: 200 TGKKWQIAARQ-EVNPKYIVCNADEGDPGAFMDRSILEGDPHAILEGMSIGAYAVGAEQG 258

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+    + L+ A+ +    GLLG N    G++ DI +  GAGA++CGEETALL 
Sbjct: 259 YIYVRAEYPIAVDRLEIAIGQARQMGLLGKNILGSGFNFDIDIKLGAGAFVCGEETALLH 318

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S  G +G+PR +PP+PA  GL+G PT +NNVE+ A V  + ++G  W+ G G   + GTK
Sbjct: 319 SCMGARGEPRPRPPYPAQEGLWGKPTVINNVETFANVTVVFQKGWQWFVGRGTAKSSGTK 378

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS++G +     +E  M  T   +I    GGI  G     AV  GG S  C+P  +   
Sbjct: 379 VFSLAGKIKNTGLIEVPMGSTLRSIIFDTGGGIPDGH-RYKAVQTGGPSGGCIPE-EYLD 436

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMM 359
            ++DYD L ++GS +G+  +IVMD   D +  I R  V F + ESCG+CTPCR GT  ++
Sbjct: 437 ILVDYDSLAKVGSIMGSGGLIVMD-DRDCMVDIARFYVEFAQDESCGRCTPCRVGTKRLL 495

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            +++R+ KG  +  ++ LL E+S++I+  ++C LG  A  P+   ++ FR
Sbjct: 496 EILQRITKGEGEMEDLRLLEELSQDIKVASLCGLGQTAPNPVLSTLRFFR 545


>gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
 gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 631

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 153/383 (39%), Positives = 223/383 (58%), Gaps = 5/383 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +  SGLRGRGG GFSTG KWSF     SD   Y++ NADE +PG   DR I+  
Sbjct: 188 DELIKLITDSGLRGRGGGGFSTGKKWSFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
           +PH++IE   IA +AIGA    IY+R E+      L+ A+D+    GLLG N    G++ 
Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNF 306

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P 
Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPA 366

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ +G  WY   G E + GTK+F+++G +N    VE  M  T  E+I     GI+ G   
Sbjct: 367 IINKGGDWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTTLREIIYDIGEGIKNG-KK 425

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++        F
Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTAIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR G   ++  + ++  G   + +++ L E+S  I+  ++C LG  A  
Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544

Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422
           P+   ++ F    E  +++  RC
Sbjct: 545 PVLSTMRYFMDEYEAHVNE-KRC 566


>gi|33519940|ref|NP_878772.1| NADH dehydrogenase I chain F [Candidatus Blochmannia floridanus]
 gi|33504286|emb|CAD83178.1| NADH dehydrogenase I chain F [Candidatus Blochmannia floridanus]
          Length = 445

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/353 (40%), Positives = 205/353 (58%), Gaps = 6/353 (1%)

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KWS M +  S    YLV NADE EPGT KDR +M   PH L+EG +IA +A+G   A+I+
Sbjct: 74  KWSMMTQNKSGLVRYLVCNADEMEPGTYKDRFLMERLPHLLLEGILIAGYALGVSVAYIF 133

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           +R E++   E L+ A++E  ++GLLG N     +++++ +H GAG YICGEETALL SLE
Sbjct: 134 LRYEYMTAAEYLRIAINEIRSAGLLGKNILNTEFNLELFIHTGAGRYICGEETALLSSLE 193

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTKL 241
           G +  PR KPPFPA  GL+G PT VNNVE++  +P I+  G SWY     +  N+ GTKL
Sbjct: 194 GNRAIPRAKPPFPAQSGLWGKPTCVNNVETLCNIPGIIEHGVSWYKNISVKYSNDSGTKL 253

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
              SG V  P   E    IT  E++E +  G+  G+  L A  PGG+S   L    +   
Sbjct: 254 MGFSGKVKNPGIWELPFGITAREILEDYAYGMCNGF-YLKAWQPGGASTDFLIENHLDTP 312

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MD+D +K +GS  GT   + +D + +++  +  L  F+  ESCG CTPCR+G  W++++
Sbjct: 313 -MDFDNIKSVGSRFGTGIAVAVDNTVNMVGLVRNLEEFFSRESCGWCTPCRDGLPWVVKL 371

Query: 362 MERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +  L K      ++ +L  +   +  G+T CA    A  P++  +K FR   E
Sbjct: 372 LIALEKNSGYPEDLIMLEHLCNLLGPGKTFCAHAPGAMEPLKSALKYFRDEFE 424


>gi|227518655|ref|ZP_03948704.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX0104]
 gi|229545926|ref|ZP_04434651.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX1322]
 gi|256853026|ref|ZP_05558396.1| NADH dehydrogenase [Enterococcus faecalis T8]
 gi|256965224|ref|ZP_05569395.1| NADH dehydrogenase [Enterococcus faecalis HIP11704]
 gi|257419201|ref|ZP_05596195.1| NADH dehydrogenase [Enterococcus faecalis T11]
 gi|307273327|ref|ZP_07554572.1| HymB family protein [Enterococcus faecalis TX0855]
 gi|307291376|ref|ZP_07571260.1| HymB family protein [Enterococcus faecalis TX0411]
 gi|227073912|gb|EEI11875.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX0104]
 gi|229308994|gb|EEN74981.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX1322]
 gi|256711485|gb|EEU26523.1| NADH dehydrogenase [Enterococcus faecalis T8]
 gi|256955720|gb|EEU72352.1| NADH dehydrogenase [Enterococcus faecalis HIP11704]
 gi|257161029|gb|EEU90989.1| NADH dehydrogenase [Enterococcus faecalis T11]
 gi|306497607|gb|EFM67140.1| HymB family protein [Enterococcus faecalis TX0411]
 gi|306509854|gb|EFM78879.1| HymB family protein [Enterococcus faecalis TX0855]
 gi|315029989|gb|EFT41921.1| HymB family protein [Enterococcus faecalis TX4000]
 gi|315575555|gb|EFU87746.1| HymB family protein [Enterococcus faecalis TX0309B]
 gi|315580003|gb|EFU92194.1| HymB family protein [Enterococcus faecalis TX0309A]
          Length = 432

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
 gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
          Length = 599

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 233/416 (56%), Gaps = 5/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N+  +   ++ D ++RG +  + K L    D II EV+ASG+RGRGGAGF TG KW 
Sbjct: 117 VLHNIGEIDPTNIDDYIARGGYSALKKALSMDADRIIGEVEASGIRGRGGAGFPTGTKWR 176

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
              K  SD   Y+  N DE +PG   DR I+  +PH++IEG +I + AI A   ++Y+R 
Sbjct: 177 QALKYDSDV-KYVACNGDEGDPGAFMDRSILEGDPHSVIEGMIICACAIDAQEGYMYIRD 235

Query: 128 EFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    E+ + A+ +    G LG S    G   DI +  G GA++CGE TAL+ S+EG+ 
Sbjct: 236 EYGLAVENCKIALQQAREKGFLGDSVMGTGKSFDIQIVRGGGAFVCGESTALMASVEGRV 295

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR K       GL+  PT +NNVE++A +P I++ G + +   G E + GTK+F++ G
Sbjct: 296 GEPRAKYIRSVQRGLWNKPTVLNNVETLANIPRIIQDGGAKFKELGTEKSSGTKVFALVG 355

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V     VE  M  T   LI    GGI G      AV  GG S  C+PA ++    MD+D
Sbjct: 356 KVKRTGLVEIPMGSTLRHLIYDIGGGIPGDRP-FKAVQTGGPSGGCIPA-ELLDLPMDFD 413

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L   G+ +G+  VIVMD  + +++       F   ESCG+CTPCREG   ++ ++  + 
Sbjct: 414 TLTSYGAMMGSGGVIVMDDRSCMVEVARYYIEFLCDESCGKCTPCREGLRHLLTILTDIC 473

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +G  Q+ +I+L+ ++   ++  ++C+LG +AA P+   IK FR   E  I +  RC
Sbjct: 474 EGRGQEGDIELMEKICHTMQDASLCSLGKSAANPVLTTIKYFRDEYEAHIHE-KRC 528


>gi|158425077|ref|YP_001526369.1| putative NAD-dependent formate dehydrogenase beta subunit protein
           [Azorhizobium caulinodans ORS 571]
 gi|158331966|dbj|BAF89451.1| putative NAD-dependent formate dehydrogenase beta subunit protein
           [Azorhizobium caulinodans ORS 571]
          Length = 519

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/391 (36%), Positives = 219/391 (56%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL +  + G +  + K +E G    + +V  SGLRGRGGAGF TG+KW  +    +D+  
Sbjct: 117 SLEEYKAHGGYKGLAKAIEIGPSATVEQVFESGLRGRGGAGFPTGIKWRTVAAAPADQ-R 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA   F+Y R E+    + ++ 
Sbjct: 176 YIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGATKGFVYCRSEYPLSLQVMEK 235

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +GLLG N +   YD D+ +  GAGAY+CGEETALL+SLEGK+G  R KPP PA
Sbjct: 236 AIAIARTAGLLGKNVAGSQYDFDLEMRMGAGAYVCGEETALLDSLEGKRGVVRAKPPLPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + GL+G PT +NN+ S+A VP IL +G ++Y  FG   +RGT    ++G++ +    E +
Sbjct: 296 HKGLFGKPTVINNLISLATVPVILEKGGAFYRDFGMGRSRGTMPIQLAGNIKFGGIFETA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             I   EL+    GG   G   + AV  GG     LP  Q      DY+      + +G 
Sbjct: 356 FGIPLGELVYDIGGGTASGRP-VRAVQAGGPLGAYLPVHQFD-TPFDYEAFAAKDALIGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+         F  HESCG+CTPCR G+   +  +++++ G  ++  + +
Sbjct: 414 GGIVVFDDTVDMAHMARFAMEFCSHESCGKCTPCRIGSTRGVETLDKIIAGNRREANLAV 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++ + ++  ++CALG    +P+   + +F
Sbjct: 474 LTDLCQTMKLGSLCALGGFTPYPVLSALTHF 504


>gi|311697064|gb|ADP99937.1| NADH dehydrogenase (quinone) [marine bacterium HP15]
          Length = 512

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/391 (38%), Positives = 222/391 (56%), Gaps = 3/391 (0%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S++D  S G +  +++ +      I++EVKASGLRGRGGA F TG+KW  +      +  
Sbjct: 118 SIADYRSHGGFVGLEQAVSLSPQAIVDEVKASGLRGRGGAAFPTGIKWQTVHDEPWQQQK 177

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR  M  +P+ LIEG  IA  A+GA   FIY+R E+      L  
Sbjct: 178 YIVCNADEGDSGTFADRLAMECDPYMLIEGMTIAGLAVGATQGFIYLRSEYPVAHRILNE 237

Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+    A G LG + +  G   ++ V   AGAYICGEET+LLESLEGK+G  R KPP PA
Sbjct: 238 AISRAEAEGYLGRDVRGSGRAFNLEVRLAAGAYICGEETSLLESLEGKRGLVRAKPPLPA 297

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNV S A VP IL +G   Y+ +G   +RGT    ++G++     +E +
Sbjct: 298 IKGLFGQPTVVNNVLSFAAVPFILAKGGQTYAHYGMGKSRGTLPIQLAGNIRRGGLIELA 357

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             ++  E++E   GG   G   + AV  GG  +  +P  Q     MDY+   ++G+G+G 
Sbjct: 358 FGVSLREILEDFGGGTFTG-RPMKAVQVGGPLMAYMPQNQWD-TPMDYEAFAQLGAGIGH 415

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             V+V D + D+ +       F   ESCG+CTPCR G+   + V++R+  G + +  + L
Sbjct: 416 GGVVVFDDTVDMGEQARFAMEFCTVESCGKCTPCRIGSVRGLEVIDRIRAGESPEANLVL 475

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L E+ + +   ++CA+G    +P+Q ++K F
Sbjct: 476 LEELCETMVDGSLCAMGGMTPFPVQSVMKYF 506


>gi|187477322|ref|YP_785346.1| NAD-dependent formate dehydrogenase subunit beta [Bordetella avium
           197N]
 gi|115421908|emb|CAJ48428.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella avium
           197N]
          Length = 518

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 159/410 (38%), Positives = 228/410 (55%), Gaps = 6/410 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   S+ D  + G    +++ L    + II EV ASGLRGRGGA F
Sbjct: 101 LRHQERLTFVRVGVIDPLSIQDYAAHGGLAGLERALNLTPEQIIEEVAASGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S    Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWKTVHSAPSAT-KYIVCNADEGDSGTFADRLLMEGDPYALIEGMTIAGLAVGARY 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+      G LG +    G   D+ V  GAGAYICGEETALL
Sbjct: 220 GYIYVRSEYPHAIATLRAAIGRAREVGWLGEDIHGSGRCFDLEVREGAGAYICGEETALL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VPTIL RGA++Y  +G   + GT
Sbjct: 280 ESLEGKRGVVRAKPPLPAISGLFGQPTVINNVISLATVPTILARGAAFYRDYGVGRSHGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE++  ++  EL+    GG   G   L A   GG     LP  Q  
Sbjct: 340 LPFQLAGNIRQGGLVEKAFGLSLRELLYDFGGGSASG-RPLRAAQVGGPLGAYLPESQWD 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    + + +G   V+  D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 399 -VPLDYEAYIAISAMVGHGGVVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457

Query: 360 RVMERLVKGIAQKR-EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             ++R++ G  Q+  ++ LL ++   + G ++CALG  A +P+   + +F
Sbjct: 458 ETLDRIMAGGEQREAQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHF 507


>gi|29375956|ref|NP_815110.1| NAD-dependent formate dehydrogenase, beta subunit, putative
           [Enterococcus faecalis V583]
 gi|256762396|ref|ZP_05502976.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T3]
 gi|29343418|gb|AAO81180.1| NAD-dependent formate dehydrogenase, beta subunit, putative
           [Enterococcus faecalis V583]
 gi|256683647|gb|EEU23342.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T3]
          Length = 417

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 16  FDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 74

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 75  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 134

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 135 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 194

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 195 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 254

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 255 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 313

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 314 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 373

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 374 VTRLSACGLGQSVANPMKSALALF 397


>gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
 gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
          Length = 634

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 159/408 (38%), Positives = 233/408 (57%), Gaps = 7/408 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFST 62
           Q R+     GL   +SL + ++R  +  + + L  G  + +I EVK S LRGRGG GF T
Sbjct: 147 QQRVVLGNSGLVDPESLEEYVARDGYFALWESLSAGSPEEVIEEVKESNLRGRGGGGFPT 206

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F+    +D   YL+ NADE +PG   DR ++  +P+ ++EG  IA +A+GA   +
Sbjct: 207 GMKWEFLAGNDADL-KYLICNADEGDPGAYMDRTLLESDPYAVLEGMTIAGYALGAEKGY 265

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    E LQ A+++   +GLLG +    G+D D+ +  GAGA++CGEETA++ S
Sbjct: 266 IYVRAEYPLAIERLQHAIEQAREAGLLGQDIFGEGFDFDLEIKKGAGAFVCGEETAMINS 325

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEG +G P+ +PP+PA+ GL+  PT VNNVE+ A VP ILR GA W++  G E + GTK+
Sbjct: 326 LEGGRGMPKPRPPYPADEGLWAEPTNVNNVETWANVPAILRNGAEWFADIGTEESGGTKV 385

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS++G V     VE  +    +E++ +   G         AV  GG S   +P       
Sbjct: 386 FSVTGDVENTGLVEVPLGTRLEEVVFEI--GGGTTGGEFKAVQTGGPSGGVIPREHAETP 443

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I DY+ L E+GS +G+  +IVMD ST ++        F   ESCG+C PCR GT  M+ +
Sbjct: 444 I-DYETLMELGSMMGSGGMIVMDESTCMVDQSRFFLEFSVDESCGKCPPCRYGTKQMLEM 502

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +E +  G A    I  L  +  ++E  ++C LG  AA P+   +  F 
Sbjct: 503 LEGITNGAADPDVISELRSLGDSMEEMSLCGLGQTAANPVMSTLDYFE 550


>gi|172037233|ref|YP_001803734.1| NADH dehydrogenase I subunit F [Cyanothece sp. ATCC 51142]
 gi|171698687|gb|ACB51668.1| NADH dehydrogenase I chain F [Cyanothece sp. ATCC 51142]
          Length = 545

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 244/395 (61%), Gaps = 9/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           ++ D ++ G +  +  +L E   + +I EV  SGLRGRGG G+ TG+KW+ + K+   + 
Sbjct: 146 NIDDYIAEGGYQQLHHVLLEMTPNDVIKEVTKSGLRGRGGGGYPTGVKWATVAKMPGQQ- 204

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ NADE +PG   DR ++  +PH ++EG  IA++A+GA+  +IY+R E+    + L+
Sbjct: 205 KYVICNADEGDPGAFMDRAVLESDPHRILEGMAIAAYAVGANHGYIYIRAEYPLAIKRLE 264

Query: 138 AAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            A+ +    GL+GS   +S   + +DI V  GAGA++CGEETAL+ S+EGK+G PR +PP
Sbjct: 265 KAIQQAKRYGLMGSQIFDSPFDFKIDIRV--GAGAFVCGEETALIASVEGKRGTPRPRPP 322

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           +PA  GL+G PT +NNVE+ A +  I+R G  WY+  G EN++GTK+F+++G +     +
Sbjct: 323 YPAESGLWGDPTLINNVETYANIVPIIREGGDWYASIGTENSKGTKVFALTGKIENNGLI 382

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  +   ++E+  GG+      + AV  GG S  C+PA  +    ++YD L+++G+ 
Sbjct: 383 EVPMGTSIRTIVEEIGGGVL-DQGTVKAVQTGGPSGGCIPA-HLLDTPVEYDSLQKLGTI 440

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  +IVMD+ T +++       F + ESCG+C PCR GT  +  ++ +LV+  A +++
Sbjct: 441 MGSGGMIVMDQDTSMVEIARFYMDFCQEESCGKCIPCRAGTVQLYDLLTKLVERKATQQD 500

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +D L  + + ++  ++C LG  A  P+   ++ FR
Sbjct: 501 LDQLEALCQMVKDTSLCGLGMTAPNPVISTLQYFR 535


>gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
 gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
          Length = 597

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/393 (38%), Positives = 226/393 (57%), Gaps = 5/393 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + + + R  ++ + K+L+    D +I  +  SGLRGRGG GF TG KW     +  D   
Sbjct: 129 IDEYIGRNGYEALGKVLKTMTPDDVIQVILDSGLRGRGGGGFPTGKKWQLARNLVKDADQ 188

Query: 79  -YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+  NADE +PG   DR ++  +PH +IE   IA +AIGA   +IY+R E+    + LQ
Sbjct: 189 KYVCCNADEGDPGAFMDRSVLEGDPHVVIEAMAIAGYAIGATQGYIYIRAEYPIAVQRLQ 248

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+D+    GLLG N    G+D D+ +  GAGA++CGEETAL+ S+EG +G+PR +PPFP
Sbjct: 249 IAIDQAREYGLLGKNIFDSGFDFDLDIRLGAGAFVCGEETALMTSIEGNRGEPRPRPPFP 308

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  PT +NNVE+ A +P I+  GA W++  G E ++GTK+F++ G ++    VE 
Sbjct: 309 AESGLFKKPTVLNNVETYANIPQIILNGADWFASMGTEKSKGTKVFALGGKIHNTGLVEV 368

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  T  E+I +  GGI  G     A   GG S  C+PA  +   I DYD L  +GS +G
Sbjct: 369 PMGTTLREVIYEIGGGIPNG-KAFKAAQTGGPSGGCIPAEHLDIPI-DYDNLIAIGSMMG 426

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  +IVMD    ++        F   ESCG+CTPCR GT  +  ++E++  G A   ++D
Sbjct: 427 SGGLIVMDEDNCMVDIAKFFLQFTVDESCGKCTPCRIGTKRLYEMLEKITSGNATMEDLD 486

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            + ++   I+  ++C LG  A  P+   ++ F+
Sbjct: 487 KMEKLCYYIKNNSLCGLGQTAPNPVLSTLRYFK 519


>gi|91203919|emb|CAJ71572.1| similar to proton-translocating NADH dehydrogenase I, 51 kDa
           subunit (NuoF) [Candidatus Kuenenia stuttgartiensis]
          Length = 616

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 146/408 (35%), Positives = 240/408 (58%), Gaps = 5/408 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62
            + +I  N   +   S+ + ++RG ++ + K+L+    + +I EV  SGLRGRGG GFST
Sbjct: 136 QRKQILRNCGYIDPDSIEEYIARGGYEALKKVLKTMSPEQVIEEVSKSGLRGRGGGGFST 195

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW+   K  +D   +++ NADE +PG   DR ++  +PH ++EG +I  +AIGA   +
Sbjct: 196 GNKWASCAKYSTDE-KFVICNADEGDPGAFMDRSLLEGDPHAVLEGMIIGGYAIGATSGY 254

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+R E+      ++  +++    G LG N    GY ++I +  GAGA++CGE TAL  S
Sbjct: 255 IYIRAEYPLAVRRIKHTIEQAGKYGFLGENILGSGYSLNIYIKEGAGAFVCGESTALQYS 314

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G PR +PP     GL+  PT +NNVE+ A VP ++ +GA WY+  G + ++GTK+
Sbjct: 315 IEGKRGMPRTRPPQSVEAGLWDKPTVLNNVETFANVPLVMNKGAGWYAQMGTDKSKGTKI 374

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS++G + +P  VE  M  T  +++    GGI        AV  GG S  CLP   +   
Sbjct: 375 FSLTGKIKHPGLVEVPMGTTIRQIVFDIGGGIP-RKRRFKAVQIGGPSGGCLPESLLDFP 433

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I DY+ L E+G+ +G+ + +V+D  T +++       F   ESCG+C PCR GT  M+ +
Sbjct: 434 I-DYESLLEIGAMMGSGSFVVVDDGTCMVEMARFFMDFCARESCGKCPPCRIGTTLMLDI 492

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + R+ +G+ ++ +I +L E+   ++  ++C LG +A  PI+  ++ F+
Sbjct: 493 LTRITQGMGEEGDIAMLEEMCGEVKTMSLCGLGQSAPNPIKSTLRYFK 540


>gi|316935781|ref|YP_004110763.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1]
 gi|315603495|gb|ADU46030.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1]
          Length = 428

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/356 (42%), Positives = 207/356 (58%), Gaps = 11/356 (3%)

Query: 60  FSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115
           F T  KW FM +  S+R      YL VN DE+EPG+ KDR +M   PH LIEG  IA++A
Sbjct: 60  FPTANKWRFM-RTGSERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYA 118

Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGE 174
           IGA    I VR E+     +L  A+ E  A+GLLG +    G+D+ + VH  AG YI GE
Sbjct: 119 IGATEVIILVRDEYRAAATALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGE 178

Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234
           ETAL+ ++EG++  PR +PP+PA  GL+G PTTVNNVE+++ VP+I+  GA WY      
Sbjct: 179 ETALIAAIEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGADWYRSLSFT 238

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
           +  GTKL+ ISG V  P  +E  M  T  EL+ +  GGIR G   LLA  PGG +     
Sbjct: 239 DEGGTKLYGISGCVERPQLIEAPMGSTARELLHR-AGGIRNG-RALLAFQPGGGATAFFE 296

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
             ++    +D+   K+ GS LGT A+IV+D     + AI R   FY  ESCG CTPCR+G
Sbjct: 297 KAEL-DVPLDFTSTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDG 355

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYE--VSKNIEGRTICALGDAAAWPIQGLIKNF 408
             W+ ++++ L  G   + +IDLL++        GR+ C L   A  P++  ++ F
Sbjct: 356 LPWVSKLLDTLEAGKGTRADIDLLHQHVALSGPSGRSYCDLNTGALTPLRSGLERF 411


>gi|121595765|ref|YP_987661.1| NADH dehydrogenase (quinone) [Acidovorax sp. JS42]
 gi|120607845|gb|ABM43585.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Acidovorax sp. JS42]
          Length = 640

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 148/374 (39%), Positives = 220/374 (58%), Gaps = 21/374 (5%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKD 94
           E   + ++  ++ SGLRG GGAGF  G KW    ++  D+P    + VN DE EPGT KD
Sbjct: 251 EMDAEAVLAAMEDSGLRGLGGAGFPAGRKW----RIVRDQPAPRLMAVNIDEGEPGTFKD 306

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
           R  +  +PH  +EG +IA+  +G    +IY+R E+   R  LQ+A++E  A     S   
Sbjct: 307 RTYLERDPHRFLEGVLIAAQVVGTEAVYIYLRDEYHGCRALLQSALEELRAE----SPCP 362

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
           L +   I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT  +N E++
Sbjct: 363 LPH---IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETL 419

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
             V  I+ +G  W++ FGR   RG + FS+SG V  P        IT  EL++++CGG+ 
Sbjct: 420 YWVRDIVEKGPQWFASFGRHGRRGLRSFSVSGRVKEPGVKLAPAGITLRELVDEYCGGMA 479

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
            G   L A +PGG+S   LPA ++    +D+D L+  G  +G+AAVIV+ +      A  
Sbjct: 480 DG-HVLYAYLPGGASGGILPA-RLSDVPLDFDTLQPHGCFIGSAAVIVLSQHDRARDAAL 537

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394
            +  F+ HESCGQCTPCR GT    ++M+      A   + D L ++++ +   +IC LG
Sbjct: 538 NMMRFFAHESCGQCTPCRVGTAKAAQLMQ------APLWDEDTLDDLAQVMADASICGLG 591

Query: 395 DAAAWPIQGLIKNF 408
            AA  PI+ + K F
Sbjct: 592 QAAPNPIRCIHKYF 605


>gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
 gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
          Length = 596

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 154/395 (38%), Positives = 235/395 (59%), Gaps = 9/395 (2%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +++ + + R  +  + K L E   + +I+E+K SGLRGRGG GF TG+KW F  K  +D+
Sbjct: 128 ENIEECIGRDGYSALAKCLTEMTPEAVIDEIKRSGLRGRGGGGFPTGLKWEFARKYQADQ 187

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V NADE +PG   DR IM  +PH++IE   I  ++IGA    +Y+R E+    E L
Sbjct: 188 -KYVVCNADEGDPGAFMDRSIMEGDPHSVIEAMAICGYSIGASKGLVYIRAEYPLAIERL 246

Query: 137 QAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           + A+++    GLLG N  LG D    I + +GAGA++CGEETAL+ S+EG +G+P  KPP
Sbjct: 247 RIAIEQAEKYGLLGENI-LGTDFSFHIEIRYGAGAFVCGEETALIHSMEGHRGEPTTKPP 305

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G    PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N    +
Sbjct: 306 FPAESGYLNKPTNVNNVETLANIPVILNKGADWFASIGTERSKGTKVFALAGKINNVGLI 365

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T  E+I +  GGI+ G     AV  GG S  CL    +   I D+D L   GS 
Sbjct: 366 EVPMGTTLREVIYEIGGGIKNG-KKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAAGSM 423

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           +G+  +IVMD   D + A+ +  + F   ESCG+C+PCR G   ++ ++ R+ +G     
Sbjct: 424 MGSGGMIVMDED-DCMVAVAKFYLEFIVEESCGKCSPCRIGNKRLLEILTRITEGKGTME 482

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++D L  +S+ I+   +C LG  +  P+   +++F
Sbjct: 483 DLDNLRNLSQVIKDTALCGLGQTSPNPVLSTLEHF 517


>gi|83590554|ref|YP_430563.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
 gi|83573468|gb|ABC20020.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Moorella thermoacetica ATCC 39073]
          Length = 619

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 163/408 (39%), Positives = 247/408 (60%), Gaps = 8/408 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ + ++   +  + K+L   + + +I  +K SGLRGRGG GF TG+KW F  +  S  
Sbjct: 151 ESIGEYIAHDGYQALSKVLTTMKPYEVIETIKKSGLRGRGGGGFPTGLKWEFAYR--SPG 208

Query: 77  P-HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           P  Y V NADE +PG   DR I+  +PH ++EG  I ++AIGA   +IYVR E+    + 
Sbjct: 209 PVKYFVCNADEGDPGAFMDRSILEGDPHAVLEGMAIGAYAIGASQGYIYVRAEYPVAVQR 268

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ A+ +    GLLG N    G+D DI +  GAGA++CGEETALL S+EG++G+PR +PP
Sbjct: 269 LKLAISQAREQGLLGKNLFNSGFDFDIDIRLGAGAFVCGEETALLASIEGRRGEPRPRPP 328

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GL+G PT +NNVE++A +PTI+R+G  W++G G E ++GTK+F+++G +N    V
Sbjct: 329 FPAVSGLWGKPTVINNVETLANIPTIIRQGWEWFAGIGTEKSKGTKVFALAGKINNNGLV 388

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  +  ++I +  GG   G     A   GG S  C+PA  +   I DY+ L  +G+ 
Sbjct: 389 EIPMGTSLRQVIYEI-GGGIPGGKKFKAAQTGGPSGGCIPAEHLDAPI-DYENLTALGTI 446

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  +I+MD  T ++        F K ESCG+CTPCR GT  M+ ++ R+ +G  ++++
Sbjct: 447 MGSGGLIIMDEDTCMVDVAKFFMDFVKDESCGKCTPCRIGTTRMLEILNRITRGQGEEKD 506

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +DLL E+++ I+   +C LG  A  P+   I  FR      I   HRC
Sbjct: 507 LDLLVELARQIKDTALCGLGQTAPNPVLSTITYFRDEYLAHIRD-HRC 553


>gi|298528242|ref|ZP_07015646.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511894|gb|EFI35796.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 593

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 218/369 (59%), Gaps = 6/369 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II ++K S LRGRGGAGFSTG KW F  KV  D+  Y+V N +ES+PG   DR IM  +P
Sbjct: 151 IIEKIKRSKLRGRGGAGFSTGHKWEFAYKV-DDQEKYVVCNGNESDPGAFADRCIMEGDP 209

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H +IEG +I + AIGA   +IY+R  +    + L+ A+ +CY  GLLG N  + G+D+DI
Sbjct: 210 HAVIEGMMICARAIGAGKGYIYIRDGYSLAVKRLRLALKQCYERGLLGKNIFESGHDLDI 269

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            ++   GA+ICGE TAL++S+EGK+  P  +    +  G+ G PT +NN E++A VP IL
Sbjct: 270 KLYPAPGAFICGEATALVQSIEGKRAMPTPRMTRTSENGIRGKPTVINNAETLANVPKIL 329

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R GASW++G G + + GTK+FS++G V     VE  M  T  +++ K  GGI    D   
Sbjct: 330 RNGASWFAGLGTDTSGGTKVFSLTGKVKSNGLVEVPMGATLRDVVYKVGGGI--DQDRAF 387

Query: 282 AVIP-GGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
             I  GG +  C+P G    + +DY+ L   G+ +G+  ++V+D +  I+          
Sbjct: 388 KGIQLGGPTGGCVP-GSCLDSRVDYESLALAGTIMGSGGMVVLDETNCIVDTAKFFLDIT 446

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           + ESCG+CTPCR G   M  ++ER+  G  +  +++LL ++  +I   ++C  G  A  P
Sbjct: 447 QAESCGKCTPCRIGMRRMYEILERITIGNGRDGDVELLEDLGSHIRATSLCGFGMTAPNP 506

Query: 401 IQGLIKNFR 409
           +   ++ FR
Sbjct: 507 VLSTVRYFR 515


>gi|108744329|gb|ABG02414.1| FdsB [Xanthobacter flavus]
          Length = 520

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 152/411 (36%), Positives = 226/411 (54%), Gaps = 9/411 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +   SL+D  + G +  +++ +  G    + EV  SGLRGRGGAGF
Sbjct: 100 LKKQTRLTFARIGIIDPLSLTDYKAHGGYRGLERAITLGPSATVEEVVESGLRGRGGAGF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D+  Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 160 PTGIKWRTVAAAPADQ-RYIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGATR 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177
            ++Y R E+      ++ A+++   +GLLG +   S L +D+++    GAGAY+CGEETA
Sbjct: 219 GYVYCRSEYPLAFVVMEKAIEKARMAGLLGDDILGSGLAFDMEM--RMGAGAYVCGEETA 276

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGK+G  R KPP PA+ GL+G PT +NN+ S+A VP IL +G  +Y  FG   +R
Sbjct: 277 LLESLEGKRGLVRAKPPLPAHKGLFGKPTVINNLVSLATVPIILDKGGKYYRDFGMGRSR 336

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT    I+G+V Y    E +  I   EL+    GG   G   + AV  GG     LP  Q
Sbjct: 337 GTMPIQIAGNVRYGGLFETAFGIPLGELVNDIGGGTASGR-PVKAVQAGGPLGAYLPVHQ 395

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                 DY+      + +G   ++V D + D+         F  HESCG+CTPCR G+  
Sbjct: 396 FD-TPFDYEAFAAKDALIGHGGLVVFDDTADMADMAKFAMEFCAHESCGKCTPCRIGSTR 454

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            +  +E+++ G  +   + LL ++   ++  ++CALG    +P+   + +F
Sbjct: 455 GVETLEKVIAGERRDENLALLEDLCHTMKLGSLCALGGFTPYPVVSALTHF 505


>gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 631

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 152/383 (39%), Positives = 223/383 (58%), Gaps = 5/383 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +  SGLRGRGG GF TG KW F     SD   Y++ NADE +PG   DR I+  
Sbjct: 188 DELIKLITDSGLRGRGGGGFPTGKKWGFGKMYDSDV-KYIICNADEGDPGAFMDRSILEG 246

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDV 159
           +PH++IE   IA +AIGA    IY+R E+      L+ A+D+    GLLG N    G++ 
Sbjct: 247 DPHSIIEAMAIAGYAIGASEGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILNTGFNF 306

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P 
Sbjct: 307 NIEIKYGAGAFVCGEETALIHSIEGERGEPTYKPPFPAESGLWNKPTVVNNVETLANIPA 366

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  GA+WY   G E + GTK+F+++G +N    VE  M  +  E+I    GGI+ G   
Sbjct: 367 IINNGANWYKSIGTEKSNGTKVFALAGKINNVGLVEVPMGTSLREIIYDIGGGIKNG-KK 425

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++        F
Sbjct: 426 FKAVQTGGPSGGCIPASLLDIPI-DYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEF 484

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR G   ++  + ++  G   + +++ L E+S  I+  ++C LG  A  
Sbjct: 485 TVDESCGKCTPCRIGNKRLLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPN 544

Query: 400 PIQGLIKNFRPLIEERIDQYHRC 422
           P+   ++ F    E  +++  RC
Sbjct: 545 PVLSTMRYFMDEYEAHVNE-KRC 566


>gi|189425850|ref|YP_001953027.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
 gi|189422109|gb|ACD96507.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
          Length = 572

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 150/413 (36%), Positives = 241/413 (58%), Gaps = 9/413 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +SL   + RG ++++ + L E   D + + V  SGLRGRGG G+ TG+KW
Sbjct: 127 VLANSGKIDPESLDQYIGRGGYESLAQALHEMTPDDVCSGVVQSGLRGRGGGGYPTGLKW 186

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             + K    R  ++V N DE +PG   DR +M  +PH ++EG  IA +AIGA   ++YVR
Sbjct: 187 QLVRKSSGSR-KFVVANGDEGDPGAYMDRSLMESDPHRILEGMAIAGYAIGAEQGYVYVR 245

Query: 127 GEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           GE+    + L+ A+ +   +GLLGS   +S   + +DI +  GAGA++CGEETALL S+ 
Sbjct: 246 GEYPVAAQRLRKAIKDAERAGLLGSRVLDSSFSFRIDIRI--GAGAFVCGEETALLASIM 303

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G++GQPR++PP+PA  GL+GCPT +NNVE+   +P+I   G   ++  G   +RGTK+F+
Sbjct: 304 GRRGQPRIRPPYPAEAGLWGCPTLINNVETFGNIPSIFSIGPQAFNAIGNGKSRGTKVFA 363

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           + G V     +E  M I+  E++ +  GG+  G     A   GG S  C+PA ++   + 
Sbjct: 364 LCGEVVNNGLIEVPMGISLREIVFEIGGGLANG-AAFKAAQTGGPSGGCIPAEKLDTPV- 421

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DY+ L+ +GS +G+  +IVM   + ++        F   ESCG+C PCR GT  + R++ 
Sbjct: 422 DYENLQALGSIMGSGGLIVMGEQSCMVDVARFFMEFCLDESCGKCVPCRTGTVEIYRLLS 481

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+  G A +R++  L ++ + ++  ++C LG AA  P+   ++ FR   E  +
Sbjct: 482 RICNGSASQRDLQTLEQLCRMVKDTSLCGLGAAAPNPVLSTLRWFRAEYEAHV 534


>gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
 gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
          Length = 596

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 151/392 (38%), Positives = 233/392 (59%), Gaps = 4/392 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +++ + ++R  +  + K+L    D ++ E+  SGLRGRGG GF TG+KW       +DR 
Sbjct: 129 ENIGEYIARDGYAALAKVLGMQPDHVLQEIIDSGLRGRGGGGFPTGLKWKITRDAKADR- 187

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V NADE +PG   DR I+  +PH+++E   I  +  GA    IY+R E+    E L+
Sbjct: 188 KYVVCNADEGDPGAFMDRSILEGDPHSILEAMAINGYCTGASHGLIYIRAEYPLAIERLR 247

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+++    GLLG++    G+  DI + +GAGA++CGEETAL+ S+EG++G+P +KPP+P
Sbjct: 248 RAIEQAREYGLLGNDILGSGFSFDIELRYGAGAFVCGEETALIHSMEGRRGEPTVKPPYP 307

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           +  G  G PT VNNVE+ A +P IL RGA W+S  G E ++GTK+F+++G VN    +E 
Sbjct: 308 SESGYKGYPTNVNNVETYANIPPILLRGAEWFSSIGTEKSKGTKVFALAGKVNNVGLIEV 367

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  T  E+I +  GGI+ G     AV  GG S  CL    +   I DYD L   GS +G
Sbjct: 368 PMGTTLREVIFEIGGGIKNG-KKFKAVQTGGPSGGCLTEKHLDTPI-DYDNLLASGSMMG 425

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  +IVMD    ++        F   ESCG+CTPCR G   ++ +++R+ +G+ +  ++D
Sbjct: 426 SGGMIVMDEDDCMVSVAKFYLEFTVDESCGKCTPCRIGNKRLLEILDRITRGLGRDEDLD 485

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            L  +++ I   ++CALG  A  P+   ++NF
Sbjct: 486 ELQNLARVIRDSSLCALGQTAPNPVLSTLENF 517


>gi|329902903|ref|ZP_08273301.1| tungsten-containing formate dehydrogenase beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548567|gb|EGF33228.1| tungsten-containing formate dehydrogenase beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 573

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 218/371 (58%), Gaps = 16/371 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           +  + ++  ++ SGLRG GGAGF  G KW  +       P  + VN DE EPGT KDR  
Sbjct: 209 RALESVLKTMEDSGLRGLGGAGFPAGRKWRIVGAEAG--PRLMAVNIDEGEPGTFKDRTY 266

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           +  +PH  +EG +IA++A+G    +IY+R E+     + +A +D   A   L ++  +  
Sbjct: 267 LERDPHRFLEGMLIAAWAVGIDDIYIYLRDEY----HACRALLDTELAQ--LRADPPMDN 320

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT  +N E++  V
Sbjct: 321 MPAIHLRRGAGAYICGEESAMIESIEGKRGLPRLRPPYVAQVGLFGRPTLEHNFETLYWV 380

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             IL  GA W++  GR   +G + FS+SG +  P        IT  ELI+++CGG++ G 
Sbjct: 381 RRILEEGAGWFTSHGRHGRKGLRSFSVSGRIRLPGVHLAPAGITIQELIDEYCGGMQEG- 439

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L A +PGG+S   LPA  M    +D+D L+E G  +G+AA++V+ +    + A   L 
Sbjct: 440 HQLYAYLPGGASGGILPA-SMNAIPLDFDTLQEHGCFIGSAAIVVLSQHDTAVNAARNLM 498

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F+K ESCGQCTPCR GT   + ++E+       + ++ LL ++S  +   +IC LG AA
Sbjct: 499 RFFKEESCGQCTPCRVGTAKALALIEQ------PQWDVALLADLSTVMRDASICGLGQAA 552

Query: 398 AWPIQGLIKNF 408
             PI  +++ F
Sbjct: 553 PNPIDCVVRYF 563


>gi|160947614|ref|ZP_02094781.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
 gi|158446748|gb|EDP23743.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
          Length = 531

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 158/417 (37%), Positives = 237/417 (56%), Gaps = 10/417 (2%)

Query: 5   QDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62
           Q RI    +G+  + S+ + ++ G +  + K++     + ++NE+K SGLRGRGGAGF T
Sbjct: 50  QTRIALKNFGIVDEHSVKEYVALGGYYALAKVISSYTPEEVVNEMKNSGLRGRGGAGFPT 109

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW    +    +  Y+V NADE +PG   DR I+  +PH+++EG  I  +AIGA   F
Sbjct: 110 GRKWEGAMQQPPGQ-KYVVCNADEGDPGAFMDRSILEGDPHSVLEGMAICGYAIGADRGF 168

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHH--GAGAYICGEETALLE 180
           IYVR E+ +   +L+ A+ +     LLG N  +G D    V    GAGA++CGE TAL+E
Sbjct: 169 IYVRAEYPKAVINLREAIKKAEDENLLGDNI-MGTDFSFHVELRLGAGAFVCGEGTALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G PR K       GL+  PT +NNVE+ A VP I+ +G+ WY   G E++ GTK
Sbjct: 228 SIEGKRGMPRTKVYRTTVKGLFQKPTVLNNVETFANVPQIMYKGSDWYRSIGTEDSSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F++ G V     VE  M  T +E++    GG  G    + AV  GG S  C+P      
Sbjct: 288 VFALVGKVANAGLVEVPMGTTINEIV-YDIGGGTGNDKKVKAVQTGGPSGGCIPTDYFDT 346

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMM 359
            + D+  L ++GS +G+  ++VMD  TD +  I R  + F   ESCG+C PCREGT  M+
Sbjct: 347 PV-DFGSLAKIGSIMGSGGMVVMDE-TDCMVDIARFFLDFTVEESCGKCVPCREGTKRML 404

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++E++  G  +  +I+ L ++S+ I   ++C LG  AA P+   +  FR   E  I
Sbjct: 405 ELLEKITSGKGEDGDIERLEDLSETITVASLCGLGQTAANPVVSTLHYFRNEYEAHI 461


>gi|114771712|ref|ZP_01449116.1| formate dehydrogenase, beta subunit [alpha proteobacterium
           HTCC2255]
 gi|114547784|gb|EAU50674.1| formate dehydrogenase, beta subunit [alpha proteobacterium
           HTCC2255]
          Length = 565

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 158/394 (40%), Positives = 228/394 (57%), Gaps = 21/394 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           ++L D  + G +  +  +    R  D I +E+  SGLRG GGAGF +G KWSF+    ++
Sbjct: 186 ENLKDYSANGGYAELQNLRNGSRTPDQIQDEILESGLRGMGGAGFPSGKKWSFV--RMNE 243

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YL VN DE EPGT KDR  +  EPH  +EG +IA++A+ A   FIY+R E+    E 
Sbjct: 244 GVRYLAVNGDEGEPGTFKDRYFLEREPHFFLEGMLIAAWAVNAEKCFIYMRDEYPAVLEI 303

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L   +     SG++ S    GY   I +  GAGAYICGEE+A++ES+EGKKG PR +PPF
Sbjct: 304 LAKEISALETSGIVES----GY---IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPF 356

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A+VG++  PT V+NVE++  +  I R G++ +   G    +G + +S+SG V  P    
Sbjct: 357 VASVGIFNKPTLVHNVETLHWIAKISREGSAVFGAHGANGRKGLRSYSVSGRVRNPGIKL 416

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  ELIE + GG+  G  +  A  PGG S   LPA  M    +D+D L+E G+ +
Sbjct: 417 APAGTTVRELIEDYSGGMLEG-HSFKAYQPGGPSSGLLPA-SMGDIPLDFDTLQEYGTFI 474

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-E 374
           G+AAV+V+       +A   +  F++ ESCGQCTPCR G        E+ VK ++Q + +
Sbjct: 475 GSAAVVVLSNHDSAKEAALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMSQDKWD 527

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            +LL E+S  +   +IC LG AA  PI+ +IK+F
Sbjct: 528 QNLLEELSVAMVDASICGLGQAAPNPIRMVIKHF 561


>gi|255019943|ref|ZP_05292017.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970602|gb|EET28090.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus
           ATCC 51756]
          Length = 417

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 144/382 (37%), Positives = 216/382 (56%), Gaps = 6/382 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G +  + + L+     +I EV+ SGLRG GGAGF TG+KW     V +  P YLV N DE
Sbjct: 23  GGYTGLQRALDMAPAELIAEVERSGLRGCGGAGFPTGVKWRLR-GVDAPTPRYLVCNLDE 81

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           +EPG+ KDR ++   PH ++EG +IA+ A+G   A +++RGE+      L+ A+    A+
Sbjct: 82  TEPGSFKDRALLLGAPHQILEGMLIAAHALGVQYAVVFIRGEYAEGAAVLERALAAVRAA 141

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           GLL      G  + + +H   G YICGE++A+L ++EG++  PR KPP  A  GL+  PT
Sbjct: 142 GLL---ELPGGALRLDIHLSLGRYICGEDSAILNAIEGRRPNPRKKPPHIAQQGLWLQPT 198

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
           TVNN E+ A +P ILR G   +   G  +  GTKL+++SG V  P   E  M  T  E++
Sbjct: 199 TVNNAETFAQLPGILRLGVDAWRALGVHDGVGTKLYNVSGPVRRPGVFELPMGTTLAEIL 258

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           E H GG   G   +  V+PGGSS P +   +     M +D + ++GS LGT  VIV+D  
Sbjct: 259 ETHAGGALPG-RRIRGVLPGGSSTPFVLPDKFH-TPMHFDAMAKIGSRLGTGGVIVLDDG 316

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
              +  +   + F+  ESCG CTPCREG  ++  ++ER+ +G+    +ID +  +   I 
Sbjct: 317 HCPVDFLLATTRFFARESCGFCTPCREGLPYIQWLLERIEQGLGTMADIDKIRSLGAEIA 376

Query: 387 GRTICALGDAAAWPIQGLIKNF 408
             + CAL   A  P+   +++F
Sbjct: 377 PNSFCALAPGALMPVLSGLESF 398


>gi|257086846|ref|ZP_05581207.1| NADH dehydrogenase [Enterococcus faecalis D6]
 gi|256994876|gb|EEU82178.1| NADH dehydrogenase [Enterococcus faecalis D6]
 gi|315027369|gb|EFT39301.1| HymB family protein [Enterococcus faecalis TX2137]
          Length = 432

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAG YICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGTYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATGRP-LKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14]
 gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14]
          Length = 635

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 156/399 (39%), Positives = 239/399 (59%), Gaps = 9/399 (2%)

Query: 15  LQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ + ++R G++   D +L K    +I+ +K SGLRGRGG GF TG+KW F  K  
Sbjct: 164 IDSENIEEYIAREGYFALADCLLNKQPADVIDVIKRSGLRGRGGGGFPTGLKWEFASKQV 223

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           SD   Y+V NADE +PG   DR IM  +PH+++E   I  ++IG+    +Y+R E+    
Sbjct: 224 SDV-KYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGSSKGLVYIRAEYPLAI 282

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
             L+ A+++  A GLLG +  LG D   DI + +GAGA++CGEETAL+ S+EGK+G+P L
Sbjct: 283 NRLKKAIEQARAYGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTL 341

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N  
Sbjct: 342 KPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFASIGTERSKGTKVFALAGKINNV 401

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M  T  E+I +  GG   G     AV  GG S  CL    +   I D+D L   
Sbjct: 402 GLIEVPMGTTLREVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAA 459

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           GS +G+  +IVMD   D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G  
Sbjct: 460 GSMMGSGGMIVMDED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGRG 518

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            ++++D L  + + I+   +C LG  +  P+   + NFR
Sbjct: 519 TEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFR 557


>gi|77919233|ref|YP_357048.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77919440|ref|YP_357255.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545316|gb|ABA88878.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77545523|gb|ABA89085.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 150/412 (36%), Positives = 232/412 (56%), Gaps = 8/412 (1%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAG 59
           +  Q RI T   G +  +S+   ++ G +  + K L + +   +I  +K SGLRGRGGAG
Sbjct: 1   MATQLRIATRNSGFIDPESVESYIAVGGYQALGKCLSEMKPADVIELMKNSGLRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F  K  SD  H +V NADE +PG   DR ++  +PH+++E   I ++AIG +
Sbjct: 61  FPTGVKWGFAAKYDSDIKH-VVCNADEGDPGAFMDRAVLEGDPHSVLEAMAIGAYAIGGN 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177
              IY+R E+      L+ A+++    G+LG N  +G D   D+ + +GAGA++CGEETA
Sbjct: 120 KGTIYIRAEYPLAIARLKMAIEQAKEMGVLGDNI-MGTDFCFDLELKYGAGAFVCGEETA 178

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+P  KPPFPA  G +  PT VNNVE++A +P I+ +GA W++  G E ++
Sbjct: 179 LINSMEGNRGEPYTKPPFPAEAGYWNKPTIVNNVETLANIPAIIMKGADWFNKIGTETSK 238

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F I G +     +E  M  T  E+I    GGI GG +   AV  GG S   L    
Sbjct: 239 GTKVFCICGKIANVGLIEVPMGTTLKEVIYDIGGGIPGGKE-FKAVQTGGPSGGALTYKD 297

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I DY+ L    S +G+  +IVMD    ++        F   E+CG+CTPCR G+  
Sbjct: 298 LDAPI-DYENLVARQSMMGSGGMIVMDEEDCMVSVAKFFLDFTMDETCGKCTPCRIGSKR 356

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +  +++++  G   + +++ L  +S NI+   +C LG     P+   ++ F 
Sbjct: 357 IYELLDKITIGQGTEADLEKLRSLSVNIKDTALCGLGQTMPNPVLSTMRVFE 408


>gi|27377427|ref|NP_768956.1| NADH-ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum
           USDA 110]
 gi|27350571|dbj|BAC47581.1| blr2316 [Bradyrhizobium japonicum USDA 110]
          Length = 567

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 151/381 (39%), Positives = 217/381 (56%), Gaps = 27/381 (7%)

Query: 34  KILEKGR------DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           K+LE+ R      D I+  ++ S LRG GGAGF TG KW  +  +    P  + VN DE 
Sbjct: 199 KLLERLRSGAVSKDDILRLLEDSSLRGLGGAGFPTGRKWRAV--LGEPGPRLMAVNGDEG 256

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EPGT KDR  + ++PH  IEG +I +  + A   +IY+R E+   RE L+  + +    G
Sbjct: 257 EPGTFKDRVYLNNDPHRFIEGTLIGAHIVEASDVYIYIRDEYPAAREILEREIAKLPPGG 316

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                        + +  GAGAYICGEE++LLES+EGK+G PR KPP+P  VGL+G PT 
Sbjct: 317 -----------PTLHMRRGAGAYICGEESSLLESIEGKRGLPRHKPPYPFQVGLFGLPTL 365

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           +NNVE++  V  I+ +GA W+ G GR    G + FS+SG V  P        IT  ELI+
Sbjct: 366 INNVETLWWVRDIVEKGADWWKGHGRHERHGLRSFSVSGRVKNPGMKLAPSGITVRELID 425

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
           ++CGG+  G     A +PGG+S   LPA  M    +D+  L++ G  +G+AA++++ +  
Sbjct: 426 EYCGGMADG-HTFYAYLPGGASGGILPA-SMDDIPLDFGTLEKYGCFIGSAAIVILSQKD 483

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +  A   L  F++ ESCGQCTPCR GT     +M++ V   A      LL E+S+ +  
Sbjct: 484 SVRAAALNLMKFFEDESCGQCTPCRVGTQKAALLMQKPVWNRA------LLEELSQAMRD 537

Query: 388 RTICALGDAAAWPIQGLIKNF 408
            +IC LG AA+ P+  +IK F
Sbjct: 538 ASICGLGQAASNPLTTVIKYF 558


>gi|62632270|gb|AAX89149.1| HoxF [Allochromatium vinosum]
          Length = 538

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 153/421 (36%), Positives = 245/421 (58%), Gaps = 11/421 (2%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q RI     GL    SL   ++ G +  + + L E     ++ EV  SGLRGRGG 
Sbjct: 119 FFSRQQRIVLEHSGLIDPDSLRGYIAVGGYAALVRALTEMTPADVLREVTTSGLRGRGGG 178

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KWS + K+   +  Y+V NADE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 179 GYPTGLKWSTIAKMPPGQ-KYVVCNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGA 237

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEE 175
              ++YVR E+    E L+ A+ +   +G LG+   +++  ++V+I    GAGA++CGEE
Sbjct: 238 SKGYVYVRAEYPLAVERLETAIRKAKRAGFLGAKVADTQFAFEVEI--RLGAGAFVCGEE 295

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ S+EG +GQPR +PP+PA  GL+GCPT +NNVE+ A +  I+R G  W++  G E 
Sbjct: 296 TALMASIEGLRGQPRPRPPYPAESGLWGCPTLINNVETFANIAPIIREGGDWFAAIGTEG 355

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           ++GTK+F+++G +     +E  M  +  ++IE   GGI  G     AV  GG S  C+P 
Sbjct: 356 SKGTKVFALAGKIKNTGLIEVPMGTSLRDIIEVIGGGIPDG-RAFKAVQTGGPSGGCIPR 414

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +   + DYD LK +G+ +G+  +IVMD ++ ++  + R   F   ESCG+C PCR GT
Sbjct: 415 RHLDIPV-DYDSLKTLGTIMGSGGLIVMDETSCMVD-VARFMEFCMSESCGKCIPCRAGT 472

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             M  +++ L K    + ++ LL ++   +   ++C LG  A  P+   ++ FR   E +
Sbjct: 473 WQMHALLDTLTKAEGTRADLALLEDLCDVVRATSLCGLGQTAPNPVLSTLRYFRDEYEAK 532

Query: 416 I 416
           +
Sbjct: 533 L 533


>gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
          Length = 596

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 160/381 (41%), Positives = 230/381 (60%), Gaps = 5/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I EVK SGLRGRGG GF TG+KW F      + P Y+V NADE +PG   DR I+  +P
Sbjct: 154 VIEEVKKSGLRGRGGGGFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSILEGDP 212

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H+++E   IA +AIGA+  +IYVR E+    + L+ A+++    GLLG N    G+D DI
Sbjct: 213 HSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDI 272

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETALL S+ G++G+PR +PPFPA  G++  PT +NNVE+ A +P I+
Sbjct: 273 EIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPII 332

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA W+S  G E ++GTK+F+++G VN    +E  M  T  E+I +  GGI  G     
Sbjct: 333 LNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNG-KKFK 391

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A   GG S  C+PA  +   I DYD L  +GS +G+  ++VMD  T ++        F  
Sbjct: 392 AAQTGGPSGGCIPAEHLDTPI-DYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTV 450

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  M+ ++E++  G  ++ +I+ L E++K I+   +C LG  A  P+
Sbjct: 451 DESCGKCAPCRIGTRRMLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPV 510

Query: 402 QGLIKNFRPLIEERIDQYHRC 422
              I+ FR   E  I +  RC
Sbjct: 511 LSTIRYFRDEYEAHIKE-KRC 530


>gi|257463175|ref|ZP_05627575.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           sp. D12]
 gi|317060766|ref|ZP_07925251.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12]
 gi|313686442|gb|EFS23277.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12]
          Length = 594

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 152/407 (37%), Positives = 233/407 (57%), Gaps = 5/407 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           + R+  N   +  +S+ D ++ G +  + K L E   + +I E++ +GLRGRGG GF TG
Sbjct: 114 ERRVLRNCGLINPESIEDYLAEGGFLAIQKALTEMTPEQVIEEIQKAGLRGRGGGGFPTG 173

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KW    K   +   Y+V NADE +PG   DR I+  +P  +IEG +IA +AIGA  A +
Sbjct: 174 NKWEIALKQAGEE-KYIVCNADEGDPGAFMDRSILEGDPCGVIEGMMIAGYAIGASQALV 232

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+      L+ A+++    G LG N     +  D+ +  GAGA++CGEETAL++S+
Sbjct: 233 YIRAEYPLAISRLEKAIEQARKKGYLGKNVFGTSFSFDVTLKFGAGAFVCGEETALIQSM 292

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           +G++G+P+ KPP+PA  G  G PT VNNVE++  VP I+R G+ W+   G E++ GTK+F
Sbjct: 293 QGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIRYGSDWFREIGTESSPGTKVF 352

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G VN    VE  M  T  E+I    GGI+ G     AV  GG S  CL    +  +I
Sbjct: 353 ALAGKVNNVGLVEVPMGTTLREIIFDIGGGIKNG-KRFKAVQTGGPSGGCLTNKDLDISI 411

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            D+D L   GS +G+  +I+MD    ++        F   ESCG+CTPCR G   +  ++
Sbjct: 412 -DFDSLSAKGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYEIL 470

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            R+ +G  +  ++ LL E+S  I+  ++C LG  +  P+   +K FR
Sbjct: 471 SRITEGEGRMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFR 517


>gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 596

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 160/381 (41%), Positives = 230/381 (60%), Gaps = 5/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I EVK SGLRGRGG GF TG+KW F      + P Y+V NADE +PG   DR I+  +P
Sbjct: 154 VIEEVKKSGLRGRGGGGFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSILEGDP 212

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H+++E   IA +AIGA+  +IYVR E+    + L+ A+++    GLLG N    G+D DI
Sbjct: 213 HSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDI 272

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETALL S+ G++G+PR +PPFPA  G++  PT +NNVE+ A +P I+
Sbjct: 273 EIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPII 332

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA W+S  G E ++GTK+F+++G VN    +E  M  T  E+I +  GGI  G     
Sbjct: 333 LNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNG-KKFK 391

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A   GG S  C+PA  +   I DYD L  +GS +G+  ++VMD  T ++        F  
Sbjct: 392 AAQTGGPSGGCIPAEHLDTPI-DYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTV 450

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  M+ ++E++  G  ++ +I+ L E++K I+   +C LG  A  P+
Sbjct: 451 DESCGKCAPCRIGTRRMLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPV 510

Query: 402 QGLIKNFRPLIEERIDQYHRC 422
              I+ FR   E  I +  RC
Sbjct: 511 LSTIRYFRDEYEAHIKE-KRC 530


>gi|312904133|ref|ZP_07763301.1| HymB family protein [Enterococcus faecalis TX0635]
 gi|310632609|gb|EFQ15892.1| HymB family protein [Enterococcus faecalis TX0635]
 gi|315578478|gb|EFU90669.1| HymB family protein [Enterococcus faecalis TX0630]
          Length = 432

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKSRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATGRP-LKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+C PCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCIPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|260220425|emb|CBA27950.1| NADH-quinone oxidoreductase subunit F 2 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 600

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 149/394 (37%), Positives = 225/394 (57%), Gaps = 30/394 (7%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           G +L+ ++S+G  D          + +I  ++ SGLRG GGAGF  G KW    ++  D+
Sbjct: 230 GYALAAALSQGTQDA---------ESVIKAMEDSGLRGLGGAGFPAGRKW----RIVRDQ 276

Query: 77  P--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           P    + VN DE EPGT KDR  +  +PH  +EG ++A+  +G    +IY+R E+   R 
Sbjct: 277 PAPRLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLVAAQVVGTTACYIYLRDEYHGCRA 336

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+  + +      L +N      V I +  GAGAYICGEE+A++ES+EGK+G+PR++PP
Sbjct: 337 ILETEIAK------LQANPPCPLPV-IELRRGAGAYICGEESAMIESIEGKRGEPRMRPP 389

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           + A VGL+G PT  +N E++  V  I+ +GASW+S FGR   +G + FS+SG V +P   
Sbjct: 390 YIAQVGLFGRPTLEHNFETLYWVRDIVEKGASWFSSFGRNGRKGLRSFSVSGRVKFPGVK 449

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                I+  EL++++CGG+  G  NL A +PGG+S    PA  +    +D+D L+  G  
Sbjct: 450 LAPAGISVAELVDEYCGGMLDG-HNLYAYLPGGASGGIFPA-SLSHVPLDFDTLQPHGGF 507

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAVIV+ +      A   +  FY HESCGQCTPCR GT     +ME  V       +
Sbjct: 508 IGSAAVIVLSQHDKARDAALNMMRFYAHESCGQCTPCRVGTAKAATLMESPVWDHTTLED 567

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++++      +   +IC LG AA  P++ + K F
Sbjct: 568 LNVV------MTDASICGLGQAAPNPVRCVQKYF 595


>gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 154/422 (36%), Positives = 239/422 (56%), Gaps = 7/422 (1%)

Query: 4   DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFS 61
           +Q+R +  N   +  K++ D ++ G +  + + L       ++ EVK + LRGRGGAGF 
Sbjct: 134 NQERNVICNNIKIDSKNIDDYLANGGYSALGEALGSMTPVEVLEEVKKANLRGRGGAGFP 193

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G+KW    +   D   Y++VNADE +PG   DR ++   PH+++EG +I  +AIGA   
Sbjct: 194 AGVKWEGS-RNAPDPVKYVIVNADEGDPGAFMDRAVLEGNPHSVLEGLIIGGYAIGAQEG 252

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+    E++  A+ +  A GLLG N    GY+  + V+ GAGA++CGE TAL+ 
Sbjct: 253 YIYVRHEYPLAVENITLAIQQAEACGLLGENIFGSGYNFRVFVNQGAGAFVCGESTALMT 312

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG+ G+PR K      VGL+G PT +NNVE+ A VP I+ +GA W++  G E+++GTK
Sbjct: 313 SIEGRAGEPRPKYVRSNVVGLWGHPTVLNNVETWANVPLIINKGADWFTSIGTESSKGTK 372

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G +     VE  M I+  +++ K  GG   G     AV  GG S  C+P   +  
Sbjct: 373 IFSLVGKIANTGLVEVPMGISLRDIVFKI-GGGIPGGKKFKAVQTGGPSGGCIPESLLDL 431

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +  +D L   GS +G+  +IVMD  T ++        F   ESCG+C PCREG   M  
Sbjct: 432 PV-GFDELTAAGSMMGSGGMIVMDEDTCMVDTARYFVKFLTDESCGKCVPCREGLRQMDN 490

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ +G   + +I+LL  +++  +  ++CALG +A  P    ++ FR   E  I +  
Sbjct: 491 ILTRITEGKGGEGDIELLEALAETAQEASLCALGKSAPNPFLSTLQYFRDEYEAHIKE-K 549

Query: 421 RC 422
           RC
Sbjct: 550 RC 551


>gi|293383048|ref|ZP_06628966.1| protein HymB [Enterococcus faecalis R712]
 gi|293388209|ref|ZP_06632730.1| protein HymB [Enterococcus faecalis S613]
 gi|312907363|ref|ZP_07766354.1| HymB family protein [Enterococcus faecalis DAPTO 512]
 gi|312909979|ref|ZP_07768827.1| HymB family protein [Enterococcus faecalis DAPTO 516]
 gi|291079713|gb|EFE17077.1| protein HymB [Enterococcus faecalis R712]
 gi|291082393|gb|EFE19356.1| protein HymB [Enterococcus faecalis S613]
 gi|310626391|gb|EFQ09674.1| HymB family protein [Enterococcus faecalis DAPTO 512]
 gi|311289937|gb|EFQ68493.1| HymB family protein [Enterococcus faecalis DAPTO 516]
          Length = 432

 Score =  258 bits (660), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      + + A++VMD
Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVSSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|299134801|ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
 gi|298590611|gb|EFI50814.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
          Length = 745

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 146/369 (39%), Positives = 208/369 (56%), Gaps = 21/369 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I+  ++++ LRG GGAGF TG KW  +  +    P  + +N DE EPGT KDR  + 
Sbjct: 387 KEDILKALESASLRGLGGAGFPTGRKWRAV--LGEPGPRLMAINGDEGEPGTFKDRFYLE 444

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            +PH  IEG +I +  + A   +IY+R E+   RE L   +    A G            
Sbjct: 445 TDPHRFIEGMLIGAHIVEAAEVYIYLRDEYPASREILAREIARLPAGG-----------P 493

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            + +  GAGAYICGEE+ALLES+EGK+G PR KPP+P  VGL+G PT +NNVE++  V  
Sbjct: 494 TLHLRRGAGAYICGEESALLESIEGKRGMPRHKPPYPFQVGLFGLPTLINNVETLWWVRD 553

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ +G  W+   GR +  G + +S+SG V  P        +T  ELIE+ CGG+  G   
Sbjct: 554 IVEKGGEWWQAQGRNDRHGLRSYSVSGRVKNPGVKLAPAGVTITELIEEFCGGMADG-HK 612

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A +PGG+S   LPA  M    +D+  L++ G  +G+AAV+V+    D+  A   L  F
Sbjct: 613 FRAYLPGGASGGILPA-SMNDIPLDFGTLEKYGCFIGSAAVVVLSDKDDVKDAALNLMKF 671

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           ++ ESCGQCTPCR GT     +ME       +    DLL E+S+ +   +IC LG AA+ 
Sbjct: 672 FEDESCGQCTPCRVGTQKAAALME------TRAWNRDLLNELSQTMRDASICGLGQAASN 725

Query: 400 PIQGLIKNF 408
           P+  +IK F
Sbjct: 726 PLTSVIKYF 734


>gi|221639519|ref|YP_002525781.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131]
 gi|221160300|gb|ACM01280.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131]
          Length = 416

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/409 (37%), Positives = 222/409 (54%), Gaps = 15/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---D 75
           +L++  + G ++ V++        II+ V+A+ L GRGGAGF  G KW FMP+  +   D
Sbjct: 18  TLAEWRAEGGYEAVERARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGTSPGD 77

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YL+VN DE EPG  KDR ++   PH +IEG +I + A  A  A + +R E+     +
Sbjct: 78  GPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRPGIAA 137

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           ++ A+ E   +GLLG       D+ I VH  AG YI GEETAL+ +LEG +  PR +PPF
Sbjct: 138 VERAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRKRPPF 190

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PTTVNNVE+I++VP IL  G   +    R    GTKL+ +SG V  P   E
Sbjct: 191 PAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRPGLFE 250

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  ELIE+  GG+ G    L A  PGG +       Q+    +D+  + + GS  
Sbjct: 251 APMGTTARELIER-AGGVSGD-GRLRAFQPGGGASGFFGPDQL-DLPLDFGHVAKAGSMF 307

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  +IV+D +   +  + R   FY  ESCG CTPCREG   + ++++R   G  ++ ++
Sbjct: 308 GTGMLIVLDGTACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGRRADL 367

Query: 376 DLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +LL   +      GR+ C L   A  P+   +  F    E R+ +  R 
Sbjct: 368 ELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGERA 416


>gi|315174470|gb|EFU18487.1| HymB family protein [Enterococcus faecalis TX1346]
          Length = 432

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R ++  Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKKFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK  +PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTERPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G  +L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|255975952|ref|ZP_05426538.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T2]
 gi|307279196|ref|ZP_07560254.1| HymB family protein [Enterococcus faecalis TX0860]
 gi|255968824|gb|EET99446.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T2]
 gi|306504321|gb|EFM73533.1| HymB family protein [Enterococcus faecalis TX0860]
          Length = 432

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPIILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +   +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLTDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|71280105|ref|YP_268785.1| formate dehydrogenase subunit beta [Colwellia psychrerythraea 34H]
 gi|71145845|gb|AAZ26318.1| formate dehydrogenase, beta subunit [Colwellia psychrerythraea 34H]
          Length = 534

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 149/398 (37%), Positives = 225/398 (56%), Gaps = 10/398 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM--PKVCS-D 75
           S+ D +    +  +   L+     I++E+K SGLRGRGGA F TG+KW  +   KV S D
Sbjct: 118 SIEDYIKHQGFIGLSNALKLSAQGIVDEMKISGLRGRGGAAFPTGIKWQTVLDAKVTSSD 177

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +  Y+V NADE + GT  DR IM  +P +LIEG +IA  A+GA   +IY+R E+ + ++ 
Sbjct: 178 QKKYIVCNADEGDSGTYSDRLIMEADPFSLIEGMIIAGIAVGATQGYIYLRSEYPQAQKI 237

Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ A+   Y    LG   +   +  D+ V  GAGAYICGEET+LLESLEGK+G  R KPP
Sbjct: 238 LEQAIANAYQDNYLGDAIQGTQHQFDLEVRIGAGAYICGEETSLLESLEGKRGLVRAKPP 297

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            PA  GL+G PTTVNNV S+A VPTIL +GA +Y  +G   +RGT  F ++G++     V
Sbjct: 298 LPAITGLFGQPTTVNNVISLATVPTILAKGAQYYQDYGVGRSRGTLPFQLAGNIKQGGLV 357

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E +   T  +L+     G   G + + A+  GG     LP  Q +   +DY+    +G+ 
Sbjct: 358 ELAFGTTLADLVNDFGAGTYTG-ETMKAIQVGGPLGAYLPKYQWQTP-LDYEAFSSIGAV 415

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG   ++V D S  + +       F   ESCG+CTPCR G+   + V+++++        
Sbjct: 416 LGHGGIVVFDDSVSMTEQARFAMEFCGVESCGKCTPCRIGSTRGVEVIDKMITAHEHDEP 475

Query: 375 I----DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           I    +LL ++   +   ++CA+G     P++ ++++F
Sbjct: 476 IEALNELLVDLCDTMVDGSLCAMGGMTPIPVRSVMQHF 513


>gi|257466530|ref|ZP_05630841.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 580

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/409 (37%), Positives = 236/409 (57%), Gaps = 9/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTG 63
           + RI  N   +  +S+ D + +  +  + K L++     +I E++ SGLRGRGG GF TG
Sbjct: 100 ERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFPTG 159

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW    K   +   Y+V NADE +PG   DR I+  +P+ +IEG +IA +AIGA+ A I
Sbjct: 160 IKWEIASKQEGNE-KYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHALI 218

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180
           Y+R E+      LQ A+++    G LG +   +   +DVD+    GAGA++CGEETAL++
Sbjct: 219 YIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVDL--KFGAGAFVCGEETALIQ 276

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S++G++G+P+ KPP+PA  G  G PT VNNVE++  VP I++ G+ W+   G E + GTK
Sbjct: 277 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 336

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G VN    VE  M  T  E+I +  GGI+ G     AV  GG S  CL    +  
Sbjct: 337 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIKNG-KRFKAVQTGGPSGGCLTNKDLDI 395

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           +I D+D L   GS +G+  +I+MD    ++        F   ESCG+CTPCR G   +  
Sbjct: 396 SI-DFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 454

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ R+ +G     ++ LL E+S  I+  ++C LG  +  P+   +K FR
Sbjct: 455 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFR 503


>gi|311694464|gb|ADP97337.1| formate dehydrogenase, beta subunit [marine bacterium HP15]
          Length = 571

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/395 (40%), Positives = 235/395 (59%), Gaps = 21/395 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + L+D  S G +  + K   +GR   D +  E++ +GLRG GGAGF T  KW  +     
Sbjct: 183 QKLADYRSAGGY-QLLKDCREGRVTVDSLAEELEHAGLRGLGGAGFPTYRKWQAV--RAE 239

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P Y V+NADE EPGT KDR  +  EPH  +EG +++++A+ A   +IY+R E+     
Sbjct: 240 PGPRYAVINADEGEPGTFKDRYYLEREPHGFLEGALVSAWAVEAQALYIYLRDEYPGLLV 299

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+ A+ E   +G++    + G+   +I+  GAGAYICGEE+AL+ESLEGK G+PR +PP
Sbjct: 300 VLKDAIAELETAGIV----EPGF---VILRRGAGAYICGEESALIESLEGKPGKPRHRPP 352

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           F A  GL+G PT VNNVE++  +P I  +GA WY+  GR   +G + FS+SG V  P   
Sbjct: 353 FVAQKGLFGQPTLVNNVETVYWIPRIHAQGAEWYASQGRHGRKGLRSFSVSGRVARPGVH 412

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                +T +ELIE++CGG+  G   L+A +PGG+S   LPA +     +D+D L+E G  
Sbjct: 413 VAPAGVTLNELIEEYCGGMAEG-HRLVAYLPGGASGGILPASKA-DIPLDFDTLQEHGCF 470

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAVIV+    D+  A   L  F+  ESCGQCTPCR GT  M+ ++ER         +
Sbjct: 471 IGSAAVIVLSDQDDLQAAAANLLGFFADESCGQCTPCRVGTEKMLTLLER------DTWD 524

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
              L +++  +   +IC LG AA  P+  L+++FR
Sbjct: 525 EQTLQQLAAVMADASICGLGQAAPNPVLSLLRDFR 559


>gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
 gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
          Length = 595

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 146/376 (38%), Positives = 221/376 (58%), Gaps = 4/376 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E   D +I  +K SGLRGRGGAGF T +KW+F  K       Y+  NADE +PG   D
Sbjct: 145 LTEMTPDDVIEILKTSGLRGRGGAGFPTWLKWNFA-KAQPAGQKYVCCNADEGDPGAFMD 203

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R ++  +PH ++E   IA + IG++  +IYVR E+    + L+ A+++    G LG +  
Sbjct: 204 RSVLEGDPHAVLEAMTIAGYTIGSNQGYIYVRAEYPIAVKRLEIAINQSREMGFLGKDIF 263

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D DI +  GAGA++CGEETAL+ S+EG +G+PR +PPFPA  GL+G P+ +NNVE+
Sbjct: 264 GSGFDFDIELRLGAGAFVCGEETALMTSIEGHRGEPRPRPPFPAVKGLFGKPSILNNVET 323

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A +P I+ +G  W++  G E ++GTK+F++ G ++    VE  M  T  E+IE+  GGI
Sbjct: 324 WANIPQIILKGPEWFASMGTEKSKGTKVFALGGKIHNTGLVEVPMGTTLREIIEEIGGGI 383

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
             G     A   GG S  C+PA  +   I DYD L  +GS +G+  +IVMD    ++   
Sbjct: 384 PNG-KKFKAAQTGGPSGGCIPASLIDTEI-DYDNLLAIGSMMGSGGLIVMDEDNCMVDIA 441

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                F   ESCG+CTPCR GT  +  +++++ +G A   ++D + E+   I+   +C L
Sbjct: 442 KFFLEFTVDESCGKCTPCRIGTKRLYEMLDKITRGNATLEDLDKMEELCYYIKENALCGL 501

Query: 394 GDAAAWPIQGLIKNFR 409
           G  A  P+   ++ FR
Sbjct: 502 GQTAPNPVLSTLRYFR 517


>gi|296448075|ref|ZP_06889978.1| NADH dehydrogenase (quinone) [Methylosinus trichosporium OB3b]
 gi|296254432|gb|EFH01556.1| NADH dehydrogenase (quinone) [Methylosinus trichosporium OB3b]
          Length = 517

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 148/391 (37%), Positives = 221/391 (56%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L D ++ G    + K  E G   +I EV  SGLRGRGGAGF  G+KW  +    +DR  
Sbjct: 116 NLDDYVAHGGGQGLAKAFEIGPAKVIEEVTKSGLRGRGGAGFPAGIKWKTVADAPADR-R 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P  LIEG  I  +AIGA   FIY+R E+ +  E L  
Sbjct: 175 YVVTNADEGDSGTFADRMVMEGDPFVLIEGMTICGYAIGASKGFIYLRAEYPQCAEVLTE 234

Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++    +G LG N +  G+  DI +  GAGAY+CGEET+LLESLEGK+G  R KPP PA
Sbjct: 235 ALEAARKAGWLGPNVRGSGFAFDIELRIGAGAYVCGEETSLLESLEGKRGIVRAKPPLPA 294

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           +VG    PT VNNV ++A  P IL +G  +Y+  G   +RGT    I+G+V +    E  
Sbjct: 295 HVGFMSRPTVVNNVLTLATAPAILAKGGEYYASLGVGRSRGTMPLQIAGNVKFGGLYETP 354

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +T  E++    GG   G   + AV  GG     +P   +     DY+  ++  S +G 
Sbjct: 355 FGLTLGEIVNDIGGGSLSG-RPVRAVQCGGPLGAYVPP-SLFDTPFDYEAFQKHDSLIGH 412

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ +       F   ESCG+CTPCR G+   +  ++R+V+G+  +  I+L
Sbjct: 413 GGLVVFDDTVDMAQMARFGMEFCAIESCGKCTPCRIGSTRGVETIDRIVEGVDVEANIEL 472

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++   ++  ++CALG  A +P++  ++++
Sbjct: 473 LSDLCHTMKFGSLCALGGFAPYPVESALRHY 503


>gi|27378248|ref|NP_769777.1| NADH dehydrogenase I chain F [Bradyrhizobium japonicum USDA 110]
 gi|27351395|dbj|BAC48402.1| NADH dehydrogenase I chain F [Bradyrhizobium japonicum USDA 110]
          Length = 518

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/395 (37%), Positives = 220/395 (55%), Gaps = 8/395 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +SL D  + G +  +++ L  G + I+ EV ASGLRGRGGAGF TG+KW  + +  +DR 
Sbjct: 115 RSLEDYRAHGGYKGLERALSLGSEAILTEVTASGLRGRGGAGFPTGIKWKTVAQAKADR- 173

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            ++V NADE + GT  DR IM  +P  +IEG   A   +GA   +IY+R E+    E+++
Sbjct: 174 KFIVCNADEGDSGTFADRMIMEGDPFLVIEGMTTAGITVGATKGYIYIRSEYPHAVEAMK 233

Query: 138 AAVDECYASGLLGSNSKLG---YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           AA+      G LG   K+G   Y  D+ V  GAGAY+CGEET+LLESLEG++G  R KPP
Sbjct: 234 AAIQAAKRGGYLGD--KIGGSTYSFDLEVRVGAGAYVCGEETSLLESLEGRRGIVRAKPP 291

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            PA+ GL+G PT +NNV S A +P IL  GA  Y+ FG   +RGT    ++G++ +    
Sbjct: 292 LPAHHGLFGKPTVINNVLSFAAIPFILAEGAKAYADFGMGRSRGTMPIQLAGNIRHGGLY 351

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E +  +T  EL++   GG   G   + AV  GG      P   +     DY+        
Sbjct: 352 ETAFGVTLGELVDDIGGGTFTGRP-VRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARDGL 409

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G   ++V D S D+ +       F   ESCG+CTPCR G+   +  +E+++ G      
Sbjct: 410 IGHGGIVVFDDSVDMRRQARFAMEFCAVESCGKCTPCRIGSTRGVETIEKIINGERVSEN 469

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + L+ ++   ++  ++CALG    +P+   +K+FR
Sbjct: 470 LALVEDLCNTMKFGSLCALGGFTPYPVLSALKHFR 504


>gi|222053345|ref|YP_002535707.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562634|gb|ACM18606.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 637

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/409 (37%), Positives = 238/409 (58%), Gaps = 7/409 (1%)

Query: 4   DQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFS 61
           +Q R+   N   L   S+ D ++ G +  ++K + +   + ++  VK SGLRGRGG GF 
Sbjct: 133 NQLRLLIGNNIKLDPTSIDDYIAIGGYTALEKAVCQMKPEQVVGLVKESGLRGRGGGGFP 192

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G KW F  +   D   Y+VVNADE +PG   DR ++   PH ++EG +I ++AIGAH  
Sbjct: 193 SGNKWEFT-RNAPDPVKYVVVNADEGDPGAFMDRALLEGSPHAVLEGLIIGAYAIGAHEG 251

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           F+YVR E+     ++  A+ +    G LG N    G+D  + V  GAGA++CGEETAL+ 
Sbjct: 252 FLYVRQEYPLAVHNITLAIQKAEEYGFLGKNILGSGFDFTVEVAQGAGAFVCGEETALIR 311

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+P+ +PPFPA  GL+  PT +NNVE+ A +P I+ +G + ++  G   ++GTK
Sbjct: 312 SLEGKTGEPKPRPPFPAVRGLWNKPTNINNVETWANIPLIINKGPAAFASVGTGGSKGTK 371

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G V     VE  M IT  +++ K  GGI  G     AV  GG +  C+P   +  
Sbjct: 372 IFSLVGKVKNTGLVEVPMGITLRDIVYKIGGGIP-GEKKFKAVQTGGPAGGCMPESLLDM 430

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            + D+D L + GS +G+  +IV+D  T ++        F   ESCG+C PCREG   M+ 
Sbjct: 431 EV-DFDQLTKAGSMMGSGGMIVLDEETCMVDFARFFLSFLAEESCGKCVPCREGIQQMLA 489

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++  L  G  +K +++LL ++++ +   ++CALG  A  P+   +K+FR
Sbjct: 490 ILNDLTHGKGKKGDLELLEQLTE-VSSASLCALGKGAPNPVLSTLKHFR 537


>gi|257089783|ref|ZP_05584144.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus
           faecalis CH188]
 gi|256998595|gb|EEU85115.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus
           faecalis CH188]
          Length = 417

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 16  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 74

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 75  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 134

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 135 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 194

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 195 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKSRGLYEVNLGTPLEEII 254

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 255 YGEQYGGGSATGRP-LKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 313

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+C PCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 314 DSVNVVDYLVHVAAFFAHESCGKCIPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 373

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 374 VTRLSACGLGQSVANPMKSALALF 397


>gi|315917685|ref|ZP_07913925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691560|gb|EFS28395.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 594

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/409 (37%), Positives = 235/409 (57%), Gaps = 9/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTG 63
           + RI  N   +  +S+ D + +  +  + K L++     +I E++ SGLRGRGG GF TG
Sbjct: 114 ERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFPTG 173

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW    K       Y+V NADE +PG   DR I+  +P+ +IEG +IA +AIGA+ A I
Sbjct: 174 IKWEIASKQ-EGNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHALI 232

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180
           Y+R E+      LQ A+++    G LG +   +   +DVD+    GAGA++CGEETAL++
Sbjct: 233 YIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVDL--KFGAGAFVCGEETALIQ 290

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S++G++G+P+ KPP+PA  G  G PT VNNVE++  VP I++ G+ W+   G E + GTK
Sbjct: 291 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 350

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G VN    VE  M  T  E+I +  GGI+ G     AV  GG S  CL    +  
Sbjct: 351 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIKNG-KRFKAVQTGGPSGGCLTNKDLDI 409

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           +I D+D L   GS +G+  +I+MD    ++        F   ESCG+CTPCR G   +  
Sbjct: 410 SI-DFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 468

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ R+ +G     ++ LL E+S  I+  ++C LG  +  P+   +K FR
Sbjct: 469 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFR 517


>gi|300860588|ref|ZP_07106675.1| putative NADH-quinone oxidoreductase subunit 1 [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849627|gb|EFK77377.1| putative NADH-quinone oxidoreductase subunit 1 [Enterococcus
           faecalis TUSoD Ef11]
          Length = 432

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 219/384 (57%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G  +L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTP R GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPFRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|311108352|ref|YP_003981205.1| NAD-dependent formate dehydrogenase subunit beta [Achromobacter
           xylosoxidans A8]
 gi|310763041|gb|ADP18490.1| NAD-dependent formate dehydrogenase beta subunit [Achromobacter
           xylosoxidans A8]
          Length = 523

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 153/410 (37%), Positives = 233/410 (56%), Gaps = 6/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    SL D  + G    + + L      I++E+ ASGLRGRGGA F
Sbjct: 101 LKQQERLTFARVGVTDPLSLQDYAAHGGLQGLQRALTMEPGQIVDEMVASGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +     D+  Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWKTVAGTPGDQ-KYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+ +  ++L+AA+    + G LG +    G   D+ V  GAGAYICGEET+LL
Sbjct: 220 GYIYVRSEYPQAIDTLEAAIARARSVGWLGDDVHGSGRRFDLEVRKGAGAYICGEETSLL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +GA++Y  +G   + GT
Sbjct: 280 ESLEGKRGVVRAKPPLPAISGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE++  ++  +L+    GG   G   L AV  GG     LP  Q  
Sbjct: 340 LPFQLAGNLKHGGLVEKAFGLSLRDLLYGFGGGSASG-RPLRAVQVGGPLGAYLPESQWD 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + +G   ++  D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 399 -VPLDYEAYIQISAMVGHGGLVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457

Query: 360 RVMERLVK-GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             ++++V  G  +++++ LL ++   + G ++CALG  A +P+   + +F
Sbjct: 458 ETIDKIVAGGPGREQQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHF 507


>gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 153/401 (38%), Positives = 232/401 (57%), Gaps = 7/401 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           ++ + + R  +  + K+L+   RD +INE+K SGLRGRGG GF TGMKW F  K   D+ 
Sbjct: 130 NIDEYIGRDGYQGLAKVLQDLSRDDVINEMKTSGLRGRGGGGFPTGMKWEFCKKSPGDK- 188

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            +++ NADE +PG   DR ++  +PH ++EG  I ++A+GA   +IY R E+    + L 
Sbjct: 189 KFVICNADEGDPGAFMDRSLLEGDPHAILEGMAIGAYAMGADEGYIYCRAEYPLAIKRLH 248

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A+ +    GLLG N  +G D    +H   GAGA++CGEETAL+ S+EG++G PR +PPF
Sbjct: 249 QAIAQAEEYGLLGKNI-MGTDFSFEIHVKEGAGAFVCGEETALMASIEGQRGMPRPRPPF 307

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PAN GL+  P+ +NNVE+ A V  I+  G +WY+  G E ++GTK+F+++G V     VE
Sbjct: 308 PANKGLWEKPSNINNVETWANVAQIILHGGAWYASVGTEKSKGTKVFALTGKVKNTGLVE 367

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  E++ +  GGI        AV  GG S  CL    +   I  Y+ L   G+ +
Sbjct: 368 VPMGTTIREVVFEIGGGILND-KKFKAVQIGGPSGGCLTEEHLDLPI-SYESLTAAGAIM 425

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  ++V+D  T ++        F + ESCG+C PCREGT  M+ ++ R+ +G  Q+ +I
Sbjct: 426 GSGGLVVVDEDTCMVDVAKFFLEFTQAESCGKCVPCREGTKKMLDILTRITEGKGQEGDI 485

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + L  +   I+  ++C LG  A  P+   I+ FR   E  I
Sbjct: 486 EKLQYLGTQIKDASLCGLGQTAPNPVLTTIRYFRHEYEAHI 526


>gi|300853892|ref|YP_003778876.1| NADH dehydrogenase I subunit F [Clostridium ljungdahlii DSM 13528]
 gi|300434007|gb|ADK13774.1| NADH dehydrogenase I, F subunit [Clostridium ljungdahlii DSM 13528]
          Length = 599

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/408 (37%), Positives = 224/408 (54%), Gaps = 9/408 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           SL D + RG +  + K +   + + ++ E+  SGLRGRGGAGF TG KW     +    P
Sbjct: 131 SLEDYVERGGYKALKKAISSMKPEDVLEEITKSGLRGRGGAGFPTGRKWKTAADI-DTSP 189

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V N DE +PG   DR IM  +P+++IEG  + ++A+G    F Y+R E+    E++Q
Sbjct: 190 IYVVCNGDEGDPGAFMDRSIMEGDPNSVIEGMTLCAYAVGGTNGFAYIRDEYGLAVENMQ 249

Query: 138 AAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A+++     LLG+N  LG D   DI +  G GA++CGE TAL+ S+EG  G+PR K   
Sbjct: 250 KAINKAKDENLLGNNI-LGTDFSFDIQIVRGGGAFVCGESTALMSSIEGMVGEPRAKYIH 308

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTV 254
               GL+G PT +NNVE+ A VP I+ +G  WY   G  E ++GTK+FS+ G V     V
Sbjct: 309 TTEKGLWGQPTVLNNVETWANVPIIIEKGGDWYHAIGTMEKSKGTKVFSLVGKVKNTGLV 368

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T  E+I    GG+        AV  GG S  CLPA  +   + DYD L +  S 
Sbjct: 369 EVPMGTTLREIIYDIGGGVLNDR-KFKAVQIGGPSGGCLPAEYLDLPV-DYDTLVKADSM 426

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  +IVMD  T ++        F   ESCG+C PCREG   M+ ++  +  G  ++ +
Sbjct: 427 MGSGGMIVMDDRTCMVDVTRYYLSFLAEESCGKCVPCREGVKRMLEILTDICNGDGKEGD 486

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           I+ L E+       ++C+LG +A  P+   I+ FR   EE I +  RC
Sbjct: 487 IEELLEICSMTSKASLCSLGKSAPNPVIASIRYFRDEFEEHI-KNKRC 533


>gi|326562844|gb|EGE13132.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis
           103P14B1]
          Length = 359

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/348 (41%), Positives = 210/348 (60%), Gaps = 11/348 (3%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE++   + LQ 
Sbjct: 5   YLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAKRLQN 64

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A++EC A+ LLG +  LG  ++  + VH GAG YICGEETAL+  LEG++  PR KPPFP
Sbjct: 65  AINECVANHLLG-DGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFP 123

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPC 252
              G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +SG V    
Sbjct: 124 QVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVKDAG 183

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-QMRGAIMDYDGLKEM 311
             E     T  ELIE   GG++ G  +L A +PGG+S   L A  +    +MD+D + + 
Sbjct: 184 LWELPFGHTARELIEL-AGGMQEGL-SLKAWLPGGASTDFLTASDEHLDLVMDFDPIMKA 241

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++ +  G AQ
Sbjct: 242 GSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNGQAQ 301

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +ID L E+++++  G+T CA    A  P+   +K FR   E++++ 
Sbjct: 302 ADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNN 349


>gi|227499381|ref|ZP_03929492.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
 gi|227218585|gb|EEI83825.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
          Length = 526

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 224/392 (57%), Gaps = 10/392 (2%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPGTCK 93
           I E  +  II+ VK SGLRGRGGAGF  G KW    +   D P  Y++ NADE +PG   
Sbjct: 76  IYELDQREIIDIVKDSGLRGRGGAGFPVGRKWEAAYR--EDSPIKYIICNADEGDPGAFM 133

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN- 152
           DR ++  +PH+++E   I +FAIGA+  FIYVR E+ +  ++L+ A+ +  A  LLG N 
Sbjct: 134 DRSVLELDPHSVLEAMAIGAFAIGANKGFIYVRAEYPKAVKALEKAIKDAKAYNLLGENI 193

Query: 153 --SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
             S   +D+++    GAGA++CGE TAL+ES+EGK+G PR K       GL+G PT +NN
Sbjct: 194 LDSDFSFDIEL--RLGAGAFVCGEGTALMESIEGKRGMPRNKEYRTTVKGLWGKPTVINN 251

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270
           VES+A +  I+ +G +W+  FG E + GTK+F++SG V     VE +M  + + ++    
Sbjct: 252 VESLANIGQIINKGPAWFRTFGTEKSPGTKVFALSGKVKRAGLVEVAMGTSINTIVYDIG 311

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
            GI+   +   AV  GG S  C+P  ++     D++ LK +GS +G+  ++VMD    ++
Sbjct: 312 KGIQADKE-AKAVQTGGPSGGCIPK-RLFDTACDFESLKAIGSIMGSGGMVVMDEDDCMV 369

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
                   F   ESCG+CTPCR G   +  +++ L KG A +  +D L E++  +   ++
Sbjct: 370 DVARFFLEFSVDESCGKCTPCRIGNKRLFEMLDDLTKGKADQESLDKLDELAHIVAETSL 429

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           C LG ++  PI   +K F    E  I +   C
Sbjct: 430 CGLGKSSPNPIISTMKYFYDEYEAHIGKTKTC 461


>gi|317125324|ref|YP_004099436.1| formate dehydrogenase subunit beta [Intrasporangium calvum DSM
           43043]
 gi|315589412|gb|ADU48709.1| formate dehydrogenase beta subunit [Intrasporangium calvum DSM
           43043]
          Length = 509

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 156/417 (37%), Positives = 233/417 (55%), Gaps = 7/417 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +    ++     G W  + + L      ++ E+ ASGLRGRGGAGF
Sbjct: 95  LARQHRVSFARVGVIAPTDIAAYEEHGGWAGLRRALVMEPAEVVEELAASGLRGRGGAGF 154

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  +D   ++  N DE + GT  DR +   +P TLIEG ++A+ A+GA  
Sbjct: 155 PTGIKWRTVLQTSADL-KFVCCNLDEGDSGTFADRMLAEGDPFTLIEGMLVAAHAVGARE 213

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178
            +IY R E+     +L+ A+D  YA G LG   + G D+  D+ V  GAGAYICGEET++
Sbjct: 214 GYIYCRSEYPAAAATLRRAIDVAYAHGWLGDRIQ-GSDLSFDLFVRLGAGAYICGEETSM 272

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG++G+ R KPP PA  GL+G PT VNNV + A VP IL  G + Y+  G   +RG
Sbjct: 273 LESLEGRRGEVRAKPPIPAIEGLFGRPTVVNNVLTFAAVPMILADGGAAYAALGSGRSRG 332

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T++F ++G+V     VE    I+  +L+E + GG   G   + AV  GG     LPA  +
Sbjct: 333 TQVFQLAGNVRQGGIVETDFGISLRDLVEDYGGGTVTG-RPVRAVQVGGPLGAYLPATDL 391

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDY+ L E+G  LG   V+V D + D  +       F   ESCG+CTPCR G+   
Sbjct: 392 D-VPMDYEALLEVGGMLGHGGVVVWDDTFDAARMARFAMEFCAKESCGKCTPCRIGSQRG 450

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           +  ++R++ G  ++R + LL ++   +   ++CA+G     P+Q  I++F    + R
Sbjct: 451 VETIDRIIAGTERERNLLLLDDLCTTMTKGSLCAMGGLTPMPVQSAIRHFAEDFDRR 507


>gi|332558532|ref|ZP_08412854.1| NADH dehydrogenase [Rhodobacter sphaeroides WS8N]
 gi|332276244|gb|EGJ21559.1| NADH dehydrogenase [Rhodobacter sphaeroides WS8N]
          Length = 416

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 154/409 (37%), Positives = 222/409 (54%), Gaps = 15/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---D 75
           +L++  + G ++ V++        II+ V+A+ L GRGGAGF  G KW FMP+  +   D
Sbjct: 18  TLAEWRAEGGYEAVERARNMAPGEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGTSPGD 77

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YL+VN DE EPG  KDR ++   PH +IEG +I + A  A  A + +R E+     +
Sbjct: 78  GPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRPGIAA 137

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           ++ A+ E   +GLLG       D+ I VH  AG YI GEETAL+ +LEG +  PR +PPF
Sbjct: 138 VEHAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRKRPPF 190

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PTTVNNVE+I++VP IL  G   +    R    GTKL+ +SG V  P   E
Sbjct: 191 PAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRPGLFE 250

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  ELIE+  GG+ G    L A  PGG +       ++    +D+  + + GS  
Sbjct: 251 APMGTTARELIER-AGGVSGD-GQLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKAGSMF 307

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  +IV+D S   +  + R   FY  ESCG CTPCREG   + ++++R   G  ++ ++
Sbjct: 308 GTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGRRADL 367

Query: 376 DLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +LL   +      GR+ C L   A  P+   +  F    E R+ +  R 
Sbjct: 368 ELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGERA 416


>gi|217978887|ref|YP_002363034.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylocella silvestris BL2]
 gi|217504263|gb|ACK51672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylocella silvestris BL2]
          Length = 603

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/394 (37%), Positives = 217/394 (55%), Gaps = 20/394 (5%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G  D +   L++  + +I E+  S LRGRGGAGF TGMKW    K   +   Y++ NADE
Sbjct: 195 GRADGIKAALDQSPEQVIEEISNSKLRGRGGAGFPTGMKWRLTRKAVGEN-RYVICNADE 253

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EPGT KDR ++   P  + +G  IA +A+GA    +Y+RGE+    + LQ  + +  A 
Sbjct: 254 GEPGTFKDRLLLTEFPDLVFDGMTIAGYALGARRGVVYLRGEYAYLWDPLQEVLRDRRAL 313

Query: 147 GLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           GLLG++   + G+D DI +  GAGAY+CGEE+ALLES+EGK+G PR +PPFP   G    
Sbjct: 314 GLLGADICGRSGFDFDIRIQLGAGAYMCGEESALLESMEGKRGAPRDRPPFPTERGYLRQ 373

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT ++NVE+ A    I+ +GA+W++GFG + + GTKL S+SG    P   E    IT +E
Sbjct: 374 PTAIDNVETFACAARIVEKGAAWFTGFGTKESTGTKLMSVSGDCQRPGVYEVPFGITVNE 433

Query: 265 LIEKHCGGIRGGWDNLLAVI--PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
           L++     + G  D     I  P G SV    A +  G  + Y+ L   GS       ++
Sbjct: 434 LLD-----LVGAPDAEYVQISGPSGQSV----APKDFGRRIAYEDLSTGGS------TMI 478

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
              + D++  + + + F+ HESCG C PCR G   + + ME++V G A   +I     ++
Sbjct: 479 FGPNRDVLDIVLQFADFFVHESCGWCAPCRVGAPLLKQGMEKIVAGRATLADIAATEALA 538

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +   + C LG  A  PI   + +F  L E R+
Sbjct: 539 NTVMRMSRCGLGQTAPNPILTTMLSFPELYEARL 572


>gi|126701029|ref|YP_001089926.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile 630]
 gi|254977028|ref|ZP_05273500.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-66c26]
 gi|255094355|ref|ZP_05323833.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile CIP 107932]
 gi|255102609|ref|ZP_05331586.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-63q42]
 gi|255308435|ref|ZP_05352606.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile ATCC 43255]
 gi|255316108|ref|ZP_05357691.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-76w55]
 gi|255518769|ref|ZP_05386445.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-97b34]
 gi|255651947|ref|ZP_05398849.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-37x79]
 gi|255657359|ref|ZP_05402768.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-23m63]
 gi|260684911|ref|YP_003216196.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260688569|ref|YP_003219703.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|296451827|ref|ZP_06893546.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
 gi|296879777|ref|ZP_06903751.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
 gi|306521696|ref|ZP_07408043.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile QCD-32g58]
 gi|115252466|emb|CAJ70309.1| putative iron-only hydrogenase,electron-transferring subunit
           HymB-like [Clostridium difficile]
 gi|260211074|emb|CBA66445.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260214586|emb|CBE07152.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|296259306|gb|EFH06182.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
 gi|296429248|gb|EFH15121.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
          Length = 628

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 220/371 (59%), Gaps = 7/371 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKW---SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +I EVK SGLRGRGGAGF TG KW   S  P   +D+  ++V NADE +PG   DR ++ 
Sbjct: 184 VIAEVKTSGLRGRGGAGFPTGSKWEAASKNPAGPTDK-KFVVCNADEGDPGAFMDRSVLE 242

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYD 158
            +PH+++E   I  +AIG+   +IY+R E+ +  E L+ A+ +    GLLG N    G++
Sbjct: 243 GDPHSVLEAMAICGYAIGSDTGYIYIRAEYPKSIERLKVAIAQAEKYGLLGENILGTGFN 302

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             + + +GAGA++CGE TAL+ S+EG++G+PR+K    +  GL+  PT +NNVE+ A +P
Sbjct: 303 FKLELKYGAGAFVCGEGTALMHSIEGRRGEPRMKTYSSSKSGLWKSPTCLNNVETFANIP 362

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I+ +G  W++  G E++ GTK+F++ G V     VE  M  T  +++ +  GGI  G  
Sbjct: 363 AIILKGGDWFANLGTEDSSGTKVFALGGKVENVGLVEVPMGTTLRDIVFEIGGGIPEG-K 421

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S  C+P   +   I D+  L  +GS +G+  ++V+D S  ++        
Sbjct: 422 KFKAVQTGGPSGGCIPTEHLDTPI-DFGSLSSIGSMMGSGGMLVLDESDCMVDIAKFFLE 480

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F   ESCG+CTPCR GT  ++ ++ ++ +G    +++D L  +++ I+  ++C LG AA 
Sbjct: 481 FTVEESCGKCTPCRIGTTRLLEILTKITEGNGTLQDLDDLENLAETIQTASLCGLGKAAP 540

Query: 399 WPIQGLIKNFR 409
            P+   ++ F+
Sbjct: 541 NPVLSTLQYFK 551


>gi|256958880|ref|ZP_05563051.1| NADH dehydrogenase [Enterococcus faecalis DS5]
 gi|257078911|ref|ZP_05573272.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis JH1]
 gi|294779582|ref|ZP_06744976.1| HymB family protein [Enterococcus faecalis PC1.1]
 gi|307271121|ref|ZP_07552404.1| HymB family protein [Enterococcus faecalis TX4248]
 gi|256949376|gb|EEU66008.1| NADH dehydrogenase [Enterococcus faecalis DS5]
 gi|256986941|gb|EEU74243.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis JH1]
 gi|294453372|gb|EFG21780.1| HymB family protein [Enterococcus faecalis PC1.1]
 gi|306512619|gb|EFM81268.1| HymB family protein [Enterococcus faecalis TX4248]
 gi|315033792|gb|EFT45724.1| HymB family protein [Enterococcus faecalis TX0017]
 gi|315036877|gb|EFT48809.1| HymB family protein [Enterococcus faecalis TX0027]
 gi|323480624|gb|ADX80063.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Enterococcus
           faecalis 62]
 gi|329571419|gb|EGG53106.1| putative protein HymB [Enterococcus faecalis TX1467]
          Length = 432

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSGEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +   +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLTDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRKEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A P++  +  F
Sbjct: 389 VTRLSACGLGQSVANPMKSALALF 412


>gi|315170079|gb|EFU14096.1| HymB family protein [Enterococcus faecalis TX1342]
          Length = 432

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 6/384 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPIILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATGRP-LKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRKEATASDLPRLEKMLTH 388

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           +   + C LG + A  ++  +  F
Sbjct: 389 VTRLSACGLGQSVATSMKSALTLF 412


>gi|94265734|ref|ZP_01289471.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
 gi|93453747|gb|EAT04123.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
          Length = 562

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/386 (36%), Positives = 228/386 (59%), Gaps = 5/386 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNA 84
           G+   +D I  +    II+E+  SGLRGRGG G+  G+KW+ + K         Y++ NA
Sbjct: 168 GYQALLDCIWHRQPAAIIDEISKSGLRGRGGGGYPAGLKWATVAKAALPPGGRKYVICNA 227

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DE +PG   DR ++   PH ++EG  IA++A+GA   ++YVR E+      L+ A+ +  
Sbjct: 228 DEGDPGAFMDRSVLESAPHRVLEGMAIAAYAVGADFGYLYVRAEYPLAVARLKKAISQAE 287

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
             GLLG       +D  + +  GAGA++CGEETAL+ S+EGK+GQPR +PP+PA  G+ G
Sbjct: 288 KLGLLGQRIGGSAFDFRVEIRLGAGAFVCGEETALVASIEGKRGQPRPRPPYPAEYGIKG 347

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
           CPT +NNVE++A +  I+ RG +W++  G E ++GTK+F+++G V     +E  M IT  
Sbjct: 348 CPTLINNVETLANITAIINRGGAWFATLGSEQSKGTKVFALAGKVVNTGLIEVPMGITLH 407

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E++E+  GG   G  ++ AV  GG S  C+PA   +  + DY+ L+  GS +G+  +I+M
Sbjct: 408 EIVEEMGGGTPAGG-SIKAVQTGGPSGGCIPAAHFQLPV-DYESLQAEGSIMGSGGLIIM 465

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
           D  + ++        F   ESCG+C PCR GT  ++ ++E++  G   + ++  L E+  
Sbjct: 466 DEGSGMVDVARFFMEFCVDESCGKCVPCRVGTKQILLLLEKIGAGAGGQDDLARLQELCA 525

Query: 384 NIEGRTICALGDAAAWPIQGLIKNFR 409
            ++  ++C LG +A  P+   +K FR
Sbjct: 526 MVQQGSLCGLGMSAPNPVLSTLKFFR 551


>gi|302344257|ref|YP_003808786.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301640870|gb|ADK86192.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 638

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/415 (38%), Positives = 237/415 (57%), Gaps = 7/415 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q+R+   N+  +    ++D+++ G +  + K L E     II EVK+SGLRGRGG GF T
Sbjct: 148 QERVVLRNIGHIDPTDITDAIAAGGYQGLAKALGEMTPAEIIEEVKSSGLRGRGGGGFPT 207

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW    K     P Y++ NADE +PG   DR I+  +P +++EG  IA++A+GA   F
Sbjct: 208 GLKWQSCAKA-EGEPKYVICNADEGDPGAYMDRSILEGDPFSVLEGMTIAAYAVGARHGF 266

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           +YVR E+      L  A+ +    GLLG N   LG+D DI +  GAGA++CGE TAL+ S
Sbjct: 267 VYVRNEYPLAVVRLVGAIKQAKQYGLLGENILGLGFDFDIKISTGAGAFVCGESTALMRS 326

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK G+PR K       G    P+ +NNVE+ A VP I++ GA W++  G   ++GTK+
Sbjct: 327 LEGKVGRPRAKYIHTVEHGYRDKPSNLNNVETFANVPMIIKNGAQWFASMGTATSKGTKV 386

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+ G+V     VE  M  +   ++    GG         AV  GG S  C+PA  M   
Sbjct: 387 FSLVGNVKNTGLVEVPMGASLRHIVYDVGGGTL--KKAFKAVQSGGPSGGCIPA-SMLDI 443

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ L E G+ +G+  +IVMD+ T ++        F + ESCGQCTPCREG   ++++
Sbjct: 444 PVDYEKLVETGAMMGSGGMIVMDQDTCMVDVARYFLEFLQEESCGQCTPCREGIKRLLQI 503

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +  + +G  ++ +I+LL E+S  ++  ++C LG +A  P+   I+ FR   E  I
Sbjct: 504 LTDICQGRGREGDIELLQELSATVKELSLCGLGGSAPNPVLSTIRYFRDEYESHI 558


>gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 596

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/377 (41%), Positives = 228/377 (60%), Gaps = 4/377 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I EVK SGLRGRGG GF TG+KW F      + P Y+V NADE +PG   DR I+  +P
Sbjct: 154 VIEEVKKSGLRGRGGGGFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSILEGDP 212

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H++IE   IA +AIGA+  +IYVR E+    + L+ A+++    GLLG +    G+D DI
Sbjct: 213 HSVIEAMAIAGYAIGANYGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDI 272

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETALL S+ G++G+PR +PPFPA  G++  PT +NNVE+ A +P I+
Sbjct: 273 EIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWSKPTIINNVETFANIPPII 332

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA W+S  G E ++GTK+F+++G VN    +E  M  T  E+I +  GGI  G     
Sbjct: 333 LNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNG-KKFK 391

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A   GG S  C+PA  +   I DYD L  +GS +G+  ++VMD  T ++        F  
Sbjct: 392 AAQTGGPSGGCIPAEHLDTPI-DYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTV 450

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  M+ ++E++  G  ++ +I+ L E++K I+   +C LG  A  P+
Sbjct: 451 DESCGKCAPCRIGTKRMLELLEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPV 510

Query: 402 QGLIKNFRPLIEERIDQ 418
              I+ FR   E  I +
Sbjct: 511 LSTIRYFRDEYEAHIKE 527


>gi|297203644|ref|ZP_06921041.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC
           29083]
 gi|197717222|gb|EDY61256.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC
           29083]
          Length = 533

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 223/410 (54%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    S  D  + G    +   LE     ++ EV ASGLRGRGGAGF
Sbjct: 105 LARQNRVTFARVGVTDPLSAEDYEAHGGLAGLRAALELAPADVVAEVTASGLRGRGGAGF 164

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +   C+D   ++  NADE + GT  DR +M  +P  LIEG  IA+ A+GA  
Sbjct: 165 PAGIKWKTVLD-CADELKFVCCNADEGDSGTFADRMVMEGDPFMLIEGMTIAAHAVGASE 223

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            ++Y+R E+     +++ A+      G LG    LG   D D+ V  GAGAYICGEET++
Sbjct: 224 GYLYIRSEYPDAVATMRRAIGVAREHGWLG-KGILGSALDFDLHVRVGAGAYICGEETSM 282

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT VNNV ++A VP ++ +GA  Y   G E +RG
Sbjct: 283 LESLEGKRGMVRAKPPIPAIEGLFGRPTVVNNVLTLATVPVVMAKGAQAYERLGVERSRG 342

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T++F + G++ +   VE +  IT  ELIE++ GG   G     A + GG     LP   M
Sbjct: 343 TQVFQLGGNIAHGGIVETAFGITLRELIEEYGGGTHSGRPVRTAQV-GGPLGAYLPE-SM 400

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDY+     G+ +G   V+V D S D+         F   ESCG+CTPCR G    
Sbjct: 401 FDLPMDYEAFAAAGAMVGHGGVVVFDDSVDMAAQARFAMEFCAEESCGKCTPCRVGAVRG 460

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + V++R+V G  +   + LL ++   +   ++CA+G     P++  + +F
Sbjct: 461 VEVIDRIVAGTHRDENLALLEDLCDLMTEGSLCAMGGLTPLPVRSALTHF 510


>gi|227823604|ref|YP_002827577.1| NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium
           fredii NGR234]
 gi|227342606|gb|ACP26824.1| NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium
           fredii NGR234]
          Length = 518

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 227/411 (55%), Gaps = 7/411 (1%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+     G+    SL D    G    ++K +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKNQTRLTFARCGVTDPLSLDDYRGHGGLRGLEKAVSMAPAAIVAEVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +    +  Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVLEAQGAQ-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177
             ++Y R E+     ++ AA++   A+G+LG+ S LG  +  D+ V  GAGAY+CGEET+
Sbjct: 217 KGYVYTRSEYPHAIAAMSAAIEIARAAGVLGT-SVLGSAHAFDMEVRTGAGAYVCGEETS 275

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +R
Sbjct: 276 LLNSLEGKRGLVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMDKGAAYYRDFGMGRSR 335

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT    I+G+V +    E +  +T  E+++K  GG   G   + AV  GG      P   
Sbjct: 336 GTIPIQIAGNVKHGGLYETAFGLTLGEIVDKIGGGTASGRP-VKAVQVGGPLGAYFPR-S 393

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +     DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+  
Sbjct: 394 LFDTPFDYEAFAAKDGLIGHAGLVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTR 453

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            + V +R+  GI  ++  +LL ++   ++  ++CALG    +P+   + +F
Sbjct: 454 GVEVADRIAAGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVTSAMTHF 504


>gi|118472465|ref|YP_884576.1| formate dehydrogenase subunit beta [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173752|gb|ABK74648.1| formate dehydrogenase, beta subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 532

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 225/409 (55%), Gaps = 5/409 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  QDR+ F  +      S  D +  G    + + L+     ++ EV  SGLRGRGGAGF
Sbjct: 101 MATQDRVTFARVGVTDPVSPDDYLDHGGLAGLRRALQMSPAEVVAEVTDSGLRGRGGAGF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +   C+D   ++  NADE + GT  DR +M  +P  LIEG  IA+ A+GA  
Sbjct: 161 PAGIKWKTVLD-CADALKFVCCNADEGDSGTFADRMVMEGDPFMLIEGMTIAAHAVGATE 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+     +++AA+D     G LG +    G   D+ V  G GAYICGEET++L
Sbjct: 220 GYIYIRSEYPDAIATMRAAIDIARGRGWLGDDVLGSGLRFDMHVRVGGGAYICGEETSML 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV +++ VP +L  GA  Y+ FG   +RGT
Sbjct: 280 ESLEGKRGMVRAKPPIPAINGLFGKPTVVNNVLTLSSVPLVLAEGAQAYADFGVGRSRGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           ++F + G++     VE +  IT  EL+E + GG   G   + AV  GG     LP+ +  
Sbjct: 340 QIFQLGGNIRRGGIVERAFGITLGELVEHYGGGTLSGR-PVRAVQVGGPLGAYLPSDRFD 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+   E G+ +G   ++V D + D+         F   ESCG+CTPCR G+   M
Sbjct: 399 -LPMDYEAFAEAGAMVGHGGIVVFDETVDMAAQARFAMEFCAAESCGKCTPCRVGSVRGM 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++R+  G  ++  + LL ++   +   ++CA+G     P++  + +F
Sbjct: 458 EVIDRITAGDHREENLALLDDLCDVMTEGSLCAMGGLTPMPVRSALTHF 506


>gi|154247408|ref|YP_001418366.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2]
 gi|154161493|gb|ABS68709.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2]
          Length = 520

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/411 (36%), Positives = 227/411 (55%), Gaps = 9/411 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +   SL+D  + G +  +++ +  G    + EV  SGLRGRGGAGF
Sbjct: 100 LKKQTRLTFARIGIIDPLSLTDYKAHGGYRGLERAITLGPSATVEEVVESGLRGRGGAGF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D+  Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 160 PTGIKWRTVAAAPADQ-RYIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGATK 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177
            ++Y R E+      ++ A+++   +GLLG N   S L +D+++    GAGAY+CGEETA
Sbjct: 219 GYVYSRSEYPLAFVVMEKAIEKAREAGLLGDNILGSGLSFDMEM--RMGAGAYVCGEETA 276

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGK+G  R KPP PA+ GL+  PT +NN+ S+A VP IL +G  +Y  FG   +R
Sbjct: 277 LLESLEGKRGLVRAKPPLPAHKGLFQKPTVINNLVSLATVPVILDKGGKYYRDFGMGRSR 336

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT    I+G++ +    E +  I   EL+    GG   G   + AV  GG     LP  Q
Sbjct: 337 GTMPIQIAGNIKFGGLFETAFGIPLGELVYDIGGGTASGRP-VKAVQAGGPLGAYLPTHQ 395

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                 DY+      + +G   ++V D + D+         F  HESCG+CTPCR G+  
Sbjct: 396 FD-TPFDYEAFAAKDALIGHGGLVVFDDTADLADMAKFAMEFCAHESCGKCTPCRIGSTR 454

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            +  +++++ G  +++ + LL ++   ++  ++CALG    +P+   + +F
Sbjct: 455 GVETIDKVIAGEKREQNLALLTDLCHTMKLGSLCALGGFTPYPVLSALNHF 505


>gi|257066578|ref|YP_003152834.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
 gi|256798458|gb|ACV29113.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
          Length = 526

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 222/390 (56%), Gaps = 6/390 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           I E  R  II+ VK SGLRGRGGAGF TG KW       +D   Y++ NADE +PG   D
Sbjct: 76  IFELDRKEIIDIVKDSGLRGRGGAGFPTGRKWEAAFLQDTD-IKYIICNADEGDPGAFMD 134

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
           R ++  +PH+++E   I + AIG++  FIYVR E+ +   +L+ A+D+     LLG N  
Sbjct: 135 RSVLELDPHSVLEAMAICARAIGSNKGFIYVRAEYPKAVRALEIAIDQAKKYNLLGDNI- 193

Query: 155 LGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
           LG D   DI +  GAGA++CGE TAL+ES+EG++G PR K       GL+G PT +NNVE
Sbjct: 194 LGSDFSFDIELRLGAGAFVCGEGTALMESIEGRRGMPRNKEYRTTVRGLWGKPTVINNVE 253

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           + A +  I+ +G++W+  FG E + GTK+F++SG V     VE  M  + D+++     G
Sbjct: 254 TFANIAQIINKGSAWFRSFGTEKSPGTKVFALSGKVKNAGLVEVEMGTSIDQIVYDIGKG 313

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           I+   D   AV  GG S  C+P  ++     D++ L  +GS +G+  ++VMD    ++  
Sbjct: 314 IQNDKD-AKAVQTGGPSGGCIPK-RLFDTACDFESLGAIGSIMGSGGMVVMDEDDCMVDV 371

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
                 F   ESCG+CTPCR G   +  +++ + KG A    +D L E+S+ +   ++C 
Sbjct: 372 ARFFLEFSVDESCGKCTPCRIGNKRLFEMLDDITKGKANHETLDKLEELSEIVSEASLCG 431

Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           LG ++  PI   ++ F    E  +++   C
Sbjct: 432 LGKSSPNPIISTMRYFYDEYEAHVNENKTC 461


>gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 596

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 159/405 (39%), Positives = 241/405 (59%), Gaps = 9/405 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + ++++ G ++ + K+L     + +I+E+K SGLRGRGG GF TG+KW F  K   + 
Sbjct: 128 EDIEEAIAMGAYEALGKVLTTMTPEQVIDEMKKSGLRGRGGGGFPTGLKWEFAYKQ-KET 186

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P Y+V NADE +PG   DR IM  +PH+++EG  IA +AIGA+   IYVR E+    + L
Sbjct: 187 PKYVVCNADEGDPGAFMDRSIMEGDPHSVLEGMAIAGYAIGANHGVIYVRAEYPLAVKRL 246

Query: 137 QAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           Q A+ +    GLLG N   +   +DV+I    GAGA++CGEETALL S+ G++G+PR +P
Sbjct: 247 QIAIKQAREYGLLGDNIFGTDFSFDVEI--RFGAGAFVCGEETALLNSVMGRRGEPRPRP 304

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P+PA  GL+  PT +NNVE+ A VP I+  GA W+S  G E ++GTK+F+++G VN    
Sbjct: 305 PYPAVKGLWNKPTIINNVETFANVPVIISNGAEWFSSIGTEKSKGTKVFALTGKVNRTGL 364

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +E  M  T  E+I    GGI  G     AV  GG S  C+P   +   ++DYD L  +G+
Sbjct: 365 IEVPMGTTLREIIFDIGGGIPDG-KRFKAVQIGGPSGGCIPEEHLD-TVIDYDSLISLGA 422

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +G+  ++VMD  T ++        F   ESCG+C PCR GT  M+ +++++  G  +  
Sbjct: 423 MMGSGGLVVMDEDTCMVNVAKFFLEFIVDESCGKCAPCRIGTKRMLEILDKITSGKGEPE 482

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +ID L +++  I+   +C LG  A   +   ++ FR   E  I+Q
Sbjct: 483 DIDRLEKLATTIKDTALCGLGQTAPNAVLSTLRYFRNEYEAHINQ 527


>gi|77463676|ref|YP_353180.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|77388094|gb|ABA79279.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Rhodobacter
           sphaeroides 2.4.1]
          Length = 416

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 222/409 (54%), Gaps = 15/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---D 75
           +L++  + G ++ VD+        II+ V+A+ L GRGGAGF  G KW FMP+  +   +
Sbjct: 18  TLAEWRAEGGYEAVDRARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGTSPGE 77

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YL+VN DE EPG  KDR ++   PH +IEG +I + A  A  A + +R E+     +
Sbjct: 78  GPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRPGIAA 137

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           ++ A+ E   +GLLG       D+ I VH  AG YI GEETAL+ +LEG +  PR +PPF
Sbjct: 138 VERAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRKRPPF 190

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PTTVNNVE+I++VP IL  G   +    R    GTKL+ +SG V  P   E
Sbjct: 191 PAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRPGLFE 250

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  ELIE+  GG+ G    L A  PGG +       ++    +D+  + + GS  
Sbjct: 251 APMGTTARELIER-AGGVSGD-GQLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKAGSMF 307

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  +IV+D +   +  + R   FY  ESCG CTPCREG   + ++++R   G  ++ ++
Sbjct: 308 GTGMLIVLDGTACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGRRADL 367

Query: 376 DLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +LL   +      GR+ C L   A  P+   +  F    E R+ +  R 
Sbjct: 368 ELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGERA 416


>gi|319779887|ref|YP_004139363.1| NADH dehydrogenase (quinone) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165775|gb|ADV09313.1| NADH dehydrogenase (quinone) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 518

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 150/393 (38%), Positives = 219/393 (55%), Gaps = 8/393 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL      G  + +   L      I+ EV  SGLRGRGGAGF TG+KW  +     DR  
Sbjct: 117 SLESYKKHGGLNGLMNALALTPAAIVAEVTESGLRGRGGAGFPTGIKWKTVLDTAGDR-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA   F+YVR E+     ++  
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMTIAGIATGATKGFVYVRSEYPHAVAAMNK 235

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           AV+    +G+LG++   S   +D++I V  GAGAY+CGEETALL+SLEGK+G  R KPP 
Sbjct: 236 AVEIARKAGVLGASVLGSPHAFDMEIRV--GAGAYVCGEETALLDSLEGKRGMVRAKPPL 293

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GL+G PT +NNV S+A VP I+ +GA++Y  FG   +RGT    I+G+V +    E
Sbjct: 294 PAHKGLFGKPTVINNVISLASVPVIMDKGAAFYKDFGMGRSRGTIPVQIAGNVKFAGLFE 353

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
            +  +T  E++++  GG   G   + AV  GG      P   +     DY+        +
Sbjct: 354 AAFGMTLGEIVDEIGGGTATGRP-VKAVQVGGPLGAYFPR-ALFDTPFDYEAFAAKDGLI 411

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G A ++V D + D++K       F   ESCG+CTPCR G+   +  +++L  GI  ++ +
Sbjct: 412 GHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSTRGVETIDKLAAGIEPEKNL 471

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            L+ ++   ++  ++CALG    +P+   I +F
Sbjct: 472 ALVTDLCNTMKFGSLCALGGFTPYPVMSSITHF 504


>gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 596

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 157/377 (41%), Positives = 229/377 (60%), Gaps = 4/377 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+EVK SGLRGRGG GF TG+KW F      + P Y+V NADE +PG   DR I+  +P
Sbjct: 154 VIDEVKKSGLRGRGGGGFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSILEGDP 212

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H+++E   IA +AIGA+  +IYVR E+    + L+ A+++    GLLG +    G+D DI
Sbjct: 213 HSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDI 272

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETALL S+ G++G+PR +PPFPA  G++  PT +NNVE+ A +P I+
Sbjct: 273 EIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPII 332

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA W+S  G E ++GTK+F+++G VN    +E  M  T  E+I +  GGI  G     
Sbjct: 333 LNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNG-KKFK 391

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A   GG S  C+PA  +   I DYD L  +GS +G+  ++VMD  T ++        F  
Sbjct: 392 AAQTGGPSGGCIPAEHLDTPI-DYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTV 450

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  M+ ++E++  G  ++ +I+ L E++K I+   +C LG  A  P+
Sbjct: 451 DESCGKCAPCRIGTKRMLELLEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPV 510

Query: 402 QGLIKNFRPLIEERIDQ 418
              I+ FR   E  I +
Sbjct: 511 LSTIRYFRDEYEAHIKE 527


>gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
 gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
          Length = 596

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 159/381 (41%), Positives = 231/381 (60%), Gaps = 5/381 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+EVK SGLRGRGG GF TG+KW F      + P Y+V NADE +PG   DR I+  +P
Sbjct: 154 VIDEVKKSGLRGRGGGGFPTGVKWEFAYNQ-KETPKYVVCNADEGDPGAFMDRSILEGDP 212

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H+++E   IA +AIGA+  +IYVR E+    + L+ A+++    GLLG +    G+D DI
Sbjct: 213 HSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDI 272

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETALL S+ G++G+PR +PPFPA  G++  PT +NNVE+ A +P I+
Sbjct: 273 EIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPII 332

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA W+S  G E ++GTK+F+++G VN    +E  M  T  E+I +  GGI  G     
Sbjct: 333 LNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNG-KKFK 391

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A   GG S  C+PA  +   I DYD L  +GS +G+  ++VMD  T ++        F  
Sbjct: 392 AAQTGGPSGGCIPAEHLDTPI-DYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTV 450

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  M+ V++++  G  ++ +I+ L E++K I+   +C LG  A  P+
Sbjct: 451 DESCGKCAPCRIGTRRMLEVLDKITSGKGEEGDIERLEELAKTIKATALCGLGQTAPNPV 510

Query: 402 QGLIKNFRPLIEERIDQYHRC 422
              I+ FR   E  I +  RC
Sbjct: 511 LSTIRYFRDEYEAHIKE-KRC 530


>gi|257452669|ref|ZP_05617968.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
          Length = 580

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 235/409 (57%), Gaps = 9/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTG 63
           + RI  N   +  +S+ D + +  +  + K L++     +I E++ SGLRGRGG GF TG
Sbjct: 100 ERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFPTG 159

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW    K       Y+V NADE +PG   DR I+  +P+ +IEG +IA +AIGA+ A I
Sbjct: 160 IKWEIASKQ-EGNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHALI 218

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180
           Y+R E+      LQ A+++    G LG +   +   +DV++    GAGA++CGEETAL++
Sbjct: 219 YIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVNL--KFGAGAFVCGEETALIQ 276

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S++G++G+P+ KPP+PA  G  G PT VNNVE++  VP I++ G+ W+   G E + GTK
Sbjct: 277 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 336

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G VN    VE  M  T  E+I +  GGI+ G     AV  GG S  CL    +  
Sbjct: 337 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIKNG-KRFKAVQTGGPSGGCLTNKDLDI 395

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           +I D+D L   GS +G+  +I+MD    ++        F   ESCG+CTPCR G   +  
Sbjct: 396 SI-DFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 454

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ R+ +G     ++ LL E+S  I+  ++C LG  +  P+   +K FR
Sbjct: 455 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFR 503


>gi|87120636|ref|ZP_01076530.1| formate dehydrogenase, beta subunit [Marinomonas sp. MED121]
 gi|86164279|gb|EAQ65550.1| formate dehydrogenase, beta subunit [Marinomonas sp. MED121]
          Length = 527

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 148/391 (37%), Positives = 218/391 (55%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL+D  S   +D + + L+     +++EVK SGLRGRGGA F TG+KW  +    + +  
Sbjct: 125 SLTDYKSTHGYDGLVRALDMSSQALVDEVKDSGLRGRGGAAFPTGIKWQTVLNTPAAQ-K 183

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ NADE + GT  DR  M  +P  LIEG  IA  A+ A   +IY+R E+   ++ L  
Sbjct: 184 YIICNADEGDSGTFADRLQMEADPFALIEGMTIAGLAVEATQGYIYLREEYPHAKDILNE 243

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G LG N    G    + V  GA AYICGEETAL+ESLEGK+G  R KPP PA
Sbjct: 244 AIQVAEQNGYLGENILDSGKTFHLEVRIGAKAYICGEETALMESLEGKRGMVRPKPPLPA 303

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNV S++ +  IL +G  +Y  FG   +RGT  F ++G++ YP  VE +
Sbjct: 304 IEGLFGQPTVVNNVLSLSTIAIILAKGGKFYQEFGMGRSRGTMPFQLAGNLKYPGLVETA 363

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  EL+    GG R G   + +V  GG     LP  Q     MDY+ L   G+ LG 
Sbjct: 364 FGITMKELLFDFGGGTRSGRP-MRSVQSGGPLGAYLPESQWH-LEMDYEALSAEGAVLGH 421

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++  D + D+++       F   ESCG+CTPCR G+   + V++R+     +   ++L
Sbjct: 422 GGLVAFDDTVDMLEQARFSLEFCVEESCGKCTPCRIGSTRGVEVIDRIRADENRDDNLEL 481

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++   +   ++CA+G    +P+Q  +++F
Sbjct: 482 LEDLCDTMVSGSLCAMGGMTPFPVQSALEHF 512


>gi|317059209|ref|ZP_07923694.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|313684885|gb|EFS21720.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
          Length = 594

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 235/409 (57%), Gaps = 9/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTG 63
           + RI  N   +  +S+ D + +  +  + K L++     +I E++ SGLRGRGG GF TG
Sbjct: 114 ERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFPTG 173

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW    K       Y+V NADE +PG   DR I+  +P+ +IEG +IA +AIGA+ A I
Sbjct: 174 IKWEIASKQ-EGNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHALI 232

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLE 180
           Y+R E+      LQ A+++    G LG +   +   +DV++    GAGA++CGEETAL++
Sbjct: 233 YIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVNL--KFGAGAFVCGEETALIQ 290

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S++G++G+P+ KPP+PA  G  G PT VNNVE++  VP I++ G+ W+   G E + GTK
Sbjct: 291 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 350

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G VN    VE  M  T  E+I +  GGI+ G     AV  GG S  CL    +  
Sbjct: 351 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIKNG-KRFKAVQTGGPSGGCLTNKDLDI 409

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           +I D+D L   GS +G+  +I+MD    ++        F   ESCG+CTPCR G   +  
Sbjct: 410 SI-DFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 468

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ R+ +G     ++ LL E+S  I+  ++C LG  +  P+   +K FR
Sbjct: 469 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFR 517


>gi|254469752|ref|ZP_05083157.1| Fe-hydrogenase, subunit beta [Pseudovibrio sp. JE062]
 gi|211961587|gb|EEA96782.1| Fe-hydrogenase, subunit beta [Pseudovibrio sp. JE062]
          Length = 518

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 154/397 (38%), Positives = 223/397 (56%), Gaps = 12/397 (3%)

Query: 20  LSDSMSRGHWD------NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           ++D +S  H++       + + L      I+ EV  SGLRGRGGAGF TG+KW+ + KV 
Sbjct: 112 ITDPLSLEHYEAHHGFLGLKRALAMTPAEIVQEVTDSGLRGRGGAGFPTGIKWNTVLKVQ 171

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D+  Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA   +IY R E+    
Sbjct: 172 GDQ-KYIVCNADEGDSGTFSDRMIMEGDPFVLIEGMAIAGIAVGATKGYIYTRSEYPHAI 230

Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
             L  A+     +G+LG  S +G  +  D+ V  GAGAY+CGEET+LL SLEGK+G  R 
Sbjct: 231 AILHDAIQIARKAGILGP-SVMGSEHAFDMEVREGAGAYVCGEETSLLNSLEGKRGIVRA 289

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPP PA  GL+G PT VNNV S+A VP I+ RGA +Y  +G   + GT    ++G++   
Sbjct: 290 KPPLPAIEGLFGKPTVVNNVMSLASVPIIMDRGARFYRDYGVGYSHGTIPIQLTGNIKNS 349

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E +  +T +ELI    GG   G   + AV  GG      P   +   I DY+   E 
Sbjct: 350 GLFETAFGLTLNELIYDIGGGTLSGRP-VKAVQVGGPLGAYFPP-SLFDTIFDYEAFVER 407

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
              +G A ++V D + D++K       F   ESCG+CTPCR G+   + V++R+ KG   
Sbjct: 408 NGMIGHAGIVVFDDTVDMLKQARFAMEFCAIESCGKCTPCRIGSVRGVEVLDRIAKGDQP 467

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +++I+LL ++   ++  ++CALG  A +P+   + +F
Sbjct: 468 EQQIELLTDLCDTMKMGSLCALGGFAPYPVMSSLTHF 504


>gi|126462508|ref|YP_001043622.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029]
 gi|126104172|gb|ABN76850.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029]
          Length = 416

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 222/409 (54%), Gaps = 15/409 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---D 75
           +L++  + G ++ V++        II+ V+A+ L GRGGAGF  G KW FMP+  +   +
Sbjct: 18  TLAEWRAEGGYEAVERARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGTSPGE 77

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YL+VN DE EPG  KDR ++   PH +IEG +I + A  A  A + +R E+     +
Sbjct: 78  GPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRPGIAA 137

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           ++ A+ E   +GLLG       D+ I VH  AG YI GEETAL+ +LEG +  PR +PPF
Sbjct: 138 VERAIHEARDAGLLG-------DLTIRVHPSAGRYIVGEETALITALEGHRAVPRKRPPF 190

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PTTVNNVE+I++VP IL  G   +    R    GTKL+ +SG V  P   E
Sbjct: 191 PAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRPGLFE 250

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  ELIE+  GG+ G    L A  PGG +       ++    +D+  + + GS  
Sbjct: 251 APMGTTARELIER-AGGVSGD-GQLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKAGSMF 307

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  +IV+D S   +  + R   FY  ESCG CTPCREG   + ++++R   G  ++ ++
Sbjct: 308 GTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGRRADL 367

Query: 376 DLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +LL   +      GR+ C L   A  P+   +  F    E R+ +  R 
Sbjct: 368 ELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGERA 416


>gi|94309499|ref|YP_582709.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Cupriavidus metallidurans CH34]
 gi|93353351|gb|ABF07440.1| NAD-dependent formate dehydrogenase beta subunit [Cupriavidus
           metallidurans CH34]
          Length = 518

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 156/410 (38%), Positives = 225/410 (54%), Gaps = 5/410 (1%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q+R+     G+    SL D ++   +  + + L      I+ EV  SGLRGRGGA 
Sbjct: 98  FLKKQERLTFMRVGITDPLSLDDYIAHEGFVGLTRALSMAPAEIVQEVVDSGLRGRGGAA 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    SD   Y+V NADE + GT  DR +M  +P  LIEG VIA  A+GA 
Sbjct: 158 FPTGIKWKTVLGARSDV-KYVVCNADEGDSGTFSDRMVMEDDPFMLIEGMVIAGLAVGAE 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+     + +AA++    +G LG + +  G    + V  GAGAY+CGEETAL
Sbjct: 217 QGYIYTRSEYPHAIAATEAAIEIATRAGWLGDDIRGSGRCFQLEVRKGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL RGA +Y  FG   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALEGLFGKPTVINNVISLATVPVILARGAKFYQDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE++  +T  EL+  + GG R G   + AV  GG     LP  + 
Sbjct: 337 TLPFQLAGNIRQGGLVEKAFGVTLRELMLDYGGGTRSGR-AIRAVQVGGPLGAYLPESRF 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              I DY+     G+ +G   ++V D + D+ K       F   ESCG+CTPCR G+   
Sbjct: 396 DTPI-DYEAYAAFGAVVGHGGIVVFDETVDMAKMARYAMEFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + VM+R++ G    + + L+ ++   +   ++CA+G    +P+   +  F
Sbjct: 455 VEVMDRIIAGDQPVKHVALVRDLCDTMVNGSLCAMGSMTPYPVLSALDEF 504


>gi|300087354|ref|YP_003757876.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527087|gb|ADJ25555.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 622

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 150/391 (38%), Positives = 233/391 (59%), Gaps = 5/391 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           LS  ++RG +  + + L     + +I E+ ASGLRGRGGAGF TG KW F  +     P 
Sbjct: 155 LSHYLARGGYAGLHRALTGLSPEQVIEEITASGLRGRGGAGFPTGRKWQFC-REAPGAPK 213

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ NADE +PG   DR I+  +PH+++EG +I+ +A+GA   ++YVR E+     +LQ 
Sbjct: 214 YVICNADEGDPGAFMDRSILEGDPHSVVEGLIISGYAVGASRGYVYVRAEYPLAVSTLQQ 273

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV +   +GLLG N    G+D D+ +  GAGA++CGEETAL+ SLEG++G PR +PP+PA
Sbjct: 274 AVAQARKAGLLGRNILGSGFDFDVEIKEGAGAFVCGEETALIASLEGRRGMPRPRPPYPA 333

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT +NNV+++A+   I+   A+ ++  G   +RGT +F+++G+V     VE  
Sbjct: 334 VSGLFGRPTNINNVKTLAMAAYIMAGHAADFAAMGTGQSRGTCVFALAGNVRRMGLVEVP 393

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M     E++    GGI      L AV  GG S  CLPA +     +DY+ L   G+ +G+
Sbjct: 394 MGTPLGEVVFDIGGGIPENR-QLKAVQIGGPSGGCLPA-EATDVGLDYESLSLSGAIMGS 451

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++VMD +T ++        F + ESCG+C PCR GT  M+ ++ER+  G  +  +I+ 
Sbjct: 452 GGMVVMDENTCMVDVARYFLTFVQAESCGKCVPCRLGTRQMLAILERITAGDGRPEDIET 511

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L  ++  I+  ++CALG  A  P+   ++ F
Sbjct: 512 LEGLAAQIKKTSLCALGGTAPNPVLTTLRYF 542


>gi|86748476|ref|YP_484972.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
 gi|86571504|gb|ABD06061.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
          Length = 428

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 149/360 (41%), Positives = 203/360 (56%), Gaps = 19/360 (5%)

Query: 60  FSTGMKWSFM--------PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           F T  KW FM        P  C     YL VN DE+EPG+ KDR +M   P  LIEG  I
Sbjct: 60  FPTANKWRFMRAGAEKAGPGAC-----YLCVNGDETEPGSFKDRLLMEALPQQLIEGATI 114

Query: 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAY 170
           A++A+GA    I VR E+     +L  A+ E   +GLLG +    G+D+ + VH  AG Y
Sbjct: 115 AAYAMGATEVIILVRDEYRAAAAALSRAIVEAEQTGLLGRDILGSGFDLTMRVHASAGRY 174

Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230
           I GEETAL+ +LEG++  PR +PP+PA  GL+G PTTVNNVE+++ VP+I+  GA WY G
Sbjct: 175 IVGEETALIAALEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSAVPSIVEHGAEWYQG 234

Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
               N  GTKL+ +SG V  P  +E  M  T  EL +  CGGIR G   L A  PGG + 
Sbjct: 235 LSHTNEGGTKLYGVSGCVARPQLIEAPMGTTARELFDL-CGGIRQG-RALFAFQPGGGAT 292

Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
             L   ++    +D+   K  GS LGT A+IV+D     + AI R   FY  ESCG CTP
Sbjct: 293 AFLETAEL-DVPLDFAHTKRAGSSLGTGALIVLDDHACPVAAIGRHMRFYARESCGLCTP 351

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYE--VSKNIEGRTICALGDAAAWPIQGLIKNF 408
           CR+G  W+ ++++ +  G   + +IDLL++        GR+ C L   A  P++  ++ F
Sbjct: 352 CRDGLPWVAKLLDTIEAGKGTRGDIDLLHQHVALSGPSGRSYCDLNTGALTPLRSGLERF 411


>gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 635

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 151/384 (39%), Positives = 226/384 (58%), Gaps = 6/384 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G+    D +L K  + +I+ +K SGLRGRGG GF TG+KW F  K  +D   Y+V NADE
Sbjct: 177 GYMALADSLLHKKPEEVIDVIKRSGLRGRGGGGFPTGLKWEFANKQKADM-KYVVCNADE 235

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR IM  +PH+++E   +  ++IG+    +Y+R E+    + L+ A+ +    
Sbjct: 236 GDPGAFMDRSIMEGDPHSIVEAMAVCGYSIGSPKGLVYIRAEYPLAIQRLKIAIAQAREY 295

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           GLLG N     +  DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G P
Sbjct: 296 GLLGKNIFGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAEAGYLGKP 355

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T VNNVE++A +P IL +GA W+S  G E ++GTK+F+++G +N    +E  M  T  E+
Sbjct: 356 TNVNNVETLANIPIILTKGAEWFSSIGTERSKGTKVFALAGKINNVGLIEVPMGTTLREV 415

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVMD 
Sbjct: 416 IYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAEGSMMGSGGMIVMDE 473

Query: 326 STDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
             D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G    +++D L  + K 
Sbjct: 474 D-DCMVSVSRFYLDFTVEESCGKCTPCRIGNKRLLEMLNKITEGRGTMKDLDALSTLGKV 532

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           I+   +C LG  +  P+   + NF
Sbjct: 533 IKDTALCGLGQTSPNPVLSTLNNF 556


>gi|197301314|ref|ZP_03166399.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
 gi|197299632|gb|EDY34147.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
          Length = 628

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 157/404 (38%), Positives = 239/404 (59%), Gaps = 7/404 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + + +S G ++ ++K+L E     ++ E+ AS LRGRGG GF TG KW
Sbjct: 149 VLKNCGHIDAEHIEEYISTGGYEALEKVLFEMTPQEVVEEISASNLRGRGGGGFPTGYKW 208

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S + +   ++  Y+V N DE +PG   DR IM  +PH +IEG +I ++A+GA   +IYVR
Sbjct: 209 SQVARQ-EEKTRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIGAYAVGAREGYIYVR 267

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184
            E+      L+ A+ +   SGLLG +  LG D    +H   GAGA++CGE +AL  S+EG
Sbjct: 268 AEYPLAISRLKRAISQAEESGLLGDHI-LGTDFSFRLHINRGAGAFVCGEGSALTASIEG 326

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+G PR+KPP     GL+G PT +NNVE+ A VP I+ +GA W+   G E + GTK F++
Sbjct: 327 KRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIINKGAEWFRSIGPEKSPGTKAFAL 386

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V +   +E  M  T  E+I    GG   G     AV  GG S  CL +  +  + +D
Sbjct: 387 TGSVRHTGLIEVPMGTTLREVIYDI-GGGIKGDGAFKAVQIGGPSGGCLVSKDLDVS-LD 444

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D LK+MG+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  M+ ++ER
Sbjct: 445 FDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 504

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +V G  +  ++DLL E++  I    +C LG +AA P+   +K F
Sbjct: 505 IVAGNGKLEDLDLLEELANMITETALCGLGKSAALPVMSTLKVF 548


>gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 616

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 221/367 (60%), Gaps = 4/367 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ V+ASGLRGRGG GF TG KW F  +  S    Y++ NADE +PG   DR ++  +P
Sbjct: 174 VIDVVEASGLRGRGGGGFPTGKKWRFAAQRKSAE-KYIICNADEGDPGAFMDRAVLEGDP 232

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H ++E  VIA +A+GA    IY+R E+    + L+ A+++  A  +LG +    G+D D+
Sbjct: 233 HAVLEAMVIAGYAVGARHGVIYIRAEYPLAIKRLETALEQARALRVLGGDILGSGFDFDL 292

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            + +GAGA++CGEETAL++S+EGK+G P  KPPFPA  GL+  PT VNNVE++A +P I+
Sbjct: 293 KLKYGAGAFVCGEETALIQSIEGKRGMPTYKPPFPAVEGLWKRPTIVNNVETLANIPAIM 352

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R GA W+ G G E++ GTK+F+++G V+    VE  M  T  E+I    GGI  G     
Sbjct: 353 RNGAQWFRGIGTESSPGTKVFALAGKVDRVGLVEVPMGTTLREIIFGVGGGIHEG-KAFK 411

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  CL +  +   I DYD LK  GS +G+  +IVMD    ++        F  
Sbjct: 412 AVQTGGPSGGCLTSANLDLPI-DYDSLKAAGSMMGSGGMIVMDEDDCMVDVAKFFLEFTM 470

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR G+  +  V++R+ KG   + +++ +  ++  +   ++C LG  A  P+
Sbjct: 471 DESCGKCLPCRIGSKQLHLVLDRISKGEGAQEDLESIRSIAAAMATASLCGLGQTAPNPV 530

Query: 402 QGLIKNF 408
              ++NF
Sbjct: 531 LSTLRNF 537


>gi|330882979|gb|EGH17128.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 334

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 139/335 (41%), Positives = 197/335 (58%), Gaps = 6/335 (1%)

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW  MPK  S    YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  
Sbjct: 2   TGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRG 61

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +I++RGE++   + L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ 
Sbjct: 62  YIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALIN 121

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRG 238
           SLEG++  PR KPPFPA VG++G PT VNNVE++  VP I+  G  WY    RE   + G
Sbjct: 122 SLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHG 181

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKL   SG V  P   E    +   EL E + GG+R G+  L    PGG+    L    +
Sbjct: 182 TKLMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGF-KLKCWQPGGAGTGFLLPEHL 240

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A M   G+ ++G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W 
Sbjct: 241 D-AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWS 299

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICA 392
           ++++  + KG  Q  +I+ L  +   +  G+T CA
Sbjct: 300 VKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTFCA 334


>gi|310779016|ref|YP_003967349.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309748339|gb|ADO83001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 565

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 141/383 (36%), Positives = 219/383 (57%), Gaps = 14/383 (3%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           +++ +D I+ +++ S LRGRGGAGF TG KW    +   D+  ++V NADE EPGT KDR
Sbjct: 195 IKRDKDSILEDIEKSNLRGRGGAGFPTGFKWRLAKEEKKDK-KFIVCNADEGEPGTFKDR 253

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            I+      ++EG  IA++ IGA   FIY+RGE+   RE+L+  +++   +GLLG+ ++ 
Sbjct: 254 YILHKNFQRVLEGMSIAAYVIGASKGFIYLRGEYTYIRETLEKEIEKRRRAGLLGNETEK 313

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G + DI +  GAGAYICGEETAL+ESLEGK+G+PR KPP+P + G    PT VNNVE+  
Sbjct: 314 GLNFDIEIRMGAGAYICGEETALIESLEGKRGEPRNKPPYPVDTGFMNYPTLVNNVETFL 373

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            V  I  +G   +  +G ++++GTK FSISG        E    +T D+++      +  
Sbjct: 374 NVNLICEKGVESFGQYGTDSSKGTKFFSISGDCKNEGIYELPFGVTIDKVV-----ALAE 428

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
           G D + AV  GG++  C+        I  ++     GS      +I+ + + D++     
Sbjct: 429 GKD-IKAVQIGGAAGECVQKNDFSKRIA-FEAASTGGS------IILFNENRDMLDIAEN 480

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
              F+  ESCGQCTPCREGT  ++  +  L KG      ++ L E+ + +E  + C LG 
Sbjct: 481 FMEFFVEESCGQCTPCREGTYRILEGIRLLKKGKCSVTYLNKLLELCETVELASKCGLGQ 540

Query: 396 AAAWPIQGLIKNFRPLIEERIDQ 418
            +    + +++NF+  I  R+ +
Sbjct: 541 LSTVAFRSIVENFKEEILGRLPE 563


>gi|126665578|ref|ZP_01736560.1| formate dehydrogenase, beta subunit [Marinobacter sp. ELB17]
 gi|126630206|gb|EBA00822.1| formate dehydrogenase, beta subunit [Marinobacter sp. ELB17]
          Length = 519

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 147/390 (37%), Positives = 219/390 (56%), Gaps = 3/390 (0%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           + D ++ G +  + K        I++EVKASGLRGRGGA F  G+KW  +     ++  Y
Sbjct: 119 IEDYIAHGGFAGLKKAAALTTQGIVDEVKASGLRGRGGAAFPAGIKWQTVLDEPQNQQKY 178

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NADE + GT  DR +M  +P+ LIEG  IA  A+GA   FIYVR E++  ++ L  A
Sbjct: 179 VVCNADEGDSGTFADRLVMECDPYMLIEGMTIAGLAVGATLGFIYVRSEYLLSQKMLDEA 238

Query: 140 VDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           +      G LG N    G    + V  GAGAYICGEET+LLESLEGK+G  R KPP PA 
Sbjct: 239 IRRAEVLGYLGDNVCGNGRSFRLEVRLGAGAYICGEETSLLESLEGKRGLVRSKPPLPAI 298

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT VNNV S+A VP I+  G   Y+ +G   + GT    ++G++ +   +E + 
Sbjct: 299 KGLFGQPTVVNNVLSLAAVPYIMAHGGKAYADYGMGRSLGTLPIQLAGNIKHGGLIELAF 358

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
             +  +++E   GG   G   + AV  GG  +  LP  Q     MDY+   ++G+G+G  
Sbjct: 359 GASLRKVLEDFGGGTFTGRP-MRAVQVGGPLMAYLPESQWD-TPMDYEAFAKLGAGIGHG 416

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            V+  D + D+ +       F   ESCG+CTPCR G+   + V++R+  G  +   + LL
Sbjct: 417 GVVAFDDTVDMGEQARFAMEFCAVESCGKCTPCRIGSVRGVEVIDRIRAGEHRDDNLVLL 476

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            E+ + +   ++CA+G    +P+Q ++K+F
Sbjct: 477 QELCETMVDGSLCAMGGMTPFPVQSVMKHF 506


>gi|146341846|ref|YP_001206894.1| putative formate dehydrogenase subunit beta [Bradyrhizobium sp.
           ORS278]
 gi|146194652|emb|CAL78677.1| Putative formate dehydrogenase beta subunit [Bradyrhizobium sp.
           ORS278]
          Length = 518

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 213/392 (54%), Gaps = 4/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G +  + + L    D +I EV  SGLRGRGGAGF TG+KW  + +  +DR  
Sbjct: 116 SLEDYRAHGGYKGLTRALTLSPDAVIAEVTTSGLRGRGGAGFPTGIKWKTVSQTAADR-K 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ NADE + GT  DR +M  +P  LIEG  I   A+GA   +IY R E+     ++  
Sbjct: 175 YVICNADEGDSGTFADRMLMEGDPFVLIEGMTICGIAVGATKGYIYTRSEYPHAIATMTK 234

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+D    +GLLG   S   Y  ++ V  GAGAY+CGEETAL+ESLEGK+G  R KPP PA
Sbjct: 235 AIDIAKKAGLLGDKISGSNYTFELEVRTGAGAYVCGEETALMESLEGKRGIVRAKPPLPA 294

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + GL+G PT VNN+ S A +P IL  GA  Y+ FG   +RGT    I+G+V +    E +
Sbjct: 295 HHGLFGKPTVVNNLLSFAAIPFILDEGAKAYADFGMGRSRGTMPIQIAGNVKFGGLFETA 354

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  EL++   GG   G   + AV  GG      P   +     DY+        +G 
Sbjct: 355 FGITLGELVDDIGGGTFTGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAAKEGLIGH 412

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ K       F   ESCG+CTPCR G+      ++++ +G      I L
Sbjct: 413 GGIVVFDDTVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGAETIDKIRRGERVAENIAL 472

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++   ++  ++CALG    +P+   +K+FR
Sbjct: 473 VEDLCGTMKLGSLCALGGFTPYPVLSALKHFR 504


>gi|114705203|ref|ZP_01438111.1| putative nad-dependent formate dehydrogenase beta subunit protein
           [Fulvimarina pelagi HTCC2506]
 gi|114539988|gb|EAU43108.1| putative nad-dependent formate dehydrogenase beta subunit protein
           [Fulvimarina pelagi HTCC2506]
          Length = 517

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 216/392 (55%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G    + + +E G + I+ EVK SGLRGRGGAGF TG+KW  + K    +  
Sbjct: 116 SLEDYEAHGGLLGLRRAIEMGSEAIVEEVKESGLRGRGGAGFPTGIKWETVMKTEGPK-K 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA+ A GA   +IY+R E+      ++ 
Sbjct: 175 YIVANADEGDSGTFADRMIMEGDPFCLIEGMTIAAVATGATKGYIYLRSEYPVAIRVMRE 234

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+      G LG  S LG  +  D+ V  GAGAY+CGEET+LL+SLEGK+GQ R KPP P
Sbjct: 235 AIKRAEDFGWLGI-SVLGSAHAFDLEVRVGAGAYVCGEETSLLDSLEGKRGQVRFKPPLP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNV S+A  P IL +GA  Y  FG   +RGT    I+G+V +    E 
Sbjct: 294 AIKGLFGRPTVINNVISLASTPEILAKGAKVYKDFGIGRSRGTIPLQIAGNVKHGGLYEV 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              +T  E++E   GG   G   + AV  GG      P   +     DY+   E    +G
Sbjct: 354 PFGLTLGEIVEGIAGGTNSG-KPVRAVQVGGPLGAYFPR-SLFDTPFDYEAFAEKKGLIG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
            A +++ D + D++K       F   ESCG+CTPCR G    +  ME+++ G      ++
Sbjct: 412 HAGIVIFDDTVDMMKQARFAFEFCAVESCGKCTPCRIGAVRGLETMEKIIAGDNAAESLE 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L+ ++   +E  ++CALG    +P+   I++F
Sbjct: 472 LVEDLCNTMEFGSLCALGGFTPYPVMSAIRHF 503


>gi|224825580|ref|ZP_03698685.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002]
 gi|224602501|gb|EEG08679.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002]
          Length = 514

 Score =  255 bits (652), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 225/409 (55%), Gaps = 5/409 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q+R+     G+    SL+D  +   +  + + L      I+ EV  SGLRGRGGA F
Sbjct: 98  LKNQERLTFARVGITDPLSLADYQAHEGFAGLKRALSMDGAAIVQEVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +  +      Y+V NADE + GT  DR +M  +P  LIEG  IA  A+GA  
Sbjct: 158 PTGIKWRTV-ALAEAAQKYVVCNADEGDSGTYSDRMVMEDDPFMLIEGMTIAGLAVGATQ 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+    + L  A+     +G LG N    G    + V   AGAY+CGEETA+L
Sbjct: 217 GYIYVRSEYPHSFDVLNQAIRLAEDAGFLGENILASGKCFKLDVRKAAGAYVCGEETAML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL RGA++Y+ +G   ++GT
Sbjct: 277 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVISLASVPVILARGAAFYADYGMGRSKGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ Y   VE++  +T  EL+    GG   G   + AV  GG     LP  Q  
Sbjct: 337 LPFQLAGNLKYGGLVEKAFGLTLRELLHDFGGGSASGR-PIRAVQVGGPLGAYLPESQFD 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   ++  D + D+++       F   ESCG+CTPCR G+   +
Sbjct: 396 -TPLDYEAFAALGAVVGHGGIVAFDDTVDMVEQARYAMEFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++R+ K   + ++I LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 EVIQRIQKDEKRPQQIALLRDLCDTMLHGSLCAMGGMTPYPVLSALNHF 503


>gi|182413363|ref|YP_001818429.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
 gi|177840577|gb|ACB74829.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
          Length = 668

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 135/385 (35%), Positives = 231/385 (60%), Gaps = 4/385 (1%)

Query: 25  SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           ++G+      + E   + +I E+KASGLRGRGGAGF T MKW       +++  Y++ N 
Sbjct: 242 AQGYQALRKALFELTPEKVIGELKASGLRGRGGAGFPTWMKWQLTRAQPAEQ-RYVICNG 300

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DE +PG   DR ++  +PH+++EG ++A FA+GA   + Y+R E+ +  E ++ A+ +  
Sbjct: 301 DEGDPGAFMDRSVLESDPHSVLEGMILAGFAMGASRGYFYIRAEYPKAVERVERAIAQAR 360

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            +GLLG N    G+  +  +  GAGA++CGEETAL+ S+EG++G P  +PP+P+  GL+G
Sbjct: 361 EAGLLGENILGSGFSFNAKIRLGAGAFVCGEETALIASIEGRRGSPSPRPPYPSVRGLWG 420

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT +NNVE++A +P IL RG +WY+G+G E ++GTK+F+++G V     VE  M  T  
Sbjct: 421 RPTAINNVETLANIPAILLRGGAWYAGYGTEKSKGTKVFAVTGKVMNAQLVEVPMGTTLR 480

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           +++ + CGG+      + AV  GG S   +P   +   +  Y+ L+++GS +G+  ++VM
Sbjct: 481 QIVYEICGGVLDD-KEIKAVQTGGPSGGVIPEKHLDTPV-SYETLQQLGSIMGSGGMLVM 538

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
           D++  ++        F   ESCG+C PCR G   M+++++R+ +G     ++  L  +  
Sbjct: 539 DKNDSMVDVARFYLRFCVDESCGKCAPCRIGGYQMLQILDRISRGRGSAEDLVTLRRICT 598

Query: 384 NIEGRTICALGDAAAWPIQGLIKNF 408
            ++  ++C LG  A  P+   ++ F
Sbjct: 599 AMQKASLCGLGQTAPNPVLSTLRYF 623


>gi|144897650|emb|CAM74514.1| NADH dehydrogenase (quinone) [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 511

 Score =  255 bits (652), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 146/391 (37%), Positives = 222/391 (56%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S++D  + G +  +++ L      I+ EV  SGLRGRGGAGF TG+KW+ +    S    
Sbjct: 119 SVADYRAHGGFAGLERALTLSPSEIVEEVTQSGLRGRGGAGFPTGIKWNTVLN-ASAAEK 177

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           ++  NADE + GT  DR I+  +P  LIEG  IA+ A+GA   ++Y+R E+     +L+ 
Sbjct: 178 FVCCNADEGDSGTFADRMIIEGDPFLLIEGMTIAALAVGARQGYVYLRSEYPHAVATLRE 237

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+   Y    LG+N    G+D  + V  GAG+Y+CGEETA+LESLEGK+G  R KPP PA
Sbjct: 238 AIRRAYEQDWLGTNIHGSGHDFHLEVRVGAGSYVCGEETAMLESLEGKRGMVRAKPPIPA 297

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNV ++  VP +L +GA++Y  FG   + GT+ F ++G++     VE +
Sbjct: 298 LQGLFGQPTIVNNVLTLTSVPVVLAKGAAFYRDFGAGRSHGTQPFQLAGNIQRGGLVELA 357

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             ++  +LI ++ GG   G   L AV  GG     +P   M G   DY+ + E G+ LG 
Sbjct: 358 FGVSLHDLIYRYGGGTASGRP-LRAVQVGGPLGAYVPE-SMLGLSADYESMAEAGAMLGH 415

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D +  + +       F   ESCG+CTPCR G+     V++++V G      + L
Sbjct: 416 GGIVVFDETVRMARMARFAMDFCAVESCGKCTPCRIGSTRGREVLDKIVAGENVADNMAL 475

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++   +   ++CA+G  A  P+Q  I++F
Sbjct: 476 LDDLCTVMADGSLCAMGGLAPLPVQSAIRHF 506


>gi|219849354|ref|YP_002463787.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485]
 gi|219543613|gb|ACL25351.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485]
          Length = 535

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/375 (38%), Positives = 229/375 (61%), Gaps = 4/375 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +IN +  SGLRGRGGAG+ TG+KW+ + K   +R  +++ NADE +PG   DR ++  +P
Sbjct: 156 VINVITRSGLRGRGGAGYPTGLKWATVAKSPGER-KFVICNADEGDPGAFMDRSVLESDP 214

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H ++EG  IA++A+GA   FIYVRGE+    + LQ A+ +    GLLG+   + G++  I
Sbjct: 215 HLVLEGMAIAAYAVGAEQGFIYVRGEYPLAIDRLQKAIVQARRLGLLGAQIFESGFNFRI 274

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGA++CGEETAL+ S+EG++GQPR +PP+PA  GL+G PT +NNVE+ A +  I+
Sbjct: 275 DIRVGAGAFVCGEETALIASIEGRRGQPRPRPPYPAESGLWGMPTLINNVETFANITAII 334

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             G  W++  G E ++GTK+F+++G +     +E  M IT  E++E+  GG   G   + 
Sbjct: 335 ENGPEWFANIGTEKSKGTKIFALTGKIRNTGLIEVPMGITLREIVEEIGGGTPDG-SPVK 393

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  C+PA      + DY+ L  +GS +G+  ++VMD  T+++        F K
Sbjct: 394 AVQTGGPSGGCIPASLFDTPV-DYESLAAVGSIMGSGGMVVMDEHTNMVDVARFYMEFCK 452

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+C PCR GT  +  ++ ++  G A+  ++  + E+ + +   ++C LG +A  P+
Sbjct: 453 EESCGKCIPCRVGTVQLFNMLTKVRNGQAKGSDLVKIEELCELMRETSLCGLGQSAPNPV 512

Query: 402 QGLIKNFRPLIEERI 416
              +  FR   E+ I
Sbjct: 513 LSTLHYFRHEYEQLI 527


>gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
 gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
          Length = 635

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 154/399 (38%), Positives = 238/399 (59%), Gaps = 9/399 (2%)

Query: 15  LQGKSLSDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ + ++R G++   D +L K    +I+ +K SGLRGRGG GF TG+KW F  K  
Sbjct: 164 IDSENIEEYIAREGYFALADCLLNKQPADVIDIIKRSGLRGRGGGGFPTGLKWEFASKQV 223

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           S+   Y+V NADE +PG   DR IM  +PH+++E   I  ++IG+    +Y+R E+    
Sbjct: 224 SNV-KYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGSSKGLVYIRAEYPLAI 282

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
             L+ A+++    GLLG +  LG D   DI + +GAGA++CGEETAL+ S+EGK+G+P L
Sbjct: 283 NRLKKAIEQAREYGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTL 341

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N  
Sbjct: 342 KPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFASIGTERSKGTKVFALAGKINNV 401

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M  T  E+I +  GG   G     AV  GG S  CL    +   I D+D L   
Sbjct: 402 GLIEVPMGTTLREVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAA 459

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           GS +G+  +IVMD   D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G  
Sbjct: 460 GSMMGSGGMIVMDED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGRG 518

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            ++++D L  + + I+   +C LG  +  P+   + NFR
Sbjct: 519 TEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFR 557


>gi|148254529|ref|YP_001239114.1| putative formate dehydrogenase subunit beta [Bradyrhizobium sp.
           BTAi1]
 gi|146406702|gb|ABQ35208.1| formate dehydrogenase beta subunit [Bradyrhizobium sp. BTAi1]
          Length = 518

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 213/392 (54%), Gaps = 4/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G +  + + L    D +I EV  SGLRGRGGAGF TG+KW  + +  +DR  
Sbjct: 116 SLDDYRAHGGYKGLTRALTLTPDAVIAEVTTSGLRGRGGAGFPTGIKWKTVSQTAADR-K 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ NADE + GT  DR +M  +P  LIEG  I   A+GA   +IY R E+     ++  
Sbjct: 175 YVICNADEGDSGTFADRMLMEGDPFVLIEGMTICGIAVGATKGYIYTRSEYPHAIATMAK 234

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++    +GLLG   +   Y  D+ V  GAGAY+CGEETAL+ESLEGK+G  R KPP PA
Sbjct: 235 AIEIAKKAGLLGDKIAGSNYTFDLEVRTGAGAYVCGEETALMESLEGKRGVVRAKPPLPA 294

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + GL+G PT VNN+ S A +P IL  GA  Y+ FG   +RGT    I+G+V +    E +
Sbjct: 295 HHGLFGKPTVVNNLLSFAAIPFILDEGAKAYADFGMGRSRGTMPIQIAGNVKFGGLFETA 354

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  EL++   GG   G   + AV  GG      P   +     DY+        +G 
Sbjct: 355 FGITLGELVDDIGGGTFTGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAAKDGLIGH 412

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ K       F   ESCG+CTPCR G+      ++++ +G      I L
Sbjct: 413 GGIVVFDDTVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGAETIDKIRRGERVAENIAL 472

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++   ++  ++CALG    +P+   +K+FR
Sbjct: 473 VEDLCGTMKLGSLCALGGFTPYPVLSALKHFR 504


>gi|262275220|ref|ZP_06053030.1| NAD-dependent formate dehydrogenase beta subunit [Grimontia
           hollisae CIP 101886]
 gi|262220465|gb|EEY71780.1| NAD-dependent formate dehydrogenase beta subunit [Grimontia
           hollisae CIP 101886]
          Length = 530

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 231/414 (55%), Gaps = 13/414 (3%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  QDR+ F  +  +    + D  S+G +D + + L      +++EVKASGLRGRGGA F
Sbjct: 106 LKRQDRLTFERVGVVDPLDVEDYCSKGGFDGLKRALTMTTQEMLDEVKASGLRGRGGAAF 165

Query: 61  STGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
            TG+KW    +  +D+P    Y++ NADE + GT  DR +M  +P TLIEG +I + ++G
Sbjct: 166 PTGIKW----QTVADQPSGQKYVICNADEGDSGTFADRMLMEGDPLTLIEGMIICALSVG 221

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176
           A   ++Y R E+    +    A++  YA+G LG +    G   D+ +  GAGAYICGEET
Sbjct: 222 ASQGYVYTRSEYPNACKIFTKAIENAYAAGYLGPDICGSGKHFDLELRMGAGAYICGEET 281

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           +L+ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP I  +GA  Y  FG+  +
Sbjct: 282 SLMESLEGKRGLVRNKPPLPAIEGLFGRPTVINNVISLASVPIIFSKGADHYKDFGQGRS 341

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GT    ++G++  P   E +  +T  EL+    GG + G  N L  +  G  +    A 
Sbjct: 342 LGTMPIQLAGNIKRPGLFELAFGVTIRELLFDFGGGSKTG--NPLKAVQIGGPLGAYIAE 399

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           +     +DY+ L   G+ LG   ++  D  TD+ +       F   ESCG+CTPCR G  
Sbjct: 400 KDWDTELDYEHLAARGAMLGHGGIVAFDEQTDMSQMARFAMEFCALESCGKCTPCRIGAV 459

Query: 357 WMMRVMERLVKGIAQKREID--LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             + V+++L++    ++     LL ++ + +E  ++CA+G    +P++  +K+F
Sbjct: 460 RGVEVIDQLLRTTGDEKSAHKALLDDLCETMEQGSLCAMGGMTPFPVKSALKHF 513


>gi|307823547|ref|ZP_07653776.1| NADH dehydrogenase (quinone) [Methylobacter tundripaludum SV96]
 gi|307735532|gb|EFO06380.1| NADH dehydrogenase (quinone) [Methylobacter tundripaludum SV96]
          Length = 517

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 213/392 (54%), Gaps = 4/392 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
            SL+D +    +  +   L   ++ I+  V  SGLRGRGGA F TG+KW  +    S + 
Sbjct: 116 SSLTDYIDNDGYRGLKNALAMTQEQIVQAVTDSGLRGRGGAAFPTGIKWKTVLNTASLQ- 174

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ NADE + GT  DR +M  +P  LIEG  IA  A+ A   +IY+R E+    E L 
Sbjct: 175 KYIICNADEGDSGTFSDRMVMEGDPFVLIEGMTIAGLAVDATQGYIYLRIEYPHAFEVLN 234

Query: 138 AAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           AA+   Y  G LG N +  G   ++ V  GAGAY+CGEET+L+ESLEGK+G  R KPP P
Sbjct: 235 AAIATAYQEGYLGENIQGSGKTFNLEVRLGAGAYVCGEETSLMESLEGKRGLVRFKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT VNNV S+A +P IL +G  +Y  FG   +RGT    ++G++  P  VE 
Sbjct: 295 AISGLFGQPTVVNNVISLASIPVILNKGGDYYRDFGMGRSRGTLPVQLAGNIKRPGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              +T  EL+    GG   G   + AV  GG     LP  Q     +DY+    + + +G
Sbjct: 355 GFGLTLRELLYDFGGGAASGRP-IRAVQVGGPLGAYLPESQFD-TPLDYEAFAAIWAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              ++V D + ++ +       F K ESCG+CTPCR G+   + VM+ ++ G    + I 
Sbjct: 413 HGGIVVFDDTVNMAEMARYSMEFCKIESCGKCTPCRIGSTRGVEVMDDIINGRNLDKNIP 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CALG    +P+   + +F
Sbjct: 473 LLRDLCDTLLNGSLCALGGMTPYPVLSALNHF 504


>gi|237737513|ref|ZP_04567994.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
 gi|229419393|gb|EEO34440.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
          Length = 592

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 150/406 (36%), Positives = 230/406 (56%), Gaps = 5/406 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           + R+  N   +  +++ D +    +   +K I E  ++++I  +  SGLRGRGG GF TG
Sbjct: 112 ERRVLKNCGVIDPENIDDFLRNDGYKAAEKAISEMTKEFVIKNIIDSGLRGRGGGGFPTG 171

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW    K  +++  Y+V NADE +PG   DR I+  +PH++IEG +IA +AIGA    +
Sbjct: 172 IKWDIASKNHAEQ-KYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKGLV 230

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+      L  A+      G LG N     ++ DI +  GAGA++CGEETAL+ S+
Sbjct: 231 YIRAEYPLAISRLDKAIVSARKRGYLGKNLFGTDFEFDIEIKFGAGAFVCGEETALIHSM 290

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G+P  KPP+PA  G +  PT VNNVE++  VP I+  G  W+   G E + GTK+F
Sbjct: 291 EGKRGEPTSKPPYPAEKGFWDMPTVVNNVETLVNVPRIILNGVEWFREVGTEKSPGTKVF 350

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           ++SG +N    VE  M I+  E+I +   GI+GG     AV  GG S  CL    +   I
Sbjct: 351 ALSGKINNVGLVEVPMGISLREIIFEIGEGIKGG-KKFKAVQTGGPSGGCLNEEDLDTPI 409

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            D+D L   G+ +G+  ++VMD    ++        F   ESCG+CTPCR G   +  ++
Sbjct: 410 -DFDSLASKGAIMGSGGMVVMDEDDCMVSVAKFFLEFTLDESCGKCTPCRIGNTRLYEIL 468

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +R+ KG  +  ++ LL E+S+ I+  ++C LG  +A P+   +  F
Sbjct: 469 DRITKGKGKLEDLALLKELSECIKATSLCGLGQTSANPVLSTLNKF 514


>gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 617

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 150/414 (36%), Positives = 240/414 (57%), Gaps = 15/414 (3%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
           T    +   L  +  +SL D ++ G +  + KIL +   + +I++V+ SGLRGRGG GF 
Sbjct: 134 TQNPLVLRKLDAIDPESLDDYLALGGYRTLRKILFQMTPERVIDQVEKSGLRGRGGGGFL 193

Query: 62  TGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           TG KW    ++C   P    +++ N DE +PG   DR +M  +PH +IEG ++ ++AIGA
Sbjct: 194 TGRKW----RLCRQVPGEVKFIICNGDEGDPGAFMDRAVMEGDPHAVIEGLIVGAYAIGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEE 175
              +IYVR E+    + L  AV++    G LG+N   SK  +D+ I    GAGA++CGEE
Sbjct: 250 LKGYIYVRHEYPLAVKRLTRAVEQARDFGFLGTNILRSKFSFDIKI--SQGAGAFVCGEE 307

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ S+EG+ G+P  +PP+P   GL+G PT +NNVE++A +P I+  GA  ++  G E 
Sbjct: 308 TALIASIEGRIGEPMPRPPYPIQAGLFGLPTVINNVETLANIPEIINLGAEHFAALGTEK 367

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           ++GTK+FS+ G VN    +E  M  +   ++    GGI G  +   AV  GG S  C+P 
Sbjct: 368 SKGTKVFSLVGAVNNTGLLEVPMGTSLRHIVYDLGGGIPGNHE-FKAVQTGGPSGGCIPK 426

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
            Q     +DYD L+++GS +G+  +IVMD  + ++        F   ESCG+CTPCREG 
Sbjct: 427 -QFLDLPVDYDSLQQVGSIMGSGGMIVMDTKSCMVDVARYFISFLMQESCGKCTPCREGL 485

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             +  ++  +  G  +++ + ++ ++ + +   ++C LG +AA P+   +K FR
Sbjct: 486 KQLHAILTDITSGRGEEKHLAMMEDLCRTMASASLCGLGQSAANPVLSTLKYFR 539


>gi|209551211|ref|YP_002283128.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536967|gb|ACI56902.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 518

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/391 (37%), Positives = 214/391 (54%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL+D  S G    + + +      ++ EV  SGLRGRGGAGF TG+KW  +     DR  
Sbjct: 117 SLADYESHGGLAGLRRAVSMTSAEVVKEVTDSGLRGRGGAGFPTGIKWKTVLDAVGDR-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA   ++Y R E+     ++ A
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLATGATKGYVYTRSEYPHAIAAMTA 235

Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV     +G+LG S    G   DI V  GAGAY+CGEETALL SLEGK+G  R KPP PA
Sbjct: 236 AVGIARQAGILGLSVLGSGRAFDIEVRTGAGAYVCGEETALLNSLEGKRGVVRAKPPLPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RGT    I+G+V Y    E +
Sbjct: 296 HKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYAGLYETA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             ++  +++++  GG   G   + AV  GG      P   +     DY+        +G 
Sbjct: 356 FGLSLGDIVDRIGGGTATGR-PVKAVQVGGPLGAYFPR-ALFDTPFDYEAFAAKDGLIGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D + D++K       F   ESCG+CTPCR G+   +   +++  GI  ++   L
Sbjct: 414 AGLVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETADKIAHGIEPEKNRAL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++   ++  ++CALG    +P+   + +F
Sbjct: 474 LADLCNTMKFGSLCALGGFTPYPVMSAMTHF 504


>gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF
           [Desulfatibacillum alkenivorans AK-01]
          Length = 633

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/406 (36%), Positives = 232/406 (57%), Gaps = 6/406 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+  +    + D ++ G +  + K L     + ++ EV+ SG+RGRGGAGF  G KW
Sbjct: 152 VLKNIGTIDPTDIYDYIAVGGYQALAKALTTMTPEQVLEEVEKSGIRGRGGAGFPAGRKW 211

Query: 67  --SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
             +   K   ++P Y+VVN DE +PG   D  +M  +PH ++EG ++ ++A+G+   ++Y
Sbjct: 212 RGAVQAKERKNQPLYVVVNGDEGDPGAFMDGSVMEGDPHAVLEGLILGAYAMGSEKGYMY 271

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           VR E+    + L+ A+      GLLG N    G+  D  ++ GAGA++CGE TAL  S+E
Sbjct: 272 VRAEYPLAIQHLEMAMAAARELGLLGDNILNTGFCFDAQINRGAGAFVCGESTALFTSIE 331

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK G+PR K       GL+GCPT +NNVE+ A +P I+ +GA WY+  G  NN GTK+FS
Sbjct: 332 GKAGEPRPKYVRSVEEGLWGCPTVLNNVETWANIPKIIDKGAEWYASIGSPNNTGTKVFS 391

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           + G VN    VE  +  +   +IE   GGI GG +   AV  GG S  C+P  + + A +
Sbjct: 392 LVGKVNNVGLVEVPLGTSLSTIIEDIGGGIPGGGE-FKAVQTGGPSGGCIPY-KHKDAPV 449

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L ++GS +G+  +IVMD+   ++        F + ESCG+C PCR G   M  +++
Sbjct: 450 DYDSLTKLGSMMGSGGMIVMDKRDCVVDVARYFLKFLEEESCGKCNPCRLGLTRMREILD 509

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
              KG   +++I+ L  ++ +I+   +CALG +A  P+   +  F+
Sbjct: 510 DFSKGCGSEQDIEDLMSLATSIQDGALCALGTSAPNPVLTTLHFFK 555


>gi|317404656|gb|EFV85052.1| NAD-dependent formate dehydrogenase beta subunit [Achromobacter
           xylosoxidans C54]
          Length = 523

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 151/410 (36%), Positives = 229/410 (55%), Gaps = 6/410 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G    + + L      I+ E+  SGLRGRGGA F
Sbjct: 101 LKQQERLTFARVGVIDPLSLQDYAAHGGLQGLKRALAMEPAAIVEEMVTSGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +DR  Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWKTVLGSPADR-KYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA++     G LG +    G   D+ V  GAGAYICGEET+LL
Sbjct: 220 GYIYVRSEYPHAIATLEAAIERARGVGWLGDDVHGSGRRFDLEVRKGAGAYICGEETSLL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +GA++Y  +G   + GT
Sbjct: 280 ESIEGKRGVVRAKPPLPAIAGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE++  ++  +L+    GG   G   L AV  GG     LP  Q  
Sbjct: 340 LPFQLAGNLKQGGLVEKAFGLSLRDLLYTFGGGSASG-RPLRAVQVGGPLGAYLPESQWD 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + +G   ++  D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 399 -VPLDYEAYVQISAMIGHGGLVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457

Query: 360 RVMERLVK-GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             ++++   G  +++++ LL ++   + G ++CALG  A +P+   + +F
Sbjct: 458 ETIDKITAGGPGREQQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHF 507


>gi|307689027|ref|ZP_07631473.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 436

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/348 (39%), Positives = 208/348 (59%), Gaps = 8/348 (2%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ NADE +PG   D  I+  +PH +IEG +IA+++IG+   +IYVR E+    + L+
Sbjct: 29  KYVICNADEGDPGAFMDESILVGDPHKVIEGMIIAAYSIGSDQGYIYVRAEYPLAIKRLE 88

Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            A+D+    G LG         ++++I V  GAGA++CGEETAL+ S+EGK+G PR KPP
Sbjct: 89  KAIDQAKQYGFLGKEMFGEVFSFNIEIKV--GAGAFVCGEETALIASIEGKRGMPRSKPP 146

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GL+G PT +NNVE+ A +P I+ RGA ++   G + ++GTK+FS++G +     V
Sbjct: 147 FPAEEGLWGKPTNINNVETYANIPIIINRGAEFFRSIGTKGSKGTKVFSLTGKIENTGLV 206

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M I+  E+I    GG+        AV  GG S  CL   ++   + DYD L ++G+ 
Sbjct: 207 EVPMGISMKEIIYDIGGGVPNNR-KFKAVQIGGPSGGCLTEEKLDLPV-DYDSLLQVGAI 264

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  ++VMD    ++        F   ESCG+CTPC EGT  M+ ++E++V G A+  +
Sbjct: 265 MGSGGLVVMDEDNCMVDMARFFLNFTVEESCGKCTPCSEGTRRMLEILEKIVNGRAKIED 324

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +D L  ++K I+   +C LG AA  PI   +K FR   EE I +Y +C
Sbjct: 325 LDQLENLAKTIKDTALCGLGQAAPNPILSTLKYFRHEYEEHI-KYKKC 371


>gi|293607184|ref|ZP_06689526.1| NADH dehydrogenase (quinone) [Achromobacter piechaudii ATCC 43553]
 gi|292814518|gb|EFF73657.1| NADH dehydrogenase (quinone) [Achromobacter piechaudii ATCC 43553]
          Length = 530

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 154/413 (37%), Positives = 231/413 (55%), Gaps = 9/413 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G    + + L      II+E+  SGLRGRGGA F
Sbjct: 105 LKQQERLTFARVGVIDPLSLQDYAAHGGLAGLKRALAMDPAHIIDEMVTSGLRGRGGAAF 164

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +     ++  Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 165 PTGIKWKTVAGTPGEQ-KYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 223

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+    E+L+AA+    A G LG++    G   D+ V  GAGAYICGEET+LL
Sbjct: 224 GYIYVRSEYPHAIETLEAAIVRARAVGWLGADVHGSGRRFDLEVRKGAGAYICGEETSLL 283

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +GA++Y  +G   + GT
Sbjct: 284 ESLEGKRGVVRAKPPLPAISGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 343

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE++  ++  EL+    GG   G   L AV  GG     LP  Q  
Sbjct: 344 LPFQLAGNVKQGGLVEKAFGLSLRELLYDFGGGSATG-RPLRAVQVGGPLGAYLPESQWD 402

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + +G   ++  D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 403 -VPLDYEAYIQISAMIGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 461

Query: 360 RVMERLVKGIA----QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             ++++    A    +++++ LL ++   + G ++CALG  A +P+   + +F
Sbjct: 462 ETIDKIAASGANPAQREQQVHLLRDLCDTMMGGSLCALGGMAPYPVLSALNHF 514


>gi|239817042|ref|YP_002945952.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus S110]
 gi|239803619|gb|ACS20686.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus S110]
          Length = 612

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 147/374 (39%), Positives = 217/374 (58%), Gaps = 21/374 (5%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKD 94
           E+  + II  ++ SGLRG GGAGF  G KW    ++  D+P    + VN DE EPGT KD
Sbjct: 253 EEDAEAIIKTMEDSGLRGLGGAGFPAGRKW----RIVRDQPAPRLMAVNIDEGEPGTFKD 308

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
           R  +  +PH  +EG V+A+  +G    +IY+R E+   R  L+  +    A         
Sbjct: 309 RTYLERDPHRFLEGLVVAAQIVGIEQCYIYLRDEYHDCRALLETELARLQADPPCALPR- 367

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                 I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT  +N E++
Sbjct: 368 ------IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETL 421

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
             V  I+ +GA+W+SGFGR   +G + FS+SG V +P        IT  ELI+++CGG+ 
Sbjct: 422 YWVRDIVEKGAAWFSGFGRHGRKGLRSFSVSGRVKHPGVKLAPAGITVQELIDEYCGGML 481

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
            G  +L A +PGG+S   LPA +M    +D+D L+  G  +G+AAV+V+ +      A  
Sbjct: 482 DG-HSLYAYLPGGASGGILPA-RMNDIPLDFDTLQPYGCFIGSAAVMVLSQHDRARDAAL 539

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394
            +  F++HESCGQCTPCR GT     +M   V   A       L ++++ +   +IC LG
Sbjct: 540 NVMRFFEHESCGQCTPCRVGTAKAAALMHAPVWDNAT------LEDLAQVMGDASICGLG 593

Query: 395 DAAAWPIQGLIKNF 408
            AA  PI+ + + F
Sbjct: 594 QAAPNPIRCIQQYF 607


>gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
 gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/368 (36%), Positives = 218/368 (59%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHE 101
           +I+E+K SGLRGRGGAGF TG+KW+   +      H Y+V NADE +PG   DR ++  +
Sbjct: 185 VIDEMKKSGLRGRGGAGFPTGLKWAAAAENPRLNGHKYIVCNADEGDPGAFMDRSLLEGD 244

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160
           PH+++E   IA +A  +   +IY+R E+    E L+ A+ +   +G+LG N    G++  
Sbjct: 245 PHSVLEAMAIAGYATDSDMGYIYIRAEYPLAIERLKIAIAQAEEAGVLGENILGTGFNFK 304

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I + +GAGA++CGE TAL++S+EG +G+P +   FP   GL+  PTTVNNVE+   +P I
Sbjct: 305 IELKYGAGAFVCGEGTALIKSIEGNRGEPIVNKYFPTEHGLWQAPTTVNNVETFGNIPAI 364

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + +GA W++ FG E+++GTK+F++ G VN    VE  M  T  E++ +  GGI GG +  
Sbjct: 365 INKGADWFASFGTEDSKGTKVFALGGKVNNVGLVEVPMGTTLREIVYEIGGGIPGGKE-F 423

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AV  GG S  C+ +  +   I D+  L  +GS +G+  ++V+D +  ++        F 
Sbjct: 424 KAVQTGGPSGGCISSKDLDTPI-DFKSLASIGSMMGSGGMLVLDETDCMVDISKFFLEFT 482

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCG+CTPCR G   ++ ++ ++ +G   + ++  L  ++  I+  ++C LG  A  P
Sbjct: 483 VDESCGKCTPCRIGNRRLLEILNKICRGNGTEEDLVNLKSLATIIKNTSLCGLGKCAPNP 542

Query: 401 IQGLIKNF 408
           +   +  F
Sbjct: 543 VLSTLNCF 550


>gi|222529289|ref|YP_002573171.1| NADH dehydrogenase [Caldicellulosiruptor bescii DSM 6725]
 gi|312622465|ref|YP_004024078.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456136|gb|ACM60398.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor bescii DSM 6725]
 gi|312202932|gb|ADQ46259.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 598

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/410 (38%), Positives = 242/410 (59%), Gaps = 6/410 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG GF TG+KW F  K  
Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+   ++YVR E+    
Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           + L+ A+++    GLLG N    G++ DI +  GAGA++CGEETAL+ S+EG +G+PR +
Sbjct: 245 KRLEIAIEQARQYGLLGKNILGTGFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRPR 304

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++GTK+F++ G VN   
Sbjct: 305 PPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNTG 364

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            +E  M  T  E++E   GG   G     AV  GG S  C+PA  M   I D+D L  +G
Sbjct: 365 LIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTALG 422

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           + +G+  +IVMD  T ++        F   ESCG+C PCR GT  M+ +++++  G   +
Sbjct: 423 TMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGTE 482

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + +  RC
Sbjct: 483 EDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531


>gi|281357444|ref|ZP_06243932.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281316047|gb|EFB00073.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 573

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/393 (37%), Positives = 227/393 (57%), Gaps = 12/393 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S  D ++   +  ++K L      +++EVK SGLRGRGG GF TG KW F+    +D   
Sbjct: 112 SFEDYVAHDGYKGLEKALAMTSQQVVDEVKLSGLRGRGGGGFPTGNKWGFLAAKQADE-K 170

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L+ NADE +PG   DR +M   PH ++EG +IA++A GA   FIY R E+    + L+ 
Sbjct: 171 ILICNADEGDPGAFMDRSLMESAPHQVLEGMLIAAYATGATKLFIYCRAEYPMAIKHLKI 230

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+ + Y   L   N   G +++II+  GAGA++CGEETAL+ SLEG++G PR +PPFP +
Sbjct: 231 AIAQIYEHKL---NVVNGRELEIIIKEGAGAFVCGEETALIASLEGQRGTPRFRPPFPTD 287

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            G  G P+ +NNVE+   VP ILR GA+ ++  G E ++GTKLF+++G + +P  VE  M
Sbjct: 288 KGWMGHPSMINNVETFGNVPLILREGAAAFASVGTEGSKGTKLFALAGDLKHPGLVEVPM 347

Query: 259 SITFDELIEKHCGGIRGGWD--NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
             T  E++        GG D   + AV  GG S  C+P  ++    +DYD L+++G+ +G
Sbjct: 348 GTTLREIVFDI-----GGADPEKVKAVQTGGPSGGCIPV-ELFDTPVDYDSLRKLGAIMG 401

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  +IV+ +   +++       F   ESCG+CT CR GT  M   +ER+V G     ++ 
Sbjct: 402 SGGMIVIGKDRCMVETARYFLDFTHRESCGKCTFCRVGTTRMYETLERIVAGKGSMEDLA 461

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           LL ++   I   ++C LG  A  P+   ++ +R
Sbjct: 462 LLEDLGPKIRMGSLCGLGQTAPNPVLATLRYYR 494


>gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
 gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
          Length = 628

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 161/425 (37%), Positives = 240/425 (56%), Gaps = 15/425 (3%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   L  +++ + ++R  ++ + K L E     +I+E+K SGLRGRGG GF T
Sbjct: 145 QQRIALKNCGQLDPENIREYIARDGYEALAKALHEMQPQEVIDEIKKSGLRGRGGGGFPT 204

Query: 63  GMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           G+KW F     +D+P    Y++ NADE +PG   DR I+  +PH ++E   IA +AIGA 
Sbjct: 205 GVKWQFA----ADQPAGDKYVICNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGAQ 260

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETA 177
             ++Y+R E+    + LQ A+++    GL G +  LG D   DI +  GAGA++CGEETA
Sbjct: 261 QGYVYIRAEYPIAVKRLQIAIEQAKELGLFGEHI-LGTDFSFDIEIRLGAGAFVCGEETA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++S+EGK+G P  KPPFPA  G++G PT +NNVE+ A V  I+ +G+ W+S  G E ++
Sbjct: 320 LIQSIEGKRGMPVPKPPFPAVSGVWGKPTIINNVETYANVAQIILKGSGWFSAIGTEKSK 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +     VE  M  T  E+I +  GG   G     AV  GG S  CL    
Sbjct: 380 GTKVFALGGKIVNTGLVEIPMGTTLREVIYEIGGGCPNG-KKFKAVQTGGPSGGCLTVED 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   I D+D L  +GS +G+  +IV+D    ++        F   ESCG+CTPCR GT  
Sbjct: 439 LDTPI-DFDNLIALGSMMGSGGMIVLDEDNCMVDVARFYMEFIVDESCGKCTPCRVGTKR 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++  + +G      +D L  + K I+   +C LG  AA P+   ++ FR   E  + 
Sbjct: 498 MLELLTDICEGRGTMETLDELETLGKMIKDTALCGLGQTAANPVLSTLRLFRDEYEAHVK 557

Query: 418 QYHRC 422
           +  RC
Sbjct: 558 E-KRC 561


>gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
 gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
          Length = 600

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 211/371 (56%), Gaps = 8/371 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFM-PKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           +I+E+ ASGLRGRGGAGF TG KW F    V  D   ++  NADE +PG   DR ++  +
Sbjct: 156 VIDEILASGLRGRGGAGFPTGRKWQFTHDAVSPDGVKFVCCNADEGDPGAFMDRSVLEGD 215

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYD 158
           PH++IE   IA + IGA   +IYVR E+    + L+ A+ +    GLLG N   S   ++
Sbjct: 216 PHSVIEAMAIAGYCIGAQQGYIYVRAEYPIAVKRLEIAIKQAKEYGLLGDNIFGSDFSFN 275

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +++    GAGA++CGEETAL+ S+EGK+G+P  +PPFPAN GL+  PT +NNVE+ A + 
Sbjct: 276 LEL--RLGAGAFVCGEETALMTSIEGKRGEPHPRPPFPANKGLFERPTLLNNVETYANIT 333

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL  GA  ++  G   + GTK+F++ G +     VE  M      +IE   GG   G  
Sbjct: 334 WILNHGADKFAAIGTPKSTGTKVFALGGKITNTGLVEIPMGTPLRTVIEDIGGGCPNG-K 392

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              A   GG S  C+PA  +    MDYD L  +GS +G+  +IVMD    ++        
Sbjct: 393 KFKAAQTGGPSGGCIPA-SLIDTPMDYDSLGAIGSMMGSGGLIVMDEDNCMVDIAKFFLE 451

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F   ESCG+C+ CR GT  ++ ++ ++ +G     ++D + E+  +++   +C LG  A 
Sbjct: 452 FIVDESCGKCSVCRIGTKRLLGLLTKITEGEGTLEDLDTIEELCYHLKSSALCGLGQTAP 511

Query: 399 WPIQGLIKNFR 409
            P+   +K+FR
Sbjct: 512 NPVLSTLKHFR 522


>gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
 gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
          Length = 606

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/407 (35%), Positives = 230/407 (56%), Gaps = 7/407 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +++ D +  G ++ + K +    D II+EV+ SGLRGRGGAGF  G KW        + P
Sbjct: 127 ENIEDYLKEGGYEALKKAVSMTSDEIISEVEKSGLRGRGGAGFPAGRKWRTAASY-ENFP 185

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+  N DE +PG   DR I+  +PH +IEG  IA+ A+GA   F Y+R E+      ++
Sbjct: 186 KYVACNGDEGDPGAFMDRSILEGDPHCVIEGLAIAAVAVGAEEGFFYIRDEYDLAVRHVK 245

Query: 138 AAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            A+++  A G++G  S +G  + +++ V  G GA++CGE TAL+ S+EG+ G+PR K   
Sbjct: 246 KAIEDAKARGIIG-ESVMGSSHRLELSVVRGGGAFVCGESTALMASIEGRVGEPRAKYIR 304

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
               GL+  PT +NNVE++A +P I+++G   ++  G E + GTK+F++ G V     VE
Sbjct: 305 SVQRGLWNQPTVLNNVETLANIPVIIKKGGEAFADIGTEGSSGTKVFALVGKVKRTGLVE 364

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T   LI    GGI        AV  GG S  C+P   M    +D+D L + G+ +
Sbjct: 365 VPMGTTLRHLIYDIGGGILNNR-AFKAVQTGGPSGGCIPE-SMLDLEVDFDSLAKYGAMM 422

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD  + +++     + F   ESCG+CTPCREG   M+ ++  + +G  ++ +I
Sbjct: 423 GSGGMIVMDDRSCMVEVARYYTNFLCEESCGKCTPCREGLRRMLEILTDICEGRGREGDI 482

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +LL  + + ++  ++C+LG  AA P+   I+ FR   E  I +  RC
Sbjct: 483 ELLERLGRAMQDASLCSLGKTAANPVLTTIQYFREEYEAHIRE-KRC 528


>gi|323139483|ref|ZP_08074531.1| NADH dehydrogenase (quinone) [Methylocystis sp. ATCC 49242]
 gi|322395285|gb|EFX97838.1| NADH dehydrogenase (quinone) [Methylocystis sp. ATCC 49242]
          Length = 517

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 152/406 (37%), Positives = 225/406 (55%), Gaps = 5/406 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q+RI F     +   S+++  + G    + +  + G    I EV  SGLRGRGGAGF TG
Sbjct: 101 QNRITFARCGVIDPLSIAEYEAHGGGAGLARAFQIGPAATIEEVAKSGLRGRGGAGFPTG 160

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW  +    +D+  Y+VVNADE + GT  DR IM  +P +LIEG +I  +AI     ++
Sbjct: 161 IKWKTVADAPADQ-RYVVVNADEGDSGTFADRMIMEGDPLSLIEGMIICGYAINGTKGYV 219

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    +  QAA+D    +G LG N +  G+  DI +  GAGAY+CGEET+LLESL
Sbjct: 220 YLRSEYPVAAKVFQAAIDVARKAGWLGDNVRGSGFKFDIELRIGAGAYVCGEETSLLESL 279

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G  R KPP PA+ GL+G PT VNNV S+A  P IL +GA  Y+  G   +RGT   
Sbjct: 280 EGKRGIVRAKPPLPAHEGLFGKPTVVNNVLSMATTPMILEKGAQHYADLGVGRSRGTMPL 339

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            I+G+V Y    E    I   E++    GG R G   + AV  GG     +P   +    
Sbjct: 340 QIAGNVKYGGLFETDFGIPLGEIVNDIAGGTRSG-RPVRAVQVGGPLGAYVPV-SLFDLP 397

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            DY+      S +G   +++ D + D+         F   ESCG+CTPCR G+   +  +
Sbjct: 398 FDYEAFAAKDSLIGHGGLVIFDDTVDMAWMARFGMEFCAIESCGKCTPCRIGSTRGVETI 457

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +++ KG   +  I+LL ++   ++  ++CALG  A +P++  +++F
Sbjct: 458 DKIRKGENVEANIELLKDLCHTMKFGSLCALGGFAPYPVESALRHF 503


>gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1]
 gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1]
          Length = 606

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/376 (40%), Positives = 226/376 (60%), Gaps = 4/376 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E   + +I EVK SGLRGRGG GF+TG+KW F  K  SD+  Y+  NADE +PG   D
Sbjct: 147 LTEMTPEQVIEEVKKSGLRGRGGGGFTTGLKWEFTYKSKSDK-KYVACNADEGDPGAFMD 205

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R I+  +PH+++E   +A +AIGA   +IYVR E+    + L  A+++    GLLG    
Sbjct: 206 RSILEGDPHSVLEAMALAGYAIGADTGYIYVRAEYPIAVKRLSIAIEQAREYGLLGHGIF 265

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              ++ DI +  GAGA++CGEETAL+ES+EGK+G PR +PPFPA  G++G PT +NNVE+
Sbjct: 266 GTDFNFDIELRLGAGAFVCGEETALIESIEGKRGMPRPRPPFPAVKGVWGKPTLLNNVET 325

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A VP I+ +G  W++  G E ++GTK+F++ G +N    VE  M  T  E+I    GGI
Sbjct: 326 YANVPLIILKGGEWFARIGTEKSKGTKVFALGGKINNTGLVEIPMGTTLKEVIYGIGGGI 385

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
             G     A   GG S  CL   ++    +D+D L ++GS +G+  +I+MD    ++   
Sbjct: 386 PNG-KKFKAAQTGGPSGGCLTE-ELLDTEIDFDNLVKLGSMMGSGGMIIMDEDNCMVDIA 443

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                F   ESCG+CTPCREGT  MM ++ R+ +G  +  ++D L  +++ I+  ++C L
Sbjct: 444 RFYLDFTCDESCGKCTPCREGTKRMMEILNRITEGKGELSDLDELEHLAEYIKSSSLCGL 503

Query: 394 GDAAAWPIQGLIKNFR 409
           G  A  P+   + +F+
Sbjct: 504 GQTAPNPVLSTLSHFK 519


>gi|288818981|ref|YP_003433329.1| NAD-dependent formate dehydrogenase beta subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288788381|dbj|BAI70128.1| NAD-dependent formate dehydrogenase beta subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308752566|gb|ADO46049.1| formate dehydrogenase beta subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 521

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 152/378 (40%), Positives = 217/378 (57%), Gaps = 4/378 (1%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + K L+   + IINE+K SGLRGRGGAGF TG+KW  + K  S+   Y+V NADE + GT
Sbjct: 133 LKKALDMKPEDIINEIKRSGLRGRGGAGFPTGIKWETVLKTPSEE-KYIVCNADEGDSGT 191

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             DR IM  +P  LIE   IA  A+GA   +IY+R E+   +E LQ A++     G LG 
Sbjct: 192 FSDRMIMECDPFLLIEAMTIAGLAVGARRGYIYLRSEYPLAKEVLQEAINIACDRGYLGD 251

Query: 152 N-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
           +    G   +I ++ GAGAY+CGEETALLESLEGK+G  R +PP PA  GL+G PT VNN
Sbjct: 252 DIMGSGKSFEIELYVGAGAYVCGEETALLESLEGKRGIVRPRPPVPAVSGLWGKPTIVNN 311

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270
           V ++A VP I+R G   Y+ +G + ++GT    +SG+V     VE     T  ELI    
Sbjct: 312 VVTLATVPWIIREGGENYASYGTDRSKGTLPVQLSGNVKRGGLVEIPFGTTLRELIYDFG 371

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GG   G   + AV  GG     LP   +   I DY+  +++G  LG   ++V D + D+ 
Sbjct: 372 GGTYSG-RPVKAVQVGGPLGAYLPESMLDIPI-DYEAFQKVGGILGHGGIVVFDDTVDLW 429

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
             +     F   ESCG+CTPCR G+   + V+++L+K     + + LL ++   +   ++
Sbjct: 430 YMMRFAMEFCARESCGKCTPCRIGSQRGVEVIDKLMKDGTNGKLLTLLEDLMDVMMHTSL 489

Query: 391 CALGDAAAWPIQGLIKNF 408
           C LG  A +P+  +++NF
Sbjct: 490 CGLGGMAPYPVLSILRNF 507


>gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 152/422 (36%), Positives = 236/422 (55%), Gaps = 7/422 (1%)

Query: 4   DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD-WIINEVKASGLRGRGGAGFS 61
           +Q+R +  N   +  +S+ D ++ G +  + K L       ++ EVK + LRGRGGAGF 
Sbjct: 134 NQERNVICNNIKIDSRSIDDYLANGGYSALGKALGSMTPVQVLEEVKKANLRGRGGAGFP 193

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G+KW    +   D   Y++VNADE +PG   DR ++   PH+++EG ++  +AIGA   
Sbjct: 194 AGVKWEGS-RNAPDPVKYVIVNADEGDPGAFMDRALLEGNPHSILEGLILGGYAIGAPEG 252

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+    E++  A+ +    GLLG N    GY   + V+ GAGA++CGE TAL+ 
Sbjct: 253 YIYVRHEYPLAVENITLAIQQAQTYGLLGENILGSGYSFRVYVNQGAGAFVCGESTALMT 312

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG+ G+PR K      VGL+G PT +NNVE+ A VP I+ RGA W++  G E+++GTK
Sbjct: 313 SIEGRAGEPRPKYVRSNVVGLWGHPTVLNNVETWANVPLIINRGADWFTSIGTESSKGTK 372

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G +     VE  M I+  +++ K  GG   G     A+  GG S  C+P   +  
Sbjct: 373 IFSLVGKIANTGLVEVPMGISLRDIVYKI-GGGIPGGKKFKAIQTGGPSGGCIPESLLDL 431

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +  +D L   GS +G+  +I MD  T ++        F   ESCG+C PCREG   M  
Sbjct: 432 PV-GFDELTAAGSMMGSGGMIAMDEDTCMVDTARYFIKFLTDESCGKCVPCREGLRQMDN 490

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ +G  ++ +I+LL  +++  +   +CALG +A  P    ++ FR   E  I +  
Sbjct: 491 ILTRITEGKGREGDIELLEALAETAQEAALCALGKSAPNPFLSTLQYFRDEYEAHIRE-K 549

Query: 421 RC 422
           RC
Sbjct: 550 RC 551


>gi|291614071|ref|YP_003524228.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sideroxydans lithotrophicus ES-1]
 gi|291584183|gb|ADE11841.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sideroxydans lithotrophicus ES-1]
          Length = 603

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 207/379 (54%), Gaps = 22/379 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMR 99
           II  +KASGLRGRGGAGF TG+KW    + C D P   HY+V NADE EPGT KDR ++ 
Sbjct: 207 IIEPIKASGLRGRGGAGFPTGLKW----EACRDAPGSEHYVVCNADEGEPGTFKDRVLLN 262

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGY 157
                + EG  I + A+GA   F+Y+RGE+    E L A +     S LLG +   + G+
Sbjct: 263 SHADLVFEGMTICALAVGARKGFLYLRGEYRYLLEPLHATLQRRRESNLLGESILGRAGF 322

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D DI +H GAGAYICGEE+AL+ESLEGK+G PR +PPFP   G    PT ++NVE+    
Sbjct: 323 DFDIDIHVGAGAYICGEESALIESLEGKRGVPRNRPPFPVTHGYLQQPTAIDNVETFCQA 382

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              L  GA  Y   G   + G+KL S+SG    P   E    ++  E+++  CG +    
Sbjct: 383 VLALYLGAERYRAIGTAKSTGSKLISVSGDCPRPGIYEYPFGVSVREVLQD-CGAV---- 437

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
            N +AV   G S  C+   +    +    G +++ +     A +V D S D+ +      
Sbjct: 438 -NTIAVQVSGPSGACVGESEFDRKL----GFEDLPTA---GAFMVFDDSRDMFEVARNYV 489

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F+ HESCG CTPCR GT  +   M+++  G   + +++ +  + + ++  + C LG  A
Sbjct: 490 HFFAHESCGFCTPCRVGTSMLKSTMDKIANGHGTRYDLNEVENLDRVLQTTSHCGLGRTA 549

Query: 398 AWPIQGLIKNFRPLIEERI 416
             P+   +K+FRP  E R+
Sbjct: 550 CNPVLHTLKHFRPAYENRL 568


>gi|225175972|ref|ZP_03729964.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168560|gb|EEG77362.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 618

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/411 (37%), Positives = 236/411 (57%), Gaps = 5/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N   +   S++D +++  +  + K LE     II+EVK SGLRGRGG GF  G KW 
Sbjct: 130 VMRNCGHIDPNSITDYLAQDGYMGLAKALEMTPQEIIDEVKESGLRGRGGGGFPAGRKWE 189

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
              +V +D+  Y++ NADE +PG   DR ++  +PH++IEG  IA +AIGA    +YVR 
Sbjct: 190 SCLRVDADQ-KYVICNADEGDPGAFMDRSVLEGDPHSVIEGMAIAGYAIGATKGILYVRA 248

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+      L+ A+++     LLG N    G+D ++ +  GAGA++CGE TAL+ S+EG++
Sbjct: 249 EYPLAIRQLKIAIEQAKERNLLGKNILGSGFDFELDIFQGAGAFVCGESTALVLSIEGRR 308

Query: 187 GQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           G P+  P P  +  GL+G PT +NNV++ A V  I+ RG  W+   G EN  GT +F+++
Sbjct: 309 GMPKPLPRPRTSEEGLWGKPTLLNNVKTFACVAQIIHRGTDWFKSIGTENCPGTAVFALT 368

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G +N    +E  M I  +++I    GG+ GG     AV  GG S  CLP  +M    +D+
Sbjct: 369 GKINKSGLIEVPMGIQLEKIINDIGGGVAGGR-AFKAVQTGGPSGGCLPP-EMLNLPVDF 426

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L   GS +G+  ++VMD +T ++        F   ESCGQCTPCR GT  M+ ++  +
Sbjct: 427 DSLTAAGSMMGSGGMVVMDDTTCMVDVARYFLEFSLEESCGQCTPCRAGTEQMLTILNDI 486

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +G  ++ +IDLL E+ + I   +IC LG +A  P+   I+ FR   E  I
Sbjct: 487 SQGKGREGDIDLLVEMGEAIIDGSICGLGQSAPNPVLSTIRYFREEYEAHI 537


>gi|71278646|ref|YP_270681.1| formate dehydrogenase subunit beta [Colwellia psychrerythraea 34H]
 gi|71144386|gb|AAZ24859.1| formate dehydrogenase, beta subunit [Colwellia psychrerythraea 34H]
          Length = 537

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/394 (37%), Positives = 226/394 (57%), Gaps = 8/394 (2%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           + D +S G +  +     K    +++EVK SGLRGRGGA F TG+KW  +     ++  Y
Sbjct: 133 VDDYISHGGFVGLTNAFAKTAQQLVDEVKESGLRGRGGAAFPTGIKWQTVLNE-PEQQKY 191

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NADE + GT  DR +M  +P  L+EG +IA  ++GA   +IY+R E+ +  + L  A
Sbjct: 192 IVCNADEGDSGTFADRMLMEGDPLVLVEGMIIAGLSVGADQGYIYLRSEYPQAHDLLNKA 251

Query: 140 VDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           +    A+G LG N     ++  + V  GAGAYICGEET+LLESLEGK+G  R KPP PA 
Sbjct: 252 ISNAKAAGYLGDNICGTEHNFHLEVRLGAGAYICGEETSLLESLEGKRGLVRAKPPLPAI 311

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT VNNV S+A VP IL  G   Y  FG   +RGT    ++G++     VE + 
Sbjct: 312 EGLFGQPTVVNNVISLASVPYILSHGGDSYRDFGMGRSRGTLPIQLAGNIAQGGLVELAF 371

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            I+ +EL++++  G +     + +V  GG     LPA Q   A +DY+    +G+ LG  
Sbjct: 372 GISLNELLQQYGNGCKSKR-AMRSVQVGGPLGAYLPAEQWDTA-LDYEEFASIGAVLGHG 429

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG--IAQKRE-- 374
            ++V D + D+         F + ESCG+CTPCR G    + V+++++ G    Q+R+  
Sbjct: 430 GIVVFDDTVDMAAQARFAMEFCEVESCGKCTPCRIGAVRGVEVIDKIIDGNNDEQQRQDS 489

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +DLL+++   +E  ++CA+G    +P++  +K F
Sbjct: 490 VDLLHDLCDTMEFGSLCAMGGMTPFPVRSALKYF 523


>gi|190893704|ref|YP_001980246.1| formate dehydrogenase, beta subunit [Rhizobium etli CIAT 652]
 gi|190698983|gb|ACE93068.1| formate dehydrogenase protein, beta subunit [Rhizobium etli CIAT
           652]
          Length = 518

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/391 (37%), Positives = 215/391 (54%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SLSD  + G    + + +      I+ EV  SGLRGRGGAGF TG+KW  +     +R  
Sbjct: 117 SLSDYEAHGGLAGLRRAVSMAPAQIVKEVTDSGLRGRGGAGFPTGIKWKTVLDAPGER-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA   FIY R E+     ++  
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATKGFIYTRSEYPHAIAAMSE 235

Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV     +G+LG S    G   DI V  GAGAY+CGEETALL SLEGK+G  R KPP PA
Sbjct: 236 AVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETALLNSLEGKRGVVRAKPPLPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RGT    I+G+V Y    E +
Sbjct: 296 HKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYGGLYETA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             ++  +++++  GG   G   + AV  GG      P   +     DY+        +G 
Sbjct: 356 FGLSLGDIVDRIGGGTATGR-PVKAVQVGGPLGAYFPR-TLFDTPFDYEAFAARDGLIGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D + D++K       F   ESCG+CTPCR G+   +   +++ +GI  ++  +L
Sbjct: 414 AGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETADKIARGIEPEKNREL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++   ++  ++CALG    +P+   + +F
Sbjct: 474 LADLCNTMKFGSLCALGGFTPYPVMSAMTHF 504


>gi|118588157|ref|ZP_01545566.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Stappia aggregata IAM 12614]
 gi|118438863|gb|EAV45495.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Stappia aggregata IAM 12614]
          Length = 626

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/374 (40%), Positives = 214/374 (57%), Gaps = 21/374 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+ ++ SGLRG GGAGF+TG KW F     +++ H+++ NADE EPGT KDR ++   P
Sbjct: 228 IISAIEESGLRGCGGAGFTTGRKWRFAASERAEK-HFVICNADEGEPGTFKDRVLLTERP 286

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVD 160
           H LIEG  IA+ A+GA    +Y+RGE++  RE L   ++E    GLLG +     G+D D
Sbjct: 287 HLLIEGMTIAARAVGAREGILYLRGEYVYLRELLLQVLEERRWRGLLGKDILGVKGFDFD 346

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +  GAGAYICGEE AL+ S EG  G+P+ +PPFP N G  G PT VNNVE+      I
Sbjct: 347 IRLQLGAGAYICGEEGALISSCEGLPGEPKTRPPFPVNRGYLGYPTVVNNVETFCHAARI 406

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           L +GA+W++  G E + GTKLFS+ G    P   E     T  EL+      + GG D  
Sbjct: 407 LDKGAAWFNAMGMEGSHGTKLFSVCGDCLNPGIYELPYGHTVWELL-----AMVGGEDA- 460

Query: 281 LAVIPGGSSVPCLPAGQM--RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
            AV  GG      P+G M  R +        ++ +G    A+IV +   ++++ +     
Sbjct: 461 AAVQVGG------PSGTMIARDSFHRKLTFDDLATG---GAIIVFNGERNVLEIVEYYMS 511

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+ HESCG CTPCR G  ++ + +++  KG+A   +ID L ++S  I   + C LG  + 
Sbjct: 512 FFVHESCGYCTPCRVGNVFLQKAIQKFRKGLANPEDIDYLKDLSGTIIETSRCGLGMTSP 571

Query: 399 WPIQGLIKNFRPLI 412
            P+   +KNF PL+
Sbjct: 572 NPVLTTLKNF-PLV 584


>gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
          Length = 635

 Score =  254 bits (648), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
            G++   D +L K    +I+ +K SGLRGRGG GF TG+KW F  K  SD   Y+V NAD
Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR IM  +PH+++E   +  ++IG+    +Y+R E+      L+ A+++   
Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294

Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            GLLG +  LG D   DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G
Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N    +E  M  T  
Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVM
Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSTGSMMGSGGMIVM 471

Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           D   D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G   ++++D L  + 
Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408
           + I+   +C LG  +  P+   + NF
Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556


>gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22]
 gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22]
          Length = 635

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
            G++   D +L K    +I+ +K SGLRGRGG GF TG+KW F  K  SD   Y+V NAD
Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR IM  +PH+++E   +  ++IG+    +Y+R E+      L+ A+++   
Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294

Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            GLLG +  LG D   DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G
Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N    +E  M  T  
Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVM
Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 471

Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           D   D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G   ++++D L  + 
Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408
           + I+   +C LG  +  P+   + NF
Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556


>gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
 gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
          Length = 635

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
            G++   D +L K    +I+ +K SGLRGRGG GF TG+KW F  K  SD   Y+V NAD
Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR IM  +PH+++E   +  ++IG+    +Y+R E+      L+ A+++   
Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294

Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            GLLG +  LG D   DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G
Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N    +E  M  T  
Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVM
Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 471

Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           D   D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G   ++++D L  + 
Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408
           + I+   +C LG  +  P+   + NF
Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556


>gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23]
 gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23]
          Length = 635

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
            G++   D +L K    +I+ +K SGLRGRGG GF TG+KW F  K  SD   Y+V NAD
Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR IM  +PH+++E   +  ++IG+    +Y+R E+      L+ A+++   
Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294

Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            GLLG +  LG D   DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G
Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N    +E  M  T  
Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVM
Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 471

Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           D   D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G   ++++D L  + 
Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408
           + I+   +C LG  +  P+   + NF
Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556


>gi|303248403|ref|ZP_07334663.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302490201|gb|EFL50119.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 454

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/385 (37%), Positives = 220/385 (57%), Gaps = 9/385 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ V AS LRGRGGAGF  G KW  +P      P Y+VVN DE EPGT KDR ++  +P
Sbjct: 45  VLDIVLASDLRGRGGAGFPAGRKWQGIPAGYVG-PRYVVVNTDEMEPGTFKDRVLVNVDP 103

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--D 160
           H +IEG ++ ++A+ A     ++R  +  +   L+         GLLG N  LG D   D
Sbjct: 104 HLVIEGILLCAYAVSATLGVCFIRPSYEADAVLLERETQVARDKGLLGKNI-LGTDFSFD 162

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I VH  AG YICGE +A ++++ G +  PR   P  +  GL+ CPT VNN+E++A +P I
Sbjct: 163 IHVHRSAGRYICGEASAQIKAISGLRPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGI 222

Query: 221 LRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           ++ G  W+    R     GTKLFS+SG +  P   E  M I   E++ +H GG+  G   
Sbjct: 223 VKNGPDWFKSLARTPTGAGTKLFSVSGRIAKPDCYELPMGIPLREILFEHAGGMPPG-RA 281

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           + AVIPGG+S P +P  ++    MD+D +K+ G  LGTA+++V D++T ++ A   L  F
Sbjct: 282 IKAVIPGGASTPFMPE-RLLDLPMDFDAMKKAGQRLGTASIMVFDQNTCLVGATLNLIEF 340

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           +  ESCG CTPCREG  ++  ++  +  G  ++  I ++ +++K ++    CA    AA 
Sbjct: 341 FTRESCGWCTPCREGLPYVRHLLRLIESGEGKEEHIGMIRDMAKVMQS-AYCAFAPGAAE 399

Query: 400 PIQGLIKNFRPLIEERIDQYHRCNF 424
           PI  L+ +F   + E + Q  +C F
Sbjct: 400 PILSLLTHFEAEVREHLHQ-RKCPF 423


>gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium
           enrichment culture clone BF]
          Length = 597

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/415 (36%), Positives = 236/415 (56%), Gaps = 6/415 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD-WIINEVKASGLRGRGGAGFST 62
           Q R+   N   +  + + + ++R  ++ + K+L       +I ++K +GLRGRGG GF T
Sbjct: 115 QQRVALRNCGHINPEYIQEYIARDGYEALAKVLTTMTPAQVIEDMKIAGLRGRGGGGFPT 174

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW F  K    +  Y++ NADE +PG   DR ++  +PH+++EG +IA++AIGA   +
Sbjct: 175 GLKWDFASKSPGPK-KYIICNADEGDPGAFMDRSVLEGDPHSVLEGMMIAAYAIGADEGY 233

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    + L+ A+ +    GLLG N    G++  + +  GAGA++CGEETAL+ S
Sbjct: 234 IYVRAEYPLAIKRLKVAIAQAEELGLLGENIMGSGFNCTLHIKEGAGAFVCGEETALMAS 293

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG +G P  +PPFPA  GL+  P+ +NNVE+ A VP I   GA  Y+  G E ++GTK+
Sbjct: 294 IEGSRGMPNPRPPFPAVKGLWEKPSNINNVETFANVPVIYLNGAEKYASVGTEKSKGTKV 353

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G V      E  M IT  E+I    GGI        AV  GG S  C+P   +   
Sbjct: 354 FALTGKVRNTGLAEVPMGITLREIIFDIGGGIMDD-KKFKAVQIGGPSGGCIPEQHLDTP 412

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           + DYD L  +G+ +G+  ++VMD ++ ++        F + ESCG+C PCREGT  M+ +
Sbjct: 413 V-DYDSLIALGAMMGSGGLVVMDETSCMVDVARFFLNFTQKESCGKCIPCREGTMRMLEI 471

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +E++  G     +I  L  +   I+   +CALG +A  PI   ++ FR   E  I
Sbjct: 472 LEKICAGKGVPEDITTLETLGAAIKNTALCALGQSAPNPILSTLRYFRHEYEAHI 526


>gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 635

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
            G++   D +L K    +I+ +K SGLRGRGG GF TG+KW F  K  SD   Y+V NAD
Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR IM  +PH+++E   +  ++IG+    +Y+R E+      L+ A+++   
Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294

Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            GLLG +  LG D   DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G
Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N    +E  M  T  
Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVM
Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 471

Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           D   D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G   ++++D L  + 
Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408
           + I+   +C LG  +  P+   + NF
Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556


>gi|116050628|ref|YP_790553.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585849|gb|ABJ11864.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 449

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 154/391 (39%), Positives = 218/391 (55%), Gaps = 11/391 (2%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + +  +D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++    +L  A+DE  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG++G PT VNNVE+
Sbjct: 170 GSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVET 229

Query: 214 IAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  VP I+  G  WY    R    + GTKL   SG V  P   E    ++  EL E + G
Sbjct: 230 LCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNPGLWELPFGVSARELFEDYAG 289

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD--- 328
           G+R G+  L A  PGG+    L    +  A M   G+ ++G+ +GT       R      
Sbjct: 290 GMRDGF-QLKAWQPGGAGTGFLLPEHLD-AQMFAGGIAKVGTRMGTGLAHGGGRQHQHGF 347

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EG 387
              A W+ S      +     PCR+G  W ++++  L +G  Q  +++ L ++   +  G
Sbjct: 348 PCCATWKSSSPASPAA--GAPPCRDGLPWSVKLLRALERGEGQPGDLETLKQLVNFLGPG 405

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +T CA    A  P+   +K FR   E  I +
Sbjct: 406 KTFCAHAPGAVEPLGSALKYFRAEFEAGISR 436


>gi|269837267|ref|YP_003319495.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745]
 gi|269786530|gb|ACZ38673.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745]
          Length = 575

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 151/425 (35%), Positives = 228/425 (53%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDN-VDKILEKGRDWIINEVKASGLRGRGGA 58
            L  Q R+    +G+   +S+ D ++RG +   +  I +   + ++NEVK S +RGRGGA
Sbjct: 136 FLAGQRRVLMADWGIIDPESIEDYIARGGYQAWIKAIFDMTPEEVVNEVKISNVRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G+KW    +     P Y++ N+ E EP   KDR ++   PH ++EG +I  +A+  
Sbjct: 196 GFPAGIKWE-SGRRTQAWPKYVIANSHEGEPNVFKDRRLIESNPHLVLEGIMIGCYALET 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + YV GE     E  + AVD+ Y  GLLG N    G    I V  G GAYICGE +A
Sbjct: 255 PHGYNYVGGEHKLAIERFRKAVDQAYELGLLGDNVLGSGVSCHIRVRTGGGAYICGEGSA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+ G++GQPR KPP     G++  PT +NN E+ A +P I+R G +WY+  G E + 
Sbjct: 315 LMYSVMGQRGQPRTKPPRSVEEGVWKRPTVLNNTETFANIPGIIRNGGAWYAAMGTEKST 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL ++ G V     VE  M +   E+I    GG+R G+     V  GG S   L   Q
Sbjct: 375 GTKLITMQGPVQRIGVVEIEMGMPMREVIFGLFGGMREGY-VFKGVQTGGVSAGPLREDQ 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   + D+D L  +G  LG+   +V D+S   +     L  F ++ESC +C PCR G   
Sbjct: 434 LDVPV-DFDSLTPLGGMLGSGGFVVFDQSVCAVDFARYLQEFNRYESCAKCVPCRLGNPA 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ER+  G A++ ++ L+ E S+ I   ++C LG  A  P  G+I+ F       I+
Sbjct: 493 LVEIIERIRLGQARQGDLALIEETSRPIIDLSLCGLGQVAPMPTLGMIRAFPEDFAAHIE 552

Query: 418 QYHRC 422
           + HRC
Sbjct: 553 E-HRC 556


>gi|319794267|ref|YP_004155907.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Variovorax paradoxus EPS]
 gi|315596730|gb|ADU37796.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus EPS]
          Length = 595

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 212/368 (57%), Gaps = 17/368 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D ++  +  SGLRG GGAGF  G KW  + +  +  P  + VN DE EPGT KDR  +  
Sbjct: 240 DDVLKTMTDSGLRGLGGAGFPAGRKWGIVRQQLA--PRLMAVNIDEGEPGTFKDRTYLER 297

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           +PH  ++G +IA+  +G    ++Y+R E+   R  L+  +       LL +N        
Sbjct: 298 DPHRFLDGLLIAATVVGIDACYVYLRDEYHGCRAILEREL------ALLQANPPCALP-R 350

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A +GL+G PT  +N E++  V  I
Sbjct: 351 IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQIGLFGRPTLEHNFETLYWVRDI 410

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + RGA+W+S FGR    G + FS+SG V  P        IT  EL+++ CGG+  G D L
Sbjct: 411 VERGAAWFSDFGRNGRHGLRSFSVSGRVREPGVKLAPAGITLRELVDEFCGGMLPGHD-L 469

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            A +PGG+S   LPA  M    +D+D L+  G  +G+AAVIV+ +      A   +  F+
Sbjct: 470 YAYLPGGASGGILPA-SMSDIPLDFDTLQPHGCFIGSAAVIVLSQKDRARDAALNMMHFF 528

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           +HESCGQCTPCR GTG   R+M           +   L ++++ +   +IC LG AA  P
Sbjct: 529 EHESCGQCTPCRVGTGKAARLMAE------PHWDHATLEDLNQVMVDASICGLGQAAPNP 582

Query: 401 IQGLIKNF 408
           ++ + K F
Sbjct: 583 VRCVQKYF 590


>gi|91788666|ref|YP_549618.1| NADH dehydrogenase (quinone) [Polaromonas sp. JS666]
 gi|91697891|gb|ABE44720.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Polaromonas sp. JS666]
          Length = 566

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 145/366 (39%), Positives = 211/366 (57%), Gaps = 16/366 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  ++ SGLRG GGAGF  G KW  +       P  + VN DE EPGT KDR  +  +P
Sbjct: 212 VLKTMEDSGLRGLGGAGFPAGRKWRIVRAEAG--PRLMAVNIDEGEPGTFKDRVYLERDP 269

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H  +EG +IA++A+G    +IY+R E+   R  L+  +D+   +  +    +      I 
Sbjct: 270 HRFLEGMLIAAWAVGIEKIYIYLRDEYHGCRAMLETELDKLRLAPPMAGMPQ------IE 323

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT  +N E++  V  IL 
Sbjct: 324 LRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLFWVREILE 383

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
           +G +W++  GR   +G + FS+SG V  P        IT  ELI++HCGG++ G     A
Sbjct: 384 KGGAWFTSHGRNGRKGLRSFSVSGRVKSPGVKLAPAGITIQELIDEHCGGMQDG-HTFYA 442

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
            +PGG+S   LPA  M    +D+D L+  G  +G+AAVIV+        A   +  F+ H
Sbjct: 443 YLPGGASGGILPA-TMNSIPLDFDTLQPYGCFIGSAAVIVLSDQDTATNAARNMMRFFHH 501

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ESCGQCTPCR GT     +ME+       K ++ LL ++S  +   +IC LG AA  P+ 
Sbjct: 502 ESCGQCTPCRVGTAKAAHLMEK------PKWDLALLADLSLVMRDASICGLGQAAPNPMD 555

Query: 403 GLIKNF 408
            ++K F
Sbjct: 556 CVVKYF 561


>gi|330508800|ref|YP_004385228.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta
           concilii GP-6]
 gi|328929608|gb|AEB69410.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta
           concilii GP-6]
          Length = 628

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 150/404 (37%), Positives = 230/404 (56%), Gaps = 5/404 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +++ D ++ G +  + + L E   + +I EVK S LRGRGG GF TG KW
Sbjct: 139 LIKNNIKINPRNIEDYIALGGYSALARALSEMTPEEVIEEVKRSNLRGRGGGGFPTGRKW 198

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               +     P Y++VN DE +PG   DR +M   PH+++EG +IA++A+G+H  FIYVR
Sbjct: 199 KST-REAPGEPKYVIVNCDEGDPGAFMDRALMEGNPHSVLEGLIIAAYAMGSHKGFIYVR 257

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    ++   A+ +    GLLG N    G+D D+ +H GAG+++ GE TAL+ +LEG 
Sbjct: 258 MEYPLAVQNATLALQQAREYGLLGENILGTGFDFDVSIHRGAGSFVSGESTALMNALEGW 317

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PR K    +  GL+G P+ +NNVE+ A VP I+  GA W++  G E ++GTK+FS+ 
Sbjct: 318 VGEPRPKYVHTSQKGLWGRPSALNNVETFANVPLIIEHGAKWFNSIGTERSKGTKIFSLV 377

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    VE  M +T  ++I K  GGI G    L  V  GG S   +PA  +   + D+
Sbjct: 378 GKVNNTGLVEVPMGMTLADIIYKIGGGIPGN-KKLKGVQTGGPSGGIIPARYLNTPV-DF 435

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L  +GS +G+ ++IV+D  T  +        F   ESCG+C PCREG   M  +++ +
Sbjct: 436 DELTSLGSMMGSGSIIVIDEDTCAVDLARYFVDFLCSESCGKCLPCREGLKRMREILDAI 495

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             G   + +I  L E+++ +   ++CALG  A  P+   I+ FR
Sbjct: 496 ESGRGTETDIQTLQEIAELMRTASLCALGRTAVNPVLSTIRYFR 539


>gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 595

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 223/387 (57%), Gaps = 6/387 (1%)

Query: 25  SRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           +RG ++ + K+L E   D +I  +  SGLRGRGG GF TG+KW       +D+  Y+  N
Sbjct: 135 TRG-YEALGKVLTEMTPDDVIQVLLDSGLRGRGGGGFPTGLKWKLAKGNDADQ-KYVCCN 192

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADE +PG   DR ++  +PH ++E   IA +AIGA   +IYVR E+      L+ A+ + 
Sbjct: 193 ADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGATQGYIYVRAEYPIAVARLEIAIKQA 252

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
              GLLG+N     +  D+ +  GAGA++CGEETAL+ S+EG +G+PR +PPFPA  GL+
Sbjct: 253 REYGLLGNNIFGTDFSFDVGLRLGAGAFVCGEETALMTSIEGNRGEPRPRPPFPAQKGLF 312

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
             PT +NNVE+ A +P I+  G+ W++  G E ++GTK+F++ G +     VE  M  T 
Sbjct: 313 QKPTILNNVETYANIPQIILNGSEWFASMGTEKSKGTKVFALGGKIKNTGLVEIPMGTTL 372

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            E++E+  GGI  G     A   GG S  C+P       I DYD L  +GS +G+  +IV
Sbjct: 373 REVVEQIGGGIPNG-KKFKAAQTGGPSGGCIPVEHFDIPI-DYDNLISIGSMMGSGGLIV 430

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           MD    ++        F   ESCG+CTPCR GT  M+ ++E++ KG     ++D L E+ 
Sbjct: 431 MDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTKRMLEILEKITKGNGTLEDLDKLEELC 490

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409
             I+  ++C LG  A  P+   ++ FR
Sbjct: 491 YYIKDNSLCGLGQTAPNPVLSTLRYFR 517


>gi|294646919|ref|ZP_06724540.1| protein HymB [Bacteroides ovatus SD CC 2a]
 gi|292637864|gb|EFF56261.1| protein HymB [Bacteroides ovatus SD CC 2a]
          Length = 489

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 229/386 (59%), Gaps = 8/386 (2%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
            G++   D +L K    +I+ +K SGLRGRGG GF TG+KW F  K  SD   Y+V NAD
Sbjct: 30  EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 88

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR IM  +PH+++E   +  ++IG+    +Y+R E+      L+ A+++   
Sbjct: 89  EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 148

Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            GLLG +  LG D   DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G
Sbjct: 149 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 207

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N    +E  M  T  
Sbjct: 208 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 267

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVM
Sbjct: 268 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 325

Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           D   D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G   ++++D L  + 
Sbjct: 326 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 384

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408
           + I+   +C LG  +  P+   + NF
Sbjct: 385 QVIKDTALCGLGQTSPNPVLSTLDNF 410


>gi|260886836|ref|ZP_05898099.1| protein HymB [Selenomonas sputigena ATCC 35185]
 gi|330839360|ref|YP_004413940.1| NADH dehydrogenase (quinone) [Selenomonas sputigena ATCC 35185]
 gi|260863435|gb|EEX77935.1| protein HymB [Selenomonas sputigena ATCC 35185]
 gi|329747124|gb|AEC00481.1| NADH dehydrogenase (quinone) [Selenomonas sputigena ATCC 35185]
          Length = 416

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/400 (34%), Positives = 220/400 (55%), Gaps = 5/400 (1%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           N +     S+   ++ G ++ + K +    + I + +  + ++GRGGA +  G KWS   
Sbjct: 10  NFHRYDPMSIESYLAIGGFNALKKTVTMDGEDIASLLSEAQIKGRGGAAYPMGRKWS-QA 68

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           +        ++ NADE EP T KDR+++ ++P  LIE   I +++I A   +IY+R E+ 
Sbjct: 69  RAVKGEHKVIICNADEGEPCTFKDRELITNDPFNLIEAMTIGAWSIRAQDGYIYLREEYA 128

Query: 131 RERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
             R  L+ A++E    G LG N   K G+D  I +  GAGAY+CGE TAL+ S+EGK G+
Sbjct: 129 HLRSRLKNAIEEAERCGFLGKNILGKEGFDFHIHLRSGAGAYVCGEGTALIRSIEGKAGR 188

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR+KPPF    GL+  PT VNNVES+++VP +L      Y  +G   + GTKL S+ G+V
Sbjct: 189 PRMKPPFIKQSGLFALPTCVNNVESLSIVPHLLLDDKKEYISYGSGESLGTKLVSVGGNV 248

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
           N P   E     T  E+I    GGI+GG    + +I  G +   +    +      YD L
Sbjct: 249 NCPAVFEIPFGTTVREIIYDLAGGIQGG--RRIRLIQFGGASGKIADESILDVPYTYDDL 306

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
           K  G  +G+ A++V+D  T ++  +     F+ HESCGQCTPCREG   +  ++E+  +G
Sbjct: 307 KAAGVTVGSGAILVVDERTSVLDFLRMTQAFFSHESCGQCTPCREGVLHIKLILEKFAQG 366

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            A +++++ +  +++ +    +C LG++A   +    K F
Sbjct: 367 TATEKDLENMKMIARIMPMSALCGLGESAENALSAAFKLF 406


>gi|319760612|ref|YP_004124550.1| NADH-quinone oxidoreductase subunit F [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039326|gb|ADV33876.1| NADH-quinone oxidoreductase subunit F [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 444

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 144/357 (40%), Positives = 203/357 (56%), Gaps = 7/357 (1%)

Query: 65  KWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           KWS M K  S  + +YL+ NADE EPGT KDR +M   PH L+EG +IA +A+    A+I
Sbjct: 73  KWSMMIKHQSILKVNYLICNADEMEPGTYKDRLLMERLPHLLLEGILIAGYALSVSVAYI 132

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           ++R E++   + L  A+ E  ++GLLG N     + +DI +H GAG YICGEETAL+ +L
Sbjct: 133 FLRYEYMIAAKYLNFAISELRSAGLLGKNILNTEFSLDIFLHTGAGRYICGEETALINAL 192

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTK 240
           EGK+  PR KPPFPA  GL+G PT +NNVE++  +P I+  G SWY     +  N+ GTK
Sbjct: 193 EGKRAVPRSKPPFPAQSGLWGKPTCINNVETLCNIPGIIEYGVSWYKNLSNKYSNDSGTK 252

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L   SG V  P   E    IT  E++E +  G+  G   L A  PGG+S   L    +  
Sbjct: 253 LMGFSGRVKNPGVWELPFGITAREILEDYARGMCDGL-YLKAWQPGGASTDFLIPNHLDT 311

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+  +  +GS  GT   I +D + ++I  +  L  F+  ESCG CTPCREG  W+++
Sbjct: 312 P-MDFHSISIIGSRFGTGMAIAIDNTVNMISLMRNLEEFFARESCGWCTPCREGLPWIVK 370

Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++  L K      +I++L  +   +  G+T CA    A  P+Q  +K FR   E  I
Sbjct: 371 LLISLEKNNGDPGDIEILEHLCNLLGPGKTFCAHAPGAIEPLQSALKYFRSEFEAGI 427


>gi|301060589|ref|ZP_07201424.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
 gi|300445292|gb|EFK09222.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
          Length = 584

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 147/416 (35%), Positives = 232/416 (55%), Gaps = 4/416 (0%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N   +  +SL D ++   +  +   L    + +IN +K +GLRGRGGAGF TGMKW 
Sbjct: 108 VLANCGEIDPESLDDYLAHKGYIALQNALAMSPEDVINTMKTAGLRGRGGAGFPTGMKWD 167

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F  +   D+  Y+V NADE +PG   DR ++  +PH +IEG +IA +AIGA   +IY R 
Sbjct: 168 FCRQAEGDQ-KYIVCNADEGDPGAFMDRSVLEGDPHAVIEGMIIAGYAIGATEGYIYCRA 226

Query: 128 EFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    + L  A+ +    G LG N +   +   + +  GAGA++CGEETALL S+EG++
Sbjct: 227 EYPIAIKRLTKAIAQTEERGYLGKNIQGSDHSFHLTIKQGAGAFVCGEETALLASIEGRR 286

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G P+++PPFPA  GL+G PTT+NNVE++A V  +  +GA W++  G E ++GTK+F+++G
Sbjct: 287 GMPKIRPPFPAQKGLWGKPTTINNVETLANVRHVFEKGADWFASIGTEKSKGTKVFALAG 346

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            +     VE  M +T  +L+    GG+         +  GG S  CLP   +   I DY+
Sbjct: 347 KIKNTGLVEVPMGMTIRDLVFGPGGGMLRKKAKFKGIQLGGPSGGCLPESLLDTPI-DYE 405

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + G+ +G+  ++VMD  T ++        F  +ESCG+C PCR G    + V++ + 
Sbjct: 406 SINKTGAIMGSGGMVVMDTRTCMVDVARFFLDFTVNESCGKCVPCRVGLKRTLEVLDEIT 465

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            G   +  +  L E+   I+   +C LG+ A  P+   ++ F    E  I + H C
Sbjct: 466 AGRGTEEHLTFLQEMGITIKNTALCGLGNTAPNPVLTTMRYFPQEYEAHI-RDHVC 520


>gi|296159983|ref|ZP_06842803.1| NADH dehydrogenase (quinone) [Burkholderia sp. Ch1-1]
 gi|295889729|gb|EFG69527.1| NADH dehydrogenase (quinone) [Burkholderia sp. Ch1-1]
          Length = 521

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 220/393 (55%), Gaps = 7/393 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + + + L+   D     +  SGLRGRGGA F  G+KW  + +       
Sbjct: 116 SIDDYIAHGGLEGLRQALQTDGDAACEALIESGLRGRGGAAFPAGIKWRTV-RGAKAAQK 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA    IYVR E+     +L+A
Sbjct: 175 YIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATVGHIYVRSEYPHSIATLEA 234

Query: 139 AVDECYASGLLGSNSKLG---YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A+ +  A+G LG +S LG   +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP 
Sbjct: 235 AITKARAAGWLG-DSVLGSTAHRFELFVAKGAGAYVCGEETALLESLEGKRGIVRAKPPV 293

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA VGL+G PT +NNV ++A VP I  RGA++Y  FG   +RGT  F ++G+V     VE
Sbjct: 294 PALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGTLPFQLAGNVKQGGLVE 353

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
            +  +T  EL+  + GG   G     AV  GG     LP  Q     MDY+    +G+ +
Sbjct: 354 LAFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVV 411

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G   ++V D ++++ +       F   ESCG+CTPCR G+   + V+ R+  G    R++
Sbjct: 412 GHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGVEVIGRIRNGDTSTRQV 471

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            LL ++   +   ++CA+G    +P+   + +F
Sbjct: 472 QLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHF 504


>gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191]
 gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191]
          Length = 620

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 154/423 (36%), Positives = 239/423 (56%), Gaps = 14/423 (3%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI     G +  + +++ +S G +  + K L E   +  I E+K SGLRGRGG GF T
Sbjct: 138 QHRILLKDCGKINPEDINEYISHGGYSALAKCLNELKEEGTIEEIKKSGLRGRGGGGFPT 197

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW F  +    +  Y++ N DE +PG   DR ++   PH +IEG +I  FA GA    
Sbjct: 198 GLKWQFT-RASKGKQKYMICNGDEGDPGAYMDRSLLEGNPHAVIEGMIIGGFATGASKGL 256

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179
            Y+R E+      +QAA+D  Y +GLLG N   SK  YD++I   +GAGA++CGEETAL+
Sbjct: 257 FYIRAEYPLAISRVQAAIDAAYKAGLLGKNILGSKFSYDLEI--RYGAGAFVCGEETALM 314

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG++G P  KPPFP+  GL+GCPT++NNVE++A +P I+  G+ W+S  G   + GT
Sbjct: 315 RSIEGQRGTPTPKPPFPSVKGLWGCPTSINNVETLANIPLIIYNGSEWFSKIGSGKSTGT 374

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN--LLAVIPGGSSVPCLPAGQ 297
           K+F+++G V     +E  M IT  E++        G +D   + AV  GG S   +PA +
Sbjct: 375 KVFAMTGKVKSSGLIEVPMGITIKEVVFDIG---EGAYDGRVIKAVQTGGPSGGVIPAEK 431

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               I  Y+ L E GS +G+  +IVMD S  ++        F   ESCG+C PCR G   
Sbjct: 432 FDMPIT-YESLIEAGSMMGSGGLIVMDNSDCMVDIAKFYLEFCVEESCGKCVPCRIGGYQ 490

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++++++ + +G       + +  ++  ++  ++CALG  A  P+   +K+F    +E + 
Sbjct: 491 LLKILKDISEGKEVGDYKEKIGNLALTMQKASLCALGQTAPNPVLSCLKSFGHEFDEHVK 550

Query: 418 QYH 420
           + H
Sbjct: 551 EKH 553


>gi|154505522|ref|ZP_02042260.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
 gi|153794180|gb|EDN76600.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
          Length = 633

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 158/423 (37%), Positives = 241/423 (56%), Gaps = 11/423 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + + + ++ G +  ++K+L E     +I E+  S LRGRGG GF TG KW
Sbjct: 154 VLKNCGHIDSEHIQEYIAAGGYRALEKVLFEMTPAQVIEEISESNLRGRGGGGFPTGYKW 213

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S + +   ++  Y+V N DE +PG   DR IM  +PH +IEG +I ++A+GA   +IYVR
Sbjct: 214 SQVARQ-PEKVRYIVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIGAYAVGARDGYIYVR 272

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184
            E+      L+ A+ +    GLLG +  LG D    +H   GAGA++CGE +AL  S+EG
Sbjct: 273 AEYPLAISRLKLAISQAEECGLLG-DLILGTDFSFHLHINRGAGAFVCGEGSALTASIEG 331

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
            +G PR+KPP     GL+  PT +NNVE+ A VP I+  GA W+   G EN+ GTK F++
Sbjct: 332 SRGMPRVKPPRTVEKGLFAKPTVLNNVETFANVPMIINEGAGWFKSIGPENSPGTKAFAL 391

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V +   +E  M  +  E+I    GGI+       AV  GG S  CL    +    +D
Sbjct: 392 TGSVKHTGLIEVPMGTSLREVIYDIGGGIKEDG-KFKAVQIGGPSGGCLVTRHL-DVNLD 449

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D LK+MG+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  M+ ++ER
Sbjct: 450 FDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 509

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQY---H 420
           +V G  +  ++DLL E++  I    +C LG +AA P+   +K FR   +E  +D+    H
Sbjct: 510 IVAGNGKLEDLDLLEELANMITETALCGLGKSAALPVVSTLKLFRDEYVEHVVDKKCVSH 569

Query: 421 RCN 423
            C 
Sbjct: 570 TCT 572


>gi|297539618|ref|YP_003675387.1| NADH dehydrogenase (quinone) [Methylotenera sp. 301]
 gi|297258965|gb|ADI30810.1| NADH dehydrogenase (quinone) [Methylotenera sp. 301]
          Length = 513

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 146/391 (37%), Positives = 218/391 (55%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D ++   +  + K L      I+  V  SGLRGRGGA F TG+KW+ +    +D+  
Sbjct: 118 SLDDYIAHDGYKGLKKALTLSGAEIVKAVTDSGLRGRGGAAFPTGIKWNTVLGCQADQ-K 176

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA   +IY+R E+    ++L  
Sbjct: 177 YIVCNADEGDSGTFSDRMIMEDDPFVLIEGMTIAGVAVGATQGYIYLRSEYPHALKALNE 236

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ +  A+G LG       +  ++ V   AGAY+CGEET+LLESLEGK+G  R KPP PA
Sbjct: 237 AIAKAEAAGYLGDKICGSTHTFNLEVRRAAGAYVCGEETSLLESLEGKRGLVRFKPPLPA 296

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNV S+A VP IL +GA +Y+ +G   +RGT    ++G++ +   VE +
Sbjct: 297 IEGLFGKPTVVNNVISLATVPIILDKGAQYYADYGMGRSRGTLPIQLAGNLKHGGLVELA 356

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  EL+  + GG   G   + AV  GG     LP  Q     +DY+    + + +G 
Sbjct: 357 FGITLRELLYDYGGGSATG-KPIRAVQVGGPLGAFLPESQFD-TPLDYEAFSNIWAVVGH 414

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++  D + D+ K       F   ESCG+CTPCR G+   + V+++++ G    + I L
Sbjct: 415 GGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGVEVIDKIIAGKDTAKNIKL 474

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++S  +   ++CALG    +P+   + +F
Sbjct: 475 VRDLSDTMLNGSLCALGGMTPYPVLSAMNHF 505


>gi|288959751|ref|YP_003450091.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510]
 gi|288912059|dbj|BAI73547.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510]
          Length = 526

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 148/393 (37%), Positives = 220/393 (55%), Gaps = 8/393 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D  + G +  ++  L   +  I+  V  SGLRGRGGAGF TG+KW+ + +  +D   
Sbjct: 120 SVEDYRAHGGFRGLENALAMSQAEIVKVVTDSGLRGRGGAGFPTGIKWNTVMQAKADE-K 178

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           ++  NADE + GT  DR I+  +P  LIEG  IA+ A+GA   ++Y+R E+     +L+ 
Sbjct: 179 FVCCNADEGDSGTFADRMIIEGDPFCLIEGMTIAAIAVGATSGYVYMRSEYPHATATLRH 238

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A+   Y  G LG N   +   + +D+ V  GAGAYICGEETA+LESLEGK+G  R KPP 
Sbjct: 239 AIKLAYDEGWLGDNIHGTSRTFHLDVRV--GAGAYICGEETAMLESLEGKRGMVRAKPPL 296

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT VNNV S+  VP IL RGA +Y  FG   +RGT  F ++G++ +   VE
Sbjct: 297 PALEGLFGKPTVVNNVLSLCSVPIILDRGAEYYRDFGVGRSRGTLPFQLAGNLKHGGIVE 356

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
           ++  IT  EL+    GG   G   + AV  GG     LP  Q      DY+      + +
Sbjct: 357 KAFGITLHELLYDFGGGTITGRP-IRAVQVGGPLGAYLPPSQFD-LPKDYEAFAAQEAMV 414

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G   ++V D S D+ +       F   ESCG+CTPCR G+   M  +++++ G      +
Sbjct: 415 GHGGIVVFDDSVDMARQARFAMEFCVAESCGKCTPCRIGSTRGMETLDKIIAGRNVDANL 474

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +LL ++   +   ++CA+G    +P++  +K+F
Sbjct: 475 ELLADLCDVMVDGSLCAMGGMTPYPVRSAVKHF 507


>gi|302871901|ref|YP_003840537.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574760|gb|ADL42551.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 598

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 157/411 (38%), Positives = 243/411 (59%), Gaps = 8/411 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG GF TG+KW F  K  
Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+   ++YVR E+    
Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244

Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
           + L+ A+++    GLLG N  LG  ++ DI +  GAGA++CGEETAL+ S+EG +G+PR 
Sbjct: 245 KRLEIAINQAREYGLLGKNI-LGTDFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++GTK+F++ G VN  
Sbjct: 304 RPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M  T  E++E   GG   G     AV  GG S  C+PA  M   I D+D L  +
Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTAL 421

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  M+ +++++  G   
Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGT 481

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + +  RC
Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531


>gi|71892262|ref|YP_277996.1| NADH dehydrogenase I chain F [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796368|gb|AAZ41119.1| NADH dehydrogenase I chain F [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 443

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 156/391 (39%), Positives = 230/391 (58%), Gaps = 6/391 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           I +   + II  V+ SGLRGRGG GF TG+KWS M +  S    YLV NADE EPGT KD
Sbjct: 43  ITQMSPEEIIELVRNSGLRGRGGGGFFTGIKWSMMSQSKSVCSRYLVCNADEMEPGTYKD 102

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I+S+A+GA  A+I++R E+I   + L  A+ E  + GL+G N  
Sbjct: 103 RFLMERLPHLLLEGILISSYALGASRAYIFLRYEYIIVAKYLTRAIAEIKSIGLIGKNIL 162

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              ++ ++ +H GAG YICGEETAL+ +LEG++  PR KPPFP++VGL+G PT VNNVE+
Sbjct: 163 NSEFNFELFLHTGAGRYICGEETALINALEGRRAVPRAKPPFPSHVGLWGKPTCVNNVET 222

Query: 214 IAVVPTILRRGASWYSGFG--RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  +P I+  G +WY      + N+ GTKL   SG V  P   E     T  E++E +  
Sbjct: 223 LCNIPGIIEHGTTWYRNISSKKSNDSGTKLMGFSGRVKNPGVWELPFGTTAREILEDYSR 282

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+  G+ +L A  PGG S   L    +    MD+D +   GS  GT   I +D + +++ 
Sbjct: 283 GMCPGF-SLKAWQPGGVSTDFLTTDHLDTP-MDFDKIAISGSRFGTGMAIAIDNTVNMVS 340

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTI 390
            +  L  F+  ESCG CTPCR+G  W+++++  L     +  +I+LL ++   +  GRT 
Sbjct: 341 LVRNLEEFFSRESCGWCTPCRDGLPWIVKLLISLENKDGRPGDIELLEKLCCVLGPGRTF 400

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           CA    A  P++  +K F+   E  I ++++
Sbjct: 401 CAHAPGAIEPLKSALKYFKNEFELGIHEFYK 431


>gi|312876005|ref|ZP_07735994.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311797203|gb|EFR13543.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 598

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 157/411 (38%), Positives = 243/411 (59%), Gaps = 8/411 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG GF TG+KW F  K  
Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+   ++YVR E+    
Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244

Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
           + L+ A+++    GLLG N  LG  ++ DI +  GAGA++CGEETAL+ S+EG +G+PR 
Sbjct: 245 KRLEIAIEQARQYGLLGKNI-LGTDFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++GTK+F++ G VN  
Sbjct: 304 RPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M  T  E++E   GG   G     AV  GG S  C+PA  M   I D+D L  +
Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTAL 421

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  M+ +++++  G   
Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGT 481

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + +  RC
Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531


>gi|312793480|ref|YP_004026403.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180620|gb|ADQ40790.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 598

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 157/411 (38%), Positives = 243/411 (59%), Gaps = 8/411 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG GF TG+KW F  K  
Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+   ++YVR E+    
Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244

Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
           + L+ A+++    GLLG N  LG  ++ DI +  GAGA++CGEETAL+ S+EG +G+PR 
Sbjct: 245 KRLEIAIEQARQYGLLGKNI-LGTDFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++GTK+F++ G VN  
Sbjct: 304 RPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M  T  E++E   GG   G     AV  GG S  C+PA  M   I D+D L  +
Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTAL 421

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  M+ +++++  G   
Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGT 481

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + +  RC
Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531


>gi|91775074|ref|YP_544830.1| NADH dehydrogenase (quinone) [Methylobacillus flagellatus KT]
 gi|91709061|gb|ABE48989.1| formate dehydrogenase beta subunit [Methylobacillus flagellatus KT]
          Length = 516

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 218/392 (55%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D ++   +  +   ++     I+ +V  SGLRGRGGA F TG+KW  + +  +++  
Sbjct: 116 SLQDYLAHDGYKGLRNAIDMAPQDIVQQVTDSGLRGRGGAAFPTGIKWKTVLEAPAEQ-K 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA   +IYVR E+     +L  
Sbjct: 175 YVVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGIAVGATQGYIYVRSEYPHSIAALNL 234

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+   Y +G LG    LG  +D  + V   AGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 235 AIKSAYEAGYLG-RGILGSRHDFYLEVRRAAGAYVCGEETALLESLEGKRGLVRFKPPLP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNV S+A VP IL +G+ +Y  +G   +RGT    ++G++ +   VE+
Sbjct: 294 AISGLFGKPTVINNVISLASVPIILDKGSVYYRDYGMGRSRGTLPIQLAGNIKHGGLVEK 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+  + GG   G   + AV  GG     LP  Q     +DY+   ++ + LG
Sbjct: 354 AFGVTLRELLYDYGGGSASG-RPIKAVQVGGPLGAYLPESQFD-TPLDYEEFGKLWAVLG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              ++  D + D+         F   ESCG+CTPCR G+   + VM++++ G    + I 
Sbjct: 412 HGGIVAFDDTVDMAHMARYAFEFCAVESCGKCTPCRIGSTRGVEVMDKIIAGTDPAKHIA 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L+ ++   +   ++CALG    +P+   + +F
Sbjct: 472 LVRDLGDTMLNGSLCALGGMTPYPVLSALNHF 503


>gi|85857933|ref|YP_460135.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85721024|gb|ABC75967.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 637

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 155/394 (39%), Positives = 232/394 (58%), Gaps = 5/394 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +++ + ++RG +  + K L     + +I EVK SGLRGRGG GF TG KW    +     
Sbjct: 169 ENMDEYIARGGYTALHKALTTMSPEDVILEVKTSGLRGRGGGGFPTGTKWESCRRA-EGE 227

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ N DE +PG   DR +M  +PH+++EG +I ++AIGAH  +IYVR E+     +L
Sbjct: 228 IKYVICNGDEGDPGAYMDRSLMEGDPHSVLEGMIIGAYAIGAHEGYIYVRNEYPLAVANL 287

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q A+ +   +GLLG N    G++ DI +  GAGA++CGE TAL+ SLEGK G+PR K   
Sbjct: 288 QHAIGQAREAGLLGKNILGTGFEFDIKIAKGAGAFVCGESTALMASLEGKAGEPRAKYIH 347

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
               GL+  P+ +NNVE+ A VP I+ RG  W+SG G +++ GTK+FS+ G +N    VE
Sbjct: 348 TVEQGLWNRPSNLNNVETWANVPVIIARGGQWFSGIGVKHSTGTKVFSLVGKINNIGLVE 407

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M I   ++I +  GGI GG     AV  GG S  C+P   M    +D+D L E GS +
Sbjct: 408 VPMGIPLKDIIYEIGGGIPGG-RKFKAVQTGGPSGGCIP-DTMIDLPVDFDSLWEAGSMM 465

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD  T ++        F   ESCG+C PCREG   M  +++ +  G  ++ ++
Sbjct: 466 GSGGMIVMDDKTCMVDIARYFIEFLVSESCGKCVPCREGIYRMNEILQDICAGKGRRGDL 525

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +LL  +++ I+  ++CALG +A  P+   I+ FR
Sbjct: 526 ELLGRMAEAIKDGSLCALGGSAPNPVLSTIRYFR 559


>gi|256827981|ref|YP_003156709.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028]
 gi|256577157|gb|ACU88293.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028]
          Length = 612

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 155/392 (39%), Positives = 228/392 (58%), Gaps = 6/392 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G+      + +   + II E++ SGLRGRGGAGF TG+KW F      D   Y++ NADE
Sbjct: 156 GYQGLAKALFDIAPEGIIEEMRLSGLRGRGGAGFPTGLKWKFAAASPGDV-KYVLCNADE 214

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR I+  +PH ++EG +IA+ AIGAH  +IY R E+    + L  A+ +    
Sbjct: 215 GDPGAFMDRSILESDPHAVLEGMIIAAVAIGAHQGYIYCRSEYPLAIQRLTLAIGQAREL 274

Query: 147 GLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           GLLG  S LG D   D+ ++ GAGA++CGEETAL+ S+EG++G PR +PPFPA  GL+G 
Sbjct: 275 GLLG-ESILGSDFSFDLEIYQGAGAFVCGEETALMRSIEGRRGMPRPRPPFPAQQGLWGR 333

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVE++A V  I+R G   Y+G G E + GTK+F++SG VN    VE  M      
Sbjct: 334 PTVLNNVETLANVGRIIRLGGGHYAGIGTEGSTGTKVFALSGDVNNIGLVEVDMGTPLSV 393

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L+    GG+  G     AV  GG S   +PA  +    +DY+ + + G+ +G+  VIVM+
Sbjct: 394 LVNDIGGGVP-GKRACKAVQLGGPSGGSIPA-HLLDTPVDYEAIAKAGAIMGSGGVIVMN 451

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
             T ++        F + ESCG+CTPCREGT   + ++ R+ +G     ++  L +++  
Sbjct: 452 DRTCMVDMARFFMDFIQDESCGKCTPCREGTRRQLEILTRICEGRGAPGDLRTLEDLAAV 511

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           I   ++C LG  A+ PI   +++FR   E  I
Sbjct: 512 ITDASLCGLGQTASNPILSALRHFRDEFEAHI 543


>gi|86359439|ref|YP_471331.1| formate dehydrogenase, beta subunit protein [Rhizobium etli CFN 42]
 gi|86283541|gb|ABC92604.1| formate dehydrogenase, beta subunit protein [Rhizobium etli CFN 42]
          Length = 518

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 152/410 (37%), Positives = 221/410 (53%), Gaps = 5/410 (1%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+     G+    SL D  + G    + + +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKEQTRLTFARCGITDPLSLGDYEAHGGLAGLRRAVSMTPVEIVKEVTDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     +R  Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVLDASGER-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y R E+      +  A+     +G+LG S    G   DI V  GAGAY+CGEETAL
Sbjct: 217 KGFVYTRSEYPHAIAVMSEAIGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ RGA++Y  FG   +RG
Sbjct: 277 LNSLEGKRGIVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMERGAAFYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V Y    E +  ++  +++++  GG R G   + AV  GG      P   +
Sbjct: 337 TIPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTRTGRP-VKAVQVGGPLGAYFPR-AL 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  ++++ +GI  ++   LL ++   ++  ++CALG    +P+   + +F
Sbjct: 455 VETVDKIARGIEPEKNRVLLGDLCNTMKFGSLCALGGFTPYPVMSAMTHF 504


>gi|222150019|ref|YP_002550976.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4]
 gi|221737001|gb|ACM37964.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4]
          Length = 518

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 157/422 (37%), Positives = 227/422 (53%), Gaps = 13/422 (3%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+  +  G+    SL D         + K +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKNQTRLTFSRCGITDPLSLEDYRHYKGLTGLAKAIAMPPADIVTEVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    +++  Y+V NADE + GT  DR IM  +P  LIEG VIA  A+GA 
Sbjct: 158 FPTGIKWKTVADAKAEQ-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMVIAGIAVGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177
             ++Y R E+      ++ A++     G+LG+ S LG  Y  D+ V  GAGAY+CGEET+
Sbjct: 217 KGYVYTRSEYPHAIVVMREAIEIARKQGILGA-SVLGSAYAFDMEVREGAGAYVCGEETS 275

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL SLEGK+G  R KPP PA  GL+G PT VNNV S+A +P I+ RGA +Y  +G   + 
Sbjct: 276 LLNSLEGKRGVVRAKPPLPALEGLFGKPTVVNNVMSLASIPVIMDRGAQFYRDYGVGRSH 335

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT    I+G+V +    E +  +T  E+I    GG   G   + AV  GG      P   
Sbjct: 336 GTIPIQIAGNVKHGGLYETAFGLTLGEIINDIGGGTLTGRP-VKAVQVGGPLGAYFPP-S 393

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   + DY+     G  +G A ++V D S D++K       F   ESCG+CTPCR G+  
Sbjct: 394 LFDTVFDYEAFTAAGGLIGHAGIVVFDDSADMLKQARFAMEFCAVESCGKCTPCRIGSTR 453

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF------RPL 411
            +  ++R+ KGI  ++   LL ++   ++  ++CALG    +P+   + +F       PL
Sbjct: 454 GVETVDRIAKGIEPEKNKVLLEDLCNTMKFGSLCALGGFTPYPVMSAMTHFPQDFAPAPL 513

Query: 412 IE 413
           +E
Sbjct: 514 VE 515


>gi|332981956|ref|YP_004463397.1| NADH dehydrogenase (quinone) [Mahella australiensis 50-1 BON]
 gi|332699634|gb|AEE96575.1| NADH dehydrogenase (quinone) [Mahella australiensis 50-1 BON]
          Length = 434

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 233/393 (59%), Gaps = 7/393 (1%)

Query: 20  LSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +S+ +S G +  + K L   K +D II+EVKASGL GRGGA F TG+K   +     D  
Sbjct: 21  ISEYISTGGYKALVKALLTMKPQD-IIDEVKASGLLGRGGAAFPTGLKMQMVHDTPGDV- 78

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V NADE EPGT KDR +M  +P+ L+EG ++A +A+GA   +IY+RGE+ +  E ++
Sbjct: 79  KYVVCNADEGEPGTFKDRYLMEGDPYQLVEGIILAGYAVGAQKGYIYIRGEYDQAIELMK 138

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            AV++    G LG N  K  ++ DI V  GAGAYICGEE AL+ESLEGK G+PR KPP+P
Sbjct: 139 NAVEQTRKIGYLGDNILKQRFNFDIEVRSGAGAYICGEEFALIESLEGKSGRPRYKPPYP 198

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+  PT +NNVE++  +P I+  G+  +   G +++ GTKL  +SG++      E 
Sbjct: 199 PISGLWDRPTLINNVETLVNIPYIVSNGSKAFRSAGTDSSAGTKLICLSGNIVNRGVFEV 258

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              IT  ++I     G+    + L  +  GG+S  C+P+  M    +D+  +++ G  +G
Sbjct: 259 PFGITLKDIIHDIGQGVPDERE-LKMIQIGGASGSCIPS-DMLDVKLDFADMRKNGLSMG 316

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           + A+I  D S  +I  +  L  F+ HESCG+CTPCREG   +  +++   KG A     D
Sbjct: 317 SGAIIAFDDSRCVIDIVKSLLKFFAHESCGKCTPCREGNPQLYNLIDDFSKGSATPSHYD 376

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +L  +++ ++   +C LG A+  PI   ++ F+
Sbjct: 377 VLQSLTQTMQQAALCGLGQASPMPIVSTLQYFK 409


>gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. 18P13]
          Length = 597

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 200/347 (57%), Gaps = 4/347 (1%)

Query: 65  KWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           KW     +  +    Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA   +I
Sbjct: 175 KWQLARNIVPNADQKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGATQGYI 234

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    + L+ A+ +    GLLG N     +  DI +  GAGA++CGEETAL+ S+
Sbjct: 235 YVRAEYPIAVQRLEIAIKQAREYGLLGKNIFGTDFSFDIGLRLGAGAFVCGEETALMTSI 294

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+ +GA W++  G E ++GTK+F
Sbjct: 295 EGNRGEPRPRPPFPAEKGLFQKPTILNNVETYANIPQIILKGADWFASMGTEKSKGTKVF 354

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           ++ G ++    VE  M  T   +IE+  GGI  G     A   GG S  C+PA  M  AI
Sbjct: 355 ALGGKIHNTGLVEVPMGTTLRTVIEEIGGGIPNG-KKFKAAQTGGPSGGCIPAEHMDIAI 413

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            DYD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR GT  M  ++
Sbjct: 414 -DYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTKRMYEIL 472

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +++ KG A   ++D L E+  +++  ++C LG  A  P+   ++ FR
Sbjct: 473 DKITKGKATLEDLDKLEELCYHVKANSLCGLGQTAPNPVLSTLRYFR 519


>gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 624

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 155/398 (38%), Positives = 236/398 (59%), Gaps = 7/398 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +   S+ + ++ G ++ ++K L ++  + II+E+  S LRGRGG GF  G KW+ + +  
Sbjct: 153 IDATSIKEYLAVGGYEALEKALFDRDDEGIIHEITESNLRGRGGGGFPAGRKWTQVRRQ- 211

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            +   Y+V N DE +PG   DR IM  +PH ++EG +IA+ A  A   +IYVR E+    
Sbjct: 212 VEPTKYVVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAAKACKAREGYIYVRAEYPLAI 271

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
             L+ A+DE    GLLG +  LG D   DI ++ GAGA++CGE +AL  S+EGK+G PR+
Sbjct: 272 SRLRKAIDEAREYGLLGEHI-LGTDFSFDIKINRGAGAFVCGEGSALTASIEGKRGMPRV 330

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPP     GL+  PT +NNVE+ A VP I+  G  WY G G E + GTK F+++G++   
Sbjct: 331 KPPRTVEQGLFEKPTVLNNVETFANVPLIILNGVDWYKGIGPEKSPGTKAFALTGNIENT 390

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M  T  E+I    GG+R G  N  AV  GG S  CL +       +D+D LK+ 
Sbjct: 391 GLIEVPMGTTLREVIFDIGGGMRDGA-NFKAVQIGGPSGGCLTS-DDLDLPLDFDSLKKA 448

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  ++VMD +T +++       F ++ESCG+C PCREGT  M+ ++ER+V G  +
Sbjct: 449 GAMIGSGGLVVMDENTCMVEVARFFMNFTQNESCGKCVPCREGTKRMLEILERIVVGGGE 508

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++D L E++  I    +C LG  AA+P+   IK F+
Sbjct: 509 ENDLDQLLELADTISSTALCGLGKTAAFPVVSTIKKFK 546


>gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
 gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
          Length = 635

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 149/384 (38%), Positives = 224/384 (58%), Gaps = 6/384 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G+    D +L K  + +I+ +K SGLRGRGG GF TG KW F  K  +D   Y+V NADE
Sbjct: 177 GYMALADSLLHKKPEEVIDVIKRSGLRGRGGGGFPTGKKWEFAHKQQADM-KYVVCNADE 235

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR IM  +PH+++E   +  ++IG+    +Y+R E+    + L+ A+ +    
Sbjct: 236 GDPGAFMDRSIMEGDPHSIVEAMAVCGYSIGSPKGLVYIRAEYPLAIQRLKIAIAQAREY 295

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           GLLG N     +  DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G P
Sbjct: 296 GLLGKNIFGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAEAGYLGKP 355

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T VNNVE++A +P IL +G  W++  G E ++GTK+F+++G +N    +E  M  T  E+
Sbjct: 356 TNVNNVETLANIPIILTKGVEWFASIGTERSKGTKVFALAGKINNVGLIEVPMGTTLREV 415

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVMD 
Sbjct: 416 IYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAEGSMMGSGGMIVMDE 473

Query: 326 STDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
             D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G    +++D L  + K 
Sbjct: 474 D-DCMVSVSRFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGRGTMKDLDALSTLGKV 532

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           I+   +C LG  +  P+   + NF
Sbjct: 533 IKDTALCGLGQTSPNPVLSTLNNF 556


>gi|326202423|ref|ZP_08192292.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325987541|gb|EGD48368.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 575

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 145/393 (36%), Positives = 229/393 (58%), Gaps = 5/393 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + +S+ ++ G +  + K L +   D +++ VK SGLRGRGG GF TG+KW    K   D+
Sbjct: 156 EDISEYIALGGYQALGKALTQMSADEVVDTVKKSGLRGRGGGGFPTGLKWEITRKQ-QDK 214

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             +++ NADE +PG   DR I+  +PH++IE   I ++AIGA    +Y+R E+    E L
Sbjct: 215 EKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGADKGIVYIRAEYPLAIERL 274

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             A+++    GLLG       ++ DI + +GAGA++CGEETAL+ S EGK+G+P  KPP+
Sbjct: 275 TKALEQARELGLLGKGIFGTDFNFDITLKYGAGAFVCGEETALINSCEGKRGEPNYKPPY 334

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G +G PT VNNVE+ A +P I+ +GA W++  G E ++GTK+F+++G +N    VE
Sbjct: 335 PAEEGYWGHPTCVNNVETFANIPVIMTKGAEWFASMGTEKSKGTKVFALAGKINNVGLVE 394

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M IT  E+I    GGI  G     AV  GG S   +    +   I DYDGL ++G+ +
Sbjct: 395 VPMGITLREIIFDIGGGIPHG-KKFKAVQTGGPSGGVITEKNLDTPI-DYDGLLKIGTMM 452

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD   +++        F   E+CG+C P R GT  +  ++ ++  G A   ++
Sbjct: 453 GSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCAPGRIGTKRLFEMLHKIASGEATMDDL 512

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           D L +++  ++  ++C L   A  P+   +K+F
Sbjct: 513 DALKQLAYMVKDSSLCGLCQTAPNPVVSTMKHF 545


>gi|222087421|ref|YP_002545958.1| formate dehydrogenase [Agrobacterium radiobacter K84]
 gi|221724869|gb|ACM28025.1| formate dehydrogenase [Agrobacterium radiobacter K84]
          Length = 518

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 156/424 (36%), Positives = 225/424 (53%), Gaps = 17/424 (4%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+ F     ++  SL D    G    + + +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLREQTRLTFARCGVIESLSLEDYEVHGGLKGLRRAVGMAAADIVKEVMDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           F TG+KW    K   D P    Y+V NADE + GT  DR IM  +P  LIEG  IA  A 
Sbjct: 158 FPTGIKW----KTVLDAPGARKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLAT 213

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175
           GA   F+Y R E+      +  AV+    +G+LG++    G   DI +  GAGAY+CGEE
Sbjct: 214 GATKGFVYARSEYPHAIAVMTEAVEVARGAGILGASVLGSGKAFDIEIRTGAGAYVCGEE 273

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TALL SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   
Sbjct: 274 TALLNSLEGKRGIVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMDKGATFYRDFGMGR 333

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           +RGT    I+G+V Y    E +  ++  ++++K  GG   G   + AV  GG      P 
Sbjct: 334 SRGTIPLQIAGNVKYGGLYETAFGLSLGDIVDKIGGGTATGRP-VKAVQVGGPLGAYFPR 392

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +     DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+
Sbjct: 393 -ALFDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGS 451

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR------ 409
              +   +++ +GI  ++   LL ++   ++  ++CALG    +P+   + +F       
Sbjct: 452 TRGVETADKIARGIEPEKNRVLLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDFSPV 511

Query: 410 PLIE 413
           PLIE
Sbjct: 512 PLIE 515


>gi|312127640|ref|YP_003992514.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777659|gb|ADQ07145.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis
           108]
          Length = 598

 Score =  252 bits (644), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 156/411 (37%), Positives = 243/411 (59%), Gaps = 8/411 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ + ++   +  + K+L E   + +++ VK SGLRGRGG GF TG+KW F  K  
Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVVDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+   ++YVR E+    
Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244

Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
           + L+ A+++    GLLG N  LG  ++ DI +  GAGA++CGEETAL+ S+EG +G+PR 
Sbjct: 245 KRLEIAIEQARQYGLLGKNI-LGTNFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++GTK+F++ G VN  
Sbjct: 304 RPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M  T  E++E   GG   G     AV  GG S  C+PA  M   I D+D L  +
Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTAL 421

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  M+ +++++  G   
Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGT 481

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + +  RC
Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531


>gi|327188943|gb|EGE56135.1| formate dehydrogenase protein, beta subunit [Rhizobium etli
           CNPAF512]
          Length = 553

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 153/411 (37%), Positives = 222/411 (54%), Gaps = 7/411 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   SLSD  + G    + + +      I+ EV  SGLRGRGGAG
Sbjct: 133 FLKQQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAG 192

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     +R  Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA 
Sbjct: 193 FPTGIKWKTVLDAPGER-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 251

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETA 177
             FIY R E+     ++  AV     +G+LG  S LG     DI V  GAGAY+CGEETA
Sbjct: 252 KGFIYTRSEYPHAIAAMSEAVGIARQAGILGP-SVLGSARAFDIEVRTGAGAYVCGEETA 310

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +R
Sbjct: 311 LLNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSR 370

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT    I+G+V Y    E +  ++  +++++  GG   G   + AV  GG      P   
Sbjct: 371 GTIPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFPR-A 428

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +     DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+  
Sbjct: 429 LFDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTR 488

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            +   +++ +GI  ++  +LL ++   ++  ++CALG    +P+   + +F
Sbjct: 489 GVETADKIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 539


>gi|163857997|ref|YP_001632295.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella petrii
           DSM 12804]
 gi|163261725|emb|CAP44027.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella
           petrii]
          Length = 522

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 150/410 (36%), Positives = 227/410 (55%), Gaps = 6/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++      + + L      I++EV ASGLRGRGGA F
Sbjct: 101 LKKQQRLTFARVGITDPLSIDDYVAHDGLQGLRRALCLTPQQIVDEVSASGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +++  Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWKTVLTTPAEQ-KYIVCNADEGDSGTYSDRLLMEGDPYVLIEGMAIAGLAVGATY 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+ +   +L  A+     +G LG + +  G   D+ V  GAGAYICGEET+LL
Sbjct: 220 GYIYVRSEYPQAIATLNEAIARARQAGWLGDDIQGSGRRFDLEVRKGAGAYICGEETSLL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL RGA++Y  +G   ++GT
Sbjct: 280 ESLEGKRGVVRAKPPLPAIAGLFGKPTVINNVISLASVPIILARGAAYYRDYGVGRSQGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+    GG   G   L AV  GG     LP  Q  
Sbjct: 340 LPFQLAGNLKHGGLVEAAFGLTLRELLYDFGGGSASG-RPLRAVQVGGPLGAYLPESQWD 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    + + +G   ++  D + D+ +       F   ESCG+CTPCR G    +
Sbjct: 399 -VPLDYEAYAAISAMVGHGGIVAFDDTVDMARMARYAMEFCAVESCGKCTPCRIGAVRGV 457

Query: 360 RVMERL-VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             ++++  +G   ++++ LL ++   + G ++CALG    +P+   + +F
Sbjct: 458 ETLDKIATRGAQHEQQVHLLRDLCDTMLGGSLCALGGMTPYPVLSALNHF 507


>gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
 gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
          Length = 597

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 165/417 (39%), Positives = 243/417 (58%), Gaps = 6/417 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q R+     GL   +++ + ++   +  + K+L E     +I+EV  SGLRGRGG GF T
Sbjct: 115 QKRVALRNCGLINPENIEEYIANDGYRALAKVLSEMTPQQVIDEVTRSGLRGRGGGGFPT 174

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW F      D   Y+V N DE +PG   DR I+  +PHT++E   IA +AIGA   +
Sbjct: 175 GKKWQFAKDAPGDV-KYVVCNGDEGDPGAFMDRSILEGDPHTVLEAMAIAGYAIGAKEGY 233

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    + L+ A+++    GLLG N    G++ DI +   +GA++CGEETALL S
Sbjct: 234 IYVRAEYPLAVKRLEIAIEQARERGLLGKNILGTGFEFDIFLRLRSGAFVCGEETALLAS 293

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++G+PR +PPFPA  GL+G PT +NNVE+ A +P I+  GA W++  G E ++GTK+
Sbjct: 294 IEGRRGEPRPRPPFPAIEGLWGKPTLINNVETFANIPPIILNGADWFASIGTERSKGTKV 353

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F++ G +N    VE  M  T  E+I    GGI  G     AV  GG S  C+PA  +   
Sbjct: 354 FAVGGKINNTGLVEIPMGTTLREVIYDIGGGIPNG-KKFKAVQTGGPSGGCIPASLLDMP 412

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           I +YD L + GS +G+  +IVMD  T ++        F + ESCG+C PCR GT  M+ +
Sbjct: 413 I-EYDTLTQAGSMMGSGGMIVMDEDTCMVDIAKFFLTFTQDESCGKCPPCRIGTKRMLEI 471

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +ER+  G  ++ +I+LL  ++KNI+   +C LG  A  P+   ++ FR   E  I +
Sbjct: 472 LERITNGEGREGDIELLETLAKNIKASALCGLGQTAPNPVLSTLRYFRDEYEAHIRE 528


>gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
          Length = 627

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/409 (37%), Positives = 244/409 (59%), Gaps = 8/409 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q+R+     G +    + D ++   +  + KIL E   + +I EV  SGLRGRGG GF T
Sbjct: 145 QERVTLRYCGRIDPDDIYDYIAHRGYRAISKILQEMNPEEVIKEVNDSGLRGRGGGGFPT 204

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KWSF       +  Y++ N DE +PG   DR +M   PH+++EG +IA +AIGA+  +
Sbjct: 205 GRKWSFAASQPGPK-KYIICNGDEGDPGAFMDRSVMEGNPHSVLEGMMIAGYAIGANEGY 263

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD--IIVHHGAGAYICGEETALLE 180
           IY R E+    + ++ A+ +  A GLLG+N  LG D +  I +  GAGA++CGEETAL+ 
Sbjct: 264 IYARAEYPLAIKRMRKAIADAEAHGLLGNNI-LGSDFNFKINIKEGAGAFVCGEETALIA 322

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G PR +PPFPA  GL+GCPT +NNVE++A +  I+  GA  +  +G   + GTK
Sbjct: 323 SIEGERGMPRPRPPFPAVKGLWGCPTIINNVETLANLRYIINNGAGEFKKYGTAGSSGTK 382

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            F+++G V     VE  M +T  E++    GG+R G     +V  GG S  CL   ++  
Sbjct: 383 TFALAGQVQNTGLVEVPMGVTLREVVFDIGGGLRDG-KKYKSVQIGGPSGGCLTEDKLD- 440

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DYD L ++G+ +G+  ++VM   T +++       F ++ESCG+C PCREGT  ++ 
Sbjct: 441 LPLDYDELMKVGAMIGSGGLVVMGDDTCMVETAKFFMGFVQNESCGKCVPCREGTKQLLA 500

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++ ++ +G   + ++DLL E+++N++  ++C LG  A  P+   ++ FR
Sbjct: 501 LLTKITEGKGTEADLDLLEELAQNVKDGSLCGLGKTAPNPVLTTLRYFR 549


>gi|254503842|ref|ZP_05115993.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
 gi|222439913|gb|EEE46592.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
          Length = 626

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/381 (40%), Positives = 215/381 (56%), Gaps = 23/381 (6%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+ ++ SGLRG GGAGF+TG KW F     ++R  +++ NADE EPGT KDR ++   P
Sbjct: 228 IISMIEESGLRGCGGAGFTTGRKWRFAAAERTER-SFVICNADEGEPGTFKDRVLLTERP 286

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG---YDV 159
           H LIEG  IA+ A+GA    +Y+RGE++  RE L+  ++E    GLLG  + LG   +D 
Sbjct: 287 HLLIEGMTIAARAVGAKEGILYLRGEYVYLRELLEQVLEERRRRGLLG-KAILGTKRFDF 345

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI +  GAGAYICGEE AL+ S EG  G+P+ +PPFP N G  G PT VNNVE+      
Sbjct: 346 DIRIQMGAGAYICGEEGALISSCEGLPGEPKTRPPFPVNRGYLGYPTVVNNVETFCHAAR 405

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL +GA W+   G E + GTKLFS+ G    P   E     +  EL+E     + GG D 
Sbjct: 406 ILDQGAKWFHDIGTEGSHGTKLFSVCGDCLNPGIYELPYGHSVWELLE-----MVGGQDA 460

Query: 280 LLAVIPGGSSVPCLPAGQM--RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             AV  GG      P+G M  R +        ++ +G    A+IV +   +I++ +    
Sbjct: 461 -AAVQVGG------PSGAMIARDSFHRKLTFDDLATG---GAIIVFNGQRNILEIVDYYM 510

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F+ HESCG CTPCR G  ++ + +E+  KG+A   +ID L ++S  I   + C LG  +
Sbjct: 511 SFFVHESCGYCTPCRVGNVFLQKAIEKFRKGLANPEDIDYLKDLSGTIIETSRCGLGMTS 570

Query: 398 AWPIQGLIKNFRPLIEERIDQ 418
             P+   + NF PL+   + Q
Sbjct: 571 PNPVLSTLANF-PLVYSAMTQ 590


>gi|254491470|ref|ZP_05104649.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Methylophaga thiooxidans DMS010]
 gi|224462948|gb|EEF79218.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Methylophaga thiooxydans DMS010]
          Length = 565

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 214/368 (58%), Gaps = 20/368 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRH 100
           +++ +  SGLRG GGAGF  G KW    ++  D+P    + VN DE EPGT KD+  +  
Sbjct: 211 VLDVMDDSGLRGLGGAGFPVGRKW----RIVRDQPAPKLMAVNIDEGEPGTFKDKYYLDR 266

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           +PH  +EG +IA++A+G    +IY+R E+   RE L+  + +  A+  + +  KL     
Sbjct: 267 DPHCFLEGTLIAAWAVGIEEVYIYLRDEYAAIREMLEVEMAKLQANPPVANMPKLH---- 322

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
             +  GAGAYICGEE+A++ES+EGK+G PRL+PPF A VGL+G PT  +N+ES+  V  I
Sbjct: 323 --LRRGAGAYICGEESAMIESIEGKRGMPRLRPPFVAQVGLFGRPTLEHNMESLYWVRDI 380

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           L +GAS  +  GR    G + FS+SG VN P        IT  ELI+++C G+  G +  
Sbjct: 381 LEKGASCMTDHGRHGRTGLRSFSVSGRVNKPGVHLAPAGITMRELIDEYCDGMLDGHE-F 439

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
               PGG+S   LPA  M    +D+D L + G  +G+AAV+V        +       F+
Sbjct: 440 YGYFPGGASGGILPAS-MGDIPLDFDTLNDHGCFIGSAAVVVFSDKDQARELAVNAMKFF 498

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           + ESCGQCTPCR GT   + +M+       ++ + DLL E+S+ +   +IC LG AA  P
Sbjct: 499 EDESCGQCTPCRVGTAKAVNLMQE------KQWDQDLLEELSQVMVDASICGLGQAAPNP 552

Query: 401 IQGLIKNF 408
           ++ +IK F
Sbjct: 553 LRCVIKYF 560


>gi|260588480|ref|ZP_05854393.1| protein HymB [Blautia hansenii DSM 20583]
 gi|331082243|ref|ZP_08331370.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540955|gb|EEX21524.1| protein HymB [Blautia hansenii DSM 20583]
 gi|330403037|gb|EGG82602.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 624

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 159/426 (37%), Positives = 240/426 (56%), Gaps = 8/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            +  Q RI   N      +SL + ++ G ++ + K L +   + ++NEV  S LRGRGG 
Sbjct: 136 FIAKQTRIALENCGKFDAESLDEYIASGGYEALSKALFDMTPEDVLNEVDKSKLRGRGGG 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  +        H++V N DE +PG   D  +M  +P+ LIEG  IA++A GA
Sbjct: 196 GFPTGRKWKQVAAHKDVAEHFVVCNGDEGDPGAFMDGSVMEGDPYRLIEGMTIAAYATGA 255

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176
              +IYVR E+      L+ A+ +    GLLG +  LG D    +H   GAGA++CGE +
Sbjct: 256 QNGYIYVRAEYPLSVARLRKAIRQAEEKGLLGDHI-LGTDFQFHMHINRGAGAFVCGEGS 314

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL  S+EG +G PR+KPP   + GL+  PT +NNVE+ A VP I+ +GA W+   G E +
Sbjct: 315 ALTASIEGDRGMPRVKPPRTVDKGLWAKPTVLNNVETFANVPGIVLKGADWFKTIGTEGS 374

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK FSI+G +     +E  M  T  E+I    GGI+GG D   A+  GG S  CL   
Sbjct: 375 PGTKTFSITGAIENTGLIEVPMGTTLREIIYDIGGGIKGGGD-FKAIQIGGPSGGCLTKE 433

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D+D +K+  + +G+  ++VMD +T +++       F + ESCG+C PCREGT 
Sbjct: 434 HLDVG-LDFDSVKKYNAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTK 492

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ER+V G  +  ++D L E++  ++   +C LG +A  P+   +K FR   EE I
Sbjct: 493 RMLEILERIVNGEGKLEDLDTLEELAAMVKNMALCGLGKSAPLPVISTLKTFRKEYEEHI 552

Query: 417 DQYHRC 422
            + H+C
Sbjct: 553 VE-HKC 557


>gi|312135114|ref|YP_004002452.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
 gi|311775165|gb|ADQ04652.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
          Length = 598

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/411 (37%), Positives = 243/411 (59%), Gaps = 8/411 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG GF TG+KW F  K  
Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+   ++YVR E+    
Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244

Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
           + L+ A+++    GLLG N  LG  ++ DI +  GAGA++CGEETAL+ S+EG +G+PR 
Sbjct: 245 KRLEIAINQAREYGLLGKNI-LGTDFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++GTK+F++ G VN  
Sbjct: 304 RPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M  T  E++E   GG   G     AV  GG S  C+PA  +   I D+D L  +
Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLIDTPI-DFDSLTAL 421

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  M+ +++++  G   
Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITTGNGT 481

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + +  RC
Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531


>gi|209885822|ref|YP_002289679.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha
           carboxidovorans OM5]
 gi|209874018|gb|ACI93814.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha
           carboxidovorans OM5]
          Length = 570

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 206/372 (55%), Gaps = 21/372 (5%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  ++ I+  +  + LRG GGAGF TG KW  +  +    P  + VN DE EPGT KDR 
Sbjct: 209 QTSKEDILKALDGASLRGLGGAGFPTGRKWRAV--MGEPGPRLMAVNGDEGEPGTFKDRF 266

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            +  +PH  +EG +I +  + A   +IY+R E+   RE L   + +    G         
Sbjct: 267 YLETDPHRFLEGMLIGAHIVDAGEVYIYLRDEYPASREILAREIAKLPPGG--------- 317

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + +  GAGAYICGEE++LLES+EGK+G PR KPP+P  VGL+G PT +NNVE++  
Sbjct: 318 --PTLHLRRGAGAYICGEESSLLESIEGKRGLPRHKPPYPFQVGLFGLPTLINNVETLWW 375

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V  I+++G  W+   GR    G + +S+SG V  P        +T  ELIE+ C G+  G
Sbjct: 376 VRDIVQKGGDWWQSHGRNERHGLRSYSVSGRVKNPGVKLAPAGVTIKELIEEFCDGMADG 435

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                A +PGG+S   LPA  M    +D+  L++ G  +G+AAV+V+    DI  A   L
Sbjct: 436 -HQFRAYLPGGASGGILPA-SMNDIPLDFGTLEKYGCFIGSAAVVVLSDKDDIKGAALNL 493

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
             F++ ESCGQCTPCR GT     +ME  V         DLL E+S+ +   +IC LG A
Sbjct: 494 MKFFEDESCGQCTPCRIGTQKAAALMESHV------WNRDLLMELSQTMRDASICGLGQA 547

Query: 397 AAWPIQGLIKNF 408
           A+ P+  +I+ F
Sbjct: 548 ASNPLTSVIRYF 559


>gi|328543746|ref|YP_004303855.1| NADH dehydrogenase (Quinone) [polymorphum gilvum SL003B-26A1]
 gi|326413490|gb|ADZ70553.1| NADH dehydrogenase (Quinone) [Polymorphum gilvum SL003B-26A1]
          Length = 525

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/405 (38%), Positives = 216/405 (53%), Gaps = 8/405 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G    + K +      I+  V ASGLRGRGGAGF TG+KW  + +    +  
Sbjct: 121 SLDDYRALGGLAGLQKAVAMPPAEIVETVTASGLRGRGGAGFPTGIKWKTVLEAAGPQ-K 179

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA   ++Y+R E+      ++ 
Sbjct: 180 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGATRGYVYLRSEYPDAIAVMRE 239

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           AVD     G+LG     S   +D++I V  GAGAY+CGEETALL SLEGK+G  R KPP 
Sbjct: 240 AVDRARRHGVLGPRVLGSPHAFDMEIRV--GAGAYVCGEETALLNSLEGKRGVVRAKPPL 297

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ G  G PT VNNV S+A VP IL RGA++Y  FG   +RGT    I+G+V Y    E
Sbjct: 298 PAHHGFLGRPTVVNNVISLASVPIILDRGAAFYRDFGMGRSRGTIPIQIAGNVRYGGLFE 357

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
            +  +T  E+++   GG   G   + AV  GG      P   +     DY+        +
Sbjct: 358 TAFGLTLGEIVDDIAGGTASGR-PVKAVQVGGPLGAYFPR-ALFDTPFDYEEFARRDGLI 415

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G A V+V D S D++        F   ESCG+CTPCR G    + V +R+  G   + +I
Sbjct: 416 GHAGVVVFDDSVDMLSQARFAFEFCAVESCGKCTPCRIGAVRGVEVADRIAAGQDPEAQI 475

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            L+ ++   ++  ++CALG    +P+   + +FR   + R  + H
Sbjct: 476 ALIADLCTTMKHGSLCALGGFTPYPVMSALTHFRQDFQPRSPRSH 520


>gi|194292240|ref|YP_002008147.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226144|emb|CAQ72091.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 569

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 141/368 (38%), Positives = 209/368 (56%), Gaps = 16/368 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D ++  ++ SGLRG GGAGF TG KW  +    +  P  + VN DE EPGT KDR  +  
Sbjct: 213 DAVLATMEDSGLRGLGGAGFPTGRKWRIVRGEAA--PRLMAVNIDEGEPGTFKDRVYLER 270

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           +PH  +EG +IA+  +     +IY+R E+   R  L  A+ +      L  +  +     
Sbjct: 271 DPHRFLEGMLIAARVVDVAAIYIYLRDEYAGCRALLAEALQQ------LQQDPPVARLPR 324

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT  +N E++  V  I
Sbjct: 325 IELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLYWVRDI 384

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + +GA W++  GR   +G + FS+SG V  P        IT  ELI+++CGG+  G    
Sbjct: 385 IEKGAEWFASQGRNGRKGLRSFSVSGRVRRPGVHLAPAGITVRELIDEYCGGMLDG-HAF 443

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
              +PGG+S   LPA  M    +D+D L+  G  +G+AA++++       +A   L  F+
Sbjct: 444 YGYLPGGASGGILPAA-MGNIPLDFDTLQPYGCFIGSAAIVILSDHDSATQAARNLMHFF 502

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           KHESCGQCTPCR GT   + ++ +       K ++  L ++S  +   +IC LG AA  P
Sbjct: 503 KHESCGQCTPCRTGTAKTLDLIRQ------PKWDLAALDDLSAVMRDASICGLGQAAPNP 556

Query: 401 IQGLIKNF 408
           +  +IK F
Sbjct: 557 VDCVIKYF 564


>gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 597

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 166/384 (43%), Positives = 231/384 (60%), Gaps = 6/384 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E     +I+EVK SGLRGRGG GFSTG KW F      D   Y+V NADE +PG   D
Sbjct: 147 LTEMTPQQVIDEVKQSGLRGRGGGGFSTGTKWQFAANAQGDI-KYVVCNADEGDPGAFMD 205

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
           R I+  +PHT++E   IA +AIGA   +IYVR E+    + L+ A+++    GLLG N  
Sbjct: 206 RSILEGDPHTVLEAMEIAGYAIGASEGYIYVRAEYPIAVKRLEIAIEQARNHGLLGKNI- 264

Query: 155 LGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
           LG D   DI +  G+GA++CGEETALL S+EG++G+PR +PPFPAN GL+  PT +NNVE
Sbjct: 265 LGTDFSFDIFIRLGSGAFVCGEETALLASVEGRRGEPRPRPPFPANKGLWDKPTIINNVE 324

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           + A VP I+ +GA W+S  G E ++GTK+F++ G +N+   VE  M  T  E+I   CGG
Sbjct: 325 TYANVPEIILKGAKWFSSVGSEKSKGTKVFAVGGKINHTGLVEIPMGTTLKEVIYDICGG 384

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           I        AV  GG S  CLPA  +   I +YD L + GS +G+  +IVMD    ++  
Sbjct: 385 IPNN-KKFKAVQTGGPSGGCLPASLLDMPI-EYDTLIQAGSMMGSGGMIVMDEDNCMVDI 442

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
                 F + ESCG+C PCR GT  M+ ++ER+  G  ++ +I+LL  ++ +I+   +C 
Sbjct: 443 AKFFLTFTQEESCGKCPPCRIGTKRMLEILERITNGEGEEGDIELLENLANSIKASALCG 502

Query: 393 LGDAAAWPIQGLIKNFRPLIEERI 416
           LG  A  P+   I+ FR   E  I
Sbjct: 503 LGQTAPNPVLSTIRYFRDEYEAHI 526


>gi|251773162|gb|EES53715.1| NADH dehydrogenase (quinone) F subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 617

 Score =  250 bits (639), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/420 (35%), Positives = 235/420 (55%), Gaps = 6/420 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q +I ++  GL    S+ D ++   +  + K+L E   D +I+E+  SGLRGRGG GF T
Sbjct: 135 QVKIVSSRCGLIDPSSIDDYIATDGYKALRKMLTEMTPDMVIDEMTKSGLRGRGGGGFYT 194

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCA 121
           G+KW  + +       Y+V NADE +PG   DR I+  +PH+++EG + AS+AIG A   
Sbjct: 195 GLKWK-LTRQSQGEEKYVVCNADEGDPGAFMDRSILEGDPHSVLEGMLAASYAIGNAKKG 253

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY R E+    + L+ A+D+      LG N    G+  DI +  GAGAY+CGEETALL 
Sbjct: 254 YIYCRAEYPLAIKRLRKAIDDARERNFLGDNILGTGFSFDITIKEGAGAYVCGEETALLA 313

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SL G++G P  KPPFPA  G++G PT +NNVE++  V  I+  G  WY+ +G E  +GTK
Sbjct: 314 SLMGERGMPWPKPPFPAQKGVWGKPTVINNVETLGNVGHIILNGGDWYASYGSEKTKGTK 373

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            F+++G V     +E         ++    GG+        A   GG S  C+PA  +  
Sbjct: 374 TFALTGSVKNSGLIEVPAGTPLRSIVFDIGGGMLEKKIPFKAAQLGGPSGGCIPASGLDT 433

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            + D++ +   G+ +G+  +++MD ++ I+        F + ESCG+CTPCR G+  M+ 
Sbjct: 434 PV-DFENVIAAGAIMGSGGIVIMDEASCIVDTAKFFLKFTQDESCGECTPCRVGSKIMLE 492

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ +G  Q+ ++D L  +S  ++  ++C LG AA  P+   I+ FR   E  I   H
Sbjct: 493 ILTRITEGKGQEGDLDELIRLSMYVKSNSLCGLGAAAPNPVLSTIRYFREEFEAHIRDKH 552


>gi|126666308|ref|ZP_01737287.1| NADH:ubiquinone oxidoreductase, chain F [Marinobacter sp. ELB17]
 gi|126629109|gb|EAZ99727.1| NADH:ubiquinone oxidoreductase, chain F [Marinobacter sp. ELB17]
          Length = 450

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/379 (40%), Positives = 225/379 (59%), Gaps = 9/379 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHE 101
           II+ +K + +RGRGG GFS G+KW  + +V    P  YL+ NADE EPGT KDR ++   
Sbjct: 67  IIDTMKQANVRGRGGGGFSAGVKWG-LTQVGDHLPRGYLICNADEMEPGTFKDRLLLEQL 125

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160
           PH LIE  +IA +A  +   +I++RGE++    S+  A++E   +GLLGS+ +  G+D D
Sbjct: 126 PHLLIESMIIAGYANRSCYGYIFLRGEYVEAARSVALAIEEARQAGLLGSDIAGSGFDFD 185

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +H GAG YICGEETAL+ SLEGK+  PR KPPFP   G +G PT VNNVE++  VP++
Sbjct: 186 IALHTGAGRYICGEETALINSLEGKRANPRAKPPFPGQSGAWGKPTVVNNVETLCNVPSV 245

Query: 221 LRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
           ++ GA WY G   G   + GTKL+ +SG V  P   E  +  +  E++E+  GG+R G  
Sbjct: 246 MQHGADWYQGLSGGLSEDGGTKLYGVSGLVERPGLWELPIGTSGREILER-AGGMRQG-H 303

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
            L A +PGG S   L    +    MD+  + + GS LGT  + V+     I+  +  L  
Sbjct: 304 TLKAWLPGGGSTGFLLPEHLD-LPMDFGTIGQYGSRLGTGLIAVVSERQSIVSLLRNLEQ 362

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAA 397
           F+  ESCG CTPCR+G  W +++++ L +G  +   I++L + +  +   RT CA    A
Sbjct: 363 FFARESCGWCTPCRDGLPWTVKILQALERGEGKPEYIEILEQHTLGLNPARTFCAHAPGA 422

Query: 398 AWPIQGLIKNFRPLIEERI 416
             P++  I++FR   E  I
Sbjct: 423 MMPLESAIRHFRADFEAGI 441


>gi|134299509|ref|YP_001113005.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052209|gb|ABO50180.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 569

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/402 (38%), Positives = 242/402 (60%), Gaps = 9/402 (2%)

Query: 19  SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ + ++ G +  + K L E     +++EVK SGLRGRGG GF TG+KW F+    SD+ 
Sbjct: 154 SIEEYIAVGGFKALAKTLQEMTPQQVVDEVKKSGLRGRGGGGFPTGLKWQFVLDQKSDQ- 212

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V N DE +PG   DR ++  +P+++IE   I  +A+GA+  + Y+R E+ +  +   
Sbjct: 213 KYVVCNGDEGDPGAFMDRSVLEDDPYSVIEAMTIGGYAVGANKGYAYIRLEYPKAIDHFN 272

Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            A+      GLLG+N   S   +D++I V  GAGA++CGEETALL S+EG++G+PR +PP
Sbjct: 273 KALARAREVGLLGNNILESDFSFDIEIRV--GAGAFVCGEETALLASIEGRRGEPRPRPP 330

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GL+  PT +NNVE+ A +  I+  G  WY+  G E ++GTK+F+++G +N    V
Sbjct: 331 FPAVSGLFEKPTLLNNVETYASICPIIINGGEWYATMGTEKSKGTKVFTLAGKINNTGLV 390

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + +T  E++E   GG+  G     A   GG S  C+PA  +   I DY+ L  +GS 
Sbjct: 391 EIPLGLTLREMVEDIGGGVPNG-KAFKAAQTGGPSGGCIPAAYLDTPI-DYENLAALGSI 448

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  +I++D ST ++        F + ESCG+CTPCR GT  M+ ++ER+ KG+ +  +
Sbjct: 449 VGSGGMIIVDESTCMVDLAKFYLGFTQDESCGKCTPCRIGTKRMLEILERITKGLGKPED 508

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +DLL E++ +I+   +C LG  A  PI   ++ FR   E  I
Sbjct: 509 LDLLVELANSIKASALCGLGQTAPNPILSTLRYFRDEFEAHI 550


>gi|114321659|ref|YP_743342.1| NADH dehydrogenase (quinone) [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228053|gb|ABI57852.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 563

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 212/368 (57%), Gaps = 19/368 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ ++ +GLRG GGAGF  G KW  +       P ++VVN DE EPGT KDR  +  +P
Sbjct: 208 VIDTLERAGLRGMGGAGFPAGRKWRTLRD--QPAPRHVVVNIDEGEPGTFKDRHYLESDP 265

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H  +EG +IA++AI A   ++Y+R E+   R  L+  + E  A          G    + 
Sbjct: 266 HRFLEGALIAAWAIEADAIWLYLRDEYAAARALLRQCLAELQAD-------PPGPLPAMH 318

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +  GAGAYICGEE+AL+ES+EGK+G PRL+PP  A VGL+G PT  +N+E++  V  IL 
Sbjct: 319 LRRGAGAYICGEESALIESIEGKRGLPRLRPPLVAQVGLFGHPTLAHNLETLHWVRDILA 378

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
            GA W++  GR   +G + +S+SG V +P        IT  ELI+++CGG+  G + L A
Sbjct: 379 HGADWFADQGRHGRQGLRSYSVSGRVRHPGVHLAPAGITLRELIDEYCGGMAPGHE-LKA 437

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG--LGTAAVIVMDRSTDIIKAIWRLSVFY 340
             PGG+S   LPA       +D+D L+       +G+AAVIV+ +   + +A      F+
Sbjct: 438 FFPGGASGGILPAAAA-DTPLDFDTLQAYDPHCFIGSAAVIVLSQQDSVREAALNAMRFF 496

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           +HESCGQCTPCR GT     +M R V       +  LL E++  +   +IC LG AA  P
Sbjct: 497 QHESCGQCTPCRVGTAKAAALMARPVW------DAPLLEELADCMADASICGLGQAAPNP 550

Query: 401 IQGLIKNF 408
           ++ ++K F
Sbjct: 551 LRCVLKYF 558


>gi|295677293|ref|YP_003605817.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002]
 gi|295437136|gb|ADG16306.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002]
          Length = 524

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 145/391 (37%), Positives = 214/391 (54%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L    D     +  SGLRGRGGA F  G+KW  + +       
Sbjct: 116 SIDDYVAHGGLEGLRNALRTDGDAACEALIQSGLRGRGGAAFPAGIKWRTV-RGAKAAQK 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG VIA    GA   +IYVR E+     +L+A
Sbjct: 175 YVVCNADEGDSGTFSDRLVMESDPYVLIEGMVIAGIVTGATVGYIYVRSEYPHSIATLEA 234

Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G LG S    G   ++ V  GAG+Y+CGEETA+LESLEGK+G  R KPP PA
Sbjct: 235 AIARARTAGWLGDSVLSSGQRFELFVAKGAGSYVCGEETAMLESLEGKRGIVRAKPPVPA 294

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGLYG PT +NNV ++A VP I  RGA++Y  FG   +RGT  F ++G++     VE +
Sbjct: 295 LVGLYGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGTLPFQLAGNIKRGGLVELA 354

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +T  +L++   GG   G     AV  GG     LP  Q     MDY+    +G+ +G 
Sbjct: 355 FGVTLRQLLDDFGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVIGH 412

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D ++++ +       F   ESCG+CTPCR G+   + V+ R+  G    R++ L
Sbjct: 413 GGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGVEVIARIRNGDTSTRQVQL 472

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LRDLCDTMVSGSLCAMGGMTPFPVLSALDHF 503


>gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
 gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 218/368 (59%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           +I E+K SGLRGRGGAGF TG+KW    K    +   ++V NADE +PG   DR ++  +
Sbjct: 185 VIEEMKKSGLRGRGGAGFPTGVKWESASKNPAVNGKKFIVCNADEGDPGAFMDRSLLEGD 244

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVD 160
           P++++E   IA +A+GA   +IY+R E+    + L+ A+ +   +G+LG N    G++  
Sbjct: 245 PNSVLEAMAIAGYAVGASQGYIYIRAEYPLAIDRLKIAIAQAEEAGVLGDNILGTGFNFK 304

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I + +GAGA++CGE TAL+ S+EGK+G+PR+K    +  GL+  PT+VNNVE+   VP I
Sbjct: 305 IELKYGAGAFVCGEGTALINSIEGKRGEPRMKTFSSSKHGLWQAPTSVNNVETFGNVPAI 364

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + +GA W++ +G E+++GTK+F++ G VN    VE  M  T  E++ +  GGI  G +  
Sbjct: 365 INKGADWFASYGTEDSKGTKVFALGGKVNNVGLVEVPMGTTLREIVYEIGGGIPNGKE-F 423

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AV  GG S  C+ A  +   I D+  L  +GS +G+  ++V+D +  ++        F 
Sbjct: 424 KAVQTGGPSGGCISARDLDTPI-DFKSLASIGSMMGSGGMLVLDETDCMVDISKFFLEFT 482

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCG+CTPCR G   ++ ++ ++  G   + ++  L +++  I+  ++C LG  A  P
Sbjct: 483 VDESCGKCTPCRIGNKRLLEMLTKICDGKGTEEDLADLKDLALTIKNTSLCGLGKCAPNP 542

Query: 401 IQGLIKNF 408
           +   +  F
Sbjct: 543 VLSTLDCF 550


>gi|241765112|ref|ZP_04763102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax delafieldii 2AN]
 gi|241365263|gb|EER60098.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax delafieldii 2AN]
          Length = 657

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 150/408 (36%), Positives = 220/408 (53%), Gaps = 51/408 (12%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM--------------------------- 69
           E   + ++  ++ SGLRG GGAGF  G KW  +                           
Sbjct: 234 EMDAEAVLAAMEDSGLRGLGGAGFPAGRKWRIVREQAALAARRAAPSEATAPVPGEGGGH 293

Query: 70  -------PKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
                  P+   +R     + VN DE EPGT KDR  +  +PH  +EG +IA+  +G   
Sbjct: 294 LPPGGSGPREAEERGGTAVMAVNIDEGEPGTFKDRTYLERDPHRFLEGVLIAAQVVGTEA 353

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+R E+   R  LQ A+D+  A         L +   I +  GAGAYICGEE+A++E
Sbjct: 354 VYIYLRDEYHGCRALLQKALDDLRAE----PPCPLPH---IELRRGAGAYICGEESAMIE 406

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PR++PP+ A VGL+G PT  +N E++  V  I+ RG  W++ FGR   +G +
Sbjct: 407 SIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRDIVERGPQWFASFGRNGRKGLR 466

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            FS+SG V +P        IT  ELI+++CGG+  G   L A +PGG+S   LPA  +  
Sbjct: 467 SFSVSGRVKHPGVKLAPAGITVQELIDEYCGGMLDG-HQLYAYLPGGASGGILPA-HLNN 524

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L+  G  +G+AAVIV+ +      A   +  F++HESCGQCTPCR GT     
Sbjct: 525 IPLDFDTLQPYGCFIGSAAVIVLSQHDRARDAALNVMRFFEHESCGQCTPCRVGTAKAAA 584

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +ME      A + + DLL ++++ +   +IC LG AA  PI+ + K F
Sbjct: 585 LME------APQWDADLLDDLAQVMADASICGLGQAAPNPIRCIHKYF 626


>gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 624

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 155/415 (37%), Positives = 240/415 (57%), Gaps = 7/415 (1%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSF 68
           TN Y +   SL D +  G +  ++K+L     D +++E+K SGLRGRGG GF+TG KW  
Sbjct: 148 TNGY-IDPTSLDDYIQAGGYQALNKVLSSMSPDEVVDEIKISGLRGRGGGGFATGAKWEI 206

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
             +   +   Y++ N DE +PG   DR +M   PH++IEG VIA++A+GA   +IY+R E
Sbjct: 207 TREAPGEL-KYVICNCDEGDPGAFMDRSLMEGNPHSIIEGMVIAAYAVGARQGYIYIRNE 265

Query: 129 FIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           +    ++ + A+ +    GLLG N    G+D  I +  G GA++CGE TAL+ S+EG+ G
Sbjct: 266 YPVALKNSEIAIKKAEEKGLLGKNILGTGFDFSIKISRGGGAFVCGESTALMASIEGRTG 325

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           +PR      +  GL+  PT +NNVE++A +P I+ +GA W+ G G  N++GTK+FS+ G 
Sbjct: 326 EPRANYIHTSEKGLWERPTLLNNVETLANIPLIINKGAEWFYGIGTGNSKGTKIFSLVGK 385

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V+    +E  M IT    I    GG   G     AV  GG S  CLP  ++  ++ D+D 
Sbjct: 386 VHNTGLIEVPMGITL-REIIYEIGGGIPGGKKFKAVQTGGPSGGCLPEEKLDLSV-DFDE 443

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           L   GS +G+ A+IVMD    ++        F + ESCG+C PCREG   M ++++R+++
Sbjct: 444 LSRAGSMMGSGAMIVMDEDNCMVDIARYFLSFLEEESCGKCVPCREGLKRMRQILDRIIE 503

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           G  Q  +I+LL ++S+++    +C LG +A  P+   I++F+      I Q  RC
Sbjct: 504 GKGQDEDIELLIDLSESLTMGALCGLGGSAGNPVLSTIRHFKDEYVAHI-QEKRC 557


>gi|146296868|ref|YP_001180639.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145410444|gb|ABP67448.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 598

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/411 (37%), Positives = 242/411 (58%), Gaps = 8/411 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG GF TG+KW F  K  
Sbjct: 126 INPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGGGFPTGLKWEFAAKAP 185

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+   ++YVR E+    
Sbjct: 186 GDV-KYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGSKQGYVYVRAEYPLAV 244

Query: 134 ESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
           + L+ A+++    GLLG N  LG  ++ DI +  GAGA++CGEETAL+ S+EG +G+PR 
Sbjct: 245 KRLEIAINQAREYGLLGKNI-LGTDFEFDIEIRLGAGAFVCGEETALMTSIEGHRGEPRP 303

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+  PT +NNVE+ A +P I+ +G  W++  G E ++GTK+F++ G VN  
Sbjct: 304 RPPFPAVKGLWSKPTLLNNVETYANIPVIILKGPEWFASIGTEKSKGTKVFALVGKVNNT 363

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M  T  E++E   GG   G     AV  GG S  C+PA  M   I D+D L  +
Sbjct: 364 GLIEVPMGTTVREIVEDI-GGGIPGGKKFKAVQTGGPSGGCIPASLMDTPI-DFDSLTAL 421

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  M+ +++++  G   
Sbjct: 422 GTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRRMLEILQKITSGNGT 481

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + +  RC
Sbjct: 482 EEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVKE-KRC 531


>gi|227553185|ref|ZP_03983234.1| NADH dehydrogenase (quinone) [Enterococcus faecalis HH22]
 gi|227177711|gb|EEI58683.1| NADH dehydrogenase (quinone) [Enterococcus faecalis HH22]
          Length = 394

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 208/361 (57%), Gaps = 6/361 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G   L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++  L ++  +
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTH 388

Query: 385 I 385
           +
Sbjct: 389 V 389


>gi|39937320|ref|NP_949596.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris CGA009]
 gi|39651178|emb|CAE29701.1| NADH-ubiquinone dehydrogenase chain F [Rhodopseudomonas palustris
           CGA009]
          Length = 428

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 148/356 (41%), Positives = 207/356 (58%), Gaps = 11/356 (3%)

Query: 60  FSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115
           F T  KW FM +  S+R      YL VN DE+EPG+ KDR +M   PH LIEG  IA++A
Sbjct: 60  FPTANKWRFM-RTGSERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYA 118

Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGE 174
           IGA    I VR E+     +L  A+ E  A+GLLG +    G+D+ + VH  AG YI GE
Sbjct: 119 IGATEVIILVRDEYRAAAAALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGE 178

Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234
           ETAL+ ++EG++  PR +PP+PA  GL+G PTTVNNVE+++ VP+I+  GA WY      
Sbjct: 179 ETALIAAIEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGAEWYRSLSFT 238

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
           +  GTKL+ ISG V  P  +E  M  T  EL+ +  GGIR G   LLA  PGG +     
Sbjct: 239 DEGGTKLYGISGCVERPQLIEAPMGSTARELLHR-AGGIRNG-RGLLAFQPGGGATAFFE 296

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
             ++    +D+   K+ GS LGT A+IV+D     + AI R   FY  ESCG CTPCR+G
Sbjct: 297 KAEL-DVPLDFTSTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDG 355

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYE--VSKNIEGRTICALGDAAAWPIQGLIKNF 408
             W+ ++++ L  G   + +I++L++        GR+ C L   A  P++  ++ F
Sbjct: 356 LPWVSKLLDALEAGKGTQGDIEVLHQHVALSGPSGRSYCDLNTGALTPLRSGLERF 411


>gi|15890286|ref|NP_355958.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens
           str. C58]
 gi|15158483|gb|AAK88743.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens
           str. C58]
          Length = 518

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 145/391 (37%), Positives = 217/391 (55%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  +      ++K +      I+ +V  SGLRGRGGAGF TG+KW  +    +D+  
Sbjct: 117 SLEDYRNYQGMKGLEKAVTMEPLAIVAQVTESGLRGRGGAGFPTGIKWKTVADARADQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA   FIY R E+    + ++ 
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLAVGATKGFIYTRSEYPYAIKVMEK 235

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++     G+LGS+    G   D+ V  GAGAY+CGEET+LL SLEGK+G  R KPP PA
Sbjct: 236 AIEIARREGILGSSVLGSGRAFDMEVRMGAGAYVCGEETSLLNSLEGKRGTVRAKPPLPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNV S+A +P I+ RGA++Y  FG   + GT    ++G++ Y    E +
Sbjct: 296 LQGLFGKPTVVNNVISLASIPVIMDRGAAFYRDFGVGRSHGTIPIQLAGNIRYGGLYETA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +T  +L+    GG   G   + AV  GG      P   +   I DY+     G  +G 
Sbjct: 356 FGLTLGQLVNDIGGGTITGRP-VKAVQVGGPLGAYFPV-SLFDTIFDYEAFTAAGGLIGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D + D++        F   ESCG+CTPCR G+   +  ++++  GI +++   L
Sbjct: 414 AGIVVFDDTADMLHQARFALEFCAVESCGKCTPCRIGSTRGVETVDKIALGIEREKNTAL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++ + ++  ++CALG    +P+   +++F
Sbjct: 474 LEDLCETMKFGSLCALGGFTPYPVMSALRHF 504


>gi|163846760|ref|YP_001634804.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl]
 gi|222524574|ref|YP_002569045.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl]
 gi|163668049|gb|ABY34415.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl]
 gi|222448453|gb|ACM52719.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl]
          Length = 535

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/377 (38%), Positives = 224/377 (59%), Gaps = 8/377 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  +  SGLRGRGGAG+ TG+KW+ + K   +R  +++ NADE +PG   DR ++  +P
Sbjct: 156 VIQMITRSGLRGRGGAGYPTGLKWATVAKSPGER-KFVICNADEGDPGAFMDRSVLESDP 214

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDV 159
           H ++EG  IA++A+GA   FIYVRGE+    E LQ A+ +    GLLG+    S   + V
Sbjct: 215 HLVLEGMAIAAYAVGAEQGFIYVRGEYPLAIERLQKAIVQARRLGLLGAQIFESGFNFRV 274

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI V  GAGA++CGEETAL+ S+EG++GQPR +PP+PA  GL+G PT +NNVE+ A +  
Sbjct: 275 DIRV--GAGAFVCGEETALIASIEGRRGQPRPRPPYPAESGLWGMPTLINNVETFANISA 332

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  G  W+   G E ++GTK+F+++G +     +E  M IT  E++E    G   G   
Sbjct: 333 IIEHGPEWFRQIGTEQSKGTKVFALTGKIRNTGLIEVPMGITLREIVEDIGDGTPDGTP- 391

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           + AV  GG S  C+PA      + DY+ L  +GS +G+  ++VMD  T+++        F
Sbjct: 392 VKAVQTGGPSGGCIPASLFDTPV-DYESLAAVGSIMGSGGMVVMDEHTNMVDVARFYMEF 450

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
            K ESCG+C PCR GT  +  ++ +L  G A + ++  +  + + +   ++C LG +A  
Sbjct: 451 CKDESCGKCIPCRVGTVQLFNLLTKLRNGQAGESDLQTIEALCELMRETSLCGLGQSAPN 510

Query: 400 PIQGLIKNFRPLIEERI 416
           P+   +  FR   E+ I
Sbjct: 511 PVLSTLHYFRHEYEQLI 527


>gi|90416713|ref|ZP_01224643.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90331466|gb|EAS46702.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 515

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/391 (36%), Positives = 216/391 (55%), Gaps = 4/391 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR-PH 78
           L +  +   +  ++  L+     I+++VK SGLRGRGGA F  G+KW  +     D    
Sbjct: 110 LDNYQALNGFKGLNNALKMTGQQIVDQVKDSGLRGRGGAAFPAGIKWQTVHDAGKDGCQK 169

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG ++A  A+GA   +IY+R E+    + L  
Sbjct: 170 YIVCNADEGDSGTFADRLVMEADPYQLIEGMIVAGLAVGATQGYIYLRSEYPVAHKLLNI 229

Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+D   A+  LG N +  G    + V  GAGAYICGEET+LLESLEGK+G  R KPP PA
Sbjct: 230 AIDRAIAANFLGENIQGSGKTFYLEVRLGAGAYICGEETSLLESLEGKRGMVRAKPPLPA 289

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNV ++A + TIL +GA  Y  FG   +RGT    ++G++     +E +
Sbjct: 290 IEGLFGMPTVVNNVLTLAAISTILEQGADSYQNFGMGRSRGTLAIQLAGNIKRGGLIELA 349

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +T  E++E +  G   G   + A+  GG     LP  Q     MDY+    + + +G 
Sbjct: 350 FGVTLREVVEDYGQGTYSGRP-IRAIQVGGPLGAFLPESQWD-TPMDYEAFAAIKAMIGH 407

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+         F   ESCG+CTPCR G+   + V++R+V    +   + L
Sbjct: 408 GGIVVFDDTADMAAQARFAMEFCVVESCGKCTPCRIGSVRGVEVIDRIVANENRDNNLIL 467

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L+E+   +E  ++CA+G    +P++  + +F
Sbjct: 468 LHELCDTMEFGSLCAMGGMTPYPVRSALAHF 498


>gi|289523903|ref|ZP_06440757.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502559|gb|EFD23723.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 986

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 163/422 (38%), Positives = 245/422 (58%), Gaps = 15/422 (3%)

Query: 4   DQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFS 61
           +Q RI     GL   + + + ++R  +  + K L K     +I EVK+S LRGRGG GF 
Sbjct: 57  NQTRILLRNCGLINPERIEEYIAREGYQGLAKALYKMSPQHVIEEVKSSNLRGRGGGGFP 116

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K  ++ P Y++ NADE +PG   DR ++  +PH LIEG +IA +AIGA   
Sbjct: 117 TGVKWDLTRKNPAE-PKYVICNADEGDPGAFMDRSLIEGDPHALIEGMLIAGYAIGAQKG 175

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179
           FIY R E+    + L+ A+D+    GLLG    LG  ++ DI +  GAGA++CGEETAL+
Sbjct: 176 FIYCRAEYPLAIQRLKIAIDQAKEYGLLGEGI-LGSNFNFDIEIKEGAGAFVCGEETALI 234

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG++G+PR +PPFPA  GL+G PT +NNV+S A VP I+  G  W+S  G E ++GT
Sbjct: 235 ASIEGRRGEPRPRPPFPAEKGLWGKPTNINNVKSYAFVPQIILNGHEWFSSIGTEKSKGT 294

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
            +F+++G V     +E  M  T  E+I     G+        AV  GG    CLP+  + 
Sbjct: 295 AVFALTGKVKNTGLLEIPMGTTIGEIIFDVGEGVAKDR-QFKAVQTGGPLGGCLPSDALN 353

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             + D+D L   G+ +G+  +IV+D +T +++       F   ESCGQCTPCR G   M+
Sbjct: 354 LPV-DFDSLTASGALMGSGGMIVVDETTCMVELARFFLQFAVAESCGQCTPCRVGGNKML 412

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ R+ KG  +  ++D+L E++K ++  ++CALG  A  P+   ++ FR       D+Y
Sbjct: 413 EILMRITKGQGKMEDLDMLEEIAKFMKKASLCALGQGAPNPVLSTLRYFR-------DEY 465

Query: 420 HR 421
            R
Sbjct: 466 ER 467


>gi|134096580|ref|YP_001101655.1| NAD dependent formate dehydrogenase subunit beta: fdsB
           [Herminiimonas arsenicoxydans]
 gi|133740483|emb|CAL63534.1| NAD-dependent formate dehydrogenase beta subunit [Herminiimonas
           arsenicoxydans]
          Length = 525

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 147/409 (35%), Positives = 222/409 (54%), Gaps = 5/409 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      SL D ++   +  + K +      I+ EV  SGLRGRGGA F
Sbjct: 107 LKKQERLQFVRVGITDPVSLDDYLAHEGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAF 166

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D+  Y+  NADE + GT  DR +M  +P  LIEG  IA  A+ A  
Sbjct: 167 PTGIKWKTVLGAEADQ-KYIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVNATE 225

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L  A+    A+G LG N    G   ++ V   AGAY+CGEETA+L
Sbjct: 226 GYIYVRSEYPHSIANLNEAIVAANAAGYLGKNILGSGRTFNLQVRKAAGAYVCGEETAML 285

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV S++ VP IL RGA++Y  FG   +RGT
Sbjct: 286 ESIEGKRGLVRAKPPLPALQGLFGKPTVINNVISLSAVPLILSRGATFYKDFGMGRSRGT 345

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ Y   VE++  +T  EL+    GG   G   + AV  GG     +P   + 
Sbjct: 346 LPMQLAGNLKYGGLVEKAFGVTLRELLYDFGGGSESGRP-IRAVQVGGPLGAYMPE-SLF 403

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+    + S +G   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 404 DTPFDYEAFAAVASTVGHGGLVAFDDTVDMAKQARYAMHFCAVESCGKCTPCRIGSTRGV 463

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            VM++++    + ++I LL ++   +   ++CA+G+   +P+   + +F
Sbjct: 464 EVMDKIIANQNRPQQIHLLRDLCDVMVTGSLCAMGNMTPFPVLSALNHF 512


>gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 598

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 139/351 (39%), Positives = 207/351 (58%), Gaps = 4/351 (1%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW F  K   D   Y+  NADE +PG   DR ++  +PH +IE   IA++A GA+
Sbjct: 172 FPAGLKWEFTAKAEGDE-KYVACNADEGDPGAFMDRSVLEGDPHVVIEAMAIAAYAAGAN 230

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+R E+    E L+ A+ +   +GLLG +    G+D ++ +  GAGA++CGEETAL
Sbjct: 231 RGYVYIRAEYPIAVERLEIAIGQARENGLLGKDIFGTGFDFELEIRLGAGAFVCGEETAL 290

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR +PPFPA  G++  PT +NNVE+ A VP I+  GA W++  G E ++G
Sbjct: 291 INSIEGKRGMPRPRPPFPAQKGIWNKPTLLNNVETYANVPRIILNGAEWFASIGTEKSKG 350

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F++ G +N    VE +M  T  E+I    GGI  G     AV  GG S  C+ A  +
Sbjct: 351 TKVFALGGKINNTGLVEIAMGTTLKEVIYDIGGGIPDG-KAFKAVQTGGPSGGCITAEHL 409

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              I DYD L E+GS +G+  +IVMD    ++        F   ESCG+CTPCREGT  M
Sbjct: 410 DTPI-DYDNLIELGSMMGSGGMIVMDEDNCMVDIARFFLDFTVEESCGKCTPCREGTKRM 468

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + +++ + +G     ++D L  ++K I+  ++C LG  A  P+   +K FR
Sbjct: 469 LELLDIISEGKGTVADLDKLESLAKTIKSSSLCGLGQTAPNPVLSTLKYFR 519


>gi|303238581|ref|ZP_07325115.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302593979|gb|EFL63693.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 574

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/396 (36%), Positives = 226/396 (57%), Gaps = 5/396 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  + + ++++ G ++ +   L K  RD +I  VK SGLRGRGG GF TG+KW    K  
Sbjct: 152 INPEDIHEAIAVGAYEAMGMALTKMSRDEVIEVVKKSGLRGRGGGGFPTGLKWEITKKQ- 210

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                +++ NADE +PG   DR I+  +PH++IE   I ++AIGA    +Y+R E+    
Sbjct: 211 EGAVKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGADTGIVYIRAEYPLAV 270

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             L  A+ +    G+LG N     +  D+ + +GAGA++CGEETAL+ S EGK+G+P  K
Sbjct: 271 ARLNIAIKQARELGVLGKNIFGTDFSFDVTLKYGAGAFVCGEETALINSCEGKRGEPDYK 330

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PP+PA  G +G PT VNNVE+ A +P I+ RGA W++  G E ++GTK+F+++G +N   
Sbjct: 331 PPYPAEEGYWGHPTCVNNVETFANIPVIITRGAEWFASMGSEKSKGTKVFALAGKINNVG 390

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            VE  M IT  E+I    GGI GG     AV  GG S   L   ++   I DYD L  +G
Sbjct: 391 LVEVPMGITLREIIYDIGGGISGG-KRFKAVQTGGPSGGVLTEKELDTPI-DYDSLLAVG 448

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S +G+  +IVMD   +++        F   E+CG+C P R GT  +  ++  + +G A  
Sbjct: 449 SMMGSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCAPGRIGTKRLFEMLHNITQGKATM 508

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            ++D + +++  I+  ++C L   A  P+   +K+F
Sbjct: 509 ADLDAMKQLAYLIKDSSLCGLCQTAPNPVISTMKHF 544


>gi|212696952|ref|ZP_03305080.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676040|gb|EEB35647.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 526

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 145/399 (36%), Positives = 225/399 (56%), Gaps = 8/399 (2%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G++     I +  R  II+ +K SGLRGRGGAGF TG KW    K  +D   Y++ NADE
Sbjct: 68  GYFALNKAIFDLDRKEIIDIIKDSGLRGRGGAGFPTGRKWEAAFKQDTD-IKYIICNADE 126

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR ++  +PH+++E   I + AIG+   +IYVR E+ +  +SLQ A+ +    
Sbjct: 127 GDPGAFMDRSVLEFDPHSVLEAMAICARAIGSKQGYIYVRAEYPKAVKSLQNAIKQAREY 186

Query: 147 GLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            LLG N   S   +D+D+    GAGA++CGE TAL+ES+EGK+G PR K       GL+G
Sbjct: 187 NLLGENIMGSDFSFDIDL--RLGAGAFVCGEGTALMESIEGKRGMPRNKEFRTTVKGLWG 244

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT +NNVE+ A +  I+ +G+SW+  FG E + GTK+F++ G V     VE  M  + +
Sbjct: 245 KPTVINNVETFANIAQIINKGSSWFRSFGTEKSPGTKVFALVGKVKESGLVEVEMGTSIN 304

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           +++     GI+       AV  GG S  C+P  ++     D++ LKE+GS +G+  ++VM
Sbjct: 305 KIVYDIGLGIQND-KKAKAVQTGGPSGGCIPT-KLFDTACDFESLKEIGSIMGSGGMVVM 362

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
           D    ++        F   ESCG+CTPCR G   +  +++ L KG A +  ++ L E+SK
Sbjct: 363 DEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKRLFEMLDDLTKGKANEETLEKLEELSK 422

Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +   ++C LG ++  PI   +  F+   +  + +   C
Sbjct: 423 IVSETSLCGLGQSSPNPIISTMYYFKDEYQAHVGENKTC 461


>gi|53804300|ref|YP_113850.1| formate dehydrogenase subunit beta [Methylococcus capsulatus str.
           Bath]
 gi|53758061|gb|AAU92352.1| formate dehydrogenase, beta subunit [Methylococcus capsulatus str.
           Bath]
          Length = 516

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 224/409 (54%), Gaps = 5/409 (1%)

Query: 2   LTDQDRIFTNLYGLQGKS-LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q+R+     G+     L D ++ G +  +   L      I+ EV ASGLRGRGGA F
Sbjct: 98  LKNQERLTFARVGITDPVCLEDYLAHGGYRGLRNALAMEPAAIVEEVTASGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    + +  Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 158 PTGIKWKTVLNAPAGQ-KYVVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGLAVGATQ 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+     +L  A++    +G LG +    G    + V  GAGAY+CGEETALL
Sbjct: 217 GYIYLRIEYPHAGVALNQAIEAAIQAGYLGDDILGSGKRFQLEVRLGAGAYVCGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +G  +Y+ +G   +RGT
Sbjct: 277 ESLEGKRGMVRFKPPLPAIEGLFGQPTVINNVISLASVPIILDKGGKYYADYGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V  P  +E++  +T  EL+  + GG   G   + AV  GG     +P  Q  
Sbjct: 337 LPLQLAGNVKRPGLIEKAFGMTLRELLYDYGGGSASGRP-IRAVQVGGPLGSYMPESQFD 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    + + LG   V+V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 396 -TPLDYESFSAIWAVLGHGGVVVFDDTVDMAKMARYAMEFCALESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++R++    + + + LL ++   +   ++CALG    +P+   + +F
Sbjct: 455 EVIDRIIDDRDRAKNLALLRDLGDTMLAGSLCALGGMTPYPVLSALNHF 503


>gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 625

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 150/419 (35%), Positives = 237/419 (56%), Gaps = 6/419 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
            +  Q RI   N      +SL++ ++ G +  ++K + E   D +I++V  SG+RGRGG 
Sbjct: 139 FIAKQTRIVLKNCGKFDAESLNEYIASGGFQALEKAMFEMDPDLVIDQVDKSGIRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW  + +  +D  HY+V N DE +PG   D  +M  +P+ LIEG ++A++A+ A
Sbjct: 199 GFPAGKKWIQVARQ-ADPVHYVVCNGDEGDPGAFMDGSVMEGDPYRLIEGMMLAAYAVRA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+ +    L+ A+      GLLG +    G+   + ++ GAGA++CGE +A
Sbjct: 258 QHGYIYVRAEYPQSVARLKHAIAVLEEVGLLGDDILGTGFSFHMHINRGAGAFVCGEGSA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+ A +P I+ +GA WY   G E + 
Sbjct: 318 LTASIEGNRGMPRVKPPRTVEQGLWAKPTVLNNVETYANIPEIILKGADWYRSIGTEGSP 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FS++G +     +E  M  T  E+I    GG++ G     AV  GG S  CL    
Sbjct: 378 GTKTFSLTGSIENTGLIEVPMGTTLREIIFDIGGGLKSGA-AFKAVQIGGPSGGCLTEEH 436

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D +K+ G+ +G+  ++VMD  T +++       F + ESCG+C PCR GT  
Sbjct: 437 LD-VPLDFDSVKKYGAIVGSGGLVVMDEHTCMVEVARFFMGFTQRESCGKCGPCRIGTKR 495

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M+ ++ER+V G  +  ++D L  +   I+ R++C LG +A  P+   ++NFR    E I
Sbjct: 496 MLEILERIVDGKGEVEDLDKLEHLGNFIKDRSLCGLGKSAPLPVLSTLRNFRDEYVEHI 554


>gi|289612446|emb|CBI60107.1| unnamed protein product [Sordaria macrospora]
          Length = 175

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/161 (75%), Positives = 136/161 (84%)

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           MSI F ELIEKHCGG+RGGWDNLL VIPGGSSVP + A  +  A MD+DGLK +GSGLGT
Sbjct: 1   MSIPFRELIEKHCGGVRGGWDNLLCVIPGGSSVPLVKAEHIIDAPMDFDGLKAVGSGLGT 60

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGTGWM RVMERL  G A   EID+
Sbjct: 61  AAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGTGWMWRVMERLRTGDADISEIDM 120

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L +V+K +EG TICALGDAAAWPIQGLIKNFRP IE RI++
Sbjct: 121 LQQVTKQVEGHTICALGDAAAWPIQGLIKNFRPEIERRINE 161


>gi|253998889|ref|YP_003050952.1| NADH dehydrogenase (quinone) [Methylovorus sp. SIP3-4]
 gi|253985568|gb|ACT50425.1| NADH dehydrogenase (quinone) [Methylovorus sp. SIP3-4]
          Length = 516

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 222/409 (54%), Gaps = 5/409 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    SL+D ++   +  +   L      I+ +V  SGLRGRGGA F
Sbjct: 98  LKQQERLTFARVGITDPVSLTDYLAHDGYRGLQNALALQPAEIVQQVTDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D+  Y+V NADE + GT  DR IM  +P  LIEG  IA+ A+GA  
Sbjct: 158 PTGIKWKTVHDCKADQ-KYIVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAALAVGATQ 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+      L  A+        LG N    G+  ++ V   AGAY+CGEET+LL
Sbjct: 217 GYIYLRSEYPHALAVLNEAIQHAREKHYLGPNILGSGHAFELEVRRAAGAYVCGEETSLL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S A VP IL +G ++Y  +G   +RGT
Sbjct: 277 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISFASVPIILDKGGAFYRDYGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE++  +T  +L+    GG   G   + AV  GG     LP  Q  
Sbjct: 337 LPIQLAGNIKHGGLVEKAFGVTLRQLLYDFGGGSATGRP-IRAVQVGGPLGAYLPESQFD 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + LG   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 396 -TPLDYEEFSKLWAVLGHGGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            VM+++++G    + I L+ ++S  +   ++CALG    +P+   I +F
Sbjct: 455 EVMDKIMQGRDHAQNIALVRDLSDTMLNGSLCALGGMTPYPVLSAINHF 503


>gi|83312492|ref|YP_422756.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Magnetospirillum magneticum AMB-1]
 gi|82947333|dbj|BAE52197.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Magnetospirillum magneticum AMB-1]
          Length = 627

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 211/380 (55%), Gaps = 18/380 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99
           +++ VK SGLRGRGGAGFSTG KW F        PH   Y+V NADE EPGT KDR ++ 
Sbjct: 212 VLDSVKESGLRGRGGAGFSTGQKWDFCRAAVGTGPHAAHYVVCNADEGEPGTFKDRVLLA 271

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGY 157
                + EG  ++ + IGA    +Y+RGE+    E L A +++  A+ LLG +   + G+
Sbjct: 272 SYAGLVFEGMTVSGYVIGARKGIVYLRGEYRYLLEPLNAVLEKRRAAKLLGKSILGRTGF 331

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D DI VH GAGAY+CGEETALLESLEGK+G PR +PPFP   G  G PT VNNVE++A  
Sbjct: 332 DFDIEVHLGAGAYVCGEETALLESLEGKRGVPRKRPPFPVTAGYLGQPTAVNNVETLASA 391

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             I  +GA+WY   G   + GTK+ SISG    P   E    +   +++   C    G  
Sbjct: 392 ALIAAKGAAWYKSIGTPKSAGTKILSISGDCERPGIYEYPYGVKVSQVLAD-C----GAR 446

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
           D     I G S + C+   +  G  + ++ +   GS       ++ D + D+ +     +
Sbjct: 447 DTQACQIAGASGL-CVAPNEF-GRRIAFEDIPTGGS------FMIFDNTRDMFQVARNFA 498

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F+ HESCG CTPCR GT  +   M+++ +G   + +I+ ++ V + ++  + C LG  A
Sbjct: 499 HFFVHESCGFCTPCRVGTTLLANAMDKIDEGHGGEYDINDIWRVIRTLKTASHCGLGQTA 558

Query: 398 AWPIQGLIKNFRPLIEERID 417
              +   ++ FRP  E R++
Sbjct: 559 GNAVADTLQKFRPSYELRLN 578


>gi|313200988|ref|YP_004039646.1| NADH dehydrogenase (quinone) [Methylovorus sp. MP688]
 gi|312440304|gb|ADQ84410.1| NADH dehydrogenase (quinone) [Methylovorus sp. MP688]
          Length = 516

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 222/409 (54%), Gaps = 5/409 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    SL+D ++   +  +   L      I+ +V  SGLRGRGGA F
Sbjct: 98  LKQQERLTFARVGITDPVSLTDYLAHDGYRGLQNALALQPAEIVQQVTDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D+  Y+V NADE + GT  DR IM  +P  LIEG  IA+ A+GA  
Sbjct: 158 PTGIKWKTVHDCKADQ-KYIVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAALAVGATQ 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+      L  A+        LG N    G+  ++ V   AGAY+CGEET+LL
Sbjct: 217 GYIYLRSEYPHALAVLNEAIQHAREKHYLGPNILGSGHAFELEVRRAAGAYVCGEETSLL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S A VP IL +G ++Y  +G   +RGT
Sbjct: 277 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISFASVPIILDKGGAFYRDYGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE++  +T  +L+    GG   G   + AV  GG     LP  Q  
Sbjct: 337 LPIQLAGNIKHGGLVEKAFGVTLRQLLYDFGGGSATGRP-IRAVQVGGPLGAYLPESQFD 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + LG   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 396 -TPLDYEEFSKLWAVLGHGGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            VM+++++G    + I L+ ++S  +   ++CALG    +P+   I +F
Sbjct: 455 EVMDKIMQGRDHAQNIALVRDLSDTMLNGSLCALGGMTPYPVLSAINHF 503


>gi|73538478|ref|YP_298845.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
 gi|72121815|gb|AAZ64001.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
          Length = 580

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 143/366 (39%), Positives = 207/366 (56%), Gaps = 16/366 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  ++ SGLRG GGAGF TG KW  +       P  + VN DE EPGT KDR  +  +P
Sbjct: 216 VICTMEDSGLRGLGGAGFPTGRKWRIVSG--EPAPRLMAVNIDEGEPGTFKDRVYLERDP 273

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H  +EG +IA+        +IY+R E+   R  L  A+ E +    +    +      I 
Sbjct: 274 HRFLEGMLIAAAVTQVAAIYIYLRDEYAGCRAILTQALQELHDDPPVPDLPR------IE 327

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A VGL+G PT  +N E++  V  IL 
Sbjct: 328 LRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQVGLFGRPTLEHNFETLYWVRDILE 387

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
           +GA W++  GR   +G + FS+SG V  P        IT  ELI+++CGG+  G     A
Sbjct: 388 KGAEWFASQGRHGRKGLRSFSVSGRVRQPGVHLAPAGITVRELIDEYCGGMIDG-HTFYA 446

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
            +PGG+S   LPA  M    +D+D L+  G  +G+AA+IV+      + A   L  F+KH
Sbjct: 447 YLPGGASGGILPA-SMGNIPLDFDTLQPHGCFIGSAAIIVLSDHDSAVAAARNLMHFFKH 505

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ESCGQCTPCR GT   + ++ +       + ++  L ++S  +   +IC LG AA  P+ 
Sbjct: 506 ESCGQCTPCRVGTAKALDLIRQ------PQWDLPALEDLSAVMRDASICGLGQAAPNPVD 559

Query: 403 GLIKNF 408
            +I+ F
Sbjct: 560 CVIRYF 565


>gi|330720274|gb|EGG98633.1| NAD-dependent formate dehydrogenase beta subunit [gamma
           proteobacterium IMCC2047]
          Length = 526

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/394 (37%), Positives = 218/394 (55%), Gaps = 6/394 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--VCSDR 76
           S+      G +  ++K L +    I++ VK SGLRGRGGA F  G+KW  +    +  + 
Sbjct: 126 SIEAYQQHGGFVGLEKALAQSGQAIVDAVKESGLRGRGGAAFPAGIKWQTVHDCGLEEES 185

Query: 77  PH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           P  Y+V NADE + GT  DR +M  +P  LIEG  IA  A+GA   +IY+R E+   ++ 
Sbjct: 186 PQKYIVCNADEGDSGTFADRMVMEGDPLMLIEGMTIAGLAVGAEQGYIYLRSEYPVAQQI 245

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  A+   Y SG LG+N    G +  + V  GA AYICGEET+LLESLEGK+G  R KPP
Sbjct: 246 LNEAMANAYESGFLGNNIQDSGRNFHLEVRMGAAAYICGEETSLLESLEGKRGMVRFKPP 305

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            PA  GL+G PT VNNV ++A VP IL  GA  Y+ +G   +RGT  F ++G++     +
Sbjct: 306 LPAIEGLFGKPTVVNNVLTLAAVPFILAEGAKAYADYGMGRSRGTLPFQLAGNIQQGGLI 365

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E +   T  EL+++  GG   G   + A+  GG     LP  Q  G  +DY+    + + 
Sbjct: 366 ELAFGTTLRELLDEFGGGTASG-KPMRAIQVGGPLGAYLPESQW-GTELDYEAFAAIDAV 423

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG   ++V D S D+ +       F   ESCG+CTPCR G+   + V++++ +G  +   
Sbjct: 424 LGHGGIVVFDDSVDMAEQARFSMEFCVAESCGKCTPCRVGSTRGVEVIDKIRQGENRVEN 483

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             LL ++ + +   ++CA+G    +P+   + +F
Sbjct: 484 HILLKDLCETMLHGSLCAMGGMTPFPVMSAVNHF 517


>gi|257092625|ref|YP_003166266.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045149|gb|ACV34337.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 608

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 144/388 (37%), Positives = 209/388 (53%), Gaps = 22/388 (5%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDRP--HYLVVNADESEPGTC 92
           + +G + ++ E+K S LRGRGGAGF+T +KW S     C   P   Y+V NADE EPGT 
Sbjct: 194 IARGPEAMLAEMKVSNLRGRGGAGFTTYIKWESARRATCRHAPPARYVVCNADEGEPGTF 253

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS- 151
           KDR ++      + +G  +A   IGA    +Y+RGE+     +LQ  ++    +GLLG  
Sbjct: 254 KDRVLLTSHADLVFDGMSVAGVTIGAEKGLLYLRGEYAYLLPALQENLERRRRNGLLGPA 313

Query: 152 ---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
               + L +D+DI  H GAGAY+CGEETALLESLEGK+G PR++PPFP + G  G PT V
Sbjct: 314 LCGRADLAFDIDI--HLGAGAYVCGEETALLESLEGKRGVPRIRPPFPVHAGYRGQPTVV 371

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           NNVE++     I  RG +W++G G + + GTKL SISG V  P   E    +   +++  
Sbjct: 372 NNVETLCKAALIAVRGGAWFAGLGTKQSTGTKLLSISGDVESPGIYEYPFGVAVSQVLND 431

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CG       N  AV   G S  CL   +    I  ++ +   G      A +V     D
Sbjct: 432 -CGA-----GNAQAVQVSGPSGSCLAMHEFSRRIA-FEDVPTAG------AFMVFGAHRD 478

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
           + +     + F+ HESCG CTPCR GT  +   M+++  G   + +I  ++++ + +   
Sbjct: 479 MFEVARNFAHFFAHESCGFCTPCRVGTSLVANCMDKIANGRGSQYDISEIFKIHRLLHAA 538

Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERI 416
           + C LG  A  P+   +  FRP  E R+
Sbjct: 539 SHCGLGQTACNPLFDTLNKFRPAYERRL 566


>gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
 gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
          Length = 635

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 150/386 (38%), Positives = 229/386 (59%), Gaps = 8/386 (2%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           +G++   D +L K    +I+ +K SGLRGRGG GF TG+KW F  K  SD   Y+V NAD
Sbjct: 176 KGYFALADCLLNKQPLDVIDIIKRSGLRGRGGGGFPTGLKWEFAHKQKSDI-KYVVCNAD 234

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR IM  +PH+++E   +  ++I +    +Y+R E+      L+ A+++   
Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSISSSKGLVYIRAEYPLAINRLRIAINQARQ 294

Query: 146 SGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            GLLG +  LG  +  DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G
Sbjct: 295 YGLLGDHI-LGTEFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N    +E  M  T  
Sbjct: 354 KPTNVNNVETLANIPIILTKGAEWFAAIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVM
Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAAGSMMGSGGMIVM 471

Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           D   D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G   ++++D L  + 
Sbjct: 472 DED-DCMVSVSRFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGRGTEKDLDTLATLG 530

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408
           + I+   +C LG  +  P+   + NF
Sbjct: 531 QVIKDTALCGLGQTSPNPVLSTLDNF 556


>gi|294810790|ref|ZP_06769436.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b]
 gi|294441978|gb|EFG10799.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b]
          Length = 577

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 150/379 (39%), Positives = 226/379 (59%), Gaps = 8/379 (2%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
            G++   D +L K    +I+ +K SGLRGRGG GF TG+KW F  K  SD   Y+V NAD
Sbjct: 176 EGYFALADCLLNKQPTDVIDIIKRSGLRGRGGGGFPTGLKWEFANKQQSDV-KYVVCNAD 234

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR IM  +PH+++E   +  ++IG+    +Y+R E+      L+ A+++   
Sbjct: 235 EGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGSTKGLVYIRAEYPLAINRLKTAINQARE 294

Query: 146 SGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            GLLG +  LG D   DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G
Sbjct: 295 YGLLGDHI-LGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLG 353

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT VNNVE++A +P IL +GA W++  G E ++GTK+F+++G +N    +E  M  T  
Sbjct: 354 KPTNVNNVETLANIPIILTKGADWFATIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E+I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVM
Sbjct: 414 EVIYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLSAGSMMGSGGMIVM 471

Query: 324 DRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           D   D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G   ++++D L  + 
Sbjct: 472 DED-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGKGTEKDLDTLATLG 530

Query: 383 KNIEGRTICALGDAAAWPI 401
           + I+   +C LG  +  P+
Sbjct: 531 QVIKDTALCGLGQTSPNPV 549


>gi|332285353|ref|YP_004417264.1| NAD-dependent formate dehydrogenase beta subunit [Pusillimonas sp.
           T7-7]
 gi|330429306|gb|AEC20640.1| NAD-dependent formate dehydrogenase beta subunit [Pusillimonas sp.
           T7-7]
          Length = 523

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 151/409 (36%), Positives = 228/409 (55%), Gaps = 5/409 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    S+SD  +   +  ++K L      I+++V  SGLRGRGGA F
Sbjct: 101 LKRQERLTFARVGITDPLSISDYQAHEGFKGLEKALSLPPAAIVDQVTESGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +++  Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+ A  
Sbjct: 161 PTGIKWKTVLATEAEQ-KYIVCNADEGDSGTFSDRMLMEGDPYALIEGMAIAGLAVQATY 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG+N +  G+  D+ V   AGAYICGEET+LL
Sbjct: 220 GYIYVRSEYPYAITALEAAIVRAREAGWLGANIRNSGHAFDLEVRTAAGAYICGEETSLL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL RGA++Y  +G   + GT
Sbjct: 280 ESLEGKRGLVRAKPPLPAIKGLFGKPTVINNVISLASVPIILARGAAFYRDYGMGRSTGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE++  +T  EL+ +  GG   G   L AV  GG     LP  Q  
Sbjct: 340 LPFQLAGNLKQGGLVEKAFGLTLRELLYEFGGGSASG-KPLRAVQVGGPLGAYLPESQWD 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             I DY+    + + +G   ++  D + D+         F   ESCG+CTPCR G     
Sbjct: 399 VPI-DYEAYAAIKAMVGHGGLVAFDDTADMSSLAEYAMEFCAIESCGKCTPCRIGAVRGA 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V+ ++ +   ++ ++ LL+E+   +   ++CALG    +P+   +++F
Sbjct: 458 EVISKIRRNEQREAQVVLLHELCDTMLAGSLCALGGMTPYPVLSALEHF 506


>gi|325274757|ref|ZP_08140793.1| NADH dehydrogenase (quinone) [Pseudomonas sp. TJI-51]
 gi|324100101|gb|EGB97911.1| NADH dehydrogenase (quinone) [Pseudomonas sp. TJI-51]
          Length = 519

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 153/410 (37%), Positives = 221/410 (53%), Gaps = 7/410 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           T Q  +F      +  SL D  + G +  ++  +      ++  V  SGLRGRGGA F  
Sbjct: 100 TQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAFPA 159

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW  +    + +  Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA   +
Sbjct: 160 GIKWRTVRDAGAGQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADMGY 218

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+      L+ A     A+G LG+N +  G   ++ V  GAGAYICGEETALLES
Sbjct: 219 IYVRSEYPDAIRVLEQAFAIARAAGYLGANVAGSGRAFELQVRVGAGAYICGEETALLES 278

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT  
Sbjct: 279 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTMP 338

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ++G+V +   VE +  +T  EL+E + GG   G   L A   GG     +P       
Sbjct: 339 FQLAGNVRHGGLVERAFGLTLRELVEGYGGGTASG-RPLKAAQVGGPLGAWVPPSHFD-T 396

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+    MG+ LG   V+V D + ++         F   ESCG+CTPCR G+   M V
Sbjct: 397 PLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGMEV 456

Query: 362 MERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++RL+         D   LL ++   ++  ++CA+G   A+P+   +K F
Sbjct: 457 VDRLIASSETGERHDHALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYF 506


>gi|241206610|ref|YP_002977706.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860500|gb|ACS58167.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 518

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 148/402 (36%), Positives = 217/402 (53%), Gaps = 10/402 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G    + + +      I+ E+  SGLRGRGGAGF TG+KW  + +   +R  
Sbjct: 117 SLGDYEAHGGLAGLRRAVSMTPVDIVKEITDSGLRGRGGAGFPTGIKWKTVLEAAGER-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA   F+Y R E+      +  
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATKGFVYTRSEYPHAIAVMTE 235

Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV     +G+LG S    G+  DI V  GAGAY+CGEETALL SLEGK+G  R KPP PA
Sbjct: 236 AVGIAREAGILGPSVLGSGHTFDIEVRAGAGAYVCGEETALLNSLEGKRGIVRAKPPLPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RGT    I+G+V Y    E +
Sbjct: 296 HKGLFNCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYGGLFETA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             ++  +++++  GG   G   + AV  GG      P   +     DY+        +G 
Sbjct: 356 FGLSLGDIVDRIGGGTVTGRP-VKAVQVGGPLGAYFPR-ALFDTPFDYESFAAKDGLIGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D + D++K       F   ESCG+CTPCR G+   +   +++  GI  ++   L
Sbjct: 414 AGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETADKIAHGIEPEKNRAL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF------RPLIE 413
           L ++   ++  ++CALG    +P+   + +F       PL+E
Sbjct: 474 LADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDFSPAPLVE 515


>gi|116695640|ref|YP_841216.1| tungsten-containing formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
 gi|113530139|emb|CAJ96486.1| Tungsten-containing formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
          Length = 569

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 214/392 (54%), Gaps = 25/392 (6%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           G +L  S++ G  D            ++  ++ SGLRG GGAGF TG KW  +       
Sbjct: 198 GYALLKSLASGDLDPA---------AVLCTMEDSGLRGLGGAGFPTGRKWRIVQN--EPA 246

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P  + +N DE EPGT KDR  +  +PH  +EG +IA+  +     +IY+R E+   RE L
Sbjct: 247 PRLMAINIDEGEPGTFKDRVYLERDPHRFLEGMLIAATVVNVSAIYIYLRDEYAGCRELL 306

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
              +        L  +  +     I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ 
Sbjct: 307 AEELQR------LQQDPPIPGLPTIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYV 360

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT  +N E++  V  I+ +GA W++  GR   +G + FS+SG V  P     
Sbjct: 361 AQVGLFGRPTLEHNFETLYWVRDIIEKGAEWFASQGRNGRKGLRSFSVSGRVKRPGVHLA 420

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              IT  ELI+++CGG+  G       +PGG+S   LPA  M    +D+D L+  G  +G
Sbjct: 421 PAGITVRELIDEYCGGMLDG-HAFYGYLPGGASGGILPA-SMGNIPLDFDTLQPYGCFIG 478

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+++       +A   L  F+KHESCGQCTPCR GT   + ++ +       K ++ 
Sbjct: 479 SAAVVILSDQDSATQAARNLMHFFKHESCGQCTPCRTGTAKTLDLIRQ------PKWDLP 532

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            L ++S  +   +IC LG AA  P+  +IK F
Sbjct: 533 ALDDLSAVMRDASICGLGQAAPNPVDCVIKYF 564


>gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1]
          Length = 632

 Score =  249 bits (635), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 151/395 (38%), Positives = 226/395 (57%), Gaps = 9/395 (2%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + + + R  ++ + K+L E   + +I  +  SGLRGRGG GF TGMKW     +  D   
Sbjct: 157 IDEYIGRHGYEALGKVLTEMTPEDVIQTILDSGLRGRGGGGFPTGMKWKLARNIVPDADQ 216

Query: 79  -YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA   +IYVR E+    E L 
Sbjct: 217 KYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMSIAGYAIGATQGYIYVRAEYPIAVERLN 276

Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            A+ +   +G+LG N   +   +D+D+    GAGA++CGEETAL+ S+EG +G+PR +PP
Sbjct: 277 IAIKQAREAGMLGKNIFGTDFCFDIDL--RLGAGAFVCGEETALMTSIEGNRGEPRPRPP 334

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GL+  PT +NNVE+ A +P I+  GA W++  G E ++GTK+F++ G +     V
Sbjct: 335 FPAEKGLFQKPTILNNVETYANIPQIILNGAEWFASMGTEKSKGTKVFALGGKIKNTGLV 394

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T  E+IE+  GGI  G     A   GG S  C+ A      I DYD L  +GS 
Sbjct: 395 EVPMGTTLREVIEEIGGGIPNG-KKFKAAQTGGPSGGCIDASNFDIPI-DYDNLIGIGSM 452

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  +IVMD    ++        F   ESCG+CTPCR GT  M  +++++ KG     +
Sbjct: 453 MGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTKRMWEILDKITKGKGTLED 512

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +D L E++ +I+  ++C LG  A  P+   ++ FR
Sbjct: 513 LDKLEELAYHIKANSLCGLGQTAPNPVLSTLRCFR 547


>gi|294338444|emb|CAZ86770.1| Tungsten-containing formate dehydrogenase beta subunit [Thiomonas
           sp. 3As]
          Length = 597

 Score =  248 bits (634), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 217/375 (57%), Gaps = 23/375 (6%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  + +I  +  SGLRG GGAGF  G KW  +    +  P  + VN DE EPGT KDR 
Sbjct: 238 QRSAEEVIKALSDSGLRGLGGAGFPAGRKWGIVRNYPA--PRLMAVNIDEGEPGTFKDRT 295

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            +  +PH  +EG +IA+  +G    ++Y+R E+   R  L+  +    A         L 
Sbjct: 296 YLERDPHRFLEGVLIAAQVVGISTCYLYLRDEYHGGRAVLEREIARLQAD----PPCALP 351

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           +   I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A +GL+G PT  +N E++  
Sbjct: 352 H---IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAEIGLFGRPTLEHNFETLYW 408

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V  I+ RGA+W+S FG    +G + FS+SG V  P        IT  EL++ +CGG+  G
Sbjct: 409 VRDIVERGAAWFSSFGLNGRKGLRSFSVSGRVKSPGVKLAPAGITLKELVDTYCGGMLDG 468

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAI 333
              L A +PGG+S   LPA ++    +D+D L+  G  +G+AA+IV+   DR+ D    +
Sbjct: 469 -HTLYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGSAAIIVLSDQDRARDAALNV 526

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            R   F++HESCGQCTPCR GTG   ++M+      A + +   L ++++ +   +IC L
Sbjct: 527 MR---FFEHESCGQCTPCRVGTGKAAQLMQ------APQWDHATLEDLNQVMSDASICGL 577

Query: 394 GDAAAWPIQGLIKNF 408
           G AA  P++ +   F
Sbjct: 578 GQAAPNPVRCVQTYF 592


>gi|307730640|ref|YP_003907864.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1003]
 gi|307585175|gb|ADN58573.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1003]
          Length = 521

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 219/392 (55%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L+   D     +  SGLRGRGGA F  G+KW  + +       
Sbjct: 116 SIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAFPAGIKWRTV-RAAKAPQK 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA   +IYVR E+     +L+A
Sbjct: 175 YVVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATAGYIYVRSEYPHSMATLEA 234

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+ +  A+G LG +S LG  +  ++ V  GAG+Y+CGEETALLESLEGK+G  R KPP P
Sbjct: 235 AIAKARAAGWLG-DSVLGSAHRFELFVAKGAGSYVCGEETALLESLEGKRGIVRAKPPVP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGLYG PT +NNV ++A VP I  RGA++Y  FG   +RGT  F ++G+V     VE 
Sbjct: 294 ALVGLYGQPTVINNVITLATVPIIFARGAAYYKDFGMGRSRGTLPFQLAGNVKQGGLVEL 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+  + GG   G     AV  GG     LP  Q     MDY+    +G+ +G
Sbjct: 354 AFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              ++V D ++++         F   ESCG+CTPCR G+   + V+ R+  G    R++ 
Sbjct: 412 HGGLVVHDDTSNLADLAQYAMHFCALESCGKCTPCRIGSTRGVEVIARIRNGDTSTRQVQ 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 472 LLRDLCDTMVSGSLCAMGGMTPYPVLSALDHF 503


>gi|170693702|ref|ZP_02884860.1| NADH dehydrogenase (quinone) [Burkholderia graminis C4D1M]
 gi|170141484|gb|EDT09654.1| NADH dehydrogenase (quinone) [Burkholderia graminis C4D1M]
          Length = 521

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 150/392 (38%), Positives = 219/392 (55%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S  D ++ G  + +   L+   D     +  SGLRGRGGA F  G+KW  + +       
Sbjct: 116 STDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAFPAGIKWRTV-RAAKAAQK 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA   +IYVR E+     +L+A
Sbjct: 175 YIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATAGYIYVRSEYPHSIATLEA 234

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+ +  A+G LG +S LG  +  ++ V  GAG+Y+CGEETALLESLEGK+G  R KPP P
Sbjct: 235 AIAKARAAGWLG-DSVLGSAHRFELFVAKGAGSYVCGEETALLESLEGKRGIVRAKPPVP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGLYG PT +NNV ++A VP I  RGA++Y  FG   +RGT  F ++G+V     VE 
Sbjct: 294 ALVGLYGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGTLPFQLAGNVKQGGLVEL 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  ELI  + GG   G     AV  GG     LP  Q     MDY+    +G+ +G
Sbjct: 354 AFGVTLRELIYDYGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              ++V D ++++ +       F   ESCG+CTPCR G+   + V+ R+  G    R++ 
Sbjct: 412 HGGLVVHDDTSNLAELAQYAMHFCAIESCGKCTPCRIGSTRGVEVIARIRNGDTSTRQVQ 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 472 LLRDLCDTMVSGSLCAMGGMTPYPVMSALDHF 503


>gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 595

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/367 (40%), Positives = 215/367 (58%), Gaps = 4/367 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+E+K SGLRGRGG GF TG+KW F     +D+  Y+V NADE +PG   DR I+  +P
Sbjct: 154 VIDEMKLSGLRGRGGGGFPTGLKWQFAANNSADQ-KYVVCNADEGDPGAFMDRSILEGDP 212

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H++IE   I  ++ GA    +Y+R E+      L+ A+D+    GLLG N    G+D DI
Sbjct: 213 HSVIEAMAICGYSTGASKGLVYIRAEYPLAINRLKKAMDDAREYGLLGKNILGSGFDFDI 272

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  G +G PT VNNVE+ A +P I+
Sbjct: 273 EIKYGAGAFVCGEETALIHSMEGERGEPTSKPPFPAESGYWGKPTNVNNVETFANIPEII 332

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             G  W+   G E + GTK+F+++G +N    VE  M  T  E+I +  GGI  G     
Sbjct: 333 LNGGEWFKSIGTEKSSGTKVFALAGKINNVGLVEVPMGTTLREVIFEIGGGISNG-KKFK 391

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  CL    +   I D+D L   GS +G+  +IVMD    ++        F  
Sbjct: 392 AVQTGGPSGGCLTERDLDTPI-DFDSLLAKGSMMGSGGMIVMDEDNCMVAVSKFYLEFTV 450

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+CTPCR G   +  +++++ KG     +++LL E+S+ I+  ++C LG  A  PI
Sbjct: 451 EESCGKCTPCRIGNTRLYEILDKITKGNGTLEDLELLKELSETIKDTSLCGLGQTAPNPI 510

Query: 402 QGLIKNF 408
              +  F
Sbjct: 511 LSTLDQF 517


>gi|296134508|ref|YP_003641750.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thiomonas intermedia K12]
 gi|295794630|gb|ADG29420.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thiomonas intermedia K12]
          Length = 626

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/380 (37%), Positives = 218/380 (57%), Gaps = 33/380 (8%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  + +I  +  SGLRG GGAGF  G KW  +    +  P  + VN DE EPGT KDR 
Sbjct: 238 QRSAEEVIKALSDSGLRGLGGAGFPAGRKWGIVRNYPA--PRLMAVNIDEGEPGTFKDRT 295

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            +  +PH  +EG +IA+  +G    ++Y+R E+   R  L+  +            ++L 
Sbjct: 296 YLERDPHRFLEGVLIAAQVVGISTCYLYLRDEYHGGRAVLEREI------------ARLQ 343

Query: 157 YDVDIIVHH-----GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            D    + H     GAGAYICGEE+A++ES+EGK+G+PR++PP+ A +GL+G PT  +N 
Sbjct: 344 ADPPCALPHIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAEIGLFGRPTLEHNF 403

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++  V  I+ RGA+W+S FG    +G + FS+SG V  P        IT  EL++ +CG
Sbjct: 404 ETLYWVRDIVERGAAWFSSFGLNGRKGLRSFSVSGRVKSPGVKLAPAGITLKELVDTYCG 463

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTD 328
           G+  G   L A +PGG+S   LPA ++    +D+D L+  G  +G+AA+IV+   DR+ D
Sbjct: 464 GMLDG-HTLYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGSAAIIVLSDQDRARD 521

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
               + R   F++HESCGQCTPCR GTG   ++M+      A + +   L ++++ +   
Sbjct: 522 AALNVMR---FFEHESCGQCTPCRVGTGKAAQLMQ------APQWDHATLEDLNQVMSDA 572

Query: 389 TICALGDAAAWPIQGLIKNF 408
           +IC LG AA  P++ +   F
Sbjct: 573 SICGLGQAAPNPVRCVQTYF 592


>gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 623

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/351 (38%), Positives = 204/351 (58%), Gaps = 4/351 (1%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           + TG KWS +    SD   Y++ N DE +PG   DR +M  +PH +IEG  IA++  GA 
Sbjct: 198 YPTGKKWSQVLSYASDM-KYVICNGDEGDPGAFMDRSLMEGDPHNIIEGMAIAAYGTGAS 256

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVR E+      L  A+++    GLLG N    G + D+ V+ GAGA++CGE +AL
Sbjct: 257 EGYIYVRAEYPLAVARLNKAIEQAREIGLLGKNILGTGLNFDVHVNQGAGAFVCGEGSAL 316

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG++G PR+K       GL+  PT +NNVE+ A V  I+  GA+WY  +G + + G
Sbjct: 317 IASIEGERGMPRVKAKRTVEEGLWKKPTVLNNVETFANVRHIIMNGAAWYQSYGTKGSAG 376

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK F+++G+VN    +E  M  T  ++I +  GGIRG      AV  GG S  CL    +
Sbjct: 377 TKAFALTGNVNNTGLIEVPMGTTLRKIIFEIGGGIRGN-KKFKAVQIGGPSGGCLTEEHL 435

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A +D+D L + G+ +G+  +++MD  T +++       F ++ESCG+C PCREGT  M
Sbjct: 436 DMA-LDFDSLIDAGAMIGSGGMVIMDEDTCMVEVAKFFMNFTQNESCGKCVPCREGTKIM 494

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++E++V G     +++LL E+S  I    +C LG  AA P+   +K FR
Sbjct: 495 LNILEKIVSGKGSMEDLNLLEELSDTITNTALCGLGKTAANPVVSSLKYFR 545


>gi|189308114|gb|ACD86941.1| mitochondrial NADH dehydrogenase [Caenorhabditis brenneri]
          Length = 190

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 112/177 (63%), Positives = 140/177 (79%)

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG VN PCTVEE MS+   +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P       +MD
Sbjct: 1   SGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDTVLMD 60

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D L    SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG  W+ ++M R
Sbjct: 61  FDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNKMMWR 120

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
            V G A+  EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H+
Sbjct: 121 FVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFHK 177


>gi|192293100|ref|YP_001993705.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1]
 gi|192286849|gb|ACF03230.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1]
          Length = 428

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/356 (41%), Positives = 207/356 (58%), Gaps = 11/356 (3%)

Query: 60  FSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115
           F T  KW FM +  S+R      YL VN DE+EPG+ KDR +M   PH LIEG  IA++A
Sbjct: 60  FPTANKWRFM-RTGSERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYA 118

Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGE 174
           IGA    I VR E+     +L  A+ E  A+GLLG +    G+D+ + VH  AG YI GE
Sbjct: 119 IGATEVIILVRDEYRAAAAALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGE 178

Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234
           ETAL+ ++EG++  PR +PP+PA  GL+G PTTVNNVE+++ VP+I+  GA WY      
Sbjct: 179 ETALIAAIEGERPVPRHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGAEWYRSLSFT 238

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
           +  GTKL+ ISG V  P  +E  +  T  EL+ +  GGIR G   LLA  PGG +     
Sbjct: 239 DEGGTKLYGISGCVERPQLIEAPIGSTARELLHR-AGGIRNG-RGLLAFQPGGGATAFFE 296

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
             ++    +D+   K+ GS LGT A+IV+D     + AI R   FY  ESCG CTPCR+G
Sbjct: 297 KAEL-DVPLDFTSTKKAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDG 355

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYE--VSKNIEGRTICALGDAAAWPIQGLIKNF 408
             W+ ++++ L  G   + +I++L++        GR+ C L   A  P++  ++ F
Sbjct: 356 LPWVSKLLDALEAGKGTQGDIEVLHQHVALSGPSGRSYCDLNTGALTPLRSGLERF 411


>gi|163733313|ref|ZP_02140756.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149]
 gi|161393101|gb|EDQ17427.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149]
          Length = 568

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 223/393 (56%), Gaps = 21/393 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           ++ SD ++ G ++ +  + E G DW  +  +V ASGLRG GGAGF +G KW F+    + 
Sbjct: 191 ETFSDYVAEGGYETLKTLRETG-DWEKVQEDVLASGLRGLGGAGFPSGKKWGFV--RANP 247

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  AFIY+R E+    E 
Sbjct: 248 GPRYLAVNGDEGEPGTFKDRYYLERVPHLFLEGMLIAAWAVEAETAFIYMRDEYPAVLEI 307

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L   +     +G++      GY   I +  GAGAYICGEE+A++ES+EGK+G PR +PPF
Sbjct: 308 LAREIKALEEAGIVTP----GY---IDLRRGAGAYICGEESAMIESIEGKRGMPRHRPPF 360

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A VG++G PT V+NVE++  V  I R G    S   +   +G + +S+SG V  P    
Sbjct: 361 VAQVGVFGQPTLVHNVETLHWVTRICREGPEVLSATEKNGRKGLRSYSVSGRVAQPGVYL 420

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  ++IE   GG+  G     A  PGG S   LPA  +    +D+D L+ +GS +
Sbjct: 421 LPAGSTITDIIEA-AGGMADG-HLFKAYQPGGPSSGILPA-SISDVPLDFDTLQPLGSFI 477

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M+      A + + 
Sbjct: 478 GSAAVVVLSDKDSARAAALNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------ADQWDT 531

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            LL E+S  +   +IC LG AA  PI+ ++K+F
Sbjct: 532 GLLEELSTAMVDASICGLGQAAPNPIRMVMKHF 564


>gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit
           [uncultured archaeon GZfos26D6]
          Length = 654

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 246/417 (58%), Gaps = 6/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +F+    +   +++D ++ G +  + K+L     + ++ EVK++ LRGRGG GF  G KW
Sbjct: 139 VFSGNLWVDPANINDYIALGGYQALAKVLHGMTPEEVLEEVKSANLRGRGGGGFPAGRKW 198

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               +  + +P Y++VN DE +PG   DR IM   PH ++EG +IA++AIG+   F+YVR
Sbjct: 199 EST-RNAAGKPKYVIVNCDEGDPGAYMDRSIMEGNPHRVLEGLIIAAYAIGSQQGFVYVR 257

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    ++L  A+++    G LG +    G++ D+ VH GAGA++ GE +AL+ ++EGK
Sbjct: 258 QEYPLAVKNLAIALEQAKEYGFLGKDILGSGFEFDVKVHRGAGAFVSGESSALMNAIEGK 317

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PR K    ++ G++G P+ +NNVE+ A+VP I+++GA W++  G E ++GTK+FS+ 
Sbjct: 318 VGEPRPKYIHTSDSGVWGKPSNLNNVETYAIVPLIIKKGADWFNSIGTEGSKGTKIFSLV 377

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    VE  M  T  ++I K  GG   G     AV  GG S   +P   +   + D+
Sbjct: 378 GKVNNTGLVEVPMGTTLRDIIYKI-GGGIPGGKRFKAVQTGGPSGGVIPERYLDSPV-DF 435

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L ++GS +G+  +IVMD  T I+        F  +ESCG+C PCREG   M  +++ +
Sbjct: 436 DELTKLGSMMGSGGMIVMDEDTCIVDIARYFVDFLCNESCGKCVPCREGLKRMREILDDI 495

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           V G  ++ +I+LL+E++  ++  ++CALG  AA P+   I+ F    E  I +  RC
Sbjct: 496 VAGKGREGDIELLHEIADVMKSASLCALGTTAANPVLSTIRYFGDEYEAHIKE-RRC 551


>gi|317052150|ref|YP_004113266.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
 gi|316947234|gb|ADU66710.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
          Length = 572

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 206/363 (56%), Gaps = 6/363 (1%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           + TG+KW  + K   +R  ++V N DE +PG   DR +M  +PH L+EG  IA +A GA 
Sbjct: 180 YPTGVKWQLVRKAPGER-KFVVANGDEGDPGAYMDRTLMESDPHRLLEGMAIAGYASGAQ 238

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177
             ++YVRGE+    E L+ A+ +   +G+LG N  LG  +   + V  GAGA++CGEETA
Sbjct: 239 HGYLYVRGEYPVAAERLRKAIKDAQKAGILG-NQVLGSRFSFTLEVRIGAGAFVCGEETA 297

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+ GK+GQP  +PP+PA  GL+GCPT +NNVE+   V  I+R G   ++  G   +R
Sbjct: 298 LMASITGKRGQPVPRPPYPAQRGLWGCPTLINNVETFGSVANIVRDGWEAFAAIGTPKSR 357

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     +E  M I+  E++    GG+ G      A   GG S  C+P  Q
Sbjct: 358 GTKIFALCGEVENTGLIEVPMGISLREVVFDIGGGL-GEGKTFKAAQTGGPSGGCIPI-Q 415

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                MDY+ L+E+GS +G+  +IVM ++T ++        F   ESCG+CTPCR GT  
Sbjct: 416 HLDTPMDYESLQELGSIMGSGGLIVMGQNTCMVDVAKFFMEFSLDESCGKCTPCRAGTAQ 475

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R++  +  G A   ++D L  +   +   ++C LG  A  P+ G ++ FR      I+
Sbjct: 476 LYRLLTNIGNGSATIEDMDHLENLCAMVRDTSLCGLGITAPNPVLGTLQYFRDEYLAHIE 535

Query: 418 QYH 420
           + H
Sbjct: 536 KRH 538


>gi|209519328|ref|ZP_03268127.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160]
 gi|209500212|gb|EEA00269.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160]
          Length = 524

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/409 (35%), Positives = 219/409 (53%), Gaps = 5/409 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L+   D     +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +       Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 158 PAGIKWRTV-RGAKAAQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG S    G   ++ V  GAG+Y+CGEETA+L
Sbjct: 217 GYIYVRSEYPHSIATLEAAIARARKAGWLGDSVLSSGQRFELFVAKGAGSYVCGEETAML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GLYG PT +NN  ++A VP I  RGA++Y  FG   +RGT
Sbjct: 277 ESLEGKRGIVRAKPPVPALAGLYGQPTVINNAITLATVPIIFARGAAFYKDFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  EL++   GG   G     AV  GG     LP  Q  
Sbjct: 337 LPFQLAGNIKRGGLVELAFGVTLRELLDDFGGGTASGRPA-RAVQVGGPLGTYLPESQWD 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+    +G+ +G   ++V D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 -IPMDYEAYAAVGAVIGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V+ R+  G    R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 EVIARIRNGDTSTRQVQLLRDLCDTMVAGSLCAMGGMTPYPVLSALDHF 503


>gi|51894343|ref|YP_077034.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51858032|dbj|BAD42190.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 618

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/387 (40%), Positives = 220/387 (56%), Gaps = 4/387 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           +LE     +I EVK SGLRGRGG GF TG KW     V  D   Y++ NADE +PG   D
Sbjct: 167 LLEMTPAQVIEEVKRSGLRGRGGGGFPTGRKWELAAAVEGDV-KYVLCNADEGDPGAFMD 225

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS- 153
           R I+  +PH ++E   IA +AIGA   +IYVR E+      L+ A+ +    GLLG N  
Sbjct: 226 RSIIEGDPHAILEAMAIAGYAIGAQHGYIYVRAEYPVAVHRLEIAIRQARELGLLGENIL 285

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+  DI +  GAGA++CGEETAL+ S+EG++G PR +PPFPA  GL+G PT  NNVE+
Sbjct: 286 GTGFSFDIDIRLGAGAFVCGEETALIASIEGQRGLPRPRPPFPAQKGLWGKPTLNNNVET 345

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A VP I+  GA  +   G E + GTK+F+++G+V     VE  +  T  E++    GGI
Sbjct: 346 YANVPYIILHGAEAFRSVGTEKSPGTKVFAVAGNVMNTGLVEVPIGTTLREIVYGMAGGI 405

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
             G     A   GG S  C+PA  +    MDY+ L E+GS +G+  +IVMD  + ++   
Sbjct: 406 PKGRP-FKAAQTGGPSGGCIPA-HLLDIPMDYEPLNEVGSMMGSGGLIVMDDQSCMVDVA 463

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                F + ESCG+C PCR GT  M+ +++R+V+G     ++D L  ++  I+   +C L
Sbjct: 464 RFYLQFTQDESCGKCPPCRIGTKRMLEILDRIVEGEGTMEDLDELERLANGIKATALCGL 523

Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQYH 420
           G  A  P+   ++ FR   E  +   H
Sbjct: 524 GQTAPNPVLSTLRYFREEYEAHVRDKH 550


>gi|116749388|ref|YP_846075.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116698452|gb|ABK17640.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 421

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 154/368 (41%), Positives = 216/368 (58%), Gaps = 8/368 (2%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F    KW  +P   +  P YLV N+DE EPGT KDR ++  +PHT+IEG ++A +AIGA 
Sbjct: 59  FPASKKWESVPADGA-YPRYLVANSDEMEPGTFKDRVLIHADPHTIIEGMILAGYAIGAS 117

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177
            AF++VR  +      ++  +     +G LG N  LG  Y +DI+VH   G YICGE +A
Sbjct: 118 KAFLFVRPSYESSAAIMERELRIAREAGYLGRNI-LGTDYSLDIVVHRSGGRYICGEASA 176

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL ++ GK+  P+  PP+P   GL+  PT VNNVE++A VP ILR G  W+ G  R    
Sbjct: 177 LLNAVMGKRPNPQRPPPYPTVKGLWERPTVVNNVETLANVPHILRNGPEWFRGLSRSKTP 236

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISG V+ P  VE  M    +E+IE+H GG+  G     A +PGG+S   L    
Sbjct: 237 GTKLFCISGKVSRPGCVELPMGTRLNEIIEEHAGGMAPG-SEFKACLPGGASTYFLTRDN 295

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A MD+DG+  + + LGT AVIV DR T ++ A   L  F+  ESCG CTPCREG  +
Sbjct: 296 LH-AGMDFDGMAAVKNRLGTGAVIVFDRKTCLVGATLNLMRFFARESCGWCTPCREGLPY 354

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ER+ +G  ++  I +L  +S+ +   + CAL   AA P++ L+ +F   + E I 
Sbjct: 355 MRDLLERIEEGEGREEYIPMLRLMSRQVWN-SYCALAPGAASPVESLLDHFADEVHEHIS 413

Query: 418 QYHRCNFQ 425
           Q  RC F+
Sbjct: 414 Q-KRCPFK 420


>gi|253997399|ref|YP_003049463.1| NADH dehydrogenase (quinone) [Methylotenera mobilis JLW8]
 gi|253984078|gb|ACT48936.1| NADH dehydrogenase (quinone) [Methylotenera mobilis JLW8]
          Length = 517

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 150/409 (36%), Positives = 219/409 (53%), Gaps = 5/409 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +   SL D ++   +  +   L+     I+  V  SGLRGRGGA F
Sbjct: 99  LKKQQRLTFARVGVINPVSLDDYIAHDGYQGLKNALKLSGADIVKAVTDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+ +   C     Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 159 PTGIKWNTVLG-CESEQKYVVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAGVAVGATQ 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+     +L  A++    +G LG N    G    + V   AGAY+CGEET+LL
Sbjct: 218 GYIYLRSEYPHALVTLNQAIEVANKAGYLGDNLLGSGKAFHLEVRRAAGAYVCGEETSLL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+A VP IL +GA +Y+ +G   +RGT
Sbjct: 278 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISLASVPIILDKGAQYYADYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE +   T  EL+    GG   G   + AV  GG     LP  Q  
Sbjct: 338 LPIQLAGNLKHNGLVELAFGATLRELLYDFGGGAASG-KPIRAVQVGGPLGAYLPESQFD 396

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + LG   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 397 -TPLDYEAFAKIWAVLGHGGIVAFDDTVDMSKMARYAFEFCAVESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++++  G    + I L+ ++S  +   ++CALG    +P+   + +F
Sbjct: 456 EVIDKIRSGKDHAKNIQLVRDLSDTMLNGSLCALGGMTPYPVLSALNHF 504


>gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 627

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/369 (39%), Positives = 226/369 (61%), Gaps = 6/369 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +INEV  SGLRGRGG GF TG KWSF       +  Y++ N DE +PG   DR +M   P
Sbjct: 185 VINEVTESGLRGRGGGGFPTGRKWSFAAASPGTK-KYIICNGDEGDPGAFMDRSVMEGNP 243

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H++IEG +IA +AIGA   +IY R E+    + ++ A+ +  A GLLG+N  LG + +  
Sbjct: 244 HSVIEGMMIAGYAIGADEGYIYARAEYPLAIQRMRKAITDAEAIGLLGNNI-LGSNFNFK 302

Query: 163 VH--HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           +H   GAGA++CGEETAL+ S+EG++G PR +PPFPA  GL+GCPT +NNVE++A +  I
Sbjct: 303 IHIKEGAGAFVCGEETALIASIEGQRGMPRPRPPFPAVKGLWGCPTVINNVETLANLRYI 362

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           +  GA+ +  +G  ++ GTK F+++G +     VE  M IT  E++    GG+R G    
Sbjct: 363 INNGAALFKSYGTNHSAGTKTFALAGQIQNTGLVEVPMGITLREIVFDIGGGLREG-KKY 421

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AV  GG S  CL   ++    +DYD L + G+ +G+  ++VM   T +++       F 
Sbjct: 422 KAVQIGGPSGGCLTEEKLD-LPLDYDELIKAGAMIGSGGLVVMGDDTCMVETAKFFMSFV 480

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           ++ESCG+C PCREGT  M+ ++ ++ +G   + ++ +L E++ +++  ++C LG  A  P
Sbjct: 481 QNESCGKCVPCREGTKQMLALLTKITEGKGTEEDLVVLEELAHSVKDGSLCGLGKTAPNP 540

Query: 401 IQGLIKNFR 409
           +   ++ FR
Sbjct: 541 VLTTLRYFR 549


>gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 630

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 145/379 (38%), Positives = 220/379 (58%), Gaps = 8/379 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I E+  SGLRGRGG GF TG KWS + K   D   Y++ NADE +PG   DR I+  +P
Sbjct: 189 VIKEITDSGLRGRGGGGFPTGKKWS-LAKDSKDDIKYIICNADEGDPGAFMDRAILEGDP 247

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDV 159
           +++IE   IA +AIGA    IY+R E+    + L  A+++    G++G     S   +DV
Sbjct: 248 NSIIEAMAIAGYAIGASKGLIYIRAEYPLAVQRLMIAIEQAKEIGVIGEGILGSSFNFDV 307

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I   +GAGA++CGEETAL+ S+EG +G+P  KPPFPA  GL+  PT+VNNVE+ A +  
Sbjct: 308 EI--KYGAGAFVCGEETALVHSIEGCRGEPTTKPPFPAEKGLFNKPTSVNNVETFANITA 365

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+  G+ W+S  G   ++GTK+F+++G +     VE  M I  +E+I +  GGI+   + 
Sbjct: 366 IINNGSQWFSSIGTNTSKGTKVFALAGKIKNVGLVEVPMGIKLEEIIYEIGGGIKDNKE- 424

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S  C+P+  +   I DY+ L  +GS +G+  +IVMD    ++        F
Sbjct: 425 FKAVQTGGPSGGCIPSMLLDLPI-DYESLNAVGSMMGSGGMIVMDEDDCMVDIAKFYLEF 483

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR G   ++ ++ ++V+G   + +I  L ++SK I+   +C LG  A  
Sbjct: 484 IVDESCGKCTPCRVGNKRLLEILNKIVEGKGTEDDIKKLKDLSKVIKDTALCGLGQTAPN 543

Query: 400 PIQGLIKNFRPLIEERIDQ 418
           PI   +  F       +D+
Sbjct: 544 PILSTMTYFMDEYNAHVDE 562


>gi|308271653|emb|CBX28261.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
           Desulfobacterium sp.]
          Length = 633

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/398 (37%), Positives = 225/398 (56%), Gaps = 6/398 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           RG++  V+ +       II  VK SGLRGRGG GF TG+KW    K   +R  +++ NAD
Sbjct: 175 RGYYAFVNALTNTKPSDIIKTVKESGLRGRGGGGFPTGIKWETCAKHHGNR--HIICNAD 232

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR I+  +PH+++EG +IA+ AIG+   F YVR E+      L  A+ +  A
Sbjct: 233 EGDPGAYMDRSILEGDPHSVLEGMLIAALAIGSSSGFFYVRNEYPLAVSRLITAIKQAEA 292

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
            GLLG N +  G+  ++ +  GAGA++CGE TAL+ SLEG  G+PR K       G    
Sbjct: 293 YGLLGGNIAGTGFSFNVKISRGAGAFVCGESTALMSSLEGLVGRPRAKYVHTVEKGFRDS 352

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           P+ +NNVE+ A +P I+ +GA W+SG G E+++GTK+FS+ G +     VE  M I   +
Sbjct: 353 PSNLNNVETYANIPPIVLKGAPWFSGMGTEHSKGTKVFSLVGKIKNTGLVEVPMGINLKD 412

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++    GG+        AV  GG S  C+P   +   + DY  L E+GS +G+  +IVMD
Sbjct: 413 IVFSIGGGVP-KKKKFKAVQTGGPSGGCIPENLIDLPV-DYQKLAEVGSIMGSGGMIVMD 470

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
           + T ++        F K ESCGQC PCREG   M+ ++  + +G  +  +I+LL E+   
Sbjct: 471 QDTCMVDVARYFLDFLKEESCGQCNPCREGIKQMLDILTDICQGNGKDGDIELLEELGSM 530

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           I+  ++C LG +A  P+   I  FR   E  I ++ +C
Sbjct: 531 IQKFSLCGLGTSAPNPVLTTILYFRDEYEAHI-KHKKC 567


>gi|113866668|ref|YP_725157.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
 gi|113525444|emb|CAJ91789.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
          Length = 520

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/410 (37%), Positives = 223/410 (54%), Gaps = 5/410 (1%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q+R+     G+    SL D  +   +  +++ L      I+ EV  SGLRGRGGA 
Sbjct: 100 FLKQQERLTFARVGITDPLSLDDYRAHEGFAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    S    Y+V NADE + GT  DR +M  +P  LIEG  IA+ A+GA 
Sbjct: 160 FPTGIKWKTVLGAQSAV-KYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAALAVGAE 218

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      L++A+    A+G LG + +  G    + V  GAGAY+CGEETAL
Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG++G  R KPP PA  GL+G PT +NNV S+A VP IL RGA +Y  +G   +RG
Sbjct: 279 LESLEGRRGVVRAKPPLPALQGLFGKPTVINNVISLATVPVILARGAQYYRDYGMGRSRG 338

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE++  +T  EL+  + GG R G   + AV  GG     LP  + 
Sbjct: 339 TLPFQLAGNIKQGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESRF 397

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+     G  +G   ++V D + D+ K       F   ESCG+CTPCR G+   
Sbjct: 398 D-VPLDYEAYAAFGGVVGHGGIVVFDETVDMAKQARYAMEFCAIESCGKCTPCRIGSTRG 456

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + VM+R++ G    + + L+ ++   +   ++CA+G    +P+   +  F
Sbjct: 457 VEVMDRIIAGEQPVKHVALVRDLCDTMLNGSLCAMGGMTPYPVLSALNEF 506


>gi|295112908|emb|CBL31545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Enterococcus sp. 7L76]
          Length = 363

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/331 (40%), Positives = 195/331 (58%), Gaps = 6/331 (1%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  A+VGLY  PT
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPT 209

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E ++    +E+I
Sbjct: 210 LVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEVNLGTPLEEII 269

Query: 267 --EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
             E++ GG   G  +L  +  GG S P      +R  +  Y+ L      +G+ A++VMD
Sbjct: 270 YGEQYGGGSATG-RSLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMD 328

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
            S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 329 DSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359


>gi|292492466|ref|YP_003527905.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nitrosococcus halophilus Nc4]
 gi|291581061|gb|ADE15518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nitrosococcus halophilus Nc4]
          Length = 564

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/369 (39%), Positives = 215/369 (58%), Gaps = 23/369 (6%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+ ++ SGLRG GGAGF  G KW  + +     P  + VN DE EPGT KDR  +  +P
Sbjct: 211 IISMLEESGLRGLGGAGFPAGRKWRIVRQ--QPAPRLMAVNIDEGEPGTFKDRYYLERDP 268

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H  +EG +IA++A+G    F+Y+R E+   R+ L+  +       LL ++        + 
Sbjct: 269 HRFLEGTLIAAWAVGIDEIFLYLRDEYAGCRQLLEREL------ALLHADPPCQLP-QLH 321

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +  GAGAYICGEE+A++ESLEGK+G PRL+PP+ A VGL+G PT  +N+E++  V  I+ 
Sbjct: 322 LRRGAGAYICGEESAMIESLEGKRGMPRLRPPYVAQVGLFGRPTLEHNLETLYWVREIVE 381

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
           +G  W+S  GR   +G + FS+SG V  P        IT  ELIE++CGG+  G + L  
Sbjct: 382 KGPDWFSSQGRHGRQGLRSFSVSGRVKKPGVHLAPAGITLKELIEEYCGGMLEGHE-LYG 440

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAIWRLSVF 339
             PGG+S   LPA  M    +D+D L+  G  +G+AA+IV    DR+ ++     R   F
Sbjct: 441 YFPGGASGGILPA-SMGDIPLDFDTLQPYGCFIGSAAIIVFSQHDRAREVALNAMR---F 496

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           ++ ESCGQCTPCR GT    ++ME          +  LL E+++ +   +IC LG AA  
Sbjct: 497 FEDESCGQCTPCRVGTAKASKLME------VSTWDQPLLEELAQAMADASICGLGQAAPN 550

Query: 400 PIQGLIKNF 408
           P++ ++K F
Sbjct: 551 PLRCVMKYF 559


>gi|226227790|ref|YP_002761896.1| formate dehydrogenase beta subunit [Gemmatimonas aurantiaca T-27]
 gi|226090981|dbj|BAH39426.1| formate dehydrogenase beta subunit [Gemmatimonas aurantiaca T-27]
          Length = 520

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/409 (36%), Positives = 224/409 (54%), Gaps = 5/409 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q R+ F  +  +   SL D  + G    +++ +      I+ E+ ASGLRGRGGA F
Sbjct: 96  LAEQVRLTFARIGRIDPLSLDDYRTAGGLLGLERAIGMDSAGIVREITASGLRGRGGAAF 155

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    + +  Y+V NADE + GT  DR +M  +P  LIEG  IA+ A+GA  
Sbjct: 156 PAGIKWETVRNARAPQ-KYVVCNADEGDSGTFADRLLMEADPFQLIEGMTIAALAVGATQ 214

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+    +    A+    ++G+LG++     +  DI +  G GAYICGEETALL
Sbjct: 215 GYVYLRSEYPYAAQIFGEALARARSAGMLGASVCGSSHAFDITLRIGGGAYICGEETALL 274

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV + A    +L RGA  Y+  G + + GT
Sbjct: 275 ESLEGKRGVVRAKPPLPALQGLFGQPTVINNVLTFAAATDVLARGAQHYASHGLDRSTGT 334

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F + G++     VE    IT  +L+E+  GG   G   L A+  GG     LPA Q  
Sbjct: 335 MPFQLGGNIQRGGLVELPFGITLRDLVERFGGGSYSG-RALRAIQVGGPLGAYLPASQWD 393

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              + Y+    +G+ LG   ++  D + D+         F  HESCG+CTPCR G+   +
Sbjct: 394 -TPLTYEHFAAIGAMLGHGGIVAFDDTVDMAAQAEFAMAFCAHESCGKCTPCRIGSTRGV 452

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++RL +    + + +LL E+ + +E  ++CALG     P++ ++K+F
Sbjct: 453 EVIQRLRRREQVRDQWNLLEELCETMELGSLCALGGLTPMPVRSVMKHF 501


>gi|225405663|ref|ZP_03760852.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme
           DSM 15981]
 gi|225042808|gb|EEG53054.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme
           DSM 15981]
          Length = 1048

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 239/411 (58%), Gaps = 9/411 (2%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKV 72
           ++  SL   ++R  +  + K L    ++ ++  VK +GLRGRGGAGF TG+KW   +  V
Sbjct: 162 MEFSSLEAYVARDGYAALAKALHGMTQEDVVTVVKDAGLRGRGGAGFPTGVKWEAGLKAV 221

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
             D   ++V NADE +PG   DR ++  +PH++IEG ++  +AIGA   ++YVR E+   
Sbjct: 222 SGDGRKFMVCNADEGDPGAFMDRSLLEGDPHSIIEGMMLGGYAIGASKGYVYVRAEYPIA 281

Query: 133 RESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
            E L  A+D+  A+G+LG +   S   +D++I +  GAGA++CGEET+LL S+EGK+G+P
Sbjct: 282 VERLGNAIDQARAAGILGEHILGSNFSFDLEIRI--GAGAFVCGEETSLLASIEGKRGEP 339

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R KPPFP   GL+  PT +NNVE++A V  I+  G+ WY  FG E + GTK+F+++G + 
Sbjct: 340 RQKPPFPFEKGLFESPTIINNVETLANVAPIVLNGSQWYRQFGTEKSAGTKVFALAGDIV 399

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
               +E  M     ++I K  GG   G     A+  GG S  CL    +   + DY+ L 
Sbjct: 400 NAGIIEVPMGTILGDIIYKI-GGGIIGGKKFKAIQSGGPSGGCLTKEHLNTPV-DYESLA 457

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
           ++G+ +G+  +IVM+  T ++        F   ESCG+C PCR GT  M+ ++ER+ +G 
Sbjct: 458 KLGAIMGSGGLIVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTRRMLEILERITEGK 517

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +  ++DLL E++  I+   +C LG  A  P+   +K FR   E  I   H
Sbjct: 518 GEPGDLDLLEELAGTIQQTAMCGLGQTAPNPVLSTLKYFRDEYEAHIYDKH 568


>gi|239904886|ref|YP_002951624.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
 gi|239794749|dbj|BAH73738.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
          Length = 490

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 232/416 (55%), Gaps = 5/416 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q RI T   G +  +SL D ++   ++ + K L      ++  +K +GLRGRGG GF TG
Sbjct: 9   QLRIATRNCGFIDPESLDDYIAVRGYEALAKALTMTPAEVVEIIKVAGLRGRGGGGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW       +D+  Y+V NADE +PG   DR ++  +PH+++E   I  +AIGA    +
Sbjct: 69  VKWGIALSNAADQ-KYIVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATLGAV 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    + L+ A+D+  A GLLG N    G+D DI + +GAGA++CGEETAL++S+
Sbjct: 128 YIRAEYPLAIKRLRKAIDDARAMGLLGKNIFGSGFDFDIEIKYGAGAFVCGEETALIKSM 187

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG +G+P  KPPFPA  G +  PT VNNVE+ A VP I+ +GA W++G G   ++GTK+F
Sbjct: 188 EGHRGEPVSKPPFPAQSGYWAKPTIVNNVETFANVPAIIIKGADWFAGIGTATSKGTKVF 247

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G +     +E  M  T  E+I    GG   G +   AV  GG S   L    +  AI
Sbjct: 248 ALAGKIVNVGLIEVPMGTTLREVIFDIGGGCPDGKE-FKAVQTGGPSGGALANKDLDVAI 306

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            DY+ L    S +G+  ++VMD    ++        F   E+CG+CTPCR G+  +  ++
Sbjct: 307 -DYESLIARKSMMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYEIL 365

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +++ KG   K ++  L  +S NI+   +C LG     PI   +  F    E  + Q
Sbjct: 366 DKITKGHGTKADLARLKSLSDNIKDTALCGLGQTMPNPILSTMDTFGHEYEAHVTQ 421


>gi|260466532|ref|ZP_05812721.1| NADH dehydrogenase (quinone) [Mesorhizobium opportunistum WSM2075]
 gi|259029681|gb|EEW30968.1| NADH dehydrogenase (quinone) [Mesorhizobium opportunistum WSM2075]
          Length = 518

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/369 (38%), Positives = 208/369 (56%), Gaps = 8/369 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ +V  SGLRGRGGAGF TG+KW  +     DR  Y+V NADE +  T  DR IM  +P
Sbjct: 141 IVKQVTESGLRGRGGAGFPTGIKWKTVLDTTGDR-KYIVCNADEGDSATFADRMIMEGDP 199

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDV 159
             LIEG  IA  A GA   F+Y+R E+      +  AV+    +G+LG+N   S   +D+
Sbjct: 200 FVLIEGMAIAGIATGATKGFVYIRSEYPHAVAVMNKAVEVARKAGVLGTNVLGSPNAFDM 259

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I V  GAGAY+CGEET+LL SLEGK+G  R KPP PA  GL+G PT +NNV S+A VP 
Sbjct: 260 EIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLPAIQGLFGKPTVINNVISLASVPV 317

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           ++ +GA++Y  FG   +RGT    I+G+V +    E +  +T  E+++   GG   G   
Sbjct: 318 VMDKGAAFYKDFGMGRSRGTIPIQIAGNVKHGGLFETAFGLTLGEIVDDIGGGTATGRP- 376

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           + AV  GG      P   +     DY+   +    +G A + V D + D++K       F
Sbjct: 377 VKAVQVGGPLGAYFPR-ALFDTPFDYEEFAKRDGLIGHAGITVFDDTADMLKQARFAMEF 435

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CTPCR G+   +  ++RL  GI  ++ + L+ ++   ++  ++CALG    +
Sbjct: 436 CAIESCGKCTPCRIGSTRGVETIDRLAAGIEPEKNLALVTDLCNTMKFGSLCALGGFTPY 495

Query: 400 PIQGLIKNF 408
           P+   I +F
Sbjct: 496 PVMSSITHF 504


>gi|220931145|ref|YP_002508053.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
 gi|219992455|gb|ACL69058.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
          Length = 408

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/381 (36%), Positives = 216/381 (56%), Gaps = 8/381 (2%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + + L+  +  II E+K SGLRGRGGAGF TG+KW    K  +    Y++ N DE EPGT
Sbjct: 23  LKRALDMDKKDIIEELKKSGLRGRGGAGFPTGLKWELALKEKAGE-KYIICNGDEGEPGT 81

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR ++ + P  ++EG +I ++ IGAH  +IY+RGE+       +  + E    G+LG 
Sbjct: 82  FKDRYLLENSPLKVLEGILIGAYTIGAHQGYIYIRGEYALPINIFRQVIKEAKKRGILG- 140

Query: 152 NSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
           N  +G  Y  D+ +  GAGAY+CG+ET+L+ S+EGK+G  R+KPP+P   GL+  PT VN
Sbjct: 141 NRVMGSDYSFDLKLIKGAGAYVCGDETSLINSIEGKRGTSRIKPPYPTRQGLFNKPTVVN 200

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMSITFDELIEK 268
           NVE++A    I+ +GA  Y   G E +RGTKL  +SG +  P   E E  ++T  ELI+ 
Sbjct: 201 NVETLAAAAEIILQGADKYGSMGTEQSRGTKLVCLSGDICNPGVYEVEFGTMTIKELIDT 260

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             GG++     L  VIPGG S   L   ++      Y+ +++ GS LG+ AV+V+     
Sbjct: 261 FGGGVKCS-SGLKFVIPGGISTSVLKDDEL-DIPYTYEDIEKKGSSLGSGAVVVVSEDHY 318

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME-RLVKGIAQKREIDLLYEVSKNIEG 387
           +   +  +S F+  E+CG C PCREG   +  +++ ++  G   + E  L+ ++ + I  
Sbjct: 319 LPDLMLNVSRFFMDETCGTCFPCREGNRRVHLLLKNKISDGRFDRDEKKLISDIGRAIHL 378

Query: 388 RTICALGDAAAWPIQGLIKNF 408
              C LG  +   +  ++  F
Sbjct: 379 AARCGLGQTSLNFVTSVLNKF 399


>gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
 gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
          Length = 641

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/408 (37%), Positives = 229/408 (56%), Gaps = 5/408 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ D + RG +  + K L     + +++EV  + LRGRGG GF  G KW    +  
Sbjct: 147 INPQNIEDYIQRGGYAALVKTLFHMTPESVLDEVDKANLRGRGGGGFPAGKKWR-TTRDA 205

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +D   Y++VN DE +PG   DR IM   PH ++EG  I +FAIGA   +IYVR E+    
Sbjct: 206 ADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAV 265

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E+L AA+ +    GLLG N    G+D  + VH GAGA++ GE +AL+ ++EG+ G+PR K
Sbjct: 266 ENLYAAIRQAEEYGLLGKNILGSGFDFIVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 325

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
               A  GL+  P+ +NNVE+ A VP I+ +GA W+   G E ++GTK+F++ G VN   
Sbjct: 326 YIRTAIKGLWDKPSNLNNVETWANVPHIINKGAEWFRSIGTEGSKGTKIFALVGKVNNTG 385

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            VE  M  T  ++I K  GG+R G   + AV  GG S  C+P   +   + DYD L ++G
Sbjct: 386 LVEVPMGTTLRDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDALSKLG 443

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S +G+  +I+MD  T ++        F   ESCG+C PCREG   ++ ++ R+ +G    
Sbjct: 444 SMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVDILTRITEGKGTM 503

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            ++D L ++S  +    +CALG  A  P+   +K FR    + I   H
Sbjct: 504 ADMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKH 551


>gi|307544488|ref|YP_003896967.1| NADH dehydrogenase (quinone) [Halomonas elongata DSM 2581]
 gi|307216512|emb|CBV41782.1| NADH dehydrogenase (quinone) [Halomonas elongata DSM 2581]
          Length = 510

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 157/409 (38%), Positives = 229/409 (55%), Gaps = 5/409 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F+ +      S++D ++   +  ++  L      I++EVK SGLRGRGGA F
Sbjct: 99  LARQQRLTFSRIGVTDPLSIADYLALDGFRGLETALTLEPQAIVDEVKTSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    SD+  Y+V NADE + GT  DR  M  +P+ LIEG  IA  A+GA  
Sbjct: 159 PTGIKWQTVHDAPSDQ-KYIVCNADEGDSGTFADRLAMECDPYMLIEGMAIAGLAVGATQ 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+      L  A+     +G LG++ +  G   D+ V  GAGAYICGEET+LL
Sbjct: 218 GYIYLRSEYPLAHRILDEAIARAEQAGYLGADIRGSGRRFDLEVRLGAGAYICGEETSLL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+A VP IL RG   Y+ +G   +RGT
Sbjct: 278 ESLEGKRGMVRYKPPLPAIEGLFGRPTVVNNVLSLAAVPYILDRGGEAYANYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V     VE +   T  EL+E   GG       L AV  GG     LP  Q  
Sbjct: 338 LALQLAGNVKRGGLVELAFGTTLRELMEDFGGGTF-TERPLRAVQVGGPLCAYLPESQW- 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+G+G   V++ D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DLPLDYETFASVGAGVGHGGVVMFDDSVDMAEQARFSMEFCAVESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++R++    +   ++LL E+ + +E  ++CA+G    +P++ ++ +F
Sbjct: 456 EVIDRILANQDRDANLELLDELCETMEDGSLCAMGGMTPFPVKSVMTHF 504


>gi|169351250|ref|ZP_02868188.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
 gi|169292312|gb|EDS74445.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
          Length = 599

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 153/411 (37%), Positives = 233/411 (56%), Gaps = 12/411 (2%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  +++++ + +  +  + K+L E     +++ +K SGLRGRGG GF T
Sbjct: 116 QKRIALHNCGVIDPENINEYIGKDGYFALAKVLQEMTSQEVVDVIKESGLRGRGGGGFPT 175

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW F      D   Y++ NADE +PG   DR I+   PH++IE   IA +AIGA+  +
Sbjct: 176 GVKWQFALDEPGDE-KYVICNADEGDPGAFMDRSILEGNPHSVIEAMAIAGYAIGANHGY 234

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+R E+    E L +A+ +    GLLG N    G+D D+ +  GAGA++CGEETAL++S
Sbjct: 235 IYIRAEYPIAVERLTSAIKQARELGLLGKNIFDSGFDFDLEIRLGAGAFVCGEETALIKS 294

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++G P  KPPFPA+ G++G PT +NNVE+ A +  I++ GA W+   G E + GTK+
Sbjct: 295 IEGERGMPNPKPPFPAHKGVWGKPTIINNVETYANIAQIIQHGAKWFRSIGTETSPGTKV 354

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN---LLAVIPGGSSVPCLPAGQM 298
           F++ G +     +E  M  T  E+I +    I GG  N     AV  GG S  CL   Q+
Sbjct: 355 FALGGKIVNTGLIEVPMGTTLREVIYE----IGGGCPNHKRFKAVQTGGPSGGCLTEEQL 410

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              I  +D L ++GS +G+  +IV+D    ++        F   ESCG+CTPCR GT  M
Sbjct: 411 DTPI-GFDELVKLGSMMGSGGMIVLDEDNCMVDVARFYMDFIVDESCGKCTPCRVGTKRM 469

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++E++ +G      +D L  ++  I+   +C LG  A  P+   I  FR
Sbjct: 470 LELLEQICEGKGTMATLDELEMLASTIQDTALCGLGQTAPNPVLSTIHQFR 520


>gi|170740591|ref|YP_001769246.1| NADH dehydrogenase (quinone) [Methylobacterium sp. 4-46]
 gi|168194865|gb|ACA16812.1| NADH dehydrogenase (quinone) [Methylobacterium sp. 4-46]
          Length = 519

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 155/391 (39%), Positives = 216/391 (55%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S++D  +   +  + + LE G    ++ V  SGLRGRGGAGF TG+KW+ + +  +DR  
Sbjct: 117 SVADYRAHRGYRGLARALEIGAPATVDAVTLSGLRGRGGAGFPTGIKWNTVMRAEADR-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P TLIEG  IA  A+GA   +IY+R E+    E+L+A
Sbjct: 176 YVVCNADEGDSGTFADRMLMEGDPFTLIEGMTIAGVAVGAARGYIYLRSEYPNACETLRA 235

Query: 139 AVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G+LG N    G D  + V  GAGAYICGEET+LLESLEG++G  R KPP PA
Sbjct: 236 AIAAGERAGVLGRNVMGSGRDFHLEVRLGAGAYICGEETSLLESLEGRRGIVRAKPPIPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNV S A VP IL  G   Y+ +G   +RGT    ++G+V     +E +
Sbjct: 296 LKGLFGRPTLVNNVLSFAAVPWILDHGGEAYAAYGMGRSRGTLPIQLAGNVRQGGLIETA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  E+IE   GG R G     A + GG      P G +    MDY+        +G 
Sbjct: 356 FGITLREVIEDFGGGTRSGRPVRAAQV-GGPLGAYFPEG-LFDTPMDYEAFAARKGLVGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             V+V D S D+ +       F   ESCG+CTPCR G       M+RL+ G A    + L
Sbjct: 414 GGVVVFDDSVDMARQARFAFEFCAVESCGKCTPCRIGAVRGRETMDRLLAGEAPAEPLRL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++ + +   ++CA+G     P+   I +F
Sbjct: 474 IEDLCEVMTDGSLCAMGGLTPVPVMSAITHF 504


>gi|116254125|ref|YP_769963.1| NAD-dependent formate dehydrogenase beta subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258773|emb|CAK09879.1| putative NAD-dependent formate dehydrogenase beta subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 518

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/402 (36%), Positives = 215/402 (53%), Gaps = 10/402 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G    + + +      I+ E+  SGLRGRGGAGF TG+KW  +     +R  
Sbjct: 117 SLGDYEAHGGLAGLRRAVSMTPVDIVKEITDSGLRGRGGAGFPTGIKWKTVLDAAGER-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA   F+Y R E+      +  
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATKGFVYTRSEYPHAIAVMTE 235

Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV     +G+LG S    G   DI V  GAGAY+CGEETALL SLEGK+G  R KPP PA
Sbjct: 236 AVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETALLNSLEGKRGIVRAKPPLPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RGT    I+G+V Y    E +
Sbjct: 296 HKGLFNCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYGGLFETA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             ++  +++++  GG   G   + AV  GG      P   +     DY+        +G 
Sbjct: 356 FGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFPR-ALFDTPFDYESFAAKDGLIGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D + D++K       F   ESCG+CTPCR G+   +   +++  GI  ++   L
Sbjct: 414 AGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETADKIAHGIEPEKNRAL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF------RPLIE 413
           L ++   ++  ++CALG    +P+   + +F       PL+E
Sbjct: 474 LADLCNTMKFGSLCALGGFTPYPVMSAMNHFPEDFSPAPLVE 515


>gi|170720892|ref|YP_001748580.1| NADH dehydrogenase [Pseudomonas putida W619]
 gi|169758895|gb|ACA72211.1| NADH dehydrogenase (quinone) [Pseudomonas putida W619]
          Length = 519

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 153/410 (37%), Positives = 221/410 (53%), Gaps = 7/410 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           T Q  +F      +  SL D  + G +  +++ +  G   ++  V  SGLRGRGGA F  
Sbjct: 100 TQQRLLFARAGITRPLSLDDYRAHGGFAGLEQAVALGGAEVVAAVLDSGLRGRGGAAFPA 159

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW  +    + +  Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA   +
Sbjct: 160 GIKWRTVRDAGAGQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADKGY 218

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+      L  A      +G LG + +  G   D+ V  GAGAYICGEETALLES
Sbjct: 219 IYVRSEYPDAIRVLNEAFVIARDAGYLGFDVAGSGQAFDLEVRVGAGAYICGEETALLES 278

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G  R KPP PA  GL+G PT V+NV ++A VPTIL +GA++Y  FG   + GT  
Sbjct: 279 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPTILAKGAAFYRDFGMGRSLGTMP 338

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ++G++ +   VE +  +T  EL+E + GG   G   L A   GG     +P       
Sbjct: 339 FQLAGNIRHGGLVERAFGLTLRELVEGYGGGTASG-RPLKAAQVGGPLGAWVPPSHFD-T 396

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+    MG+ LG   V+V D + ++         F   ESCG+CTPCR G+   M V
Sbjct: 397 PLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSIRGMEV 456

Query: 362 MERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++RL+         D   LL ++   ++  ++CA+G   A+P+   +K F
Sbjct: 457 VDRLIASSDLTERHDQALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYF 506


>gi|121603736|ref|YP_981065.1| NADH dehydrogenase (quinone) [Polaromonas naphthalenivorans CJ2]
 gi|120592705|gb|ABM36144.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Polaromonas naphthalenivorans CJ2]
          Length = 600

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 143/377 (37%), Positives = 211/377 (55%), Gaps = 27/377 (7%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E+  + ++  ++ SGLRG GGAGF  G KW  +       P  + VN DE EPGT KDR 
Sbjct: 241 EEDAERVLAAMENSGLRGLGGAGFPAGRKWRIVRG--QPAPRLMAVNIDEGEPGTFKDRV 298

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            +  +PH  +EG ++A+  +G    +IY+R E+   R  LQA +            +KL 
Sbjct: 299 YLERDPHRFLEGVLVAAQVVGIEACYIYLRDEYHDCRALLQAEI------------AKLQ 346

Query: 157 YDVD-----IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            D       I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT  +N 
Sbjct: 347 ADPPCPLPLIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAEVGLFGRPTLEHNF 406

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++  V  I+++G  W+S FGR   +G + FS+SG V  P        IT  ELI+++CG
Sbjct: 407 ETLYWVRDIVQKGPQWFSSFGRNGRKGLRSFSVSGRVKLPGVKLAPAGITLLELIDEYCG 466

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+  G   L A +PGG+S    PA       +D+D L+  G  +G+AAVIV+ +      
Sbjct: 467 GMADG-HTLYAYLPGGASGGIFPASHA-NVPLDFDTLQPHGGFIGSAAVIVLGQHDKARD 524

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           A   +  F+  ESCGQCTPCR GT    R+M+      A + +   L +++  +   +IC
Sbjct: 525 AALNMMRFFASESCGQCTPCRVGTAKAARLMQ------APRWDNATLEDLNIVMTDASIC 578

Query: 392 ALGDAAAWPIQGLIKNF 408
            LG AA  P++ + K F
Sbjct: 579 GLGQAAPNPVRCVQKYF 595


>gi|134301120|ref|YP_001114616.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134053820|gb|ABO51791.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 575

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 225/393 (57%), Gaps = 5/393 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + + ++ G ++ + K L +  R  +I  VK SGLRGRGG GF TG+KW    K   D 
Sbjct: 156 EDIYEYIAVGGYEALGKALTQMSRAEVIEIVKKSGLRGRGGGGFPTGLKWEITSKQ-EDE 214

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             +++ NADE +PG   DR I+  +PH++IE   I ++AIGA    +Y+R E+      L
Sbjct: 215 EKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGADKGIVYIRAEYPLAISRL 274

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             A+ +    G+LG       ++ D+ + +GAGA++CGEETAL+ S EGK+G+P  KPP+
Sbjct: 275 TTALRQARELGVLGKGIFGTSFNFDVRLKYGAGAFVCGEETALINSCEGKRGEPNYKPPY 334

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G +G PT VNNVE+ A +P I+ RGA W++  G E ++GTK+F+++G +N    VE
Sbjct: 335 PAEEGYWGHPTCVNNVETFANIPVIMTRGAEWFASIGTEKSKGTKVFALAGKINNVGLVE 394

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M ITF E+I    GGI  G     AV  GG S   +    +   I DYD L E+GS +
Sbjct: 395 VPMGITFREIIFDIGGGIPHG-KKFKAVQTGGPSGGVITEKGLDTPI-DYDSLLEIGSMM 452

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD   +++        F   E+CG+C P R GT  +  ++ ++  G A   +I
Sbjct: 453 GSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCVPGRIGTKRLFEMLHKITSGKATMADI 512

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           D L +++  ++  ++C L   A  P+   +K+F
Sbjct: 513 DALKQLAYMVKDSSLCGLCQTAPNPVISTMKHF 545


>gi|332715498|ref|YP_004442964.1| NAD-dependent formate dehydrogenase subunit beta [Agrobacterium sp.
           H13-3]
 gi|325062183|gb|ADY65873.1| NAD-dependent formate dehydrogenase beta subunit [Agrobacterium sp.
           H13-3]
          Length = 518

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 139/391 (35%), Positives = 217/391 (55%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  +      +++ +      I+ +V  SGLRGRGGAGF TG+KW  +    +D+  
Sbjct: 117 SLEDYRANKGMKGLERAVALTPAEIVKQVTDSGLRGRGGAGFPTGIKWKTVADATADQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA   +IY R E+     +++ 
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLAVGATKGYIYTRSEYPHAVRTMEK 235

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+D     G++G++    G   D+ V  GAGAY+CGEET+LL SLEGK+G  R KPP PA
Sbjct: 236 AIDIALREGVIGASVLGSGRAFDLEVRMGAGAYVCGEETSLLNSLEGKRGTVRAKPPLPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNV S++ +P I+ RGA++Y  FG   + GT    ++G++ +    E +
Sbjct: 296 LQGLFGKPTVVNNVISLSSIPVIMDRGAAFYRDFGIGRSHGTIPIQLAGNIRHGGLYETA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +   +L+ +  GG   G   + AV  GG      P   +   + DY+     G  +G 
Sbjct: 356 FGLPLGQLVNEIGGGTITGRP-VKAVQVGGPLGAYFPV-SLFDTLFDYEAFTTAGGLIGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D + D+++       F   ESCG+CTPCR G+   +  ++++  GI  +R   L
Sbjct: 414 AGIVVFDDTADMLRQARFALEFCAVESCGKCTPCRIGSTRGVETVDKISLGIEAERNTAL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++ + ++  ++CALG    +P+   +++F
Sbjct: 474 LEDLCETMKFGSLCALGGFTPYPVMSALRHF 504


>gi|160878249|ref|YP_001557217.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160426915|gb|ABX40478.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 628

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 148/400 (37%), Positives = 233/400 (58%), Gaps = 8/400 (2%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +S+++ ++ G +  V K L +   + I++E+  S LRGRGG GF TG KW+ + +  
Sbjct: 154 INAESINEYIAMGGYQAVAKALFDMTSESIVDEISDSYLRGRGGGGFPTGKKWAQVLRQ- 212

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           ++   Y+V N DE +PG   DR +M  +PH +IEG +IA  A  AH  +IYVR E+    
Sbjct: 213 TEETKYVVCNGDEGDPGAFMDRSMMEGDPHRMIEGMIIAGIATKAHYGYIYVRAEYPLAV 272

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             L+ A+++  + GLLG N    G+   + +  GAGA++CGE +AL  S+EG +G PR+K
Sbjct: 273 HRLETAIEQARSLGLLGCNILGSGFSFALKISQGAGAFVCGEGSALTASIEGNRGMPRVK 332

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PP     GL+  PT +NNVE+   VP+I+ +GA WY  +G E N GTK F+++G+V    
Sbjct: 333 PPRTVEKGLFEKPTVLNNVETFCNVPSIILKGADWYKTYGLEKNYGTKAFALTGNVMNTG 392

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI---MDYDGLK 309
            +E  M  T  ++I    GG++GG     AV  GG S  CL        +   +D+D LK
Sbjct: 393 LIEVPMGTTLRKVIYDIGGGVKGG--EFKAVQIGGPSGGCLVLNAENDHLDMPLDFDSLK 450

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
           ++G+ +G+  ++VM+  + +++       F ++ESCG+C PCREGT  M+ ++  +V+G 
Sbjct: 451 KVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCVPCREGTKRMLELLTDIVEGR 510

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
                +DLL E+++ I    +C LG  AA P+   IK FR
Sbjct: 511 GTLEHLDLLEELAETISATALCGLGKTAASPVVSTIKYFR 550


>gi|152981173|ref|YP_001355343.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium
           sp. Marseille]
 gi|151281250|gb|ABR89660.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium
           sp. Marseille]
          Length = 518

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 145/409 (35%), Positives = 220/409 (53%), Gaps = 5/409 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      SL D ++   +  + K +      I+ EV  SGLRGRGGA F
Sbjct: 99  LKKQERLQFVRVGITDPVSLEDYLAHDGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    + +  Y+  NADE + GT  DR +M  +P  LIEG  IA  A+ A  
Sbjct: 159 PTGIKWKTVLGAEAAQ-KYIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVKATE 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L  A+    A+G LG N    G   ++ V   AGAY+CGEETA+L
Sbjct: 218 GYIYVRSEYPHSIANLNEAIVAANAAGYLGENILGSGRTFNLQVRKAAGAYVCGEETAML 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV S++ VP IL RGA +Y  +G   +RGT
Sbjct: 278 ESIEGKRGMVRAKPPLPALQGLFGQPTVINNVISLSAVPLILSRGAEFYKNYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ Y   VE++  +T  EL+    GG   G   + AV  GG     +P   + 
Sbjct: 338 LPMQLAGNLKYGGLVEKAFGVTLRELLYDFGGGSESGRP-IRAVQVGGPLGAYMPE-SLF 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+    + S +G   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 396 DTPFDYEAFAAVASTVGHGGLVAFDDTVDMAKQARYAMHFCAEESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            VM++++    + ++I LL ++   +   ++CA+G+   +P+   + +F
Sbjct: 456 EVMDKIIANQNRPQQIHLLRDLCDVMVTGSLCAMGNMTPFPVLSALNHF 504


>gi|319937320|ref|ZP_08011727.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
 gi|319807686|gb|EFW04279.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
          Length = 597

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 154/411 (37%), Positives = 233/411 (56%), Gaps = 12/411 (2%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  +++ + +++  +  + K+L E     +++E+K SGLRGRGG GF T
Sbjct: 114 QKRIALHNCGVIDPENIQEYIAKDGYFALGKVLTEMKPQEVVDEIKESGLRGRGGGGFPT 173

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW F      D   Y++ NADE +PG   DR I+   PH++IE   IA +AIGAH  +
Sbjct: 174 GLKWQFALNEPGDE-KYVICNADEGDPGAFMDRSILEGNPHSVIEAMEIAGYAIGAHHGY 232

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+R E+    E L+ A+ E    GLLG++    G+  D+ +  GAGA++CGEETAL++S
Sbjct: 233 IYIRAEYPIAVERLKHAIQEAKELGLLGNDIFGSGFHFDLEIRLGAGAFVCGEETALIQS 292

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++G P  KPPFPA+ G++G PT +NNVE+ A +  I+  GA W+   G E + GTK+
Sbjct: 293 IEGERGMPSPKPPFPAHKGVWGKPTIINNVETYANIAQIITHGAKWFRSIGTETSAGTKV 352

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN---LLAVIPGGSSVPCLPAGQM 298
           F++ G +     VE  M  T  E+I +    I GG  N     AV  GG S  CL   Q+
Sbjct: 353 FALGGKIVNTGLVEVPMGTTLREVIYE----IGGGCPNRKSFKAVQTGGPSGGCLTESQL 408

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              I  +D L ++GS +G+  +IV+D    ++        F   ESCG+C+PCR GT  M
Sbjct: 409 DTPI-GFDELVKLGSMMGSGGMIVLDEDNCMVDVARFYMDFIVDESCGKCSPCRIGTKRM 467

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + ++E + +G      +D L  ++  I+   +C LG +A  P+   I  FR
Sbjct: 468 LELLEDICEGRGTMETLDELEVLATTIKDTALCGLGQSAPNPVLSTILQFR 518


>gi|13474499|ref|NP_106068.1| NAD-dependent formate dehydrogenase beta subunit [Mesorhizobium
           loti MAFF303099]
 gi|14025253|dbj|BAB51854.1| NAD-dependent formate dehydrogenase beta subunit [Mesorhizobium
           loti MAFF303099]
          Length = 518

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 148/393 (37%), Positives = 214/393 (54%), Gaps = 8/393 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL    S G    +   +      I+ +V  SGLRGRGGAGF TG+KW  +    S+R  
Sbjct: 117 SLDAYKSLGGLKGLQNAVAMAPADIVKQVTESGLRGRGGAGFPTGIKWKTVLDTTSER-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE +  T  DR IM  +P  LIEG  IA  A GA   F+Y+R E+     ++  
Sbjct: 176 YIVCNADEGDSATFADRMIMEGDPFVLIEGMAIAGIATGATKGFVYIRSEYPHAVATMNK 235

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           AV+    +G+LG N   S   +D++I V  GAGAY+CGEET+LL SLEGK+G  R KPP 
Sbjct: 236 AVEIARKAGVLGVNVLGSPNAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPL 293

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNV S+A VP I+ +GA++Y  FG   +RGT    I+G+V      E
Sbjct: 294 PAIQGLFGKPTVINNVISLASVPIIMDKGAAFYKDFGMGRSRGTIPIQIAGNVRNGGLFE 353

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
            +  +T  E+++   GG   G   + AV  GG      P   +     DY+   +    +
Sbjct: 354 TAFGLTLGEIVDDIGGGTATGRP-VKAVQVGGPLGAYFPR-ALFDTPFDYEEFAKRDGLI 411

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G A + V D + D++K       F   ESCG+CTPCR G+   +  ++RL  GI  ++ +
Sbjct: 412 GHAGITVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSTRGIETIDRLAAGIEPEKNL 471

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            L+ ++   ++  ++CALG    +P+   I +F
Sbjct: 472 ALVTDLCNTMKFGSLCALGGFTPYPVMSSITHF 504


>gi|194288743|ref|YP_002004650.1| NAD-dependent formate dehydrogenase subunit beta [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222578|emb|CAQ68581.1| NAD-dependent formate dehydrogenase beta subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 520

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 152/410 (37%), Positives = 222/410 (54%), Gaps = 5/410 (1%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q+R+     G+    SL D  +   +  +++ L      I+ EV  SGLRGRGGA 
Sbjct: 100 FLKRQERLTFARVGITDPLSLDDYRAHEGYAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    +    Y+V NADE + GT  DR +M  +P  LIEG  IA  A+GA 
Sbjct: 160 FPTGIKWKTVLGAQAAV-KYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVGAE 218

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      L++A+    A+G LG + +  G    + V  GAGAY+CGEETAL
Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG++G  R KPP PA  GL+G PT +NNV S+A VP IL RGA  Y  +G   +RG
Sbjct: 279 LESLEGRRGVVRAKPPLPALKGLFGQPTVINNVISLATVPVILARGAQCYRDYGMGRSRG 338

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE++  +T  EL+  + GG R G   + AV  GG     LP  + 
Sbjct: 339 TLPFQLAGNIRHGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESRF 397

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+     G  +G   ++V D + D+ K       F   ESCG+CTPCR G+   
Sbjct: 398 D-VPLDYEAYAAFGGVVGHGGIVVFDETVDMAKQARYAMEFCAIESCGKCTPCRIGSTRG 456

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + VM+R++ G    R + L+ ++   +   ++CA+G    +P+   +  F
Sbjct: 457 VEVMDRIIAGEQPVRHVQLVRDLCDTMLNGSLCAMGGMTPYPVLSALNEF 506


>gi|325845863|ref|ZP_08169061.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481769|gb|EGC84801.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 526

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 144/399 (36%), Positives = 222/399 (55%), Gaps = 8/399 (2%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G++     I +  R  II+ +K SGLRGRGGAGF TG KW        D   Y++ NADE
Sbjct: 68  GYFALNKAIFDLDRKEIIDIIKDSGLRGRGGAGFPTGRKWEAAFNQDID-TKYIICNADE 126

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR ++  +PH+++E   I + AIG+   +IYVR E+ +  +SLQ A+ +    
Sbjct: 127 GDPGAFMDRSVLEFDPHSVLEAMAICARAIGSKQGYIYVRAEYPKAVKSLQNAIKQAREY 186

Query: 147 GLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
            LLG N   S   +D+D+    GAGA++CGE TAL+ES+EGK+G PR K       GL+G
Sbjct: 187 NLLGENIMGSDFSFDIDL--RLGAGAFVCGEGTALMESIEGKRGMPRNKEFRTTVKGLWG 244

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
            PT +NNVE+ A +  I+ +G+SW+  FG E + GTK+F++ G V     VE  M  +  
Sbjct: 245 KPTVINNVETFANIAQIINKGSSWFRSFGTEKSPGTKVFALVGKVKESGLVEVEMGTSIK 304

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           +++     GI+       AV  GG S  C+P  ++     D++ LKE+GS +G+  ++VM
Sbjct: 305 KIVYDIGLGIQND-KKAKAVQTGGPSGGCIPT-KLFDTACDFESLKEIGSIMGSGGMVVM 362

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
           D    ++        F   ESCG+CTPCR G   +  +++ L KG A +  ++ L E+SK
Sbjct: 363 DEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKRLFEMLDDLTKGKANEETLEKLEELSK 422

Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +   ++C LG ++  PI   +  F+   +  + +   C
Sbjct: 423 IVSETSLCGLGQSSPNPIISTMYYFKDEYQAHVGENKTC 461


>gi|81299090|ref|YP_399298.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942]
 gi|3947771|emb|CAA73873.1| hoxF [Synechococcus elongatus PCC 6301]
 gi|81167971|gb|ABB56311.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942]
          Length = 534

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 220/361 (60%), Gaps = 13/361 (3%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           + TG+KW+ + K+ SDR  ++V N DE +PG   DR ++  +PH +IEG  IA++A+GA+
Sbjct: 173 YPTGLKWATVAKMPSDR-KFVVCNGDEGDPGAFMDRSVLESDPHQVIEGMAIAAYAVGAN 231

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEET 176
             ++YVR E+      L  A+ +    GLLG+   +S+  +D+++ +  GAGA++CGEET
Sbjct: 232 FGYLYVRAEYPLAIARLNQAIRQARRRGLLGNSVLDSRFSFDLEVRI--GAGAFVCGEET 289

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S++G++G PR++PP+PA  GL+G PT +NNVE+ A +  I+ +GA W++  G   +
Sbjct: 290 ALIHSIQGERGVPRVRPPYPAESGLWGHPTLINNVETFANIAPIVEQGADWFAAIGTPTS 349

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F+++G +     +E  M I    +++    G+      + AV  GG S  C+P  
Sbjct: 350 KGTKVFALTGKLRNNGLIEVPMGIPLRSIVD----GMGIPESPVKAVQTGGPSGGCIPLA 405

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGT 355
           Q+   + DYD L ++GS +G+  ++VMD +TD++ AI R  + F + ESCG+C PCR GT
Sbjct: 406 QLDTPV-DYDSLIQLGSMMGSGGMVVMDENTDMV-AIARFYMEFCRSESCGKCIPCRAGT 463

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             +  ++ +L  G     ++  L ++   ++  ++C LG +A  PI   ++ FR   E R
Sbjct: 464 VQLHELLGKLSSGQGTAIDLQQLEDLCYLVKDTSLCGLGMSAPNPILSTLRWFRQEYESR 523

Query: 416 I 416
           +
Sbjct: 524 L 524


>gi|71906618|ref|YP_284205.1| NADH dehydrogenase [Dechloromonas aromatica RCB]
 gi|71846239|gb|AAZ45735.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Dechloromonas aromatica RCB]
          Length = 632

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 209/383 (54%), Gaps = 25/383 (6%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP------HYLVVNADESEPGTCKDRDI 97
           ++E+K + LRGRGGAGF+TG+KW    + C + P        +V NADE EPGT KDR +
Sbjct: 230 LDEIKRANLRGRGGAGFTTGLKW----EACRNAPLKAGAQRIVVCNADEGEPGTFKDRVL 285

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKL 155
           +   P  + EG  +A++A+GA   F+Y+RGE+    + L A +       LLG +     
Sbjct: 286 LSRNPDLVFEGMTVAAYAVGATRGFVYLRGEYRYMLDHLNAVLAHRRREKLLGKDILGLP 345

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G D DI +H GAGAY+CGEE+AL+ESLEGK+G PR +PPFP   G    PT VNNVE+ A
Sbjct: 346 GADFDIEIHVGAGAYVCGEESALIESLEGKRGTPRNRPPFPVTNGYLDQPTIVNNVETFA 405

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
               I   G  WY+  G +++ GTKL S+SG    P   E    ++  +++E  CG    
Sbjct: 406 AAALIALNGGDWYAAIGTKHSAGTKLLSVSGDCERPGIYEYPFGVSVRQVLED-CGA--- 461

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
              +  AV   G S  C+ A Q    ++ ++ +   G      A  V + + D+ +    
Sbjct: 462 --RDTQAVQVSGPSGICI-AEQEFDRVIGFEDIPTAG------AFTVFNNTRDMFEVARN 512

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
              F++HESCG CTPCR GT  +  +M++L  G+    +   + ++++ ++  + C LG 
Sbjct: 513 YVHFFQHESCGFCTPCRVGTSLLKNLMDKLHNGVGSPYDFAEIEKLNQLLQSMSHCGLGH 572

Query: 396 AAAWPIQGLIKNFRPLIEERIDQ 418
            A  P+   I+ FRP  E R+ Q
Sbjct: 573 TACNPVLDTIERFRPAYERRMAQ 595


>gi|53803282|ref|YP_114984.1| dehydrogenase subunit [Methylococcus capsulatus str. Bath]
 gi|53757043|gb|AAU91334.1| putative dehydrogenase subunit [Methylococcus capsulatus str. Bath]
          Length = 561

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 149/377 (39%), Positives = 213/377 (56%), Gaps = 39/377 (10%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  +++SGLRG GGAGF  G KW  +       P  + VN DE EPGT KDR  +  +P
Sbjct: 208 VIALLESSGLRGLGGAGFPVGRKWRIV--RAQPAPRLMAVNIDEGEPGTFKDRHYLERDP 265

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEF-------IRERESLQAAVDECYASGLLGSNSKL 155
           H  +EG +IA++A+G    +IY+R E+       +RE + L+ AV               
Sbjct: 266 HRFLEGMLIAAWAVGIESIYIYLRDEYAGCRQILLRELQQLREAVP-------------- 311

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G   +I +  GAGAYICGEE+A++ES+EGK+G PRL+PPF A VGL+G PT  +N+ES+ 
Sbjct: 312 GPLPEIQLRRGAGAYICGEESAMIESIEGKRGMPRLRPPFVAQVGLFGRPTLEHNMESLY 371

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            V  I+ RG  W++G GR + +G + FS+SG V  P        I+  ELI ++CGG+  
Sbjct: 372 WVRDIVERGPDWFTGHGRRDRKGLRSFSVSGRVRKPGVHLAPAGISVRELIAEYCGGMAE 431

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKA 332
           G +      PGG+S   LPA  +    +D+D L   G  +G+AAV+V    D++ D+   
Sbjct: 432 GHE-FYGYFPGGASGGILPA-SLGDLPLDFDTLTPYGCFIGSAAVVVFSTQDKARDLALN 489

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDLLYEVSKNIEGRTIC 391
             R   F+  ESCGQCTPCR GT     +M       AQ + +  LL E++  +   +IC
Sbjct: 490 AMR---FFAEESCGQCTPCRVGTAKAAALM-------AQPQWDRPLLEELAGAMSDASIC 539

Query: 392 ALGDAAAWPIQGLIKNF 408
            LG AAA P++  +K F
Sbjct: 540 GLGQAAANPLRCAMKYF 556


>gi|167755792|ref|ZP_02427919.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|237734759|ref|ZP_04565240.1| NADH dehydrogenase [Mollicutes bacterium D7]
 gi|167704731|gb|EDS19310.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|229382087|gb|EEO32178.1| NADH dehydrogenase [Coprobacillus sp. D7]
          Length = 599

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 147/387 (37%), Positives = 221/387 (57%), Gaps = 10/387 (2%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G++     + E     +++ +KASGLRGRGG GF  G+KW F       +  Y++ NADE
Sbjct: 140 GYFALAKVVSEMTPQEVVDVIKASGLRGRGGGGFPAGVKWQFALNE-PGKEKYVICNADE 198

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR I+   PH++IE   IA++AIGA+  +IY+R E+    E L  A+++    
Sbjct: 199 GDPGAFMDRSILEGNPHSVIEAMAIAAYAIGANHGYIYIRAEYPIAVERLNTALEQAREL 258

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           GL+G N  + G+D D+ +  GAGA++CGEETAL++S+EG++G P  KPPFPA+ G++G P
Sbjct: 259 GLIGKNIFESGFDFDLELRLGAGAFVCGEETALIQSIEGERGMPNPKPPFPAHKGVWGKP 318

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T +NNVE+ A +  I++ GA W+   G E + GTK+F++ G +     VE  M  T  E+
Sbjct: 319 TIINNVETYANIAQIIQHGAEWFRSIGTETSPGTKVFALGGKIVNTGLVEVPMGTTLREV 378

Query: 266 IEKHCGGIRGGWDN---LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
           I +    I GG  N     AV  GG S  CL   Q+   I  +D L ++GS +G+  +IV
Sbjct: 379 IYE----IGGGCPNHKRFKAVQTGGPSGGCLTEEQLDTPI-GFDELVKLGSMMGSGGMIV 433

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           +D    ++        F   ESCG+CTPCR GT  M+ ++E++  G      +D L  ++
Sbjct: 434 LDEDNCMVDVARFYMDFIVDESCGKCTPCRVGTKRMLELLEQICDGKGTMETLDELELLA 493

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFR 409
             I+   +C LG  A  P+   I  FR
Sbjct: 494 STIQDTALCGLGQTAPNPVLSTIHQFR 520


>gi|330501361|ref|YP_004378230.1| NADH dehydrogenase [Pseudomonas mendocina NK-01]
 gi|328915647|gb|AEB56478.1| NADH dehydrogenase [Pseudomonas mendocina NK-01]
          Length = 523

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 220/412 (53%), Gaps = 8/412 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    SL D ++   +  + + L    + I+ EV  SGLRGRGGA F
Sbjct: 101 LKRQERLTFARVGITDPLSLEDYIAHDGYRGLKRALGMTPEAIVAEVTESGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +   C     Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWRTVLG-CQAEQKYIVCNADEGDSGTFSDRMVMEDDPYVLIEGMTIAGLAVGATK 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+      L   +    A+G LG +    G    + +  GAGAYICGEETALL
Sbjct: 220 GYIYLRSEYPHAEAVLLETIARATAAGYLGDDVLGSGKAFHLELRRGAGAYICGEETALL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +G ++Y  +G   + GT
Sbjct: 280 ESIEGKRGTVRPKPPLPAIEGLFGKPTVINNVISLASVPIILDKGGAYYKDYGMGRSLGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++     +E++  IT  EL+ ++ GG   G   + AV  GG     LP  Q  
Sbjct: 340 LPIQLTGNIARGGLIEKAFGITLRELLYEYGGGSASGR-PIRAVQVGGPLGAYLPESQFD 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ LG   ++V D + D+         F   ESCG+CTPCR G+    
Sbjct: 399 -TPLDYEAFAALGAVLGHGGIVVFDDTVDMADMARYAMEFCAVESCGKCTPCRIGSTRGE 457

Query: 360 RVMERLVKGIA---QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            ++ +++   +   Q   I+LL  +   + G ++CALG    +P+   I +F
Sbjct: 458 ELLSQIIVARSEGPQPGRIELLKSLCDTMLGASLCALGGMTPYPVMSAINHF 509


>gi|323526974|ref|YP_004229127.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1001]
 gi|323383976|gb|ADX56067.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1001]
          Length = 521

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 218/392 (55%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L+   D     +  SGLRGRGGA F  G+KW  + +       
Sbjct: 116 SIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAFPAGIKWRTV-RAARAAQK 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA   +IYVR E+     +L+A
Sbjct: 175 YIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGASAGYIYVRSEYPHSIATLEA 234

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+ +  A+G LG +S LG     ++ V  GAG+Y+CGEETALLESLEGK+G  R KPP P
Sbjct: 235 AIAKARAAGWLG-DSVLGCPLRFELFVAKGAGSYVCGEETALLESLEGKRGIVRAKPPVP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGLYG PT +NNV ++A VP I  RGA++Y  FG   +RGT  F ++G+V     VE 
Sbjct: 294 ALVGLYGQPTVINNVITLATVPIIFARGAAYYKDFGMGRSRGTLPFQLAGNVKQGGLVEL 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     AV  GG     LP  Q     MDY+    +G+ +G
Sbjct: 354 AFGVTLRELLYDFGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              ++V D ++++ +       F   ESCG+CTPCR G+   + V+ R+  G    R++ 
Sbjct: 412 HGGLVVHDDTSNLAELAQYAMHFCAIESCGKCTPCRIGSTRGVEVIGRIRNGDTSTRQVQ 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 472 LLRDLCDTMVSGSLCAMGGMTPYPVLSALDHF 503


>gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 594

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 158/424 (37%), Positives = 245/424 (57%), Gaps = 14/424 (3%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFST 62
           + R   N   +  +++ D +    +  ++K+L+    RD +I E+ ASGLRGRGG GF T
Sbjct: 114 ERRALKNCGVIDPENIEDFLKNDGYKGIEKVLKTMSNRD-VIKEIFASGLRGRGGGGFFT 172

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW     + +++  Y+V NADE +PG   DR I+  +PH++IEG +IA +AIGA    
Sbjct: 173 GIKWEIASNIEAEQ-KYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKGL 231

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLE 180
           +Y+R E+      L  A++     G LG N  LG  ++ DI +  GAGA++CGEETAL+ 
Sbjct: 232 VYIRAEYPLAIHRLSVAIEAARKKGFLGKNI-LGTDFEFDIELKFGAGAFVCGEETALIH 290

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G+P  KPP+PA  G +  PT VNNVE++  VP IL  G  W+   G E + GTK
Sbjct: 291 SMEGRRGEPTSKPPYPAEKGFWDKPTVVNNVETLVNVPGILLYGKEWFREVGTEKSPGTK 350

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +N    VE  M I+  E+I +  GGI+       AV  GG S  CL    +  
Sbjct: 351 VFALAGKINNVGLVEVPMGISLREIIFEIGGGIKDN-KKFKAVQTGGPSGGCLTEKDLDT 409

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMM 359
            I D+D L + GS +G+  ++VMD   D + AI +  + F   ESCG+CTPCR G   + 
Sbjct: 410 PI-DFDTLSKKGSIMGSGGMVVMDED-DCMVAIAKFFLEFTLDESCGKCTPCRVGNTRLY 467

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF-RPLIEERIDQ 418
            +++++ +G     ++ LL E+S+ I+  ++C LG  +A P+   +  F    +E  +D+
Sbjct: 468 EMLDKITQGRGTLEDLHLLQELSEGIKATSLCGLGQTSANPVLSTLAQFYDEYVEHVVDK 527

Query: 419 YHRC 422
             RC
Sbjct: 528 --RC 529


>gi|134295064|ref|YP_001118799.1| NADH dehydrogenase (quinone) [Burkholderia vietnamiensis G4]
 gi|134138221|gb|ABO53964.1| formate dehydrogenase beta subunit [Burkholderia vietnamiensis G4]
          Length = 525

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 146/410 (35%), Positives = 225/410 (54%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D ++      +   L    D   + +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLAHDGLAGLKNALAMDGDAACDTLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQAAATQ-KYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IYVR E+    ++L+ A++    +G LG++  LG  +  D+ V  GAG+Y+CGEETAL
Sbjct: 218 GYIYVRSEYPHAIKTLETALERAREAGWLGAHV-LGSAHAFDLHVAKGAGSYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GLYG PT +NNV ++A  P I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLYGKPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE +  +T  EL+  + GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPARAAQV-GGPLGTYLPEHQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-VPLDYEAYAAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+  G   +R+I LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIRNGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|150398096|ref|YP_001328563.1| NADH dehydrogenase (quinone) [Sinorhizobium medicae WSM419]
 gi|150029611|gb|ABR61728.1| NADH dehydrogenase (quinone) [Sinorhizobium medicae WSM419]
          Length = 518

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 150/392 (38%), Positives = 216/392 (55%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G    +++ +      I+ EV  SGLRGRGGAGF TG+KW  + +    R  
Sbjct: 117 SLDDYRAHGGLRGLERAVVMQPAAIVAEVTESGLRGRGGAGFPTGIKWKTVLETPGAR-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA   +IY R E+      + A
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGATKGYIYTRSEYPHAIAVMSA 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           AV+   A+G+LG+ S LG  +  D+ V  GAGAY+CGEET+LL SLEGK+G  R KPP P
Sbjct: 236 AVEIARAAGVLGT-SVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GL+  PT +NNV S+A VP IL +GA +Y  FG   +RGT    I+G+V +    E 
Sbjct: 295 AHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRGTIPLQIAGNVRHGGLFET 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  E++++  GG   G   + AV  GG      P   +     DY+        +G
Sbjct: 355 AFGLTLGEIVDEIGGGTASGRP-VKAVQVGGPLGAYFPR-ALFDTPFDYEAFAARDGLIG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
            A ++V D + D++K       F   ESCG+CTPCR G+   + V + +  GI  ++   
Sbjct: 413 HAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSIRGVEVADAIAAGIEPEKNRV 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   ++  ++CALG    +P+   + +F
Sbjct: 473 LLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 504


>gi|148259851|ref|YP_001233978.1| NADH dehydrogenase (quinone) [Acidiphilium cryptum JF-5]
 gi|326403221|ref|YP_004283302.1| putative formate dehydrogenase beta subunit [Acidiphilium
           multivorum AIU301]
 gi|146401532|gb|ABQ30059.1| formate dehydrogenase beta subunit [Acidiphilium cryptum JF-5]
 gi|325050082|dbj|BAJ80420.1| putative formate dehydrogenase beta subunit [Acidiphilium
           multivorum AIU301]
          Length = 516

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 146/391 (37%), Positives = 212/391 (54%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D    G +  ++  L  G    +  VK SGLRGRGGAGF TG+KW  + +  +DR  
Sbjct: 115 SLEDYRHHGGYKGLEAALSIGPAATVAAVKESGLRGRGGAGFPTGIKWETVARAPADR-K 173

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA   ++Y+R E+      ++ 
Sbjct: 174 YVVCNADEGDSGTFADRLIMEADPFMLIEGMTIAGVAVGATKGYVYIRSEYPLAIRMMRR 233

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++    +G LG   +   +D D+ V  GAGAY+CGEET+LLESLEGK+GQ R KPP PA
Sbjct: 234 AIEIAERAGYLGKGINGSAHDFDLEVRVGAGAYVCGEETSLLESLEGKRGQVRPKPPLPA 293

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT +NN  S+A VP IL  GA  Y+  G   +RGT    ++G+V +    E +
Sbjct: 294 IEGLFGRPTIINNTISLASVPFILAEGAKRYAEMGYGRSRGTMPVQLAGNVKHGGLFECA 353

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +T  EL+    GG   G   + AV  GG      P   M     DY+   +    +G 
Sbjct: 354 FGVTLGELVNDIGGGTASGRP-VKAVQAGGPLGAYFPV-SMFDTPYDYEAFAKRDGLIGH 411

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ +       F   ESCG+CTPCR G+   +   +R+  GI  +  + L
Sbjct: 412 GGLVVFDDTADMAQMARFAMEFCALESCGKCTPCRIGSTRGVETFDRIRAGIEPETNLAL 471

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++ + ++  ++CALG    +P+   I +F
Sbjct: 472 VRDLCETMKFGSLCALGGFTPYPVLSAINHF 502


>gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 640

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 151/408 (37%), Positives = 228/408 (55%), Gaps = 5/408 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ D + RG +  + K L     + ++ EV  + LRGRGG GF  G KW    +  
Sbjct: 146 INPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGGGFPAGKKWR-TTRDA 204

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +D   Y++VN DE +PG   DR IM   PH ++EG  I +FAIGA   +IYVR E+    
Sbjct: 205 ADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAV 264

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E+L AA+ +    GLLG N    G+D  + VH GAGA++ GE +AL+ ++EG+ G+PR K
Sbjct: 265 ENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 324

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
               A  GL+  P+ +NNVE+ A VP I+ +GA W+   G E ++GTK+F++ G VN   
Sbjct: 325 YIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSKGTKIFALVGKVNNTG 384

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            VE  M  T  ++I K  GG+R G   + AV  GG S  C+P   +   + DYD L ++G
Sbjct: 385 LVEVPMGTTLRDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDALSKLG 442

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S +G+  +I+MD  T ++        F   ESCG+C PCREG   ++ ++ R+ +G    
Sbjct: 443 SMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVDILTRITEGKGTM 502

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            ++D L ++S  +    +CALG  A  P+   +K FR    + I   H
Sbjct: 503 VDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKH 550


>gi|222111968|ref|YP_002554232.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Acidovorax ebreus TPSY]
 gi|221731412|gb|ACM34232.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax ebreus TPSY]
          Length = 661

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 150/418 (35%), Positives = 224/418 (53%), Gaps = 50/418 (11%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM------- 69
           G +L+  +++GH            D ++  ++ SGLRG GGAGF  G KW  +       
Sbjct: 233 GYALAAGLAQGHVPA---------DGVLAAMEDSGLRGLGGAGFPAGRKWRIVREQAALA 283

Query: 70  -----------------PKVCSDRPH--YLVVNADESEPGTCKDRDIMRHEPHTLIEGCV 110
                            P+   +R     + VN DE EPGT KDR  +  +PH  +EG +
Sbjct: 284 GRQAAPSEAAAPSAGSGPREAGERGSVALMAVNIDEGEPGTFKDRTYLERDPHRFLEGVL 343

Query: 111 IASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAY 170
           +A+  +G    +IY+R E+   R  LQAA+ E  A               I +  GAGAY
Sbjct: 344 VAAQVVGTAEVYIYLRDEYHGCRALLQAAIAELQADPPCALPR-------IELRRGAGAY 396

Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230
           ICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT  +N E++  V  I+ +G  W++ 
Sbjct: 397 ICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRDIVEKGPQWFAS 456

Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
           FGR   RG + FS+SG V  P        IT  EL++++CGG+  G   L A +PGG+S 
Sbjct: 457 FGRHGRRGLRSFSVSGRVKEPGVKLAPAGITLRELVDEYCGGMAEG-HVLYAYLPGGASG 515

Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
             LPA ++    +D+D L+  G  +G+AAVIV+ +      A   +  F+ HESCGQCTP
Sbjct: 516 GILPA-RLADVPLDFDTLQPHGCFIGSAAVIVLSQHDRARDAALNMMRFFAHESCGQCTP 574

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           CR GT    ++M+      A   + D L ++++ +   +IC LG AA  PI+ + K F
Sbjct: 575 CRVGTAKAAQLMQ------APLWDEDTLDDLAQVMADASICGLGQAAPNPIRCIHKYF 626


>gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
          Length = 640

 Score =  246 bits (627), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 151/408 (37%), Positives = 228/408 (55%), Gaps = 5/408 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ D + RG +  + K L     + ++ EV  + LRGRGG GF  G KW    +  
Sbjct: 146 INPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGGGFPAGKKWR-TTRDA 204

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +D   Y++VN DE +PG   DR IM   PH ++EG  I +FAIGA   +IYVR E+    
Sbjct: 205 ADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAV 264

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E+L AA+ +    GLLG N    G+D  + VH GAGA++ GE +AL+ ++EG+ G+PR K
Sbjct: 265 ENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 324

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
               A  GL+  P+ +NNVE+ A VP I+ +GA W+   G E ++GTK+F++ G VN   
Sbjct: 325 YIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSKGTKIFALVGKVNNTG 384

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            VE  M  T  ++I K  GG+R G   + AV  GG S  C+P   +   + DYD L ++G
Sbjct: 385 LVEVPMGTTLRDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDALSKLG 442

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S +G+  +I+MD  T ++        F   ESCG+C PCREG   ++ ++ R+ +G    
Sbjct: 443 SMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVDILTRITEGKGTM 502

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            ++D L ++S  +    +CALG  A  P+   +K FR    + I   H
Sbjct: 503 VDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKH 550


>gi|15966763|ref|NP_387116.1| putative NAD-dependent formate dehydrogenase beta subunit protein
           [Sinorhizobium meliloti 1021]
 gi|307301591|ref|ZP_07581350.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti BL225C]
 gi|15076035|emb|CAC47589.1| Putative NAD-dependent formate dehydrogenase beta subunit
           [Sinorhizobium meliloti 1021]
 gi|306903289|gb|EFN33878.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti BL225C]
          Length = 518

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 216/392 (55%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  +      +++ +      I+ EV  SGLRGRGGAGF TG+KW  + +    R  
Sbjct: 117 SLEDYRAHRGLLGLERAIAMQPAAIVAEVTESGLRGRGGAGFPTGIKWKTVLEARGPR-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA   +IY R E+      + A
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGATKGYIYTRSEYPHAIAVMSA 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A++   A+G+LG+ S LG  +  D+ V  GAGAY+CGEET+LL SLEGK+G  R KPP P
Sbjct: 236 AIEIARAAGVLGA-SVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GL+  PT +NNV S+A VP IL +GA +Y  FG   +RGT    I+G+V +    E 
Sbjct: 295 AHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRGTIPLQIAGNVKHGGLFET 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  E++++  GG       + AV  GG      P   +     DY+        +G
Sbjct: 355 AFGLTLGEIVDEIGGGT-ASARPVKAVQVGGPLGAYFPR-ALFDTPFDYEAFAARDGLIG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
            A ++V D + D++K       F   ESCG+CTPCR G+   + V +R+  GI  ++  +
Sbjct: 413 HAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVEVADRIAAGIEPEKNRE 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   ++  ++CALG    +P+   + +F
Sbjct: 473 LLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 504


>gi|114571227|ref|YP_757907.1| NADH dehydrogenase (quinone) [Maricaulis maris MCS10]
 gi|114341689|gb|ABI66969.1| formate dehydrogenase beta subunit [Maricaulis maris MCS10]
          Length = 511

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 154/408 (37%), Positives = 216/408 (52%), Gaps = 5/408 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L DQ R+     GL     L+   + G    + +        I+  VK SGLRGRGGAGF
Sbjct: 98  LADQQRLIFARCGLDDPLDLAAYQAGGGLAGLSRARALAPGVIVEAVKTSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW    K   D   YL  NADE + GT  DR +M  +P TLIEG  IA+ AIGA  
Sbjct: 158 PAGIKWETAAKATVD-ATYLCCNADEGDSGTYADRLLMEGDPFTLIEGMCIAARAIGATR 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
             +Y+R E+     +L+AA+     +GL    S  G   DI V  GAGAYICGEE+++L 
Sbjct: 217 GLVYLRSEYPDAIRTLKAAIRIWREAGLFQGLSD-GDGFDIEVRTGAGAYICGEESSMLN 275

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+ R KPP PA  GL+G PT VNNV ++A VP IL  G   Y  FG   +RGT+
Sbjct: 276 SLEGKRGEVRAKPPIPAISGLFGQPTIVNNVLTLASVPWILEHGGEAYRDFGTGRSRGTQ 335

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            F ++G V     +E +  ++   LIE   GG R G   L AV  GG     L    +  
Sbjct: 336 AFQLAGDVKQGALLELAFGVSLRTLIEDFGGGTRSGR-PLRAVQVGGPLGAYLADADLDV 394

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MDY+ L  +G+ LG   ++V + + D+ +       F   ESCG+CTPCR G      
Sbjct: 395 A-MDYEALAAIGAMLGHGGIVVFNDTVDMARQARFAMEFCAIESCGKCTPCRVGATRGRE 453

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            +++++ G A    + L+ ++ + +   ++CA+G     P++  I+ F
Sbjct: 454 TLDKIIAGEAVADNLALIEDLCELMTDGSLCAMGGLTPMPVRSAIQRF 501


>gi|160893746|ref|ZP_02074530.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50]
 gi|156864731|gb|EDO58162.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50]
          Length = 661

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 150/418 (35%), Positives = 237/418 (56%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +++++ ++ G +  + K+L       +I  +  S LRGRGG GF TG KW
Sbjct: 182 VLKNCGHIDAENINEYLAVGGYQALRKVLFTMEPSEVIQVISDSNLRGRGGGGFPTGYKW 241

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             + +  +++  Y+V N DE +PG   DR +M  +PH ++EG +IA++A+GA   ++YVR
Sbjct: 242 QQVARQ-AEKIRYVVCNGDEGDPGAFMDRSVMEGDPHKMLEGMIIAAYAVGAQEGYVYVR 300

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEG 184
            E+      L+ A+ +   +G LG +  LG D    +H   GAGA++CGE +AL  S+EG
Sbjct: 301 AEYPLAVSRLKTAIAQAEEAGFLGEDI-LGSDFSFHIHINRGAGAFVCGEGSALTASIEG 359

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           ++G PR KPP     GL+  PT +NNVE+ A V  I+  GA WY   G E + GTK F++
Sbjct: 360 QRGMPRTKPPRTVEQGLFAKPTVLNNVETYANVSMIILNGADWYKSIGPEKSPGTKAFAL 419

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V     +E  M     E++    GG++     L AV  GG S  CL    +  + +D
Sbjct: 420 TGSVKNTGLIEVPMGTKLREIVYDIGGGLKDDIP-LKAVQIGGPSGGCLVTDDLEVS-LD 477

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D LK  G+ +G+  ++VMD +T +++       F ++ESCG+C PCREGT  M+ ++ER
Sbjct: 478 FDSLKSKGAMIGSGGLVVMDENTCLVEVARFFMNFTQNESCGKCVPCREGTKRMLEILER 537

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR-PLIEERIDQYHR 421
           +V G     ++DLL E+ + I    +C LG +AA P+   +KNFR   IE  +D+  R
Sbjct: 538 IVAGNGTLEDLDLLEELGQAITDTALCGLGKSAALPVLSTLKNFRQEYIEHVVDKRCR 595


>gi|283853098|ref|ZP_06370353.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
 gi|283571496|gb|EFC19501.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
          Length = 491

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 148/406 (36%), Positives = 230/406 (56%), Gaps = 5/406 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q RI T   G +  +++ D ++   ++ + K+L      +++ +K SGLRGRGG GF TG
Sbjct: 10  QLRIATRNCGFIDPENIDDYIALRGYEGLAKVLTMSPADVVDLIKRSGLRGRGGGGFPTG 69

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW       +D+  Y+V NADE +PG   DR ++  +PH+++E   I  +AIGA    +
Sbjct: 70  VKWGIALANAADQ-KYMVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATVGTV 128

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    + L+ A+D+    GLLG+N    G+D DI + +GAGA++CGEETAL+ S+
Sbjct: 129 YIRAEYPLAIKRLKKAIDDARDYGLLGTNIFGSGFDFDIEIKYGAGAFVCGEETALIRSM 188

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++G+P  KPPFPA  G +  PT VNNVE+ A VP I+  GA W++G G    +GTK+F
Sbjct: 189 EGQRGEPVSKPPFPAQSGYWEKPTIVNNVETFANVPAIILNGADWFAGIGTATTKGTKVF 248

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G +     +E  M IT  E+I    GG   G     AV  GG S   L    +  AI
Sbjct: 249 ALAGKIQNVGLIEVPMGITLREVIFDIGGGCPDG-KAFKAVQTGGPSGGALSYKDLDVAI 307

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            DY+ L    S +G+  ++VMD    ++        F   E+CG+CTPCR G+  +  ++
Sbjct: 308 -DYESLIARKSMMGSGGMVVMDEDDCMVSIAKFFLDFTMDETCGKCTPCRVGSKRLYEIL 366

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +++ KG   + ++D L  +S+ I+   +C LG     PI   +  F
Sbjct: 367 DKITKGKGTQADLDRLKSLSEVIKDTALCGLGQTMPNPILSTMDTF 412


>gi|31747592|gb|AAO38266.1| NADP-reducing hydrogenase subunit C [Leptospirillum ferrooxidans]
          Length = 617

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 148/409 (36%), Positives = 232/409 (56%), Gaps = 10/409 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           S+ D ++   +  + K+L     + +I+EV  SGLRGRGG GF TG+KW+   K      
Sbjct: 150 SIDDYIAMDGYAALRKVLSSMTPEQVIDEVTKSGLRGRGGGGFPTGVKWNLTRKAPGPE- 208

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESL 136
            Y+V NADE +PG   DR ++  +PH++IEG ++A+FA+G A   +IY R E+    + L
Sbjct: 209 KYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMILAAFAVGHARKGYIYCRAEYPLAIKRL 268

Query: 137 QAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           Q A+++      LG N   S L +D++I    GAGAY+CGEETALL SL G++G P  KP
Sbjct: 269 QKAINDARERNFLGDNILGSDLSFDLEI--KEGAGAYVCGEETALLASLMGERGMPWPKP 326

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G P+ +NNVE++A +  I+  G  WY+ +G E  +GTK F+++G +     
Sbjct: 327 PFPAQKGVWGKPSVINNVETLANIGHIILGGGEWYASYGSEKTKGTKTFALTGSIKNTGL 386

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +E        E++    GG+        A   GG S  C+P   +   + D++ +   G+
Sbjct: 387 IEVPAGTPLREIVFSIGGGMVEKKIPFKAAQLGGPSGGCIPTSGLDTPV-DFENVVSAGA 445

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +G+  ++VMD +  I+        F + ESCG+CTPCR G+  M+ ++ R+ +G  Q+ 
Sbjct: 446 IMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSKIMLDILTRITEGKGQEG 505

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           ++D L  +S  I+  ++C LG AA  P+   I+ FR   E  I +  RC
Sbjct: 506 DLDELVRLSMYIKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI-RDKRC 553


>gi|307824840|ref|ZP_07655063.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacter tundripaludum SV96]
 gi|307734198|gb|EFO05052.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacter tundripaludum SV96]
          Length = 609

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 141/387 (36%), Positives = 212/387 (54%), Gaps = 21/387 (5%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTC 92
            ++G    + E+  SGLRGRGGAGF T +KW F    CS+      Y+V NADE EPGT 
Sbjct: 189 FKRGIKETLKEIDYSGLRGRGGAGFKTAIKWQF----CSEEQQTERYVVCNADEGEPGTF 244

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
           KDR ++      + EG  + +  IGA   F+Y+RGE++   + LQ+ +++   + LLG+N
Sbjct: 245 KDRVLLNAYADQVFEGMTVCAAIIGAKQGFLYLRGEYLHLYDKLQSILEQRRQNSLLGNN 304

Query: 153 -SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
               G D DI +  GAGAYICGEE+AL+ESLEGK G PR +PP+P   G  G PT VNNV
Sbjct: 305 ILDTGLDFDIEICLGAGAYICGEESALIESLEGKAGIPRNRPPYPVTQGYLGKPTVVNNV 364

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E+      I   G+ W++  G E ++GTK+ SISG    P   E     T   ++   CG
Sbjct: 365 ETFLAAAGIAVNGSDWFANIGTEKSKGTKILSISGDCARPGIYEYPFGTTIQTIL-NDCG 423

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                 D++L V  GG S   + + Q     + ++ L   GS       I+ + S +I+ 
Sbjct: 424 A-----DDVLGVQVGGPSGTFI-SNQEFDRKLAFEDLATGGS------FIIFNSSRNILD 471

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
            +   + F+ HESCG CTPCR GT  + + ++++V+G     ++  L E+ + ++  + C
Sbjct: 472 MVHNFAHFFAHESCGFCTPCRVGTSLLQKQIDKIVEGHGSAGDVVALEELCQLVKNYSHC 531

Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            LG  AA PI   ++ +  L + R+ +
Sbjct: 532 GLGQTAANPILTTLERYPDLYQSRLKE 558


>gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
 gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
          Length = 640

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 151/408 (37%), Positives = 227/408 (55%), Gaps = 5/408 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +++ D + RG +  + K L     + ++ EV  + LRGRGG GF  G KW       
Sbjct: 146 INPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGGGFPAGKKWRTTHDA- 204

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +D   Y++VN DE +PG   DR IM   PH ++EG  I +FAIGA   +IYVR E+    
Sbjct: 205 ADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAV 264

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E+L AA+ +    GLLG N    G+D  + VH GAGA++ GE +AL+ ++EG+ G+PR K
Sbjct: 265 ENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSALMTAIEGRVGEPRPK 324

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
               A  GL+  P+ +NNVE+ A VP I+ +GA W+   G E ++GTK+F++ G VN   
Sbjct: 325 YIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSKGTKIFALVGKVNNTG 384

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            VE  M  T  ++I K  GG+R G   + AV  GG S  C+P   +   + DYD L ++G
Sbjct: 385 LVEVPMGTTLRDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDALSKLG 442

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S +G+  +I+MD  T ++        F   ESCG+C PCREG   ++ ++ R+ +G    
Sbjct: 443 SMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVDILTRITEGKGTM 502

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            ++D L ++S  +    +CALG  A  P+   +K FR    + I   H
Sbjct: 503 VDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKH 550


>gi|160936107|ref|ZP_02083480.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440917|gb|EDP18641.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1033

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 157/409 (38%), Positives = 237/409 (57%), Gaps = 5/409 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKV 72
           ++  SL   +SR  +  + + L E     ++ E+KA+GLRGRGGAGF TG+KW   M  V
Sbjct: 146 MEYASLEAYISRDGYGALARALSEMTPAQVVEEMKAAGLRGRGGAGFPTGVKWEAGMKAV 205

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
             D   ++V NADE +PG   DR I+  +PH++IEG ++  +AIGA   ++YVR E+   
Sbjct: 206 SEDGRKFMVCNADEGDPGAFMDRSILEGDPHSIIEGMMLGGYAIGASKGYVYVRAEYPIA 265

Query: 133 RESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
            E L  A+D+   +G+LG N    G+  D+ +  GAGA++CGEET+LL S+EGK+G+PR 
Sbjct: 266 VERLGNAIDQARKAGILGENVMGSGFSFDLEIRIGAGAFVCGEETSLLASIEGKRGEPRQ 325

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFP   GL+  PT +NNVE++A    I+  G+ WY GFG E + GTK+F+++G +   
Sbjct: 326 KPPFPFEKGLFESPTIINNVETLANAAPIILNGSQWYRGFGTEKSAGTKVFALAGDIVNA 385

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             +E  M     ++I K  GG   G     A+  GG S  CL    +   + DY+ L  +
Sbjct: 386 GIIEVPMGTILGDIIYKI-GGGIIGGKKFKAIQSGGPSGGCLTKTHLNTPV-DYESLSSL 443

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  +IVM+  T ++        F   ESCG+C PCR GT  M+ ++ER+ +G  Q
Sbjct: 444 GAIMGSGGLIVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTRRMLEILERITEGKGQ 503

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             +++LL E++  I+   +C LG  A  P+   +K FR   E  I + H
Sbjct: 504 PEDLELLEELAGTIQQTAMCGLGQTAPNPVLSTLKYFRSEYEAHIYEKH 552


>gi|146305428|ref|YP_001185893.1| NADH dehydrogenase (quinone) [Pseudomonas mendocina ymp]
 gi|145573629|gb|ABP83161.1| formate dehydrogenase beta subunit [Pseudomonas mendocina ymp]
          Length = 523

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 220/412 (53%), Gaps = 8/412 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    SL D ++   +  + + L    + I+ EV  SGLRGRGGA F
Sbjct: 101 LKRQERLTFARVGITDPLSLEDYIAHDGYRGLKRALGMTPEAIVAEVTESGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +   C     Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWRTVLG-CQAEQKYIVCNADEGDSGTFSDRMVMEDDPYVLIEGMTIAGLAVGATK 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+      L   +    A+G LG +    G    + +  GAGAYICGEETALL
Sbjct: 220 GYIYLRSEYPHAEAVLLETIARATAAGYLGDDVLGSGKAFHLELRRGAGAYICGEETALL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +G ++Y  +G   + GT
Sbjct: 280 ESIEGKRGTVRPKPPLPAIEGLFGKPTVINNVISLASVPIILDKGGAYYKDYGMGRSLGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++     +E++  IT  EL+ ++ GG   G   + AV  GG     LP  Q  
Sbjct: 340 LPIQLTGNIARGGLIEKAFGITLRELLYEYGGGSASGR-PIRAVQVGGPLGAYLPESQFD 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ LG   ++V D + D+         F   ESCG+CTPCR G+    
Sbjct: 399 -TPLDYEAFAALGAVLGHGGIVVFDDTVDMADMARYAMEFCAVESCGKCTPCRIGSTRGE 457

Query: 360 RVMERLVKGIA---QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            ++ +++   +   Q   I+LL  +   + G ++CALG    +P+   I +F
Sbjct: 458 ELLSQIIVARSEGPQPGRIELLKSLCDTMLGASLCALGGMTPYPVLSAINHF 509


>gi|332529346|ref|ZP_08405307.1| NADH dehydrogenase (quinone) [Hylemonella gracilis ATCC 19624]
 gi|332041144|gb|EGI77509.1| NADH dehydrogenase (quinone) [Hylemonella gracilis ATCC 19624]
          Length = 526

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/415 (35%), Positives = 230/415 (55%), Gaps = 11/415 (2%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q+R+     G+    SL D  +   +  + K LE     ++ +V  SGLRGRGGA F
Sbjct: 101 LKNQERLTFARMGITDPVSLEDYQAHQGYAGLRKALEIKPTDVVQQVLDSGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +D+  Y+V NADE + GT  DR  M  +P+ LIEG  IA+ A GA  
Sbjct: 161 PAGIKWKTVAAAQADQ-KYVVCNADEGDSGTFSDRMTMEGDPYMLIEGMTIAAMATGATR 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+    ++L  A+     +G LG N    G    + V  GAG+Y+CGEETA+L
Sbjct: 220 GYIYVRSEYPHAIDNLNEAIARATKAGFLGDNVLGSGRAFHLEVRKGAGSYVCGEETAML 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV + A VP IL RGA++Y+ +G   ++GT
Sbjct: 280 ESIEGKRGIVRAKPPIPALQGLFGKPTVINNVITYASVPIILARGAAFYANYGMGRSKGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE++  +T  +L+ ++ GG   G   + A+  GG     +P  Q  
Sbjct: 340 LPIQLAGNIKHGGLVEKAFGVTLRQLVFEYGGGTASGRP-VKAIQVGGPLGAYVPE-QHW 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+G   +G+ +G   ++V D ++D+ K       F   ESCG+CTPCR G+   +
Sbjct: 398 DLPMDYEGWTAVGATVGHGGIVVHDDTSDMRKLARYAMEFCAIESCGKCTPCRIGSTRGV 457

Query: 360 RVMERLVKGIAQ------KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++RL +   Q       +++ LL ++   +   ++CA+G    +P+   + ++
Sbjct: 458 EVIDRLAEADRQGKPEVKAQQVKLLRDLCDTMVNGSLCAMGGMTPFPVLSALNHY 512


>gi|239905977|ref|YP_002952716.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
 gi|239795841|dbj|BAH74830.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
          Length = 454

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 143/423 (33%), Positives = 235/423 (55%), Gaps = 14/423 (3%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N +  +  ++ + ++ G ++ +   + ++    ++  V  + LRGRGGAGF  G KW
Sbjct: 9   LFKNRHLGRPATIDEYLAGGGYEALRATIGQRTPAEVLQLVLDADLRGRGGAGFPAGRKW 68

Query: 67  SFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
             +P   +D     Y+V+N DE EPGT KDR ++  +PH +IEG ++ ++A+GA     +
Sbjct: 69  QGIP---ADHVGTRYVVINTDEMEPGTFKDRILVNVDPHLVIEGIILCAYAVGACEGVFF 125

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETALLESL 182
           +R  +  + + ++         G LG N  LG D   D+ VH  AG YICGE +A ++++
Sbjct: 126 IRPSYEGDAKLIEQETQVARERGYLGKNI-LGTDFCFDVHVHRSAGRYICGEASAQIKAI 184

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKL 241
            G +  PR   P  +  GL+ CPT VNN+E++A +P I+R G +W+    R E+  GTKL
Sbjct: 185 SGLRPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGIVRNGPAWFKSLARSESGSGTKL 244

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           +S+SG V  P   E  + +T  ++I  H GG+  G      VIPGG+S P LP   +   
Sbjct: 245 YSVSGQVARPGCYELPIGVTIRDIIFTHAGGMAPG-KTFKTVIPGGASTPYLPEALL-DL 302

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MD+D +++ G   GTA+++V D+ T ++ A   L  F+  ESCG CTPCREG  ++  +
Sbjct: 303 EMDFDPMRKAGQRFGTASLMVFDQDTCLVGATLSLMEFFARESCGWCTPCREGIPYVREL 362

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+  G   +  + +L E+   ++    CA    AA P++GL+ +F   ++  I +  R
Sbjct: 363 LRRIEGGEGTEEHVGMLQEMLPVLD-LAYCAFAPGAAEPLRGLLTHFMDEVQAHITE-KR 420

Query: 422 CNF 424
           C F
Sbjct: 421 CPF 423


>gi|91784827|ref|YP_560033.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia
           xenovorans LB400]
 gi|91688781|gb|ABE31981.1| formate dehydrogenase beta subunit [Burkholderia xenovorans LB400]
          Length = 521

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/411 (37%), Positives = 227/411 (55%), Gaps = 8/411 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + + + L+   D     +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSIDDYIAHGGLEGLRQALQTDGDAACEALIESGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +       Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 158 PAGIKWRTV-RGAKAAQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG---YDVDIIVHHGAGAYICGEETA 177
             IYVR E+     +L+AA+ +  A+G LG +S LG   +  ++ V  GAGAY+CGEETA
Sbjct: 217 GHIYVRSEYPHSIATLEAAIAKARAAGWLG-DSVLGSTEHRFELFVAKGAGAYVCGEETA 275

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGK+G  R KPP PA VGL+G PT +NNV ++A VP I  RGA++Y  FG   +R
Sbjct: 276 LLESLEGKRGIVRAKPPVPALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSR 335

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT  F ++G+V     VE +  +T  EL+ ++ GG   G     AV  GG     LP  Q
Sbjct: 336 GTLPFQLAGNVKQGGLVELAFGVTLRELLYEYGGGTASGRPA-RAVQVGGPLGTYLPESQ 394

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                MDY+    +G+ +G   ++V D ++++ +       F   ESCG+CTPCR G+  
Sbjct: 395 WD-IPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTR 453

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            + V+ R+  G    R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 454 GVEVIGRIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHF 504


>gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
 gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
          Length = 780

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 155/422 (36%), Positives = 245/422 (58%), Gaps = 12/422 (2%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
            L+ Q R+ T  YGL     + + ++RG ++ + K I  K R  II+ +  SGLRGRGG 
Sbjct: 292 FLSGQKRVSTEGYGLMSPLDIDEYIARGGFEALKKAITSKSRQEIIDTILRSGLRGRGGG 351

Query: 59  GFSTGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TG KW  +    SD+P  Y++ N DE +PG   DR ++   P  +IEG +IA +A+G
Sbjct: 352 GFLTGRKWELV--AASDQPEKYVICNGDEGDPGAFMDRILLESYPLRVIEGMIIAGYAVG 409

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGE 174
           A     Y+R E+ +     + A++ C     +G +   S   +++ I    GAGA++CGE
Sbjct: 410 AKEGIFYIRAEYPQAVIRTRKAIELCRERNWVGDHIFGSDFSFEISIF--EGAGAFVCGE 467

Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234
           ETAL+ S+EG++G PR +PP+PA  GL   PT +NNVE+++ V  I+  GA  Y   G E
Sbjct: 468 ETALIASIEGERGFPRQRPPYPAVEGLNKRPTLINNVETLSQVSYIVNHGADEYRKIGTE 527

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
           N++GTK+F+++G V +   +E  M  T +++IE   GG+ GG + L AV  GG S  C+P
Sbjct: 528 NSKGTKVFALAGKVRHGGLIEVPMGTTLNQIIEDIGGGVEGG-EKLRAVQIGGPSGGCIP 586

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
           A  +  A +D+D L +MG+ +G+  ++V+  S  ++        F  +ESCG+CT CR G
Sbjct: 587 A-HLCDAKVDFDALIQMGAIMGSGGMVVLSESNCMVDVARYFLAFTCNESCGKCTFCRVG 645

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
              M+ ++++L  G A+  +ID L E++ +++   +C LG  A  P+   +K FR   EE
Sbjct: 646 IRRMLDILDKLCTGKAEMADIDKLEELALSVKKAALCGLGKTAPNPVLATLKYFREEYEE 705

Query: 415 RI 416
            +
Sbjct: 706 HV 707


>gi|23016780|ref|ZP_00056532.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
           subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 514

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 213/372 (57%), Gaps = 23/372 (6%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  RD ++ E++ +GLRG GGAGF T  KW  +       P  +VVNADE EPGT KDR 
Sbjct: 161 ELPRDEVLAELERAGLRGMGGAGFPTARKWRAV--AARPGPRLVVVNADEGEPGTFKDRW 218

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            ++     ++EG +IA++A+ A   ++Y+R E+    + L   +       L GS     
Sbjct: 219 FLQTNAARVLEGALIAAWAVEADEVYLYLRDEYADLHKLLTVLI-----RALPGS----- 268

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
             V + +  GAGAY+CGEE+AL+ESLEGK+G PR +PP+ A VGL+G PT VNNVE++  
Sbjct: 269 --VPVHLRRGAGAYVCGEESALIESLEGKRGLPRQRPPYVAEVGLFGRPTVVNNVETLYW 326

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V  IL  GA  ++  GR  +RG + +S+SG V  P        IT  ELIE+ CGG+  G
Sbjct: 327 VSRILAEGAELFTDEGRNGHRGLRTYSVSGRVRLPGVKIAPNGITITELIEEFCGGMEDG 386

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A +PGG+S   LPA       + +  ++E G  +G+AAV+V  +  D+      L
Sbjct: 387 -HQLRAYLPGGASGGFLPAHVT--PPLAFGAIEEHGGFIGSAAVVVFSQEDDLRAHALNL 443

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
           + F+ HESCGQCTPCR GT     ++       + + + DLL ++++ +   +IC LG A
Sbjct: 444 ARFFAHESCGQCTPCRVGTAKAADLL------ASPRWDEDLLNDLAQVMRDASICGLGQA 497

Query: 397 AAWPIQGLIKNF 408
           A    Q L+++F
Sbjct: 498 APNVWQSLLRHF 509


>gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
 gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
          Length = 595

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/404 (37%), Positives = 232/404 (57%), Gaps = 5/404 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +++ + ++R  +  ++K L E   + II E+K +GLRGRGGAGF T MKW
Sbjct: 117 VLRNCGFIDPENIDEYIAREGYQGLEKALFEMTGEEIIEELKTAGLRGRGGAGFPTWMKW 176

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           +F  +V +D   Y+V NADE +PG   DR     +PH+++E   I    IGA+  FIY+R
Sbjct: 177 NFSRQVQNDT-KYVVCNADEGDPGAYMDRSTCEGDPHSVLEAMTICGKTIGANQGFIYIR 235

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+      L+ A+ +    GLLG N    G+D DI +  GAGA++CGEETALL+S+EGK
Sbjct: 236 AEYPLAIHRLEIAMKQAREYGLLGKNILGSGFDFDIEIRLGAGAFVCGEETALLQSIEGK 295

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G P+ +PPFPA  GL+G PT +NNVE+ A VP IL +G +W++  G  +++GTK+F+++
Sbjct: 296 RGMPQPRPPFPAVKGLWGKPTVINNVETWANVPVILTKGGNWFNKIGTADSKGTKVFALT 355

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G +     VE  M  T  E+I    GGI        AV  GG S   + A  +   I D+
Sbjct: 356 GKIRNSGLVEVPMGTTLREIIYDIGGGIAHD-KKFKAVQTGGPSGGVITAENLDTPI-DF 413

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
             L  +GS +G+  +IVMD    I+        F   ESCG+C PCR G   +  ++E++
Sbjct: 414 GSLIRIGSMMGSGGMIVMDEDDCIVDVAKFYLNFSVDESCGKCAPCRIGGKSLCNILEKI 473

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             G    +++D L  + + ++  ++CALG     P+   IK+F+
Sbjct: 474 TAGNGTLKDLDTLANIGEAMKKGSLCALGQTTPNPVLSSIKHFK 517


>gi|56751243|ref|YP_171944.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301]
 gi|56686202|dbj|BAD79424.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301]
          Length = 534

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/361 (35%), Positives = 219/361 (60%), Gaps = 13/361 (3%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           + TG+KW+ + K+ SDR  ++V N DE +PG   DR ++  +PH +IEG  IA++A+GA+
Sbjct: 173 YPTGLKWATVAKMPSDR-KFVVCNGDEGDPGAFMDRSVLESDPHQVIEGMAIAAYAVGAN 231

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEET 176
             ++YVR E+      L  A+ +    GLLG+   +S+  +D+++ +  GAGA++CGEET
Sbjct: 232 FGYLYVRAEYPLAIARLNQAIRQARRRGLLGNSVLDSRFSFDLEVRI--GAGAFVCGEET 289

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S++G++G PR++PP+PA  GL+G PT +NNVE+ A +  I+ + A W++  G   +
Sbjct: 290 ALIHSIQGERGVPRVRPPYPAESGLWGHPTLINNVETFANIAPIVEQSADWFAAIGTPTS 349

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F+++G +     +E  M I    +++    G+      + AV  GG S  C+P  
Sbjct: 350 KGTKVFALTGKLRNNGLIEVPMGIPLRSIVD----GMGIPESPVKAVQTGGPSGGCIPLA 405

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGT 355
           Q+   + DYD L ++GS +G+  ++VMD +TD++ AI R  + F + ESCG+C PCR GT
Sbjct: 406 QLDTPV-DYDSLIQLGSMMGSGGMVVMDENTDMV-AIARFYMEFCRSESCGKCIPCRAGT 463

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             +  ++ +L  G     ++  L ++   ++  ++C LG +A  PI   ++ FR   E R
Sbjct: 464 VQLHELLGKLSSGQGTAIDLQQLEDLCYLVKDTSLCGLGMSAPNPILSTLRWFRQEYESR 523

Query: 416 I 416
           +
Sbjct: 524 L 524


>gi|254284253|ref|ZP_04959221.1| Fe-hydrogenase, subunit beta [gamma proteobacterium NOR51-B]
 gi|219680456|gb|EED36805.1| Fe-hydrogenase, subunit beta [gamma proteobacterium NOR51-B]
          Length = 514

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 140/367 (38%), Positives = 205/367 (55%), Gaps = 4/367 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++EVK SGLRGRGGA F  G+KW  +     +R  Y+V NADE + GT  DR +M  +P
Sbjct: 141 IVDEVKESGLRGRGGAAFPAGIKWQTVLDAVGNR-KYIVCNADEGDSGTFADRLLMEADP 199

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161
             LIEG  IA+ A+GA   +IY+R E+    + L  A++    +G LG +    G    +
Sbjct: 200 FQLIEGMTIAALAVGATQGYIYLRSEYPLAHQILNEAIERAEQAGYLGDDLLGSGQAFHL 259

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V  GAGAYICGEET+LL SLEGK+G  R KPP PA  GL+G PT VNNV ++A V T+L
Sbjct: 260 EVRLGAGAYICGEETSLLNSLEGKRGIVRAKPPLPAIEGLFGKPTVVNNVLTLAAVTTVL 319

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            +G+ +Y  FG   +RGT  F ++G++     VE +   T  +L+ +  GG       L 
Sbjct: 320 AKGSDFYQDFGVGRSRGTLAFQLAGNIERGGLVELAFGTTLRDLVSEF-GGDSASGRPLR 378

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A+  GG     LP        +DY+   E+G  +G   V+V D S ++         F  
Sbjct: 379 AIQVGGPLGAYLPESSWD-TPLDYEAFAEIGGMIGHGGVVVFDESINMSDQARFAMDFCA 437

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+CTPCR G    + V++R+ +G   ++  +LL ++   +E  ++CA+G    +P+
Sbjct: 438 EESCGKCTPCRVGAVRGVEVIDRIREGNEPEKNRELLLDLCDTMESASLCAMGGMTPFPV 497

Query: 402 QGLIKNF 408
           +  +  F
Sbjct: 498 RSALHYF 504


>gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 594

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 247/421 (58%), Gaps = 14/421 (3%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGF 60
           + Q+R+   N   +    + + ++R  ++ + K+L     + ++ E+K SGLRGRGG GF
Sbjct: 110 SKQERVALGNCGYIDADKIEEYIARDGYEALGKVLTSMTPEDVVEEMKTSGLRGRGGGGF 169

Query: 61  STGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
            TG+KWSF    C+  P    Y++ NADE +PG   DR I+  +PH++IEG +I ++A+G
Sbjct: 170 PTGLKWSF----CAKSPGPKKYVICNADEGDPGAFMDRSILEGDPHSIIEGMMIGAYAMG 225

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEE 175
           A   +IY R E+    + L+ A+D+    GLLG N  LG D    +H   GAGA++CGEE
Sbjct: 226 ADEGYIYCRAEYPLAIKRLKRAIDQAEEYGLLGENV-LGTDFSFSLHVKEGAGAFVCGEE 284

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A VP+I+RRG +W++  G E 
Sbjct: 285 TALMGSIEGRRGMPRPRPPFPAVSGLWGKPTNINNVETWANVPSIIRRGGAWFASMGTEK 344

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           ++GTK+F+++G V +   VE  M IT  E+I    GGI G      AV  GG S  CL  
Sbjct: 345 SKGTKVFALTGKVKHTGLVEVPMGITLREIIFDIGGGILGD-KKFKAVQIGGPSGGCLTE 403

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +   +  Y+ L + G+ +G+  ++VMD    ++        F + ESCG+C PCREGT
Sbjct: 404 EHLDLPV-SYEDLAKAGAIMGSGGMVVMDEDNCMVDVAKFFLEFTQRESCGKCVPCREGT 462

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             M+ +++++  G     ++  L E++  ++  ++C LG  A  P+   ++ FR   E  
Sbjct: 463 KQMLLLLKKICDGEGTMEDLAQLEELAHMVKDMSLCGLGQTAPNPVLTTLRYFRHEYEAH 522

Query: 416 I 416
           I
Sbjct: 523 I 523


>gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
          Length = 618

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 150/383 (39%), Positives = 217/383 (56%), Gaps = 5/383 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E     II E+K +GLRGRGG GF TG+KW+   K   DR  +++ NADE +PG   D
Sbjct: 169 LFEMEPQQIIQEIKGAGLRGRGGGGFPTGIKWATCAKHDGDR--FVICNADEGDPGAYMD 226

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R ++   PH++IEG +IA+ A+ +H  F+YVR E+    ++L  A+      GLLG N  
Sbjct: 227 RSLLEGNPHSIIEGMLIAAVAMQSHNGFVYVRHEYPLAVKNLNIALKSAREIGLLGKNIL 286

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D DI V  G G+++CGE TAL+ SLEGK G+PR K       G    P+++NNVE+
Sbjct: 287 GSGFDFDIKVSRGGGSFVCGESTALMASLEGKPGRPRAKYVHTVEKGFRESPSSLNNVET 346

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A VP I+  GA WY+  G E ++GTK+FS+ G+V     VE  M      +I    GGI
Sbjct: 347 YANVPHIINNGAEWYASMGTEGSKGTKIFSLVGNVVNTGLVEVPMGTNLRTIIYDIGGGI 406

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                   AV  GG S  C+P  Q     +D+D L ++GS +G+  +IVMD+ T ++   
Sbjct: 407 P-KKKKFKAVQSGGPSGGCIPE-QFLDVPVDFDELVKIGSMMGSGGMIVMDQDTCMVDVA 464

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                F K ESCGQC PCREG   M+ V+ R+  G  ++ +I+LL E+   ++  ++C L
Sbjct: 465 RYFLDFLKEESCGQCNPCREGIKQMLDVLTRICAGEGKEGDIELLEELGAMVQKFSLCGL 524

Query: 394 GDAAAWPIQGLIKNFRPLIEERI 416
           G ++  P+   +  FR   E  I
Sbjct: 525 GTSSPNPVLTTLMYFRHEYEAHI 547


>gi|118581916|ref|YP_903166.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118504626|gb|ABL01109.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
          Length = 488

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 219/384 (57%), Gaps = 4/384 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           RG+      I       +I ++K SGLRGRGG GF TG+KW+F     +D+  Y+V NAD
Sbjct: 29  RGYEALASAITNGTPAGVIEQMKKSGLRGRGGGGFPTGVKWAFAAANQADQ-KYVVCNAD 87

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR ++  +PH+++E   I  +AIGA    +Y+R E+    + L  ++++   
Sbjct: 88  EGDPGAFMDRALLEGDPHSIVEAMAICGYAIGASIGVVYIRAEYPLAIKRLIKSIEDARD 147

Query: 146 SGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
            GLLG N    G++ DI + +GAGA++CGEETAL+ S+EG +G+P  KPPFPA+ G +G 
Sbjct: 148 YGLLGRNILGTGFNFDIELKYGAGAFVCGEETALIRSMEGSRGEPYTKPPFPASAGYWGK 207

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT VNNVE++A +P IL +GA W+S  G EN++GTK+F+++G +     +E  M IT  E
Sbjct: 208 PTIVNNVETLANIPPILVKGADWFSSIGTENSKGTKVFALAGKITNVGLIEVPMGITLGE 267

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           +I +  GG   G     AV  GG S   L +  +   I DYD L   GS +G+  +IVMD
Sbjct: 268 IIFEIGGGCPNG-KQFKAVQTGGPSGGALTSRDIDVPI-DYDNLIARGSMMGSGGMIVMD 325

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
               ++        F   E+CG+CTPCR G+  +  ++ R+ +G     +++ L  +   
Sbjct: 326 EDNCMVDVAKFFLDFTMDETCGKCTPCRIGSKRLHEILCRITQGEGTLEDMENLQCLGAT 385

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           I+   +C  G     P+   I+ F
Sbjct: 386 IKDTALCGFGQTMPNPVLSTIRTF 409


>gi|299531429|ref|ZP_07044837.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni S44]
 gi|298720592|gb|EFI61541.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni S44]
          Length = 721

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 146/414 (35%), Positives = 222/414 (53%), Gaps = 9/414 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G W  +        + I+ +V  SGLRGRGGA F
Sbjct: 295 LARQERLTFARVGIIDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLDSGLRGRGGAAF 354

Query: 61  STGMKWSFMPKVCS---DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
             G+KW  +    S       Y+  NADE + GT  DR +M  +P  LIEG  IA  A+G
Sbjct: 355 PAGIKWKTVAAAESAGTGPQKYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAGLAVG 414

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176
           A   +IYVR E+      L  A+    A+G LG+N +  G    + V  GAG+Y+CGEET
Sbjct: 415 ATQGYIYVRSEYPHAIAVLNEAIARASAAGWLGANVAGSGKAFYLQVRKGAGSYVCGEET 474

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           A+LES+EGK+G  R KPP PA  GL+G PT +NNV ++A VP IL RGA++Y G+G   +
Sbjct: 475 AMLESIEGKRGIVRAKPPLPAIEGLFGKPTVINNVITLATVPIILARGAAFYQGYGMGRS 534

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           RGT  F ++G++     VE++  +T  EL+E   GG   G    +  I  G  +    A 
Sbjct: 535 RGTLPFQLAGNIARGGLVEKAFGLTLRELVEDFGGGTASGRP--IKAIQVGGPLGSYVAP 592

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           +     +DY+     G+ +G   ++V D S D+ +       F   ESCG+CTPCR G+ 
Sbjct: 593 ENWDDPLDYEAYAAKGNVVGHGGLVVHDDSADMAQLARYAMEFCAIESCGKCTPCRIGST 652

Query: 357 WMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             + V++R+ +  G      + LL  +   ++  ++CA+G    +P++  ++++
Sbjct: 653 RGVEVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHY 706


>gi|150388475|ref|YP_001318524.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149948337|gb|ABR46865.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 547

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 145/372 (38%), Positives = 221/372 (59%), Gaps = 8/372 (2%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + +I  +KASGLRGRGG GF TG KW       +D   +++ NADE +PG   DR I+  
Sbjct: 153 EAVIEVIKASGLRGRGGGGFPTGRKWELTHGNKNDL-KFIICNADEGDPGAFMDRSILEG 211

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGY 157
           +PH+++E   IA +AIGA   +IY+R E+    + L  A+++    GLLG    +S   +
Sbjct: 212 DPHSILEAMAIAGYAIGAEKGYIYIRAEYPLAIQRLNIAIEQAREYGLLGERIFDSDFNF 271

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D+++   +GAGA++CGEETALL S+EG +G+P  KPPFPA  GL+  PT VNNVE++A +
Sbjct: 272 DIEL--KYGAGAFVCGEETALLNSIEGGRGEPNAKPPFPAESGLWDKPTCVNNVETLANI 329

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           P IL +G+ W+S  G ++++GTK+F+++G VN    VE  M IT  E+I    GGIR   
Sbjct: 330 PQILLKGSEWFSRIGTKDSKGTKVFALAGKVNNVGLVEVPMGITLREIIFDIGGGIRDN- 388

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               AV  GG S  C+P   +   + DY  L+E+GS +G+  +IVMD    ++       
Sbjct: 389 KKFKAVQTGGPSGGCIPEAYLDTHV-DYQTLQEVGSIMGSGGMIVMDEDDCMVNITKFYL 447

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F + ESCG+CTPCR G   +  ++ R+  G   + ++  L  + + I+  ++C LG ++
Sbjct: 448 EFAEDESCGKCTPCRIGNKRLHEILIRITNGKGTREDLHNLKSLGEIIKDSSLCGLGQSS 507

Query: 398 AWPIQGLIKNFR 409
             PI   ++ F 
Sbjct: 508 PNPILSTLEYFE 519


>gi|114328597|ref|YP_745754.1| NAD-dependent formate dehydrogenase beta subunit (fdsB)
           [Granulibacter bethesdensis CGDNIH1]
 gi|114316771|gb|ABI62831.1| NAD-dependent formate dehydrogenase beta subunit (fdsB)
           [Granulibacter bethesdensis CGDNIH1]
          Length = 518

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 140/392 (35%), Positives = 213/392 (54%), Gaps = 4/392 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +SLSD  + G +  + + L    + ++ +V  SGLRGRGGAGF TG+KW  +    + + 
Sbjct: 116 RSLSDYQAHGGYKGLARALTMTPEAVVEDVTKSGLRGRGGAGFPTGIKWKTVLGAKAAQ- 174

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V NADE + GT  DR IM  +P  LIEG  IA +A+GA   ++Y R E+    +++ 
Sbjct: 175 KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMTIAGYAVGATKGYVYTRSEYPHAIDAMN 234

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+     +G+LG N    G   D+ V  GAGAY+CGEETALL+SLEGK+G  R KPP P
Sbjct: 235 RAIIAAREAGMLGDNILGSGISFDMEVRQGAGAYVCGEETALLDSLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNV S+  VP I+  G   Y+ FG   +RGT    I+G+V      E 
Sbjct: 295 ALSGLFGQPTVINNVISLTSVPWIMTHGGEAYAAFGLGRSRGTMPIQIAGNVKQGGLFEI 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  IT  EL+++  GG   G   + AV  GG      P   +     DY+        +G
Sbjct: 355 AFGITLGELVDEIGGGTLTG-RPVRAVQIGGPLGAYFPRA-LFDTPFDYEAFAAKDGLIG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D + D+         F   ESCG+CTPCR G+   +  +++L++G   ++   
Sbjct: 413 HGGIVIFDDTVDMAHMARFAMEFCAEESCGKCTPCRIGSTRGVETLDKLLRGEQHEKNYA 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +L ++   ++  ++CALG    +P+   + +F
Sbjct: 473 VLEDLCNTMKFGSLCALGGFTPYPVVSAMTHF 504


>gi|260431154|ref|ZP_05785125.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414982|gb|EEX08241.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 567

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 150/377 (39%), Positives = 216/377 (57%), Gaps = 20/377 (5%)

Query: 34  KILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           K L +G DW  +  ++ ASGLRG GGAGF +G KW F+    +D P YL VN DE EPGT
Sbjct: 205 KELREGGDWEAVQEQILASGLRGLGGAGFPSGKKWGFV--RVNDGPRYLAVNGDEGEPGT 262

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR  +   PH  +EG +IA++A+ A   FIY+R E+    E L+  +     +G++  
Sbjct: 263 FKDRYYLERTPHVFLEGMLIAAWAVEAQTCFIYMRDEYPAVLEILRREIAALEQAGIV-- 320

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
             + GY   I +  GAGAYICGEE+A++ES+EGKKG PR +PPF A VG++G PT V+NV
Sbjct: 321 --EKGY---IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPFVAQVGVFGRPTLVHNV 375

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++  V  I R G    S   +   +G + +S+SG V            T  ++IE   G
Sbjct: 376 ETLYWVSRICREGPEILSSVEKNGRKGLRCYSVSGRVAKSGVYLLPAGSTILDVIEA-AG 434

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+  G     A  PGG S   LPA  M    +D+D L+  G+ +G+AAV+V+        
Sbjct: 435 GMALG-HAFKAYQPGGPSSGLLPA-SMDDIPLDFDTLQPHGTFIGSAAVVVLSEQDTARD 492

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           A   +  F++ ESCGQCTPCR G    +++M+      A+K + DLL ++ + +   +IC
Sbjct: 493 AALNMLRFFEDESCGQCTPCRAGCEKAVKLMQ------AEKWDTDLLEDLCQVMGDASIC 546

Query: 392 ALGDAAAWPIQGLIKNF 408
            LG AA  PI+ ++K+F
Sbjct: 547 GLGQAAPNPIRLVMKHF 563


>gi|163760124|ref|ZP_02167207.1| putative nad-dependent formate dehydrogenase beta subunit protein
           [Hoeflea phototrophica DFL-43]
 gi|162282523|gb|EDQ32811.1| putative nad-dependent formate dehydrogenase beta subunit protein
           [Hoeflea phototrophica DFL-43]
          Length = 518

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 146/393 (37%), Positives = 218/393 (55%), Gaps = 8/393 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  ++G    +   +    + I+ +V  SGLRGRGGAGF TG+KW  + +    +  
Sbjct: 117 SLEDYRAQGGLAGLTNAVAMPPEAIVAQVTESGLRGRGGAGFPTGIKWKTVLEADGAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  +IEG VIA  A GA   ++Y+R E+      +  
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVVIEGMVIAGIATGATKGYVYLRSEYPHAINVMNR 235

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           AV+    + +LG++   S  G+D++I V  GAGAY+CGEETALLESLEG++G  R KPP 
Sbjct: 236 AVEIARENNILGTSVLGSPHGFDMEIRV--GAGAYVCGEETALLESLEGRRGVVRAKPPL 293

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ G  G PT VNNV S+A VP I+ +GA +Y  FG   +RGT    I+G+V +    E
Sbjct: 294 PAHKGFLGRPTVVNNVISLASVPIIMDKGADFYRDFGMGRSRGTIPVQIAGNVKHGGLFE 353

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
            +  +T  ELI+   GG   G   + AV  GG      P  ++     DY+        +
Sbjct: 354 AAFGMTLGELIDDIGGGTATGRP-VKAVQVGGPLGAYFPR-ELFDTPFDYEAFAARDGLI 411

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G A ++V D + D++K       F   ESCG+CTPCR G+   + V++ +  GI   +++
Sbjct: 412 GHAGIVVFDDTADMLKQARFAFEFCAVESCGKCTPCRIGSTRGVEVIDNIRDGIEPDKQV 471

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            L+ ++   ++  ++CALG    +P+     +F
Sbjct: 472 ALMSDLCNTMKFGSLCALGGFTPYPVMSAFTHF 504


>gi|330815877|ref|YP_004359582.1| Formate dehydrogenase, beta subunit [Burkholderia gladioli BSR3]
 gi|327368270|gb|AEA59626.1| Formate dehydrogenase, beta subunit [Burkholderia gladioli BSR3]
          Length = 524

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 144/409 (35%), Positives = 221/409 (54%), Gaps = 5/409 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + + + L         E+  SGLRGRGGA F
Sbjct: 102 LKKQQRLTFARIGITDPLSIDDYLAHGGLEGLRRALTLDGAAACEELIESGLRGRGGAAF 161

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 162 PAGIKWRTVRQAQATQ-KYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGVVTGATQ 220

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A++   A+G LG++    G   ++ V  GAGAY+CGEETALL
Sbjct: 221 GHIYVRSEYPHAIAALNQAIERARAAGWLGADVLGSGRAFELFVAKGAGAYVCGEETALL 280

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA +Y  +G   +RGT
Sbjct: 281 ESLEGKRGVVRAKPPLPALQGLHGQPTVINNVITLATAPIIFARGAQFYRDYGMGRSRGT 340

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  EL+ +  GG   G     A + GG     LP  Q  
Sbjct: 341 LPFQLAGNIRQGGLVELAFGVTLRELLFEFGGGTASGRPARAAQV-GGPLGTYLPDSQWD 399

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F  HESCG+CTPCR G+   +
Sbjct: 400 -IPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMQFCVHESCGKCTPCRIGSTRGV 458

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             + R+  G   +R++ LL E+   +   ++CA+G    +P+   + +F
Sbjct: 459 ETIARIRAGDTSERQVHLLRELCDTMMAGSLCAMGGMTPYPVLSALDHF 507


>gi|186475493|ref|YP_001856963.1| NADH dehydrogenase (quinone) [Burkholderia phymatum STM815]
 gi|184191952|gb|ACC69917.1| NADH dehydrogenase (quinone) [Burkholderia phymatum STM815]
          Length = 518

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 217/392 (55%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S  D ++ G    +   L    D  +  +  SGLRGRGGA F  G+KW  +    +D+  
Sbjct: 116 STDDYIANGGIVGLYNALAMTGDAAVEALIESGLRGRGGAAFPAGIKWRTVRAANADQ-K 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P  LIEG +IA    GA    IYVR E+     +L+ 
Sbjct: 175 YIVCNADEGDSGTFSDRLVMESDPFVLIEGMIIAGIVTGATVGHIYVRSEYPHSIATLEE 234

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+ +  A+G LG +S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 235 AIGKARAAGWLG-DSVLGSEHRFELFVAKGAGAYVCGEETALLESLEGKRGIVRAKPPLP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNV ++A VP I  +GA++Y  FG   +RGT  F I+G+V     VE 
Sbjct: 294 ALEGLFGKPTVINNVITLATVPIIFAKGAAFYKDFGMGRSRGTLPFQIAGNVKQGGLVEL 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +   T  EL+  + GG   G     AV  GG     LP  Q     +DY+   ++G+ +G
Sbjct: 354 AFGCTLRELMFDYGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPLDYEEYAKVGAVVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++ +       F   ESCG+CTPCR G+   + V++R+  G    +++ 
Sbjct: 412 HGGLVIHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGVEVIQRIRNGDTSTKQVQ 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 472 LLRDLCDTMVSGSLCAMGGMTPFPVVSALDHF 503


>gi|254468969|ref|ZP_05082375.1| NADP-reducing hydrogenase, subunit c [beta proteobacterium KB13]
 gi|207087779|gb|EDZ65062.1| NADP-reducing hydrogenase, subunit c [beta proteobacterium KB13]
          Length = 517

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/411 (34%), Positives = 220/411 (53%), Gaps = 9/411 (2%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q+R+     G+    SL D +    +  + K +      I+NEVK SGLRGRGGA F
Sbjct: 99  LKNQERLTFARVGITDPLSLKDYIDHEGFVGLKKAINMEAQQIVNEVKDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S +  Y+V NADE + GT  DR  M ++P  LIEG +IA  A+ A  
Sbjct: 159 PTGIKWQTVLDTESTQ-KYIVCNADEGDSGTYSDRMTMENDPFMLIEGMIIAGLAVNADH 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177
            +IY+R E+   ++ L  A+     +  LG N   S   + ++  V   AGAYICGEET+
Sbjct: 218 GYIYLRSEYPHAQDVLNKAIKIATENNYLGQNILNSNKNFTLE--VTRAAGAYICGEETS 275

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGK+G  R KPP PA  GL+G PT VNNV S+A +P I+ +GA +Y+ FG   ++
Sbjct: 276 LLESLEGKRGLVRYKPPLPAIEGLFGKPTVVNNVVSLATIPIIMSKGAKYYADFGVGRSK 335

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT    ++G++     +E++  IT  EL+    GG   G    +  +  G  +    A +
Sbjct: 336 GTLPIQLAGNLKQTGLIEKAFGITLRELLYDFGGGSATGKK--IKAVQVGGPLGAFIAEE 393

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+   ++ + +G   ++  D   ++ +       F   ESCG+CTPCR G+  
Sbjct: 394 NFDIELDYEAYSKLNAVVGHGGIVAFDEDVNMAEMARYSFEFCAIESCGKCTPCRIGSTR 453

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            M V++++V    Q + + LL  +   +   ++CA+G    +P+   +K F
Sbjct: 454 GMEVIDKIVARDEQPKNVALLENLCDTMVNGSLCAMGGMTPFPVMSALKYF 504


>gi|167586515|ref|ZP_02378903.1| NADH dehydrogenase (quinone) [Burkholderia ubonensis Bu]
          Length = 525

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 146/410 (35%), Positives = 223/410 (54%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D +       +   L    D   + +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLRHDGLAGLKNALALDGDAACDALIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +++  Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRHASANQ-KYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IYVR E+     +L+AA+     +G LG+ S LG  +  ++ V  GAG+Y+CGEETAL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIARARDAGWLGA-SVLGSAHAFELHVAKGAGSYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  FG   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE +  +T  EL+    GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPEHQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-VPLDYEAYAAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+ +G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIRRGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|283850902|ref|ZP_06368188.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
 gi|283573825|gb|EFC21799.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
          Length = 454

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 211/376 (56%), Gaps = 9/376 (2%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           LRGRGGAGF  G KW  +P      P Y+VVN DE EPGT KDR ++  +PH +IEG ++
Sbjct: 54  LRGRGGAGFPAGRKWQGIPAGYVG-PRYVVVNTDEMEPGTFKDRVLVNVDPHLVIEGIIL 112

Query: 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGA 169
            ++A+ A     ++R  +  +   L+        +GLLG N  LG D   DI +H  AG 
Sbjct: 113 CAYAVSATLGICFIRPSYEADARLLERETQVARNNGLLGKNI-LGSDFSFDIHIHRSAGR 171

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
           YICGE +A ++++ G +  PR   P  +  GL+ CPT VNN+E++A +P I+  G +W+ 
Sbjct: 172 YICGEASAQIKAISGLRPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGIVANGPAWFK 231

Query: 230 GFGR-ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288
           G    E   GTKLFS+SG V  P   E  +     E+I  H GG+  G   + AVIPGG+
Sbjct: 232 GLAHSETGSGTKLFSVSGRVVRPDCYELPIGTPLREIIFDHAGGMPPG-RVIKAVIPGGA 290

Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348
           S P +P   +    MD++ +++ G  LGTA++IV D++T ++ A   L  F+  ESCG C
Sbjct: 291 SSPFMPEKYL-DLQMDFEPMRKAGQRLGTASIIVFDQNTCLVGATLNLMEFFARESCGWC 349

Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           TPCREG  ++  ++  +  G  ++  ID++ ++ K +     CA    AA P+  L  +F
Sbjct: 350 TPCREGLPYVRDLLRLIEGGEGREEHIDMIKDMGKAMLS-AYCAFAPGAAEPLLSLFTHF 408

Query: 409 RPLIEERIDQYHRCNF 424
              + E + Q  RC F
Sbjct: 409 EAEVREHLRQ-KRCPF 423


>gi|304394104|ref|ZP_07376027.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Ahrensia sp. R2A130]
 gi|303293544|gb|EFL87921.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Ahrensia sp. R2A130]
          Length = 570

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 148/400 (37%), Positives = 222/400 (55%), Gaps = 21/400 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           K L+   + G +   +K+ + G   D +I  +  + LRG GGAGF TG KW F+     +
Sbjct: 181 KDLAAYRAEGGYGQYEKLRDGGTNADAVIETLSDASLRGMGGAGFPTGKKWGFVRGY--E 238

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P  + +NADE EPGT KDR  M   PH + EG +I +  + A   ++Y+R E+    + 
Sbjct: 239 GPRLMTINADEGEPGTFKDRFYMERNPHAMFEGALIGAHCVEAERIYLYMRDEYPAAIKV 298

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           +   + +  A+GL    +  G+   I +  GAGAYICGEE+A+LES+EGK+G PR +PP+
Sbjct: 299 MAECIADIEAAGL----APPGF---IEMRRGAGAYICGEESAMLESIEGKRGLPRHRPPY 351

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A  GL+G PT  NNVE++  VP IL  G  W++  G+ ++ G + +S+SG V  P  V+
Sbjct: 352 IAEAGLFGRPTLNNNVETLYWVPEILANGVEWFTSQGKPDHPGMRSYSVSGRVANPGVVK 411

Query: 256 ESMSITFDELIEKHCGGIR----GGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDG-LK 309
                T +ELIE  CGG+     G      A +PGG+S   LPA   +G + +D+ G L 
Sbjct: 412 APAGSTVNELIEM-CGGMAAKEDGSVQTFKAYLPGGASGGILPAD--KGDVPLDFGGELA 468

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            +G+ +G+ AV+V   +  +  A   L  F+ HESCGQCTPCR GT  M +++     G 
Sbjct: 469 TLGAFVGSHAVVVFSDADSMKDATLNLIDFFTHESCGQCTPCRGGTEKMGKLLRASSNGG 528

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
               E   + ++   +   +IC LG AA  P+  L+ +FR
Sbjct: 529 DALDET-AIRDLEDVMRDASICGLGQAAPNPVNHLLTHFR 567


>gi|167032816|ref|YP_001668047.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1]
 gi|166859304|gb|ABY97711.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1]
          Length = 519

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 150/410 (36%), Positives = 223/410 (54%), Gaps = 7/410 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           T Q  +F      +  SL D  + G +  ++  +      ++  V  SGLRGRGGA F  
Sbjct: 100 TQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGADVVAAVLDSGLRGRGGAAFPA 159

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW  +    + +  ++V NADE + GT  DR +M  +P  LIEG +IA  A+GA   +
Sbjct: 160 GIKWRTVRDAGAGQ-KFVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADKGY 218

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+     SL  A      +G LG++ +  G   D+ V  GAGAYICGEETALLES
Sbjct: 219 IYVRSEYPDAIRSLDQAFTIARDAGYLGTDVAGSGQAFDLEVRVGAGAYICGEETALLES 278

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT  
Sbjct: 279 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTMP 338

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ++G++     VE +  +T  EL++ + GG   G   L A   GG     +P       
Sbjct: 339 FQLAGNIRQGGLVERAFGLTLRELVDGYGGGTASGR-PLKAAQVGGPLGAWVPPSHFD-T 396

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+    MG+ LG   V+V D + ++         F   ESCG+CTPCR G+   M V
Sbjct: 397 PLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGMEV 456

Query: 362 MERLVKG--IAQKREIDLLY-EVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++RL+    +A++ +  LL  ++   ++  ++CA+G   A+P+   +K F
Sbjct: 457 VDRLIASSDLAERHDQALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYF 506


>gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
          Length = 619

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 146/406 (35%), Positives = 232/406 (57%), Gaps = 15/406 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ + ++ G ++ +  +L        I+ +K SGLRGRGG GF T +KW  +     D 
Sbjct: 128 ESIEEYIATGGYEALGTVLTTLTPQQTIDIIKKSGLRGRGGGGFPTYLKWQMV----HDN 183

Query: 77  P---HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           P    Y + N DE +PG   DR ++  +PH ++EG +IA++A GA   + Y+R E+    
Sbjct: 184 PVEEKYFICNGDEGDPGAFMDRSLLEGDPHRVLEGMMIAAYATGAQNGYFYIRAEYPLAI 243

Query: 134 ESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
           + ++ A+++   +GLLG N   S+  ++ +  V  GAGA++CGEETAL++S+EG++G P 
Sbjct: 244 KRIKMAIEKAKETGLLGKNIFGSEFSFEAE--VRTGAGAFVCGEETALIQSIEGQRGNPT 301

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
            KPP+PA  GLY  PT VNNVE++  + TI+ +GA W++  G E ++GTK+F+++G +  
Sbjct: 302 PKPPYPAVQGLYKKPTVVNNVETLGNIATIILKGADWFASMGTETSKGTKVFALTGDIRN 361

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
              VE  M IT  ELI    GG+ G      AV  GG S  CL    +   I DY+ LKE
Sbjct: 362 TGLVEVPMGITLRELIFDVGGGMIGDH-KFKAVQLGGPSGGCLTTQHLDVPI-DYESLKE 419

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            G+ +G+  VIVM+    ++        F   ESCG+C+PC+ G   M+ +++R+  G  
Sbjct: 420 RGAMMGSGGVIVMNEEKCMVNVAKFFMDFCVDESCGKCSPCKIGLKQMLEILKRIDSGYG 479

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ +I+ L  + + I   ++C LG  A  P+   I+ FR   E  I
Sbjct: 480 KEGDIEELQHLGETISKISLCGLGQTAPNPVLSTIRYFRDEYEAHI 525


>gi|307316385|ref|ZP_07595829.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti AK83]
 gi|306898225|gb|EFN28967.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti AK83]
          Length = 518

 Score =  243 bits (619), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 147/392 (37%), Positives = 214/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  +      +++ +      I+ EV  SGLRGRGGAGF TG+KW  + +    R  
Sbjct: 117 SLEDYRAHRGLLGLERAIAMQPAAIVAEVTESGLRGRGGAGFPTGIKWKTVLEARGPR-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A  A   +IY R E+      + A
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATSATKGYIYTRSEYPHAIAVMSA 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A++   A+G+LG+ S LG  +  D+ V  GAGAY+CGEET+LL SLEGK+G  R KPP P
Sbjct: 236 AIEIARAAGVLGA-SVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GL+  PT +NNV S+A VP IL +GA +Y  FG   +RGT    I+G+V +    E 
Sbjct: 295 AHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRGTIPLQIAGNVKHGGLFET 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  E++++  GG       + AV  GG      P   +     DY+        +G
Sbjct: 355 AFGLTLGEIVDEIGGGT-ASARPVKAVQVGGPLGAYFPR-ALFDTPFDYEAFAARDGLIG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
            A  +V D + D++K       F   ESCG+CTPCR G+   + V +R+  GI  ++  +
Sbjct: 413 HAGTVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVEVADRIAAGIEPEKNRE 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   ++  ++CALG    +P+   + +F
Sbjct: 473 LLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 504


>gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain,
           NADH-quinone oxidoreductase chain F related [uncultured
           archaeon]
          Length = 658

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 143/403 (35%), Positives = 236/403 (58%), Gaps = 5/403 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +F+    +   ++ D ++ G +  + K+L +   + ++ E+ ++ LRGRGG GF  G KW
Sbjct: 139 VFSGNLWVDPANIDDYIALGGYQALAKVLHRMTPEEVLEELNSANLRGRGGGGFPAGRKW 198

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               +  + +P Y++VN DE +PG   DR IM   PH ++EG +IA++AIG+   F+YVR
Sbjct: 199 EST-RNAAGKPKYVIVNCDEGDPGAYMDRSIMEGNPHRVLEGLIIAAYAIGSQQGFVYVR 257

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    ++L  A+++    G LG +    G++ D+ VH GAGA++ GE +AL+ ++EGK
Sbjct: 258 QEYPLAVKNLAIALEQAKEYGFLGKDILGSGFEFDVKVHRGAGAFVSGESSALMNAIEGK 317

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PR K    ++ G++  P+ +NNVE+ A VP I+++GA W++  G E ++GTK+FS+ 
Sbjct: 318 VGEPRPKYVHTSDSGIWDKPSNLNNVETYATVPLIIKKGADWFNSIGTEGSKGTKIFSLV 377

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    VE  M  T  ++I K  GG   G      V  GG S   +P   +   + D+
Sbjct: 378 GKVNNTGLVEVPMGTTLRDIIYKI-GGGIRGGKRFKGVQTGGPSGGVIPERYLDSPV-DF 435

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L ++GS +G+  +IVMD  T I+        F  +ESCG+C PCREG   M  +++ +
Sbjct: 436 DALTKLGSMMGSGGMIVMDEDTCIVDIARYFVDFLCNESCGKCVPCREGLKRMREILDDI 495

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           V G  ++ +I+LL E++  ++  ++CALG  AA P+   I+ F
Sbjct: 496 VAGKGREGDIELLKEIADVMKSASLCALGTTAANPVLSTIRYF 538


>gi|187924996|ref|YP_001896638.1| NADH dehydrogenase (quinone) [Burkholderia phytofirmans PsJN]
 gi|187716190|gb|ACD17414.1| NADH dehydrogenase (quinone) [Burkholderia phytofirmans PsJN]
          Length = 520

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 218/392 (55%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L+   D     +  SGLRGRGGA F  G+KW  + +       
Sbjct: 116 SIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAFPAGIKWRTV-RGAKAAQK 174

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA    IYVR E+     +L+A
Sbjct: 175 YIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATVGHIYVRSEYPHSIATLEA 234

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+ +  A+G LG +  LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 235 AIAKARAAGWLG-DRVLGSAHRFELFVAKGAGAYVCGEETALLESLEGKRGIVRAKPPVP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT +NNV ++A VP I  RGA++Y  FG   +RGT  F ++G+V     VE 
Sbjct: 294 ALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGTLPFQLAGNVKQGGLVEL 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+  + GG   G     AV  GG     LP  Q     MDY+    +G+ +G
Sbjct: 354 AFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQWD-IPMDYEAYAAVGAVVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              ++V D ++++ +       F   ESCG+CTPCR G+   + V+ R+  G    R++ 
Sbjct: 412 HGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGVEVIGRIRNGDTSTRQVQ 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 472 LLRDLCDTMVSGSLCAMGGMTPFPVLSALDHF 503


>gi|264679977|ref|YP_003279886.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni CNB-2]
 gi|262210492|gb|ACY34590.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni CNB-2]
          Length = 714

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 145/414 (35%), Positives = 222/414 (53%), Gaps = 9/414 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G W  +        + I+ +V  SGLRGRGGA F
Sbjct: 288 LARQERLTFARVGIIDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLDSGLRGRGGAAF 347

Query: 61  STGMKWSFMPKVCS---DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
             G+KW  +    S       Y+  NADE + GT  DR +M  +P  LIEG  IA  A+G
Sbjct: 348 PAGIKWKTVAAAESAGTGPQKYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAGLAVG 407

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176
           A   +IYVR E+      L  A+    A+G LG+N +  G    + V  GAG+Y+CGEET
Sbjct: 408 ATQGYIYVRSEYPHSIAVLNEAIARASAAGWLGANVAGSGKAFYLQVRKGAGSYVCGEET 467

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           A+LES+EGK+G  R KPP PA  GL+G PT +NNV ++A VP IL RGA++Y G+G   +
Sbjct: 468 AMLESIEGKRGIVRAKPPLPAIEGLFGKPTVINNVITLATVPIILARGAAFYQGYGMGRS 527

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           RGT  F ++G++     VE++  +T  EL++   GG   G    +  I  G  +    A 
Sbjct: 528 RGTLPFQLAGNIARGGLVEKAFGLTLRELVQDFGGGTASG--RPVKAIQVGGPLGSYVAP 585

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           +     +DY+     G+ +G   ++V D S D+ +       F   ESCG+CTPCR G+ 
Sbjct: 586 EDWDDPLDYEAYAAKGNVVGHGGLVVHDDSADMAQLARYAMEFCAIESCGKCTPCRIGST 645

Query: 357 WMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             + V++R+ +  G      + LL  +   ++  ++CA+G    +P++  ++++
Sbjct: 646 RGVEVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHY 699


>gi|225175128|ref|ZP_03729124.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225169304|gb|EEG78102.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 630

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 219/392 (55%), Gaps = 13/392 (3%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---DRPHYLVVNADESEPGTC 92
           L+K    +I EVK++ LRGRGGAGF  G+KW    + CS   D+  Y+V NADE +PG  
Sbjct: 164 LDKSSAAVIEEVKSARLRGRGGAGFPAGVKW----EKCSQQDDKEKYVVCNADEGDPGAF 219

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            DR I+   PH ++EG  I  +A+GA   +IYVR E+ +    L+ A+ +    GLLG N
Sbjct: 220 MDRAILESNPHLVLEGMAICGYAVGASKGYIYVRAEYPKATSRLRIAISQAKEKGLLGKN 279

Query: 153 SKLGYDV--DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
             LG D   DI +  G+GA++CGE TAL+ S+ G  G P  +PP  A  GLYG PT +NN
Sbjct: 280 I-LGSDFSFDIEIFEGSGAFVCGEGTALINSMAGNMGIPETRPPRMAVSGLYGKPTVLNN 338

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270
           V++ A VP I++ GA W+   G E N GT +F++ G +     VE  M  T   LI    
Sbjct: 339 VKTFAYVPGIVKNGAHWFRQKGTEQNPGTAVFALVGKIKNSGLVEVPMGTTLRRLIYDVG 398

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
            GI        AV  GG S  CLP   +   I D+D L + G+ +G+  ++V+D +  ++
Sbjct: 399 EGIPND-KKFKAVQIGGPSGGCLPEDALDIPI-DFDSLHDAGAIMGSGGIVVLDENDCMV 456

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
                   F +HESCG+CT CR GT  M+ ++  + +G     ++DLL E+++++   ++
Sbjct: 457 TVARYFLEFTQHESCGKCTFCRLGTKHMLDILTAITQGKGSLSDLDLLLELAEDVRDGSL 516

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           C LG  A  P+   ++ FR   E  +++  RC
Sbjct: 517 CNLGGTAPNPVLTTLRYFRDEYEAHLEE-GRC 547


>gi|237808265|ref|YP_002892705.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
 gi|237500526|gb|ACQ93119.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
          Length = 570

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 150/414 (36%), Positives = 220/414 (53%), Gaps = 19/414 (4%)

Query: 12  LYGLQGKSLSDSMSRG-HWDN--VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF 68
           + G+ G S + +++   H  N  + K      D +I E+ ASGL GRGGAGF TG KW  
Sbjct: 166 ITGMVGDSFTTTLTYASHHANAGITKAAAMEPDEVIAEISASGLCGRGGAGFPTGTKWKM 225

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
                 D   Y++ NADE EPGT KDR  +      + EG  IA++AI A    +Y+R E
Sbjct: 226 AADANGD-VKYMICNADEGEPGTFKDRITLSWFADLVFEGMTIAAYAIRASQGIVYLRAE 284

Query: 129 FIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           +      L+  +     +GLLG +   K G++ DI +  GAG+Y+CGEETAL+ESLEG +
Sbjct: 285 YAYLLPHLEQVLKARREAGLLGCDISGKEGFNFDIRIQMGAGSYVCGEETALIESLEGNR 344

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR +PP+P   G  G PT VNNVE++A V  IL RGA W+SG G E ++G KLFS+SG
Sbjct: 345 GEPRNRPPYPTEAGFLGQPTVVNNVETLATVSVILARGAQWFSGIGTEKSKGFKLFSVSG 404

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
               P   E     T   L+         G +   AV  GG S   LPA +  G  + Y+
Sbjct: 405 ECARPGLYELPWGSTVSGLLA------LAGGEGAKAVQIGGYSGRFLPAAEF-GRKLAYE 457

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
              ++G+G   ++VI+     D+++       F+  ESCGQCTPCR+G   ++  +  L 
Sbjct: 458 ---DLGAG---SSVIIYGPDRDLLEVAENYLEFFVEESCGQCTPCRDGNVVLLNGIRSLR 511

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            G    +++D L  +++ I   + C LG ++   +  + + FR  I   +   H
Sbjct: 512 NGKCSGQQLDELLSLAETICVASKCGLGQSSPKVLLSINRYFRNEINAHLTAEH 565


>gi|220920302|ref|YP_002495603.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
 gi|219944908|gb|ACL55300.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 519

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 215/393 (54%), Gaps = 8/393 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S++D  + G +  + + LE G    ++ VK SGLRGRGGAGF TG+KW+ +    +D+  
Sbjct: 117 SVADYRAHGGYRGLARALEIGPADTVDAVKVSGLRGRGGAGFPTGIKWNTVMLAEADQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P TLIEG  IA  A+GA   +IY+R E+    + L+ 
Sbjct: 176 YVVCNADEGDSGTFADRMLMEGDPFTLIEGMTIAGVAVGATRGYIYLRSEYPNAYQILKT 235

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G+LG N    G D  + V  GAGAYICGEET+LLESLEGK+G  R KPP PA
Sbjct: 236 AIAAGERAGVLGRNILGSGKDFFLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNV S A VP IL  G   Y+ +G   +RGT    ++G+V Y   +E +
Sbjct: 296 LKGLFGRPTLVNNVLSFAAVPWILEHGGEAYANYGMGRSRGTLPIQLAGNVKYGGLIETA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVI--PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             IT   +IE   GG   G     A +  P G+  P +    +    MDY+        +
Sbjct: 356 FGITLRAVIEDFGGGSLSGRPVRAAQVGGPLGAYFPDV----LFDTPMDYEAFAARKGLV 411

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G   V+V D + D+ +       F   ESCG+CTPCR G       MERL+ G A    +
Sbjct: 412 GHGGVVVFDDTVDMARQARFAFEFCAVESCGKCTPCRIGAVRGRETMERLLAGEAPAEPL 471

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            L+ ++ + +   ++CA+G     P+   I +F
Sbjct: 472 RLIEDLCEVMTDGSLCAMGGLTPVPVMSAITHF 504


>gi|310828875|ref|YP_003961232.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
 gi|308740609|gb|ADO38269.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
          Length = 586

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 159/426 (37%), Positives = 241/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
           M+  Q R+     G+   + + D ++   +   +K I E   + IIN VK +GL GRGGA
Sbjct: 100 MIAKQKRVVLQNCGIIDPERIEDYLAVDGYKAAEKAIKEMSPEDIINTVKVAGLAGRGGA 159

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW+   K   D   YLV NADE +PG   DR ++  +PH LIEG +IA+ AIGA
Sbjct: 160 GFPTWFKWNEAHKAKGDV-KYLVCNADEGDPGAFMDRSVLESDPHALIEGMIIAAKAIGA 218

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
               +YVR E+    + L+ A+ +    G LG N     +  D+ +  GAGA++CGEETA
Sbjct: 219 AQGVVYVRAEYPLAIKRLENAIGQAREKGYLGENIFGSAFSFDLRIKAGAGAFVCGEETA 278

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PRLKPPFPA  G +  PT +NNVE+ A VP I R     Y   G EN++
Sbjct: 279 LIASLEGERGMPRLKPPFPAQKGYWAKPTNINNVETYANVPWIFRNSGETYGQLGNENSK 338

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M +T  ++I    GGI+       AV  GG S  C+PA +
Sbjct: 339 GTKVFALTGKIKKGGLVEIPMGLTLRDVIYDIGGGIKND-KAFKAVQMGGPSGGCVPA-E 396

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   ++DY  + + G+ +G+  ++VMD +T ++        F + ESCG+C  CR GT  
Sbjct: 397 LVDTVIDYPSITKTGAIMGSGGMVVMDETTCMVDMARFFLDFTRKESCGKCNYCRIGTMR 456

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+ +G  +  +I+LL E+   ++  ++C LG  A  P+   ++ FR   E+ I 
Sbjct: 457 MLEILTRITEGEGRDGDIELLEELCLKVKEGSMCGLGQTAPNPVLTTLRYFRNEYEDHIY 516

Query: 418 QYHRCN 423
           + H+C 
Sbjct: 517 K-HKCT 521


>gi|85707197|ref|ZP_01038283.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Roseovarius sp. 217]
 gi|85668251|gb|EAQ23126.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Roseovarius sp. 217]
          Length = 502

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/393 (37%), Positives = 217/393 (55%), Gaps = 10/393 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +++D  + G    + + +E     I+ EV  SGLRGRGGAGF TG+KW  + +  + +  
Sbjct: 105 NITDYEAHGGLVGLRRAIEMDGAGIVAEVTQSGLRGRGGAGFPTGIKWKTVFEAQAPQ-K 163

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P TLIEG  IA   +GA   ++Y+R E+      ++ 
Sbjct: 164 YIVCNADEGDSGTFADRMVMEGDPFTLIEGMTIAGLGVGATRGYVYLRSEYPDAIRVMRR 223

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           AV+   A+G+LG++   S   +D++I V  GAGAY+CGEET+LL SLEGK+G  R KPP 
Sbjct: 224 AVEIARAAGVLGADVLGSGRAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPL 281

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G  G PT VNNV S+A VP I  +GA  Y+ FG   +RGT    I+G+V      E
Sbjct: 282 PALEGFLGRPTVVNNVISLATVPVIFEKGAQHYADFGLGRSRGTVTLQIAGNVARGGLFE 341

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
            +  IT DE++    GG   G   + AV  GG     +P      A + Y+ L   G  L
Sbjct: 342 TAFGITLDEVVNDLGGGTASGRP-VKAVQVGGPLGSYIPVDNFDAA-LGYEELDARGGLL 399

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G A ++V D + D+++       F   ESCG+CTPCR G    +  ++R+  G      I
Sbjct: 400 GHAGLVVFDDAADMLQMARFAMEFCAVESCGKCTPCRIGAVRGVETIDRIAAG--DGSAI 457

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            LL ++ + ++  ++CALG     P+   + +F
Sbjct: 458 PLLTDLCETMKDGSLCALGGFTPLPVMSALTHF 490


>gi|73540324|ref|YP_294844.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
 gi|72117737|gb|AAZ60000.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
          Length = 521

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 220/410 (53%), Gaps = 5/410 (1%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q+R+     G+    SL D  +   +  +++ L      I+ EV  SGLRGRGGA 
Sbjct: 101 FLKRQERLTFARVGITDPLSLDDYRAHEGYAGLERALAMEPAAIVQEVTDSGLRGRGGAA 160

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    S    Y+V NADE + GT  DR +M  +P  LIEG  IA  A+GA 
Sbjct: 161 FPTGIKWKTVLGAKS-AVKYIVCNADEGDSGTFSDRMVMEDDPFVLIEGMTIAGLAVGAE 219

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      L AA+    A+G LG + +  G    + V  GAGAY+CGEETAL
Sbjct: 220 YGYIYCRSEYPHAIAVLNAAIATATAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 279

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL RGA  Y  FG   +RG
Sbjct: 280 LESLEGKRGVVRAKPPLPALEGLFGKPTVINNVISLATVPVILARGAQHYRDFGMGRSRG 339

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE++  +T  EL+  + GG R G   + AV  GG     LP  + 
Sbjct: 340 TLPFQLAGNIKQGGLVEKAFGVTLRELLYDYGGGTRSGR-AVRAVQVGGPLGAYLPEARF 398

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDY+     G  +G   ++V D + D+ +       F   ESCG+CTPCR G+   
Sbjct: 399 D-VPMDYEAYAAFGGVVGHGGIVVFDETVDMARQARYAMEFCAIESCGKCTPCRIGSTRG 457

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + VM+R++ G    + + L+ ++   +   ++CA+G    +P+   +  F
Sbjct: 458 VEVMDRIIAGNEPVKHVKLVRDLCDTMLNGSLCAMGGMTPYPVLSALNEF 507


>gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
 gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
          Length = 635

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 148/384 (38%), Positives = 223/384 (58%), Gaps = 6/384 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G+    D +L    + +I E+K SGLRGRGG GF TG KW    +  +D   Y+V NADE
Sbjct: 177 GYRALADSLLNGTPEAVIEEIKRSGLRGRGGGGFPTGRKWELASRQQADT-KYVVCNADE 235

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            +PG   DR IM  +PH+++E   +  ++IG+    +Y+R E+    + L+ A+ +    
Sbjct: 236 GDPGAFMDRSIMEGDPHSIVEAMALCGYSIGSSKGLVYIRAEYPLAIQRLKTAIAQAREY 295

Query: 147 GLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           GLLG N    G+  DI + +GAGA++CGEETAL+ S+EGK+G+P LKPPFPA  G  G P
Sbjct: 296 GLLGDNIFGTGFCFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGYLGKP 355

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T VNN E++A +P IL RGA W+S  G E ++GTK+F+++G +N    +E  M  T  E+
Sbjct: 356 TNVNNAETLANIPIILTRGAEWFSTIGTEFSKGTKVFALAGKINNVGLIEVPMGTTLREV 415

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           I +  GG   G     AV  GG S  CL    +   I D+D L   GS +G+  +IVMD 
Sbjct: 416 IYEI-GGGIKGGKKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAEGSMMGSGGMIVMDE 473

Query: 326 STDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
             D + ++ R  + F   ESCG+CTPCR G   ++ ++ ++ +G   ++++  L  + + 
Sbjct: 474 D-DCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLEILNKITEGRGSEKDLQTLSTLGQV 532

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           I+   +C LG  +  P+   + NF
Sbjct: 533 IKDTALCGLGQTSPNPVLSTLNNF 556


>gi|221065417|ref|ZP_03541522.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Comamonas testosteroni KF-1]
 gi|220710440|gb|EED65808.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Comamonas testosteroni KF-1]
          Length = 717

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/411 (34%), Positives = 223/411 (54%), Gaps = 7/411 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G W  +        + I+ +V  SGLRGRGGA F
Sbjct: 295 LARQERLTFARVGIVDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLESGLRGRGGAAF 354

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    + +  Y+  NADE + GT  DR +M  +P  LIEG  IA+ A+GA  
Sbjct: 355 PAGIKWKTVAAAPAPQ-KYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAALAVGATQ 413

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+      L  A+    A+G LG+N +  G    + V  GAG+Y+CGEETA+L
Sbjct: 414 GYVYVRSEYPHAIAVLNEAIARASAAGWLGNNVAGSGKAFYLQVRKGAGSYVCGEETAML 473

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV ++A VP IL RGA++Y G+G   +RGT
Sbjct: 474 ESIEGKRGIVRAKPPLPAIEGLFGRPTVINNVITLATVPIILARGAAFYQGYGMGRSRGT 533

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE++  +T  EL++   GG   G    +  I  G  +    A +  
Sbjct: 534 LPFQLAGNIAQGGLVEKAFGLTLRELVQDFGGGTASGRP--VKAIQVGGPLGSYVAPEDW 591

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+     G+ +G   ++V D   D+ +       F   ESCG+CTPCR G+   +
Sbjct: 592 DDPLDYETYAAKGNVVGHGGLVVHDDGADMAQLARYAMEFCAIESCGKCTPCRIGSTRGV 651

Query: 360 RVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++R+ +  G      + LL  +   ++  ++CA+G    +P++  ++++
Sbjct: 652 EVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHY 702


>gi|121609341|ref|YP_997148.1| NADH dehydrogenase (quinone) [Verminephrobacter eiseniae EF01-2]
 gi|121553981|gb|ABM58130.1| NADH dehydrogenase (quinone) [Verminephrobacter eiseniae EF01-2]
          Length = 518

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 143/409 (34%), Positives = 223/409 (54%), Gaps = 5/409 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      SL+D  +   +  + + L      I+ +V  SGLRGRGGA F
Sbjct: 99  LRQQERLTFARMGVTDPLSLADYQAHEGFAGLRRALALSPSEIVQQVLDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    S +  Y+V NADE + GT  DR  M  +P  LIEG  IA+ A GA  
Sbjct: 159 PAGIKWKTVAAASSAQ-KYIVCNADEGDSGTYSDRMAMEGDPFMLIEGMTIAAVATGATQ 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+     +++ A+ +  A+G  GSN  K G    + V   AGAY+CGEETA+L
Sbjct: 218 GYIYIRSEYPHAIATMREAIAKASAAGFSGSNILKSGKTFHLEVRKAAGAYVCGEETAML 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G P+ +NNV + A VP IL RGA++Y+ +G   + GT
Sbjct: 278 ESIEGKRGVVRAKPPIPALKGLFGQPSVINNVITFASVPIILARGAAYYTDYGVGRSSGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   +E++  IT  +L+    GG   G   + AV  GG     +P  +  
Sbjct: 338 LPFQLTGNIKHGGLIEKAFGITLRQLLFDFGGGSASGRP-IKAVQVGGPLGAYVPE-RYW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+    +G  +G   ++V D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPMDYEAYAAVGVTVGHGGIVVHDDTADLSRLARYAMEFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++R+  G    ++++LL ++   +   ++CALG     P+   + ++
Sbjct: 456 EVLDRIAAGNNNAKQVELLRDLCDTMLHGSLCALGSMTPNPVLSALNHY 504


>gi|226939218|ref|YP_002794289.1| NADH dehydrogenase [Laribacter hongkongensis HLHK9]
 gi|226714142|gb|ACO73280.1| NADH dehydrogenase [Laribacter hongkongensis HLHK9]
          Length = 433

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/411 (33%), Positives = 224/411 (54%), Gaps = 7/411 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+     GL +  SLSD ++ G +  + + L  G D  +  ++ SGLRGRGGA 
Sbjct: 17  FLARQQRLVFARAGLTRPLSLSDYLATGGYAGLQRWLSTGADAFLQALETSGLRGRGGAA 76

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +KW  + +  +    ++V NADE + GT  DR ++  +P+ LIEG  +A+  +GA 
Sbjct: 77  FPAHIKWQGVRRAHAVE-KFVVCNADEGDSGTFADRMLLEGDPYALIEGITLAALTVGAR 135

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+R E+ R  E ++ A+ +   +G LG N    G   ++ V  GAGAYICGEE+AL
Sbjct: 136 QGYVYIRSEYPRAIEHMREAIAQARQAGYLGDNILGNGQAFELEVRCGAGAYICGEESAL 195

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LES+EG++G  R +PP P+  GL+G PT V+NV ++A +P I R G   +S +G E +RG
Sbjct: 196 LESIEGRRGMVRPRPPLPSEAGLFGQPTLVHNVMTLAAIPFIAREGGEAFSRYGSERSRG 255

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++     VE +  +   EL+    GG   G       I G       PA   
Sbjct: 256 TLAVQLAGNLRQTGLVETAFGLRLSELLHDFGGGSASGRSIKAVQIGGPLGAWVAPAD-- 313

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGW 357
              ++DY+     G+ +G   V+ +D   D+   + RL++ F   ESCG+CTPCR GT  
Sbjct: 314 FDLLLDYEAFVARGALVGHGGVVAVDDRADLAD-LARLALHFCAEESCGKCTPCRVGTVR 372

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
              +++R+  G+    +++LL E+ + +   ++CALG    +P+   ++ F
Sbjct: 373 AGELVDRIRTGLHPDDDVELLTELCQTMRDASLCALGGMVHFPVLSALRQF 423


>gi|78065617|ref|YP_368386.1| NADH dehydrogenase (quinone) [Burkholderia sp. 383]
 gi|77966362|gb|ABB07742.1| formate dehydrogenase beta subunit [Burkholderia sp. 383]
          Length = 525

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 147/410 (35%), Positives = 221/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D +       +  +L    D +   +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLQYEGLAGLKNVLALDGDAVCEALIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  S    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTV-RQASATQKYIVCNADEGDSGTFSDRLIMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IYVR E+     +L+AA+     +G LG +  LG  +  ++ V  GAG+Y+CGEETAL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHV-LGSAHAFELHVAKGAGSYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GLYG PT +NNV ++A  P I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLYGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE S  +T  EL+    GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNIRHGGLVELSFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDHQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYSMKFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|115350950|ref|YP_772789.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria AMMD]
 gi|115280938|gb|ABI86455.1| formate dehydrogenase beta subunit [Burkholderia ambifaria AMMD]
          Length = 525

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 146/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDVACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  S    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTV-RQASATQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IYVR E+     +L+ A+     +G LG +  LG  +  D+ V  GAG+Y+CGEETAL
Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGEHV-LGSAHAFDLHVAKGAGSYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE +  +T  EL+  + GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPARAAQV-GGPLGTYLPEHQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+ KG   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIRKGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|313499696|gb|ADR61062.1| NADH dehydrogenase (quinone) [Pseudomonas putida BIRD-1]
          Length = 519

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 150/410 (36%), Positives = 221/410 (53%), Gaps = 7/410 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           T Q  +F      +  SL D  + G +  ++  +      ++  V  SGLRGRGGA F  
Sbjct: 100 TQQRLLFARAGITRPLSLDDYRANGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAFPA 159

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW  +    + +  Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA   +
Sbjct: 160 GIKWRTVRDAGAGQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADKGY 218

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+      L  A      +G LG++ +  G   D+ V  GAGAYICGEETALLES
Sbjct: 219 IYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALLES 278

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT  
Sbjct: 279 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTMP 338

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ++G++     VE +  +T  EL+E + GG   G   L A   GG     +P       
Sbjct: 339 FQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGR-PLKAAQVGGPLGAWVPPSHFD-T 396

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+    +G+ LG   V+V D + ++         F   ESCG+CTPCR G+   M V
Sbjct: 397 PLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGMEV 456

Query: 362 MERLVKG--IAQKREIDLLY-EVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++RL+    I ++ +  LL  ++   ++  ++CA+G   A+P+   +K F
Sbjct: 457 VDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYF 506


>gi|170741451|ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195725|gb|ACA17672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium sp. 4-46]
          Length = 572

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 203/370 (54%), Gaps = 21/370 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  +    LRG GGAGF TG KW  +       P  + VN DE EPGT KD+  +  +P
Sbjct: 215 VLKVLDDGSLRGLGGAGFPTGRKWRSV--RGEPGPRLMAVNGDEGEPGTFKDQLYLNTDP 272

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H  +EG +I +  + A   ++Y+R E+   R+ L   + +    G             + 
Sbjct: 273 HRFLEGTLIGAHVVEAEDVYLYIRDEYPIARQILAREIAKLPPGG-----------PRLH 321

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +  GAGAYICGEE++L+ES+EGK+G PR KPP+P  VGL+G PT +NNVE++  +  ++ 
Sbjct: 322 LRRGAGAYICGEESSLIESIEGKRGLPRHKPPYPFQVGLFGRPTLINNVETLYWIRDLIE 381

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
           RG  W+   GR    G + +S+SG V  P        +T  ELIE+ CGG+  G     A
Sbjct: 382 RGPDWWKSHGRNGRTGLRSYSVSGRVREPGVKLAPAGVTIRELIEEFCGGMAEG-HRFAA 440

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
            +PGG+S   LPA  M    +D+  L++ G  +G+AAV+V+    DI  A   L  F++ 
Sbjct: 441 YLPGGASGGILPAA-MDDIPLDFGTLEKYGCFIGSAAVVVLSDKDDIRGAALNLMRFFED 499

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ESCGQCTPCR GT     +ME  V       + DLL E+S+ +   +IC LG AA+ P+ 
Sbjct: 500 ESCGQCTPCRVGTQKARMLMESGVW------DTDLLGELSQCMRDASICGLGQAASNPLT 553

Query: 403 GLIKNFRPLI 412
            +IK F  L 
Sbjct: 554 SVIKYFPDLF 563


>gi|219851497|ref|YP_002465929.1| NADH dehydrogenase (quinone) [Methanosphaerula palustris E1-9c]
 gi|219545756|gb|ACL16206.1| NADH dehydrogenase (quinone) [Methanosphaerula palustris E1-9c]
          Length = 562

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/378 (36%), Positives = 215/378 (56%), Gaps = 5/378 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ V+ SGLRGRGGAGF  G+KW    K  +    Y++ NADE +PG   +R+ M  +P
Sbjct: 188 VIDVVEKSGLRGRGGAGFPAGLKWRITRKETATE-KYIICNADEGDPGAYMNRNEMESDP 246

Query: 103 HTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVD 160
           H LIEG ++ ++AIG      IY+R E+    E L  A+++    GLLG +    G+  D
Sbjct: 247 HMLIEGMILGAYAIGGVKTGVIYIRAEYPLAIERLTKAIEQAREYGLLGDDILGTGFSFD 306

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + +  GAGA++CGE TAL+ S+EG+ G+P  +PP   + GL+G PT +NNVE+   VP I
Sbjct: 307 LHLAIGAGAFVCGESTALVASIEGRTGRPHPRPPRLTDKGLWGKPTDLNNVETWCNVPVI 366

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + RGA WY+  G   N GTK+FS+ G V+    VE  +  T + ++     G  GG   +
Sbjct: 367 VSRGAGWYAAIGAPGNTGTKVFSLVGKVDRVGLVEVPLGTTLERIVIDIGNGGAGG-KAV 425

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AV  GG S  C+P  ++    MDY+ L  +GS +G+  ++VMD  T ++        F 
Sbjct: 426 KAVQTGGPSGGCIPV-RLFDTPMDYESLNRVGSIMGSGGIVVMDEDTGMVDIARYFINFA 484

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCG+C PCREG    + ++ RL+ G    ++++ L  ++  +   ++C LG +A  P
Sbjct: 485 IGESCGKCVPCREGLKHTLLLLNRLLAGKGTGQDLETLALLADTVAKTSLCGLGQSAPNP 544

Query: 401 IQGLIKNFRPLIEERIDQ 418
           +   ++ FR   E  I++
Sbjct: 545 VLTTLEYFRDEYEGLIER 562


>gi|258591614|emb|CBE67915.1| Putative dehydrogenase, similar to gamma (5') and beta (3')
           subunits of formate dehydrogenase and to nuoE and nuoF
           of NADH dehydrogenase (fdhB2/C2) [NC10 bacterium 'Dutch
           sediment']
          Length = 710

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/391 (36%), Positives = 217/391 (55%), Gaps = 15/391 (3%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L+D++ +G +    ++LE+G    +INEVKASGL GRGGA F    KW    +  +  P 
Sbjct: 318 LADALRQGSYATFGRVLEQGDPLAVINEVKASGLTGRGGAYFGAAHKWEAC-RNATGSPK 376

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV+N +E EPG  KDR +M  +PH L+EG ++ +FA GA    +++ GE       ++ 
Sbjct: 377 YLVINGEEGEPGIFKDRHLMEGDPHRLLEGILLTAFACGASRGILFINGEAELSARRMEN 436

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+    A GLLG    +  +   + +  G+G +I GEETAL+E++EGK+  PR KPPFP 
Sbjct: 437 ALRSAEAVGLLGERILESDFSFQLELRRGSGGFILGEETALMEAIEGKRAMPRPKPPFPV 496

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT ++NVE++  VP I+ RGA+W++  G    RGTKLF +SGH+  P  VE  
Sbjct: 497 EAGLWGKPTVIHNVETLTAVPLIVSRGAAWFTALG--GGRGTKLFGLSGHLARPGIVEVP 554

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M IT   LI +  GG + G     A++ G S V       +R +  D   +       G+
Sbjct: 555 MRITLRHLIGEIGGGGKDGQTLKAALVGGPSGV------IVRSSRFDEPLIPGGTISPGS 608

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             V+ +  S  I      L  F   ESCG+CTPCREGTG ++ ++++  +   +++ ++ 
Sbjct: 609 GGVVALGDSVSIDDVTRTLLTFNAQESCGKCTPCREGTGRLLAILQQ-SQHSGRRQALEE 667

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L EV   I   ++C LG +A   +   +  F
Sbjct: 668 LAEV---IRLASLCGLGQSAPLSLLSALDQF 695


>gi|301063630|ref|ZP_07204144.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300442278|gb|EFK06529.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 633

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 151/401 (37%), Positives = 226/401 (56%), Gaps = 6/401 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + + M+RG +      L++     II  +K SGLRGRGG GF TG+KW        +R
Sbjct: 166 EKIEEYMARGGYKAFLSALKRNAPQEIIAAIKESGLRGRGGGGFPTGVKWESCAAHQGER 225

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ NADE +PG   DR I+  +PHT+IEG +IA  AIG+   FIYVR E+    + L
Sbjct: 226 --YIICNADEGDPGAYMDRSILEGDPHTIIEGMLIAGLAIGSREGFIYVRNEYPLAVKRL 283

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             A+ +    GLLG + +   +  ++ +  GAGA++CGE TAL+ SLEG+ G+PR K   
Sbjct: 284 VTAIRQATEYGLLGQHIAGSDFSFEMKISTGAGAFVCGESTALMASLEGEVGRPRAKYVH 343

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
               G    P+ +NNVE+ A VP IL +GA W++  G ++++GTK+FS+ G +     VE
Sbjct: 344 TVEKGFRQGPSNLNNVETYANVPVILAKGARWFANLGTDHSKGTKVFSLVGKIKNTGLVE 403

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  +   +I    GGI  G     AV  GG S  C+P   +   + D++ L ++GS +
Sbjct: 404 VPMGTSLRNIIFDIGGGIP-GKKAFKAVQTGGPSGGCIPEAYLDLGV-DFNELAKVGSIM 461

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IVMD+ T ++        F K ESCGQC PCREG   M+ ++ R+ +G  ++ +I
Sbjct: 462 GSGGMIVMDQDTCMVDVARYFLDFLKEESCGQCNPCREGIKRMLEILTRVCEGDGREGDI 521

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           DLL E+   +   ++C LG +A  P+   IK FR   E  I
Sbjct: 522 DLLQELGDMVRKFSLCGLGTSAPNPVLTTIKYFREEYEAHI 562


>gi|148548760|ref|YP_001268862.1| NADH dehydrogenase (quinone) [Pseudomonas putida F1]
 gi|148512818|gb|ABQ79678.1| NADH dehydrogenase (quinone) [Pseudomonas putida F1]
          Length = 519

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/410 (36%), Positives = 221/410 (53%), Gaps = 7/410 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           T Q  +F      +  SL D  + G +  ++  +      ++  V  SGLRGRGGA F  
Sbjct: 100 TQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAFPA 159

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW  +    + +  Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA   +
Sbjct: 160 GIKWRTVRDAGAGQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADKGY 218

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           +YVR E+      L  A      +G LG++ +  G   D+ V  GAGAYICGEETALLES
Sbjct: 219 VYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALLES 278

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT  
Sbjct: 279 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTMP 338

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ++G++     VE +  +T  EL+E + GG   G   L A   GG     +P       
Sbjct: 339 FQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGR-PLKAAQVGGPLGAWVPPSHFD-T 396

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+    +G+ LG   V+V D + ++         F   ESCG+CTPCR G+   M V
Sbjct: 397 PLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGMEV 456

Query: 362 MERLVKG--IAQKREIDLLY-EVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++RL+    I ++ +  LL  ++   ++  ++CA+G   A+P+   +K F
Sbjct: 457 VDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYF 506


>gi|26988908|ref|NP_744333.1| NADH dehydrogenase (quinone) [Pseudomonas putida KT2440]
 gi|24983719|gb|AAN67797.1|AE016411_2 formate dehydrogenase, beta subunit, putative [Pseudomonas putida
           KT2440]
          Length = 525

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 150/410 (36%), Positives = 221/410 (53%), Gaps = 7/410 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           T Q  +F      +  SL D  + G +  ++  +      ++  V  SGLRGRGGA F  
Sbjct: 106 TQQRLLFARAGITRPLSLDDYRANGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAFPA 165

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW  +    + +  Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA   +
Sbjct: 166 GIKWRTVRDAGAGQ-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADKGY 224

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+      L  A      +G LG++ +  G   D+ V  GAGAYICGEETALLES
Sbjct: 225 IYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALLES 284

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT  
Sbjct: 285 IEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTMP 344

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ++G++     VE +  +T  EL+E + GG   G   L A   GG     +P       
Sbjct: 345 FQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGR-PLKAAQVGGPLGAWVPPSHFD-T 402

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+    +G+ LG   V+V D + ++         F   ESCG+CTPCR G+   M V
Sbjct: 403 PLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGMEV 462

Query: 362 MERLVKG--IAQKREIDLLY-EVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++RL+    I ++ +  LL  ++   ++  ++CA+G   A+P+   +K F
Sbjct: 463 VDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYF 512


>gi|171059432|ref|YP_001791781.1| NADH dehydrogenase (quinone) [Leptothrix cholodnii SP-6]
 gi|170776877|gb|ACB35016.1| NADH dehydrogenase (quinone) [Leptothrix cholodnii SP-6]
          Length = 523

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 144/395 (36%), Positives = 216/395 (54%), Gaps = 8/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL+D  + G W  + + L+   D I   V  SGLRGRGGA F  G+KW  + +  +D+  
Sbjct: 118 SLTDYATHGGWAGLRQALQMPADGIWQTVLDSGLRGRGGAAFPAGIKWRTVAQAQADQ-K 176

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR ++  +P+ LIEG  IA+ A GA   ++YVR E+    +    
Sbjct: 177 YVVCNADEGDSGTFADRMVLEDDPYLLIEGMTIAALACGATRGYVYVRSEYPLAVQVFGE 236

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++    +G LG N    G+  ++ V  GAG+Y+CGEETA+LESLEGK+G  R KPP PA
Sbjct: 237 AIERARTAGYLGDNILGSGHAFELEVRMGAGSYVCGEETAMLESLEGKRGIVRAKPPIPA 296

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT +NNV + A  P IL  GA  Y   GR  + GT  F ++G++     VE +
Sbjct: 297 LSGLFGQPTVINNVLTFAAAPWILSHGAQAYKDHGRGRSTGTLPFQLAGNIARGGLVELA 356

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +T  EL+    GG   G   + AV  GG     LP  Q     +DY+    +G+ +G 
Sbjct: 357 FGVTLRELVFDWGGGSASG-RPVKAVQVGGPLGTYLPESQWD-IPLDYEAYAAVGAVVGH 414

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ----KR 373
             ++V D + D+ K       F   ESCG+CTPCR G+   + V++R+V    Q    ++
Sbjct: 415 GGLVVHDDTADLSKLARYAMAFCAIESCGKCTPCRIGSTRGVEVIDRIVTNHHQPAVREQ 474

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 475 QVKLLRDLCDTMVSGSLCAMGGMTPYPVLSALNHF 509


>gi|170728252|ref|YP_001762278.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169813599|gb|ACA88183.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Shewanella woodyi ATCC 51908]
          Length = 562

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 148/393 (37%), Positives = 218/393 (55%), Gaps = 20/393 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVK--ASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +SL+D ++ G +   +++     D I  E K  ++GLRG GGAGF +G KWSF+      
Sbjct: 184 QSLTDYLAGGGYQFYEQMKASTLDPIEVEDKVFSAGLRGMGGAGFPSGKKWSFV--RAES 241

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P Y+ VN DE EPGT KDR  +  +PH  +EG +IA+ A+ A   ++Y+R E+      
Sbjct: 242 GPRYMAVNGDEGEPGTFKDRYYLETQPHLFMEGMLIAAQAVEAEHIYLYLRDEYPAALTI 301

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L+  + E  ++ ++     +GY   I +  GAGAYICGEE+A++ES+EGK+G PR +PPF
Sbjct: 302 LKREIAELESANIV----PIGY---IELRRGAGAYICGEESAMIESIEGKRGLPRHRPPF 354

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A  G++  PT V+N+E++  V  I R G    +   +    G + +S+SG V  P    
Sbjct: 355 VAQKGIFNQPTLVHNIETLYWVARICREGGEILTSVSKNGRTGLRSYSVSGRVINPGVYL 414

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  +LIE   G I+G    L A  PGG S   LPA  +    +D+D L+  GS +
Sbjct: 415 LPAGSTITDLIEAAGGMIQG--HRLKAYQPGGPSSGILPA-SLADVPLDFDTLQPHGSLI 471

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+AAV+V+     I  A   +  F+ HE+CGQCTPCR G    +++M         K + 
Sbjct: 472 GSAAVLVLSDKDSIRDAALNMMEFFDHENCGQCTPCRVGCEKAVKLMRE------DKWDT 525

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            LL E+S  +E  +IC LG AA  PI+  IK+F
Sbjct: 526 SLLSELSSVMEDASICGLGQAAPNPIRLTIKHF 558


>gi|254482995|ref|ZP_05096230.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [marine
           gamma proteobacterium HTCC2148]
 gi|214036680|gb|EEB77352.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [marine
           gamma proteobacterium HTCC2148]
          Length = 509

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 140/392 (35%), Positives = 217/392 (55%), Gaps = 8/392 (2%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L   +SR  +D ++  L    + I++EV  SGLRGRGGA F  G+KW+ + +   D   Y
Sbjct: 118 LDAYLSRHGFDGLEHALHLPPEDIVDEVTRSGLRGRGGAAFPAGIKWNTVLQAAGDE-KY 176

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +  NADE + GT  DR +M  +P+ LIEG  IA  A+GA   +IY+R E+    E +  A
Sbjct: 177 IACNADEGDSGTFADRLLMESDPYMLIEGMTIAGLAVGAQQGYIYLRSEYPHAWEVMHTA 236

Query: 140 VDECYASGLLGS---NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           + +  A+G LG    +S   + +++ +  GAG+YICGEETA+LESLEG++G  R KPP P
Sbjct: 237 IAKAEAAGYLGEGICDSDRQFHLELRL--GAGSYICGEETAMLESLEGRRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT VNNV ++A +PTI+  GA  Y+  G+  + GT    ++G++     VE 
Sbjct: 295 AIEGLFGKPTVVNNVLTLAAIPTIMAGGAEAYAALGQGRSLGTITLQLAGNIKNGGLVEV 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T   ++++  GG R G   + A+  GG     LP   +    +DY+     G  LG
Sbjct: 355 PYGATLRAVLDQFGGGTRSG-RPIRAIQVGGPLGAYLPE-PLWDTPLDYEAFAAAGGMLG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              V+V D + D+ +       F   ESCG+CTPCR G+     VM+R++   +    + 
Sbjct: 413 HGGVVVFDDTVDMAQQARFAMAFCAEESCGKCTPCRVGSVRGTEVMDRIIARESLDENMA 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++ + +E  ++CA+G     P++  ++ F
Sbjct: 473 LLDDLCETMELGSLCAMGGLTPNPVRSALQYF 504


>gi|255280972|ref|ZP_05345527.1| protein HymB [Bryantella formatexigens DSM 14469]
 gi|255268420|gb|EET61625.1| protein HymB [Bryantella formatexigens DSM 14469]
          Length = 626

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 232/420 (55%), Gaps = 8/420 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            +  Q RI   N      +S  + ++ G +    K L E   D +++ V  SGLRGRGG 
Sbjct: 139 FIAKQTRIVLENCGKFDAESFDEYLAGGGFSAFQKALFEMTPDEVVDVVDKSGLRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  + +  +++  Y+V N DE +PG   D  +M  +P+ LIEG +IA +A+G+
Sbjct: 199 GFPTGRKWKQVARQ-AEKERYVVCNGDEGDPGAFMDGSVMEGDPYKLIEGMMIAGYAVGS 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEET 176
              +IYVR E+      L+ A+ E  A  +LG N  LG D    +H   GAGA++CGE +
Sbjct: 258 ENGYIYVRAEYPMSVARLKHAIAELEARHMLGDNI-LGTDFSFHMHINRGAGAFVCGEGS 316

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL  S+EG +G PR+KPP     GL+  PT +NNVE+ A VP I+  GA WY   G E  
Sbjct: 317 ALTASIEGNRGMPRVKPPRTVEKGLWAKPTVLNNVETYANVPKIVLEGADWYRSIGTEGT 376

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK FS++G +     +E  M  T  ++I    GG++ G     AV  GG S  CL   
Sbjct: 377 PGTKTFSLTGSIQNTGLIEVPMGTTLRQIIFDIGGGMKDGG-TFKAVQIGGPSGGCLTE- 434

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           Q     +D++ +K+ G+ +G+  ++VMD  T +++       F + ESCG+C PCREGT 
Sbjct: 435 QHLDVPLDFESIKKYGAIVGSGGLVVMDDHTCMVEVARFFMSFTQRESCGKCVPCREGTK 494

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++E++V G  +  ++D L E++  ++   +C LG +A  P+   ++ FR   EE I
Sbjct: 495 RMLEILEKIVAGKGELEDLDRLEELAGMVKDMALCGLGKSAPLPVLSTLRTFRKEYEEHI 554


>gi|83643019|ref|YP_431454.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Hahella chejuensis KCTC 2396]
 gi|83631062|gb|ABC27029.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Hahella chejuensis KCTC 2396]
          Length = 611

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 136/374 (36%), Positives = 210/374 (56%), Gaps = 21/374 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I +V+ S LRGRGGAGF TG KW       ++   Y++ NADE EPGT KDR ++  +P
Sbjct: 211 VIAQVEESLLRGRGGAGFPTGRKWRLAANTPAEE-RYVICNADEGEPGTFKDRVLLTEKP 269

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVD 160
             L  G  IA++A+GA    +Y+RGE+   R  L+A +       LLG+    +  +  D
Sbjct: 270 DLLFAGMTIAAYAVGARHGILYLRGEYRYLRAYLEATLQRRREQNLLGAGILGRDDFSFD 329

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +  GAGAYICGEE++L+ S EGK+G+P+ +PPFP   G  G PT VNNVE+++ VP I
Sbjct: 330 IRIQMGAGAYICGEESSLISSCEGKRGEPKNRPPFPVQSGYLGHPTVVNNVETLSCVPRI 389

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + +GA W+ G G   + GTKL S+SG    P   E +  +T  E++ +       G  + 
Sbjct: 390 MEQGAPWFRGMGTTGSSGTKLLSVSGDCVRPGIYEIAFGVTLAEILTQ------AGAQDA 443

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGL--KEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
            A++ GG+S      GQ+ G    +  L  +++ S     A++  + S +I++A      
Sbjct: 444 AAIVVGGAS------GQIVGRTEFHRRLCFEDLASA---GAIVCFNSSRNILEAAAYYMD 494

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+  ESCG CTPCR G  ++ + +E+++ G  +  ++D L  +S  I   + C LG  + 
Sbjct: 495 FFIEESCGYCTPCRVGNVFLKKGLEKIMHGEGEPEDLDYLRSLSDTIIATSRCGLGHTSP 554

Query: 399 WPIQGLIKNFRPLI 412
            PI   ++ F PL+
Sbjct: 555 NPILSTMEYF-PLV 567


>gi|254512174|ref|ZP_05124241.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535885|gb|EEE38873.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 567

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 147/377 (38%), Positives = 216/377 (57%), Gaps = 20/377 (5%)

Query: 34  KILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           K L  G DW  + +++ +SGLRG GGAGF +G KW F+    ++ P YL VN DE EPGT
Sbjct: 205 KELRDGGDWEKVQDDILSSGLRGLGGAGFPSGKKWGFV--RMNEGPRYLAVNGDEGEPGT 262

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR  +   PH  +EG +IA++A+ A   FIY+R E+    E L+  +     +G++  
Sbjct: 263 FKDRYYLERTPHVFLEGMLIAAWAVEAETCFIYMRDEYPAVLEILRREIAALEEAGIV-- 320

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
             + GY   I +  GAGAYICGEE+A++ES+EGKKG PR +PPF A VG++  PT V+NV
Sbjct: 321 --EKGY---IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPFVAQVGIFNRPTLVHNV 375

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++  V  I R G    +   +   +G + +S+SG V  P         T  ++IE   G
Sbjct: 376 ETLYWVSKICREGPECLNSTEKNGRKGLRSYSVSGRVAKPGVYLLPAGSTILDVIEA-AG 434

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+  G     A  PGG S   LPA  +    +D+D L+ +G+ +G+AAV+V+        
Sbjct: 435 GMAEG-HQFKAYQPGGPSSGLLPA-SIDDVPLDFDTLQPLGTFIGSAAVVVLSDQDTARD 492

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           A   +  F++ ESCGQCTPCR G    +++M+      A K + DLL ++ + +   +IC
Sbjct: 493 AALNMLRFFEDESCGQCTPCRAGCEKAVKLMQ------ADKWDQDLLEDLCQVMGDASIC 546

Query: 392 ALGDAAAWPIQGLIKNF 408
            LG AA  PI+ +IK+F
Sbjct: 547 GLGQAAPNPIRLVIKHF 563


>gi|83309268|ref|YP_419532.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82944109|dbj|BAE48973.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 467

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 146/372 (39%), Positives = 210/372 (56%), Gaps = 23/372 (6%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  RD  + E++ +GLRG GGAGF T  KW  +       P  +VVNADE EPGT KDR 
Sbjct: 114 ELPRDEALTELERAGLRGMGGAGFPTARKWRSV--AAQPGPRLVVVNADEGEPGTFKDRW 171

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            + +    ++EG +IA++A+ A   ++Y+R E+    + L   + +            L 
Sbjct: 172 FLENHAAQVLEGALIAAWAVEADEVYLYLRDEYADLHKGLATLIRD------------LP 219

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D+ I +  GAGAY+CGEE+AL+ESLEGK+G PR +PP+ A VGL+G PT VNNVE++  
Sbjct: 220 GDITIHLRRGAGAYVCGEESALIESLEGKRGLPRQRPPYVAEVGLFGRPTLVNNVETLYW 279

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V  +L  GA  +   GR  + G + +S+SG V  P        IT  ELI++ CGG+  G
Sbjct: 280 VSRLLAEGAELFGNEGRNGHHGLRTYSVSGRVKEPGVKIAPNGITVSELIDEFCGGMEDG 339

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L A +PGG+S   LPA       + +  ++E G  +G+AAV+V  ++ D+      L
Sbjct: 340 -HVLAAYLPGGASGGFLPARLQ--PPLAFGAIEEHGGFIGSAAVVVFSQADDLRAVALNL 396

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
           + F+ HESCGQCTPCR GT   +     L+ G A  R  DLL +++  +   +IC LG A
Sbjct: 397 ARFFAHESCGQCTPCRVGTAKSV----GLLAGPAWDR--DLLDDLAGVMRDASICGLGQA 450

Query: 397 AAWPIQGLIKNF 408
           A    Q L ++F
Sbjct: 451 APNVWQSLFRHF 462


>gi|218532745|ref|YP_002423561.1| NADH dehydrogenase (quinone) [Methylobacterium chloromethanicum
           CM4]
 gi|218525048|gb|ACK85633.1| NADH dehydrogenase (quinone) [Methylobacterium chloromethanicum
           CM4]
          Length = 519

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 143/391 (36%), Positives = 214/391 (54%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D  + G +  ++  L+ G + I+ +V+ SGLRGRGGAGF  G+KW+ +    SD+  
Sbjct: 117 SVEDYRAHGGYRGLEAALKLGAEGIVAQVRDSGLRGRGGAGFPAGIKWNTVMLAQSDQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA   +IY R E+ +  ++L+ 
Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGATRGYIYCRSEYPQSFKTLRD 235

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G+LG N    G    + V  GAGAYICGEET+LLESLEGK+G  R KPP PA
Sbjct: 236 AIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G  G PT VNNV +   VP IL+ GA  Y+ +G   + GT    ++G++     +E +
Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPYILQHGAKSYAEYGMGRSLGTLPIQLAGNIRQGGLIEYA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  ++IE   GG   G   + AV  GG      P   +    +DY+ +      +G 
Sbjct: 356 FGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFP-DDLLDTPLDYEAMAAKKGLVGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ K       F   ESCG+CTPCR G    +  M++++ GI  +  + L
Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++ + +   ++CA+G     P+   I NF
Sbjct: 474 VEDLCEIMTDGSLCAMGGLTPMPVMSAITNF 504


>gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 614

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 147/367 (40%), Positives = 210/367 (57%), Gaps = 4/367 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ + ASGLRGRGG GF TG KW F     S+   +++ NADE +PG   DR ++  +P
Sbjct: 173 VIDLITASGLRGRGGGGFPTGRKWQFAADQKSEE-KFIICNADEGDPGAFMDRAVLEGDP 231

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           HT++E   I  +AIGAH   IY+R E+      L+ A+ +    GLLG N    G+D  I
Sbjct: 232 HTVLEAMAIGGYAIGAHTGVIYIRAEYPLAVRRLEIAIRQAEELGLLGRNIFDSGFDFRI 291

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            + +GAGA++CGEETAL+ S+EGK+G+P +KPPFPA  GL+  PT VNNVE+ A V  I+
Sbjct: 292 EIKYGAGAFVCGEETALIHSIEGKRGEPTVKPPFPAVEGLWKKPTVVNNVETYACVGAIV 351

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R+GA W+   G   + GTK+F+++G V     VE  M  T  +++    GGI+ G     
Sbjct: 352 RKGAEWFRSLGTAGSPGTKVFALAGKVAKVGLVEVPMGTTLRDIVFGIGGGIKNG-RAFK 410

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S  C+    +   I DY+ LK +GS +G+  +IVMD    ++        F  
Sbjct: 411 AVQTGGPSGGCITPANLDLPI-DYEALKSIGSMMGSGGMIVMDEDDCMVNIAKFFLEFTL 469

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+CTPCR G   M  ++  + +G A    ID L  +S  I+   +C LG  +  P+
Sbjct: 470 DESCGKCTPCRIGNRRMYEMLNEITEGRASLDVIDRLKTLSATIKDTALCGLGQTSPNPV 529

Query: 402 QGLIKNF 408
              + NF
Sbjct: 530 LSTLANF 536


>gi|94272888|ref|ZP_01292199.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
 gi|93449984|gb|EAT01388.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
          Length = 530

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 132/345 (38%), Positives = 207/345 (60%), Gaps = 5/345 (1%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNA 84
           G+   +D I  +    II+E+  SGLRGRGG G+  G+KW+ + K         Y++ NA
Sbjct: 168 GYQALLDCIWHRQPAAIIDEISKSGLRGRGGGGYPAGLKWATVAKAALPPGGRKYVICNA 227

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DE +PG   DR ++   PH ++EG  IA++A+GA   ++YVR E+      L+ A+ +  
Sbjct: 228 DEGDPGAFMDRSVLESAPHRVLEGMAIAAYAVGADFGYLYVRAEYPLAVARLKKAISQAE 287

Query: 145 ASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
             GLLG       +D  + +  GAGA++CGEETAL+ S+EGK+GQPR +PP+PA  G+ G
Sbjct: 288 KLGLLGQRIGGSAFDFRVEIRLGAGAFVCGEETALVASIEGKRGQPRPRPPYPAEYGIKG 347

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
           CPT +NNVE++A +  I+ RG +W++  G E ++GTK+F+++G V     +E  M IT  
Sbjct: 348 CPTLINNVETLANITAIINRGGAWFATLGSEQSKGTKVFALAGKVVNTGLIEVPMGITLH 407

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E++E+  GG   G  ++ AV  GG S  C+PA   +  + DY+ L+  GS +G+  +I+M
Sbjct: 408 EIVEEMGGGTPAG-GSIKAVQTGGPSGGCIPAAHFQLPV-DYESLQAEGSIMGSGGLIIM 465

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
           D  + ++        F   ESCG+C PCR GT  ++ ++E++  G
Sbjct: 466 DEGSGMVDVARFFMEFCVDESCGKCVPCRVGTKQILLLLEKIGAG 510


>gi|160897303|ref|YP_001562885.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Delftia acidovorans SPH-1]
 gi|160362887|gb|ABX34500.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Delftia
           acidovorans SPH-1]
          Length = 727

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/416 (34%), Positives = 226/416 (54%), Gaps = 12/416 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   +L+D  + G W  +++        I+ EV  SGLRGRGGA F
Sbjct: 300 LARQERLTFARVGVIDPLNLADYAAHGGWQGLERAARMEPAAIVQEVLDSGLRGRGGAAF 359

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +      +  Y+  NADE + GT  DR +M  +P+TLIEG  IA  A+GA  
Sbjct: 360 PAGIKWKTVAAAAGPQ-KYIACNADEGDSGTFADRLLMEGDPYTLIEGMAIAGLAVGATQ 418

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             +YVR E+     +L+ A+    A+G LG + +  G    + V  GAG+Y+CGEETA+L
Sbjct: 419 GLVYVRSEYPHAVATLREAIARAEAAGWLGRDVAGSGRAFHMEVRKGAGSYVCGEETAML 478

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EG++G  R KPP PA  GL+G PT +NNV ++A VP IL RGA++Y GFG   +RGT
Sbjct: 479 ESIEGRRGIVRAKPPLPAIEGLWGRPTVINNVITLATVPMILARGAAFYQGFGMGRSRGT 538

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE++  ++  EL+E   GG   G       + G       PA    
Sbjct: 539 LPFQLAGNIARGGLVEKAFGLSLRELVEDFGGGTATGRTVKAVQVGGPLGSYVAPADW-- 596

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A +DY+     G+ +G   ++V D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 597 DAPLDYEAYAAKGNVVGHGGIVVHDDTADMAQLARYAMEFCAIESCGKCTPCRIGSTRGV 656

Query: 360 RVMERLVKGIAQKR-------EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++R+V+  A          ++ LL  +   ++  ++CA+G    +P++  + ++
Sbjct: 657 EVIDRIVRAGADPAAHAGHAGQVALLESLCDTMQHGSMCAMGGMTPYPVRSALNHY 712


>gi|119897703|ref|YP_932916.1| hydrogen dehydrogenase subunit alpha [Azoarcus sp. BH72]
 gi|119670116|emb|CAL94029.1| probable hydrogen dehydrogenase, alpha subunit [Azoarcus sp. BH72]
          Length = 602

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 146/383 (38%), Positives = 212/383 (55%), Gaps = 22/383 (5%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVV-NADESEPGTCKDR 95
           GR   ++E++ S LRGRGGAGF+T +KW+     C D   P  +VV NADE EPGT KDR
Sbjct: 197 GRSGWLDEMQRSNLRGRGGAGFTTAVKWT----ACRDAAGPQKVVVCNADEGEPGTFKDR 252

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--S 153
            ++      + EG  +A++A GA    +Y+RGE+    ++L A + +  A+GLLG N   
Sbjct: 253 LLLTRMADAVFEGMTLAAWATGAQLGLLYLRGEYRYLLDALNATLTQRRAAGLLGRNILG 312

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
           + G+D DI +H GAGAYICGEETALLESLEGK+G PR++PPFP   G  G PT VNNVE+
Sbjct: 313 EAGFDFDIAIHLGAGAYICGEETALLESLEGKRGTPRIRPPFPVTHGYLGRPTVVNNVET 372

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           +A    I   G + ++  G   + GTKL SISG    P   E    +T + ++E  CG  
Sbjct: 373 LAKTCLIACGGGAAFAATGTAQSTGTKLLSISGDCAAPGIYEYPFGVTVERVLED-CGA- 430

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                +  AV  GG++   L A + +  I  ++ +   G      A +V D   D+ +  
Sbjct: 431 ----SDTQAVQVGGAAGITLAAYEFQRRIA-FEDVPTAG------AFMVFDSGRDLFEVA 479

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                F+ HESCG CTPCR GTG +   M++   G   + ++  +  + + ++  + C L
Sbjct: 480 RNFVAFFAHESCGFCTPCRVGTGLLKAAMDKFASGHGSRGDLADIEWIDRLLKNASHCGL 539

Query: 394 GDAAAWPIQGLIKNFRPLIEERI 416
           G +A  P+   +  FR   E R+
Sbjct: 540 GASAPNPVLDTLLKFRSFYERRM 562


>gi|307942954|ref|ZP_07658299.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp.
           TrichSKD4]
 gi|307773750|gb|EFO32966.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp.
           TrichSKD4]
          Length = 537

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 132/351 (37%), Positives = 202/351 (57%), Gaps = 21/351 (5%)

Query: 60  FSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           F TG KW    K+ +D P   YL +N DE EPGT KDR  +  +PH L+EG +IA+ A+G
Sbjct: 200 FPTGTKW----KIVNDLPGPKYLTINGDEGEPGTFKDRFHLERDPHRLLEGALIAAHAVG 255

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETA 177
               ++Y+R E+    E L+  +     +G++        ++D  +  GAGAYICGEE+A
Sbjct: 256 VERIYLYMRDEYPAVLEILRREISALRDAGII-------TNIDFELRRGAGAYICGEESA 308

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           ++ES+EGK+G PR +PPF A VGL+G PT  +NVE++  +  IL +GA W++  GR  ++
Sbjct: 309 MIESIEGKRGLPRHRPPFIAQVGLFGRPTLNHNVETLFWIRDILEKGADWFANQGRRGHK 368

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G + FS+SG V  P        +T +EL+ + CGG+  G  N    +PGG+S   LPA  
Sbjct: 369 GFRSFSVSGRVKEPGVKLAPAGVTMNELLTEFCGGMEEGH-NFKGYLPGGASGGILPA-S 426

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+  L + G  +G+ A++V     D+      L  F+KHESCGQCTPCR GT  
Sbjct: 427 LADEPLDFGTLDKHGCFIGSHAIVVFSDKDDMRDVALNLMQFFKHESCGQCTPCRSGTEK 486

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           M+ +++      A+  ++D +      +   +IC LG AA+ P+  ++K F
Sbjct: 487 MVSLLKDPNWDKAKIADLDAV------MRSASICGLGQAASNPVASVLKFF 531


>gi|170698430|ref|ZP_02889503.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria IOP40-10]
 gi|170136683|gb|EDT04938.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria IOP40-10]
          Length = 525

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 143/409 (34%), Positives = 217/409 (53%), Gaps = 5/409 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  S    Y+V NADE + GT  DR IM  +P+ LIEG +IA    GA  
Sbjct: 159 PAGIKWRTV-RQASATQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGITTGATL 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+ A+     +G LG      G+  D+ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGERVLGSGHAFDLHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+  + GG   G     A + GG     LP  Q  
Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPARAAQV-GGPLGTYLPEHQWD 396

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 397 -VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             + R+ +G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 456 ETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|254563762|ref|YP_003070857.1| NAD-dependent formate dehydrogenase, Molybdenum containing subunit
           beta [Methylobacterium extorquens DM4]
 gi|254271040|emb|CAX27047.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta
           subunit [Methylobacterium extorquens DM4]
          Length = 519

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 142/391 (36%), Positives = 214/391 (54%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D  + G +  ++  L+   + I+ +V+ SGLRGRGGAGF  G+KW+ +    SD+  
Sbjct: 117 SVEDYRAHGGYRGLEAALKLDAEGIVAQVRDSGLRGRGGAGFQAGIKWNTVMLAQSDQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA+  +IY R E+ +  ++L+ 
Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGANRGYIYCRSEYPQSFKTLRD 235

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G+LG N    G    + V  GAGAYICGEET+LLESLEGK+G  R KPP PA
Sbjct: 236 AIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G  G PT VNNV +   VP IL  GA  Y+ +G   + GT    ++G++     +E +
Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLGTLPIQLAGNIKQGGLIEYA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  ++IE   GG   G   + AV  GG      P  ++    +DY+ +      +G 
Sbjct: 356 FGITIRQVIEDFGGGTMSGRP-VRAVQVGGPLGAYFP-DELLDTPLDYEAMAAKKGLVGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ K       F   ESCG+CTPCR G    +  M++++ GI  +  + L
Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++ + +   ++CA+G     P+   I NF
Sbjct: 474 VADLCEIMTDGSLCAMGGLTPMPVMSAITNF 504


>gi|39933810|ref|NP_946086.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris CGA009]
 gi|39647657|emb|CAE26177.1| NAD-dependent formate dehydrogenase beta subunit [Rhodopseudomonas
           palustris CGA009]
          Length = 518

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 215/392 (54%), Gaps = 4/392 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +S+ D  + G +  +++ L+   D II++V  SGLRGRGGAGF TG KW  + +    + 
Sbjct: 115 RSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGFPTGTKWRTVAQAGRGQ- 173

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+  NADE + GT  DR +M  +P  +IEG  IA  A+GA   +IY+R E+    E++ 
Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATKGYIYIRSEYPHAVEAMN 233

Query: 138 AAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           AA++    +G LG +     D  DI V  GAGAYICGEET++LESLEGK+G  R KPP P
Sbjct: 234 AAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GL+G PT +NNV + + VP IL  GA  Y+  G   +RGTK   + G++ +    E 
Sbjct: 294 AHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGTKPIQLGGNIKHGGLFEV 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  IT  EL+++  GG   G   + AV  GG      P   +     DY+        +G
Sbjct: 354 AFGITLGELVDEIGGGTLSGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGMVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              V+V D + D+ K       F  HESCG+CTPCR G+      +++++ G      I 
Sbjct: 412 HGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGAETVDKIIAGDRPAANIA 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +L ++   ++  ++CALG  A  P+   + +F
Sbjct: 472 VLEDLCNTMKFGSLCALGGLAPIPVLSALTHF 503


>gi|172059963|ref|YP_001807615.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MC40-6]
 gi|171992480|gb|ACB63399.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MC40-6]
          Length = 525

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  S    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTV-RQASATQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IYVR E+     +L+ A+     +G LG +  LG  +  D+ V  GAG+Y+CGEETAL
Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGEHV-LGSAHAFDLHVAKGAGSYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE +  +T  EL+  + GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPARAAQV-GGPLGTYLPEHQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+ +G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|302336898|ref|YP_003802104.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
 gi|301634083|gb|ADK79510.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
          Length = 632

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 208/363 (57%), Gaps = 8/363 (2%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW+   +  +D+  YL+ N DE +PG   DR I+   PH+++EG +IA+ AIGA 
Sbjct: 198 FPSGKKWALTLRQQADK-KYLICNGDEGDPGAFMDRSILEGNPHSVVEGMMIAARAIGAE 256

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             ++YVR E+    E ++ A+D     GLLG +    G   DI V  GAGA++CGE +A+
Sbjct: 257 AGYVYVRAEYPLAVERIRKAIDAARELGLLGEDLFGTGACFDIKVMEGAGAFVCGEASAM 316

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+ G +G PR KPP  A  GL+  PT VNNVE++A VP +LR+G+  Y   G   + G
Sbjct: 317 VASIMGGRGMPRPKPPRTAEKGLWDKPTVVNNVETLATVPLVLRKGSKGYRTVGTSGSPG 376

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI---RGGWDN--LLAVIPGGSSVPCL 293
           TK F+++GHV     +E     T  E+I +  GG+   +G  DN    AV  GG S  CL
Sbjct: 377 TKTFALTGHVANTGLIEVPFGTTLREIIFEIGGGVLDEKGNVDNDAFKAVQIGGPSGGCL 436

Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353
               +    +D+D L  +G+ +G+  ++VM+RST +++       F + ESCG+C PCRE
Sbjct: 437 TREHLD-IPLDFDSLGGIGAMVGSGGLVVMNRSTCMVQVARFFMQFTQAESCGKCVPCRE 495

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           GT  M+ +++ +++G A +  I LL  + + +   ++C LG AA  P+   ++ FR   E
Sbjct: 496 GTRQMLDLLDDIIEGRADESTIPLLESLCRTVARGSLCGLGKAAPSPVLSTLRYFRQEYE 555

Query: 414 ERI 416
             +
Sbjct: 556 SHV 558


>gi|124515811|gb|EAY57320.1| NADH dehydrogenase (quinone) [Leptospirillum rubarum]
          Length = 617

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 150/423 (35%), Positives = 233/423 (55%), Gaps = 9/423 (2%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62
           Q +I T   G+    S+ D ++   +  + K L     + ++ +V  SGLRGRGG GF T
Sbjct: 135 QVKIVTKRCGMIDPLSIEDYIAMDGYKALKKALTSMTPEEVVEQVTKSGLRGRGGGGFPT 194

Query: 63  GMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHC 120
           G+KWS   K  S  P  Y+V NADE +PG   DR ++  +PH ++EG +IAS+A+G A  
Sbjct: 195 GLKWSLTQK--SPGPEKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMIIASYAVGGAKK 252

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY R E+      L+ A+++  A   LG N    G   DI +  GAGAY+CGEETALL
Sbjct: 253 GYIYCRAEYPLAIRHLRKAIEDAKAHNFLGENILGTGLCFDIEIKEGAGAYVCGEETALL 312

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+ G++G P  KPPFPA  G++G P+ +NNVE++  +  I+  G  WY+ +G E  +GT
Sbjct: 313 ASIMGERGMPWPKPPFPAQKGVWGKPSVINNVETLGNIGHIILNGGDWYASYGSEKTKGT 372

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K F+++G +     +E        E+I    GG+        A   GG S  C+P   + 
Sbjct: 373 KTFALTGSIKNSGLIEVPAGTPLREIIYSIGGGMVEKKIPFKAAQLGGPSGGCIPVDGLD 432

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             + D++ +   G+ +G+  ++VMD +  I+        F + ESCG+CTPCR G+  M+
Sbjct: 433 TPV-DFENVVAAGAIMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSKIML 491

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ R+ +G  Q+ ++D L  +S  ++  ++C LG AA  P+   I+ FR   E  I + 
Sbjct: 492 DILTRITEGKGQEGDLDELVRLSMYVKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI-RD 550

Query: 420 HRC 422
            RC
Sbjct: 551 KRC 553


>gi|107022110|ref|YP_620437.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia AU 1054]
 gi|116689055|ref|YP_834678.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia HI2424]
 gi|105892299|gb|ABF75464.1| formate dehydrogenase beta subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647144|gb|ABK07785.1| formate dehydrogenase beta subunit [Burkholderia cenocepacia
           HI2424]
          Length = 525

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 221/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D +  G    +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQARAAQ-KYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IYVR E+     +L+AA+     +G LG +  LG  +  ++ V  GAG+Y+CGEETAL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHV-LGSAHAFELHVAKGAGSYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ Y   VE +  +T  EL+    GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDHQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIRHGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|331696855|ref|YP_004333094.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
 gi|326951544|gb|AEA25241.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
          Length = 499

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 144/368 (39%), Positives = 210/368 (57%), Gaps = 6/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  V  SGLRGRGGAGF TG+KW  + +  S    ++  NADE + GT  DR ++  +P
Sbjct: 131 VVTAVTDSGLRGRGGAGFPTGVKWKTVAQ-ASSAVKFVCCNADEGDSGTFADRMLLEGDP 189

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDI 161
            TL+ G  IA +A+GA   ++YVR E+     +++ A+      G LG S    G+  D+
Sbjct: 190 FTLLCGMTIAGYAVGASEGYVYVRSEYPDAVAAVRTAIVAARERGWLGDSVLGSGFAFDV 249

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V  GAGAYICGEET++LESLEGK+G  R KPP PA  GL+G PT VNNV S+A VPTIL
Sbjct: 250 HVRVGAGAYICGEETSMLESLEGKRGTVRPKPPIPALEGLFGRPTVVNNVLSLASVPTIL 309

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             G   Y+  G   +RGT++F + G+V     VE +  I+  EL+E   GG   G   + 
Sbjct: 310 ADGPQAYAALGVGRSRGTQVFQLGGNVARGGVVETAFGISLGELVETFGGGTLSGR-PVR 368

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FY 340
           AV  GG     LP  Q     MDY+     G+ +G   V+V D + D + A+ R ++ F 
Sbjct: 369 AVQVGGPLGAYLPVEQFD-LPMDYEAFAASGAMVGHGGVVVFDDTVD-MSAMARFAMEFC 426

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             ESCG+CTPCR G    +  ++R+  G  ++  + LL ++ + +   ++CA+G     P
Sbjct: 427 AEESCGRCTPCRIGAVRGVETIDRIRAGEDREANLVLLEDLCELMTDGSLCAMGGLTPLP 486

Query: 401 IQGLIKNF 408
           ++  I++F
Sbjct: 487 VRSAIRHF 494


>gi|262275748|ref|ZP_06053557.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP
           101886]
 gi|262219556|gb|EEY70872.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP
           101886]
          Length = 609

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 206/382 (53%), Gaps = 19/382 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+    S LRGRGGAGFS G+KW        D   Y++ NADE EPGT KDR I+   P
Sbjct: 208 VIDATSTSKLRGRGGAGFSAGLKWRLCHDAAGDT-KYVICNADEGEPGTFKDRVILTESP 266

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS----NSKLGYD 158
             +  G +IA +AIGA    +Y+R E+    + L+  ++      LLG+    N K  +D
Sbjct: 267 EQVFAGMIIAGYAIGAREGILYLRYEYRYLVDYLEKTLNSLRERNLLGAKIGGNDKFSFD 326

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           + I    GAGAYICG+E+AL+ES EGK+G PR+KPPFP + G  GCPT VNNVE++A V 
Sbjct: 327 IRI--QLGAGAYICGDESALIESCEGKRGTPRVKPPFPVHQGFMGCPTAVNNVETLANVA 384

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I  +GA WY   G   + GT+L S+SG V  P   E    I+  +++E     + G  +
Sbjct: 385 RIFEKGARWYESMGTAESAGTRLISVSGDVEKPGIYEIEWGISLKDVLE-----LVGARN 439

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
             +A I G S   C+ A +    +  Y  L   GS      ++V     ++++ + R   
Sbjct: 440 PRVAQISGPSG-ECVSAAKDGNRVFSYKDLSCNGS------LMVFSYERNLLEIVRRFIH 492

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+  ESCG CTPCR G   +   +  +++G A ++++D + E +  I G + C LG  + 
Sbjct: 493 FFMEESCGICTPCRAGNVELYNKVSLIIEGRAVEQDLDEIVEWANIIRGSSRCGLGTTSP 552

Query: 399 WPIQGLIKNFRPLIEERIDQYH 420
            PI   ++ F    ++++   H
Sbjct: 553 KPIITSMQAFPEEYKQKLVTQH 574


>gi|192289232|ref|YP_001989837.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1]
 gi|192282981|gb|ACE99361.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1]
          Length = 518

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 215/392 (54%), Gaps = 4/392 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +S+ D  + G +  +++ L+   D II++V  SGLRGRGGAGF TG KW  + +    + 
Sbjct: 115 RSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGFPTGTKWRTVAQAGRGQ- 173

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+  NADE + GT  DR +M  +P  +IEG  IA  A+GA   +IY+R E+    E++ 
Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATRGYIYIRSEYPHAVEAMN 233

Query: 138 AAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           AA++    +G LG +     D  DI V  GAGAYICGEET++LESLEGK+G  R KPP P
Sbjct: 234 AAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GL+G PT +NNV + + VP IL  GA  Y+  G   +RGTK   + G++ +    E 
Sbjct: 294 AHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGTKPIQLGGNIKHGGLFEV 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  IT  EL+++  GG   G   + AV  GG      P   +     DY+        +G
Sbjct: 354 AFGITLGELVDEIGGGTLSGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGMVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              V+V D + D+ K       F  HESCG+CTPCR G+      +++++ G      I 
Sbjct: 412 HGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGAETVDKIIAGDRPAANIA 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +L ++   ++  ++CALG  A  P+   + +F
Sbjct: 472 VLEDLCNTMKFGSLCALGGLAPIPVLSALTHF 503


>gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
 gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
          Length = 594

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 159/424 (37%), Positives = 245/424 (57%), Gaps = 14/424 (3%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFST 62
           + R   N   +  +++ D +    +  ++K+L+    RD +I E+ ASGLRGRGG GF T
Sbjct: 114 ERRALKNCGVIDPENIDDFLKNDGYKGIEKVLKTMSNRD-VIKEIFASGLRGRGGGGFLT 172

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW     + +++  Y+V NADE +PG   DR I+  +PH++IEG +IA +AIGA    
Sbjct: 173 GIKWEIASNIEAEQ-KYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKGL 231

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLE 180
           +Y+R E+      L  A++     G LG N  LG  ++ DI +  GAGA++CGEETAL+ 
Sbjct: 232 VYIRAEYPLAIHRLSVAIESARKKGFLGKNI-LGSDFEFDIELKFGAGAFVCGEETALIH 290

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G+P  KPP+PA  G +  PT VNNVE++  VP IL  G  W+   G E + GTK
Sbjct: 291 SMEGRRGEPTSKPPYPAEKGFWNKPTVVNNVETLVNVPGILLHGKEWFREVGTEKSPGTK 350

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +N    VE  M IT  E+I +  GGI+       AV  GG S  CL    +  
Sbjct: 351 VFALAGKINNVGLVEVPMGITLREIIFEIGGGIKDN-KKFKAVQTGGPSGGCLTEKDLDT 409

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMM 359
            I D+D L + GS +G+  ++VMD   D + AI +  + F   ESCG+CTPCR G   + 
Sbjct: 410 PI-DFDTLSKKGSIMGSGGMVVMDED-DCMVAIAKFFLEFTLDESCGKCTPCRVGNTRLY 467

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF-RPLIEERIDQ 418
            +++++ +G     ++ LL E+S+ I+  ++C LG  +A P+   +  F    +E  +D+
Sbjct: 468 EMLDKITQGRGTLEDLQLLQELSEGIKATSLCGLGQTSANPVLSTLAQFYDEYVEHVVDK 527

Query: 419 YHRC 422
             RC
Sbjct: 528 --RC 529


>gi|163853801|ref|YP_001641844.1| NADH dehydrogenase (quinone) [Methylobacterium extorquens PA1]
 gi|163665406|gb|ABY32773.1| NADH dehydrogenase (quinone) [Methylobacterium extorquens PA1]
          Length = 519

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 143/391 (36%), Positives = 213/391 (54%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D  + G +  ++  L+ G + I+ +V+ SGLRGRGGAGF  G+KW+ +    SD+  
Sbjct: 117 SVEDYRAHGGYRGLEVALKLGAEGIVAQVRDSGLRGRGGAGFPAGIKWNTVMLAQSDQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA   +IY R E+ +  ++L+ 
Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGATRGYIYCRSEYPQSFKTLRD 235

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G+LG N    G    + V  GAGAYICGEET+LLESLEGK+G  R KPP PA
Sbjct: 236 AIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G  G PT VNNV +   VP IL  GA  Y+ +G   + GT    ++G++     +E +
Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLGTLPIQLAGNIRQGGLIEYA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  ++IE   GG   G   + AV  GG      P   +    +DY+ +      +G 
Sbjct: 356 FGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFP-DDLLDTPLDYEAMAAKKGLVGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ K       F   ESCG+CTPCR G    +  M++++ GI  +  + L
Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++ + +   ++CA+G     P+   I NF
Sbjct: 474 VEDLCEIMTDGSLCAMGGLTPMPVMSAITNF 504


>gi|171316163|ref|ZP_02905387.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MEX-5]
 gi|171098672|gb|EDT43467.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MEX-5]
          Length = 525

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 219/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  S    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTV-RQASATQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IYVR E+     +L+ A+     +G LG    LG  +  D+ V  GAG+Y+CGEETAL
Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGERV-LGSAHAFDLHVAKGAGSYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE +  +T  EL+  + GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPARAAQV-GGPLGTYLPEHQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+ +G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|255659120|ref|ZP_05404529.1| protein HymB [Mitsuokella multacida DSM 20544]
 gi|260848565|gb|EEX68572.1| protein HymB [Mitsuokella multacida DSM 20544]
          Length = 416

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 133/396 (33%), Positives = 224/396 (56%), Gaps = 4/396 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+   M+ G ++ + K +    + I + + A  ++GRGGA +  G KWS    V  +R  
Sbjct: 18  SIGSYMNVGGFEALRKAVTMDPEEITDLLTAVKIKGRGGAEYPLGRKWSQARAVRGER-K 76

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            ++ NADE E  T KDR+++ H+P  LIE  +IA++ +GA   FIY+R E+   R  L  
Sbjct: 77  VVICNADEGETTTFKDRELICHDPFNLIEAMIIAAYVVGASDGFIYMRAEYACFRPLLLN 136

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ +    G LG+N    G+D DI ++ GAGAY+CGE TAL+ S+EGK G+PR+KPPF  
Sbjct: 137 AIRQAKNYGFLGTNILGRGFDFDIHLYSGAGAYVCGEGTALIRSIEGKAGRPRMKPPFIK 196

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G++  PT +NNVE++++VP +L      Y+  G   + GTKL S++G+VN+P   E  
Sbjct: 197 VSGVFARPTCLNNVETLSLVPHLLLDEEGVYASCGSGESIGTKLVSVAGNVNHPGVFEIP 256

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E++ +  GGI+   D  + +I  G +   +    +      Y+ L+  G  +G+
Sbjct: 257 FGTTVREILYELAGGIQ--HDRKIRLIQFGGASGKIADDSILDTPYTYEDLRAAGVMVGS 314

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D  T ++  +     F+  ESCGQCTPCREG   +  +++++  G A + +I +
Sbjct: 315 GGMLVIDERTSVLDFLRMNQEFFWEESCGQCTPCREGNLHIKIILDKMATGTATREDIAI 374

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           + ++++ +   ++C LG+ A   +   +K F  L +
Sbjct: 375 MMKIARVMSMSSLCGLGETAQNSLLSAMKVFPDLFD 410


>gi|119504734|ref|ZP_01626812.1| NADH dehydrogenase (quinone) [marine gamma proteobacterium
           HTCC2080]
 gi|119459339|gb|EAW40436.1| NADH dehydrogenase (quinone) [marine gamma proteobacterium
           HTCC2080]
          Length = 526

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 149/399 (37%), Positives = 217/399 (54%), Gaps = 15/399 (3%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK---------- 71
           D +S G    + + LE     ++  V  SGLRGRGGAGF TG+KW  + +          
Sbjct: 110 DYVSHGGMAGLQRALEMSPMSVVQAVTESGLRGRGGAGFPTGIKWQTVAEQAPVPHKGDP 169

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
           V + R  Y+ VNADE + GT  DR +M  +P  L+EG  IA+ A+GA    IY+R E+  
Sbjct: 170 VDAPRHKYICVNADEGDSGTFADRMLMEGDPFCLLEGMAIAAHAVGADRGMIYLRSEYPA 229

Query: 132 ERESLQAAVDECYASGLLGSNSKLGY--DVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
               +  A+++  A G LG  S LG   + D+ +  GAG+Y+CGEETA+LESLEG++G  
Sbjct: 230 AIAVMSDAIEKARARGWLG-ESILGSSCNFDVTIRVGAGSYVCGEETAMLESLEGRRGTV 288

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R KPP PA  GL+G PT +NNV +IA VP+IL RG   Y+  G+E +RGT++F ++G++ 
Sbjct: 289 RAKPPLPAIEGLFGTPTVINNVLTIASVPSILARGPEAYAELGQERSRGTQVFQLAGNIA 348

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
               VE +  I+  ELI     G + G   L AV  GG     L A  ++   M Y+ L 
Sbjct: 349 RGGIVEVAFGISAHELIFGLGQGTKSG-KPLKAVQVGGPLGAYLTADALQ-VPMAYESLA 406

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
             G+ LG   ++V D S D+ +       F   ESCG+CTPCR G    + V++ L+   
Sbjct: 407 AEGAMLGHGGLVVFDDSVDMAEQARFAMEFCVEESCGKCTPCRIGAVRGVEVIDDLLASD 466

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           A +    LL ++   +   ++CA+G     P+   +  F
Sbjct: 467 APENAEQLLRDLCDVMTQGSLCAMGGLTPQPVLSALDQF 505


>gi|126728990|ref|ZP_01744805.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37]
 gi|126710920|gb|EBA09971.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37]
          Length = 561

 Score =  239 bits (610), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 220/393 (55%), Gaps = 21/393 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           ++LS  +  G +  +  +  +G DW  +  ++ ASGLRG GGAGF +G KW F+    + 
Sbjct: 184 ETLSAYLEEGGYSELKALRAEG-DWEEVQEKILASGLRGLGGAGFPSGRKWGFV--RANP 240

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YL VN DE EPGT KDR  +  EPH  +EG +IA++A+ A   FIY+R E+    + 
Sbjct: 241 GPRYLAVNGDEGEPGTFKDRVYIEGEPHVFLEGVLIAAWAVEAERCFIYMRDEYPGIIDI 300

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L+  +     +G++  +        I +  GAGAYICGEE+A++ES+EGK+G PR +PP+
Sbjct: 301 LRKEIRALEEAGIVEKDY-------IDLRRGAGAYICGEESAMIESIEGKRGIPRHRPPY 353

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A VG++  PT V+NVE++  V  I R G    S   +   +G + +S+SG V  P    
Sbjct: 354 VAQVGIFDRPTLVHNVETLYWVSKICREGPQILSSVEKNGRKGLRSYSVSGRVKSPGVHL 413

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  ++I K  GG+  G   L A  PGG S   LPA  M    +D+D L+  GS +
Sbjct: 414 LPAGSTIMDII-KAAGGMLDG-HRLKAYQPGGPSSGLLPA-SMNDIPLDFDTLQPHGSFI 470

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+AAV+V+     +  A   +  F++ ESCGQCTPCR G    +++M      +A K + 
Sbjct: 471 GSAAVVVLSDQDSVRDAALNMLQFFEDESCGQCTPCRVGCEKAVKLM------MADKWDQ 524

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            LL E+ + +   +IC LG AA  PI+  IK+F
Sbjct: 525 SLLEELCQTMTDASICGLGQAAPNPIRLTIKHF 557


>gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 596

 Score =  239 bits (609), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 147/385 (38%), Positives = 228/385 (59%), Gaps = 4/385 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E   + +I+ +K SGLRGRGG GF +G+KW F  K   D   Y+  NADE +PG   D
Sbjct: 147 LTEMKPEEVIDIIKRSGLRGRGGGGFPSGLKWEFTAKAEGDE-KYVACNADEGDPGAFMD 205

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R ++  +PH +IE   IA++A GA+  ++Y+R E+    E L+ A+ +   +GLLG N  
Sbjct: 206 RSVLEGDPHVIIEAMAIAAYAAGANRGYVYIRAEYPIAVERLEIAIKQARENGLLGKNIF 265

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              +D ++ +  GAGA++CGEETAL+ S+EGK+G PR +PPFPA+ G++  PT +NNVE+
Sbjct: 266 GTEFDFELEIRLGAGAFVCGEETALINSIEGKRGMPRPRPPFPAHKGIWNKPTLLNNVET 325

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A VP I+  GA W++  G E ++GTK+F++ G +N    +E +M  T  E+I    GGI
Sbjct: 326 YANVPQIILNGAEWFASMGTEKSKGTKVFALGGKINNTGLLEVAMGTTLREVIYDVGGGI 385

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
             G     AV  GG S  C+ A  +   I DYD L  +GS +G+  +IVMD    ++   
Sbjct: 386 PNG-KAFKAVQTGGPSGGCITAEHLDTPI-DYDNLIALGSMMGSGGMIVMDEDNCMVDIA 443

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                F   ESCG+C PCR GT  M+ +++++ +G  +  ++D L  ++++I+  ++C L
Sbjct: 444 RFFLDFTVEESCGKCPPCRIGTKRMLELLDKITEGKGELEDLDKLERLAESIKVASLCGL 503

Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQ 418
           G  A  P+   +K FR   E  + +
Sbjct: 504 GQTAPNPVLSTLKYFRDEYEAHVKE 528


>gi|255263458|ref|ZP_05342800.1| tungsten-containing formate dehydrogenase beta subunit
           [Thalassiobium sp. R2A62]
 gi|255105793|gb|EET48467.1| tungsten-containing formate dehydrogenase beta subunit
           [Thalassiobium sp. R2A62]
          Length = 561

 Score =  239 bits (609), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 149/392 (38%), Positives = 218/392 (55%), Gaps = 31/392 (7%)

Query: 19  SLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +L D  + G+W++V DKIL            ASGLRG GGAGF +G KW F+    +  P
Sbjct: 197 ALKDLRADGNWEDVQDKIL------------ASGLRGLGGAGFPSGKKWGFV--RANAGP 242

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E+      L 
Sbjct: 243 RYLAVNGDEGEPGTFKDRYYLERVPHQFLEGMLIAAWAVEAETCFIYMRDEYPAVLHILA 302

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
             +    A+G++    + GY   I +  GAGAYICGEE+A++ES+EGK+G PR +PPF A
Sbjct: 303 EEIKALEAAGIV----EEGY---IDLRRGAGAYICGEESAMIESIEGKRGMPRHRPPFVA 355

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VG++G PT V+N+E++  V  I R G    S       +G + +S+SG +  P      
Sbjct: 356 QVGVFGQPTLVHNIETLHWVSRICREGPEILSSVEHNGRKGLRSYSVSGRIAKPGVFLLP 415

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE   GG+  G     A  PGG S   LPA  +    +D+D L+ +G+ +G+
Sbjct: 416 AGSTITEIIEA-AGGMAEG-HVFKAYQPGGPSSGLLPA-SINDVPLDFDTLQPLGTFIGS 472

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AAV+V+        A   +  F++ ESCGQCTPCR G    +++M+      A   + +L
Sbjct: 473 AAVVVLSDQDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------ADAWDQEL 526

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           L ++S  +   +IC LG AA  PI+ ++ +F+
Sbjct: 527 LTDLSTAMVDASICGLGQAAPNPIKMVMTHFK 558


>gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
          Length = 624

 Score =  238 bits (608), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 152/417 (36%), Positives = 233/417 (55%), Gaps = 5/417 (1%)

Query: 5   QDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI     G +  +S+ + M+ G +  + K L     + +I EV+ SGLRGRGG GF  
Sbjct: 140 QTRIVLEQCGNIDAESVEEYMAAGGFSALKKALFAMTPEAVIAEVEFSGLRGRGGGGFPA 199

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW  +     +   Y+V N DE +PG   D  +M  +P  LIEG ++A +A+GA   F
Sbjct: 200 GRKWRQVAAHKEEPLKYIVCNGDEGDPGAFMDGSVMEGDPCRLIEGMMLAGYAVGASEGF 259

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+      L+ A+ +    GLLG S    G+   + ++ GAGA++CGE +AL  S
Sbjct: 260 IYVRAEYPLSVARLRQAIGQMEERGLLGDSILGTGFSFHLHINRGAGAFVCGEGSALTAS 319

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG +G PR+KPP   + GL+G PT +NNVE+ A +P I+  G  W+   G EN+ GTK 
Sbjct: 320 IEGHRGMPRVKPPRTVDQGLWGKPTVLNNVETYANLPGIIVNGGKWFRTIGTENSTGTKT 379

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS++G +     VE  M  T   +I   CGG++ G +   AV  GG S  CL    +   
Sbjct: 380 FSVTGCIENTGLVEVPMGTTLRTIIYDICGGLKEGSE-FKAVQIGGPSGGCLTEEHLDEP 438

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+D +++    +G+  ++VMD+ T +++       F + ESCG+C PCREGT  M+ +
Sbjct: 439 -LDFDSVQKFNVIIGSGGLVVMDKHTCMVEVARFFMNFTQRESCGKCVPCREGTKRMLEI 497

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +ER+V+G  +  +I+ L +++  I    +C LG +A  P+   IK FR    E I++
Sbjct: 498 LERIVEGKGEPDDIERLEQLADMISNTALCGLGKSAPLPVISTIKAFRKEYLEHINE 554


>gi|53803150|ref|YP_115124.1| NAD-reducing hydrogenase subunit alpha [Methylococcus capsulatus
           str. Bath]
 gi|53756911|gb|AAU91202.1| NAD-reducing hydrogenase, alpha subunit [Methylococcus capsulatus
           str. Bath]
          Length = 610

 Score =  238 bits (608), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 140/401 (34%), Positives = 213/401 (53%), Gaps = 27/401 (6%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM---PKVCSDRP--------- 77
           + +++ L   R+ +  E++ S LRGRGGAGF+T  KW F    P+  +  P         
Sbjct: 189 EALERTLALDRETMFGEIETSQLRGRGGAGFNTAWKWRFCYEGPETAAVCPPGQPAAGIE 248

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V NADE EPGT KDR +++     + EG  + ++ +GA   F+Y+RGE++   + L+
Sbjct: 249 RYVVCNADEGEPGTFKDRVLLQSCADQVFEGMTVCAYLVGAKQGFLYLRGEYLYLHDQLE 308

Query: 138 AAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A +      GLLG +   + G+D DI +  GAGAYICGEE+AL+ESLEG +G PR +PP+
Sbjct: 309 AVLAARRRHGLLGKSILGREGFDFDIEIRLGAGAYICGEESALIESLEGNRGVPRNRPPY 368

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P   G  G PT VNNVE+      I   G  W++  G E ++GTKL SI G    P   E
Sbjct: 369 PVTHGYLGKPTVVNNVETFFAAAAIAVHGGEWFAEVGTEKSKGTKLLSICGDCARPGIYE 428

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               +T  +++E  CG       ++L V  GG S   L   +    +  Y+ L   GS  
Sbjct: 429 YPFGVTIRQVLED-CGAA-----DVLGVQIGGPSGTFLSDKECDRKLA-YEDLATGGS-- 479

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
                IV DR+ D+I      + F+ HESCG CTPCR GT  +  +++++ +G     ++
Sbjct: 480 ----FIVFDRTRDVIGIARNFTHFFAHESCGFCTPCRVGTALLKNLLDKIAEGHGATGDL 535

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             L  + + +   + C LG  AA PI   ++ +  + + R+
Sbjct: 536 AELSRLGRFVRSASHCGLGQTAANPILSTLERYPEIYQARL 576


>gi|316932167|ref|YP_004107149.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1]
 gi|315599881|gb|ADU42416.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1]
          Length = 518

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 213/392 (54%), Gaps = 4/392 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +S+ D  + G +  +++ L+   D II++V  SGLRGRGGAGF TG KW  + +    + 
Sbjct: 115 RSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGFPTGTKWRTVAQAGRGQ- 173

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+  NADE + GT  DR +M  +P  +IEG  IA  A+GA   +IY+R E+    E++ 
Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATRGYIYIRSEYPHAVEAMN 233

Query: 138 AAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++    +G LG +     D  DI V  GAGAYICGEET++LESLEGK+G  R KPP P
Sbjct: 234 VAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GL+G PT +NNV + + VP IL  GA  Y+  G   +RGTK   + G++ +    E 
Sbjct: 294 AHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGTKPIQLGGNIKHGGLFEV 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  IT  ELI+   GG   G   + AV  GG      P   +     DY+        +G
Sbjct: 354 AFGITLGELIDDIGGGTASGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGMVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              V+V D + D+ K       F  HESCG+CTPCR G+      +++++ G      I 
Sbjct: 412 HGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGAETVDKIIAGDKPAANIA 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +L ++   ++  ++CALG  A  P+   + +F
Sbjct: 472 VLEDLCNTMKFGSLCALGGLAPIPVLSALTHF 503


>gi|238026515|ref|YP_002910746.1| formate dehydrogenase subunit beta [Burkholderia glumae BGR1]
 gi|237875709|gb|ACR28042.1| Formate dehydrogenase, beta subunit [Burkholderia glumae BGR1]
          Length = 524

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 141/393 (35%), Positives = 217/393 (55%), Gaps = 8/393 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  D + + L         E+  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 120 SIDDYLAHGGLDGLKRALTLDGAAACEELIESGLRGRGGAAFPAGIKWRTVRQAQATQ-K 178

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P+ LIEG +IA    GA    IYVR E+     +L  
Sbjct: 179 YVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVVTGATRGHIYVRSEYPHAIAALNE 238

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A+    A+G LG +   S LG++++  V  GAGAY+CGEETALLESLEGK+G  R KPP 
Sbjct: 239 AIARARAAGWLGESVLGSGLGFELE--VAKGAGAYVCGEETALLESLEGKRGVVRAKPPL 296

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT  F ++G++     VE
Sbjct: 297 PALEGLHGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGTLPFQLAGNIRQGGLVE 356

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
            +  +T  EL+ +  GG   G     A + GG     LP  Q     +DY+    +G+ +
Sbjct: 357 LAFGVTLRELLFEFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVV 414

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G   +++ D ++++ +       F   ESCG+CTPCR G+   +  + R+  G   ++++
Sbjct: 415 GHGGIVLHDDTSNLAELAEYAMQFCVLESCGKCTPCRIGSTRGVETIARIRGGDTSEKQV 474

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            LL ++   +   ++CA+G    +P+   + +F
Sbjct: 475 HLLRDLCDTMMAGSLCAMGGMTPYPVLSALDHF 507


>gi|167739672|ref|ZP_02412446.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 14]
          Length = 521

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 215/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLEGLTNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP GQ     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPEGQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++ +       F   ESCG+CTPCR G+   +  + R+  G   +R++ 
Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|206561321|ref|YP_002232086.1| NAD-dependent formate dehydrogenase subunit beta [Burkholderia
           cenocepacia J2315]
 gi|198037363|emb|CAR53296.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           cenocepacia J2315]
          Length = 525

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/410 (35%), Positives = 221/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D +  G    +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQARAAQ-KYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IYVR E+     +L+AA+     +G LG +  LG  +  ++ V  GAG+Y+CGEETAL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHV-LGSAHAFELQVAKGAGSYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE +  +T  EL+    GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDHQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|114765413|ref|ZP_01444528.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Pelagibaca bermudensis HTCC2601]
 gi|114542256|gb|EAU45286.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Roseovarius sp. HTCC2601]
          Length = 506

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 147/391 (37%), Positives = 213/391 (54%), Gaps = 6/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL    + G    + + +    + II+EVK SGLRGRGGAGF TG+KW  +    +DR  
Sbjct: 109 SLEQYEAHGGLAGLRRAIGMTAEAIIDEVKLSGLRGRGGAGFPTGIKWDTVRMAHADR-K 167

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA     A   F+Y+R E+      L  
Sbjct: 168 YIVCNADEGDSGTFADRMIMEGDPFCLIEGMAIAGLGCHAEKGFVYLRSEYPDAIAVLSR 227

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++   A+G+LG++    G+  D+ V  GAGAY+CGEET+LL SLEGK+G  R KPP PA
Sbjct: 228 AIEIARAAGVLGADVLGSGHAFDMEVRVGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 287

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G +G PT VNNV S+A VP I  +GA  Y+ FG   ++GT    I+G+V +    E +
Sbjct: 288 LEGAFGKPTVVNNVISLATVPVIFEKGAEHYANFGLGRSKGTIPLQIAGNVRHGGLFETA 347

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             ++  +++E   GG   G   + AV  GG     L   Q       Y+     G+ +G 
Sbjct: 348 FGMSLGQIVEDLGGGTASG-RAVKAVQVGGPLGAYLSPDQFD-TPFGYEEFDGQGALIGH 405

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D S D++        F   ESCG+CTPCR G    +  ++R+  G A+   I L
Sbjct: 406 AGLVVFDDSADMLGMARFAMEFCAVESCGKCTPCRIGAVRGVETLDRIAAGDAEA--IPL 463

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++ + ++  ++CALG    +P+   ++ F
Sbjct: 464 LIDLCETMQDGSLCALGGFTPYPVMSALRLF 494


>gi|254500702|ref|ZP_05112853.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
 gi|222436773|gb|EEE43452.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
          Length = 558

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/350 (37%), Positives = 203/350 (58%), Gaps = 19/350 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  +  +    P +L +N DE EPGT KDR  +  +PH L+EG ++A+ AI A 
Sbjct: 221 FPTGTKWKIVHDLPG--PKFLTINGDEGEPGTFKDRYHLESDPHRLLEGALVAAHAISAD 278

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             ++Y+R E+    E L   ++   ++G++ +       +DI +  GAGAYICGEE+A++
Sbjct: 279 RIYLYMRDEYPAVLEILNTEIEALRSAGIITT-------IDIEIRRGAGAYICGEESAMI 331

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR +PPF A VGL+G PT  +N+E++  +  I+ +G  W++  GR  ++G 
Sbjct: 332 ESIEGKRGLPRHRPPFIAQVGLFGRPTLNHNIETLFWIRDIVEKGPEWFAEQGRRGHKGF 391

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + FS+SG V  P        IT +EL+E++CGG+  G       +PGG+S   LPA  + 
Sbjct: 392 RSFSVSGRVREPGVKLAPAGITMNELLEEYCGGMEDGH-IFKGYLPGGASGGILPA-SLA 449

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L + G  +G+ A++V     D+  A   L  F+KHESCGQCTPCR GT    
Sbjct: 450 DEPLDFGTLDKHGCFIGSHAIVVFSDQDDMRDAALNLMRFFKHESCGQCTPCRSGT---- 505

Query: 360 RVMERLVKGIAQKR-EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
              E++ K +A    + D + ++   +   +IC LG AA+ P+  ++K F
Sbjct: 506 ---EKMEKLLADGDWDTDKIADLDAVMRSASICGLGQAASNPVASVLKFF 552


>gi|120405070|ref|YP_954899.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1]
 gi|119957888|gb|ABM14893.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 603

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/394 (35%), Positives = 206/394 (52%), Gaps = 21/394 (5%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNA 84
           H   + + L    +  ++ +  SGLRG GGAGF TG+KW    ++C   P    Y++ NA
Sbjct: 193 HAMTLKRCLANTPEQTVDMISESGLRGFGGAGFRTGLKW----RLCRAAPGEDKYVICNA 248

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DE EPGT KDR ++   P  +  G VIA+++IGA    +Y+R E+      LQ  + E  
Sbjct: 249 DEGEPGTFKDRALLTRSPKDVFLGMVIAAYSIGARDGILYLRAEYAYLARYLQRQLQELR 308

Query: 145 ASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
             GLLG++     G+D DI +  GAGAYICGEE+AL+ES EG +G PRLKPP+P   G  
Sbjct: 309 DDGLLGADIGGLPGFDFDIRIQLGAGAYICGEESALIESCEGNRGTPRLKPPYPIQEGYL 368

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           G PTTVNNVE+      +   GA W+   G  ++ GT+L S++G  + P   E    IT 
Sbjct: 369 GKPTTVNNVETFVAASRVTAEGAEWFRSMGTADSAGTRLLSVAGDCSAPGVYEVEWGITL 428

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
           D+++         G  +  AV  GG S  C+         + Y+ +   G      AV +
Sbjct: 429 DDVLAMV------GAPDARAVQIGGPSGECVSVAVDGRRRIAYEDIPCNG------AVTI 476

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
            + + D+++ +   + F+  ESCG C PCR GT  +   M R++ G   ++++D +    
Sbjct: 477 FNATRDLLECVTDYTKFFADESCGICVPCRAGTVDLHDTMRRILAGNGTRQDLDDVAGRG 536

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             I   + C LG  AA PI   +  F  + +ER+
Sbjct: 537 ALIRSTSRCGLGATAANPILTTLTKFPEMYQERL 570


>gi|149203817|ref|ZP_01880786.1| NADH dehydrogenase (quinone) [Roseovarius sp. TM1035]
 gi|149142934|gb|EDM30976.1| NADH dehydrogenase (quinone) [Roseovarius sp. TM1035]
          Length = 502

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 147/390 (37%), Positives = 210/390 (53%), Gaps = 6/390 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L D  + G    + + +      I+ EV  SGLRGRGGAGF TG+KW  + +  + +  Y
Sbjct: 106 LEDYAAHGGLVGLRRAIAMDAHDIVAEVTKSGLRGRGGAGFPTGIKWKTVQEAQAPQ-KY 164

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NADE + GT  DR IM  +P +L+EG  IA   +GA   ++Y+R E+      +  A
Sbjct: 165 IVCNADEGDSGTFADRMIMEGDPFSLVEGMAIAGIGVGATRGYVYLRSEYPDAIAVMCRA 224

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           V+    +G+LGS+    G+  D+ +  GAGAY+CGEETALL SLEGK+G  R KPP PA 
Sbjct: 225 VEIARGAGVLGSDVLGSGHAFDMEIRVGAGAYVCGEETALLNSLEGKRGVVRAKPPLPAL 284

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            G  G PT VNNV S+A VP I  RGA  Y+ FG   +RGT    I+G+V      E + 
Sbjct: 285 EGFLGRPTVVNNVISLATVPVIFERGAQHYADFGLGRSRGTVTLQIAGNVARGGLFETAF 344

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  E++    GG   G   + AV  GG     +P      A + Y+ L   G  LG A
Sbjct: 345 GITLGEVVNDLGGGTMTGR-PVKAVQVGGPLGAYIPVSNFD-APLGYEELDAKGGLLGHA 402

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            ++V D S D+++       F   ESCG+CTPCR G    +  ++R+  G      I LL
Sbjct: 403 GLVVFDDSADMLQMARFAMEFCAVESCGKCTPCRIGAVRGVETIDRIAAG--DGTAIPLL 460

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            ++ + ++  ++CALG    +P+   + +F
Sbjct: 461 TDLCETMKDGSLCALGGFTPFPVMSALTHF 490


>gi|84686201|ref|ZP_01014096.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665728|gb|EAQ12203.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Rhodobacterales bacterium HTCC2654]
          Length = 499

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/388 (37%), Positives = 212/388 (54%), Gaps = 12/388 (3%)

Query: 25  SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           + G    +++ L+     ++ E KASGLRGRGGAGF TG+KW  + K  +D+  Y+V NA
Sbjct: 108 AHGGLTGLERALDMDGLGVVEEAKASGLRGRGGAGFPTGIKWETVAKAEADQ-KYIVCNA 166

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DE + GT  DR IM  +P +LIEG  IA   +GA   ++Y+R E+      ++AAV+   
Sbjct: 167 DEGDSGTFADRMIMEGDPFSLIEGMAIAGVGVGATKGYVYLRSEYPDAIRVMKAAVEVAR 226

Query: 145 ASGLLGSNSKLG----YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
           A+GLLG+ S LG    +D++I V  GAGAY+CGEET+LL SLEGK+G  R KPP PA  G
Sbjct: 227 ANGLLGA-SLLGKGPAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLPALEG 283

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
             G PT VNNV S+A +P I  +GA+ Y+ FG   ++GT    I+G+V Y    E +  +
Sbjct: 284 FLGKPTVVNNVISLATIPVIFEKGAAHYANFGLGRSKGTIPLQIAGNVKYGGLYEIAFGL 343

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
              E++    GG R G    +  +  G  +    A         Y+     G  +G A +
Sbjct: 344 PLGEIVNDIAGGTRSGQP--VKAVQVGGPLGAYFAPHQFDTPFGYEEFDGAGGLIGHAGL 401

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
            V D + D++        F   ESCG+CTPCR G    +  ++R+  G    +E  LL +
Sbjct: 402 TVFDDTADMLGMARFAMEFCAVESCGKCTPCRIGAVRGVETIDRIAAGDMAAKE--LLTD 459

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + + +   ++CALG    +P+   +  F
Sbjct: 460 LCETMTDGSLCALGGFTPYPVMSAMTLF 487


>gi|254252942|ref|ZP_04946260.1| NADH dehydrogenase [Burkholderia dolosa AUO158]
 gi|124895551|gb|EAY69431.1| NADH dehydrogenase [Burkholderia dolosa AUO158]
          Length = 524

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLKYDGLAGLKNALALDGDAACEALIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTV-RHATAKQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IYVR E+     +L+AA++    +G LG    LG  +  ++ V  GAG+Y+CGEETAL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIERAREAGWLGERV-LGSAHAFELHVAKGAGSYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE +  +T  EL+    GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTATGRPARAAQV-GGPLGTYLPEHQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    + + +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-VPLDYEAYAAIDAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+ +G   +R+I LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIRQGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|53720139|ref|YP_109125.1| NAD-dependent formate dehydrogenase subunit beta [Burkholderia
           pseudomallei K96243]
 gi|53724803|ref|YP_102258.1| formate dehydrogenase subunit beta [Burkholderia mallei ATCC 23344]
 gi|67642932|ref|ZP_00441683.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei GB8 horse 4]
 gi|76809707|ref|YP_334389.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei 1710b]
 gi|121600156|ref|YP_993894.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1]
 gi|124385181|ref|YP_001026955.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC
           10229]
 gi|126450106|ref|YP_001079757.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|166999708|ref|ZP_02265542.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei PRL-20]
 gi|167816880|ref|ZP_02448560.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 91]
 gi|226197836|ref|ZP_03793410.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|254176775|ref|ZP_04883432.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|254192290|ref|ZP_04898779.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254203943|ref|ZP_04910303.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH]
 gi|254208923|ref|ZP_04915271.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU]
 gi|254260630|ref|ZP_04951684.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei 1710a]
 gi|254295606|ref|ZP_04963064.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           406e]
 gi|254360022|ref|ZP_04976292.1| formate dehydrogenase, beta subunit [Burkholderia mallei
           2002721280]
 gi|52210553|emb|CAH36536.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei K96243]
 gi|52428226|gb|AAU48819.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           23344]
 gi|76579160|gb|ABA48635.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei 1710b]
 gi|121228966|gb|ABM51484.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1]
 gi|124293201|gb|ABN02470.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei NCTC 10229]
 gi|126242976|gb|ABO06069.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei NCTC 10247]
 gi|147745455|gb|EDK52535.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH]
 gi|147750799|gb|EDK57868.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU]
 gi|148029262|gb|EDK87167.1| formate dehydrogenase, beta subunit [Burkholderia mallei
           2002721280]
 gi|157805551|gb|EDO82721.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           406e]
 gi|157987485|gb|EDO95261.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697816|gb|EDP87786.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|225930024|gb|EEH26037.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|238524152|gb|EEP87587.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei GB8 horse 4]
 gi|243064206|gb|EES46392.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei PRL-20]
 gi|254219319|gb|EET08703.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei 1710a]
          Length = 521

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 215/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP GQ     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPEGQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++ +       F   ESCG+CTPCR G+   +  + R+  G   +R++ 
Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|255525709|ref|ZP_05392641.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296184813|ref|ZP_06853224.1| putative NAD-dependent formate dehydrogenase, beta subunit
           [Clostridium carboxidivorans P7]
 gi|255510611|gb|EET86919.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050595|gb|EFG90018.1| putative NAD-dependent formate dehydrogenase, beta subunit
           [Clostridium carboxidivorans P7]
          Length = 584

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/425 (36%), Positives = 243/425 (57%), Gaps = 9/425 (2%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
           L +Q RI     G+   + +   + +  +  +++++ E   + +I EVK +GLRGRGGAG
Sbjct: 99  LKNQVRIVLKNCGIINPEKIEQYIDKDGYKALNRVVKEMTPNEVIEEVKIAGLRGRGGAG 158

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW    K       Y+V NADE +PG   DR ++  +PH ++EG  IA +AIGA 
Sbjct: 159 FPTWFKWDAARK-SKGEDKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAIAGYAIGAK 217

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETA 177
             +IYVR E+    E L+ A+ +      LG  S +G  +D DI++  GAGA++CGEETA
Sbjct: 218 KGYIYVRAEYPLAIERLKIAIKQAREKNYLG-KSIMGSSFDFDILIKTGAGAFVCGEETA 276

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PRLKPPFPA  G +G PT +NNVE+ A VP IL  G   ++ +G E ++
Sbjct: 277 LIASLEGERGMPRLKPPFPAQSGYFGKPTNINNVETYANVPWILVHGGKAFAAYGTEKSK 336

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M +T  E+I    GGI+G  +   AV  GG S  C+P  +
Sbjct: 337 GTKVFALAGKIKNGGLVEVPMGMTLREVIYGIGGGIKGDKE-FKAVQMGGPSGGCIPR-K 394

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ + + G+ +G+  ++VMD +T ++        F   ESCG+C  CR GT  
Sbjct: 395 LLDTPVDYESINKTGAIMGSGGMVVMDENTCMVDMARFFLDFTCKESCGKCVYCRIGTKR 454

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G     +ID+L E+  +++  ++C LG     PI   ++ F+      I 
Sbjct: 455 MLEILKKICSGEGSTEDIDILQELCISVKDGSLCGLGQTTPNPILTTLRYFKDEYIAHIK 514

Query: 418 QYHRC 422
             H+C
Sbjct: 515 D-HKC 518


>gi|124514246|gb|EAY55760.1| NADH dehydrogenase (Quinone) [Leptospirillum rubarum]
          Length = 453

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 155/420 (36%), Positives = 229/420 (54%), Gaps = 19/420 (4%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           G  LS  +  G ++ + ++L        I E+K +GLRGRGG+GF T +KW    KV   
Sbjct: 29  GPGLSTYLKDGGYEGLRRVLGNLSPSEAIEELKEAGLRGRGGSGFPTAIKWE---KVAHH 85

Query: 76  R--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           R    Y+V N  E EPG+ KD  ++   PH ++EG +IASFA+ A  A ++V+  F R  
Sbjct: 86  RIREKYVVANGSEGEPGSHKDHFLIETNPHQILEGMIIASFAVRARKAILFVKDSFPRGI 145

Query: 134 ESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQP 189
           ++L+ A DE    G LG     S+L  D++I V  G  AYI GEETALLE+LEG+     
Sbjct: 146 DALKKARDEAREEGFLGDRILGSELSLDLEIFV--GPSAYIAGEETALLEALEGRLPKPR 203

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
              P +P + GLY CPT VNNVE+ A V  I R GA W+   G   + GT +FS++G V 
Sbjct: 204 PKPPGYPTDRGLYNCPTVVNNVETYAHVSHIFRHGAHWFKRRGLPKSPGTMVFSVTGSVK 263

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P  VE  +  +   L+E++ GG   G + + +  PGG S   LPA  +    +DYD L+
Sbjct: 264 RPIVVELPLGTSLRTLVEEYAGGAPDG-ERIESFYPGGPSFGVLPAKDL-DTPLDYDALR 321

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            +GSG+G+  VIV+      +    + + FY+  SCGQC PCR GT  +  ++E    G 
Sbjct: 322 ALGSGIGSGGVIVLSDKDCPVATARQFAAFYETGSCGQCPPCRIGTENLHEILELFENGK 381

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID-----QYHRCNF 424
           A +  +  +  +S  I+GR  C L  A+A+ ++ L+++F    +  +D     + HR  F
Sbjct: 382 ASRENVQRILRISDMIKGRGNCGLITASAYSVESLVRHFPEEFQSHLDDGGCRRQHRTPF 441


>gi|89055050|ref|YP_510501.1| NADH dehydrogenase (quinone) [Jannaschia sp. CCS1]
 gi|88864599|gb|ABD55476.1| formate dehydrogenase beta subunit [Jannaschia sp. CCS1]
          Length = 500

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 150/396 (37%), Positives = 214/396 (54%), Gaps = 17/396 (4%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL++  + G    + + LE   + I   V  SGLRGRGGAGF TG+KW+ + +  +D P 
Sbjct: 104 SLAEYEAHGGLTGLRRALEMTPEQITTHVTESGLRGRGGAGFPTGIKWNTVRQ--ADGPQ 161

Query: 79  -YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V NADE + GT  DR IM  +P  LIEG VIA   +GA   +IY+R E+    E ++
Sbjct: 162 KYIVCNADEGDSGTFADRMIMEGDPFCLIEGMVIAGLGVGATKGYIYLRSEYPDAIEVME 221

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           +A++    + +LG      ++ DI V  GAGAY+CGEET+LL SLEGK+G  R KPP PA
Sbjct: 222 SAIEITRENNVLGHVLHSEHEFDIEVRVGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 281

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G  G PT VNNV S+A VP I  +GA  Y+ FG   ++GT    I+G+VN+    E +
Sbjct: 282 LEGFLGRPTVVNNVISLATVPVIFEKGAEHYASFGLGRSKGTMPVQIAGNVNHGGLFETA 341

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG-----AIMDYDGLKEMG 312
             +   EL+    GG   G   + AV  GG      P G   G         Y+     G
Sbjct: 342 FGMPLGELVNDIAGGSATGRP-VKAVQVGG------PLGAYFGPEKFDTPFAYEPFDGAG 394

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
             +G A V+V D S D++        F   ESCG+CTPCR G    +  ++R+ +G A  
Sbjct: 395 GLIGHAGVVVFDDSADMLGMARFAMEFCAIESCGKCTPCRIGAVRGVETLDRIREGDATA 454

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             I LL ++ + ++  ++CALG    +P+   ++ F
Sbjct: 455 --IPLLVDLCETMKDGSLCALGGFTPYPVMSALEQF 488


>gi|206602055|gb|EDZ38537.1| NADH dehydrogenase (quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 617

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 149/423 (35%), Positives = 232/423 (54%), Gaps = 9/423 (2%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62
           Q +I T   G+    S+ D ++   +  + K L     + ++ +V  SGLRGRGG GF T
Sbjct: 135 QVKIVTKRCGMIDPLSIEDYIAMDGYKALKKALTSMTPEEVVEQVTKSGLRGRGGGGFPT 194

Query: 63  GMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHC 120
           G+KWS   K  S  P  ++V NADE +PG   DR ++  +PH ++EG +IAS+A+G A  
Sbjct: 195 GLKWSLTQK--SPGPEKFVVCNADEGDPGAFMDRSVLEGDPHAVLEGMIIASYAVGGAKK 252

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY R E+      L+ A+ +  A   LG N    G   DI +  GAGAY+CGEETALL
Sbjct: 253 GYIYCRAEYPLAIRHLRKAIQDAKAHNFLGDNILGTGLCFDIEIKEGAGAYVCGEETALL 312

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+ G++G P  KPPFPA  G++G P+ +NNVE++  +  I+  G  WY+ +G E  +GT
Sbjct: 313 ASIMGERGMPWPKPPFPAQKGVWGKPSVINNVETLGNIGHIILNGGEWYASYGSEKTKGT 372

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K F+++G +     +E        E+I    GG+        A   GG S  C+P   + 
Sbjct: 373 KTFALTGSIKNSGLIEVPAGTPLREIIYSIGGGMVEKKIPFKAAQLGGPSGGCIPVDGLD 432

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             + D++ +   G+ +G+  ++VMD +  I+        F + ESCG+CTPCR G+  M+
Sbjct: 433 TPV-DFENVVAAGAIMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSKIML 491

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ R+ +G  Q+ ++D L  +S  ++  ++C LG AA  P+   I+ FR   E  I + 
Sbjct: 492 DILTRITEGKGQEGDLDELVRLSMYVKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI-RD 550

Query: 420 HRC 422
            RC
Sbjct: 551 KRC 553


>gi|170732343|ref|YP_001764290.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia MC0-3]
 gi|254246011|ref|ZP_04939332.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia PC184]
 gi|124870787|gb|EAY62503.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia PC184]
 gi|169815585|gb|ACA90168.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia MC0-3]
          Length = 525

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 144/410 (35%), Positives = 221/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S+ D +  G    +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQARAAQ-KYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
            +IYVR E+     +L+AA+     +G LG +  LG  +  ++ V  GAG+Y+CGEETAL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHV-LGSAHAFELHVAKGAGSYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE +  +T  EL+    GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDHQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIVRIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHF 504


>gi|124268893|ref|YP_001022897.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
 gi|124261668|gb|ABM96662.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
          Length = 520

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 220/409 (53%), Gaps = 5/409 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     GL    SL+D  +   W  + + L      +++EV  SGLRGRGGA F
Sbjct: 101 LAKQERLCFARMGLTDPLSLADYEAHEGWAGLRRALAMPDAAVVDEVLQSGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S +  Y+V NADE + GT  DR  M  +P+ LIEG  IA+ A+GA  
Sbjct: 161 PTGIKWKTVMNTPSAQ-KYIVCNADEGDSGTYSDRMTMEGDPYMLIEGMTIAALAVGATR 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+     +L  A+    A+G LGS+    G    + V   AGAY+CGEETALL
Sbjct: 220 GYVYVRSEYPHAIATLNDAIARAEAAGFLGSDVLGSGRAFHLQVRKAAGAYVCGEETALL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S A VP IL RGA+ Y  +G   + GT
Sbjct: 280 ESLEGKRGIVRAKPPLPAIEGLFGQPTVINNVISFASVPLILARGAAHYRDYGVGRSMGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V     VE++  +T  EL+    GG   G   + AV  GG     +P  +  
Sbjct: 340 LPIQLAGNVKRGGLVEKAFGVTLRELLYDFGGGTASG-RPIKAVQVGGPLGTYVPESKWD 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+     G  +G   ++V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 399 -VPLDYEAYAAFGGVVGHGGIVVHDDTADMAKLARYAMEFCAIESCGKCTPCRIGSTRGV 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++R+   + +  ++ LL ++   +   ++CA+G    +P+   + ++
Sbjct: 458 EVIDRITANVNRPAQVKLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHY 506


>gi|89902039|ref|YP_524510.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118]
 gi|89346776|gb|ABD70979.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118]
          Length = 591

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 154/405 (38%), Positives = 226/405 (55%), Gaps = 25/405 (6%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           FT  Y +   SL     R  +     ++  E+  + ++  ++ +GLRG GGAGF  G KW
Sbjct: 202 FTAHYAINLISLEAYRQRAGYALAAAVVNGEEPAEGVMAALEDAGLRGLGGAGFPAGRKW 261

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             + +  +  P  + VN DE EPGT KDR  +  +PH  +EG +IA+   G    +IY+R
Sbjct: 262 RIVREQSA--PRVMAVNIDEGEPGTFKDRSYLERDPHRFLEGMLIAAQVAGTEACYIYLR 319

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
            E+   R+ L   ++   A         L Y   I +  GAGAYICGEE+A++ES+EGK+
Sbjct: 320 DEYHDARKMLTQEIEALQAD----PPCPLPY---IELRRGAGAYICGEESAMIESIEGKR 372

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPRL+PP+ A +GL+G PT V+N E++  V  I+ +G  W+S FGR   +G + FS+SG
Sbjct: 373 GQPRLRPPYVAQLGLFGKPTLVHNFETLYWVRDIVEKGPQWFSSFGRHGRQGLRSFSVSG 432

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            +  P        IT  ELI+++CGG+  G   L A +PGG+S   LPA  +    +D+D
Sbjct: 433 RIKLPGVKLAPAGITVQELIDEYCGGMLDG-HTLYAYLPGGASGGILPAS-LNHIPLDFD 490

Query: 307 GLKEMGSGLGTAAVIVM---DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
            L+  G  +G+AAVIV+   DR+ D   +  R   F+  ESCGQCTPCR GT   +R+ME
Sbjct: 491 TLQPYGCFIGSAAVIVLSQFDRARDAALSAMR---FFAAESCGQCTPCRVGTAKAVRLME 547

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             V   A       L +++  +   +IC LG AA  P++ + K F
Sbjct: 548 APVWDNAT------LEDLNAVMAEASICGLGQAAPNPVRCVQKYF 586


>gi|90426117|ref|YP_534487.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
 gi|90108131|gb|ABD90168.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
          Length = 518

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 226/409 (55%), Gaps = 5/409 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +  +S+ D  + G ++ +++ L    + II++V  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFARCGVIDPRSVEDYRAHGGYEGLERALALTSEAIIDDVIKSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  + +  Y+  NADE + GT  DR IM  +P+ +IEG  IA  A+GA  
Sbjct: 158 PTGIKWRTVAQAAAAQ-KYICCNADEGDSGTFADRMIMEGDPYMVIEGMTIAGIAVGATR 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E++ AA+     +G LG    +  +D DI V  GAGAYICGEETA+L
Sbjct: 217 GYIYIRSEYPHAVEAINAAIAGARRAGYLGPGIGRSRHDFDIEVRVGAGAYICGEETAML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA+ GL+G PT +NNV S A +P IL  GA  Y+  G   +RGT
Sbjct: 277 ESIEGKRGVVRAKPPLPAHKGLFGQPTVINNVLSFAAIPFILAGGAQAYADCGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K   + G++ +    E +  IT  EL++   GG   G   + AV  GG      P  ++ 
Sbjct: 337 KPIQLGGNIKHGGLFEVAFGITLGELVDDIGGGTASGR-PVRAVQVGGPLGAYFPR-ELF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   V+V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPFDYEAFAARSGLVGHGGVVVFDDTVDMAKQARFAMQFCAIESCGKCTPCRIGSQRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             +++++ G    + I LL ++ + ++  ++CALG    +P+   + +F
Sbjct: 455 ETIDKIINGDRAPQNIALLEDLCQTMKLGSLCALGGFVPYPVLSALTHF 503


>gi|188584099|ref|YP_001927544.1| NADH dehydrogenase (quinone) [Methylobacterium populi BJ001]
 gi|179347597|gb|ACB83009.1| NADH dehydrogenase (quinone) [Methylobacterium populi BJ001]
          Length = 519

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 139/391 (35%), Positives = 215/391 (54%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D  + G +  ++  L+   + ++ +V+ SGLRGRGGAGF  G+KW+ +    SD+  
Sbjct: 117 SVEDYRAHGGYRGLEAALKLDAEGVVAQVRDSGLRGRGGAGFPAGIKWNTVMLAQSDQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA   +IY R E+ +  ++L+ 
Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGATRGYIYCRSEYPQSFKTLRD 235

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G+LG N    G    + V  GAGAYICGEET+LLESLEGK+G  R KPP PA
Sbjct: 236 AIANGVKAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G  G PT VNNV +   VP I+  GA  Y+ +G   + GT    ++G++ +   +E +
Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPWIMEHGAKAYAEYGMGRSLGTLPIQLAGNIKHGGLIEYA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  ++I++  GG   G   + AV  GG      P  ++    +DY+ +      +G 
Sbjct: 356 FGITIRQVIDEFGGGTASGRP-VRAVQVGGPLGAYFP-DELLDTPLDYEAMAAKKGLVGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ K       F   ESCG+CTPCR G    +  M++++ GI  +  + L
Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++ + +   ++CA+G     P+   I NF
Sbjct: 474 VEDLCEIMTDGSLCAMGGLTPMPVMSAITNF 504


>gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3]
 gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3]
          Length = 596

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 7/390 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           ++E   + +I E+  SGLRGRGG GF TG+KW    KV + +  Y+V NADE +PG   D
Sbjct: 146 LVEMTPEEVIKEIMDSGLRGRGGGGFPTGLKWQITRKVQAPQ-KYVVCNADEGDPGAFMD 204

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R I+  +PH+++E   I  +  GA    +Y+R E+    E L+ A+ +    GLLG N  
Sbjct: 205 RSILEGDPHSIVEAMAINGYCTGASKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIF 264

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              +  DI + +GAGA++CGEETAL+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+
Sbjct: 265 GTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVET 324

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A +P IL RGA W+S  G E ++GTK+F+++G VN    +E  M  T  E +    GG 
Sbjct: 325 YANIPVILLRGAKWFSSIGTEKSKGTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGG 383

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                   AV  GG S  CL    +   I DYD L   GS +G+  +IVMD   D + A+
Sbjct: 384 IKDGKKFKAVQTGGPSGGCLTEKHLDLPI-DYDNLLAAGSMMGSGGMIVMDED-DCMVAM 441

Query: 334 WRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
            +  + F   ESCG+C PCR G   +  +++++  G   + ++  L  ++  I+   +C 
Sbjct: 442 AKFYLDFTVEESCGKCAPCRIGNKRLHEILQKITSGNGTEEDLTRLRNLAMVIKDTALCG 501

Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           LG  +  P+   + NF       + + HRC
Sbjct: 502 LGQTSPNPVLSTMDNFYDEYLAHVRE-HRC 530


>gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
 gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
          Length = 596

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 7/390 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           ++E   + +I E+  SGLRGRGG GF TG+KW    KV + +  Y+V NADE +PG   D
Sbjct: 146 LVEMTPEEVIKEIMDSGLRGRGGGGFPTGLKWQITRKVQAPQ-KYVVCNADEGDPGAFMD 204

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R I+  +PH+++E   I  +  GA    +Y+R E+    E L+ A+ +    GLLG N  
Sbjct: 205 RSILEGDPHSIVEAMAINGYCTGASKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGKNIF 264

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              +  DI + +GAGA++CGEETAL+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+
Sbjct: 265 GTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVET 324

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A +P IL RGA W+S  G E ++GTK+F+++G VN    +E  M  T  E +    GG 
Sbjct: 325 YANIPVILLRGAKWFSSIGTEKSKGTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGG 383

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                   AV  GG S  CL    +   I DYD L   GS +G+  +IVMD   D + A+
Sbjct: 384 IKDGKKFKAVQTGGPSGGCLTEKHLDLPI-DYDNLLAAGSMMGSGGMIVMDED-DCMVAM 441

Query: 334 WRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
            +  + F   ESCG+C PCR G   +  +++++  G   + ++  L  ++  I+   +C 
Sbjct: 442 AKFYLDFTVEESCGKCAPCRIGNKRLHEILQKITSGNGAEEDLTRLRNLAMVIKDTALCG 501

Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           LG  +  P+   + NF       + + HRC
Sbjct: 502 LGQTSPNPVLSTMDNFYDEYLAHVRE-HRC 530


>gi|240141253|ref|YP_002965733.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta
           subunit [Methylobacterium extorquens AM1]
 gi|240011230|gb|ACS42456.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta
           subunit [Methylobacterium extorquens AM1]
          Length = 519

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 142/391 (36%), Positives = 211/391 (53%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D  + G +  ++  L+     I+ +V+ SGLRGRGGAGF  G+KW+ +    SD+  
Sbjct: 117 SVEDYRAHGGYRGLEAALKLDAKGIVAQVRDSGLRGRGGAGFPAGIKWNTVMLAQSDQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA   +IY R E+ +  ++L+ 
Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGATRGYIYCRSEYPQSFKTLRD 235

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G+LG N    G    + V  GAGAYICGEET+LLESLEGK+G  R KPP PA
Sbjct: 236 AIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G  G PT VNNV +   VP IL  GA  Y+ +G   + GT    ++G++     +E +
Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLGTLPIQLAGNIRQGGLIEYA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  ++IE   GG   G   + AV  GG      P   +    +DY+ +      +G 
Sbjct: 356 FGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFP-DDLLDTPLDYEAMAAKKGLVGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ K       F   ESCG+CTPCR G    +  M++++ GI  +  + L
Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++ + +   ++CA+G     P+   I NF
Sbjct: 474 VEDLCEIMTDGSLCAMGGLTPMPVMSAITNF 504


>gi|134277692|ref|ZP_01764407.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305]
 gi|134251342|gb|EBA51421.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305]
          Length = 521

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAAAQ-KYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
             IYVR E+     +L  A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETAL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F +SG+V     VE +  +T  EL+    GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLSGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-IPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|260576446|ref|ZP_05844436.1| NADH dehydrogenase (quinone) [Rhodobacter sp. SW2]
 gi|259021329|gb|EEW24635.1| NADH dehydrogenase (quinone) [Rhodobacter sp. SW2]
          Length = 509

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 147/391 (37%), Positives = 210/391 (53%), Gaps = 6/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL++  + G    + + L      I+ EV ASGLRGRGGAGF TG+KW  + +  + +  
Sbjct: 112 SLAEFQAHGGLAGLRRALAMVPADIVAEVTASGLRGRGGAGFPTGIKWKTVAEAGAGQ-K 170

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA   ++Y+R E+      +  
Sbjct: 171 YIVCNADEGDSGTFADRMIMEGDPFLLIEGMTIAGLAVGATKGYVYIRSEYPDAIAVMTE 230

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV    A GLLG++    G   DI +  GAGAY+CGEET+LL SLEGK+G  R KPP PA
Sbjct: 231 AVVLARAEGLLGASVLGSGKAFDIEIRTGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 290

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G  G PT VNNV S+  VP IL +GA +Y  FG   +RGT    I+G+V +    E +
Sbjct: 291 LHGFLGRPTVVNNVISLTSVPIILDKGAGYYRDFGLGRSRGTIPLQIAGNVRFGGLFEVA 350

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +T  E+++   GG   G   + AV  GG      P  ++      Y+     G  +G 
Sbjct: 351 FGLTLGEIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-ELFDTPFCYEEYAGKGGLVGH 408

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D + D++        F   ESCG+CTPCR G    M  ++R+ +G      I L
Sbjct: 409 AGLVVFDDTADMLHQARFAMEFCAIESCGKCTPCRIGAVRGMETLDRIGRG--DTAAIPL 466

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++   ++  ++CALG    +P+   + +F
Sbjct: 467 LSDLCDTMKAGSLCALGGFTPYPVMSALTHF 497


>gi|206602860|gb|EDZ39341.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 453

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 155/420 (36%), Positives = 229/420 (54%), Gaps = 19/420 (4%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           G  LS  +  G ++ + ++L        I E+K +GLRGRGG+GF T +KW    KV + 
Sbjct: 29  GPGLSTYLKDGGYEGLRRVLGNLSPSEAIEELKEAGLRGRGGSGFPTAIKWE---KVANH 85

Query: 76  R--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           R    Y+V N  E EPG+ KD  ++   PH ++EG +IASFA+ A  A ++V+  F R  
Sbjct: 86  RIREKYVVANGSEGEPGSHKDHFLIETNPHQILEGMIIASFAVQARKAILFVKDSFPRGI 145

Query: 134 ESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQP 189
           ++L+ A DE    G LG     S+   D++I V  G  AYI GEETALLE+LEG+     
Sbjct: 146 DALKKARDEAREEGFLGDRILGSEFSIDLEIFV--GPSAYIAGEETALLEALEGRLPKPR 203

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
              P +P + GLY CPT VNNVE+ A V  I R GA W+   G   + GT +FS++G V 
Sbjct: 204 PKPPGYPTDRGLYNCPTVVNNVETYAHVSHIFRHGAHWFKRRGLPKSPGTMVFSVTGSVR 263

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P  VE  +  +   L+E++ GG   G + + +  PGG S   LPA  +    +DYD L+
Sbjct: 264 RPIVVELPLGTSLRTLVEEYAGGAPDG-ERIESFYPGGPSFGVLPAKDL-DTPLDYDALR 321

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            +GSG+G+  VIV+      +    + + FY+  SCGQC PCR GT  +  ++E    G 
Sbjct: 322 ALGSGIGSGGVIVLSDKDCPVATARQFADFYETGSCGQCPPCRIGTENLHEILELFETGK 381

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID-----QYHRCNF 424
           A K  +  +  +S  I+GR  C L  A+A+ ++ L+++F    +  +D     + HR  F
Sbjct: 382 ASKENVQRILRISDMIKGRGNCGLITASAYSVESLVRHFPEEFQSHLDDKGCRRQHRTPF 441


>gi|254441379|ref|ZP_05054872.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Octadecabacter antarcticus 307]
 gi|198251457|gb|EDY75772.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Octadecabacter antarcticus 307]
          Length = 505

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 145/391 (37%), Positives = 214/391 (54%), Gaps = 6/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G    + + +      I+ EV  SGLRGRGGAGF TG+KW+ +    +D+  
Sbjct: 108 SLPDYEAHGGLVGLRRAIAMTPADIVGEVTTSGLRGRGGAGFPTGIKWNTVLGAKADQ-K 166

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P TLIEG +IA  A+ A   ++Y+R E+    + +  
Sbjct: 167 YIVCNADEGDSGTFADRMIMEGDPFTLIEGMIIAGLAVEATKGYVYLRSEYPDAIDIMDK 226

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV     +GLLG++    G   D+ +  GAGAY+CGEET+LL SLEGK+G  R KPP PA
Sbjct: 227 AVVLARHAGLLGADVLGSGRSFDMEIRVGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 286

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G  G PT VNNV S+A VP ++ +GA  Y+ FG   ++GT    I+G+V +    E +
Sbjct: 287 LEGFLGKPTVVNNVISLATVPVVMEKGAQHYADFGLGRSKGTIPIQIAGNVKFGGLYETA 346

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +   +L++K  GG   G   + AV  GG     +P  +       Y+     G  +G 
Sbjct: 347 FGMPLGDLVDKVAGGSLSGR-PVKAVQVGGPLGAYMPRSKFE-TPFGYEEFDGQGGLIGH 404

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D S D++        F   ESCG+CTPCR G    +  ++R+ KG      I+L
Sbjct: 405 AGMVVFDDSIDMLGMARFAMEFCAVESCGKCTPCRIGAVRGVETIDRIGKG--DTAAIEL 462

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++ + ++  ++CALG    +P+   + NF
Sbjct: 463 LEDLCETMKDGSLCALGGFTPFPVLSALHNF 493


>gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
 gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
          Length = 596

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 7/390 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           ++E   + +I E+  SGLRGRGG GF TG+KW    KV + +  Y+V NADE +PG   D
Sbjct: 146 LVEMTPEEVIKEIMDSGLRGRGGGGFPTGLKWQITRKVQAPQ-KYVVCNADEGDPGAFMD 204

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R I+  +PH+++E   I  +  GA    +Y+R E+    E L+ A+ +    GLLG N  
Sbjct: 205 RSILEGDPHSIVEAMAINGYCTGASKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIF 264

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              +  DI + +GAGA++CGEETAL+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+
Sbjct: 265 GTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVET 324

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A +P IL RGA W+S  G E ++GTK+F+++G VN    +E  M  T  E +    GG 
Sbjct: 325 YANIPVILLRGAKWFSSIGTEKSKGTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGG 383

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                   AV  GG S  CL    +   I DYD L   GS +G+  +IVMD   D + A+
Sbjct: 384 IKDGKKFKAVQTGGPSGGCLTEKHLDLPI-DYDNLLAAGSMMGSGGMIVMDED-DCMVAM 441

Query: 334 WRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
            +  + F   ESCG+C PCR G   +  +++++  G   + ++  L  ++  I+   +C 
Sbjct: 442 AKFYLDFTVEESCGKCAPCRIGNKRLHEILQKITSGNGAEEDLTRLRNLAMVIKDTALCG 501

Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           LG  +  P+   + NF       + + HRC
Sbjct: 502 LGQTSPNPVLSTMDNFYDEYLAHVRE-HRC 530


>gi|317970222|ref|ZP_07971612.1| NADH dehydrogenase (quinone) [Synechococcus sp. CB0205]
          Length = 498

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 152/394 (38%), Positives = 237/394 (60%), Gaps = 12/394 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +SL ++ + G +  + ++L++     II  V+ SGLRGRGGAG+ TG+KW+ +  +  D 
Sbjct: 102 ESLEEAEAAGAYLQLRRVLQENDPLAIIERVRRSGLRGRGGAGYPTGLKWAAVAAMPGDS 161

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
              +V NADE +PG   DR +M  +PHTL+EG VIA+FA+GA   +IYVRGE+    E L
Sbjct: 162 -KVVVCNADEGDPGAFMDRTVMEGDPHTLLEGMVIAAFAVGAERGWIYVRGEYPLAIERL 220

Query: 137 QAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           +  +++   SG LG S    G+  D+ +  GAGAY+CGEETAL+ S+EG++G PR +PPF
Sbjct: 221 RRGIEQARQSGWLGGSVGASGFRFDLELRVGAGAYVCGEETALIHSIEGRRGVPRPRPPF 280

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G++G PT +NNVE+ A +P +LR G   Y        +GTK+FS++GHV     VE
Sbjct: 281 PAEQGVHGFPTLINNVETFANIPALLRLGLEAY-------GQGTKVFSLTGHVQRSGVVE 333

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  +   ++E   GG + G   + AV  GG S  C+PA  +   + DYD L+E+G+ +
Sbjct: 334 VPMGTSLRTIVETMAGGPKNG-HQIKAVQTGGPSGGCVPASHLDTPV-DYDSLRELGTIM 391

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  ++VMD +TD++        F + ESCG+C PCR GT  +  ++ +L+ G     ++
Sbjct: 392 GSGGMVVMDDTTDMVDLAAFFMAFCREESCGKCIPCRCGTVQLEILLRKLLAGQGTGSDL 451

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             L  +   ++  ++C LG  A  P+   ++++R
Sbjct: 452 SQLESLCHTVKEASLCGLGQNAPNPVLSSLRHYR 485


>gi|19527557|gb|AAL89893.1| RE33648p [Drosophila melanogaster]
          Length = 239

 Score =  236 bits (603), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/179 (61%), Positives = 134/179 (74%), Gaps = 1/179 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALI 228


>gi|115526637|ref|YP_783548.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53]
 gi|115520584|gb|ABJ08568.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53]
          Length = 518

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 146/392 (37%), Positives = 222/392 (56%), Gaps = 4/392 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +S+ D  + G ++ + + L    D II++V  SGLRGRGGAGF TG+KW  + +  ++  
Sbjct: 115 RSIEDYCANGGYEGLQRALALPSDAIIDDVVKSGLRGRGGAGFPTGIKWRTVAQTEAEH- 173

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+  NADE + GT  DR +M  +P+ +IEG  IA  A+GA   +IY+R E+    ES+ 
Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPYMVIEGMTIAGIAVGATRGYIYIRSEYPYAVESMN 233

Query: 138 AAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           AA+     +G LG    +  +D DI V  GAGAYICGEET+++ES+EGK+G  R KPP P
Sbjct: 234 AAIAGARRAGWLGPGLGRSRHDFDIEVRVGAGAYICGEETSMMESIEGKRGLVRAKPPLP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GL+G PT +NNV + A VP IL  GA  Y+  G   +RGTK   ++G+V +    E 
Sbjct: 294 AHKGLFGKPTVINNVLTFAAVPFILAGGAQAYADCGMGRSRGTKPIQLAGNVKHGGLFEV 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  IT  EL+++  GG   G   + AV  GG      P   +     DY+        +G
Sbjct: 354 AFGITLGELVDEVGGGTASG-RPVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGLVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              V+V D + D+ K       F   ESCG+CTPCR G+   +  ++++++G    + I 
Sbjct: 412 HGGVVVFDDTVDMAKQARFAMQFCSIESCGKCTPCRIGSVRGVETIDKIIEGDRSAQNIA 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++ + ++  ++CALG    +P+   +K+F
Sbjct: 472 LLEDLCQTMKLGSLCALGGFVPFPVLSALKHF 503


>gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
          Length = 596

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 218/390 (55%), Gaps = 7/390 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           ++E   + +I E+  SGLRGRGG GF TG+KW    KV + +  Y+V NADE +PG   D
Sbjct: 146 LVEMTPEEVIKEIMDSGLRGRGGGGFPTGLKWQITRKVQAPQ-KYVVCNADEGDPGAFMD 204

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R I+  +PH+++E   I  +  GA+   +Y+R E+    E L+ A+ +    GLLG N  
Sbjct: 205 RSILEGDPHSIVEAMAINGYCTGANKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIF 264

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              +  DI + +GAGA++CGEETAL+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+
Sbjct: 265 GTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVET 324

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A +P IL RGA W+S  G E ++GTK+F+++G VN    +E  M  T  E +    GG 
Sbjct: 325 YANIPVILLRGAKWFSSIGTEKSKGTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGG 383

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                   AV  GG S  CL    +   I DYD L   GS +G+  +IVMD   D + A+
Sbjct: 384 IKDGKKFKAVQTGGPSGGCLTEKHLDLPI-DYDNLLAAGSMMGSGGMIVMDED-DCMVAM 441

Query: 334 WRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
            +  + F   ESCG+C PCR G   +  +++++  G   + ++  L  ++  I+   +C 
Sbjct: 442 AKFYLDFTVEESCGKCAPCRIGNKRLHEILQKITSGNGTEEDLIRLRNLAMVIKDTALCG 501

Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           LG  +  P+   + NF       + + HRC
Sbjct: 502 LGQTSPNPVLSTMDNFYDEYLAHVRE-HRC 530


>gi|104780976|ref|YP_607474.1| formate dehydrogenase subunit beta [Pseudomonas entomophila L48]
 gi|95109963|emb|CAK14668.1| putative formate dehydrogenase, beta subunit [Pseudomonas
           entomophila L48]
          Length = 517

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 149/409 (36%), Positives = 217/409 (53%), Gaps = 7/409 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           T Q  +F      +  SL D  + G ++ + +      D ++  V  SGLRGRGGA F  
Sbjct: 100 TQQRLLFARAGITRPLSLDDYHANGGFEGLRQATLMEGDEVVAAVLDSGLRGRGGAAFPA 159

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW  + +  + R  Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA   +
Sbjct: 160 GIKWRTVRQAQAVR-KYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGASHGY 218

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESL 182
           IYVR E+      L  A+     +G L      G    + V  GAGAYICGEETALLES+
Sbjct: 219 IYVRSEYPDAIRVLNEAILLAREAGYLDVAGN-GVAFHLEVRVGAGAYICGEETALLESI 277

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT  F
Sbjct: 278 EGKRGIVRAKPPLPALEGLFGQPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTLPF 337

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            ++G+V     VE +  +T  EL+E + GG   G   L A   GG     +P        
Sbjct: 338 QLAGNVLRGGLVERAFGLTLRELVEGYGGGTASG-RPLKAAQVGGPLGAWVPPTNFD-TP 395

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DY+    MG+ LG   V+V D + D+         F   ESCG+CTPCR G+   + V+
Sbjct: 396 LDYEAFAAMGAMLGHGGVVVADDTLDMAGMARFALQFCAEESCGKCTPCRIGSTRGLEVI 455

Query: 363 ERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +RL+       ++ +  LL ++   ++  ++CA+G    +P+   + +F
Sbjct: 456 DRLIASTDPAYRQGQAGLLRDLCDTMQYGSLCAMGGMTPYPVVSALDHF 504


>gi|146278886|ref|YP_001169045.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025]
 gi|145557127|gb|ABP71740.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025]
          Length = 509

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 18/396 (4%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L +  + G ++ + + +   R  I+ EV  SGLRGRGGAGF TG+KW  + +  +D+  Y
Sbjct: 113 LEEYEAHGGFEGLHRAIGMSRAEILQEVIESGLRGRGGAGFPTGIKWKTVSEAQADQ-KY 171

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NADE + GT  DR IM  +P TLIEG  IA  A GA   ++Y+R E+    E +  A
Sbjct: 172 IVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYVYMRSEYPDAVEVMIEA 231

Query: 140 VDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           V      GLLG +   S   +D++I V  GAGAY+CGEET+LL SLEGK+G  R KPP P
Sbjct: 232 VRIARGHGLLGPSVMGSGRAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLP 289

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  G  G PT VNNV S+A +P I ++GA++Y  FG   +RGT    I+G+V      E 
Sbjct: 290 ALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPLQIAGNVKRGGLFEI 349

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG-- 314
           +  ++  ++++   GG   G   + AV  GG      P      A+ D     E  +G  
Sbjct: 350 AFGMSLGQIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-----ALFDTPFCYEEFAGAE 403

Query: 315 --LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
             +G A ++V D + D++K       F   ESCG+CTPCR G    M  ++R+ +G A  
Sbjct: 404 GLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETVDRIARGDAAA 463

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             I LL ++   ++  ++CALG    +P+   + +F
Sbjct: 464 --IPLLTDLCATMKSGSLCALGGFTPYPVMSALTHF 497


>gi|110681348|ref|YP_684355.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh
           114]
 gi|109457464|gb|ABG33669.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh
           114]
          Length = 560

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 218/393 (55%), Gaps = 21/393 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           ++ +   + G +  +  + E G DW  + ++V ASGLRG GGAGF +G KW F+    + 
Sbjct: 183 ETFAKYQAEGGYTALQDLRENG-DWEAVQDKVLASGLRGLGGAGFPSGKKWGFV--RANP 239

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   +IY+R E+      
Sbjct: 240 GPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAERCYIYMRDEYPAVLHI 299

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L   +     +G++      G+   I +  GAGAYICGEE+A++ES+EGK+G PR +PP+
Sbjct: 300 LAEEIKALEDAGIVAP----GF---IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPY 352

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A VGL+G PT V+N+E++  V  I R G    S   +    G + +S+SG V  P    
Sbjct: 353 VAQVGLFGQPTLVHNIETLHWVARICREGPETLSSTEKNGRVGLRSYSVSGRVAKPGVYL 412

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  ++IE   GG+  G     A  PGG S   LPA  +    +D+D L+ +G+ +
Sbjct: 413 LPAGSTITDIIEA-AGGMAEG-HVFKAYQPGGPSSGLLPA-SINDVPLDFDTLQPLGTFI 469

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M+      A K + 
Sbjct: 470 GSAAVVVLSDQDKARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------ADKWDT 523

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           DLL E+S  +   +IC LG AA  PI+  +K+F
Sbjct: 524 DLLDELSTAMVDASICGLGQAAPNPIRLTMKHF 556


>gi|218532919|ref|YP_002423735.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium chloromethanicum CM4]
 gi|218525222|gb|ACK85807.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium chloromethanicum CM4]
          Length = 572

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 137/355 (38%), Positives = 196/355 (55%), Gaps = 21/355 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  +       P  + VN DE EPGT KD+  +  +PH  +EG +I +  + A 
Sbjct: 232 FPTGRKWRSVRG--EPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAA 289

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+   RE L   + +    G             I +  GAGAYICGEE++L+
Sbjct: 290 EVYIYLRDEYPISREILAREIAKLPEGG-----------TRIHLRRGAGAYICGEESSLI 338

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR KPPFP  VGL+  PT +NN+E++  V  ++ RGA W+   GR    G 
Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGL 398

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P        +T  ELI+++CGGI  G  +  A +PGG+S   LPA  M 
Sbjct: 399 RSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGISDG-HSFAAYLPGGASGGILPA-SMN 456

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L++ G  +G+AAV+++    D+  A   L  F++ ESCGQCTPCR GT    
Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKAR 516

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            +ME  V       + DLL E+++ +   +IC LG AA+ P+  +IK F  L  E
Sbjct: 517 MLMENGVW------DTDLLGELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565


>gi|240141432|ref|YP_002965912.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens AM1]
 gi|22652727|gb|AAN03798.1|AF489516_1 tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens]
 gi|240011409|gb|ACS42635.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens AM1]
          Length = 572

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 137/355 (38%), Positives = 196/355 (55%), Gaps = 21/355 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  +       P  + VN DE EPGT KD+  +  +PH  +EG +I +  + A 
Sbjct: 232 FPTGRKWRSVRG--EPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAA 289

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+   RE L   + +    G             I +  GAGAYICGEE++L+
Sbjct: 290 DVYIYLRDEYPISREILAREIAKLPEGG-----------TRIHLRRGAGAYICGEESSLI 338

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR KPPFP  VGL+  PT +NN+E++  V  ++ RGA W+   GR    G 
Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGL 398

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P        +T  ELI+++CGGI  G  +  A +PGG+S   LPA  M 
Sbjct: 399 RSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGISDG-HSFAAYLPGGASGGILPA-SMN 456

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L++ G  +G+AAV+++    D+  A   L  F++ ESCGQCTPCR GT    
Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKAR 516

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            +ME  V       + DLL E+++ +   +IC LG AA+ P+  +IK F  L  E
Sbjct: 517 MLMENGVW------DTDLLGELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565


>gi|163853977|ref|YP_001642020.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|254563947|ref|YP_003071042.1| Tungsten-containing formate dehydrogenase subunit beta
           [Methylobacterium extorquens DM4]
 gi|163665582|gb|ABY32949.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium extorquens PA1]
 gi|254271225|emb|CAX27237.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens DM4]
          Length = 572

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 137/355 (38%), Positives = 196/355 (55%), Gaps = 21/355 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  +       P  + VN DE EPGT KD+  +  +PH  +EG +I +  + A 
Sbjct: 232 FPTGRKWRSVRG--EPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAA 289

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+   RE L   + +    G             I +  GAGAYICGEE++L+
Sbjct: 290 EVYIYLRDEYPISREILAREIAKLPEGG-----------TRIHLRRGAGAYICGEESSLI 338

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR KPPFP  VGL+  PT +NN+E++  V  ++ RGA W+   GR    G 
Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGL 398

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P        +T  ELI+++CGGI  G  +  A +PGG+S   LPA  M 
Sbjct: 399 RSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGISDG-HSFAAYLPGGASGGILPA-SMN 456

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L++ G  +G+AAV+++    D+  A   L  F++ ESCGQCTPCR GT    
Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKAR 516

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            +ME  V       + DLL E+++ +   +IC LG AA+ P+  +IK F  L  E
Sbjct: 517 MLMENGVW------DTDLLGELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565


>gi|294083653|ref|YP_003550410.1| Respiratory-chain NADH dehydrogenase domain-containing protien
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663225|gb|ADE38326.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 572

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 226/397 (56%), Gaps = 25/397 (6%)

Query: 17  GKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            +   D ++ G +  +  +L  EK  + +++ +  + LRG GGAGF TG KW    ++ S
Sbjct: 190 ARRFDDYVADGGYSLLKALLAGEKTAEDVLSVLDNTALRGLGGAGFPTGRKW----RIVS 245

Query: 75  DRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            +P    + VN DE EPGT KDR  + ++PH +IEG +IA+  +G    +IY+R E+   
Sbjct: 246 GQPGPRLMAVNGDEGEPGTFKDRLYLSNDPHRMIEGILIATKVVGIDACYIYMRDEYPEI 305

Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
              L+  +    A+GL           ++ +  GAGAYICGEE+A++ES+EGK+G PR +
Sbjct: 306 IALLKEELAAVEAAGLTDHT-------ELHLRRGAGAYICGEESAMIESIEGKRGLPRHR 358

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPF A  G++  PT VNNVE++  +  I+ +GA W++  G++ + G + +S+SG V  P 
Sbjct: 359 PPFVAEKGIFDRPTLVNNVETLYWIRDIVEQGADWFNNQGKDGHPGPRSYSVSGRVAKPG 418

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG-LKEM 311
            +      T +ELI   CGG+  G  +    +PGG+S   LPA +     +D+ G L E 
Sbjct: 419 VIVAPAGSTVEELIAL-CGGMADGH-SFKGYLPGGASGGILPASK-SDIPLDFGGKLAEE 475

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G  +G+ AV+V+    ++  A   L  F+ HESCGQCTPCR GT   + +M+      + 
Sbjct: 476 GCFVGSHAVVVLSDQDNMWDAATNLLKFFAHESCGQCTPCRNGTEKAVTLMQ------SA 529

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             +++LL E+S  +   +IC LG AA+ P+  ++K+F
Sbjct: 530 NPDVNLLGELSIAMGDASICGLGQAASNPLTSVMKHF 566


>gi|126453004|ref|YP_001067207.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1106a]
 gi|167846783|ref|ZP_02472291.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           B7210]
 gi|242317218|ref|ZP_04816234.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei 1106b]
 gi|126226646|gb|ABN90186.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei 1106a]
 gi|242140457|gb|EES26859.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei 1106b]
          Length = 527

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++ +       F   ESCG+CTPCR G+   +  + R+  G   +R++ 
Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|237813331|ref|YP_002897782.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei MSHR346]
 gi|237505526|gb|ACQ97844.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei MSHR346]
          Length = 521

 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAAAQ-KYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
             IYVR E+     +L  A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETAL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G+V     VE +  +T  EL+    GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-IPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|167903757|ref|ZP_02490962.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei NCTC
           13177]
 gi|254181073|ref|ZP_04887671.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1655]
 gi|184211612|gb|EDU08655.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1655]
          Length = 521

 Score =  236 bits (601), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++ +       F   ESCG+CTPCR G+   +  + R+  G   +R++ 
Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|254195650|ref|ZP_04902077.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13]
 gi|169652396|gb|EDS85089.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13]
          Length = 521

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLEGLTNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++ +       F   ESCG+CTPCR G+   +  + R+  G   +R++ 
Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|86747851|ref|YP_484347.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
 gi|86570879|gb|ABD05436.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
          Length = 518

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 144/392 (36%), Positives = 213/392 (54%), Gaps = 4/392 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +S+ D  + G +  +++ L+   D II+++  SGLRGRGGAGF TG KW  + +    + 
Sbjct: 115 RSIDDYRAHGGYKGLERALKMSSDAIIDDIVKSGLRGRGGAGFPTGTKWRTVAQAGRGQ- 173

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+  NADE + GT  DR +M  +P  +IEG  IA  A+GA   +IY+R E+    E++ 
Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPFMVIEGMTIAGIAVGATRGYIYIRSEYPHAVEAMN 233

Query: 138 AAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           AA++    +G LG +     D  DI V  GAGAYICGEET++LESLEGK+G  R KPP P
Sbjct: 234 AAIEAARRTGYLGDHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GL+G PT +NNV + + VP IL  GA  Y+  G   +RGTK   + G++ +    E 
Sbjct: 294 AHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGRSRGTKPIQLGGNIRHGGLFEV 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  IT  ELI+   GG   G   + AV  GG      P   +     DY+        +G
Sbjct: 354 AFGITLGELIDDIGGGTLSGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGMVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              V+V D + D+ K       F   ESCG+CTPCR G+      +++++ G      I 
Sbjct: 412 HGGVVVFDDTVDMAKQARFAMEFCAIESCGKCTPCRIGSTRGAETVDKIIAGDRPAANIA 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +L ++   ++  ++CALG  A  P+   + +F
Sbjct: 472 VLEDLCNTMKFGSLCALGGLAPIPVLSALAHF 503


>gi|217420419|ref|ZP_03451924.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia
           pseudomallei 576]
 gi|217395831|gb|EEC35848.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia
           pseudomallei 576]
          Length = 521

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARAAGWLGT-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++ +       F   ESCG+CTPCR G+   +  + R+  G   +R++ 
Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|167895370|ref|ZP_02482772.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           7894]
 gi|167919995|ref|ZP_02507086.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           BCC215]
          Length = 521

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 145/410 (35%), Positives = 220/410 (53%), Gaps = 7/410 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAAAQ-KYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETAL 178
             IYVR E+     +L  A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETAL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G+V     VE +  +T  EL+    GG   G     A + GG     LP  Q 
Sbjct: 337 TLPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQW 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 396 D-IPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 455 VETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|126439777|ref|YP_001059919.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 668]
 gi|126219270|gb|ABN82776.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia
           pseudomallei 668]
          Length = 521

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPESQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++ +       F   ESCG+CTPCR G+   +  + R+  G   +R++ 
Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|3724144|emb|CAA11234.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
          Length = 520

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 149/410 (36%), Positives = 220/410 (53%), Gaps = 5/410 (1%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q+R+     G+    SL D  +   +  +++ L      I+ EV  SGLRGRGGA 
Sbjct: 100 FLKQQERLTFARVGITDPLSLDDYRAHEGFAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    S    Y+V NADE + GT  DR +M  +P  LIEG  IA+ A+GA 
Sbjct: 160 FPTGIKWKTVLGAQSAV-KYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAALAVGAE 218

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      L++A+    A+G LG + +  G    + V  GAGAY+CGEETAL
Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG++G  R KPP PA  GL+G PT +NNV S+A V     R A +Y  +G   +RG
Sbjct: 279 LESLEGRRGVVRAKPPLPALQGLFGKPTVINNVISLATVAGESWRAAEYYRDYGMGRSRG 338

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE++  +T  EL+  + GG R G   + AV  GG     LP  + 
Sbjct: 339 TLPFQLAGNIKQGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESRF 397

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+     G  +G   ++V D + D+ KA      F   ESCG+CTPCR G+   
Sbjct: 398 D-VPLDYEAYAAFGGVVGHGGIVVFDETVDMAKAGPYAMEFCAIESCGKCTPCRIGSTRG 456

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + VM+R++ G    + + L+ ++   +   ++CA+G    +P+   +  F
Sbjct: 457 VEVMDRIIAGEQPVKHVALVRDLCDTMLNGSLCAMGGMTPYPVLSALNEF 506


>gi|77464660|ref|YP_354164.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Rhodobacter sphaeroides 2.4.1]
 gi|77389078|gb|ABA80263.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Rhodobacter sphaeroides 2.4.1]
          Length = 509

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 18/396 (4%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L +  + G ++ + + +   R  I+ EV  SGLRGRGGAGF TG+KW  + +  + +  Y
Sbjct: 113 LEEYEAHGGFEGLHRAIAMSRAEILQEVIDSGLRGRGGAGFPTGIKWKTVSEAEAAQ-KY 171

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NADE + GT  DR IM  +P TLIEG  IA  A GA   ++Y+R E+    E +  A
Sbjct: 172 IVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYVYMRSEYPDAVEVMGEA 231

Query: 140 VDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           V    A GLLG +   S   +D++I V  GAGAY+CGEET+LL SLEGK+G  R KPP P
Sbjct: 232 VRIARAHGLLGPSVMGSGRAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLP 289

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  G  G PT VNNV S+A +P I ++GA++Y  FG   +RGT    I+G+V      E 
Sbjct: 290 ALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPLQIAGNVKRGGLFEI 349

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG-- 314
           +  ++  ++++   GG   G   + AV  GG      P      A+ D     E  +G  
Sbjct: 350 AFGMSLGQIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-----ALFDTPFCYEEFAGAE 403

Query: 315 --LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
             +G A ++V D + D++K       F   ESCG+CTPCR G    M  ++R+ +G A  
Sbjct: 404 GLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETVDRIARGDAAA 463

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             I LL ++   ++  ++CALG    +P+   + +F
Sbjct: 464 --IPLLTDLCATMKSGSLCALGGFTPYPVMSALTHF 497


>gi|289523836|ref|ZP_06440690.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502926|gb|EFD24090.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 579

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 158/425 (37%), Positives = 232/425 (54%), Gaps = 13/425 (3%)

Query: 3   TDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
            +Q R+     G +   S+ D ++   ++ +   LE G D II +V  S LRGRGG GF 
Sbjct: 91  ANQHRLVLRRSGHIDPTSIEDYIATDGYEGLALALELGPDEIIRQVTDSYLRGRGGGGFR 150

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           TG KW    K C D    P Y++ N DE +PG   DR +M  +PH++IEG +I ++A+GA
Sbjct: 151 TGYKW----KSCRDAEDFPKYVIANGDEGDPGAFMDRSLMEGDPHSVIEGMIIGAYAVGA 206

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEET 176
              +IYVR E+      L+ A+++    GLLG N  LG  +D DI +  G GA++CGE +
Sbjct: 207 REGYIYVRNEYPLAVRRLEIAIEKAREWGLLGKNI-LGSAFDFDIQICKGGGAFVCGESS 265

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EG  G PR+K       GL+  PT +NNVE+ A VP IL +G  WY   G + N
Sbjct: 266 ALMRSIEGFPGVPRVKYIHATEQGLWDKPTVLNNVETWANVPIILMKGVEWYKTLGTDRN 325

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+F++ G V     VE  M +T  ++I    GG         AV  GG S  C+PA 
Sbjct: 326 HGTKIFALVGKVKNTGLVEVPMGVTLRKIIYDIGGGTLKD-KAFKAVQTGGPSGGCIPAS 384

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +   + D+D L + GS +G+  +IVMD  + ++        F   ESCG+CTPCREG  
Sbjct: 385 LLDLPV-DFDTLVKSGSMMGSGGMIVMDERSCMVDVAKYFIDFLVEESCGKCTPCREGLK 443

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            + +++  L +G    +++ LL +++K +    +C LG  AA P+   +K F    EE +
Sbjct: 444 VLQKLLRDLSEGKGSLKDVALLEDMAKELSKTALCGLGKTAANPVLSTLKYFHEEYEEHV 503

Query: 417 DQYHR 421
           D Y R
Sbjct: 504 DGYCR 508


>gi|167619115|ref|ZP_02387746.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           Bt4]
          Length = 522

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 213/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  +    + +  
Sbjct: 117 SIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAFPAGIKWRTVRDAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YIVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATIGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARSRAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPVP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGTGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++         F   ESCG+CTPCR G+   +  + ++  G   ++++ 
Sbjct: 413 HGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL E+   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRELCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|332559554|ref|ZP_08413876.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Rhodobacter sphaeroides WS8N]
 gi|332277266|gb|EGJ22581.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Rhodobacter sphaeroides WS8N]
          Length = 509

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 149/396 (37%), Positives = 217/396 (54%), Gaps = 18/396 (4%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L +  + G ++ + + +   R  I+ EV  SGLRGRGGAGF TG+KW  + +  + +  Y
Sbjct: 113 LEEYEAHGGFEGLHRAIAMSRAEILQEVIDSGLRGRGGAGFPTGIKWKTVSEAEAAQ-KY 171

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NADE + GT  DR IM  +P TLIEG  IA  A GA   ++Y+R E+    E +  A
Sbjct: 172 IVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYVYMRSEYPDAVEVMGEA 231

Query: 140 VDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           V    A GLLG +   S   +D++I V  GAGAY+CGEET+LL SLEGK+G  R KPP P
Sbjct: 232 VRIARAHGLLGPSVIGSGRAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLP 289

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  G  G PT VNNV S+A +P I ++GA++Y  FG   +RGT    I+G+V      E 
Sbjct: 290 ALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPLQIAGNVKRGGLFEI 349

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG-- 314
           +  ++  ++++   GG   G   + AV  GG      P      A+ D     E  +G  
Sbjct: 350 AFGMSLGQIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-----ALFDTPFCYEEFAGAE 403

Query: 315 --LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
             +G A ++V D + D++K       F   ESCG+CTPCR G    M  ++R+ +G A  
Sbjct: 404 GLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETVDRIARGDAAA 463

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             I LL ++   ++  ++CALG    +P+   + +F
Sbjct: 464 --IPLLTDLCATMKSGSLCALGGFTPYPVMSALTHF 497


>gi|167581037|ref|ZP_02373911.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           TXDOH]
          Length = 522

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 213/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  +    + +  
Sbjct: 117 SIDDYVAHGGLEGLKNALALDGATACETLVESGLRGRGGAAFPAGIKWRTVRDAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATIGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPVP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++         F   ESCG+CTPCR G+   +  + ++  G   ++++ 
Sbjct: 413 HGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL E+   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRELCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|254452717|ref|ZP_05066154.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus
           238]
 gi|198267123|gb|EDY91393.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus
           238]
          Length = 571

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 221/416 (53%), Gaps = 31/416 (7%)

Query: 5   QDRIFTNLYGLQG--KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           QD    + Y   G   +L D    G+W++V              VK SGLRG GGAGF +
Sbjct: 181 QDYEGFDAYAADGGYATLKDLRKNGNWEDVQA-----------SVKESGLRGLGGAGFPS 229

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW F+       P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   F
Sbjct: 230 GTKWGFVRGNVG--PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAETCF 287

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESL 182
           IY+R E+      LQ   DE  A    G   K G+   I +  GAGAYICGEE+A++ES+
Sbjct: 288 IYMRDEY---PAVLQILADEIAALEQAGIVQK-GF---IDLRRGAGAYICGEESAMIESI 340

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G PR +PP+ A VG++  PT V+NVE++  V  I R G    +       +G + +
Sbjct: 341 EGKRGMPRHRPPYVAQVGVFNRPTLVHNVETLLWVARICREGPECLNSTELNGRKGLRSY 400

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+SG V  P         T  ++I+  CGG+  G     A  PGG S   LPA  +    
Sbjct: 401 SVSGRVANPGVYLLPAGSTITDIIDA-CGGMADG-HVFKAYQPGGPSSGLLPA-SIHDVP 457

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+D L+ +G+ +G+AAV+V+  +     A   +  F++ ESCGQCTPCR G    +++M
Sbjct: 458 LDFDTLQPLGTFIGSAAVVVLSEADSARGAALNMLRFFEDESCGQCTPCRVGCEKAVKLM 517

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +      A   +  LL E+S  +   +IC LG AA  PI+ ++K+F   + +  D+
Sbjct: 518 Q------ADTWDQGLLEELSTAMVDASICGLGQAAPNPIRMVLKHFADEVSDGADK 567


>gi|332527763|ref|ZP_08403802.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
 gi|332112159|gb|EGJ12135.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
          Length = 490

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 142/410 (34%), Positives = 221/410 (53%), Gaps = 17/410 (4%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL +  S++D  + G    +        + II  +  SGLRGRGGA F
Sbjct: 89  LQRQQRLTFARAGLTRPLSIADYEAHGGGAGLRAARAMAPEAIIQAIVDSGLRGRGGAAF 148

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +   +   Y+V N DE + GT  DR ++  +P  LIEG  IA+ A+GA  
Sbjct: 149 PAGIKWRTVAQAAGEL-KYVVCNGDEGDSGTYADRMLLEGDPFLLIEGMAIAARAVGASR 207

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            ++YVR E+ R  E    A++   A+G L      G+D++  V  GAG+Y+CGEETA+LE
Sbjct: 208 GYVYVRSEYPRSVEIFGRAIEVARAAGWLD-----GFDME--VRMGAGSYVCGEETAMLE 260

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++G  R KPP PA  GL+G PT +NN+ ++A VPTIL  G ++Y  FG   + GT 
Sbjct: 261 SLEGRRGVVRAKPPLPAIAGLFGRPTVINNLLTLAAVPTILAEGPAYYRDFGVGRSTGTM 320

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI--PGGSSVPCLPAGQM 298
            F ++G++ +P  VE +  +T  EL+    GG   G       +  P GS VP     + 
Sbjct: 321 PFQLAGNLRFPGLVERAFGVTLRELLFDFGGGTASGRPVKAVQVGGPLGSYVP----EEH 376

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ LG   ++V D + D+ +       F   ESCG+CTPCR G+   
Sbjct: 377 WDVPLDYEAYAVVGAVLGHGGLVVHDDTADMARLARYAMAFCAQESCGKCTPCRIGSTRG 436

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + V+++L+ G    R+  LL ++   ++  ++CA+G     P+   + ++
Sbjct: 437 VEVIDKLLAG--DDRQESLLRDLCDTMKHASLCAMGSMTPLPVLSALNHY 484


>gi|83719980|ref|YP_442161.1| formate dehydrogenase subunit beta [Burkholderia thailandensis
           E264]
 gi|257138350|ref|ZP_05586612.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           E264]
 gi|83653805|gb|ABC37868.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           E264]
          Length = 522

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/392 (35%), Positives = 213/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  +    + +  
Sbjct: 117 SVDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAFPAGIKWRTVRDAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YIVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATIGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARSRAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPVP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGTGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++         F   ESCG+CTPCR G+   +  + ++  G   ++++ 
Sbjct: 413 HGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL E+   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRELCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|91975104|ref|YP_567763.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5]
 gi|91681560|gb|ABE37862.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5]
          Length = 518

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 145/392 (36%), Positives = 214/392 (54%), Gaps = 4/392 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +S+ D  + G +  ++  L    D II++V  SGLRGRGGAGF TG KW  + +    + 
Sbjct: 115 RSIDDYRAHGGYRGLEHALRMSSDAIIDDVVKSGLRGRGGAGFPTGTKWRTVAQAGRGQ- 173

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+  NADE + GT  DR +M  +P  +IEG  IA  A+GA   +IY+R E+    E++ 
Sbjct: 174 KYICCNADEGDSGTFADRMLMEGDPFMVIEGMTIAGIAVGATKGYIYIRSEYPHAVEAMN 233

Query: 138 AAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           AA++    +G LG +     D  DI V  GAGAYICGEET++LESLEGK+G  R KPP P
Sbjct: 234 AAIEAARRTGYLGDHICHSTDSFDIEVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLP 293

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ GL+G P+ +NNV + + VP IL  GA  Y+  G   +RGTK   + G+V +    E 
Sbjct: 294 AHKGLFGRPSVINNVLTFSAVPYILDGGAQAYADCGMGRSRGTKPIQLGGNVKHGGLFEV 353

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  IT  ELI++  GG   G   + AV  GG      P   +     DY+        +G
Sbjct: 354 AFGITLGELIDEIGGGTLSGR-PVRAVQVGGPLGAYFPRA-LFDTPFDYEAFAARSGMVG 411

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              V+V D + D+ K       F   ESCG+CTPCR G+     ++++++ G     +I 
Sbjct: 412 HGGVVVFDDTVDMAKQARFAMEFCAIESCGKCTPCRIGSTRGAEMVDKIIAGDKPAADIA 471

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +L ++   ++  ++CALG  A  P+   + +F
Sbjct: 472 VLEDLCNTMKFGSLCALGGLAPIPVLSALTHF 503


>gi|28207554|gb|AAO32145.1| NAD-linked formate dehydrogenase beta subunit [Methylobacterium
           extorquens AM1]
          Length = 519

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 138/391 (35%), Positives = 209/391 (53%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D  + G +  ++  L+     I+ +V+ SGLRGRGGAGF  G+KW+ +    SD+  
Sbjct: 117 SVEDYRAHGGYRGLEAALKLDAKGIVAQVRDSGLRGRGGAGFPAGIKWNTVMLAQSDQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA   +IY R E+ +  ++L+ 
Sbjct: 176 YVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGATRGYIYCRSEYPQSFKTLRD 235

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G+LG N    G    + V  GAGAYICGEET+LLESLEGK+G  R KPP PA
Sbjct: 236 AIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G  G PT VNNV +   VP IL  GA  Y+ +G   + GT    ++G++     +E +
Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLGTLPIQLAGNIRQGGLIEYA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  ++IE   GG     D  +  +  G  +       +    +DY+ +      +G 
Sbjct: 356 FGITIRQVIEDFGGGT--ASDRPVRAVQVGGPLGAYFPDDLLDTPLDYEAMAAKKGLVGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+ K       F   ESCG+CTPCR G    +  M++++ GI  +  + L
Sbjct: 414 GGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRGVETMDKVISGIRPEANLKL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++ + +   ++CA+G     P+   I NF
Sbjct: 474 VEDLCEIMTDGSLCAMGGLTPMPVMSAITNF 504


>gi|188579566|ref|YP_001923011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium populi BJ001]
 gi|179343064|gb|ACB78476.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium populi BJ001]
          Length = 572

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/355 (38%), Positives = 196/355 (55%), Gaps = 21/355 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  +       P  + VN DE EPGT KD+  +  +PH  +EG +I +  + A 
Sbjct: 232 FPTGRKWRSVRG--EPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAT 289

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+   RE L   + +    G             I +  GAGAYICGEE++L+
Sbjct: 290 DVYIYLRDEYPISREILTREIAKLPEGG-----------TRIHLRRGAGAYICGEESSLI 338

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR KPPFP  VGL+  PT +NN+E++  V  ++ RGA W+   GR    G 
Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGADWWKSHGRNGRVGL 398

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P        +T  ELI+++CGG+  G  +  A +PGG+S   LPA  M 
Sbjct: 399 RSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGMSDG-HSFAAYLPGGASGGILPA-SMN 456

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L++ G  +G+AAV+V+    D+  A   L  F++ ESCGQCTPCR GT    
Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVVLSDQDDVRGAALNLMRFFEDESCGQCTPCRSGTQKAR 516

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            +ME  V       + +LL E+++ +   +IC LG AA+ P+  +IK F  L  E
Sbjct: 517 MLMENGVW------DTELLGELAQCMRDASICGLGQAASNPVSSVIKYFPDLFPE 565


>gi|167563645|ref|ZP_02356561.1| formate dehydrogenase, beta subunit [Burkholderia oklahomensis
           EO147]
          Length = 522

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAFPAGIKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA   ++YVR E+     +L  
Sbjct: 176 YVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVATGATIGYVYVRSEYPHAIATLDD 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+     +G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARDAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALAGLFGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++ +       F   ESCG+CTPCR G+   +  + ++  G   ++++ 
Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|38637753|ref|NP_942727.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia
           eutropha H16]
 gi|123467|sp|P22317|HOXF_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha
 gi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Ralstonia eutropha H16]
 gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia
           eutropha H16]
          Length = 602

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 135/394 (34%), Positives = 211/394 (53%), Gaps = 21/394 (5%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD---RPHYLVVNADESE 88
           +D+ L    + +I  +  S LRGRGGAGFSTG+KW    ++C D      Y++ NADE E
Sbjct: 197 LDQCLLLKPEQVIETIVDSRLRGRGGAGFSTGLKW----RLCRDAESEQKYVICNADEGE 252

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR ++   P  +  G VIA++AIG     +Y+RGE+   ++ L+  + E    GL
Sbjct: 253 PGTFKDRVLLTRAPKKVFVGMVIAAYAIGCRKGIVYLRGEYFYLKDYLERQLQELREDGL 312

Query: 149 LGS--NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG     + G+D DI +  GAGAYICG+E+AL+ES EGK+G PR+KPPFP   G  G PT
Sbjct: 313 LGRAIGGRAGFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPT 372

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
           +VNNVE+ A V  I+  GA W+   G  ++ GT+L S++G  + P   E    +T +E++
Sbjct: 373 SVNNVETFAAVSRIMEEGADWFRAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVL 432

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
                    G  +  AV   G S  C+   +     + Y+ L   G      A  + +  
Sbjct: 433 AMV------GARDARAVQISGPSGECVSVAKDGERKLAYEDLSCNG------AFTIFNCK 480

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
            D+++ +     F+  ESCG C PCR G   + R +E ++ G A ++++D +      + 
Sbjct: 481 RDLLEIVRDHMQFFVEESCGICVPCRAGNVDLHRKVEWVIAGKACQKDLDDMVSWGALVR 540

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             + C LG  +  PI   ++ F  + + ++ ++ 
Sbjct: 541 RTSRCGLGATSPKPILTTLEKFPEIYQNKLVRHE 574


>gi|167570807|ref|ZP_02363681.1| formate dehydrogenase, beta subunit [Burkholderia oklahomensis
           C6786]
          Length = 522

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 214/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAFPAGIKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA   ++YVR E+     +L  
Sbjct: 176 YVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVATGATIGYVYVRSEYPHAIATLDD 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+     +G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARDAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALAGLFGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++ +       F   ESCG+CTPCR G+   +  + ++  G   ++++ 
Sbjct: 413 HGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|94310464|ref|YP_583674.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Cupriavidus metallidurans CH34]
 gi|93354316|gb|ABF08405.1| NAD-reducing hydrogenase diaphorase moiety large subunit
           [Cupriavidus metallidurans CH34]
          Length = 602

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/387 (34%), Positives = 206/387 (53%), Gaps = 15/387 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +D  L    + +I+E+  S LRGRGGAGF+TG+KW    +  SD   Y++ NADE EPGT
Sbjct: 197 LDHCLTLRPEQVIDEIIESKLRGRGGAGFTTGLKWQLCRRALSDT-KYVICNADEGEPGT 255

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR ++   P  +  G  IA+ AIG     +Y+R E+   ++ L+  + +    GLLG 
Sbjct: 256 FKDRALLTRSPKEVFIGMAIAAHAIGCRHGIVYLRAEYFYLKDYLERQLQQLRDDGLLGR 315

Query: 152 --NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
               +  +D DI +  GAGAYICG+E+AL+ES EGK+G PR+KPPFP   G  G PT VN
Sbjct: 316 AIGVRRDFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPTCVN 375

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE+ A V  I+  GA W+S  G  ++ GT+L S++G  + P   E    +T +E++   
Sbjct: 376 NVETFAAVSRIMEEGADWFSAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVLAMV 435

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
                 G     AV   G S  C+   +     + Y+ L   G      A  + +R+ D+
Sbjct: 436 ------GAKEARAVQISGPSGECVSVEKDGERRLAYEDLSCNG------AFTIFNRNRDL 483

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           +  +     F+  ESCG C PCR G   + R +E ++ G A ++++D +      +   +
Sbjct: 484 LDIVKDYMQFFVDESCGICVPCRAGNVDLHRKVEWVIAGKACQKDLDDMVSWGALVRKTS 543

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERI 416
            C LG  +  PI   ++ F  + ++++
Sbjct: 544 RCGLGATSPKPILTTLEKFPEIYQDKL 570


>gi|189485526|ref|YP_001956467.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287485|dbj|BAG14006.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 623

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 209/369 (56%), Gaps = 9/369 (2%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G KW+      + +  Y++ N DE +PG   DR +M   PH +IEG VIA+ A GA 
Sbjct: 193 FPVGKKWNLARNQTASK-KYIICNGDEGDPGAFMDRSVMEGNPHGIIEGLVIAAKATGAD 251

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             ++YVR E+    + ++ AV +     +LG N    G++  + V  GAGA++CGEE AL
Sbjct: 252 EGYVYVRTEYALAVKRMKKAVKDASDIKVLGKNIFGSGHNFTLHVMEGAGAFVCGEEIAL 311

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G P  KPPFPA  GL+G PTT+NNVE++A +P I+  GA  +   G  ++ G
Sbjct: 312 IASVEGKRGMPLPKPPFPAQSGLWGKPTTINNVETLATIPMIINYGADVFRETGTVSSPG 371

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW-----DNLLAVIPGGSSVPCL 293
           TK F+++GHV     +E  +  T  ++I    GG+  G       N  AV  GG S  CL
Sbjct: 372 TKTFALTGHVLNTGLIEVPLGSTLRQIIFDISGGVTDGKGSVKDGNFKAVQIGGPSGGCL 431

Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353
               +  + +D+D LK++G+ +G+  ++VM++S  ++        F ++ESCG+C  CRE
Sbjct: 432 TEEHLDLS-LDFDSLKKVGAMVGSGGLVVMNKSICMVNIAKFFMQFTQNESCGKCVLCRE 490

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           GT  M+ ++  + +G A +  I LL E+++ ++  ++C LG  A  P+   +K FR   +
Sbjct: 491 GTKQMLLMLSDITEGKADEDTISLLEELARAVQIGSLCGLGKTAPNPVLSTLKYFRNEYD 550

Query: 414 ERIDQYHRC 422
             + +  RC
Sbjct: 551 AHVKE-KRC 558


>gi|220925074|ref|YP_002500376.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
 gi|219949681|gb|ACL60073.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 572

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/353 (39%), Positives = 196/353 (55%), Gaps = 21/353 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  +       P  + VN DE EPGT KD+  +  +PH  +EG +I +  + A 
Sbjct: 232 FPTGRKWRSV--RGEPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGTLIGAHVVEAA 289

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             ++Y+R E+   R  L   + +    G             I +  GAGAYICGEE++++
Sbjct: 290 EIYLYIRDEYPIARAILARELAKLPPGG-----------PRIHLRRGAGAYICGEESSMI 338

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR KPPFP  VGL+G PT +NNVE++  V  ++ +GA+W+   GR    G 
Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFGRPTLINNVETLYWVRDLIEKGAAWWKSHGRNGRTGL 398

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P        +T  ELI++ CGG+  G     A +PGG+S   LPA  M 
Sbjct: 399 RSYSVSGRVAAPGVKLAPAGLTIRELIDEFCGGMAAG-HRFAAYLPGGASGGILPAA-MD 456

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L++ G  +G+AAV+V+    D+  A   L  F++ ESCGQCTPCR GT    
Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVVLSDQDDLRGAALNLMRFFEDESCGQCTPCRVGTRKAR 516

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           R+ME+ V       + DLL E+S+ +   +IC LG AAA P+  LIK F  L 
Sbjct: 517 RLMEQGVW------DTDLLGELSQCMRDASICGLGQAAANPVTSLIKYFPDLF 563


>gi|167837458|ref|ZP_02464341.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           MSMB43]
          Length = 522

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 140/392 (35%), Positives = 213/392 (54%), Gaps = 6/392 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G    +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLAGLKNALALDGAVACETLVESGLRGRGGAAFPAGIKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+     +L  
Sbjct: 176 YIVCNADEGDSGTFSDRLLMESDPYCLIEGMIIAGVATGATVGHIYVRSEYPHAIAALGE 235

Query: 139 AVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+    A+G LG+ S LG  +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP P
Sbjct: 236 AIARARAAGWLGA-SVLGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLP 294

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GL+G PT +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE 
Sbjct: 295 ALSGLFGQPTVINNVITLATVPVIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVEL 354

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +  +T  EL+    GG   G     A + GG     LP  Q     +DY+    +G+ +G
Sbjct: 355 AFGVTLRELLFDFGGGTASGRPARAAQV-GGPLGTYLPDSQWD-IPLDYEAYAAVGAVVG 412

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +++ D ++++         F   ESCG+CTPCR G+   +  + ++  G   ++++ 
Sbjct: 413 HGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGVETIAKIRAGDTSEKQVR 472

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           LL ++   +   ++CA+G    +P+   + +F
Sbjct: 473 LLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 504


>gi|126463500|ref|YP_001044614.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029]
 gi|126105164|gb|ABN77842.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029]
          Length = 509

 Score =  234 bits (596), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/396 (37%), Positives = 216/396 (54%), Gaps = 18/396 (4%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L +  + G ++ + + +   R  I+ EV  SGLRGRGGAGF TG+KW  + +  + +  Y
Sbjct: 113 LEEYEAHGGFEGLHRAIAMSRTEILQEVIDSGLRGRGGAGFPTGIKWKTVSEAEAAQ-KY 171

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NADE + GT  DR IM  +P TLIEG  IA  A GA   ++Y+R E+    + +  A
Sbjct: 172 IVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYVYMRSEYPDAVQVMGEA 231

Query: 140 VDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           V    A GLLG +   S   +D++I V  GAGAY+CGEET+LL SLEGK+G  R KPP P
Sbjct: 232 VRIARAHGLLGPSVMGSGRAFDMEIRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPLP 289

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  G  G PT VNNV S+A +P I ++GA++Y  FG   +RGT    I+G+V      E 
Sbjct: 290 ALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPLQIAGNVKRGGLFEI 349

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG-- 314
           +  ++  ++++   GG   G   + AV  GG      P      A+ D     E  +G  
Sbjct: 350 AFGMSLGQIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-----ALFDTPFCYEEFAGAE 403

Query: 315 --LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
             +G A ++V D + D++K       F   ESCG+CTPCR G    M  ++R+ +G    
Sbjct: 404 GLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETVDRIARG--DT 461

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             I LL ++   ++  ++CALG    +P+   + +F
Sbjct: 462 AAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHF 497


>gi|170751378|ref|YP_001757638.1| NADH dehydrogenase (quinone) [Methylobacterium radiotolerans JCM
           2831]
 gi|170657900|gb|ACB26955.1| NADH dehydrogenase (quinone) [Methylobacterium radiotolerans JCM
           2831]
          Length = 519

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 140/391 (35%), Positives = 209/391 (53%), Gaps = 4/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D  + G +  ++  L+     I+  V+ SGLRGRGGAGF  G+KW+ +    +D+  
Sbjct: 117 SVDDYRAHGGYRGLEAALKLDAAGIVAAVRESGLRGRGGAGFPAGIKWNTVMLAEADQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR +M  +P  LIEG  IA  A GA   +IY+R E+ +   +L+ 
Sbjct: 176 YVVCNADEGDSGTFADRMMMEGDPFNLIEGMTIAGVATGATRGYIYLRSEYPQAFATLKE 235

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+     +G+LG N    G    + V  GAGAYICGEET+LLESLEGK+G  R KPP PA
Sbjct: 236 AIANGVTAGVLGDNILGSGKSFHLDVRLGAGAYICGEETSLLESLEGKRGIVRAKPPIPA 295

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G  G PT VNNV +   VP IL  GA  Y+ +G   + GT    ++G++ +   +E +
Sbjct: 296 LKGFLGKPTLVNNVMTFTAVPWILENGARAYADYGMGRSLGTLPIQLAGNIKHGGLIEMA 355

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  ++IE   GG R G   + AV  GG      P   +    +DY+ +      +G 
Sbjct: 356 FGITLRQVIEDFGGGTRSGRP-VRAVQVGGPLGAYFP-DHLLDTPLDYEAMAAKKGLVGH 413

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D + D+         F   ESCG+CTPCR G    +  M++++ GI     + L
Sbjct: 414 GGIVVFDDTVDMAAQARFAFEFCATESCGKCTPCRIGATRGVETMDKVIAGIRPDANLKL 473

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + ++ + +   ++CA+G     P+   I +F
Sbjct: 474 VEDLCEVMTDGSLCAMGGLTPMPVMSAITHF 504


>gi|220919682|ref|YP_002494985.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
 gi|219952102|gb|ACL62493.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 567

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 138/353 (39%), Positives = 196/353 (55%), Gaps = 21/353 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  +       P  + VN DE EPGT KD+  +  +PH  +EG +I +  + A 
Sbjct: 227 FPTGRKWRSV--RGEPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGTLIGAHVVEAA 284

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             ++Y+R E+   R  L   + +    G             I +  GAGAYICGEE++++
Sbjct: 285 EIYLYIRDEYPIARAILARELAKLPPGG-----------PRIHLRRGAGAYICGEESSMI 333

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR KPPFP  VGL+G PT +NNVE++  V  ++ +GA+W+   GR    G 
Sbjct: 334 ESLEGKRGLPRHKPPFPFQVGLFGRPTLINNVETLYWVRDLIEKGAAWWKSHGRNGRTGL 393

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P        +T  ELI++ CGG+  G     A +PGG+S   LPA  M 
Sbjct: 394 RSYSVSGRVAAPGVKLAPAGLTIRELIDEFCGGMAAG-HRFAAYLPGGASGGILPAA-MD 451

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L++ G  +G+AAV+V+    D+  A   L  F++ ESCGQCTPCR GT    
Sbjct: 452 DIPLDFGTLEKYGCFIGSAAVVVLSDQDDLRGAALNLMRFFEDESCGQCTPCRVGTRKAR 511

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           R+ME+ V       + DLL E+S+ +   +IC LG AAA P+  LIK F  L 
Sbjct: 512 RLMEQGVW------DTDLLGELSQCMRDASICGLGQAAANPVTSLIKYFPDLF 558


>gi|154495354|ref|ZP_02034359.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC
           43184]
 gi|154085278|gb|EDN84323.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC
           43184]
          Length = 561

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 211/376 (56%), Gaps = 6/376 (1%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + E   + +I E+  SGLRGRGG GF TG+KW    KV + +  Y+V NADE +PG   D
Sbjct: 111 LTEMTPESVIKEIMDSGLRGRGGGGFPTGLKWQITRKVKAPQ-KYVVCNADEGDPGAFMD 169

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R I+  +PH+++E   I  +  GA    +Y+R E+    E L+ A+ +    GLLG N  
Sbjct: 170 RSILEGDPHSIVEAMAINGYCTGATKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIF 229

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              +  DI + +GAGA++CGEETAL+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+
Sbjct: 230 GTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPFPSEQGYKGCPTNVNNVET 289

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A VP IL +GA W+S  G E ++GTK+F+++G VN    +E  M  T  E +    GG 
Sbjct: 290 YANVPVILLKGAEWFSSIGTEKSKGTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGG 348

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                   AV  GG S  CL    +   I DYD L   GS +G+  +IVMD   D + A+
Sbjct: 349 IKDGKKFKAVQTGGPSGGCLTEKHLDLPI-DYDNLLAAGSMMGSGGMIVMDED-DCMVAM 406

Query: 334 WRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
            +  + F   ESCG+C PCR G   +  +++++  G     +++ L  ++  I+   +C 
Sbjct: 407 AKFYLDFTVEESCGKCAPCRIGNKRLHEMLQKITSGNGTIEDLERLRNLAGVIKDTALCG 466

Query: 393 LGDAAAWPIQGLIKNF 408
           LG  +  P+   + NF
Sbjct: 467 LGQTSPNPVLSTMDNF 482


>gi|221640574|ref|YP_002526836.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131]
 gi|221161355|gb|ACM02335.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131]
          Length = 509

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 147/394 (37%), Positives = 213/394 (54%), Gaps = 14/394 (3%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L +  + G ++ + + +   R  I+ EV  SGLRGRGGAGF TG+KW  + +  + +  Y
Sbjct: 113 LEEYEAHGGFEGLHRAIAMSRTEILQEVIDSGLRGRGGAGFPTGIKWKTVSEAEAAQ-KY 171

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NADE + GT  DR IM  +P TLIEG  IA  A GA   ++Y+R E+    E +  A
Sbjct: 172 IVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYVYMRSEYPDAVEVMGEA 231

Query: 140 VDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           V    A GLLG S    G   D+ V  GAGAY+CGEET+LL SLEGK+G  R KPP PA 
Sbjct: 232 VRIARAHGLLGPSVMGSGRAFDMEVRVGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPAL 291

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            G  G PT VNNV S+A +P I ++GA++Y  FG   +RGT    I+G+V      E + 
Sbjct: 292 EGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPLQIAGNVKRGGLFEIAF 351

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG---- 314
            ++  ++++   GG   G   + AV  GG      P      A+ D     E  +G    
Sbjct: 352 GMSLGQIVDDIAGGTASG-RPVKAVQVGGPLGAYFPR-----ALFDTPFCYEEFAGAEGL 405

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G A ++V D + D++K       F   ESCG+CTPCR G    +  ++R+ +G      
Sbjct: 406 VGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGIETVDRIARG--DTAA 463

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           I LL ++   ++  ++CALG    +P+   + +F
Sbjct: 464 IPLLTDLCATMKSGSLCALGGFTPYPVMSALTHF 497


>gi|239815993|ref|YP_002944903.1| NADH dehydrogenase (quinone) [Variovorax paradoxus S110]
 gi|239802570|gb|ACS19637.1| NADH dehydrogenase (quinone) [Variovorax paradoxus S110]
          Length = 519

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 141/410 (34%), Positives = 222/410 (54%), Gaps = 7/410 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      S++D  +   +  + + L      I+ +V  SGLRGRGGA F
Sbjct: 100 LKKQERLTFARMGVTDPVSVADYEAHEGFAGLRRALTLAPAEIVQQVLDSGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
             G+KW  +  + ++ P  Y+V NADE + GT  DR  M  +P  L+EG  IA  A GA 
Sbjct: 160 PAGIKWKTV--LAAEAPQKYIVCNADEGDSGTFSDRMTMEGDPLMLVEGMAIAGIATGAT 217

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVR E+     +L  A+     +G LG +    G+   + V   AGAY+CGEETAL
Sbjct: 218 EGYIYVRSEYPHAIATLNEAIRHAEQAGFLGDDILGSGHAFRLTVRKAAGAYVCGEETAL 277

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG++G  R KPP PA  GL+G PT +NNV ++A VP IL RGA +Y  +G   +RG
Sbjct: 278 LESLEGRRGIVRAKPPLPALQGLFGQPTVINNVITLASVPLILARGADFYKHYGMGRSRG 337

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE++  ++  EL+    GG   G   + AV  GG     +P  Q 
Sbjct: 338 TLPFQLAGNIRHGGLVEKAFGLSLRELLYDFGGGSASGRP-IKAVQVGGPLGAYVPESQW 396

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   ++V D + D+ +       F   ESCG+CTPCR G+   
Sbjct: 397 D-LPLDYEAYAAVGAVVGHGGIVVHDDTADMSQLARYAMEFCAIESCGKCTPCRIGSTRG 455

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + V++++     + +++ LL ++   +   ++CA+G    +P+   I ++
Sbjct: 456 VEVIDKITSNQNRPQQVILLRDLCDTMLHGSLCAMGGMTPYPVLSAINHY 505


>gi|318041123|ref|ZP_07973079.1| NADH dehydrogenase (quinone) [Synechococcus sp. CB0101]
          Length = 521

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 146/394 (37%), Positives = 231/394 (58%), Gaps = 12/394 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRD-WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +SL+D+++ G W  + ++LE+     +I  V+ SGLRGRGGAG+ TG+KW+ +  +   +
Sbjct: 124 ESLADALAAGAWQQLPRVLEQNDPPAVIEIVRRSGLRGRGGAGYPTGLKWATVAAMPGSQ 183

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
              +V NADE +PG   DR +M  +PHTL+EG  IA+FA+GA   FIYVR E+    E L
Sbjct: 184 -KVVVCNADEGDPGAFMDRTLMEGDPHTLLEGMAIAAFAVGAQQGFIYVRAEYPLAIERL 242

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+      G LG      G+  +I +  GAGAY+CGEETAL+ S+EG++G PR +PP+
Sbjct: 243 RTAISAAEQQGWLGRGIGGSGFSFEIELRVGAGAYVCGEETALIHSIEGRRGVPRPRPPY 302

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G++G PT +NNVE+   +P +L  G   Y         GTK+FS++GHV     +E
Sbjct: 303 PAEHGVFGLPTLINNVETFGNIPALLELGVEAY-------GTGTKVFSLTGHVQRSGVLE 355

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  +   ++E   GG   G   + AV  GG S  C+PA  +   + DYD LK +G+ +
Sbjct: 356 VPMGTSLRTIVETMGGGAPQG-RQIKAVQTGGPSGGCVPASALDSPV-DYDSLKALGTIM 413

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  ++V+D +T+++        F + ESCG+C PCR GT  +  ++ +L++   Q  ++
Sbjct: 414 GSGGMVVLDDTTNMVDIAAFFIAFSREESCGKCIPCRSGTVQLEMLLRKLLERRGQVADL 473

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           + L  +   +   ++C LG +A  P+   +++FR
Sbjct: 474 EQLEALCHTVADASLCGLGQSAPKPVLSTLRHFR 507


>gi|294678552|ref|YP_003579167.1| NAD-dependent formate dehydrogenase subunit beta [Rhodobacter
           capsulatus SB 1003]
 gi|294477372|gb|ADE86760.1| NAD-dependent formate dehydrogenase, beta subunit [Rhodobacter
           capsulatus SB 1003]
          Length = 500

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 146/390 (37%), Positives = 213/390 (54%), Gaps = 12/390 (3%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL+   +   W  + K L+     ++ EV ASGLRGRGGAGF TG+KW  +    +D+  
Sbjct: 111 SLAQFAAAEGWAGLRKALKMTPAEVVEEVLASGLRGRGGAGFPTGIKWRTVAAAQADQ-K 169

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V N DE + G+  DR ++  +P  L+EG  IA  A+GA   ++Y+R E+      ++A
Sbjct: 170 YIVCNVDEGDSGSFADRMLIEGDPFCLVEGMAIAGHAVGATRGYVYIRSEYPDAIAVMRA 229

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+    A   L   ++ G+++++ V  GAGAY+CGEET+LL SLEGK+G  R KPP PA 
Sbjct: 230 AI--AMAKPFL---AEAGFEMEVRV--GAGAYVCGEETSLLNSLEGKRGTVRAKPPLPAL 282

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT VNN+ S+A VP I+  GA  Y  FG + +RGT    I G+V      E   
Sbjct: 283 KGLFGKPTVVNNLLSLAAVPWIIAHGAKAYESFGMDRSRGTIPLQIGGNVKRGGLFETGF 342

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  EL+E  CGG   G   + AV  GG      P          Y+     G  +G A
Sbjct: 343 GITLGELVEDICGGTASG-RPVKAVQVGGPLGAYHPVSDYHLPFC-YEQFAGQGGLVGHA 400

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            ++V D + D++K       F   ESCG CTPCR G    + V++R+  G A    + LL
Sbjct: 401 GLVVHDDTADMLKLARFAMEFCAIESCGTCTPCRIGAVRGVEVIDRIAAGDASA--MPLL 458

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            ++ + ++  ++CALG    +P+Q  I++F
Sbjct: 459 DDLCQTMKLGSLCALGGFTPYPVQSAIRHF 488


>gi|118589441|ref|ZP_01546847.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614]
 gi|118438141|gb|EAV44776.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614]
          Length = 540

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 199/349 (57%), Gaps = 17/349 (4%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  +  + +  P YL +N DE EPGT KDR  +  +PH L+EG +IA+ A+ A 
Sbjct: 203 FPTGTKWKIVHDLPA--PKYLTINGDEGEPGTFKDRVHLERDPHRLLEGALIAAHAMSAA 260

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             ++Y+R E+    E L+  ++    +G++ +       +DI +  GAGAYICGEE+A++
Sbjct: 261 RIYLYMRDEYPAVLEILRTEIEALRQAGIITT-------IDIELRRGAGAYICGEESAMI 313

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR +PPF A VGL+  PT  +NVE++  +  I+ +G  W++  GR  ++G 
Sbjct: 314 ESIEGKRGLPRHRPPFIAQVGLFDRPTLNHNVETLFWIRDIVEKGPEWFASQGRRGHKGY 373

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + FS+SG V  P        IT +EL+ + CGG+  G       +PGG+S   LPA  + 
Sbjct: 374 RSFSVSGRVKEPGVKLAPAGITMNELLVEFCGGMEDGH-AFKGYLPGGASGGILPA-SLA 431

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L + G  +G+ A++V     D+      L  F+KHESCGQCTPCR GT  M 
Sbjct: 432 DEPLDFGTLDKYGCFIGSHAIVVFSDQDDMRDVALNLMRFFKHESCGQCTPCRSGTEKME 491

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            +   L  G   K +I  L  V ++    +IC LG AA+ P+  ++K F
Sbjct: 492 HL---LAAGDWDKAKIADLDAVMRSA---SICGLGQAASNPVTSVLKFF 534


>gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 633

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 144/398 (36%), Positives = 227/398 (57%), Gaps = 9/398 (2%)

Query: 18  KSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S+ + +  G ++   K  L+   + I  E+  SGLRGRGG GF TG KW    +   D+
Sbjct: 154 ESIDEYLRNGGYEAAKKAFLQMSPEAICTEISESGLRGRGGGGFPTGRKWEAARRQAGDK 213

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ NADE +PG   +R +M   PH++IEG +IA+ AIGA    +YVR E+    E +
Sbjct: 214 -KYVICNADEGDPGAFMNRSVMEGNPHSVIEGLMIAARAIGADETLVYVRAEYPLAVERM 272

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + AV +  A G+LG N    G ++   +  GAGA++CGEETA++ S+EG++G PR KPPF
Sbjct: 273 RRAVKDATARGILGENVFGSGLNISCEIMEGAGAFVCGEETAMIASIEGQRGMPRPKPPF 332

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT +NNVE++A    I+R GA  +   G   + GTK F+++GHV     +E
Sbjct: 333 PAQSGLWGKPTIINNVETLAHAVRIVREGAIRFRQLGTPGSPGTKTFALTGHVANTGLIE 392

Query: 256 ESMSITFDELIEKHCGGIR---GGWD--NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
                T  E++    GG+    G  D     AV  GG S  CL    +    MD+D L+ 
Sbjct: 393 VPFGTTLREIVHNIGGGVTKSDGSIDPTGFKAVQIGGPSGGCLTQEHLD-LPMDFDSLRT 451

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           +G+ +G+  ++ M++ T ++        F + ESCG+C  CREGT  M+ +M+ +++G A
Sbjct: 452 VGAMVGSGGLVAMNQDTCMVSVARFFMEFTQRESCGKCVLCREGTRQMLALMDDIIEGRA 511

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            +  + LL E++  ++  ++C LG  A  P+   +++F
Sbjct: 512 DETTLPLLRELAVAVQKGSLCGLGKTAPNPVLSTLRHF 549


>gi|192973053|gb|ACF06952.1| formate dehydrogenase beta subunit [uncultured Roseobacter sp.]
          Length = 561

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 208/375 (55%), Gaps = 20/375 (5%)

Query: 36  LEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           L  G DW  +  ++K SGLRG GGAGF +G KW F+       P YL VN DE EPGT K
Sbjct: 201 LRAGGDWQEVQAQIKQSGLRGLGGAGFPSGTKWGFVRSNAG--PRYLAVNGDEGEPGTFK 258

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           DR  +   PH  +EG +IA++A+ A  +FIY+R E+      L   +     +GL+ +  
Sbjct: 259 DRYYLERTPHLFLEGMLIAAWAVEAETSFIYMRDEYPAVLHILAQEIAALEGAGLVPA-- 316

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             GY   I +  GAGAYICGEE+A++ES+EGK+G PR +PPF A VG++  PT V+NVE+
Sbjct: 317 --GY---IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAAVGIHNRPTLVHNVET 371

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           +  V  ++R G    +        G + +S+SG V  P         T  ++I   CGG+
Sbjct: 372 LLWVARVVREGPECLNAVEHNGRTGLRSYSVSGRVKNPGVHLLPAGSTITDIIAA-CGGM 430

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
             G     A  PGG S   LPA  +    +D+D L+ +G+ +G+AAV+V+        A 
Sbjct: 431 LEG-HIFSAYQPGGPSSGLLPA-SIHDVPLDFDTLQPLGTFIGSAAVVVLSDQDSPRAAA 488

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
             +  F++ ESCGQCTPCR G    +++M+      A+  +  LL +++  +   +IC L
Sbjct: 489 LNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------AETWDQPLLEDLTTAMVEASICGL 542

Query: 394 GDAAAWPIQGLIKNF 408
           G AA  PI+ +IK F
Sbjct: 543 GQAAPNPIKSVIKYF 557


>gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 634

 Score =  233 bits (593), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 148/404 (36%), Positives = 233/404 (57%), Gaps = 11/404 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +++ D++  G +  + K+L    ++ +I EV  SGLRGRGG GF TG KW    +   D 
Sbjct: 161 ENMEDALGVGAYTALGKVLTTMTQEEVIKEVSESGLRGRGGGGFPTGRKWEAARRANGDV 220

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ NADE +PG   DR I+  +P+ ++E   I  +AIGA   +IY+R E+      L
Sbjct: 221 -KYVICNADEGDPGAFMDRAILEGDPNLVLEAMAICGYAIGASKGYIYIRAEYPLAVHRL 279

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +    GLLGSN    G++ DI + +GAGA++CGE TAL+ S+EG +G+P +KPP 
Sbjct: 280 KVALKQAKDIGLLGSNILNTGFNFDIEIKYGAGAFVCGEATALIHSIEGLRGEPTMKPPR 339

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            +  GL+  PT VNNVE+ A V  I+  GA WYS  G E + GTK+F+++G++N    VE
Sbjct: 340 TSEKGLWQRPTCVNNVETFANVSQIINNGAKWYSSIGAEKSAGTKVFALAGNINNVGLVE 399

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M +   +++ +  GGI      L A+  GG S  C+P   +   I +YD L  +GS +
Sbjct: 400 IPMGMPLRDIVYEIGGGIINN-KALKAIQTGGPSGGCIPVEYLDLPI-EYDTLTSIGSMM 457

Query: 316 GTAAVIVMDRS---TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           G+  +IVMD      DI K     SV    ESCG+CTPCR G   ++ +++++  G A +
Sbjct: 458 GSGGMIVMDEDNCMVDIAKFYLEFSV---DESCGKCTPCRIGNKRILELLKKITDGTAVE 514

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +++ + E+ + +   ++C LG+AA  P+   +K F    +E +
Sbjct: 515 EDLEKINELCEVVRDASLCGLGEAAPNPVLSTLKFFNNEYKEHV 558


>gi|90420730|ref|ZP_01228636.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335021|gb|EAS48782.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 559

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 151/394 (38%), Positives = 226/394 (57%), Gaps = 19/394 (4%)

Query: 19  SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L+D ++ G +  + KI +     D +I  ++++GLRG GGAGF  G KW F+       
Sbjct: 177 NLADYLAAGGYKLLSKIRDGSLAVDTLIETMQSAGLRGLGGAGFPAGKKWGFVRSYPG-- 234

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P  + +N DE EPGT KDR  +  +PH  +EG +IA+ A+ A   + Y+R E+      L
Sbjct: 235 PRLMTINGDEGEPGTFKDRYHLERDPHRTLEGALIAAHAVEAERIYFYMRDEYPAVLHIL 294

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +  +    A GL+      G+   I +  GAGAYICGEE+A+LES+EGK+G PR +PP+ 
Sbjct: 295 RTEIAALEAGGLITP----GF---IELRRGAGAYICGEESAMLESIEGKRGLPRHRPPYI 347

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT  +NVE++  +  I+  G  W++G G+    G + +S+SG V  P     
Sbjct: 348 AEVGLFGRPTLNHNVETLWWIRDIVDNGPEWFTGLGKPGFPGLRSWSVSGRVREPGVKLA 407

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG-LKEMGSGL 315
              +T  ELI++HCGG+  G     A +PGG+S   LPA  +    +D+ G L   G+ +
Sbjct: 408 PAGVTVRELIDEHCGGMAAG-HAFKAYLPGGASGGVLPAA-LGDIPLDFGGELARQGAFV 465

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ AV+V     DI +A   L  F++HESCGQCTPCREGTG ++ ++E   +G   +  I
Sbjct: 466 GSHAVVVFSDKDDIREATLNLLRFFEHESCGQCTPCREGTGKLVSLLES--RGPIDETAI 523

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             L  V ++    +IC LG AA  P+  L+ +FR
Sbjct: 524 RDLETVLRDA---SICGLGQAAPNPVNHLLTHFR 554


>gi|300432247|gb|ADK12978.1| Hox2 diaphorase large subunit [Thiocapsa roseopersicina]
          Length = 610

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 140/390 (35%), Positives = 206/390 (52%), Gaps = 25/390 (6%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESE 88
           V ++L+ G +  + EV+ SGLRGRGGAGF+T +KW F    C + P    Y+V NADE E
Sbjct: 199 VRRLLDAGAEAALAEVERSGLRGRGGAGFTTALKWRF----CREAPGTDRYVVCNADEGE 254

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR ++      +IEG  + +  IGA   F+Y+RGE+      L++ +    A GL
Sbjct: 255 PGTFKDRVLLTDYTDLVIEGMTVCAGVIGARRGFLYLRGEYRYLLPHLESVLQRRRAEGL 314

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG+      G+D DI +H GAGAYICGEE+AL+ESLEGK+G  R +PPFP   G    PT
Sbjct: 315 LGTRILGADGFDFDIEIHLGAGAYICGEESALIESLEGKRGVTRKRPPFPVTSGFDDQPT 374

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVE+      +++ G  W  G G + + G+K+ S+SG    P   E        +++
Sbjct: 375 VVNNVETFLAAARVVQWGGYWLRGEGTDQSAGSKILSVSGDCARPGIYEYPFGTPVHQVL 434

Query: 267 EKHCGGIRGGWDNLLAV-IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
              CG      +N  AV I G +     PA   R  I+ ++ L   GS       ++ D 
Sbjct: 435 SD-CGA-----ENTQAVQISGAAGATLSPADFDR--IIAFEDLPTAGS------FMIFDH 480

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           S D++  +   + F+ HESCG CTPCR G   +  ++E++  G   + ++  +  +   +
Sbjct: 481 SRDLLDMVRNFAAFFAHESCGFCTPCRVGGALLRNLVEKVAAGQGSEYDLSEMRRIGTVM 540

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEER 415
              + C LG  A   +   +  F PLI  R
Sbjct: 541 RRASYCGLGHTAPNHVVNTLDKF-PLIYGR 569


>gi|126726910|ref|ZP_01742749.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2150]
 gi|126703868|gb|EBA02962.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2150]
          Length = 562

 Score =  232 bits (591), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 204/369 (55%), Gaps = 18/369 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D + ++V  SGLRG GGAGF +G KWSF+      R  YL VN DE EPGT KDR  +  
Sbjct: 209 DQVQDKVLESGLRGLGGAGFPSGKKWSFVRMEQGTR--YLAVNGDEGEPGTFKDRYYLER 266

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            PH  +EG +IA++A+ A   FIY+R E+      L   +    A+G++    + GY   
Sbjct: 267 TPHVFLEGMLIAAWAVEAEKCFIYMRDEYPAVLHILAQEIAALEAAGIV----EAGY--- 319

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +  GAGAYICGEE+A++ES+EGKKG PR +PPF A VG++  PT V+NVE++  V  I
Sbjct: 320 IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPFVAQVGIFNRPTLVHNVETLYWVTKI 379

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
            R G    +   +    G + +SISG V  P         T  +LIE   G + G     
Sbjct: 380 CREGPECLNTTVKNGRTGLRSYSISGRVKNPGVHLLPAGSTIMDLIEASGGMLDG--HEF 437

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            A  PGG S   LPA  M    MD+D L+ +G+ +G+AA++++        A   +  F+
Sbjct: 438 KAYQPGGPSAGLLPA-HMNDIPMDFDTLQAVGTFIGSAAIVILSDQDRARDAALNMLKFF 496

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           + ESCGQCTPCR G    +++M+          + DLL ++   +   +IC LG AA  P
Sbjct: 497 EDESCGQCTPCRVGCEKAVKLMQE------DTWDADLLTDLCDVMVDASICGLGQAAPNP 550

Query: 401 IQGLIKNFR 409
           I+  +++F+
Sbjct: 551 IKLTLQHFK 559


>gi|161525535|ref|YP_001580547.1| NADH dehydrogenase (quinone) [Burkholderia multivorans ATCC 17616]
 gi|189349737|ref|YP_001945365.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
 gi|160342964|gb|ABX16050.1| NADH dehydrogenase (quinone) [Burkholderia multivorans ATCC 17616]
 gi|189333759|dbj|BAG42829.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
          Length = 525

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 206/361 (57%), Gaps = 6/361 (1%)

Query: 50  SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           SGLRGRGGA F  G+KW  + +  S +  Y+V NADE + GT  DR +M  +P+ LIEG 
Sbjct: 148 SGLRGRGGAAFPAGIKWRTV-RQASAKQKYIVCNADEGDSGTFSDRLLMECDPYCLIEGM 206

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167
           +IA  A GA   +IYVR E+     +L+AA+     +G LG +  LG  +  ++ V  GA
Sbjct: 207 IIAGVATGATVGYIYVRSEYPHAIATLEAAIARAREAGWLGEHV-LGSAHAFELHVAKGA 265

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           G+Y+CGEETALLESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++
Sbjct: 266 GSYVCGEETALLESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAF 325

Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
           Y  +G   +RGT  F ++G++ Y   VE +  +T  EL+    GG   G     A + GG
Sbjct: 326 YRDYGMGRSRGTLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPARAAQV-GG 384

Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347
                LP  Q     +DY+    +G+ +G   +++ D ++++ +       F   ESCG+
Sbjct: 385 PLGTYLPEHQWD-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGK 443

Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           CTPCR G+   +  + R+  G   +R+I LL ++   +   ++CA+G    +P+   + +
Sbjct: 444 CTPCRIGSTRGVETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDH 503

Query: 408 F 408
           F
Sbjct: 504 F 504


>gi|169832066|ref|YP_001718048.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638910|gb|ACA60416.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 539

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 147/411 (35%), Positives = 238/411 (57%), Gaps = 13/411 (3%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFS 61
           Q R+  +  GL   + +++ ++R  +  + ++L    G   +++ V+ SGLRGRGGAGF 
Sbjct: 112 QQRVVLDNSGLIDPEDINEYIARDGYFALAEVLRSRAGPADVVDAVRRSGLRGRGGAGFP 171

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG KW F      + P  Y++ NADE +PG   DR I+   PH ++EG +IA +A+GA  
Sbjct: 172 TGEKWFF--AAAQEGPEKYIICNADEGDPGAFMDRSILEGNPHAVLEGMLIAGYAVGAQE 229

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETA 177
            ++YVR E+    + L+ A+ +    GLLG     S   +DVDI +  GAGA++CGEETA
Sbjct: 230 GYVYVRAEYPLAVKRLEIAIRQAQKLGLLGKGILGSDFDFDVDIAL--GAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S  G +G+PR++PP+P   GLY  PT +NNVE++A VP I+R G  W++  G E ++
Sbjct: 288 LLRSAMGFRGEPRVRPPYPVEKGLYDKPTIINNVETLANVPAIIRNGPEWFAAMGTEGSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E  M I+  +++     G   G   + AV  GG S   +PA +
Sbjct: 348 GTKIFSLAGQIKNTGLIEVPMGISLADIVYDIGAGPPPGR-RIKAVQTGGPSGGAVPA-E 405

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L+ +G+ +G+  +IV+D +  ++        F  HESCG CT CR G   
Sbjct: 406 LLDVPVDYESLQAVGTIMGSGGLIVLDNTDCMVDLAKFYMQFAAHESCGACTLCRVGVVH 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++ ++ER+ +G     ++  L E++ ++   ++C LG  AA P+   +K F
Sbjct: 466 VVDILERITQGEGTLDDLQELEELAYDVRDASLCGLGQTAANPVLSTMKYF 516


>gi|221201245|ref|ZP_03574285.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD2M]
 gi|221206301|ref|ZP_03579314.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD2]
 gi|221173610|gb|EEE06044.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD2]
 gi|221179095|gb|EEE11502.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD2M]
          Length = 525

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 206/361 (57%), Gaps = 6/361 (1%)

Query: 50  SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           SGLRGRGGA F  G+KW  + +  S +  Y+V NADE + GT  DR +M  +P+ LIEG 
Sbjct: 148 SGLRGRGGAAFPAGIKWRTV-RQASAKQKYVVCNADEGDSGTFSDRLLMECDPYCLIEGM 206

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167
           +IA  A GA   +IYVR E+     +L+AA+     +G LG +  LG  +  ++ V  GA
Sbjct: 207 IIAGVATGATVGYIYVRSEYPHAIATLEAAIARAREAGWLGEHV-LGSAHAFELHVAKGA 265

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           G+Y+CGEETALLESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++
Sbjct: 266 GSYVCGEETALLESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAF 325

Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
           Y  +G   +RGT  F ++G++ Y   VE +  +T  EL+    GG   G     A + GG
Sbjct: 326 YRDYGMGRSRGTLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGHPARAAQV-GG 384

Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347
                LP  Q     +DY+    +G+ +G   +++ D ++++ +       F   ESCG+
Sbjct: 385 PLGTYLPEHQWD-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGK 443

Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           CTPCR G+   +  + R+  G   +R+I LL ++   +   ++CA+G    +P+   + +
Sbjct: 444 CTPCRIGSTRGVETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDH 503

Query: 408 F 408
           F
Sbjct: 504 F 504


>gi|221213582|ref|ZP_03586556.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD1]
 gi|221166371|gb|EED98843.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD1]
          Length = 525

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 206/361 (57%), Gaps = 6/361 (1%)

Query: 50  SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           SGLRGRGGA F  G+KW  + +  S +  Y+V NADE + GT  DR +M  +P+ LIEG 
Sbjct: 148 SGLRGRGGAAFPAGIKWRTV-RQASAKQKYVVCNADEGDSGTFSDRLLMECDPYCLIEGM 206

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167
           +IA  A GA   +IYVR E+     +L+AA+     +G LG +  LG  +  ++ V  GA
Sbjct: 207 IIAGVATGATVGYIYVRSEYPHAIATLEAAIARAREAGWLGEHV-LGSAHAFELHVAKGA 265

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           G+Y+CGEETALLESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++
Sbjct: 266 GSYVCGEETALLESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAF 325

Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
           Y  +G   +RGT  F ++G++ Y   VE +  +T  EL+    GG   G     A + GG
Sbjct: 326 YRDYGMGRSRGTLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPARAAQV-GG 384

Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347
                LP  Q     +DY+    +G+ +G   +++ D ++++ +       F   ESCG+
Sbjct: 385 PLGTYLPEHQWD-VPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGK 443

Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           CTPCR G+   +  + R+  G   +R+I LL ++   +   ++CA+G    +P+   + +
Sbjct: 444 CTPCRIGSTRGVETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDH 503

Query: 408 F 408
           F
Sbjct: 504 F 504


>gi|260427443|ref|ZP_05781422.1| NAD-dependent formate dehydrogenase beta subunit [Citreicella sp.
           SE45]
 gi|260421935|gb|EEX15186.1| NAD-dependent formate dehydrogenase beta subunit [Citreicella sp.
           SE45]
          Length = 506

 Score =  231 bits (590), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/391 (36%), Positives = 211/391 (53%), Gaps = 6/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL    + G    + + L    + I +EVK SGLRGRGGAGF TG+KW  +    +DR  
Sbjct: 109 SLDQYEALGGLVGLRRALGMTGEQITDEVKLSGLRGRGGAGFPTGIKWDTVRMAHADR-K 167

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  IA    GA   F+Y R E+      ++ 
Sbjct: 168 YIVCNADEGDSGTFADRMIMEGDPFCLIEGMTIAGIGCGATKGFVYTRSEYPDAVAVMRR 227

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++   A+G+LG +    G   ++ V  GAGAY+CGEET+LL SLEGK+G  R KPP PA
Sbjct: 228 AIEIARAAGVLGPDVLGSGKAFELEVRVGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 287

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G +G PT VNNV S+A VP I  +GA +Y+ FG   ++GT    I+G+V +    E +
Sbjct: 288 LEGAFGKPTVVNNVISLATVPVIFEKGAEFYANFGLGRSKGTIPLQIAGNVRHGGLFETA 347

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +   +++E   GG   G   + AV  GG     L   Q       Y+     G+ +G 
Sbjct: 348 FGMKLGQIVEDLGGGSASG-RAVKAVQVGGPLGAYLGTDQFD-TPFGYEEFDGEGALIGH 405

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D + D++        F   ESCG+CTPCR G    +  ++R+  G A+   + L
Sbjct: 406 AGLVVFDDTADMLGMARFAMEFCAVESCGKCTPCRIGAVRGVETLDRIAAGDAEA--VPL 463

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++ + ++  ++CALG    +P+   ++ F
Sbjct: 464 LTDLCETMKDGSLCALGGFTPYPVMSALRLF 494


>gi|297569386|ref|YP_003690730.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2]
 gi|296925301|gb|ADH86111.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2]
          Length = 601

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/392 (37%), Positives = 230/392 (58%), Gaps = 31/392 (7%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWS-------FMPK-----------VCSDRP----HYL 80
           II+E+  SGLRGRGG G+  G+KWS       F+P+             +DRP     Y+
Sbjct: 184 IIDEITRSGLRGRGGGGYPVGLKWSTVAKAGAFVPQAGRSSRQSAGATAADRPDGPRKYV 243

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE +PG   DR ++   PH ++EG  IA++A+GA   ++YVR E+    E L+ A+
Sbjct: 244 ICNADEGDPGAFMDRSVLECAPHRVLEGMAIAAYAVGADFGYLYVRAEYPLAVERLRKAI 303

Query: 141 DECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            +    GLLG N   S   + V+I +  GAGA++CGEETALL S+EG++GQPR +PP+PA
Sbjct: 304 VQAEKRGLLGRNIGGSAFNFQVEIRL--GAGAFVCGEETALLASIEGRRGQPRPRPPYPA 361

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+GCPT +NNVE++A V  I+ RGA W++  G E ++GTK+F+++G +     +E  
Sbjct: 362 EHGLWGCPTLINNVETLANVAAIINRGADWFAALGTEKSKGTKVFALAGKIKNTGLIEVP 421

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M I+  E++ +   G  GG   + AV  GG S  C+PA      + DY+ L+  GS +G+
Sbjct: 422 MGISIHEIVHEMGSGEVGG---IKAVQTGGPSGGCIPAEHFHLPV-DYESLQAEGSIMGS 477

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             +I+MD    ++        F   ESCG+C PCR GT  ++ ++E++ +G     ++  
Sbjct: 478 GGMIIMDEGAAMVDVARFFMEFCVEESCGKCAPCRVGTTQVLLLLEKIGRGEGTAADLGQ 537

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           L E+   ++  ++C LG +AA P+   ++ FR
Sbjct: 538 LEELCHLLQQTSLCGLGQSAANPVLSTLRFFR 569


>gi|1617570|gb|AAB57889.1| NAD-reducing hydrogenase alpha subunit [Rhodococcus opacus]
          Length = 604

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 204/383 (53%), Gaps = 15/383 (3%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + II+ +  S LRGRGGAGFSTG+KW       SD   Y++ NADE EPGT KDR ++  
Sbjct: 206 EQIIDRIIESKLRGRGGAGFSTGLKWQLCRTAVSD-DKYIICNADEGEPGTFKDRVLLTR 264

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYD 158
            P  +  G +IA+ AIG+    +Y+R E+I  ++ L+  + E    GLLG+    + G+D
Sbjct: 265 SPKKVFMGMIIAARAIGSRNGILYLRWEYIYLKDYLERQLQELRDEGLLGARIGGQSGFD 324

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            DI +  GAGAYICG+E+AL+ES EGK+G PR+KPPFP   G  G PT VNNVE+ A   
Sbjct: 325 FDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQEGYLGKPTCVNNVETFAAAA 384

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I+  G +W+   G   + GT+L S++G  + P   E    +T +E++         G  
Sbjct: 385 RIMEEGPNWFRALGTPESTGTRLLSVAGDCSRPGIYEVEWGVTLNEVLTTV------GAR 438

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           +  AV   G S  C+   +     M Y+ +   G      A  + +   D+++ +     
Sbjct: 439 DARAVQISGPSGQCVSVAEDGERRMAYEDISCNG------AFTIFNTERDLLEIVKDFMQ 492

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+  ESCG C PCR G   + + +E ++ G A ++++D +      ++  + C LG  + 
Sbjct: 493 FFVDESCGICVPCRVGNIDLHKKVELVIAGKACQKDLDDVVSWGALVKKTSRCGLGATSP 552

Query: 399 WPIQGLIKNFRPLIEERIDQYHR 421
            PI   +  F  +  +R+ +  +
Sbjct: 553 NPILTTLDKFPEIYTKRLRKQKK 575


>gi|237653484|ref|YP_002889798.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
 gi|237624731|gb|ACR01421.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
          Length = 585

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/349 (39%), Positives = 204/349 (58%), Gaps = 19/349 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW  +    +  P YLVVNADE EPGT KDR  +   PH ++EG + ++ A+GA 
Sbjct: 231 FPTARKWQAVRAGAA--PRYLVVNADEGEPGTFKDRHYLETAPHRVLEGALASALAVGAA 288

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             ++Y+R E+      L+ A+ E  A+GL+      G+   I++  GAGAYICGEE+AL+
Sbjct: 289 AIYVYLRDEYPGLHAVLREAIAELEAAGLVAP----GF---IVLRRGAGAYICGEESALI 341

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK G+PR +PPF A  GL+G PT VNNVE++  +P +     + ++G GR    G 
Sbjct: 342 ESLEGKPGKPRHRPPFVAEAGLFGRPTLVNNVETLYWIPLLA--AGAAFAGEGRRGRSGL 399

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + FS+SG VN P        IT  EL+++HCGG++ G   LLA +PGG+S   LPA  + 
Sbjct: 400 RSFSVSGRVNKPGVHLAPAGITLRELVDEHCGGLQPG-HRLLAYLPGGASGGILPAA-LA 457

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D L+  GS +G+AA+IV+    D+      L  F+  ESCGQCTPCR GT  ++
Sbjct: 458 DLPLDFDTLQPHGSFIGSAAIIVLSDQDDLRAVADNLLAFFADESCGQCTPCRLGTEKLL 517

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            ++           ++  L  +++ +   +IC LG AA  P+  L++ F
Sbjct: 518 TLLR------TDDWDVARLQALAQTLRDASICGLGQAAPNPVSSLLRFF 560


>gi|126733158|ref|ZP_01748905.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2]
 gi|126716024|gb|EBA12888.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2]
          Length = 563

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 211/379 (55%), Gaps = 22/379 (5%)

Query: 34  KILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMP-KVCSDRPHYLVVNADESEPG 90
           + L +G DW  + ++V ASGLRG GGAGF +G KW F+    C   P YL VN DE EPG
Sbjct: 199 QALREGGDWEDVQDKVLASGLRGLGGAGFPSGKKWGFVRGNAC---PRYLAVNGDEGEPG 255

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           T KDR  +   PH  +EG +IA++A+ A   FIY+R E+    + L   +     +G++ 
Sbjct: 256 TFKDRYYLERMPHLFLEGMLIAAWAVEADTCFIYMRDEYPAVLDILALEIKALEGAGIVA 315

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
                GY   I +  GAGAYICGEE+A++ES+EGK+G PR +PPF A VG++  PT V+N
Sbjct: 316 E----GY---IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAQVGIFDRPTLVHN 368

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270
           VE++  V  I R G    +   +    G + +S+SG V  P         T  ++IE   
Sbjct: 369 VETLLWVARICREGPEVLNSTEKNGRVGLRSYSVSGRVAQPGVYLLPAGSTITDIIEA-A 427

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GG+  G     A  PGG S   LPA  +    +D+D L+ +G+ +G+AAV+V+       
Sbjct: 428 GGMAAG-HVFKAYQPGGPSSGLLPA-TINDVPLDFDTLQPLGTFIGSAAVVVLSDQDRAR 485

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
            A   +  F++ ESCGQCTPCR G    +++M+      A   +  LL ++   +   +I
Sbjct: 486 DAALNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------ADAWDQPLLEDLCTAMADASI 539

Query: 391 CALGDAAAWPIQGLIKNFR 409
           C LG AA  PI+ ++++F+
Sbjct: 540 CGLGQAAPNPIKLVMQHFK 558


>gi|83950636|ref|ZP_00959369.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM]
 gi|83838535|gb|EAP77831.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM]
          Length = 561

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/349 (39%), Positives = 195/349 (55%), Gaps = 18/349 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+    +  P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A 
Sbjct: 227 FPSGRKWGFV--RAAQGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAE 284

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             FIY+R E+    E L   +     +GL+      GY   I +  GAGAYICGEE+A++
Sbjct: 285 TCFIYMRDEYPAVLEILAREIAALEEAGLVAP----GY---IDLRRGAGAYICGEESAMI 337

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR +PPF A VG++G PT VNNVE++  V  +LR G    SG  +   +G 
Sbjct: 338 ESIEGKRGLPRHRPPFVAQVGIFGRPTLVNNVETLLWVARVLREGPEILSGVEKNGRKGL 397

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + FS+SG V  P         T  ++IE  CGG+  G  +  A  PGG S   LPA  M 
Sbjct: 398 RSFSVSGRVKNPGVHLLPAGSTMQDIIEA-CGGMLDG-HSFKAYQPGGPSAGLLPA-SMS 454

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+E G+ +G+AA++V+        A   +  F++ ESCGQCTPCR G    +
Sbjct: 455 DIPMDFDVLQEHGTFIGSAAIVVLSDRDSARDAALNMLRFFEDESCGQCTPCRVGCEKAV 514

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++M+      A   +  LL E+   +   +IC LG AA  PI+  +K+F
Sbjct: 515 KLMQ------ADTWDQPLLEELCTAMADASICGLGQAAPNPIRLTMKHF 557


>gi|170745441|ref|YP_001766898.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170659042|gb|ACB28096.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium radiotolerans JCM 2831]
          Length = 572

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 134/353 (37%), Positives = 195/353 (55%), Gaps = 21/353 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  +       P  + VN DE EPGT KD+  +  +PH  +EG +I +  + A 
Sbjct: 232 FPTGRKWRSVRG--EPGPRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAP 289

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+   RE L   + +    G             I +  GAGAYICGEE++L+
Sbjct: 290 EVYIYLRDEYPISREILTREIAKLPEGG-----------PRIHLRRGAGAYICGEESSLI 338

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR KPPFP  VGL+  PT +NN+E++  V  ++ RG  W+   GR +  G 
Sbjct: 339 ESLEGKRGLPRHKPPFPFQVGLFNRPTLINNIETLFWVRDLIERGGDWWKSHGRNDRVGL 398

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P        +T  ELI+++CGG+  G     A +PGG+S   LPA  M 
Sbjct: 399 RSYSVSGRVKEPGVKLAPAGLTIQELIDEYCGGMADG-HTFAAYLPGGASGGILPA-SMN 456

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L++ G  +G+AAV+++    D+  A   L  F++ ESCGQCTPCR GT    
Sbjct: 457 DIPLDFGTLEKYGCFIGSAAVVILSDRDDVRGAALNLMRFFEDESCGQCTPCRSGTQKAR 516

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +ME+ V       + +LL E+S+ +   +IC LG AA+ P+  +IK F  L 
Sbjct: 517 ILMEQGVW------DTELLGELSQCMRDASICGLGQAASNPLSSVIKYFPDLF 563


>gi|148554394|ref|YP_001261976.1| NADH dehydrogenase (quinone) [Sphingomonas wittichii RW1]
 gi|148499584|gb|ABQ67838.1| NADH dehydrogenase (quinone) [Sphingomonas wittichii RW1]
          Length = 516

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 144/411 (35%), Positives = 214/411 (52%), Gaps = 36/411 (8%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-- 77
           L+  ++ G W  ++         +++ +KASGLRGRGGAGF TG+KW     V    P  
Sbjct: 105 LAAYVASGGWRGLEAARAMAPQAVVDAIKASGLRGRGGAGFPTGIKWQ---TVLDAGPAE 161

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            ++V NADE + GT  DR +M  +P+ LIEG  IA+ A+GA   ++Y+R E+     ++Q
Sbjct: 162 KFVVCNADEGDSGTFADRMLMEGDPYCLIEGMAIAAHAVGADHGYVYIRSEYPFAIRAMQ 221

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A++          ++ L     + V  GAGAY+CGEETALL+S+EGK+GQ R KPP PA
Sbjct: 222 GAIER---------SAALLAPFTLEVRVGAGAYVCGEETALLDSIEGKRGQVRAKPPLPA 272

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT +NNV S+A VP IL  GA  Y+  G   +RGT    ++G++      E  
Sbjct: 273 IEGLFGQPTVINNVLSLAAVPFILSEGAEAYAAVGLGRSRGTMPVQLAGNIRNGGLFEIG 332

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             I+  EL+E   GG   G   + AV  GG     LP   M     DY+     G+ +G 
Sbjct: 333 FGISLGELVETVGGGTASGRP-VRAVQVGGPLGAYLPP-SMFDLPFDYESFAAAGALIGH 390

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG--------- 368
           A + V D + D+ +       F   ESCG+CTPCR G+   +  ++R++ G         
Sbjct: 391 AGITVFDDTVDMAQMARFAMEFCAVESCGKCTPCRIGSTRGVETIDRIIAGGRGGDRVEA 450

Query: 369 IAQKR-----------EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + Q R           EI LL ++   ++  ++CALG    +P+   + +F
Sbjct: 451 LPQMRNAKARQKSVEQEIALLRDLCDTMKYGSLCALGGFTPYPVLSALNHF 501


>gi|322419374|ref|YP_004198597.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320125761|gb|ADW13321.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 489

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 142/384 (36%), Positives = 216/384 (56%), Gaps = 4/384 (1%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           RG+    + +  +    I+NE+K SGLRGRGG GF TG+KW    +  +D+  Y+V NAD
Sbjct: 30  RGYEALAEAVTNRQPADIVNEIKKSGLRGRGGGGFPTGLKWEITARNQADQ-KYVVCNAD 88

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG   DR ++  +PH+++E   +  +AIGA    +Y+R E+    + LQ A+ +   
Sbjct: 89  EGDPGAFMDRAVLEGDPHSVVEAMALCGYAIGATVGTVYIRAEYPLAIKRLQMAIKDARE 148

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G+LG      G+D DI + +GAGA++CGEETAL+ S+EG++G+P  KPPFPA  G +G 
Sbjct: 149 AGVLGKRIFGSGFDFDIELKYGAGAFVCGEETALIHSMEGERGEPTTKPPFPAESGYWGK 208

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +NNVE+ A V  IL  G  W++G G E ++GTK+F+++G V     +E  M  T  E
Sbjct: 209 PTAINNVETFANVVPILLNGGDWFAGIGTEKSKGTKVFALAGKVRNVGLIEVPMGTTLHE 268

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           +I +  GG   G     AV  GG S   L    +   I DYD L   GS +G+  +IVMD
Sbjct: 269 IIFEI-GGGILGGKKFKAVQTGGPSGGALTERDLDTPI-DYDNLVAKGSMMGSGGMIVMD 326

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
               ++        F   E+CG+CTPCR G+  +  +++++ +G     ++  L  +S  
Sbjct: 327 EDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYEILDKITRGEGTPEDLSRLKLLSTA 386

Query: 385 IEGRTICALGDAAAWPIQGLIKNF 408
           I+   +C LG     PI   +  F
Sbjct: 387 IKDTALCGLGQTMPNPILSTMSVF 410


>gi|159043830|ref|YP_001532624.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Dinoroseobacter shibae DFL 12]
 gi|157911590|gb|ABV93023.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Dinoroseobacter shibae DFL 12]
          Length = 565

 Score =  229 bits (585), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 144/379 (37%), Positives = 210/379 (55%), Gaps = 20/379 (5%)

Query: 32  VDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           V + L    DW  +  +VK SGLRG GGAGF +G KW F+    +  P YL VN DE EP
Sbjct: 201 VLRDLRASGDWEVVQAQVKQSGLRGLGGAGFPSGTKWGFV--RANPGPRYLAVNGDEGEP 258

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR  +   PH  +EG +IA++A+ A   +IY+R E+    E L+  +     +G+ 
Sbjct: 259 GTFKDRHYLERVPHLFLEGMLIAAWAVEAERCYIYMRDEYPAVLEILRREIAALEEAGI- 317

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
              ++ G+   I +  GAGAYICGEE+A++ES+EGK+G PR +PP+ A VGL+G PT V+
Sbjct: 318 ---AEPGH---IELRRGAGAYICGEESAMIESIEGKRGMPRHRPPYVAQVGLFGRPTLVH 371

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE++  +  I R G    S     +  G + +S+SG V  P         T  ++I+  
Sbjct: 372 NVETLHWIARICREGPEVLSATTHNDRVGLRSYSVSGRVARPGVYLLPAGSTILDIIDA- 430

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
            GG+  G     A  PGG S   LPA       +D+D L+ +G+ +G+AAV+V+      
Sbjct: 431 AGGMAEG-HVFKAFQPGGPSSGLLPASAA-DVPLDFDTLQPLGTFIGSAAVVVLSDQDRA 488

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
             A   +  F++ ESCGQCTPCR G    +++M+      A++ +  LL E+   +   +
Sbjct: 489 RDAALNMLRFFEDESCGQCTPCRVGCEKAVKLMQ------AERWDAGLLSELCTAMADAS 542

Query: 390 ICALGDAAAWPIQGLIKNF 408
           IC LG AA  PI   IK+F
Sbjct: 543 ICGLGQAAPNPILSTIKHF 561


>gi|319795811|ref|YP_004157451.1| NADH dehydrogenase (quinone) [Variovorax paradoxus EPS]
 gi|315598274|gb|ADU39340.1| NADH dehydrogenase (quinone) [Variovorax paradoxus EPS]
          Length = 519

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 141/409 (34%), Positives = 217/409 (53%), Gaps = 5/409 (1%)

Query: 2   LTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    S++D  +   +  + + L    + ++ +V  SGLRGRGGA F
Sbjct: 100 LKKQERLTFARMGITDPVSVADYEAHEGYAGLRRALGLKPEEVVQQVLDSGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    + +  Y+V NADE + GT  DR  M  +P  L+EG  IA  A GA  
Sbjct: 160 PAGIKWKTVMATPAAQ-KYIVCNADEGDSGTFSDRMTMEGDPLMLVEGMTIAGIATGATK 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+     ++  A+     +G LG N    G    + V  GAG+Y+CGEETALL
Sbjct: 219 GYVYIRSEYPHAIATMNEAIRAAETAGFLGDNILGSGRTFWLEVRKGAGSYVCGEETALL 278

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A VP IL RGA  Y  FG   +RGT
Sbjct: 279 ESLEGKRGIVRAKPPLPAITGLFGQPTLINNVITLASVPLILARGAEHYRDFGVGRSRGT 338

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE++  +T  EL+  + GG   G   + AV  GG     LP  Q  
Sbjct: 339 LPMQLAGNIKHGGLVEKAFGVTLRELLYDYGGGSASG-RPIKAVQVGGPLGAYLPESQWD 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G  +G   ++V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 398 -LPLDYEAYAAVGGTVGHGGIVVHDDTADLSKLARYAMEFCAIESCGKCTPCRIGSTRGV 456

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++++     +   + LL ++   +   ++CA+G    +P+   + +F
Sbjct: 457 EVIDKIRADNKRVEHVILLRDLCNTMVHGSLCAMGGMTPFPVLSALDHF 505


>gi|307292624|ref|ZP_07572470.1| NADH dehydrogenase (quinone) [Sphingobium chlorophenolicum L-1]
 gi|306880690|gb|EFN11906.1| NADH dehydrogenase (quinone) [Sphingobium chlorophenolicum L-1]
          Length = 526

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 147/420 (35%), Positives = 210/420 (50%), Gaps = 42/420 (10%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D      W  +D         +++ VKASGLRGRGGAGF TG+KW  +    SD   
Sbjct: 104 SLQDYADHDGWRGLDAARAMPPQAVVDAVKASGLRGRGGAGFPTGIKWQTVLDAVSDA-K 162

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           ++V NADE + GT  DR +M  +P  LIEG  IA  A+GA   +IY+R E+     ++Q 
Sbjct: 163 FIVCNADEGDSGTFADRMLMEGDPFCLIEGMAIAGHAVGAGHGYIYIRSEYPFAIAAMQE 222

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+        L +     + +++ V  GAGAY+CGEETALL+S+EGK+GQ R KPP PA 
Sbjct: 223 AI-------ALSAERIAPFTLEVRV--GAGAYVCGEETALLDSIEGKRGQVRAKPPLPAL 273

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT +NNV S+A VP IL +GA  Y+  G   +RGT    ++G+V +    E   
Sbjct: 274 AGLFGQPTVINNVLSLAAVPFILAKGAEAYAAVGFGRSRGTMPVQLAGNVKHGGLYEIGF 333

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  EL+    GG   G   + AV  GG      P G M     DY+   + G  +G A
Sbjct: 334 GITLGELVNGIGGGTASGR-PVRAVQVGGPLGAYFPPG-MFDLPFDYEAFAQAGGLIGHA 391

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG---------- 368
            + V D S D+         F   ESCG+CTPCR G+   + V++R++ G          
Sbjct: 392 GITVFDDSLDMAHMARFAMEFCSVESCGKCTPCRIGSTRGVEVLDRIIAGRDAPAPVPTD 451

Query: 369 --------------------IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
                                  + +  LL ++   ++  ++CALG    +P+   + +F
Sbjct: 452 QPWEGYLKTALNSRTPDRIDTGLEAQTTLLRDLCDTMKYGSLCALGGFTPYPVLSALDHF 511


>gi|114777303|ref|ZP_01452314.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Mariprofundus ferrooxydans PV-1]
 gi|114552448|gb|EAU54931.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Mariprofundus ferrooxydans PV-1]
          Length = 588

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 121/355 (34%), Positives = 196/355 (55%), Gaps = 16/355 (4%)

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKW F  +   D  HY++ NADE EPGT KDR ++    H + EG  +  + IGA   ++
Sbjct: 216 MKWKFCREAKGD-AHYVICNADEGEPGTFKDRILLTSHAHAVFEGMTLCGYVIGAQKGYL 274

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLES 181
           Y+R E+      L A +     +GLLG+    + G+D DI +  GAGAYICGEE++L+ES
Sbjct: 275 YLRAEYRYLLPELYAVLSRRQQAGLLGAGILGQTGFDFDIDIIVGAGAYICGEESSLIES 334

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +E K+G PR++PPFP   G  G PT VNNVE++A    I   G+ W++  G + + GTK+
Sbjct: 335 MEQKRGIPRVRPPFPVTSGFLGQPTVVNNVETLAAAAQIAIHGSEWFNTQGSDKSDGTKI 394

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
            S+SG    P   E    ++  ++++  CG      +N+ A+  GG S   +   +    
Sbjct: 395 LSVSGDCTTPGIYEYPFGVSIQKILDD-CGA-----ENVQAIQVGGPSGTLIGPDEFERK 448

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           +    G +++ +G    + ++     D++  I   + F+ HESCG CTPCR GT  +   
Sbjct: 449 L----GFEDLATG---GSFMIFGAERDLLAVISNFAHFFAHESCGFCTPCRVGTSLLKNG 501

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++++V G   + ++D +Y ++  ++ R+ C LG  AA P+   ++ F  L EER+
Sbjct: 502 LDKIVSGHGTRYDMDEMYRMATLVKRRSHCGLGQTAANPVLDALQRFPKLFEERL 556


>gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16]
 gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16]
          Length = 626

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 191/333 (57%), Gaps = 5/333 (1%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V N DE +PG   DR IM   PH++IEG +IA  A G+   +IYVR E+      L+ 
Sbjct: 220 YVVCNGDEGDPGAFMDRSIMEGNPHSIIEGMLIAGVAAGSDEGYIYVRAEYPLAVSRLRN 279

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+      GLLG +  LG D    +H   GAGA++CGE +AL  S+EG +G PR+KPP  
Sbjct: 280 AIARAEELGLLGDHI-LGTDFSFHLHVNRGAGAFVCGEGSALTASIEGNRGMPRVKPPRT 338

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+  PT +NNVE+ + VP I+R G+ WY   G E + GTK F+++G+V     +E 
Sbjct: 339 VEHGLWAQPTVLNNVETFSTVPLIIRNGSEWYRSIGTEKSPGTKAFALTGNVVNTGLIEV 398

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  T  E+I    GGI+ G     AV  GG S  CL    +    MD+D LK++G+ +G
Sbjct: 399 PMGTTLREVIFDIGGGIKDG-KKFKAVQIGGPSGGCLTEEHL-DMPMDFDSLKKVGAMIG 456

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++VMD  T +++       F ++ESCG+C PCREGT  M+ ++ R+V       ++D
Sbjct: 457 SGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTRRMLEILTRIVNNEGSLEDLD 516

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           LL  ++  I   ++C LG +A  P+Q  +K FR
Sbjct: 517 LLETLANTITETSLCGLGQSACKPVQSTLKYFR 549


>gi|119385582|ref|YP_916637.1| NADH dehydrogenase (quinone) [Paracoccus denitrificans PD1222]
 gi|119376177|gb|ABL70941.1| formate dehydrogenase beta subunit [Paracoccus denitrificans
           PD1222]
          Length = 513

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/399 (36%), Positives = 219/399 (54%), Gaps = 22/399 (5%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+S+  + G    + + +E G + I+ EV  SGLRGRGGAGF TG+KW  +    + R  
Sbjct: 107 SVSEYEAHGGLVGLSRAIEIGPERIVEEVTESGLRGRGGAGFPTGIKWKTVAGAKAAR-K 165

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + G+  DR +M  +P  LIEG  IA  A GA   ++Y+R E+      ++A
Sbjct: 166 YIVCNADEGDSGSFADRMLMEGDPLVLIEGMAIAGIATGAVQGYVYIRSEYPDAIRLMEA 225

Query: 139 AVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A+ +   +G+LG +   S   YD+++ V  GAGAY+CGEET+LL SLEGK+G  R KPP 
Sbjct: 226 AIGKARQAGILGQSVLGSAHAYDMEVRV--GAGAYVCGEETSLLNSLEGKRGVVRAKPPI 283

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G  G PT VNNV S+A VP IL  G + Y+  G   ++GT    I+G+V Y    E
Sbjct: 284 PALEGFLGRPTVVNNVISLASVPWILSHGGAEYAKLGIGRSKGTIPIQIAGNVKYGGLFE 343

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVI--PGGSSVPC----LPAGQMRGAIMDYDGLK 309
            +  ++  ++I +  GG   G     A +  P GS +P     +P G        Y+ L 
Sbjct: 344 AAFGMSLGQIINEVGGGTASGRPVKAAQVGGPLGSYIPHWNFDVPFG--------YEELA 395

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
                LG A + V D + D++K       F   ESCG+CTPCR G+   +  ++R+ +G 
Sbjct: 396 GKEGLLGHAGITVFDDTADMLKLARFAMEFCAVESCGKCTPCRIGSIRGVETIDRIAQG- 454

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             +  I +L ++   ++  ++CALG  A +P+   + +F
Sbjct: 455 -DETGIAILTDLCNTMKWGSLCALGGFAPFPVMSALTHF 492


>gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 620

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 221/404 (54%), Gaps = 8/404 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + +   +S G + ++ + L    + +I+ V  +GLRGRGG GF  G KW+   +  S   
Sbjct: 148 RDVDHYISLGGYASLARALSMSPEEVIDWVTRAGLRGRGGGGFPAGQKWASC-RSASGPQ 206

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            +++ N DE +PG   DR +M  +PH+++EG +I + A+GA   FIYVR E+    E+L 
Sbjct: 207 KFVLANGDEGDPGAFMDRSLMEGDPHSILEGMIIGAHAVGASKGFIYVRDEYPLAVENLA 266

Query: 138 AAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            A+ E    GLLG     S L +DVDI    G GA++CGE +AL+ S+EG+ G+PR+K  
Sbjct: 267 HAIREARRLGLLGRRILGSDLSFDVDIC--RGGGAFVCGESSALMASIEGRPGEPRVKYI 324

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
                GL+ CPT +NNVE+ A VP I+R G   Y   G +++ GTK+FS+ G V     V
Sbjct: 325 RSTERGLWECPTVLNNVETWANVPIIIREGVDGYRSLGTKDSPGTKVFSLVGKVRRSGLV 384

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T  E+I +  GG+  G +   AV  GG S  CLP  ++   + D+D L   GS 
Sbjct: 385 EVPMGTTLREIIFEIGGGVM-GRNRFKAVQTGGPSGGCLPESKLDLPV-DFDRLTREGSM 442

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  +IVMD  + ++        F + ESCG+C PCREG   M  ++E L     +  +
Sbjct: 443 MGSGGMIVMDHRSCMVDVARYFVKFLEGESCGKCAPCREGLKAMGEILEDLCSRRGRPGD 502

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +++L  +   +    +C LG  AA P+   +++F     E  DQ
Sbjct: 503 VEMLLFMGNALTDTALCGLGQTAANPVLSTLRHFMEEYREHQDQ 546


>gi|86140149|ref|ZP_01058711.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193]
 gi|85823086|gb|EAQ43299.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193]
          Length = 566

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 152/378 (40%), Positives = 218/378 (57%), Gaps = 22/378 (5%)

Query: 34  KILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           K L  G +W  +  +VK +GLRG GGAGF +G KW F+    ++ P YL VN DE EPGT
Sbjct: 204 KELRGGGNWEAVQEKVKEAGLRGLGGAGFPSGTKWGFV--RANEGPRYLAVNGDEGEPGT 261

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR  +   PH  +EG ++A++A+ A  AFIY+R E+    E L+  +     + ++  
Sbjct: 262 FKDRYYLERTPHVFLEGMLMAAWAVEAEKAFIYMRDEYPAVLEILRREITALEEAAIV-- 319

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
             + GY   I +  GAGAYICGEE+A++ES+EGK+G+PR +PPF A VG++G PT V+NV
Sbjct: 320 --EPGY---IALRRGAGAYICGEESAMIESIEGKRGEPRHRPPFVAQVGIFGRPTLVHNV 374

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++  V  I R G    +   +   +G + +S+SG V  P         T  ++IE  CG
Sbjct: 375 ETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLLPAGSTITDIIEA-CG 433

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+  G     A  PGG S   LPA  M    +D+D L+  GS +G+AAV+V+        
Sbjct: 434 GMLEG-HAFKAYQPGGPSSGLLPA-SMNDVPLDFDTLQPHGSFIGSAAVVVLSDQDSARD 491

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDLLYEVSKNIEGRTI 390
           A   +  F++ ESCGQCTPCR G        E+ VK +++K+ + DLL E+S  +   +I
Sbjct: 492 AALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMSEKKWDQDLLEELSTAMVDTSI 544

Query: 391 CALGDAAAWPIQGLIKNF 408
           C LG AA  PI+  IK+F
Sbjct: 545 CGLGQAAPNPIRLTIKHF 562


>gi|251770991|gb|EES51575.1| NADH dehydrogenase (quinone) [Leptospirillum ferrodiazotrophum]
          Length = 475

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 160/421 (38%), Positives = 234/421 (55%), Gaps = 10/421 (2%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAG 59
           ++   DR+ TN       SL+     G +  + ++L       +I E+K SGLRGRGG+G
Sbjct: 27  IMEGPDRVLTNPAIFGDPSLASYERGGGYKGLRRVLSGLSPSDVIAEIKESGLRGRGGSG 86

Query: 60  FSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           F T +KW    KV + R    Y+V N  E EPG+ KD  ++   PH ++EG +IA FA+ 
Sbjct: 87  FPTALKWE---KVANHRVPVRYVVANGSEGEPGSHKDHYLISRSPHQILEGMIIACFAVS 143

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176
           A    ++V+  F      L+ A +E  A+GLLG+N    G+ VDI +  G  AYI GEET
Sbjct: 144 AKSGHLFVKESFPEGINILRKAREEALAAGLLGNNILGSGFSVDIEIFVGPAAYIAGEET 203

Query: 177 ALLESLEGKKGQPRLKPPFPAN-VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           ALLE+LEG+  +PR KPPF    +GLY  PT VNNVE+ A V  IL  G   +   G   
Sbjct: 204 ALLEALEGRVPRPRPKPPFYPTEMGLYNKPTVVNNVETYAHVSRILAEGTVKFRERGTPK 263

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           + GT +FS+SG V  P  VE  +  + + L+  + GG   G +       GG S   LPA
Sbjct: 264 SPGTMIFSVSGSVRRPVVVELPLGFSLERLLYDYAGGPLPG-ETFQCFFTGGPSFGILPA 322

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
            ++    ++YD L+  G+GLG+A +IV+     I+      S FY+  SCGQC PCR GT
Sbjct: 323 REID-TPLEYDALRAKGTGLGSAGIIVLGSKDSILATTAAFSEFYEKGSCGQCPPCRLGT 381

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             + + +E L+ G   +  I+ L +V+K I+GR  C L  A+A+ ++ L+++F PL+ E 
Sbjct: 382 ESLHQTLEGLMNGQNSEDGIERLLKVTKMIKGRGNCGLITASAFMVESLLEHFTPLLREE 441

Query: 416 I 416
           +
Sbjct: 442 L 442


>gi|87198757|ref|YP_496014.1| NADH dehydrogenase (quinone) [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134438|gb|ABD25180.1| formate dehydrogenase beta subunit [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 512

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 145/411 (35%), Positives = 210/411 (51%), Gaps = 33/411 (8%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G W  + +  E G    I +V  SGLRGRGGAGF  G+KW+ +    S    
Sbjct: 100 SLDDYAASGGWQGLARAREIGPVSTIAQVTESGLRGRGGAGFPAGIKWTTVAN-ASGGTK 158

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE +  T  DR +M  +P  LIEG  IA FA+GA  +++Y+R E+    E ++ 
Sbjct: 159 YIVCNADEGDSATFADRMVMEGDPFMLIEGMAIAGFAVGAGKSYVYIRSEYPHAIEKMEK 218

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           AV           ++ L    ++ V  GAGAY+CGEET+LL SLEGK+G+ R KPP PA 
Sbjct: 219 AVR---------LSAALVAPFEVEVRVGAGAYVCGEETSLLNSLEGKRGEVRAKPPLPAL 269

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT VNNV ++A VP IL +GA  Y+  G   +RGT    ++G+V +    E   
Sbjct: 270 EGLFGKPTVVNNVLTLAAVPFILAQGAQEYANVGLGRSRGTMPIQLAGNVRHGGLFEVGF 329

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  EL+ +  GG   G   + AV  GG      P         DY+        +G A
Sbjct: 330 GITLGELVNEIGGGTASGRP-VRAVQVGGPLGAYHPPSDFH-LPFDYEAFAAADGLIGHA 387

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL----------VKG 368
            + V D + D+         F   ESCG+CTPCR G+   + +++R+          V+ 
Sbjct: 388 GITVFDDTADMSAQARFAMEFCAAESCGKCTPCRIGSTRGVELIDRIRARSGRRPDRVEA 447

Query: 369 IAQKR-----------EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + Q             EI LL ++ + ++  ++CALG    +P+   ++NF
Sbjct: 448 LPQMHNARKAERSLADEITLLEDLCETMKFGSLCALGGFTPYPVLSALRNF 498


>gi|238020589|ref|ZP_04601015.1| hypothetical protein GCWU000324_00475 [Kingella oralis ATCC 51147]
 gi|237867569|gb|EEP68575.1| hypothetical protein GCWU000324_00475 [Kingella oralis ATCC 51147]
          Length = 417

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 143/383 (37%), Positives = 199/383 (51%), Gaps = 19/383 (4%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM---PKVCSDRPHYLVVNADE 86
           DN+ K+LE            +GL G GGAGF T  KW+ M   P    DR  Y+V NA+E
Sbjct: 40  DNIAKVLED-----------AGLCGMGGAGFPTHRKWTAMAESPSETGDR--YVVCNANE 86

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EPGT KDR ++ H PH +IEG +IA+    A+   +Y+         + + A+ +    
Sbjct: 87  DEPGTFKDRFLLEHAPHQVIEGALIAAVYTRANNIILYINPHLTESLAATREAIAQWQKH 146

Query: 147 GLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
            L     + LG  + I V   +G YI GEETA++  L G    P+ KPPFP   G+ G P
Sbjct: 147 ALFQRIEAHLGKPLTIKVTESSGRYIGGEETAVISWLNGGFPFPQYKPPFPFQKGVAGEP 206

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T +NN E++A V  ILR GA WY G GR N  GTKL+S+SG V      E  M IT  EL
Sbjct: 207 TLLNNTETLAHVSHILRNGAEWYRGLGRANGVGTKLYSLSGDVLNEGLFELPMGITLREL 266

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           I+ + GG+  G     AV  GG S   L A  +    +D+   KE  SGLGT A+IV+  
Sbjct: 267 IDNYGGGMLEG-RTFKAVFMGGPSNNILTAKDLD-VPLDFVSAKERNSGLGTGAMIVVSE 324

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
            T I++       F+ + SCGQC PC+ GT  + R++ER+  G + + ++  L  +   +
Sbjct: 325 GTSIVRKTADYIQFFANNSCGQCPPCKGGTYQLARLVERVDNGTSTEDDLHALQNLVNIM 384

Query: 386 EGRTICALGDAAAWPIQGLIKNF 408
            G   C L   AA  +   ++ F
Sbjct: 385 PGAGRCGLITGAATVVASSMRTF 407


>gi|294146591|ref|YP_003559257.1| NAD-dependent formate dehydrogenase beta subunit [Sphingobium
           japonicum UT26S]
 gi|292677008|dbj|BAI98525.1| NAD-dependent formate dehydrogenase beta subunit [Sphingobium
           japonicum UT26S]
          Length = 526

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 147/420 (35%), Positives = 210/420 (50%), Gaps = 42/420 (10%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D    G W  +D         +++ VKASGLRGRGGAGF TG+KW  +    SD   
Sbjct: 104 SLQDYADHGGWRGLDAARAMAPQAVVDAVKASGLRGRGGAGFPTGIKWQTVLDAVSDA-K 162

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           ++V NADE + GT  DR +M  +P  LIEG  IA  A+GA   +IY+R E+     +++ 
Sbjct: 163 FIVCNADEGDSGTFADRMLMEGDPFCLIEGMAIAGHAVGAGHGYIYIRSEYPFAIAAMRE 222

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+        L +     + +++ V  GAGAY+CGEETALL+S+EGK+GQ R KPP PA 
Sbjct: 223 AI-------ALSAERIAPFTLEVRV--GAGAYVCGEETALLDSIEGKRGQVRAKPPLPAL 273

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT +NNV S+A VP IL  GA  Y+  G   +RGT    ++G+V +    E   
Sbjct: 274 SGLFGQPTVINNVLSLAAVPFILAEGAEAYAAVGFGRSRGTMPVQLAGNVKHGGLYEIGF 333

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  EL+    GG   G   + AV  GG      P   M     DY+   + G  +G A
Sbjct: 334 GITLGELVNGIGGGTASGR-PVRAVQVGGPLGAYFPP-SMFDLPFDYEAFAQAGGLIGHA 391

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV------------ 366
            + + D   D+         F   ESCG+CTPCR G+   + VM+R++            
Sbjct: 392 GITLFDDMVDMAHMARFAMEFCAVESCGKCTPCRIGSTRGVEVMDRIIAARDSAPAVPAG 451

Query: 367 ---KGIAQK---------------REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
              +G  QK                +  LL ++   ++  ++CALG    +P+   + +F
Sbjct: 452 RQWEGYLQKALNSRTPDRIDTGLEAQTALLRDLCDTMKHGSLCALGGFTPYPVLSALDHF 511


>gi|163746082|ref|ZP_02153441.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45]
 gi|161380827|gb|EDQ05237.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45]
          Length = 570

 Score =  226 bits (576), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 142/376 (37%), Positives = 208/376 (55%), Gaps = 22/376 (5%)

Query: 36  LEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           L  G DW  +  ++  +GLRG GGAGF +G KW F+    +  P YL VN DE EPGT K
Sbjct: 210 LRAGGDWGAVQEQLLEAGLRGFGGAGFPSGKKWGFV--RANPGPRYLAVNGDEGEPGTFK 267

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           DR  +   PH  +EG +IA++A+ A   F+Y+R E+    E L+  +     +G++    
Sbjct: 268 DRWYLERTPHLFLEGMLIAAWAVEAEKVFLYMRDEYPAVLEILRREIAALENAGVIAP-- 325

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             GY   + +  GAGAYICGEE+A++ES+EGK+G PR +PP+ A VG++G PT V+N+E+
Sbjct: 326 --GY---VDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPYVAQVGVFGRPTLVHNIET 380

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           +  +  I R G    +   +   +G + +S+SG V  P         T  + I    GG+
Sbjct: 381 LHWIARICREGPQVLNATEKNGRKGLRSYSVSGRVAEPGMYVLPAGSTITD-ITAAAGGM 439

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
             G     A  PGG S   LPA  M    +D+D L+  GS +G+AAV+V+        A 
Sbjct: 440 AEG-HVFKAYQPGGPSSGLLPA-SMNDLPLDFDTLQPHGSFIGSAAVVVLSEHDSARAAA 497

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDLLYEVSKNIEGRTICA 392
             +  F++ ESCGQCTPCR G        E+ VK + + R +  LL E+S  +   +IC 
Sbjct: 498 LNMLRFFEDESCGQCTPCRVGC-------EKAVKLMQEDRWDQGLLEELSTAMVDASICG 550

Query: 393 LGDAAAWPIQGLIKNF 408
           LG AA  PI+ ++K+F
Sbjct: 551 LGQAAPNPIRLVMKHF 566


>gi|284030068|ref|YP_003379999.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Kribbella flavida DSM 17836]
 gi|283809361|gb|ADB31200.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Kribbella flavida DSM 17836]
          Length = 565

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 219/416 (52%), Gaps = 17/416 (4%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRG--HWDNVDKIL--EKGRDWIINEVKASGLRGRGGAG 59
           D+D      Y   G   +D  + G  H+ ++  +L  +   D +I  ++ +GLRG GGAG
Sbjct: 146 DRDLGAVAAYVPDGGWPNDPYASGEHHYRSLRALLSGQLSADEVITALQDAGLRGMGGAG 205

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  + +       Y + NADESEPGT KDR ++  +PH ++EG ++     GA 
Sbjct: 206 FPTGKKWELV-RAAEGAVKYAICNADESEPGTFKDRQLLAEQPHLVLEGLLMGMLVTGAE 264

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             ++++R E+  E   L + +      GL+G +    G  + + +    G YI GEETAL
Sbjct: 265 EGWVFIRHEYGPEEAVLHSEIGRLREQGLIGPDVLGTGRRLMLDIFTSPGGYILGEETAL 324

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LE +EG +G+PR KPPFP N GL+G PT +N+VE+ A VP I+ RGA W++  G     G
Sbjct: 325 LECMEGHRGEPRNKPPFPGNYGLWGKPTLMNSVETFADVPAIVARGADWWNAQGVNGATG 384

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
            K F++SGHV  P      M  T  +LI+   GG+ GG + L AV PGG+S   L    +
Sbjct: 385 LKFFAVSGHVERPGVYCVPMGTTIRDLIDV-AGGVAGGAE-LEAVQPGGASSNFLGPEHL 442

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D+  L E GS LG+ A++VM   TD + A   +  F+++ESCG+C PCR G+   
Sbjct: 443 D-VPLDFGTLAEAGSMLGSGAMVVMAAGTDALAAATNVLRFFRNESCGKCVPCRVGS--- 498

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEG-----RTICALGDAAAWPIQGLIKNFR 409
            +  + L   +    E+D   +             +IC LG  A  P+  ++   R
Sbjct: 499 TKAHDLLTDTLRSGGELDEARKARLLELELVLRKSSICGLGQVALGPVVSVLGRQR 554


>gi|164430970|gb|ABY55757.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Drosophila
           silvestris]
          Length = 222

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/174 (60%), Positives = 128/174 (73%), Gaps = 1/174 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +I+ KG +WIINEVK SGLRGRGGAGF 
Sbjct: 49  LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPEWIINEVKTSGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA  A+GA  A
Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 168

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGE 174
           +IY+RGEF  E  ++Q A+ E Y +GL+G ++   GY+ D+ +H GAGAYICGE
Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKDACGTGYNFDVFMHRGAGAYICGE 222


>gi|254476787|ref|ZP_05090173.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11]
 gi|214031030|gb|EEB71865.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11]
          Length = 576

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 152/391 (38%), Positives = 220/391 (56%), Gaps = 31/391 (7%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L D  + G W+ V             +VK +GLRG GGAGF +G KW F+    ++ P 
Sbjct: 212 TLKDLRANGDWEAVQA-----------KVKEAGLRGLGGAGFPSGTKWGFV--RANEGPR 258

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  AFIY+R E+    E L+ 
Sbjct: 259 YLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEILRR 318

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            +     +G++    + GY   I +  GAGAYICGEE+A++ES+EGK+G+PR +PPF A 
Sbjct: 319 EIKALEDAGIV----EAGY---IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFVAQ 371

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VG++G PT V+NVE++  V  I R G    +   +   +G + +S+SG V  P       
Sbjct: 372 VGIFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLLPA 431

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
             T  ++IE  CGG+  G     A  PGG S   LPA  M    +D+D L+  G+ +G+A
Sbjct: 432 GSTITDIIEA-CGGMLEG-HTFKAYQPGGPSSGLLPA-SMHDVPLDFDTLQPHGTFIGSA 488

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDL 377
           AV+V+        A   +  F++ ESCGQCTPCR G        E+ VK +++K+ +  L
Sbjct: 489 AVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMSEKKWDQGL 541

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L E+S  +   +IC LG AA  PI+  +K+F
Sbjct: 542 LEELSTAMVDASICGLGQAAPNPIRLTMKHF 572


>gi|149914433|ref|ZP_01902964.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b]
 gi|149811952|gb|EDM71785.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b]
          Length = 574

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 194/349 (55%), Gaps = 18/349 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+       P YL VN DE EPGT KDR  +  +PH  +EG +IA++A+ A 
Sbjct: 240 FPSGRKWGFV--RAEKGPRYLAVNGDEGEPGTFKDRFYLERQPHVFLEGMLIAAWAVEAE 297

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             FIY+R E+    E L+  +     +G++      GY   I +  GAGAYICGEE+A++
Sbjct: 298 TCFIYMRDEYPAVLEILRREIAALETAGVVAP----GY---IDLRRGAGAYICGEESAMI 350

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR +PPF A VG++  PT VNNVE++  V  +LR G    S   R   +G 
Sbjct: 351 ESIEGKRGLPRHRPPFVAQVGIFDRPTLVNNVETLYWVTRVLREGKEILSDVERNGRKGL 410

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG VN P         T  ++IE   G + G   +  A  PGG S   LPA  M 
Sbjct: 411 RSYSVSGRVNKPGVHLLPAGSTITDIIEAAGGMLEG--HSFKAYQPGGPSSGLLPA-SMN 467

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D L+  G+ +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +
Sbjct: 468 DIPLDFDTLQPHGTFIGSAAVVVLSDKDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAV 527

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++M+      A + +  LL E+ + +   +IC LG AA  PI+  +K+F
Sbjct: 528 KLMQ------ADRWDQPLLEELCQAMGDASICGLGQAAPNPIRLTMKHF 570


>gi|254464678|ref|ZP_05078089.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I]
 gi|206685586|gb|EDZ46068.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I]
          Length = 562

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/394 (38%), Positives = 225/394 (57%), Gaps = 23/394 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           ++ +D  + G +  +  +   G DW  +  +VK +GLRG GGAGF +G KW F+    ++
Sbjct: 185 ETFADYEAEGGYAALKDLRANG-DWEAVQAKVKEAGLRGLGGAGFPSGTKWGFV--RANE 241

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  AFIY+R E+    E 
Sbjct: 242 GPRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEI 301

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L+  +     +G++    + GY   I +  GAGAYICGEE+A++ES+EGK+G+PR +PPF
Sbjct: 302 LRREIKALEEAGIV----EAGY---IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPF 354

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A VG++G PT V+NVE++  V  I R G    +   +   +G + +S+SG V  P    
Sbjct: 355 VAQVGVFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKKPGVHL 414

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  ++IE  CGG+  G     A  PGG S   LPA  M    +D+D L+  G+ +
Sbjct: 415 LPAGSTITDIIEA-CGGMLDG-HAFKAYQPGGPSSGLLPA-SMNDIPLDFDTLQPHGTFI 471

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-E 374
           G+AAV+V+        A   +  F++ ESCGQCTPCR G        E+ VK +++K+ +
Sbjct: 472 GSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMSEKKWD 524

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             LL E+S  +   +IC LG AA  PI+  +K+F
Sbjct: 525 QGLLEELSTAMVDASICGLGQAAPNPIRLTMKHF 558


>gi|84499616|ref|ZP_00997904.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Oceanicola batsensis HTCC2597]
 gi|84392760|gb|EAQ04971.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Oceanicola batsensis HTCC2597]
          Length = 505

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/391 (35%), Positives = 200/391 (51%), Gaps = 6/391 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL+D    G    + + L      I+ EVK SGLRGRGGAGF TG+KW  + +  +++  
Sbjct: 108 SLADYEGHGGLAGLRRALGMEAAAIVEEVKTSGLRGRGGAGFPTGIKWDTVRQARAEQ-K 166

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P +LIEG +IA    GA   F+Y+R E+      +  
Sbjct: 167 YIVCNADEGDSGTFADRMIMEGDPFSLIEGMIIAGLGTGATKGFVYIRSEYPDAIAIMDR 226

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+      GLLG +    G   ++ V  GAGAY+CGEET+LL SLEGK+G  R KPP PA
Sbjct: 227 AIRLARDGGLLGPDILGSGRAFEMEVRIGAGAYVCGEETSLLNSLEGKRGVVRAKPPLPA 286

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G +G PT VNNV S+A +P I  +GA  Y+ FG   +RGT    I+G+V +    E +
Sbjct: 287 LQGAFGRPTVVNNVLSLATIPVIFEKGAQHYADFGLGRSRGTMPIQIAGNVQHGGLYETA 346

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +    L+ +  GG   G    +  +  G  +    A         Y+     G  +G 
Sbjct: 347 FGLPLGTLVNEIAGGTASG--RPVKAVQVGGPLGAYFAPHQFDTPFGYEEFDGAGGLIGH 404

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A ++V D + D+         F   ESCG+CTPCR G    +  ++R+  G      I  
Sbjct: 405 AGIVVFDDTADMAGMARFAMEFCAVESCGKCTPCRIGAVRGVETIDRIAAGDPDATAI-- 462

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L ++ + +   ++CALG    +P+   +  F
Sbjct: 463 LTDLCETMTAGSLCALGGFTPYPVMSALHLF 493


>gi|163736779|ref|ZP_02144197.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107]
 gi|161389383|gb|EDQ13734.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107]
          Length = 576

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 152/391 (38%), Positives = 219/391 (56%), Gaps = 31/391 (7%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L D  + G W+ V             +VK +GLRG GGAGF +G KW F+    ++ P 
Sbjct: 212 TLKDLRANGDWEAVQA-----------KVKEAGLRGLGGAGFPSGTKWGFV--RANEGPR 258

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  AFIY+R E+    E L+ 
Sbjct: 259 YLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEILRR 318

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            +     +G++    + GY   I +  GAGAYICGEE+A++ES+EGK+G+PR +PPF A 
Sbjct: 319 EITALEEAGIV----EAGY---IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFVAQ 371

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VG++G PT V+NVE++  V  + R G    +   +   +G + +S+SG V  P       
Sbjct: 372 VGIFGRPTLVHNVETLYWVCKVNREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLLPA 431

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
             T  ++IE  CGG+  G     A  PGG S   LPA  M    +D+D L+  G+ +G+A
Sbjct: 432 GSTITDIIEA-CGGMLDG-HAFKAYQPGGPSSGLLPA-SMHDIPLDFDTLQPHGTFIGSA 488

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDL 377
           AV+V+        A   +  F++ ESCGQCTPCR G        E+ VK + +K+ +  L
Sbjct: 489 AVVVLSDKDSARDAALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMGEKKWDQGL 541

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L E+S  +   +IC LG AA  PI+  IK+F
Sbjct: 542 LEELSAAMVDTSICGLGQAAPNPIRLTIKHF 572


>gi|259415017|ref|ZP_05738939.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter sp. TrichCH4B]
 gi|259348927|gb|EEW60681.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter sp. TrichCH4B]
          Length = 580

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 134/349 (38%), Positives = 199/349 (57%), Gaps = 18/349 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+    ++ P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A 
Sbjct: 246 FPSGKKWGFV--RANEGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAE 303

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            AFIY+R E+    E L+  +     +G++    + GY   I +  GAGAYICGEE+A++
Sbjct: 304 KAFIYMRDEYPAVLEILRREIRALEEAGIV----EAGY---IDLRRGAGAYICGEESAMI 356

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G+PR +PPF A VG++G PT V+NVE++  +  I R G    +   +   +G 
Sbjct: 357 ESIEGKRGEPRHRPPFVAQVGIFGRPTLVHNVETLYWIAKINREGPECLNTVEKNGRKGL 416

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P         T  ++IE   G + G   +  A  PGG S   LPA  M 
Sbjct: 417 RSYSVSGRVKNPGVHLLPAGSTILDVIEAAGGMLDG--HSFKAYQPGGPSSGLLPA-HMN 473

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D L+  GS +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +
Sbjct: 474 DIPLDFDTLQPHGSFIGSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAV 533

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++M+      A+K +  LL E+S+ +   +IC LG AA  PI+  +K+F
Sbjct: 534 KLMQ------AEKWDQSLLEELSQTMVDASICGLGQAAPNPIRLTMKHF 576


>gi|73538415|ref|YP_298782.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
 gi|72121752|gb|AAZ63938.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
          Length = 414

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/402 (35%), Positives = 215/402 (53%), Gaps = 7/402 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS-D 75
           G  L   ++RG  + + K L    D I+ E++ + LRG GGAGF T  KW  +    + D
Sbjct: 16  GADLQAWLARGGGEGLAKALSN-PDAILAEIEQADLRGMGGAGFPTHRKWRPVAAAAAVD 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +  Y++ N +E EPGT KDR ++ H PH +IEG +IA+ A  A+   +YV        E 
Sbjct: 75  K--YIICNGNEDEPGTFKDRFLLEHTPHQVIEGALIAAAATRANHVVLYVNPHQPLSLEM 132

Query: 136 LQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            + AV +      L    +L G  + + V   +G YI GEETA++ S+EG    PR KPP
Sbjct: 133 TRQAVQQWQTHAQLAELERLLGGPLTLRVVPSSGLYIGGEETAVIASVEGTFPFPRRKPP 192

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           +PA+ G++G PT VNN E++A VP ILR GA WY   G     GTKL+S+SG V  P   
Sbjct: 193 YPADSGVHGAPTIVNNTETLAHVPGILRHGAQWYRALGVAQAAGTKLYSLSGDVLRPGLY 252

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  + + LI +  GG+  G +   AV  GG S   L    +  A +D+D +++  S 
Sbjct: 253 ELPMGTSLETLIFEFGGGMLQGKE-FKAVFTGGPSNTLLTKRDLDVA-LDFDSVRKRRSR 310

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   + I++ +     F+   SCGQC PC+ GT  +MR++ R+  G   + +
Sbjct: 311 LGTGAMIVVSEGSSIVRKVAEYVSFFAQGSCGQCPPCKGGTFQLMRLLNRIDTGRGVRAD 370

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ L  + + + G   C L D A   +   +  FR   E ++
Sbjct: 371 LEALENLCRILPGSGRCGLIDGAVTVVDSSLHQFRDEYESQL 412


>gi|99078169|ref|YP_611427.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
 gi|99035307|gb|ABF62165.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
          Length = 562

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 133/349 (38%), Positives = 198/349 (56%), Gaps = 18/349 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+    ++ P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A 
Sbjct: 228 FPSGKKWGFV--RANEGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAE 285

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            +FIY+R E+    E L+  +     +G++    + GY   I +  GAGAYICGEE+A++
Sbjct: 286 RSFIYMRDEYPAVLEILRREIRALEEAGIV----EAGY---IDLRRGAGAYICGEESAMI 338

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G+PR +PPF A VG++G PT V+NVE++  +  I R G    +   +   +G 
Sbjct: 339 ESIEGKRGEPRHRPPFVAQVGIFGRPTLVHNVETLYWIAKINREGPECLNAVEKNGRKGL 398

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P         T  ++IE   G + G      A  PGG S   LPA  M 
Sbjct: 399 RSYSVSGRVQNPGVHLLPAGSTILDVIEAAGGMLEGHL--FKAYQPGGPSSGLLPA-HMN 455

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D L+  GS +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +
Sbjct: 456 DIPLDFDTLQPHGSFIGSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAV 515

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++M+      A+K +  LL E+S+ +   +IC LG AA  PI+  +K+F
Sbjct: 516 KLMQ------AEKWDQSLLEELSQTMVDASICGLGQAAPNPIRLTMKHF 558


>gi|118579913|ref|YP_901163.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118502623|gb|ABK99105.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
          Length = 570

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 144/406 (35%), Positives = 230/406 (56%), Gaps = 9/406 (2%)

Query: 18  KSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +SL++ ++ G +    K  LE   + I  EV ASGLRGRGG GF TG KW  + ++    
Sbjct: 146 ESLNEYIATGGYGGAIKAFLEMTPEEICREVIASGLRGRGGGGFPTGRKWE-IARMQPAE 204

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ N DE +PG   +R +M   PH +IEG +IA+ AIG+   ++YVR E+    + +
Sbjct: 205 KKYVICNGDEGDPGAFMNRSVMEGNPHAVIEGLMIAARAIGSDEVYVYVRAEYPLAVKRM 264

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             AV++  A+G+LG+N    G  +   +   AGA++CGEETA+L S+EG +G P  KPPF
Sbjct: 265 NMAVEDAEAAGILGNNIFGTGKRMKCTILPSAGAFVCGEETAMLASIEGLRGTPVPKPPF 324

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL G PT +NNVE++A +P IL  GA  +   G   + GTK F+++GHV     +E
Sbjct: 325 PAQCGLRGKPTIINNVETLAQIPRILLAGAQSFKKMGTPASPGTKTFALTGHVVNTGLIE 384

Query: 256 ESMSITFDELIEKHCGGIRGG----WDNLL-AVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
                T  E++    GG+        D +  AV  GG S  CLP  ++    +D+D L  
Sbjct: 385 VPFGTTLREIVFSIGGGVTTDEGTPTDGMFKAVQVGGPSGGCLPP-ELLDMPLDFDSLLS 443

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            G+ +G+  ++VM++ T ++        F + ESCG+C  CREGT  ++ +++ +++G A
Sbjct: 444 AGAMVGSGGLVVMNQQTCMVSVARFFMEFTQRESCGKCVLCREGTRQLLVLLDDVIEGRA 503

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             + +D++  ++K+I+  ++C LG  A   +   +K FR   E  +
Sbjct: 504 TLQTLDIMELLAKSIKLGSLCGLGKTAPNAVLSTLKYFRAEFESHV 549


>gi|163794186|ref|ZP_02188158.1| Tungsten-containing formate dehydrogenase beta subunit [alpha
           proteobacterium BAL199]
 gi|159180354|gb|EDP64875.1| Tungsten-containing formate dehydrogenase beta subunit [alpha
           proteobacterium BAL199]
          Length = 582

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 129/349 (36%), Positives = 194/349 (55%), Gaps = 17/349 (4%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KWS + +     P  + VNADE EPGT KDR  +  + H ++EG +IA++ +GA 
Sbjct: 246 FPTARKWSLVRQAPG--PRLMAVNADEGEPGTFKDRWYLERDVHRMLEGMLIAAWVVGAD 303

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+      L   ++   A+GL           +I +  GAGAYICGEE+A++
Sbjct: 304 AVYIYLRDEYPEIHAILIEEIEALTAAGLASHT-------EIHLRRGAGAYICGEESAMI 356

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR +PP+ A  GL+  PT VNNVE++  V  I+ +G  W++  G+  + G 
Sbjct: 357 ESIEGKRGLPRHRPPYVAQRGLFDRPTLVNNVETLWWVRDIVEKGGEWFASLGKPGHPGL 416

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P     +  +T  ELIE+HCGG+  G       +PGG+S   LPA  M 
Sbjct: 417 RSYSVSGRVRNPGVKVVAAGVTARELIEEHCGGMLDG-HAFKGYLPGGASGGILPA-SMA 474

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L++ G  +G+ AV+++    D+      L  F++ ESCGQCTPCR GT    
Sbjct: 475 DIPLDFGQLEKHGCFVGSHAVVILSDRDDMKDVALNLMRFFEDESCGQCTPCRAGTEKAA 534

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            +M       +   +  LL E++  +   +IC LG AA  PI  ++K F
Sbjct: 535 TLMA------SGHWDQPLLEELTGVMRDASICGLGQAAGNPILSVMKFF 577


>gi|225164244|ref|ZP_03726517.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
 gi|224801149|gb|EEG19472.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
          Length = 331

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 120/252 (47%), Positives = 160/252 (63%), Gaps = 4/252 (1%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           +  G ++ + + + +  + + +EVK SG+RGRGGAGF  G+KW  + +  S +P YL+VN
Sbjct: 41  LRNGGYEILKRAVARKPEDLRDEVKKSGIRGRGGAGFPCGVKWGLVDRK-SGKPIYLIVN 99

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGT KDR I+  +PH LIEG +I+ FA     A+IY+RGE       L+ A+ E 
Sbjct: 100 ADESEPGTFKDRYIIHQDPHQLIEGTIISCFANDVKQAYIYIRGEMPEGARILERAIAEA 159

Query: 144 YASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FPANVGL 201
            A   +G N    GY  +I VH GAGAYICGEET L+ESLEGK+  PR+KPP FPA +GL
Sbjct: 160 RAKNFVGPNILGTGYSCEIYVHRGAGAYICGEETGLIESLEGKRANPRIKPPYFPAVLGL 219

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMSI 260
           Y CPT VNNVE++  V   +  G   Y+  G  NN GT++F +SGHV  P   E E+  I
Sbjct: 220 YQCPTIVNNVETLCHVKHAIDIGGDNYAKIGTPNNTGTRIFCVSGHVQRPGYYEFEAGKI 279

Query: 261 TFDELIEKHCGG 272
           T  +L+   CGG
Sbjct: 280 TMGQLLNDVCGG 291


>gi|163743705|ref|ZP_02151080.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161383072|gb|EDQ07466.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis
           2.10]
          Length = 576

 Score =  223 bits (567), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 137/350 (39%), Positives = 199/350 (56%), Gaps = 20/350 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+    ++ P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A 
Sbjct: 242 FPSGTKWGFV--RANEGPRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAE 299

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            AFIY+R E+    E L+  +     +G++    + GY   I +  GAGAYICGEE+A++
Sbjct: 300 KAFIYMRDEYPAVLEILRREIAALEEAGIV----EAGY---IDLRRGAGAYICGEESAMI 352

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G+PR +PPF A VG++G PT V+NVE++  V  + R G    +   +   +G 
Sbjct: 353 ESIEGKRGEPRHRPPFVAQVGIFGRPTLVHNVETLYWVCKVNREGPECLNSVEKNGRKGL 412

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P         T  ++IE  CGG+  G     A  PGG S   LPA  M 
Sbjct: 413 RSYSVSGRVKNPGVHLLPAGSTITDIIEA-CGGMLDG-HAFKAYQPGGPSSGLLPA-SMH 469

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D L+  G+ +G+AAV+V+        A   +  F++ ESCGQCTPCR G     
Sbjct: 470 DIPLDFDTLQPHGTFIGSAAVVVLSDKDSARDAALNMLRFFEDESCGQCTPCRVGC---- 525

Query: 360 RVMERLVKGIAQKR-EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
              E+ VK + +K+ +  LL E+S  +   +IC LG AA  PI+  IK+F
Sbjct: 526 ---EKAVKLMGEKKWDQGLLEELSAAMVDTSICGLGQAAPNPIRLTIKHF 572


>gi|84515410|ref|ZP_01002772.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis
           SKA53]
 gi|84510693|gb|EAQ07148.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis
           SKA53]
          Length = 561

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 216/393 (54%), Gaps = 21/393 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           ++L+   + G +  ++ +  +G DW  + ++V ASGLRG GGAGF +G KW F+      
Sbjct: 184 QTLASYCADGGYAVLEHLRAQG-DWQAVQDKVLASGLRGLGGAGFPSGRKWGFVRAHAG- 241

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E+      
Sbjct: 242 -PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAQTCFIYMRDEYPAVLAI 300

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L+  +     +G++      G+   I +  GAGAYICGEE+A++ES+EGK+G PR +PPF
Sbjct: 301 LRREIAALEQAGIVAP----GF---IDLRRGAGAYICGEESAMIESIEGKRGIPRHRPPF 353

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A VGL+G PT V+NVE++  V  + R G    S   +   +G + +S+SG V  P    
Sbjct: 354 VAEVGLFGRPTLVHNVETLLWVARVCREGPDILSSVEKNGRKGLRSYSVSGRVAQPGMYV 413

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  ++I    G   G      A  PGG S   LPA  M    +D+D L+   + +
Sbjct: 414 LPAGSTITDIIAAAGGMAAG--HVFKAYQPGGPSSGLLPA-TMADVPLDFDTLQPHDTFI 470

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+AAV+V+ +      A   +  F++ ESCGQCTPCR G    +++M+      A + + 
Sbjct: 471 GSAAVVVLSQQDRARDAALNMLRFFEDESCGQCTPCRVGCQKAVQLMQ------APEWDR 524

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            LL ++   +   +IC LG AA  PI+ ++++F
Sbjct: 525 ALLGDLCTAMADASICGLGQAAPNPIRLVMRHF 557


>gi|91762193|ref|ZP_01264158.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717995|gb|EAS84645.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 552

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 211/409 (51%), Gaps = 12/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSR--GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           Q++ F+  Y      + D +S      + + K +   +  I   +  S L GRGGAGF T
Sbjct: 139 QEKFFSKSYASTSFLMDDKLSNLDQFKEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 198

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F  K  S++  Y++ NADE + G   DR ++  +P  ++ G VI  + IG+    
Sbjct: 199 GMKWDFCRKAPSEK-KYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 257

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179
           +Y+RGE+ +  E++  A++    +GLLG N   +K  +D++I +  G GAYICGEETAL+
Sbjct: 258 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICI--GQGAYICGEETALI 315

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG++ +  ++PPFP   GLY  PT VNNVE++A    IL  GA  +S  G + + GT
Sbjct: 316 ASIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGT 375

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL       N P   E  M     +++    GG +   + + A+  GG     +P  ++ 
Sbjct: 376 KLVCFDSFFNNPGVYEVEMGTPMKKVLNDIGGGFK---EPIKALQIGGPLGGVIPITEIE 432

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+      G  LG A+++ + +   +I+ I  L  F   ESCG+C P R G+ +  
Sbjct: 433 KLNLDFQEFTAAGFMLGHASIVSIPKDFPMIEYIHHLFEFSAEESCGKCFPGRLGS-YRG 491

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + M    K    K  + LL E+   ++   +CAL  A   PI  ++K F
Sbjct: 492 KEMFDQAKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYF 540


>gi|71062496|gb|AAZ21499.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 509

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 211/409 (51%), Gaps = 12/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDN--VDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           Q++ F+  Y      + D +S     N  + K +   +  I   +  S L GRGGAGF T
Sbjct: 96  QEKFFSKSYASTSFLMDDKLSNLDQFNEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 155

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F  K  S++  Y++ NADE + G   DR ++  +P  ++ G VI  + IG+    
Sbjct: 156 GMKWDFCRKAPSEK-KYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 214

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179
           +Y+RGE+ +  E++  A++    +GLLG N   +K  +D++I +  G GAYICGEETAL+
Sbjct: 215 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICI--GQGAYICGEETALI 272

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG++ +  ++PPFP   GLY  PT VNNVE++A    IL  GA  +S  G + + GT
Sbjct: 273 ASIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGT 332

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL       N P   E  M     +++    GG +   + + A+  GG     +P  ++ 
Sbjct: 333 KLVCFDSFFNNPGVYEVEMGTPMKKVLNDIGGGFK---EPIKALQIGGPLGGVIPITEIE 389

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+      G  LG A+++ + +   +++ I  L  F   ESCG+C P R G+ +  
Sbjct: 390 KLNLDFQEFTAAGFMLGHASIVSIPKDFPMVEYIHHLFEFSAEESCGKCFPGRLGS-YRG 448

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + M    K    K  + LL E+   ++   +CAL  A   PI  ++K F
Sbjct: 449 KEMFDQAKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYF 497


>gi|304570556|ref|YP_266102.2| NAD-dependent formate dehydrogenase subunit beta [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 552

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 211/409 (51%), Gaps = 12/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDN--VDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           Q++ F+  Y      + D +S     N  + K +   +  I   +  S L GRGGAGF T
Sbjct: 139 QEKFFSKSYASTSFLMDDKLSNLDQFNEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 198

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F  K  S++  Y++ NADE + G   DR ++  +P  ++ G VI  + IG+    
Sbjct: 199 GMKWDFCRKAPSEK-KYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 257

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179
           +Y+RGE+ +  E++  A++    +GLLG N   +K  +D++I +  G GAYICGEETAL+
Sbjct: 258 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICI--GQGAYICGEETALI 315

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG++ +  ++PPFP   GLY  PT VNNVE++A    IL  GA  +S  G + + GT
Sbjct: 316 ASIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGT 375

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL       N P   E  M     +++    GG +   + + A+  GG     +P  ++ 
Sbjct: 376 KLVCFDSFFNNPGVYEVEMGTPMKKVLNDIGGGFK---EPIKALQIGGPLGGVIPITEIE 432

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+      G  LG A+++ + +   +++ I  L  F   ESCG+C P R G+ +  
Sbjct: 433 KLNLDFQEFTAAGFMLGHASIVSIPKDFPMVEYIHHLFEFSAEESCGKCFPGRLGS-YRG 491

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + M    K    K  + LL E+   ++   +CAL  A   PI  ++K F
Sbjct: 492 KEMFDQAKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYF 540


>gi|110634769|ref|YP_674977.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mesorhizobium sp. BNC1]
 gi|110285753|gb|ABG63812.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Chelativorans sp. BNC1]
          Length = 557

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 198/350 (56%), Gaps = 17/350 (4%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G KW  +       P  + +N DE EPGT KDR  +  +PH   EG +IA++A+ A 
Sbjct: 220 FPAGKKWQIVRSYPG--PRLMSINGDEGEPGTFKDRIYLERDPHRTFEGALIAAYAVEAE 277

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             + Y+R E+      L+A +    A+G++           I +  GAGAYICGEE+A+L
Sbjct: 278 RIYFYMRDEYPAVLAILRAEIAALEAAGIVAPGF-------IELRRGAGAYICGEESAML 330

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EG++G PR +PP+ A VGL+G PT  +NVE++  +  I+ +G  W++G G+  + G 
Sbjct: 331 ESIEGRRGMPRHRPPYIAEVGLFGRPTLNHNVETLWWIRDIVEKGPDWFAGLGKPGHPGV 390

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P        +T   LIE +CGG+  G +   A +PGG+S   LPA  + 
Sbjct: 391 RSWSVSGRVKEPGVKLAPAGVTARGLIEDYCGGMADGHE-FKAYLPGGASGGILPAA-LG 448

Query: 300 GAIMDYDG-LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              +D+ G L + GS +G+ AV+V  ++ ++      L  F+KHESCG+CTPCREGT  M
Sbjct: 449 DIPLDFGGELAKQGSFVGSHAVVVFSQADNLKDVTLNLMNFFKHESCGKCTPCREGTEKM 508

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + +++    G  ++  I  L  V ++    +IC LG AA  P+  L+ +F
Sbjct: 509 VTLLKE--PGPLRETAIRDLETVMRD---SSICGLGQAAPNPVNHLLTHF 553


>gi|295699179|ref|YP_003607072.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002]
 gi|295438392|gb|ADG17561.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002]
          Length = 414

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/394 (37%), Positives = 212/394 (53%), Gaps = 5/394 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           G  L    +RG  + + K L+   + II E+  + LRG GGAGF    KW+ +     D 
Sbjct: 16  GADLDAWFARGGGEGLAKALDD-PEAIIAELAQADLRGMGGAGFPAHRKWAPV-AAAPDG 73

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N +E EPGT KDR ++ H PH +IEG +IA+ A  A+   +YV         + 
Sbjct: 74  DKYVVCNGNEDEPGTFKDRFLLEHTPHQVIEGALIAAVATRANHVVLYVNPHQTSSLAAT 133

Query: 137 QAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + AV++        +  + +G  + + V   +G YI GEETA++ S+EG    PR KPPF
Sbjct: 134 REAVEQWSGHPQFAAVERWIGAPLSLGVVPSSGLYIGGEETAVIASVEGGFPFPRRKPPF 193

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G++G PT VNNVE++A VP ILR GA WY   G  N  GTKL+S+SG V  P   E
Sbjct: 194 PAEQGVHGAPTIVNNVETLAHVPGILRHGAQWYRELGVGNAAGTKLYSLSGDVLRPGLYE 253

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  + + L+ +H GG+  G     AV  GG S   L    +  A +D+D +++  S L
Sbjct: 254 LPMGTSLETLVFQHGGGMLQG-KEFKAVFTGGPSNTLLTKRDLDVA-LDFDSVRQRRSRL 311

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+IV+   T I++ +     F+   SCGQC PC+ GT  MMR++ RL  G   + ++
Sbjct: 312 GTGAMIVVSEGTSIVRKVADYVNFFAQGSCGQCPPCKGGTFQMMRLLNRLDTGRGVRADL 371

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           D L  + + + G   C L D A   ++  I  FR
Sbjct: 372 DALENLCRVLPGSGRCGLIDGAVTVVESSIDQFR 405


>gi|82702794|ref|YP_412360.1| hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196]
 gi|82410859|gb|ABB74968.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Nitrosospira multiformis ATCC 25196]
          Length = 598

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/390 (33%), Positives = 206/390 (52%), Gaps = 22/390 (5%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESE 88
           +   L +G D  + E+K S LRGRGGAG++T  KW+     C D      Y+V NADE E
Sbjct: 194 IRATLMRGADATLGELKLSRLRGRGGAGYATADKWT----ACRDSEGTARYIVCNADEGE 249

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR ++      + EG  + +  +G+   F+Y+RGE+    + L+  +     + L
Sbjct: 250 PGTFKDRVLLNRYADMVFEGMTVGARLLGSTKGFLYLRGEYQYLLKKLEEVLARRCEARL 309

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           LG++   + G+D DI +H GAGAYICGEE+AL+ESLEG++G+PR +PP+PA  G    PT
Sbjct: 310 LGTDILGEPGFDFDIEIHLGAGAYICGEESALIESLEGRRGKPRNRPPYPAQHGYLDQPT 369

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVE+ A    I   G  W+   G   + G+K+ SI+G    P   E    ++  E++
Sbjct: 370 VVNNVETFACSAMIAVHGGKWFGETGTWESSGSKILSIAGDCTLPGIYEYPFGVSVREIL 429

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           +  C       +   AV  GG S   +   +   +I  +D L   G      A  +  R 
Sbjct: 430 QD-CAA-----EEAYAVQVGGPSGILVSWKEFERSI-SFDDLPTAG------AFTIFGRG 476

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
            DI++A+   + F+ HESCG CTPCR GT    ++++++  G     +++ L  +   + 
Sbjct: 477 RDILEAVRNYAHFFAHESCGFCTPCRVGTQLQKKLVDKIADGHGTASDLEELKHLGHLMR 536

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             + C LG  A  P+  +++ F    E+++
Sbjct: 537 TMSHCGLGHTAPNPVLDMLEKFPGAYEQKL 566


>gi|320450369|ref|YP_004202465.1| respiratory chain oxidoreductase [Thermus scotoductus SA-01]
 gi|320150538|gb|ADW21916.1| respiratory chain oxidoreductase [Thermus scotoductus SA-01]
          Length = 490

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 138/369 (37%), Positives = 203/369 (55%), Gaps = 40/369 (10%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I+  V+ +GL GRGGA F   +K   + +   + P YLVVNADESEPG  KDR ++ H
Sbjct: 154 EAILEAVEEAGLLGRGGAAFPAHIKMRAVAR--GEPPRYLVVNADESEPGNFKDRYLLEH 211

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            P  ++EG ++A+ A+GA   F+YVR EF      L+ A+ +   +GLL         V 
Sbjct: 212 HPFLVLEGTLLAALAVGASQVFLYVRDEFEAAILGLEKAIHQLEEAGLL--------PVP 263

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
             V    G YICGEETALLES+EGK+ +PRLKPPFP   GL+G PT V NVE++A +P I
Sbjct: 264 TQVFTSGGLYICGEETALLESMEGKRAEPRLKPPFPVERGLWGRPTLVQNVETLANLPLI 323

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           LR G     G  RE     KLFSI+G V  P   E  +  + ++ + K  G   G    L
Sbjct: 324 LREG----PGTWREKE--PKLFSITGDVARPGLYELPLGTSLEDALRKAEGEPEG----L 373

Query: 281 LAVIPGGSSVPCLPAGQMR---GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
            AV+ GG+      AG         + Y G   +G+G    A++   +  D+ + +  L+
Sbjct: 374 KAVLLGGA------AGVFTRDFAFPLRYKGRLPLGAG----AIVAFGKEVDLWEVLLGLA 423

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F++ ESCG+C PC  GT   + ++ R      ++R  DL++ + + ++G ++C LG +A
Sbjct: 424 EFFREESCGKCFPCPLGTAVQVEMVRR------RERNRDLVHHLGQALKG-SLCGLGQSA 476

Query: 398 AWPIQGLIK 406
            W  Q L++
Sbjct: 477 YWAYQSLLE 485


>gi|169334685|ref|ZP_02861878.1| hypothetical protein ANASTE_01088 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257423|gb|EDS71389.1| hypothetical protein ANASTE_01088 [Anaerofustis stercorihominis DSM
           17244]
          Length = 416

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/405 (32%), Positives = 217/405 (53%), Gaps = 8/405 (1%)

Query: 7   RIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           +  T  YG   G ++ + + RG +  + K + +G +  + +V  SGL+GRGGA + TG K
Sbjct: 5   KYITKDYGTYDGFNIDEYIKRGGFKGLKKSILQGYEKTVKDVSDSGLQGRGGANYPTGRK 64

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
            +   +   +   Y++ NADE EPGT KD+ ++++  + +IEG +I++F  GA+  +IYV
Sbjct: 65  LTQAREAKGNGDRYILCNADEGEPGTFKDKYLLQNGIYKVIEGIIISAFCAGANKGYIYV 124

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           R E+    + ++ A+ + Y  G LG +    G+D D+ +  G G+Y+CGE  A+ ES+EG
Sbjct: 125 REEYTFMHKDIEFAIKQVYDKGFLGEDILSSGFDFDLSLFSGGGSYVCGEGFAMCESIEG 184

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K G+PR KPP+    GL+  PT V NVE+++V+ T+++ G      +G E+  GTK+  +
Sbjct: 185 KSGRPRSKPPYVKECGLHNKPTLVINVETVSVIATMMQNGFKTVLKYGVEDCPGTKMVCV 244

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V +P   E     T   +I+   G   G     + +  GG+S   +P  ++      
Sbjct: 245 SGKVKHPGVYEVEFGTTVQNIIKIAGGIKGGKKAKFVQI--GGASGVIVPYEKLN-IPYT 301

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           Y G+K++   +G+ A++V D    +I  +  +  F+ HE CG+C PCREG   + ++M+R
Sbjct: 302 YSGMKKVKGNIGSGAIVVADEDDSVIDYLSVVEDFFFHECCGKCVPCREGNRQLKKIMDR 361

Query: 365 LVKGIAQKREIDLL-YEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
               I Q    DL  Y    N    ++C  G A   P      NF
Sbjct: 362 F--KIKQGTLTDLKNYVRIVNALDASLCGSGKAQIIPFISAYTNF 404


>gi|119899329|ref|YP_934542.1| formate dehydrogenase (NADP+) subunit beta [Azoarcus sp. BH72]
 gi|119671742|emb|CAL95655.1| probable formate dehydrogenase (NADP+), beta subunit [Azoarcus sp.
           BH72]
          Length = 571

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 145/396 (36%), Positives = 209/396 (52%), Gaps = 31/396 (7%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           G  L +S+ RG  D          + ++  +  + LRG GGAGF    KW  +  +    
Sbjct: 186 GYRLYESVVRGEHDA---------EEVLGVLDTAILRGLGGAGFPAARKWRTV--MAQPA 234

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P  + VN DE EPGT KDR  +  +PH  +EG +IA+  +G    +IY+R E+   R  L
Sbjct: 235 PRNMAVNIDEGEPGTFKDRHYLGRDPHRFLEGMLIAARVVGISAIWIYIRDEYPALRRML 294

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A +D+  A+       +L          GAGAYICGEE+A++ES+EGK+G PRL+PP+ 
Sbjct: 295 LAELDKLRAAWPDLPPVEL--------RRGAGAYICGEESAMIESIEGKRGMPRLRPPYV 346

Query: 197 ANVGLYGCPTTVNNVESI----AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           A VGL+G PT V+N E++     +V   L +GA W  G GR   RG + FS+SG V  P 
Sbjct: 347 AEVGLFGRPTLVHNPETLWWVRDIVTAGLVQGAQWLEGRGRNGRRGLRSFSVSGRVAKPG 406

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            V     IT  +L+++HCGG+  G + L    PGG+S   LPA  +    +D+D L   G
Sbjct: 407 VVVTDAGITLRQLVDEHCGGMLPGHE-LYGYFPGGASGGILPA-SLADVPLDFDTLAPYG 464

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
             +G+AA++V  +             F+ HESCGQCTPCR GT     +M       A  
Sbjct: 465 CFIGSAAIVVFSQHDQARVLAENAMHFFAHESCGQCTPCRVGTAKAADLMA------APT 518

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            +  LL E+   +   +IC LG AA  P++ +++ F
Sbjct: 519 WDAGLLDELGSAMMDASICGLGQAAPNPMRSVLRYF 554


>gi|134098995|ref|YP_001104656.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911618|emb|CAM01731.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 559

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/405 (34%), Positives = 206/405 (50%), Gaps = 16/405 (3%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGM 64
            R    L GL G +       G W    + +  G    ++ EV A+GLRGRGGA +    
Sbjct: 160 SRQPVTLAGLSGDA-------GEWQVWPETVSSGDPTSVLAEVAAAGLRGRGGAEYPVAA 212

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KW  + +     P Y+VVN DE +PG+  DR +M  +PH ++EG  +A FA GAH  F++
Sbjct: 213 KWRAVAR--GPAPRYVVVNGDEGDPGSYCDRLLMEADPHRVLEGLALACFAAGAHRGFVF 270

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLE 183
           VR E+    + ++ AV E  ++G  G N    G+D++I V  GAG+Y+ GEETALL +L+
Sbjct: 271 VRSEYPIAVDRMRVAVAEARSAGHFGPNVHGTGFDLEIDVVQGAGSYVAGEETALLHALQ 330

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G +G  R +PP+P ++G  G PT VNNVE+IA VP ++R G   Y+  G     GTKL S
Sbjct: 331 GLRGAVRPRPPYPTSLGFEGHPTAVNNVETIATVPWVVRHGGIEYARMGTPEETGTKLVS 390

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +S     P   E        +++E   GG+R   D  L  +  G  +    A       +
Sbjct: 391 LSERFARPAVYEVEFGTPLRDIVEVLGGGLRD--DRELRAVQVGGPLGGFLAPDELDLPL 448

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
             D L + G  LG  +++ +DRS    + +  L  F   ESCG CTPCR G+   + +  
Sbjct: 449 LADALADAGVALGHGSLVAIDRSVSAPELLRHLWSFAAAESCGACTPCRVGSRRGLELAY 508

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           RL      + E   L EV       ++CA G   A  ++ L++ F
Sbjct: 509 RLAYTDTAETEHQHLLEVMGT---GSLCAFGRGVAGSVRSLLRVF 550


>gi|126740148|ref|ZP_01755837.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6]
 gi|126718603|gb|EBA15316.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6]
          Length = 566

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 150/391 (38%), Positives = 219/391 (56%), Gaps = 31/391 (7%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +L D  + G W+ V             +VK +GLRG GGAGF +G KW F+    ++   
Sbjct: 202 TLKDLRANGDWEAVQA-----------KVKEAGLRGLGGAGFPSGTKWGFV--RANEGAR 248

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL VN DE EPGT KDR  +   PH  +EG ++A++A+ A  AFIY+R E+    + L  
Sbjct: 249 YLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLMAAWAVEAEKAFIYMRDEYPAVLKILAT 308

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            +    A+G++    + GY   I +  GAGAYICGEE+A++ES+EGK+G+PR +PPF A 
Sbjct: 309 EIKALEAAGIV----EEGY---IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFVAQ 361

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VG++G PT V+NVE++  V  I R G    +   +   +G + +S+SG V  P       
Sbjct: 362 VGVFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLLPA 421

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
             T  ++IE  CGG+  G     A  PGG S   LPA  M    +D+D L+  G+ +G+A
Sbjct: 422 GSTITDIIEA-CGGMLDG-HAFKAYQPGGPSSGLLPA-SMNDVPLDFDTLQPHGTFIGSA 478

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR-EIDL 377
           AV+V+        A   +  F++ ESCGQCTPCR G        E+ VK +++K+ +  L
Sbjct: 479 AVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGC-------EKAVKLMSEKKWDQGL 531

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           L E+S  +   +IC LG AA  PI+  +K+F
Sbjct: 532 LEELSTAMVDASICGLGQAAPNPIRLTMKHF 562


>gi|291006765|ref|ZP_06564738.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 560

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 140/405 (34%), Positives = 206/405 (50%), Gaps = 16/405 (3%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW-IINEVKASGLRGRGGAGFSTGM 64
            R    L GL G +       G W    + +  G    ++ EV A+GLRGRGGA +    
Sbjct: 161 SRQPVTLAGLSGDA-------GEWQVWPETVSSGDPTSVLAEVAAAGLRGRGGAEYPVAA 213

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KW  + +     P Y+VVN DE +PG+  DR +M  +PH ++EG  +A FA GAH  F++
Sbjct: 214 KWRAVAR--GPAPRYVVVNGDEGDPGSYCDRLLMEADPHRVLEGLALACFAAGAHRGFVF 271

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLE 183
           VR E+    + ++ AV E  ++G  G N    G+D++I V  GAG+Y+ GEETALL +L+
Sbjct: 272 VRSEYPIAVDRMRVAVAEARSAGHFGPNVHGTGFDLEIDVVQGAGSYVAGEETALLHALQ 331

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G +G  R +PP+P ++G  G PT VNNVE+IA VP ++R G   Y+  G     GTKL S
Sbjct: 332 GLRGAVRPRPPYPTSLGFEGHPTAVNNVETIATVPWVVRHGGIEYARMGTPEETGTKLVS 391

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +S     P   E        +++E   GG+R   D  L  +  G  +    A       +
Sbjct: 392 LSERFARPAVYEVEFGTPLRDIVEVLGGGLRD--DRELRAVQVGGPLGGFLAPDELDLPL 449

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
             D L + G  LG  +++ +DRS    + +  L  F   ESCG CTPCR G+   + +  
Sbjct: 450 LADALADAGVALGHGSLVAIDRSVSAPELLRHLWSFAAAESCGACTPCRVGSRRGLELAY 509

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           RL      + E   L EV       ++CA G   A  ++ L++ F
Sbjct: 510 RLAYTDTAETEHQHLLEVMGT---GSLCAFGRGVAGSVRSLLRVF 551


>gi|218660421|ref|ZP_03516351.1| NADH dehydrogenase (quinone) [Rhizobium etli IE4771]
          Length = 303

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 178/296 (60%), Gaps = 17/296 (5%)

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
           EGCVIASFA+GA+ A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHG
Sbjct: 1   EGCVIASFAMGANAAYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHG 60

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
           AGAY+CGEETALL SLEG +G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA+
Sbjct: 61  AGAYVCGEETALLNSLEGTRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAA 120

Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
           +Y  FG   +RGT    I+G++ Y    E +  ++  +++++  GG   G   + AV  G
Sbjct: 121 FYRDFGMGRSRGTIPLQIAGNIRYGGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVG 179

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK-AIWRLSVFYKHESC 345
           G      P   +     DY+        +G A ++V D + D++K A + + +  + E  
Sbjct: 180 GPLGAYFPRA-LFDTPFDYESFAARDGLIGHAGIVVFDDTADMLKQARFAMGILRRRE-- 236

Query: 346 GQCTPCREGTGWMMRVMERLVKG-------IAQKREIDLLYEVSKNIEGRTICALG 394
                 R+      R+  R   G        +++R   LL ++  N E  ++CALG
Sbjct: 237 -----LRQVHALSHRLDARRRDGRQDRPWASSRRRTGALLADLCNNDEIGSLCALG 287


>gi|312795433|ref|YP_004028355.1| NAD-dependent formate dehydrogenase beta subunit (fdsB)
           [Burkholderia rhizoxinica HKI 454]
 gi|312167208|emb|CBW74211.1| NAD-dependent formate dehydrogenase beta subunit (fdsB) (EC
           1.2.1.2) [Burkholderia rhizoxinica HKI 454]
          Length = 540

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 145/413 (35%), Positives = 218/413 (52%), Gaps = 9/413 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L+ Q R+ F+ +  +   S+ D ++ G    + + L+         +  +GLRGRGGA F
Sbjct: 108 LSKQQRLTFSRIGLIDPLSIDDYVAHGGLQGLHRALQMAPAAACQLLIDAGLRGRGGAAF 167

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +D+  Y+V NADE + GT  DR  M  +P  LIEG +IA  + GA  
Sbjct: 168 PAGIKWRTVLQAQADQ-KYVVCNADEGDSGTFSDRLSMECDPFGLIEGMIIAGVSTGATQ 226

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+      L AA+    A+G LG +    G   D+ V  GAGAY+CGEETALL
Sbjct: 227 GYLYVRSEYPLAIARLNAAIARARAAGWLGPDVLGSGRAFDLFVAKGAGAYVCGEETALL 286

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  G  G PT +NNV ++A VP I  RG ++Y  FG   +RGT
Sbjct: 287 ESLEGKRGIVRAKPPLPALAGYRGKPTVINNVITLASVPIIFARGDAFYRDFGMGRSRGT 346

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+ +  GG   G     A+  GG     LP  Q  
Sbjct: 347 LPFQLAGNVQRGGLVEVAFGVTLRELVFEFGGGTASGRPA-RAIQVGGPLGTYLPPSQWD 405

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   ++V D + ++ +       F   ESCG+CTPCR G+    
Sbjct: 406 -VPLDYEAYTAIGAVVGHGGIVVHDDTANLAELARYAMHFCALESCGKCTPCRIGSTRGA 464

Query: 360 RVMERL----VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V+++L        A+   + LL E+   +   ++CA+G    +P+   + +F
Sbjct: 465 EVIDKLRAPEQDARARTHHVTLLRELCDTMLHGSLCAMGGMTPYPVLSALDHF 517


>gi|83955623|ref|ZP_00964203.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83839917|gb|EAP79093.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1]
          Length = 570

 Score =  219 bits (558), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 133/349 (38%), Positives = 196/349 (56%), Gaps = 18/349 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+       P Y+ VN DE EPGT KDR  +   PH  +EG +IA++A+ A 
Sbjct: 236 FPSGKKWGFVRDNAG--PRYMAVNGDEGEPGTFKDRWYLERVPHLFLEGMLIAAWAVEAE 293

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             F+Y+R E+ +    L+  +    A+G++ +    GY   I +  GAGAYICGEE+A++
Sbjct: 294 KVFLYMRDEYPQVLALLRTEIAALEAAGIVPA----GY---IDLRRGAGAYICGEESAMI 346

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR +PP+ A VG++G PT V+NVE++  V  I R G    +   +   +G 
Sbjct: 347 ESIEGKRGLPRHRPPYVAQVGIFGRPTLVHNVETLHWVARICREGPEVLNSTEKNGRKGL 406

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P   E     T  ++IE   GG+  G     A  PGG S   LPA  M 
Sbjct: 407 RSYSVSGRVAKPGMYELPAGSTITDVIEA-AGGMANG-HRFKAYQPGGPSSGLLPAA-MD 463

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D L+  GS +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +
Sbjct: 464 DIPLDFDTLQPHGSFIGSAAVVVLSDQDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAV 523

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++M+      A + +  LL E+S  +   +IC LG AA  PI+ +IK+F
Sbjct: 524 KLMQ------ADRWDKPLLEELSTAMVDASICGLGQAAPNPIRLVIKHF 566


>gi|254456591|ref|ZP_05070020.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083593|gb|EDZ61019.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 551

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/409 (32%), Positives = 209/409 (51%), Gaps = 12/409 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           Q++ F+  +      + D  S      D ++K L+  +  II  +  S L GRGGAGF T
Sbjct: 138 QEKFFSKSFATTSFLMDDKFSSTDQFKDQLNKFLKVDKKEIIKSLLDSNLTGRGGAGFPT 197

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F  K   D+  Y++ NADE + G   DR ++  +P  +I G VI    IG+    
Sbjct: 198 GMKWDFCSKAKGDK-KYVLCNADEGDSGAFSDRYLLEDQPLKVIFGMVICGLVIGSDEGV 256

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN---SKLGYDVDIIVHHGAGAYICGEETALL 179
           +Y+RGE+ +  E++   ++E     LLG N   +   +D+ I +  G GAYICGEETAL+
Sbjct: 257 LYIRGEYPKSIEAINGCINELKKLNLLGENILGTDFSFDLGICI--GQGAYICGEETALI 314

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG++ +  ++PPFP   GLY  PT VNNVE++A    IL  G+  +S  G + + GT
Sbjct: 315 ASIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGSEKFSAIGNKKSAGT 374

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL  +    N P   E  M  +  ++ E+  GG +   + + A   GG     +P  ++ 
Sbjct: 375 KLVCLDSFFNNPGVYEIDMGTSMKKIFEEIGGGYK---EAVKAFQIGGPLGGVVPLAEID 431

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+      G  LG A+V+ + +   + + I  L  F   ESCG+C P R G+    
Sbjct: 432 NLNLDFQEFTAKGFMLGHASVVSIPKDFSMSEYIHHLFEFSAEESCGKCFPGRLGSYRGK 491

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            + ++  K  A K  + LL E+   ++   +CAL  A   PI  ++K F
Sbjct: 492 EMFDQAKKKTA-KIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYF 539


>gi|85706874|ref|ZP_01037965.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217]
 gi|85668667|gb|EAQ23537.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217]
          Length = 568

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/352 (38%), Positives = 194/352 (55%), Gaps = 24/352 (6%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+       P YL VN DE EPGT KDR  +  +PH  +EG +IA++A+ A 
Sbjct: 234 FPSGRKWGFVRAEAG--PRYLAVNGDEGEPGTFKDRYYLERQPHLFLEGMLIAAWAVAAE 291

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             FIY+R E+    E L + +    A+GL+ +    GY   + +  GAGAYICGEE+A++
Sbjct: 292 RCFIYMRDEYPAVLEILASEIAALEAAGLIAA----GY---VELRRGAGAYICGEESAMI 344

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EG +G PR +PPF A VG++  PT VNNVE++  V  ILR G    +       +G 
Sbjct: 345 ESIEGNRGLPRHRPPFVAQVGIFNRPTLVNNVETLLWVTRILREGPEILNSVEHNGRKGL 404

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P         T  ++I    G + G   +  A  PGG S   LPA  M 
Sbjct: 405 RSYSVSGRVKNPGVHLLPAGSTITDIIAAAGGMLEG--HSFKAYQPGGPSSGLLPA-SMN 461

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
              +D+D L+  GS +G+AAV+V+   DR+ D    + R   F++ ESCGQCTPCR G  
Sbjct: 462 DIPLDFDTLQPHGSFIGSAAVVVLSDHDRARDAALNMLR---FFEDESCGQCTPCRVGCE 518

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             +++M+      A   +  LL E+   +   +IC LG AA  PI+  +K+F
Sbjct: 519 KAVKLMQ------ADTWDQPLLAELCTAMSDASICGLGQAAPNPIRLTMKHF 564


>gi|326386802|ref|ZP_08208422.1| NADH dehydrogenase (quinone) [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208721|gb|EGD59518.1| NADH dehydrogenase (quinone) [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 503

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 150/421 (35%), Positives = 225/421 (53%), Gaps = 45/421 (10%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77
           SL+D  + G W  + ++       +I EV  SGLRGRGGAGF  G+KW    K   D P 
Sbjct: 99  SLADYEATGGWAALRRVRGMTGAEVIAEVMQSGLRGRGGAGFPAGIKW----KTVHDAPG 154

Query: 78  --HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NADE + GT  DR +M  +P+ LIEG  IA+ A+GA   +IY R E+      
Sbjct: 155 TRKYVVCNADEGDSGTFADRMLMEGDPYQLIEGLAIAAHAVGAGHGYIYTRSEYPHAIAK 214

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L+AA+D          + ++     + V  GAGAY+CGEET+LL S+EGK+G  R KPP 
Sbjct: 215 LRAAID---------LSREIVAPFVLEVRAGAGAYVCGEETSLLNSIEGKRGIVRAKPPL 265

Query: 196 PANVGLYGCPTTVNNVESIAVVPTIL-RRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           PA  GL+GCPT VNNV +IA +P I+   GA+ Y+  G + + GTK   ++G++ +    
Sbjct: 266 PALEGLFGCPTVVNNVLTIAAIPHIMAEGGAAEYAALGVDRSLGTKPIQLAGNIRHGGLY 325

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E +  IT  +L+    GG   G   + AV  GG     +P  Q      DY+    + + 
Sbjct: 326 ETAFGITLRDLVHAIGGGTASG-RPVKAVQVGGPLGAYIPPEQFD-LPFDYEAYARVDAL 383

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERL-------- 365
           +G   V+V D + D + A+ R ++ F   ESCG+CTPCR G+   + V++RL        
Sbjct: 384 IGHGGVVVFDDTAD-MGALARFAMEFCAAESCGKCTPCRIGSTRGVEVIDRLRTREKVLD 442

Query: 366 -VKGIAQ-----------KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK----NFR 409
            V  + Q           + ++DLL ++ + ++  ++CALG  A +P+   ++    +FR
Sbjct: 443 PVAALPQMHNAPKHARGREADVDLLKDLCETMKFGSLCALGGFAPYPVLSALRYWPEDFR 502

Query: 410 P 410
           P
Sbjct: 503 P 503


>gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 621

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 147/416 (35%), Positives = 223/416 (53%), Gaps = 5/416 (1%)

Query: 5   QDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           QDR +  +   +  + L DS+  G +  +   L    + ++  V  SGLRGRGG GF TG
Sbjct: 133 QDRQVLRHCGHIDPRELRDSVRAGGYRALGLALGMEPEDVVKAVSDSGLRGRGGGGFPTG 192

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW    +    +  +++ N DE +PG   DR +M  +PH+++EG +I + A+GA   F+
Sbjct: 193 IKWDSCRRA-KGKHRFVLANGDEGDPGAFMDRSLMEGDPHSVLEGMIIGAHAVGARKGFL 251

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    E L  A+ +   +GLLG N    G D D+ V  G GA++CGE +AL+ S+
Sbjct: 252 YVRAEYPLAVEHLNRAIAQAREAGLLGRNILGSGLDFDLEVCRGGGAFVCGESSALMASI 311

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG+ G+PR+K       GL+ CPT +NNVE+ A VP ++ +GA  Y   G + + GTK+F
Sbjct: 312 EGRAGEPRVKYIRSTERGLWDCPTVLNNVETWANVPLVIPQGAQAYRTKGTDGSPGTKVF 371

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+ G V +   VE  M  T  E+I    GG   G     AV  GG S  CLP  ++   +
Sbjct: 372 SLVGKVRHSGLVEVPMGTTLREIIFGL-GGGVLGRGRFKAVQTGGPSGGCLPEDRLDIPV 430

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            D+D L E GS +G+  +IVMD  T ++        F   ESCG+C PCREG   ++ ++
Sbjct: 431 -DFDRLVEEGSMMGSGGMIVMDHRTCMVDVARYFVHFLAEESCGKCVPCREGLQAILDIL 489

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             L +G  +  +   L E+ + +    +C LG  AA P+   ++ F     E  +Q
Sbjct: 490 NDLTQGRGRPGDGRRLEEMGRALSDTALCGLGQTAANPVLSTLRFFPEEYREHEEQ 545


>gi|119944968|ref|YP_942648.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37]
 gi|119863572|gb|ABM03049.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37]
          Length = 588

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 133/379 (35%), Positives = 201/379 (53%), Gaps = 25/379 (6%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRH 100
           + E+  SGLRG GGAGF T  KW    K C    D   Y+V NADE EPGT KDR ++  
Sbjct: 201 LAEIDKSGLRGCGGAGFKTAEKW----KSCLLSDDNQRYVVCNADEGEPGTFKDRVLLNS 256

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS---NSKLGY 157
               LIEG  + ++ IGA   FIY+R E+    + L   +    A+ LLG+   NS+L +
Sbjct: 257 YADLLIEGMTLCAYVIGAQKGFIYLRYEYQHLYKKLLETLQRRRAANLLGAHILNSELSF 316

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D++I +  GAG+Y+CGEE+ALLESLEG++  PR++PPFP   G    PT VNNVE+    
Sbjct: 317 DIEIFM--GAGSYVCGEESALLESLEGRRAIPRIRPPFPVTHGYLDKPTVVNNVETFCYA 374

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             I+ +GA  +S  G     G K+ SISG V      E  + +    ++   CG      
Sbjct: 375 ALIIEKGAENFSAQGLAGFTGCKILSISGDVEKTGIYEIPLGLPVKNVLNL-CGA----- 428

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
            ++ AV  GG S   +   +    ++ +D L   GS       +V ++S DI++     +
Sbjct: 429 QSVQAVQVGGPSGTLITPAEF-SRVISFDDLHTGGS------FMVFNQSRDILENALNFT 481

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F+  ESCG CTPCR GT  +  + +++  G   + ++D + +++  + G + C LG  A
Sbjct: 482 HFFMQESCGFCTPCRVGTKLIYDLADKVATGQGARLDLDSIKQLNHVMNGMSHCGLGQRA 541

Query: 398 AWPIQGLIKNFRPLIEERI 416
           A P+   ++ F     +R+
Sbjct: 542 AEPLLETLEKFPEYFVKRM 560


>gi|254488368|ref|ZP_05101573.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101]
 gi|214045237|gb|EEB85875.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101]
          Length = 569

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 198/349 (56%), Gaps = 18/349 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+       P Y+ VN DE EPGT KDR  +   PH  +EG +IA++A+ A 
Sbjct: 235 FPSGKKWGFVRGNAG--PRYMAVNGDEGEPGTFKDRWYLERVPHHFLEGMLIAAWAVEAD 292

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             F+Y+R E+ +    L+  +    A+G++    + GY   I +  GAGAYICGEE+A++
Sbjct: 293 KVFLYMRDEYPQVLALLRTEIAALEAAGIV----EPGY---IDLRRGAGAYICGEESAMI 345

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR +PP+ A VG++G PT V+NVE++  V  + R G    +   + + +G 
Sbjct: 346 ESIEGKRGMPRHRPPYVAQVGIFGRPTLVHNVETLHWVARVCREGPEVLNSTVKNDRKGL 405

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P         T  ++I+   GG+  G     A  PGG S   LPA  M 
Sbjct: 406 RSYSVSGRVANPGMYLLPAGSTITDIIDA-AGGMADG-HVFKAYQPGGPSSGLLPA-SMA 462

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+  GS +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +
Sbjct: 463 DVVMDFDTLQPHGSFIGSAAVVVLSEHDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAV 522

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++M+      A + +  LL E+S+ +   +IC LG AA  PI+ ++K+F
Sbjct: 523 KLMQ------ADRWDKPLLEELSQAMVDASICGLGQAAPNPIRLVMKHF 565


>gi|56476981|ref|YP_158570.1| formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum
           aromaticum EbN1]
 gi|56313024|emb|CAI07669.1| Formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum
           aromaticum EbN1]
          Length = 585

 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 189/354 (53%), Gaps = 24/354 (6%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F    KW  +       P ++ VN DE EPGT KDR  +  +PH  IEG +IA+  +G  
Sbjct: 236 FPAARKWRTV--AAQPAPRFMAVNIDEGEPGTFKDRHYLETDPHRFIEGMLIAAHVVGID 293

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII-VHHGAGAYICGEETAL 178
             +IY+R E+   R  L   +D   A+           DV  I +  GAGAY+CGEE+A+
Sbjct: 294 GIWIYIRDEYPALRRLLAEELDRVRAAW---------PDVPSIEIRRGAGAYVCGEESAM 344

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI----AVVPTILRRGASWYSGFGRE 234
           +ES+EGK+G PRL+PP+ A VGL+G PT  +N+E++     +V   L      ++  GR 
Sbjct: 345 IESIEGKRGMPRLRPPYVAEVGLFGRPTLEHNLETLWWVRDIVAPALAGEPGPFASRGRN 404

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
             +G + FS+SG V  P  V     IT  EL+E+HCGG+  G + L    PGG+S   LP
Sbjct: 405 GRKGLRSFSVSGRVAKPGVVVTDAGITLRELVEEHCGGMLPGHE-LYGYFPGGASGGMLP 463

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
           A ++    +D+D L E G  +G+AA++V  +             F+ HESCGQCTPCR G
Sbjct: 464 A-RLADMPLDFDTLGEYGCFIGSAAIVVFSQHDRARVLAENAMEFFAHESCGQCTPCRVG 522

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           T     +M++     A      LL E+   +   +IC LG AA  P+Q +++ F
Sbjct: 523 TAKAAELMKQPAWDAA------LLTELGTVMMDASICGLGQAAPNPMQSVLRFF 570


>gi|218510549|ref|ZP_03508427.1| formate dehydrogenase protein, beta subunit [Rhizobium etli Brasil
           5]
          Length = 368

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 126/345 (36%), Positives = 187/345 (54%), Gaps = 4/345 (1%)

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KW  +     +R  Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA   FIY
Sbjct: 13  KWKTVLDAPGER-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATKGFIY 71

Query: 125 VRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
            R E+     ++  AV     +G+LG S    G   DI V  GAGAY+CGEETALL SLE
Sbjct: 72  TRSEYPHAIAAMSEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETALLNSLE 131

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RGT    
Sbjct: 132 GKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGTIPLQ 191

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           I+G+V Y    E +  ++  +++++  GG       + AV  GG      P   +     
Sbjct: 192 IAGNVRYGGLYETAFGLSLGDIVDRIGGGT-ATRRPVKAVQVGGPLGAYFPRA-LFDTPF 249

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   +   +
Sbjct: 250 DYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETAD 309

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++ +GI  ++  +LL ++   ++  ++CALG    +P+   + +F
Sbjct: 310 KIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 354


>gi|83942800|ref|ZP_00955261.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36]
 gi|83846893|gb|EAP84769.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36]
          Length = 570

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/349 (37%), Positives = 195/349 (55%), Gaps = 18/349 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+       P Y+ VN DE EPGT KDR  +   PH  +EG +IA++A+ A 
Sbjct: 236 FPSGKKWGFVRDNAG--PRYMAVNGDEGEPGTFKDRWYLERVPHLFLEGMLIAAWAVEAE 293

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             F+Y+R E+ +    L+  +    A+ ++ +    GY   I +  GAGAYICGEE+A++
Sbjct: 294 KVFLYMRDEYPQVLALLRTEIAALEAACIVPA----GY---IDLRRGAGAYICGEESAMI 346

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR +PP+ A VG++G PT V+NVE++  V  I R G    +   +   +G 
Sbjct: 347 ESIEGKRGLPRHRPPYVAQVGIFGRPTLVHNVETLHWVARICREGPEVLNSTEKNGRKGL 406

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P   E     T  ++IE   GG+  G     A  PGG S   LPA  M 
Sbjct: 407 RSYSVSGRVAKPGMYELPAGSTITDVIEA-AGGMADG-HRFKAYQPGGPSSGLLPAA-MD 463

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D L+  GS +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +
Sbjct: 464 DIPLDFDTLQPHGSFIGSAAVVVLSDQDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAV 523

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++M+      A + +  LL E+S  +   +IC LG AA  PI+ +IK+F
Sbjct: 524 KLMQ------ADRWDKPLLEELSTAMVDASICGLGQAAPNPIRLVIKHF 566


>gi|325681301|ref|ZP_08160830.1| protein HymB [Ruminococcus albus 8]
 gi|324106992|gb|EGC01279.1| protein HymB [Ruminococcus albus 8]
          Length = 378

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 183/300 (61%), Gaps = 3/300 (1%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAG 168
            IAS+A+GAH  ++YVR E+      LQ A+D+    GLLG N    G+D DI +  GAG
Sbjct: 2   TIASYAVGAHQGYVYVRAEYPVAVHRLQIALDQAREYGLLGKNILGKGHDFDIEIRLGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           A++CGEETALL S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +  I+R+GA+WY
Sbjct: 62  AFVCGEETALLTSIEGNRGEPRPRPPFPAVKGLFGKPTLLNNVETYANIAQIIRKGAAWY 121

Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288
           S  G E ++GTK+F++ G +     VE  M  T  E+IE+  GG         A   GG 
Sbjct: 122 SAMGTEKSKGTKVFALGGKITNVGLVEIPMGTTLREIIEEI-GGGIPEGKAFKAAQTGGP 180

Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348
           S  C+PA  +   I DY+ L  +GS +G+  +IVMD    ++        F   ESCG+C
Sbjct: 181 SGGCIPAQHIDTPI-DYESLAALGSMMGSGGLIVMDEDNCMVDVSKFYLNFTVDESCGKC 239

Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           TPCR GT  +++++E++  G  +  +++ + +++ +++  ++CALG +A  P+   ++ F
Sbjct: 240 TPCRVGTRKLLQLLEKITDGKGEMEDLEKIQDLATHMKSSSLCALGQSAPNPVLSTLQYF 299


>gi|154247855|ref|YP_001418813.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2]
 gi|154161940|gb|ABS69156.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2]
          Length = 422

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/358 (40%), Positives = 196/358 (54%), Gaps = 4/358 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D II  +K + LRG GGAGF T  KWS       D   Y+V N +E EPGT KDR ++R 
Sbjct: 45  DAIIETLKDADLRGMGGAGFPTWRKWSAAAASPCDE-KYVVCNGNEDEPGTFKDRHLLRW 103

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDV 159
            PH +IEG +IA+ A+ A+    YV        + ++ AVDE  AS LL S SK+ G  V
Sbjct: 104 TPHQVIEGALIAAVAVKANRVVFYVNPHQAEGIDQMRWAVDEWTASDLLASVSKVVGRPV 163

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            + V   +G YI GEETA++  L+G    PR KPPFP   G+ G PT +NN E++A VP 
Sbjct: 164 TLTVAPSSGRYIGGEETAIVSWLDGGFPFPRRKPPFPFESGVGGLPTLINNTETLANVPH 223

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           IL+ GA WY   G     GTKLFS+SG V  P   E  M  + +EL+  H GG+  G   
Sbjct: 224 ILKNGADWYRDLGVGAAAGTKLFSLSGDVLNPGLYELPMGTSLEELVFVHGGGMLDG-RA 282

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             AV  GG S   L A  +  A +D+D +K   S LGT A+IV+   T I++ +     F
Sbjct: 283 FKAVFTGGPSNTLLTARDLDVA-LDFDSVKRRKSRLGTGAMIVISEGTSIVRKVAEYVAF 341

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
           +   SCGQC  C+ GT  M R+++R+  G   + +   L  + + + G   CAL D A
Sbjct: 342 FASGSCGQCPSCKCGTFQMARLLDRIATGRGVEADRQALDHLCRILPGSGRCALIDGA 399


>gi|239905422|ref|YP_002952161.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
 gi|239795286|dbj|BAH74275.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
          Length = 629

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 205/365 (56%), Gaps = 9/365 (2%)

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KW    +V ++   Y++ N DE +PG   DR +M   PH +IEG +IA+  IGA   +IY
Sbjct: 203 KWE-AARVQTNPKKYVICNGDEGDPGAFMDRSLMEGNPHCVIEGMMIAARGIGADEGYIY 261

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           VR E+    + ++ AV +  A+G LG N    G    + V  GAGA++CGEETAL+ S+E
Sbjct: 262 VRAEYPLAVKRMRKAVADAEAAGYLGDNLFGSGQSFRLEVMEGAGAFVCGEETALIASIE 321

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G +G P  KPPFPA  GL+  PT +NNVE++A +P I+  GA+ Y   G E + GTK F+
Sbjct: 322 GLRGMPSPKPPFPAQQGLWRKPTIINNVETLAQIPRIISEGAAAYRALGTETSPGTKTFA 381

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGI---RGGWDN--LLAVIPGGSSVPCLPAGQM 298
           ++GHV+    +E     T  E++    GG+   RG  D     AV  GG S  CL    +
Sbjct: 382 LTGHVSNTGLIEVPFGATLREVVLNIGGGVTDDRGFIDEKGFKAVQIGGPSGGCL-TPDL 440

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D+D L+ +G+ +G+  ++VM++ T ++        F + ESCG+C  CREGT  +
Sbjct: 441 LDLPLDFDSLRSVGAMVGSGGLVVMNQKTCMVSVARFFMEFTQRESCGKCVLCREGTKQL 500

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +++ +++G      + LL  +   ++  ++C LG  A  P+   +K+FR   EE + +
Sbjct: 501 LALLDDVIEGRGTAETLSLLETLGHAVQVGSLCGLGKTAPNPVLSTLKHFRKDYEEHVFE 560

Query: 419 YHRCN 423
             RC+
Sbjct: 561 -KRCS 564


>gi|303246231|ref|ZP_07332511.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492294|gb|EFL52166.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 632

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 201/356 (56%), Gaps = 9/356 (2%)

Query: 74  SDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            D P  Y++ N DE +PG   DR +M   PH +IEG +IA+  IGA   +IYVR E+   
Sbjct: 213 QDNPKKYVICNGDEGDPGAFMDRSVMEGNPHCIIEGMMIAARGIGADEGYIYVRAEYPLA 272

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
            + ++ AV E  A+G LG +    G    + V  GAGA++CGEETAL+ S+EG++G P  
Sbjct: 273 VKRMRHAVAEAEAAGYLGDDVFGSGQSFRLEVMEGAGAFVCGEETALMASIEGRRGMPAP 332

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFPA  GL+  PT +NNVE++A VP I+ +GA  Y   G E + GTK F+++GHV   
Sbjct: 333 KPPFPAQKGLWRKPTIINNVETLAQVPRIIGKGAEAYRSLGTEKSPGTKTFALTGHVCNT 392

Query: 252 CTVEESMSITFDELIEKHCGGI---RGGWDN--LLAVIPGGSSVPCLPAGQMRGAIMDYD 306
             +E     T  E++    GG+   RG  D     AV  GG S  CL    +    +D+D
Sbjct: 393 GLIEVPFGATLREVVINIGGGVTDDRGNIDKTGFKAVQIGGPSGGCL-TPDLLDLPLDFD 451

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L+ +G+ +G+  ++VM++ T ++        F + ESCG+C  CREGT  ++ +++ ++
Sbjct: 452 SLRSVGAMVGSGGLVVMNQKTCMVSVARFFMEFTQRESCGKCVLCREGTKQLLALLDDVI 511

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +G      ++LL  +   ++  ++C LG  A  P+   +K+FR   EE + +  RC
Sbjct: 512 EGRGTAETLELLETLGHAVQIGSLCGLGKTAPNPVLSTLKHFRKEYEEHVFE-KRC 566


>gi|254460680|ref|ZP_05074096.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206677269|gb|EDZ41756.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 561

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 194/349 (55%), Gaps = 18/349 (5%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+    ++   YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A 
Sbjct: 227 FPSGKKWGFV--RANEGTRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAD 284

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             FIY+R E+      L   + +   +G++    + G+   I +  GAGAYICGEE+A++
Sbjct: 285 TCFIYMRDEYPAVLHILAEEIAKLENAGIV----EKGF---IDLRRGAGAYICGEESAMI 337

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR +PPF A VG++  PT V+NVE++  V  I+R G    S   +   +G 
Sbjct: 338 ESIEGKRGLPRHRPPFVAQVGIFNKPTLVHNVETLLWVTRIVREGPEVLSSIEKNGRKGL 397

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +SISG VN P         T  +LI+   G + G   +  A  PGG S   LPA  + 
Sbjct: 398 RSYSISGRVNDPGVHLLPAGSTIMDLIDAAGGMLEG--HSFKAYQPGGPSAGLLPA-SIN 454

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +G+ +G+AAV+++        A   +  F++ ESCGQCTPCR G    +
Sbjct: 455 DVPMDFDTLQPLGTFIGSAAVVILSDKDSARGAALNMLRFFEDESCGQCTPCRVGCEKAV 514

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++M+      A K +  LL E+   +   +IC LG AA  PI+  +K+F
Sbjct: 515 KLMQ------ADKWDQPLLEELCSAMGDASICGLGQAAPNPIRMTMKHF 557


>gi|209516242|ref|ZP_03265100.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160]
 gi|209503353|gb|EEA03351.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160]
          Length = 414

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 146/398 (36%), Positives = 209/398 (52%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           G  L    + G  + + K LE   + II E+  + LRG GGAGF    KW+ +     D 
Sbjct: 16  GADLDAWFACGGGEGLAKALED-PEAIIAEIALADLRGMGGAGFPAHRKWAPV-AAAPDG 73

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ N +E EPGT KDR ++ H PH +IEG +IA+ A  A+   +YV           
Sbjct: 74  DKYVICNGNEDEPGTFKDRFLLEHTPHQVIEGALIAALATRANHVVLYVNPHQTASLAVT 133

Query: 137 QAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + AV +        +  S +G  V + V   +G YI GEETA++ S+EG    PR KPPF
Sbjct: 134 REAVKQWSGHAQFAAIESWIGGPVSLGVVPSSGLYIGGEETAVIASVEGGFPFPRRKPPF 193

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G++G PT VNN+E++A VP ILR GA WY   G  +  GTKL+S+SG V  P   E
Sbjct: 194 PAEHGVHGAPTIVNNIETLAHVPGILRHGAQWYRDLGVGDAAGTKLYSLSGDVLRPGLYE 253

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  + + L+ +H GG+  G     AV  GG S   L    +  A +D+D +++  S L
Sbjct: 254 LPMGTSLETLVFQHGGGMLQG-KEFKAVFTGGPSNTLLTKRDLDVA-LDFDSVRQRRSRL 311

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+IV+   T I++ +     F+   SCGQC PC+ GT  MMR++ RL  G   + ++
Sbjct: 312 GTGAMIVVSEGTSIVRKVADYVNFFAQGSCGQCPPCKGGTFQMMRLLNRLDTGRGVRADL 371

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           + L  +   + G   C L D A   ++  I  FR   E
Sbjct: 372 EALENLCTVLPGSGRCGLIDGAVTVVESSINQFRAEYE 409


>gi|238596288|ref|XP_002394009.1| hypothetical protein MPER_06171 [Moniliophthora perniciosa FA553]
 gi|215462351|gb|EEB94939.1| hypothetical protein MPER_06171 [Moniliophthora perniciosa FA553]
          Length = 245

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 110/203 (54%), Positives = 132/203 (65%), Gaps = 20/203 (9%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN Y      L  + SRG W     IL KG  WII  +K SGLRGRGGAGF 
Sbjct: 37  LKDQDRIFTNAYCRHDHGLKGAQSRGDWHRTKDILLKGDSWIIQTIKDSGLRGRGGAGFP 96

Query: 62  TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 97  SGLKWSFMNKPNWQNDKRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 156

Query: 119 HCAFIYVRGEFIRE----------------RESLQAAVDECYASGLLGSNS-KLGYDVDI 161
           + A+IY+RGEF +E                   +Q A++E YASGL+G N+   GY  D+
Sbjct: 157 NAAYIYIRGEFYQEGTYSGFSLHIILTVCPASHVQQAINEAYASGLIGKNACGSGYSFDV 216

Query: 162 IVHHGAGAYICGEETALLESLEG 184
            +H GAGAYICGEETAL+ESL G
Sbjct: 217 YLHRGAGAYICGEETALIESLXG 239


>gi|149202011|ref|ZP_01878985.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035]
 gi|149145059|gb|EDM33088.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035]
          Length = 568

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/352 (38%), Positives = 191/352 (54%), Gaps = 24/352 (6%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +G KW F+       P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A 
Sbjct: 234 FPSGRKWGFV--RAEPGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAE 291

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             FIY+R E+    + L   +    A+ L+    K GY   + +  GAGAYICGEE+A++
Sbjct: 292 RCFIYMRDEYPAVLDILATEIAALEAADLI----KPGY---VELRRGAGAYICGEESAMI 344

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR +PPF A VG++  PT VNNVE++  V  ILR G    +       +G 
Sbjct: 345 ESIEGKRGLPRHRPPFVAQVGIFNRPTLVNNVETLLWVTRILREGPEILNTVELNGRKGL 404

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P         T  ++I    G + G      A  PGG S   LPA  M 
Sbjct: 405 RSYSVSGRVKNPGVHLLPAGSTITDIIAAAGGMLDG--HTFKAYQPGGPSSGLLPA-SMH 461

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
              +D+D L+  G+ +G+AAV+V+   DR+ D    + R   F++ ESCGQCTPCR G  
Sbjct: 462 DVPLDFDTLQPHGTFIGSAAVVVLSDHDRARDAALNMLR---FFEDESCGQCTPCRVGCE 518

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             +++M+      A   +  LL E+   +   +IC LG AA  PI+  +K+F
Sbjct: 519 KAVKLMQ------ADTWDQPLLTELCTAMSDASICGLGQAAPNPIRLTMKHF 564


>gi|302349194|ref|YP_003816832.1| Putative sulfur reductase membrane anchor subunit, membrane anchor
           PsrC-like protein [Acidilobus saccharovorans 345-15]
 gi|302329606|gb|ADL19801.1| Putative sulfur reductase membrane anchor subunit, membrane anchor
           PsrC-like protein [Acidilobus saccharovorans 345-15]
          Length = 487

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/381 (34%), Positives = 213/381 (55%), Gaps = 7/381 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDR 76
           +SL   +  G    +++ L   +  +I+EVK S LRGRGGA F TG+KW S M +    +
Sbjct: 93  RSLQQYLQLGGMRGLERALSMPQAEVIDEVKRSQLRGRGGAYFPTGLKWESAMRQAAPTK 152

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+VVN DE + G   DR +M  +P+ +IEG +IA++AIGA   + Y+R E+     ++
Sbjct: 153 --YVVVNGDEGDAGAYVDRFLMEWDPYLVIEGALIAAYAIGAGKVYFYIRREYPGAVAAV 210

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           + AV+E   +G +GS +  G +V++ VH G G+Y+ GEETA++ ++ G++ +P  +PP+P
Sbjct: 211 RRAVEEVREAGYIGSKASRGPNVELEVHVGRGSYVVGEETAMINAIMGRRPEPTPRPPYP 270

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT VNNVE+++ VP I+  G   Y+  G   +RGTK+ S+S   + P   E 
Sbjct: 271 TERGLFGMPTVVNNVETLSSVPWIIENGGDAYAELGFSRSRGTKVLSLSSTFSRPGLYEV 330

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              ++  E++    GG+R G    L V+ G  + P LP+       +  + L+ +G+ LG
Sbjct: 331 EFGVSLREVVYDMGGGVRFGKLKFL-VVGGPLAGPVLPS--ELDVKLGVEELRAIGASLG 387

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER-LVKGIAQKREI 375
              VI     T +++A+  +  F   ESCG+C PCR GT     ++E  L +G     E 
Sbjct: 388 HGNVIAFSDDTSMLEALHEIVHFASFESCGKCFPCRLGTARADEILEEALSRGYLTPAEA 447

Query: 376 DLLYEVSKNIEGRTICALGDA 396
           D L  ++  +   ++C  G A
Sbjct: 448 DELKSIATAMRAASLCGHGQA 468


>gi|56695735|ref|YP_166086.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
 gi|56677472|gb|AAV94138.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 567

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 146/379 (38%), Positives = 211/379 (55%), Gaps = 20/379 (5%)

Query: 32  VDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           V K L  G DW  + + V A+GLRG GGAGF +G KW F+    +  P YL VN DE EP
Sbjct: 203 VLKGLRAGGDWEAVQDSVLAAGLRGLGGAGFPSGRKWGFV--RANPGPRYLAVNGDEGEP 260

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR  +   PH  +EG +IA++A+ A   +IY+R E+    E L+  +    A+G++
Sbjct: 261 GTFKDRYYLERVPHLFLEGMLIAAWAVEAETCYIYMRDEYPAVLEILRREIAALEAAGIV 320

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                 GY   I +  GAGAYICGEE+A++ES+EGK+G PR +PPF A VGL+G PT V+
Sbjct: 321 AK----GY---IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAQVGLFGRPTLVH 373

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           N+E++  V  + R G    +   +   +G + +S+SG V  P         T  ++I   
Sbjct: 374 NIETLHWVARVCREGPEVLNSIEKNGRKGLRSYSVSGRVARPGVHLLPAGSTIRDVIAAA 433

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
            G   G      A  PGG S   LPA  M    +D+D L+  GS +G+AAV+V+ +    
Sbjct: 434 GGMAAG--HVFKAYQPGGPSSGLLPA-SMDDIPLDFDTLQPHGSFIGSAAVVVLSQQDSA 490

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
             A   +  F++ ESCGQCTPCR G    +++M+      A+  +  LL E+ + +   +
Sbjct: 491 RDAALNMLRFFEDESCGQCTPCRAGCEKAVKLMQ------AEHWDQPLLEELCQVMADAS 544

Query: 390 ICALGDAAAWPIQGLIKNF 408
           IC LG AA  PI+  +K+F
Sbjct: 545 ICGLGQAAPNPIRLTMKHF 563


>gi|258591892|emb|CBE68197.1| Putative NADH dehydrogenase; similar to formate dehydrogenase, beta
           subunit (fdhB1) [NC10 bacterium 'Dutch sediment']
          Length = 472

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 136/367 (37%), Positives = 204/367 (55%), Gaps = 21/367 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGH----WDNVDKILEKGRDWIINEVKASGLRGRGG 57
           LT+  +    +   +G  L D + RG     +  + + L+   + ++ EV+ S LRGRGG
Sbjct: 65  LTEHPQPHIEIRASRGVIL-DRIVRGETGPDYGALRRALDLTSEEVLREVERSELRGRGG 123

Query: 58  AGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115
           AGF TG KW     V     H  ++VVNADE +PG   DR I+  +PH L+EG  IA++A
Sbjct: 124 AGFPTGRKWR---AVAQQEAHEKFVVVNADEGDPGAYIDRVILERDPHLLLEGVRIAAYA 180

Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEE 175
           +GA    IY+R E+     +LQ AV E       G      + V+I+V  G G+Y+CGEE
Sbjct: 181 VGARRGVIYLRKEYPEALPALQRAVQEA------GRVWPGEFAVEIVV--GQGSYVCGEE 232

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TALL S+EGK+ + R +PP+P   GLY  PT +NNVE++A +P I++ GA+ Y   G   
Sbjct: 233 TALLNSIEGKRPEVRTRPPYPTARGLYQRPTLINNVETLAAIPWIIQEGAAAYRNLGFSQ 292

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           +RGTKL S++     P   E    IT  E++E   GG+  G   L  +I GG     +P 
Sbjct: 293 SRGTKLLSLNSLFRKPGLYEVEFGITLREVVEGLGGGLCSG--PLKGLIVGGPLAGVIPP 350

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
            ++    + ++ L+E+G+G+G   V+  D  T I++    +  F  +ESCG+CTPCR G+
Sbjct: 351 -ELLDTRLGFEELREIGAGVGHGGVVAFDDRTSILELAHHVFSFGAYESCGKCTPCRLGS 409

Query: 356 GWMMRVM 362
             + +V 
Sbjct: 410 PRVEQVF 416


>gi|56696439|ref|YP_166796.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
 gi|56678176|gb|AAV94842.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 560

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 145/379 (38%), Positives = 210/379 (55%), Gaps = 20/379 (5%)

Query: 32  VDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           V K L  G DW  + + V A+GLRG GGAGF +G KW F+    +  P YL VN DE EP
Sbjct: 196 VLKGLRAGGDWEAVQDSVLAAGLRGLGGAGFPSGRKWGFV--RANPGPRYLAVNGDEGEP 253

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR  +   PH  +EG +IA++A+ A   +IY+R E+    E L+  +    A+G++
Sbjct: 254 GTFKDRYYLERVPHLFLEGMLIAAWAVEAETCYIYMRDEYPAVLEILRREIAALEAAGIV 313

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                 GY   I +  GAGAYICGEE+A++ES+EGK+G PR +PPF A VGL+G PT V+
Sbjct: 314 AK----GY---IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAQVGLFGRPTLVH 366

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           N+E++  V  + R G    +   +   +G + +S+SG V  P         T  ++I   
Sbjct: 367 NIETLHWVARVCREGPEVLNSVEKNGRKGLRSYSVSGRVARPGVHLLPAGSTIRDVIAA- 425

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
             G         A  PGG S   LPA  M    +D+D L+  GS +G+AAV+V+ +    
Sbjct: 426 -AGGMAAGHVFKAYQPGGPSSGLLPA-SMDDIPLDFDTLQPHGSFIGSAAVVVLSQQDSA 483

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
             A   +  F++ ESCGQCTPCR G    +++M+      A+  +  LL E+ + +   +
Sbjct: 484 RDAALNMLRFFEDESCGQCTPCRAGCEKAVKLMQ------AEHWDQPLLEELCQVMADAS 537

Query: 390 ICALGDAAAWPIQGLIKNF 408
           IC LG AA  PI+  +K+F
Sbjct: 538 ICGLGQAAPNPIRLTMKHF 556


>gi|289679201|ref|ZP_06500091.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae
           FF5]
          Length = 246

 Score =  209 bits (532), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 144/235 (61%), Gaps = 4/235 (1%)

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW  MPK  S    YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A
Sbjct: 1   GFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKA 60

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
           +  +I++RGE++   + L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETA
Sbjct: 61  YRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETA 120

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--N 235
           L+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP I+  G  WY    RE   
Sbjct: 121 LINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSE 180

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
           + GTKL   SG V  P   E    +   EL E + GG+R G+  L    PGG+  
Sbjct: 181 DHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGF-KLKCWQPGGAGT 234


>gi|89068003|ref|ZP_01155420.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
           HTCC2516]
 gi|89046242|gb|EAR52299.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
           HTCC2516]
          Length = 561

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 209/375 (55%), Gaps = 20/375 (5%)

Query: 36  LEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           L +G DW  +   V A+GLRG GGAGF +G KW F+    +  P YL VN DE EPGT K
Sbjct: 201 LREGGDWEAVQETVLAAGLRGLGGAGFPSGRKWGFV--RANPGPRYLAVNGDEGEPGTFK 258

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           DR  +   PH  +EG +IA++A+ A   F+Y+R E+    E L+  +    A+GL+    
Sbjct: 259 DRHYLERTPHLFLEGMLIAAWAVEAERVFLYMRDEYPAVLEILRRELAALEAAGLIAP-- 316

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             GY   + +  GAGAYICGEE+A++ES+EG +G PR +PP+ A VG++G PT V+N+E+
Sbjct: 317 --GY---VELRRGAGAYICGEESAMIESIEGNRGIPRHRPPYVAQVGVFGRPTLVHNIET 371

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           +  V  I R G    S   +   +G + +S+SG V  P         T  ++I+   GG+
Sbjct: 372 LHWVARICREGPEVLSATEKNGRKGLRSYSVSGRVAEPGVYLLPAGSTIRDVIDA-AGGM 430

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
             G     A  PGG S   LPA  M    +D+D L+  GS +G+AAV+V+        A 
Sbjct: 431 AEG-HVFKAYQPGGPSSGLLPA-HMDDIPLDFDTLQPHGSFIGSAAVVVLSDQDRARDAA 488

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
             +  F++ ESCGQCTPCR G    +++M+      A+  +  LL ++   +   +IC L
Sbjct: 489 LNMLRFFEAESCGQCTPCRVGCEKAVKLMQ------AESWDRALLEDLCDVLADASICGL 542

Query: 394 GDAAAWPIQGLIKNF 408
           G AA  PI+  +K+F
Sbjct: 543 GQAAPNPIRLTMKHF 557


>gi|291436113|ref|ZP_06575503.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
 gi|291339008|gb|EFE65964.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
          Length = 308

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/291 (40%), Positives = 168/291 (57%), Gaps = 9/291 (3%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
            IA++A GAH  ++Y+RGE+ R    ++ AVD   A GLLG +    GY  DI +  GAG
Sbjct: 9   TIAAYATGAHTGYLYLRGEYPRALHRMRHAVDRARARGLLGDDVLGQGYAFDIEIRRGAG 68

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AY+CGEETAL  S+EG +G+PR KPPFP   GL+G PT  NNVE++  V  IL RGA  Y
Sbjct: 69  AYVCGEETALFNSIEGYRGEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILTRGAPAY 128

Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288
           +  G   + GTKLF +SG V  P   E     T   L+E    G+R   + L AV+ GG+
Sbjct: 129 AATGTPGSTGTKLFCVSGSVERPGVYEVPFGTTLGALLEP--AGVR---EGLRAVLLGGA 183

Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348
           +   + A ++    + ++G +E G+ LG+  V+  D +  + + + R++ F++ ESCGQC
Sbjct: 184 AGGFVRADELD-IPLTFEGTREAGTTLGSGVVMAFDDTVPLPRLLLRIARFFRDESCGQC 242

Query: 349 TPCREGTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            PCR GT      + R+V+  G     +I LL EV + +   +IC LG  A
Sbjct: 243 VPCRVGTVRQEEALHRIVERTGADAAGDIALLREVGRAMRDASICGLGQTA 293


>gi|296531991|ref|ZP_06894774.1| NADH dehydrogenase (quinone) [Roseomonas cervicalis ATCC 49957]
 gi|296267683|gb|EFH13525.1| NADH dehydrogenase (quinone) [Roseomonas cervicalis ATCC 49957]
          Length = 412

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 198/373 (53%), Gaps = 10/373 (2%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRD 96
           R  II  ++ SGLRG GGAGF T  KW    +  + +P    Y+V N +E EPGT KDR 
Sbjct: 38  RAGIIPLLERSGLRGMGGAGFPTWRKW----QAVAQQPAGGKYVVCNGNEDEPGTFKDRH 93

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS-NSKL 155
           ++R  PH +IEG +IA+ A+ A    +Y+           + AV +     LLG+    L
Sbjct: 94  LLRWTPHAVIEGGLIAALAVDASHLVLYINPHEAEAVAEARRAVAQWRGHALLGAVEEAL 153

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G+ V + V   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E++A
Sbjct: 154 GHAVALTVVESSGRYIGGEETAVISWLEGSFPFPRRKPPFPAEQGVGGAPTLINNTETLA 213

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +P I   GA WY G G     GTKL+S+SG V  P   E  M  +  ELI  H GG+  
Sbjct: 214 NIPYIFAHGAEWYRGLGVGEAVGTKLYSLSGDVMRPGLYELPMGTSLQELIFTHGGGMLE 273

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
           G D   AV  GG S   L    +  A +D+D ++   S LGT A+IV+   T I++    
Sbjct: 274 GRD-FKAVFTGGPSNTLLTKRDLDVA-LDFDSVRARQSRLGTGAMIVISEGTSIVRKTAE 331

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
              F+   SCGQC PC+ GT  + R+++R+  G     ++  L+ + + + G   C L D
Sbjct: 332 YIAFFAAGSCGQCPPCKAGTFQLARLLDRIEGGRGTAEDLRALHSLCRILPGSGRCGLID 391

Query: 396 AAAWPIQGLIKNF 408
            A   ++  ++ F
Sbjct: 392 GAVTVVESSLQTF 404


>gi|213612345|ref|ZP_03370171.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 232

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/185 (54%), Positives = 132/185 (71%), Gaps = 1/185 (0%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP 
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPA 227

Query: 220 ILRRG 224
           IL  G
Sbjct: 228 ILANG 232


>gi|289767858|ref|ZP_06527236.1| NADH:ubiquinone oxidoreductase, NADH-binding protein [Streptomyces
           lividans TK24]
 gi|289698057|gb|EFD65486.1| NADH:ubiquinone oxidoreductase, NADH-binding protein [Streptomyces
           lividans TK24]
          Length = 312

 Score =  206 bits (523), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/307 (39%), Positives = 173/307 (56%), Gaps = 17/307 (5%)

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156
           M  +P+ L+E   IA++A GAH  ++Y+RGE+ R    L  A+++    GLLG +    G
Sbjct: 1   MEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTHAIEQARTRGLLGDDVLGQG 60

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           Y  DI +  GAGAYICGEETAL  S+EG++G+PR KPPFP   GL+G PT  NNVE++  
Sbjct: 61  YAFDIEIRRGAGAYICGEETALFNSIEGRRGEPRSKPPFPVEKGLFGKPTVENNVETLVN 120

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V  IL  GA  Y+  G   + G KLF +SG V  P   E     T  EL+     G+R  
Sbjct: 121 VLPILTMGAEAYAAIGTPTSTGPKLFCVSGTVARPGVYELPFGATLGELL--ALAGVR-- 176

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
            DNL AV+ GG++      G +R   +D    ++G +E G+ LG+  V+  D +  + + 
Sbjct: 177 -DNLRAVLLGGAA-----GGFVRPDELDIPLTFEGTREAGTTLGSGVVMAFDDTVPLPRL 230

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV--KGIAQKREIDLLYEVSKNIEGRTI 390
           + R++ F++ ESCGQC PCR GT      + R+    G A   +I LL EV + +   +I
Sbjct: 231 LLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIADRTGAAAADDIALLREVGRAMRDASI 290

Query: 391 CALGDAA 397
           C LG  A
Sbjct: 291 CGLGQTA 297


>gi|323718238|gb|EGB27418.1| hypothetical protein TMMG_02285 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 217

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 136/205 (66%), Gaps = 25/205 (12%)

Query: 16  QGKSLSDSMSRGHWDN--------------------VDKILEKGRDWIINEVKASGLRGR 55
           Q   L+  +SR HWD+                    + K L    D +I+ VK SGLRGR
Sbjct: 4   QATPLTPVISR-HWDDPESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGR 62

Query: 56  GGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           GGAGF+TG KWSF+P+     + +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA
Sbjct: 63  GGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIA 122

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYI 171
           ++AI AH AF+YVRGE +     L  AV E YA+G LG N    G+D++++VH GAGAYI
Sbjct: 123 AYAIRAHHAFVYVRGEVVPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYI 182

Query: 172 CGEETALLESLEGKKGQPRLKPPFP 196
           CGEETALL+SLEG++GQPRL+PP P
Sbjct: 183 CGEETALLDSLEGRRGQPRLRPPSP 207


>gi|73982777|ref|XP_864298.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 4 [Canis familiaris]
          Length = 210

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/161 (60%), Positives = 116/161 (72%), Gaps = 1/161 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195


>gi|300690964|ref|YP_003751959.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           PSI07]
 gi|299078024|emb|CBJ50666.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           PSI07]
          Length = 421

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/367 (38%), Positives = 199/367 (54%), Gaps = 4/367 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+ ++++GL G GGAGF T  KW     + S    Y+VVN +E EPGT KD  ++   P
Sbjct: 41  IIDTIESAGLAGMGGAGFPTHRKWRAAASL-SASVKYVVVNGNEDEPGTFKDGLLLARTP 99

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS-NSKLGYDVDI 161
           H ++EG +IA+ AI A     YV         +L  A+ +  AS L+    + LG+ V +
Sbjct: 100 HQVVEGALIAALAIRATHVVFYVNPRIADGLAALDEAIAQWRASPLVERLAATLGHPVAL 159

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V   +G YI GE TA++ SLEG    PR KPP P   G+ G PT +NN E+IA VP IL
Sbjct: 160 AVARSSGRYIGGEATAIVSSLEGGFPFPRRKPPHPTESGIGGAPTLINNTETIANVPHIL 219

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R G + Y   G     GTKL+S+SG V  P   E  M  +  EL+  H GG+ GG     
Sbjct: 220 REGPAAYRALGVGEACGTKLYSLSGDVLRPGLYELPMGTSLRELVFAHGGGMLGG-KAFK 278

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
            V  GG S   L A  +  A +D+  ++  GS LGT A+IV+   T I++ + R   F+ 
Sbjct: 279 GVFTGGPSNTLLTAADLDVA-LDFASVRARGSNLGTGAMIVIGEGTSIVREVARYVEFFA 337

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCGQC PC+ GT  M R++ R+  G A +R++  L  + + + G   CAL D A   +
Sbjct: 338 AESCGQCPPCKCGTFQMARLLHRIDTGAASRRDVTALKSLCETLPGSGRCALIDGAVTVV 397

Query: 402 QGLIKNF 408
           +  ++ F
Sbjct: 398 ESSLRTF 404


>gi|332667238|ref|YP_004450026.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100]
 gi|332336052|gb|AEE53153.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100]
          Length = 549

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 197/379 (51%), Gaps = 13/379 (3%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           ++LE   + ++ E+  SGLRGRGGAGF   +K + + K  ++   Y+V NADE +PG   
Sbjct: 171 QLLESDPEQLLEEITLSGLRGRGGAGFPLAIKLAGVKKENAEE-KYIVCNADEGDPGAFS 229

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           DR ++  +   ++ G  I+ +  GA    +Y+R E+      LQ A++    + +     
Sbjct: 230 DRYLLEQKAQLVLFGMAISGYISGAQDGVLYIRAEYPEAISILQKAIEPF--NRIFPHQK 287

Query: 154 KLGYDVDIIVH--HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
           + G  VD  +H     GAYICGEETALL SLEG + + R +PPFP   GL+G PT VNNV
Sbjct: 288 RNGERVDFKLHVVKAQGAYICGEETALLSSLEGLRPEVRTRPPFPTQYGLFGKPTAVNNV 347

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++A V  IL  G   +   G   + GTKL S+  + N P   E  M      +I +  G
Sbjct: 348 ETLANVYAILSDGGMAFKVIGTAKSSGTKLLSLDSYFNNPGLYEVDMGTPLSVVINELGG 407

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G++   + + A   GG     +P  ++    +D++     G  LG A+++ +     +++
Sbjct: 408 GLK---EPIKAFHIGGPLGGLVPLHKIADLTIDFESFASQGFLLGHASILSIPTRFPLLE 464

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID--LLYEVSKNIEGRT 389
            +  L  F  HESCG+C PCR G+   +R  E L K  A   +ID  L  ++   +E  +
Sbjct: 465 YLEHLFAFTAHESCGKCFPCRIGS---VRGKELLQKARAGNYQIDRELWDDLIDTLEKGS 521

Query: 390 ICALGDAAAWPIQGLIKNF 408
           +CALG     P++  ++ F
Sbjct: 522 LCALGGGLPLPVKNAMQYF 540


>gi|302348415|ref|YP_003816053.1| NAD(P)+-dependent formate dehydrogenase, beta subunit [Acidilobus
           saccharovorans 345-15]
 gi|302328827|gb|ADL19022.1| NAD(P)+-dependent formate dehydrogenase, beta subunit [Acidilobus
           saccharovorans 345-15]
          Length = 481

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 212/392 (54%), Gaps = 13/392 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDR 76
           KSL D ++RG    +++ L   +  +I+EVK S LRGRGGA F TG+KW S M +    +
Sbjct: 96  KSLRDYLARGGMRGLERALSMPQAEVIDEVKRSQLRGRGGAYFPTGLKWESAMRQAAPAK 155

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++VN DE + G   DR +M  +P+ +IEG +IA++AIGA   + Y+R E+     ++
Sbjct: 156 --YVIVNGDEGDAGAYVDRFLMEWDPYLVIEGALIAAYAIGAGRVYFYIRREYPGAVAAV 213

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           + AV+E   +G L          ++ VH G G+Y+ GEETA++ ++ G++ +P  +PP+P
Sbjct: 214 RRAVEEVREAGYLSPP----LPSELEVHVGRGSYVVGEETAMINAIMGRRPEPTPRPPYP 269

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT VNNVE+++ VP I+  G   Y+  G   +RGTK+ S+S   + P   E 
Sbjct: 270 TERGLFGMPTVVNNVETLSSVPWIVENGGDAYAELGFSRSRGTKVLSLSSTFSRPGLYEV 329

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              ++  E++    GG+R G   L  V+ GG     +P+ ++    +  + L+ +G+ LG
Sbjct: 330 EFGVSLREVVYDMGGGVRFG--KLKGVMIGGPLASLIPSEEL-DVKLGVEELRAIGASLG 386

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              VI     T +   +  + +F   ESCG+C PCR GT  + R+     KG   + E  
Sbjct: 387 HGNVIAFSDDTSVADMLHEVLLFASFESCGKCFPCRLGTAKLERMFS---KGYLTEEEAR 443

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
               ++  +   ++C  G AA   +   +K F
Sbjct: 444 EAMSIANTMAVASLCGHGQAAGQAVAVTLKKF 475


>gi|255068411|ref|ZP_05320266.1| protein HymB [Neisseria sicca ATCC 29256]
 gi|255047352|gb|EET42816.1| protein HymB [Neisseria sicca ATCC 29256]
          Length = 417

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 197/370 (53%), Gaps = 8/370 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99
           I+++++ + L G GGAGF T  KW     V +   H   Y+V NA+E EPGT KDR ++ 
Sbjct: 41  IVSKLQDANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158
             PH +IEG +IA+ A  A+ A +YV         S+  A+++   S L +   + LG  
Sbjct: 99  KTPHQVIEGVLIAAVACRANKAIMYVNPHQTESVASIVPAIEQWKKSDLFIRIENYLGKP 158

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +D+ +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A +P
Sbjct: 159 LDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVAGEPTLINNTETFANIP 218

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  H GG+  G  
Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S   L A  +    +D+  ++E  S LGT A+IV+   T +++ +     
Sbjct: 278 TFKAVFTGGPSNTLLTAKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+   SCGQC PC+ GT  + R++ R+  GI    ++  L  + + +     C L D A 
Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396

Query: 399 WPIQGLIKNF 408
             +Q  ++ F
Sbjct: 397 TVLQSSLRTF 406


>gi|158421745|ref|YP_001523037.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
 gi|158328634|dbj|BAF86119.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
          Length = 417

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 142/367 (38%), Positives = 200/367 (54%), Gaps = 4/367 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II  ++A+GLRG GGAGF T  KW+       +    +V N +E EPGT KDR ++R  P
Sbjct: 41  IIPALEAAGLRGMGGAGFPTHRKWAAA-AAAQNTDRTVVCNGNEDEPGTFKDRHLLRWTP 99

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE-CYASGLLGSNSKLGYDVDI 161
           H +IEG +IA+ AIGA   F+Y+  + I     ++ AV +      L     ++G  +++
Sbjct: 100 HQVIEGALIAALAIGARRVFLYINPQQIEALAEMRRAVAQWADTDRLRAVERRIGATLEL 159

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V   +G YI GEETA++ SLEG    PR KPPFPA  G  G PT +NN E++A VP IL
Sbjct: 160 TVFPTSGRYIGGEETAVISSLEGGFPFPRRKPPFPAESGYRGTPTLINNTETLANVPHIL 219

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R GA+WY   G     GTKL+S+SG V  P   E  M     +LI  H GG+  G     
Sbjct: 220 RHGAAWYRRLGLGEAVGTKLYSLSGDVLRPGLYELPMGTPLQDLIFVHGGGMLEG-KAFK 278

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S   L A  +  A +D+D ++   S LGT A+IV+   T I++ +     F+ 
Sbjct: 279 AVFTGGPSNTLLTARDLDVA-LDFDSVRARRSRLGTGAMIVISEGTSIVRKVAEYIDFFA 337

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
             SCGQC PC+ GT  M R+++R+  G A   ++  LY + + + G   C L D A   +
Sbjct: 338 KGSCGQCPPCKAGTFQMARLLDRVDSGRAVPADLAALYNLCQILPGSGRCGLIDGAVTVV 397

Query: 402 QGLIKNF 408
           +  +  F
Sbjct: 398 ESSLHTF 404


>gi|319637988|ref|ZP_07992752.1| NADH dehydrogenase [Neisseria mucosa C102]
 gi|317400633|gb|EFV81290.1| NADH dehydrogenase [Neisseria mucosa C102]
          Length = 417

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/368 (35%), Positives = 197/368 (53%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           I+++++ + L G GGAGF T  KW + +     +   Y+V NA+E EPGT KDR ++   
Sbjct: 41  IVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKNGDKYVVCNANEDEPGTFKDRVLLAKT 100

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYDVD 160
           PH +IEG +IA+ A  A+ A +Y+         S+  A+++   S L +   + LG  +D
Sbjct: 101 PHQVIEGVLIAAVACRANKAILYINPHQTESIASITPAIEQWKNSDLFIRIENYLGKPLD 160

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A +P I
Sbjct: 161 LQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIPQI 220

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           L +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  H GG+  G    
Sbjct: 221 LAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLKSLIFDHGGGMLEG-RTF 279

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AV  GG S   L A  +    +D+  ++E  S LGT A+IV+   T +++ +     F+
Sbjct: 280 KAVFTGGPSNTLLTAKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVEFF 338

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
              SCGQC PC+ GT  + R++ R+  GI    ++  L  + + +     C L D A   
Sbjct: 339 AANSCGQCPPCKGGTFQLSRLLNRVDTGIGTPDDLRALQSLCQLLPRSGRCGLIDGAVTV 398

Query: 401 IQGLIKNF 408
           +Q  ++ F
Sbjct: 399 LQSSLRTF 406


>gi|261363678|ref|ZP_05976561.1| protein HymB [Neisseria mucosa ATCC 25996]
 gi|288568227|gb|EFC89787.1| protein HymB [Neisseria mucosa ATCC 25996]
          Length = 417

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 8/370 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99
           I+++++ + L G GGAGF T  KW     V +   H   Y+V NA+E EPGT KDR ++ 
Sbjct: 41  IVSKLQDANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158
             PH +IEG +IA+ A  A+ A +YV         S+  A+++   S L +   + LG  
Sbjct: 99  KTPHQVIEGVLIAAVACRANKAIMYVNPHQTESVASIVPAIEQWKKSDLFIRIENYLGKP 158

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +D+ +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A +P
Sbjct: 159 LDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVAGEPTLINNTETFANIP 218

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  H GG+  G  
Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S   L    +    +D+  ++E  S LGT A+IV+   T +++ +     
Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVAEYVE 336

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+   SCGQC PC+ GT  + R++ R+  GI    ++  L  + + +     C L D A 
Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396

Query: 399 WPIQGLIKNF 408
             +Q  ++ F
Sbjct: 397 TVLQSSLRTF 406


>gi|309378256|emb|CBX23118.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 417

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 8/370 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99
           I+++++ + L G GGAGF T  KW     V +   H   Y+V NA+E EPGT KDR ++ 
Sbjct: 41  IVSKLQKANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158
             PH +IEG +IA+ A  A+ A +YV         S+  A+++   S L +   + LG  
Sbjct: 99  KTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKP 158

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +D+ +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A +P
Sbjct: 159 LDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIP 218

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  H GG+  G  
Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S   L    +    +D+  ++E  S LGT A+IV+   T +++ +     
Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+   SCGQC PC+ GT  + R++ R+  GI    ++  L  + + +     C L D A 
Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396

Query: 399 WPIQGLIKNF 408
             +Q  ++ F
Sbjct: 397 TVLQSSLRTF 406


>gi|313668001|ref|YP_004048285.1| NADH dehydrogenase [Neisseria lactamica ST-640]
 gi|313005463|emb|CBN86898.1| putative NADH dehydrogenase [Neisseria lactamica 020-06]
          Length = 417

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 8/370 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99
           I+++++ + L G GGAGF T  KW     V +   H   Y+V NA+E EPGT KDR ++ 
Sbjct: 41  IVSKLQDANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158
             PH +IEG +IA+ A  A+ A +YV         S+  A+++   S L +   + LG  
Sbjct: 99  KTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKP 158

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +D+ +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A +P
Sbjct: 159 LDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIP 218

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  H GG+  G  
Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIYDHGGGMLEG-R 277

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S   L    +    +D+  ++E  S LGT A+IV+   T +++ +     
Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+   SCGQC PC+ GT  + R++ R+  GI    ++  L  + + +     C L D A 
Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396

Query: 399 WPIQGLIKNF 408
             +Q  ++ F
Sbjct: 397 TVLQSSLRTF 406


>gi|225076392|ref|ZP_03719591.1| hypothetical protein NEIFLAOT_01437 [Neisseria flavescens
           NRL30031/H210]
 gi|224952298|gb|EEG33507.1| hypothetical protein NEIFLAOT_01437 [Neisseria flavescens
           NRL30031/H210]
          Length = 417

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 8/370 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99
           I+++++ + L G GGAGF T  KW     V +   H   Y+V NA+E EPGT KDR ++ 
Sbjct: 41  IVSKLQEANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158
             PH +IEG +IA+ A  A+ A +YV         S+  A+++   S L +   + LG  
Sbjct: 99  KTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKP 158

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +D+ +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A +P
Sbjct: 159 LDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIP 218

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  H GG+  G  
Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S   L    +    +D+  ++E  S LGT A+IV+   T +++ +     
Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+   SCGQC PC+ GT  + R++ R+  GI    ++  L  + + +     C L D A 
Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396

Query: 399 WPIQGLIKNF 408
             +Q  ++ F
Sbjct: 397 TVLQSSMRTF 406


>gi|261400880|ref|ZP_05987005.1| protein HymB [Neisseria lactamica ATCC 23970]
 gi|269209226|gb|EEZ75681.1| protein HymB [Neisseria lactamica ATCC 23970]
          Length = 417

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 8/370 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99
           I+++++ + L G GGAGF T  KW     V +   H   Y+V NA+E EPGT KDR ++ 
Sbjct: 41  IVSKLQEANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158
             PH +IEG +IA+ A  A+ A +YV         S+  A+++   S L +   + LG  
Sbjct: 99  KTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKP 158

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +D+ +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A +P
Sbjct: 159 LDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVEGEPTLINNTETFANIP 218

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  H GG+  G  
Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S   L    +    +D+  ++E  S LGT A+IV+   T +++ +     
Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+   SCGQC PC+ GT  + R++ R+  GI    ++  L  + + +     C L D A 
Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396

Query: 399 WPIQGLIKNF 408
             +Q  ++ F
Sbjct: 397 TVLQSSLRTF 406


>gi|320104679|ref|YP_004180270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Isosphaera pallida ATCC 43644]
 gi|319751961|gb|ADV63721.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Isosphaera pallida ATCC 43644]
          Length = 571

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 28/355 (7%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADESEP   KDR+++   PH +IEG  +A+  +GA   ++Y+R E+  +  +++A
Sbjct: 206 YIVCNADESEPAAFKDRELLLRVPHLVIEGMTLAALTVGAEKGYLYIRHEYHDQIAAVEA 265

Query: 139 AVDECYASGLLGSNSKLGYD--VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+ E    G+LG    LG D   ++ V    G YICGE+TALLE++E ++ +PR +PP P
Sbjct: 266 ALAEARERGILGQRI-LGSDRTFELEVFISPGGYICGEQTALLEAMEDRRAEPRNRPPQP 324

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+GCPT +NNVE++A  P I  +G  WY+G G     G +  SISG V  P   E 
Sbjct: 325 MKAGLWGCPTVLNNVETLAWTPAIALKGGKWYAGLGVNGATGMRFVSISGDVKRPGVYEL 384

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA------------------GQM 298
               T  ELI KH GG++G   ++ A+ P G S   LPA                  G+ 
Sbjct: 385 PFGGTVGELI-KHAGGLKGT-QSVQAIAPSGPSGGFLPARLRVDQVSRKFAERFFTGGRT 442

Query: 299 RGAIMDYDGLKEMGSGLGT---AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +I+D    K     L     +AV+V+    +++        FY++ESCG+C PCR G+
Sbjct: 443 EMSILDLPLDKPTMRMLDVPLLSAVVVIGSEANLLDLAKNCLEFYRNESCGKCVPCRIGS 502

Query: 356 GWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             ++ + E L++  G    +  + + +++  +   +IC LG  A  P+  L+  F
Sbjct: 503 QKLVEIAEDLIQHHGAMSPQRAEAIDDLATAMIQTSICGLGQVAPLPLTTLMTYF 557


>gi|298369169|ref|ZP_06980487.1| NADH dehydrogenase I, F subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283172|gb|EFI24659.1| NADH dehydrogenase I, F subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 417

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 196/370 (52%), Gaps = 8/370 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99
           I+++++ + L G GGAGF T  KW     V +   H   Y+V NA+E EPGT KDR ++ 
Sbjct: 41  IVSKLQDANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158
             PH +IEG +IA+ A  A+ A +YV         ++  A+++   S L +   + LG  
Sbjct: 99  KTPHQVIEGVLIAAVACRANKAIMYVNPHQTESIAAIVPAIEQWKKSDLFIRIENYLGKP 158

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +D+ +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A +P
Sbjct: 159 LDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVEGEPTLINNTETFANIP 218

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  H GG+  G  
Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLEG-R 277

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S   L    +    +D+  ++E  S LGT A+IV+   T +++ +     
Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+   SCGQC PC+ GT  + R++ R+  GI    ++  L  + + +     C L D A 
Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396

Query: 399 WPIQGLIKNF 408
             +Q  ++ F
Sbjct: 397 TVLQSSLRTF 406


>gi|94313226|ref|YP_586435.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus
           metallidurans CH34]
 gi|93357078|gb|ABF11166.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus
           metallidurans CH34]
          Length = 414

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 133/368 (36%), Positives = 202/368 (54%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I E++ + LRG GGAGF+T  KW+ +    +D    ++ N +E EPGT KDR ++ H P
Sbjct: 41  VIGEIEQADLRGMGGAGFATHRKWAPV-AAAADGDKTIICNGNEDEPGTFKDRFLLEHTP 99

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDI 161
           H +IEG +IA+ A  A+   +YV     +    ++ AV +  A        +L G  + +
Sbjct: 100 HQVIEGALIAAAATRANHIVLYVNPHQQQAIAVIRQAVGQWQAHPRYAELERLLGAPLSL 159

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V   +G YI GEETA++ S+EG    PR KPPFP+  G++G P+ VNNVE++A +P IL
Sbjct: 160 GVVPSSGLYIGGEETAVIASVEGGFPFPRRKPPFPSQQGVHGAPSIVNNVETLAHIPGIL 219

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R GA WY   G  N  GTKL+S+SG V  P   E  M  + + L+ +H GG+  G +   
Sbjct: 220 RHGAQWYRDLGIGNATGTKLYSLSGDVLRPGLYELPMGTSLESLVFEHGGGMLQGKE-FK 278

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV  GG S   L    +  A +D+D ++   S LGT A+IV+   T I++ +     F+ 
Sbjct: 279 AVFTGGPSNTLLTKRDLDVA-LDFDSVRLRRSRLGTGAMIVVSEGTSIVRKVAEFVSFFA 337

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
             SCGQC PC+ G+  +MR++ R+  G     ++  L  + + + G   C L D A   +
Sbjct: 338 QGSCGQCPPCKGGSFQLMRLLNRIDTGRGVHADLAALENLCRILPGSGRCGLIDGAVTVV 397

Query: 402 QGLIKNFR 409
           +  +  FR
Sbjct: 398 ESSLHQFR 405


>gi|296314193|ref|ZP_06864134.1| protein HymB [Neisseria polysaccharea ATCC 43768]
 gi|296839149|gb|EFH23087.1| protein HymB [Neisseria polysaccharea ATCC 43768]
          Length = 417

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 196/370 (52%), Gaps = 8/370 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99
           I+++++ + L G GGAGF T  KW     V +   H   Y+V NA+E EPGT KDR ++ 
Sbjct: 41  IVSKLQEANLCGMGGAGFPTWRKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYD 158
             PH +IEG +IA+ A  A+ A +YV         S+  A+++   S L +   + LG  
Sbjct: 99  KTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIASITPAIEQWKNSDLFIRIENYLGKP 158

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +D+ +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A +P
Sbjct: 159 LDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIP 218

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  + GG+  G  
Sbjct: 219 QILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDYGGGMLEG-R 277

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S   L    +    +D+  ++E  S LGT A+IV+   T +++ +     
Sbjct: 278 TFKAVFTGGPSNTLLTVKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVE 336

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+   SCGQC PC+ GT  + R++ R+  GI    ++  L  + + +     C L D A 
Sbjct: 337 FFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLIDGAV 396

Query: 399 WPIQGLIKNF 408
             +Q  ++ F
Sbjct: 397 TVLQSSLRTF 406


>gi|241760010|ref|ZP_04758108.1| NADH-quinone oxidoreductase subunit f [Neisseria flavescens SK114]
 gi|241319464|gb|EER55894.1| NADH-quinone oxidoreductase subunit f [Neisseria flavescens SK114]
          Length = 413

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 199/373 (53%), Gaps = 18/373 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMR 99
           I+++++ + L G GGAGF T  KW     V +   H   Y+V NA+E EPGT KDR ++ 
Sbjct: 41  IVSKLQDANLCGMGGAGFPTWHKWE--AAVAAQSKHGDKYVVCNANEDEPGTFKDRVLLA 98

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA---AVDECYASGL-LGSNSKL 155
             PH +IEG +IA+ A  A+ A +Y       + ES+ A   A+++   S L +   + L
Sbjct: 99  KTPHQVIEGVLIAAVACRANKAIMY-------QTESIAAIVPAIEQWKKSDLFIRIENYL 151

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G  +D+ +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A
Sbjct: 152 GKPLDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVAGEPTLINNTETFA 211

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +P IL +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  H GG+  
Sbjct: 212 NIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLQSLIFDHGGGMLE 271

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
           G     AV  GG S   L A  +    +D+  ++E  S LGT A+IV+   T +++ +  
Sbjct: 272 G-RTFKAVFTGGPSNTLLTAKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVAE 329

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
              F+   SCGQC PC+ GT  + R++ R+  GI    ++  L  + + +     C L D
Sbjct: 330 YVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDDLRALQSLCQLLPRSGRCGLID 389

Query: 396 AAAWPIQGLIKNF 408
            A   +Q  ++ F
Sbjct: 390 GAVTVLQSSLRTF 402


>gi|261381111|ref|ZP_05985684.1| protein HymB [Neisseria subflava NJ9703]
 gi|284795911|gb|EFC51258.1| protein HymB [Neisseria subflava NJ9703]
          Length = 417

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 195/368 (52%), Gaps = 4/368 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           I+++++ + L G GGAGF T  KW + +     +   Y+V NA+E EPGT KDR ++   
Sbjct: 41  IVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKNGDKYVVCNANEDEPGTFKDRVLLAKT 100

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL-LGSNSKLGYDVD 160
           PH +IEG +IA+ A  A+ A +Y+         S+  A+++   S L +   + LG  +D
Sbjct: 101 PHQVIEGVLIAAVACHANKAILYINPHQTESIASITPAIEQWKNSDLFIRIENYLGKPLD 160

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + +   +G YI GEETA++  LEG    PR KPPFPA  G+ G PT +NN E+ A +P I
Sbjct: 161 LQLVETSGRYIGGEETAVISWLEGGFPFPRRKPPFPAESGVNGEPTLINNTETFANIPQI 220

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           L +GA WY   G  +  GTKL+S+SG V  P   E  M  T   LI  H  G+  G    
Sbjct: 221 LAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLYELPMGTTLKSLIFDHGDGMLEG-RTF 279

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AV  GG S   L A  +    +D+  ++E  S LGT A+IV+   T +++ +     F+
Sbjct: 280 KAVFTGGPSNTLLTAKDLD-VPLDFVSVRERKSSLGTGAMIVISEGTSVVRKVSEYVEFF 338

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
              SCG C PC+ GT  + R++ R+  GI    ++  L  + + +     C L D A   
Sbjct: 339 AANSCGHCPPCKGGTFQLSRLLNRVDTGIGTPDDLRALQSLCQLLPRSGRCGLIDGAVTV 398

Query: 401 IQGLIKNF 408
           +Q  ++ F
Sbjct: 399 LQSSLRTF 406


>gi|329909992|ref|ZP_08275177.1| NADH-ubiquinone oxidoreductase chain F [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546329|gb|EGF31348.1| NADH-ubiquinone oxidoreductase chain F [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 206

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/201 (48%), Positives = 130/201 (64%), Gaps = 2/201 (0%)

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           +   G   Y+G G+ NN GTK+FS+SG V  P   E  +   F  L+E   GG+R G   
Sbjct: 1   MFAMGGEAYAGLGKPNNGGTKIFSMSGDVAKPGNYEVPLGTPFATLLEL-AGGMRDG-KK 58

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           + AVIPGGSS+P L    M    MDYD + + GS LG+ AVIVMD +  ++K++ RLS F
Sbjct: 59  IKAVIPGGSSMPVLTGDVMMATDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYF 118

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           Y  ESCGQCTPCREGTGW+ R++ R+  G  +  ++DLL  ++ NI+GRTICALGDAAA 
Sbjct: 119 YYEESCGQCTPCREGTGWLYRMVHRIEHGQGRADDLDLLNSIADNIQGRTICALGDAAAM 178

Query: 400 PIQGLIKNFRPLIEERIDQYH 420
           P++ +IKNFR   E  I+  H
Sbjct: 179 PVRAMIKNFREEFEYHIEHKH 199


>gi|187926569|ref|YP_001892914.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J]
 gi|241666079|ref|YP_002984438.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D]
 gi|187728323|gb|ACD29487.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J]
 gi|240868106|gb|ACS65766.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D]
          Length = 525

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 182/324 (56%), Gaps = 14/324 (4%)

Query: 36  LEKGR----DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           LEK R      ++N V AS LRGRGGA F  G+KW  +   C++   Y+VVNADE +PG 
Sbjct: 152 LEKARRMAPQALVNMVAASRLRGRGGAAFPAGIKWQAVASACAET-KYVVVNADEGDPGA 210

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             DR ++  +P  LIE   IA+ A+GA   +IY+R E+      +  A+++   +G LG 
Sbjct: 211 FSDRFLLEEDPFRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMSHALEQARVAGWLGP 270

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
             +L    +++V  G GAYICGEET+LL +LEG++ + R +PP  +  GL+G PT V+NV
Sbjct: 271 TLEL----ELVV--GQGAYICGEETSLLNALEGRRPEVRPRPPQISECGLFGAPTLVHNV 324

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++  +P I+  GA+ Y+  G  N+RGTKL S++     P   E    I+  +++E+   
Sbjct: 325 ETLCAIPWIVTHGAAAYAALGFSNSRGTKLLSLNSLFRRPGLYEVEFGISLADVVEQLGQ 384

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G  N L V  GG     +P   +    + Y+ ++ +   +G   VI     T I +
Sbjct: 385 GLRRGKLNGLMV--GGPLAGIVPP-TLLDTRLGYEEMQTIDCAVGHGGVIAFADDTSIPR 441

Query: 332 AIWRLSVFYKHESCGQCTPCREGT 355
            + ++  F   ESCG+CTPC  GT
Sbjct: 442 IVAQVLRFGARESCGKCTPCHLGT 465


>gi|237800539|ref|ZP_04589000.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023399|gb|EGI03456.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 298

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/279 (39%), Positives = 154/279 (55%), Gaps = 6/279 (2%)

Query: 142 ECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
           E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA VG
Sbjct: 3   EAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVG 62

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTKLFSISGHVNYPCTVEESM 258
           ++G PT VNNVE++  VP I+  G  WY    RE   + GTKL   SG V  P   E   
Sbjct: 63  VWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWELPF 122

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++G+ +GT 
Sbjct: 123 GVQARELFEDYAGGMRDGF-KLKCWQPGGAGTGFLLPEHLD-AQMYAGGIAKVGTRMGTG 180

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
             + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I+ L
Sbjct: 181 LAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEMGQGQPGDIETL 240

Query: 379 YEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 241 LGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 279


>gi|309782672|ref|ZP_07677393.1| formate dehydrogenase, beta subunit [Ralstonia sp. 5_7_47FAA]
 gi|308918450|gb|EFP64126.1| formate dehydrogenase, beta subunit [Ralstonia sp. 5_7_47FAA]
          Length = 449

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 119/324 (36%), Positives = 183/324 (56%), Gaps = 14/324 (4%)

Query: 36  LEKGRDW----IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           LEK R      ++N ++AS LRGRGGA F  G+KW  +   C++   Y+VVNADE +PG 
Sbjct: 76  LEKARQMAPQALLNMMEASRLRGRGGAAFPAGIKWQAVAGACAET-KYVVVNADEGDPGA 134

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             DR ++  +P  LIE   IA+ A+GA   +IY+R E+      +  A+++   +G LG 
Sbjct: 135 FSDRFLLEDDPFRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMSHALEQARVAGWLGP 194

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
             +L    +++V  G GAYICGEET+LL +LEG++ + R +PP  +  GL+G PT V+NV
Sbjct: 195 TLEL----ELVV--GQGAYICGEETSLLNALEGRRPEVRPRPPQISERGLFGAPTLVHNV 248

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++  +P I+  GA+ Y+  G  N+RGTKL S++     P   E    I+  +++E+   
Sbjct: 249 ETLCAIPWIVTHGAAAYAALGFSNSRGTKLLSLNSLFCRPGLYEVEFGISLADVVEQLGQ 308

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+R G  N L V  GG     +P   +    + Y+ ++ +   +G   VI     T I +
Sbjct: 309 GLRRGKLNGLMV--GGPLAGIVPP-TLLDTRLGYEEMQAIDCAVGHGGVIAFADDTSIPR 365

Query: 332 AIWRLSVFYKHESCGQCTPCREGT 355
            + ++  F   ESCG+CTPC  GT
Sbjct: 366 IVAQVLRFGARESCGKCTPCHLGT 389


>gi|218260406|ref|ZP_03475735.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224534|gb|EEC97184.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii
           DSM 18315]
          Length = 400

 Score =  186 bits (471), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 105/250 (42%), Positives = 154/250 (61%), Gaps = 3/250 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +++ + ++R  +  + K L E   + +I E+  SGLRGRGG GF TG+KW    KV S +
Sbjct: 129 ENIDEYIARDGYVALGKALTEMTPESVIKEIMDSGLRGRGGGGFPTGLKWQITRKVKSPQ 188

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V NADE +PG   DR I+  +PH+++E   I  +  GA    +Y+R E+    E L
Sbjct: 189 -KYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGATKGLVYIRAEYPLAVERL 247

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ +    GLLG N     +  DI + +GAGA++CGEETAL+ S+EG +G+  +KPPF
Sbjct: 248 KIAIHQAKEYGLLGDNIFGTDFSFDIEIRYGAGAFVCGEETALIHSMEGLRGEATVKPPF 307

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P+  G  GCPT VNNVE+ A VP IL +GA W+S  G E ++GTK+F+++G VN    +E
Sbjct: 308 PSEHGYKGCPTNVNNVETYANVPVILLKGAEWFSSIGTEKSKGTKVFALAGKVNNVGLIE 367

Query: 256 ESMSITFDEL 265
             M  T  E+
Sbjct: 368 VPMGTTLREV 377


>gi|313680913|ref|YP_004058652.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977]
 gi|313153628|gb|ADR37479.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977]
          Length = 538

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/381 (35%), Positives = 192/381 (50%), Gaps = 26/381 (6%)

Query: 29  WDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           ++  D + E  G D +I  V+ +GLRG GGA F T  K   +    +D   Y+VVN DES
Sbjct: 178 FEPPDPLPEFPGADALIGAVREAGLRGLGGALFPTARKLEAVRAEAADA-KYVVVNGDES 236

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EPG  KDR +M H P  +  G  +A+ A+GA     YVRGE+      ++AA  E  ASG
Sbjct: 237 EPGNFKDRWLMEHNPRLVWAGAALAARAVGAGEIVFYVRGEYAAAHARVEAARAELEASG 296

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                      +      G G YICGEE+ALLES+EG++ +PRLKPP+PA  GL+G PT 
Sbjct: 297 YFEG-------LKTQTFRGGGLYICGEESALLESIEGRRAEPRLKPPYPAQAGLFGRPTL 349

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE++A +  I   GA  Y        R  KLFSISG V  P   E  +       +E
Sbjct: 350 VNNVETLAHLAWIAAHGAEAY------RARRPKLFSISGDVARPGVYELPLGTPLAGALE 403

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              G      ++L AV+ GG++   L         +D++  +  G  +G  A++      
Sbjct: 404 AAGGAP----EDLQAVLMGGAAGTFLRLPDAAELPLDFEAPRLSGDAVGPGALVAFGGGR 459

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           D+      ++ F+ HESCG+C  C  GT         L   +A++     L E+   +E 
Sbjct: 460 DLWAVAEGIAAFFAHESCGKCFSCSLGT-------PHLHAAVARRERGPQLEELFLALEQ 512

Query: 388 RTICALGDAAAWPIQGLIKNF 408
            ++C LG AA W ++ LI+ F
Sbjct: 513 GSLCGLGQAAPWAVRSLIRRF 533


>gi|149436181|ref|XP_001521364.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV1,
           partial [Ornithorhynchus anatinus]
          Length = 149

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 105/137 (76%), Gaps = 1/137 (0%)

Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
           IPGGSS P +P       +MD+DGL +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHE
Sbjct: 2   IPGGSSTPLIPKSVCETVLMDFDGLVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHE 61

Query: 344 SCGQCTPC-REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           SCGQCTPC R G  WM +VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+Q
Sbjct: 62  SCGQCTPCVRAGVDWMNKVMWRFVKGEARAAEIDALWEISKQIEGHTICALGDGAAWPVQ 121

Query: 403 GLIKNFRPLIEERIDQY 419
           GLI++FRP +E+R  ++
Sbjct: 122 GLIRHFRPELEQRFQRF 138


>gi|269836783|ref|YP_003319011.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745]
 gi|269786046|gb|ACZ38189.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745]
          Length = 442

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 15/367 (4%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
           N + ASGLRGRGGA F TG KW  +       P  ++VNA ESEP + KDR ++   PH 
Sbjct: 55  NLIAASGLRGRGGAAFPTGRKWHGV--AAQPAPRVVLVNAAESEPASAKDRTLLLRRPHL 112

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164
           ++EG ++A+ AI A    +Y+       R SL+ A+ E  A G+   + +       IV 
Sbjct: 113 VLEGALLAARAIDAREIVLYLHATATEVRASLELALRELRADGVQTPHFR-------IVT 165

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
              G Y+ GE +A +    G   +P  KPP P+  G+   PT V NVE++  VP I R G
Sbjct: 166 APPG-YVAGESSAAVRRANGGPAKPTFKPPRPSERGVGKRPTLVQNVETLGNVPLIARHG 224

Query: 225 ASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI 284
           A+W    G  N  GT L ++SG VN P   E    +    ++E+  GG+ GG  ++ A++
Sbjct: 225 ANWLREVGAPNLPGTLLVTLSGAVNRPGVYEVPSGVPLRHIVEELGGGVIGG-ASIQAML 283

Query: 285 PGGSSVPCL-PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST-DIIKAIWRLSVFYKH 342
            GG     L P    +GA ++ + L+  G  LG  A++V+      + +A W L  F+  
Sbjct: 284 VGGYFAGWLGPDALEQGARLEPESLRAWGVSLGAGAIVVVPNWICGLAQAAW-LMRFFAD 342

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE-VSKNIEGRTICALGDAAAWPI 401
           ES  QC  C  GT  M  V  RL++G A   E D L+    + + GR  C   D AA   
Sbjct: 343 ESAQQCGTCLYGTRAMADVFARLLRGTASPSERDRLHLWAERMLPGRGACGHLDGAAIAA 402

Query: 402 QGLIKNF 408
           +  ++ F
Sbjct: 403 RTALEVF 409


>gi|187926810|ref|YP_001893155.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J]
 gi|241665140|ref|YP_002983499.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D]
 gi|187728564|gb|ACD29728.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J]
 gi|240867167|gb|ACS64827.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D]
          Length = 480

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 113/338 (33%), Positives = 184/338 (54%), Gaps = 10/338 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + L+  +  G  D +    +     ++  V AS LRGRGGAGF  G+KW  +    +   
Sbjct: 93  RHLAAYLEVGGGDALALARQMAPHALVALVNASRLRGRGGAGFPAGVKWQAVANEAAAT- 151

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+VVNADE +PG   DR ++  +P  +IE   IA+ A+GA   ++Y+R E+    + L 
Sbjct: 152 KYVVVNADEGDPGAFSDRFLLEDDPFLVIEAAAIAAHAVGARHGYLYLRKEYPVAAQVLS 211

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+++  A+G L       ++++++V  G GAYICGEET+LL +LEG + + R +PP   
Sbjct: 212 RALEQARAAGWLAP----AFELELVV--GQGAYICGEETSLLNALEGHRPEVRPRPPQIT 265

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT V+NVE++  +P I++ GA+ Y+  G   +RGTKL S++     P   E  
Sbjct: 266 RHGLFGAPTLVHNVETLCAIPWIVKHGAAAYAALGFSGSRGTKLLSLNSLFRRPGLYEVE 325

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  +++++   G+R G   L+ ++ GG     +P   +    + Y+ ++ +   +G 
Sbjct: 326 FGITLADIVDQLGQGLRRG--RLIGLMVGGPLAGIVPPALLH-TRLGYEDMQAIDCAVGH 382

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             VI     T I + +  +  F   ESCG+CTPC  GT
Sbjct: 383 GGVIAFGDDTPIARIVAEVLRFGARESCGKCTPCHLGT 420


>gi|297714474|ref|XP_002833671.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like, partial [Pongo abelii]
          Length = 155

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 101/138 (73%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 11  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 71  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 130

Query: 122 FIYVRGEFIRERESLQAA 139
           +IY+RGEF  E  +LQ  
Sbjct: 131 YIYIRGEFYNEASNLQVG 148


>gi|225405648|ref|ZP_03760837.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme
           DSM 15981]
 gi|225042842|gb|EEG53088.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme
           DSM 15981]
          Length = 350

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/246 (40%), Positives = 153/246 (62%), Gaps = 3/246 (1%)

Query: 18  KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + + + +  G +  + K+L E   D +I  +  +GLRGRGGAGF TG+KW    +  +D+
Sbjct: 106 EDIEEYIGTGGYQALGKVLTEMTPDEVIQTLLDAGLRGRGGAGFPTGLKWKLCKQNDADQ 165

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+  NADE +PG   DR ++  +PH L+E   IA +AIG++  ++YVR E+    + L
Sbjct: 166 -KYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGSNQGYVYVRAEYPIAVDRL 224

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             A+ +     LLG N    G+D D+ +  GAGA++CGEETAL+ S+EGK+G+PR +PPF
Sbjct: 225 TIAIKQAREMELLGKNIFGTGFDFDVDIRLGAGAFVCGEETALMTSIEGKRGEPRPRPPF 284

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G P+ +NNVE+ A +P I+  G  W++  G E ++GTK+F++ G +N    VE
Sbjct: 285 PAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSKGTKVFALGGKINNTGLVE 344

Query: 256 ESMSIT 261
             M  T
Sbjct: 345 VPMGTT 350


>gi|291279649|ref|YP_003496484.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1]
 gi|290754351|dbj|BAI80728.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1]
          Length = 495

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 188/369 (50%), Gaps = 30/369 (8%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           +   + K+L   RD ++  VK S LRGRGGA F T  K+  +  + S +  YLV N DES
Sbjct: 144 YITTLTKLLSADRDDLLERVKKSDLRGRGGANFPTYKKFEAIKNINSSK-KYLVCNIDES 202

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP   KDR ++   P   + G +++++ +GA     Y+RGE+I++++ L     E  +  
Sbjct: 203 EPFVFKDRALLEINPFVAVAGAILSAYIVGATDIIFYIRGEYIKQKKILS----EITSYF 258

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           LL  +     +V+I+   GAGAY+CGEET L+ES EGK+G PR KPP+P   G++G PT 
Sbjct: 259 LLEIDFFNSLNVEIV--SGAGAYVCGEETGLIESFEGKRGNPRNKPPYPFESGIFGKPTL 316

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNN+E+++ V  +  +            N   +L S+ G V     VE  + +  +E+++
Sbjct: 317 VNNIETLSYVFEVCEKKIV---------NLNKRLISVCGDVKEKGVVEIDLDVAINEIVK 367

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
             C    G   N    I GG+S   +        + D++      S +G+  + + D S 
Sbjct: 368 NICDRTIG---NPGFAILGGASGFFVDKNNFSKKLRDFE-----KSFVGS--IFIADESR 417

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           D +  +     F+  ESCGQC PC +G   +  ++   +  +  K  ++ +  + +++  
Sbjct: 418 DKLSILKYFVSFFADESCGQCIPCYKGYQKLEEILS--INNLNDK--VEDIKSIVESMSV 473

Query: 388 RTICALGDA 396
            T C LG A
Sbjct: 474 STRCGLGKA 482


>gi|91202933|emb|CAJ72572.1| similar to NADH dehydrogenase I chain F (1st module) EC: 1.6.5.3
           [Candidatus Kuenenia stuttgartiensis]
          Length = 675

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/394 (31%), Positives = 193/394 (48%), Gaps = 23/394 (5%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW-SFMPKVCSDRPHYLVVNADESE 88
           + V K      + I+ E+ ASGLRGRGGAGF TG+KW + +   C  R  Y+V NA E E
Sbjct: 250 NAVHKARAMSPEQIVTELLASGLRGRGGAGFPTGVKWRTLVRHTCPTR--YVVCNAAEGE 307

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR ++R  P+  IEG +IA+ A+ A   +I ++  F    E ++ A+ E  + GL
Sbjct: 308 PGTFKDRYLLRKNPYATIEGMLIAAHAVNAAGIYIALKRSFGPSIERVRQAISEMASKGL 367

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           +         ++I +  G   Y+ GEE ALL  +EG    PR     P  +GL+  P + 
Sbjct: 368 MDG-------IEIKIVEGPEEYLFGEEKALLNVVEGFPPMPREAYCPPYEIGLFATPNSP 420

Query: 209 N-----NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
           N     N +++A VP+I+R G + +   G  +  GT +F++ G V  P   E    IT  
Sbjct: 421 NPALLDNAQTLAHVPSIVRHGGASFRRLGTHDTSGTLIFTVCGDVQRPGVYECEAGITLR 480

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
           +L     GG   G    +A+    S V C +          ++D  + +GSGLG+A  IV
Sbjct: 481 KLFYDVAGGPHTGRQFKVAL----SGVACGVILADRFDTPTEFDAFQMIGSGLGSAGFIV 536

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA---QKREIDLLY 379
           +D +  I +    ++ F   ESC QC  C+ G       ++ L++ +     +  +D + 
Sbjct: 537 LDNAASIPRVTQAVARFLYVESCNQCPACKAGLRTASHGIDELLQHLHLHDDRAGLDWIM 596

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           E + +      C L    A  I GL+++FR   E
Sbjct: 597 EGAHSAPQANRCFLPAQGAKLIPGLVQSFREEFE 630


>gi|256962025|ref|ZP_05566196.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           Merz96]
 gi|256952521|gb|EEU69153.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           Merz96]
          Length = 296

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/277 (36%), Positives = 154/277 (55%), Gaps = 5/277 (1%)

Query: 136 LQAAVDECYASGLLGSN--SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            Q A+D    +G LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KP
Sbjct: 1   FQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKP 60

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P  A+VGLY  PT VNNVES A VP ILR G   +   G  +  GTKL  +SGH+     
Sbjct: 61  PHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGL 120

Query: 254 VEESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
            E ++    +E+I  E++ GG   G   L  +  GG S P      +R  +  Y+ L   
Sbjct: 121 YEVNLGTPLEEIIYGEQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAH 179

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
              + + A++VMD S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A 
Sbjct: 180 DLSVSSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEAT 239

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
             ++  L ++  ++   + C LG + A P++  +  F
Sbjct: 240 ASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALF 276


>gi|218513053|ref|ZP_03509893.1| formate dehydrogenase protein, beta subunit [Rhizobium etli 8C-3]
          Length = 232

 Score =  179 bits (454), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 104/228 (45%), Positives = 133/228 (58%), Gaps = 3/228 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+ F     +   SLSD  + G    + + +      I+ EV  SGLRGRGGAG
Sbjct: 6   FLKEQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAG 65

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     +R  Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA 
Sbjct: 66  FPTGIKWKTVLDAPGER-KYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 124

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178
             FIY R E+     ++  AV     +G+LG S    G   DI V  GAGAY+CGEETAL
Sbjct: 125 KGFIYTRSEYPHAIAAMSEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 184

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA+
Sbjct: 185 LNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAA 232


>gi|73982781|ref|XP_864339.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 6 [Canis familiaris]
          Length = 137

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 80/118 (67%), Positives = 97/118 (82%)

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +V
Sbjct: 9   LMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKV 68

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           M R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 69  MARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 126


>gi|168702047|ref|ZP_02734324.1| NADH dehydrogenase (quinone) [Gemmata obscuriglobus UQM 2246]
          Length = 686

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/436 (29%), Positives = 200/436 (45%), Gaps = 74/436 (16%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++ E+K + L G GGAG     KW  + +   +   Y+V N DESEPGT KDR+I+   P
Sbjct: 241 LLWELKTANLLGMGGAGAPAYQKWLDVWQQPGNE-KYIVCNGDESEPGTFKDREILLRMP 299

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H ++EG ++A    GA    IYVR E+  +  +L+  +      G  G N    G +  +
Sbjct: 300 HLVVEGVILAGLMTGATSGHIYVRHEYFEQIHALKEEIKRAQELGACGPNIFGSGRNFPV 359

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V    G YICGE++AL+E++E ++GQPR +PP  +  G    PT VNNVE++A  P I+
Sbjct: 360 EVFESPGGYICGEQSALIEAMEDRRGQPRNRPPELSANGFRDKPTVVNNVETLAWAPGII 419

Query: 222 RRGASWYSGFG-------RENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCGG 272
             G   Y   G       +    G +LFS+SG V  P   E ++ +T  EL   +K+CGG
Sbjct: 420 LFGGDKYEMGGWRLATDPKIKFGGRRLFSVSGDVARPGVYEVAIGLTLGELFNGDKYCGG 479

Query: 273 IRGGWDNLLAVIPGGSSVPC--------------------------------------LP 294
           I G    + A  P G  VP                                       LP
Sbjct: 480 ITGPLRAVAASGPSGGLVPAKLPVDPKFDAKKRADAVARIRDRSAQDADFMEWFLNTHLP 539

Query: 295 AGQMRGAI----MDYDGLKEMGSGLGT-------AAVIVMDRSTDIIKAIWRLSVFYKHE 343
            G     +    +D +  + +   L         AA+ V     D++      + FY++E
Sbjct: 540 LGATELDVLKIPLDLNFFRHLNGALRLPVEAMLGAAITVYAGDVDVLDQAVNYTQFYRNE 599

Query: 344 SCGQCTPCREGTGWMMRVMERLVKG-----------IAQKREIDLLYEVSKNIEGRTICA 392
           SCG+C PCR G+  ++++ E L+K             A K+++    E++K ++  +IC 
Sbjct: 600 SCGKCVPCRLGSQKLVQIGEGLLKSRRAGRLPADDLAAIKKDVK---EITKTLQLTSICG 656

Query: 393 LGDAAAWPIQGLIKNF 408
           LG  A  P+   ++ F
Sbjct: 657 LGYVAPIPLATALEYF 672


>gi|323168546|gb|EFZ54226.1| NADH-quinone oxidoreductase subunit F domain protein [Shigella
           sonnei 53G]
 gi|323171966|gb|EFZ57610.1| NADH-quinone oxidoreductase subunit F domain protein [Escherichia
           coli LT-68]
          Length = 248

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 131/209 (62%), Gaps = 12/209 (5%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF---PANVGLYGCPTTVNNVESIAV 216
           ++ VH GAG YICGEETAL+ SLEG++  PR KPP    PA    YG     N   S   
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPSRQPPA----YGA----NRPVSTTS 219

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSIS 245
            P +  R +S  +  G   +R  K+ + S
Sbjct: 220 KPCVTFRRSSLTAWSGIRTSRKVKMLAPS 248


>gi|224826606|ref|ZP_03699707.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002]
 gi|224601207|gb|EEG07389.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002]
          Length = 332

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/263 (36%), Positives = 153/263 (58%), Gaps = 12/263 (4%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L+D ++RG      + +    + +   V+ SGLRGRGGAGF  G KW  +    +DR  Y
Sbjct: 43  LADYVTRGGGTARQRAMAMAPEELRRAVEMSGLRGRGGAGFPAGRKWQAVAAQPADR-KY 101

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           LVVNADE +PG   DR ++  +P  ++E  +IA+  +GA   +IY+R E+      L  A
Sbjct: 102 LVVNADEGDPGAFSDRFLLEDDPFRVLEAMIIAAHGVGAGQGYIYLRKEYPLAGARLAEA 161

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +++   +G LG      +DV++++  GAG+Y+CGEETALL +LEG++ + RL+PP  +  
Sbjct: 162 IEQARRAGWLGER----FDVELVI--GAGSYLCGEETALLNALEGRRPEVRLRPPQISEC 215

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GL+G PT ++NVE++  +P ++  GA  Y+  G   +RGTKL S++   + P   E    
Sbjct: 216 GLFGAPTLLHNVETLCALPWVVEHGAVAYAALGFSLSRGTKLLSLNSLFSRPGLYEVEFG 275

Query: 260 ITFDELIEKHCGGI-----RGGW 277
           +   E+++K  GG      RG W
Sbjct: 276 LPLSEVVDKLGGGCAAVVSRGSW 298


>gi|331663799|ref|ZP_08364709.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit
           F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143]
 gi|331059598|gb|EGI31575.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit
           F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143]
          Length = 248

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 98/209 (46%), Positives = 131/209 (62%), Gaps = 12/209 (5%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDV 159
            PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +GLLG N    G+D 
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 167

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF---PANVGLYGCPTTVNNVESIAV 216
           ++ VH GAG YICGEETAL+ SLEG++  PR KPP    PA    YG     N   SI  
Sbjct: 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPSRQPPA----YGA----NRPVSITS 219

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSIS 245
            P +  R +   +  G   +R  K+ + S
Sbjct: 220 KPCVTFRRSLLTAWSGIRTSRKVKMLAPS 248


>gi|325968336|ref|YP_004244528.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707539|gb|ADY01026.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta
           moutnovskia 768-28]
          Length = 516

 Score =  176 bits (445), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 125/402 (31%), Positives = 202/402 (50%), Gaps = 20/402 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKAS-GLRGRGGAGFSTGMKWSFMPKVCS 74
           Q + L   ++R  +   +K L +G  ++I E+    GL G G       +  +      +
Sbjct: 123 QYEPLDKYIARSGYRYFEKFLNEGNKFLILELLVKVGLLGGGALTRLKALASN------A 176

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           DRP YL+VN  E EPG  KDR IM    H L+EG ++ S A+      I V   F   + 
Sbjct: 177 DRPKYLIVNGHEGEPGGFKDRLIMERNTHQLLEGALLLSLALNVDEVIIAVNERFRNAKA 236

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            ++ A+DE      L +   L     I V      YI GEETAL+ S+EG +G+PRL+PP
Sbjct: 237 VIERALDELRT--FLTNRDLLSKLPPITVSLIGSPYIVGEETALINSIEGGRGEPRLRPP 294

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            P   GL+G PT V NVE  A +P +L   +++Y G   +     K F ++G V+ P   
Sbjct: 295 DPTEAGLFGKPTAVINVEVAAAIPILL---SNYYEG---KEITIEKYFCVTGDVDRPGLY 348

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
            E ++I  +EL+ K   G +   +N+ AV  GG S   + + +++  +   +  +++G  
Sbjct: 349 REKLTIGLNELLVK--AGAK--EENVKAVFVGGVSSGLVHSSRIKVRLTPEEA-RKLGVF 403

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG   +I +  S  I+  +  +  F+ HESCG+C PCR GT  ++ ++ER+  G A + +
Sbjct: 404 LGPGVIIALSNSRCIVDVMLEVERFFAHESCGRCEPCRLGTRELVNILERISNGKANEED 463

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +     V+K +   ++C LG +A   +   +  FR   EE +
Sbjct: 464 LKWAESVAKTMMDTSLCGLGMSAGKVLLDALSQFRDEFEEHV 505


>gi|300697561|ref|YP_003748222.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           CFBP2957]
 gi|299074285|emb|CBJ53832.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           CFBP2957]
          Length = 451

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/369 (33%), Positives = 197/369 (53%), Gaps = 16/369 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++N V+ S LRGRGGAGF  G+KW       S R  Y+VVNADE +PG   DR ++  +P
Sbjct: 89  LVNMVRDSRLRGRGGAGFPAGIKWQATANE-SARTKYVVVNADEGDPGAFSDRFLLEDDP 147

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             LIE   IA+ A+GAH  +IY+R E+      L  A++E  A+G L       + ++++
Sbjct: 148 FRLIEAVAIAAHAVGAHGGYIYLRKEYPAAARVLARALEEARAAGWLPP----AFALELV 203

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           V  G GAY+CGEET+LL +LEG++ + R +PP     GL+G PT V+NVE++  +P I+ 
Sbjct: 204 V--GRGAYLCGEETSLLNALEGRRPEVRPRPPQITRQGLFGAPTLVHNVETLCAIPWIVT 261

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
            GA+ Y+  G   +RGTKL S++     P   E    IT  +++E+   G+  G   L  
Sbjct: 262 HGAAAYAALGFSQSRGTKLLSLNSLFRRPGLYEAEFGITLADIVERLGQGLHRG--RLKG 319

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
           ++ GG     +P  ++    + Y+ ++ +   +G   VI     T + + +  +  F   
Sbjct: 320 LMVGGPLAGIVPP-ELLHTRLGYEEMQAIDCAVGHGGVIAFADDTPVARIMAEVLRFGAR 378

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKG--IAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           ESCG+CTPC  G   +  +      G  I + R   L+  +++     ++C  G   A  
Sbjct: 379 ESCGKCTPCHLGAPILAAMAAAAADGGPIDRGRWQRLVTALAQT----SLCGHGRGLAEF 434

Query: 401 IQGLIKNFR 409
           +Q + +++R
Sbjct: 435 VQSVQRHYR 443


>gi|323718239|gb|EGB27419.1| hypothetical protein TMMG_02286 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 228

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 127/202 (62%), Gaps = 3/202 (1%)

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  EL++
Sbjct: 2   INNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLD 61

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
            + GG+R G   L    PGGSS P L    +    +DY+G+   GS LGT A+ + D +T
Sbjct: 62  -YAGGVRAG-HRLKFWTPGGSSTPLLTDEHLD-VPLDYEGVGAAGSMLGTKALEIFDETT 118

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G     +ID L ++S +I G
Sbjct: 119 CVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDSILG 178

Query: 388 RTICALGDAAAWPIQGLIKNFR 409
           ++ CALGD AA P+   IK+FR
Sbjct: 179 KSFCALGDGAASPVMSSIKHFR 200


>gi|116672201|ref|YP_833134.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24]
 gi|116612310|gb|ABK05034.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24]
          Length = 566

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/369 (33%), Positives = 188/369 (50%), Gaps = 13/369 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+  V+A+ LRGRGGAGF    KW     +    P  +V N DE +PG+  DR +M  + 
Sbjct: 201 ILLRVEAAQLRGRGGAGFRAAAKWRA--ALDHPAPRVVVANGDEGDPGSYADRLLMEQDA 258

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H ++EG V+A FA+GA    ++VR E+      L+ A+ E   +G LG + +  G+ +++
Sbjct: 259 HRVLEGLVLACFAVGATTGIVFVRSEYPLAAARLRNALHEARRAGHLGPDIAGSGFSLEV 318

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V  GAG+Y+ GEETALL  L G +G  R +PPFP   G +G PT VNNVE++  VP I+
Sbjct: 319 RVAEGAGSYVSGEETALLNGLAGLRGVVRPRPPFPTERGFHGRPTVVNNVETLCAVPWIV 378

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           + G   Y+  G  +  GT +  +S     P   E  +      ++E+  GG+RGG   L 
Sbjct: 379 QHGGPAYAALGTSDEAGTVIACLSERFLRPGAYEVEIGTPVRRIVEELGGGLRGG-ATLR 437

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A+  GG     L    +   + D   L   G+ LG A ++  D      + +  L  F  
Sbjct: 438 AIQIGGPLGGFLGPDDLDVPLSD-TALARHGAALGHAGIVAFDDRLSGEQVLRNLWDFAA 496

Query: 342 HESCGQCTPCREGTGWMMRVMERL--VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
            ESCGQC+PCR GT W  R +  L     +  +R      +V + +   ++CA G     
Sbjct: 497 AESCGQCSPCRVGT-WRGRALAELPDAPDVGSERG-----DVLRTMAAGSLCAFGRRVPA 550

Query: 400 PIQGLIKNF 408
            ++ L++ +
Sbjct: 551 AVRSLVRVY 559


>gi|51894238|ref|YP_076929.1| NADH dehydrogenase subunit [Symbiobacterium thermophilum IAM 14863]
 gi|51857927|dbj|BAD42085.1| NADH dehydrogenase subunit [Symbiobacterium thermophilum IAM 14863]
          Length = 394

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 134/385 (34%), Positives = 199/385 (51%), Gaps = 34/385 (8%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST--GMKWSFMPKVCSD 75
           + L+   +RG +  ++    +G  W++ +V  +GLRGRGG+G     G KW    +V + 
Sbjct: 14  EDLAAYRARGGYAGLEAARTRGSGWVLEQVTRAGLRGRGGSGDGRPIGQKWQ---RVAAS 70

Query: 76  R--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           R    Y+V NA ES+  + KDR ++   PH ++EG +IA+ A+GA  A++YVRG+     
Sbjct: 71  RVPERYVVANAAESQAVSRKDRYLLARFPHRVLEGLLIAAQALGAREAYLYVRGDSPEAL 130

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +  + AV E  A+GLLG        V + V   A   + GEETA+L++LEG +G P+ KP
Sbjct: 131 DGARDAVAEAGAAGLLGG-------VSVTVQPSAPTAVSGEETAILDALEGLEGYPQPKP 183

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P P  +GL G PT V N ES+A V  + R G       G     GT LF+++G V+ P  
Sbjct: 184 PRPEEIGLRGRPTLVQNAESLAAVAALFRLGVDRVRAVGTPTCPGTALFTVTGAVDRPGV 243

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD----YDGLK 309
            E        +L+       R   + +LAV+PGG     L +G +R   +D    Y+ L 
Sbjct: 244 YEVPHGTPLAQLLALAGAPPR---EEILAVLPGG-----LGSGPLRPDELDVPLTYEDLA 295

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            +GS LG +AV+V  R+   +  + R +V      SCGQC  CREG   ++R +E     
Sbjct: 296 ALGSSLGNSAVVVFRRADATLPDLVRENVALLARGSCGQCRGCREGHEGLLRALEAGDAT 355

Query: 369 IAQKREIDLLYEVSKNIEGRTICAL 393
            A++R   LLY       GR  CA 
Sbjct: 356 EARRRAEVLLY-------GRGNCAF 373


>gi|47216621|emb|CAG05422.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 179

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/131 (64%), Positives = 99/131 (75%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 46  LADEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGVDWILNEIKVSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMR++PH L+EGC++A  A+GA  A
Sbjct: 106 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAA 165

Query: 122 FIYVRGEFIRE 132
           +IY+RGEF  E
Sbjct: 166 YIYIRGEFYNE 176


>gi|213400751|gb|ACJ47024.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Ctenocephalides canis]
          Length = 124

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 77/123 (62%), Positives = 97/123 (78%), Gaps = 1/123 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI A  A+IY+RGEF  E   L+AA++E Y  GL+G N+ K GY++D+ +H GAG
Sbjct: 2   LLAGKAISASAAYIYIRGEFYNEYLILKAALEEAYQKGLIGQNACKSGYNLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IAVVP ILRRG  W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAVVPDILRRGGEWF 121

Query: 229 SGF 231
           +  
Sbjct: 122 ASL 124


>gi|273160844|gb|ACZ97596.1| mitochondrial complex I subunit [Psalteriomonas lanterna]
          Length = 147

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 99/146 (67%)

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
           CGG+RGGWDNLLAVIPGGSS   LP       +MD+D L  + S  GTA+++VMD+STDI
Sbjct: 1   CGGVRGGWDNLLAVIPGGSSTAPLPKKVCDSVLMDFDSLAAVNSSFGTASILVMDKSTDI 60

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           +KA  R + FYK ESCGQCTPCREG  W+  +M+   KG  +  +ID L +  ++I GR+
Sbjct: 61  VKAFARQAHFYKEESCGQCTPCREGMHWITDMMDSFAKGEGKLEDIDFLMDTCQHISGRS 120

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEER 415
           ICAL D  A  I GLI N RP +E +
Sbjct: 121 ICALADGGAQGIIGLINNSRPFLEAK 146


>gi|298244918|ref|ZP_06968724.1| NADH dehydrogenase (quinone) [Ktedonobacter racemifer DSM 44963]
 gi|297552399|gb|EFH86264.1| NADH dehydrogenase (quinone) [Ktedonobacter racemifer DSM 44963]
          Length = 443

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 210/390 (53%), Gaps = 10/390 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + L+   S G +  ++  L +   + II +V  + LRGRGGAG  TG KW  + +   D 
Sbjct: 20  RGLAAYRSAGGYSALESALRQNTPNQIIQQVTDARLRGRGGAGRLTGEKWRVV-RSTDDD 78

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ NA +++  +   R ++ + PH +IEG ++A++A+GA  A+++ R  +    +++
Sbjct: 79  QKYVICNAYDADSRSLAARLLLEYNPHQVIEGIILAAYAVGASEAYLFTRSLYKEGIQTV 138

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAG--AYICGEETALLESLEGKKGQPRLKPP 194
           QAA+ E   + L+G +  LG D    +   A    +I GEET  + +++G++G P  +PP
Sbjct: 139 QAALQEALEANLVGRDI-LGTDFSCTISVVAVDLGFIGGEETVQIAAIKGRRGMPEQRPP 197

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI--SGHVNYPC 252
           FPA  GL+  PT +N+VE++A VP I+R G   ++  G     G+K+ ++  +G  + PC
Sbjct: 198 FPAQYGLWDKPTAINSVETLANVPVIVREGPGAFAQTGTSITGGSKILTVYGAGAESEPC 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            +E     T  +++ +   G+    +++  V+ GG+    LP   +   I DYD ++  G
Sbjct: 258 VIEVPFGTTIRDILTR--AGVNASANDIRGVVVGGAEGGALPP-SLLDTIFDYDPIEAAG 314

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           + +G+  + V+   T ++      S +   ESCG+C PCR G   +  ++E +V  +   
Sbjct: 315 AIVGSGVIEVLPVDTCMVAWAMERSRYLSKESCGKCVPCRLGVKRITGILEGVVSDLGVN 374

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
            ++D+L E ++ +   ++C  G  A  P++
Sbjct: 375 GDLDVLDEFAQYVPNGSLCGFGVQATNPLK 404


>gi|169666458|gb|ACA63844.1| NADH:ubiquinone oxidoreductase NADH-binding 51kD subunit
           [Aphanomyces astaci]
          Length = 172

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 80/134 (59%), Positives = 98/134 (73%), Gaps = 1/134 (0%)

Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMG-SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
           PGGSSVP +     +   MD+D LK  G SGLGTAAV + D+S D++ AI RLS FY HE
Sbjct: 1   PGGSSVPVMDEATCQNIHMDFDDLKNTGGSGLGTAAVTIFDKSVDMVGAIRRLSHFYTHE 60

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403
           SCGQCTPCREGTGWM  ++ R+  G A+  EI +L E+S+ IEG TICALGDAAAWP+QG
Sbjct: 61  SCGQCTPCREGTGWMESILTRMETGNAELEEIPMLEEISRQIEGHTICALGDAAAWPVQG 120

Query: 404 LIKNFRPLIEERID 417
           LIK F+  + ERI+
Sbjct: 121 LIKRFKHKLVERIE 134


>gi|11545457|gb|AAG37857.1|AF298190_7 NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium
           meliloti]
          Length = 280

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/266 (36%), Positives = 149/266 (56%), Gaps = 5/266 (1%)

Query: 145 ASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
           A+G+LG+ S LG  +  D+ V  GAGAY+CGEET+LL SLEGK+G  R KPP PA+ GL+
Sbjct: 4   AAGVLGA-SVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLPAHKGLF 62

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
             PT +NNV S+A VP IL +GA +Y  FG   +RGT    I+G+V +    E +  +T 
Sbjct: 63  DRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRGTIPLQIAGNVKHGGLFETAFGLTL 122

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            E++++  GG       + AV  GG      P   +     DY+        +G A ++V
Sbjct: 123 GEIVDEIGGGTASARP-VKAVQVGGPLGAYFPR-ALFDTPFDYEAFAARDGLIGHAGIVV 180

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
            D + D++K       F   ESCG+CTPCR G+   + V +R+  GI  ++  +LL ++ 
Sbjct: 181 FDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVEVADRIAAGIEPEKNRELLADLC 240

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNF 408
             ++  ++CALG    +P+   + +F
Sbjct: 241 NTMKFGSLCALGGFTPYPVMSAMTHF 266


>gi|329912138|ref|ZP_08275695.1| NAD-reducing hydrogenase hoxS subunit alpha [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545684|gb|EGF30831.1| NAD-reducing hydrogenase hoxS subunit alpha [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 274

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 137/251 (54%), Gaps = 12/251 (4%)

Query: 166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGA 225
           GAGAYICG+ETAL+ESLEGK+G PR+KPP+P N+G  G PT+ NNVE+ A V  I+  GA
Sbjct: 2   GAGAYICGDETALIESLEGKRGTPRVKPPYPVNMGYLGKPTSANNVETFAAVAAIIEHGA 61

Query: 226 SWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285
           SW+   G   + GT+L SISG  + P   E +  IT  +++ K   G R  W   ++  P
Sbjct: 62  SWFKAMGTAESTGTRLLSISGDCSAPGIYEIAWGITLADVLAK--AGARDPWAVQVSG-P 118

Query: 286 GGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESC 345
            G  V     GQ   A+ D              + ++ DRS D++  + +   F+ +ESC
Sbjct: 119 SGDCVSVEKDGQRAIALEDLS---------CNGSFMIFDRSRDLLDIVSQFMQFFVNESC 169

Query: 346 GQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           G C PCR G   + + + R++ G A ++++D +    K +   + C LG  +  PI   +
Sbjct: 170 GICVPCRSGNVDLFKKINRVIDGKACQKDLDEVVVWGKLVRKTSRCGLGGTSPKPILTTL 229

Query: 406 KNFRPLIEERI 416
           +NF  L   ++
Sbjct: 230 QNFPELYAAKL 240


>gi|213400747|gb|ACJ47022.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Zootermopsis angusticollis]
 gi|213400749|gb|ACJ47023.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Zootermopsis nevadensis]
          Length = 124

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 96/121 (79%), Gaps = 1/121 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI A  A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GAG
Sbjct: 2   LLAGRAISASVAYIYIRGEFYNEYLVLKKALEEAYKEGLVGKNACKSGYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP ILRRG  W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILRRGGEWF 121

Query: 229 S 229
           +
Sbjct: 122 A 122


>gi|213400735|gb|ACJ47016.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 124

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/123 (59%), Positives = 93/123 (75%), Gaps = 1/123 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI A  A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAG
Sbjct: 2   LLAGRAINASAAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA  ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W+
Sbjct: 62  AYICGEETAQFESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAIVPDILNRGGEWF 121

Query: 229 SGF 231
           +  
Sbjct: 122 ASL 124


>gi|213400739|gb|ACJ47018.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Litomosoides sigmodontis]
          Length = 124

 Score =  163 bits (413), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 95/121 (78%), Gaps = 1/121 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI    A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GAG
Sbjct: 2   LLAGRAISTSVAYIYIRGEFYNEYLVLKQALEEAYKEGLIGKNACKSGYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPANVGL+GCPT +NNVE+IA+VP ILRRG  W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRMKPPFPANVGLFGCPTMINNVETIAMVPDILRRGGEWF 121

Query: 229 S 229
           +
Sbjct: 122 A 122


>gi|167830014|ref|ZP_02461485.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 9]
          Length = 273

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/262 (35%), Positives = 146/262 (55%), Gaps = 6/262 (2%)

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           G+LG+     +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP PA  GL+  PT
Sbjct: 1   GVLGT----AHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLPALSGLFAKPT 56

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            +NNV ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE +  +T  EL+
Sbjct: 57  VINNVITLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVELAFGVTLRELL 116

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
               GG   G     A + GG     LP GQ     +DY+    +G+ +G   +++ D +
Sbjct: 117 FDFGGGTASGRPARAAQV-GGPLGTYLPEGQWD-IPLDYEAYAAVGAVVGHGGIVLHDDT 174

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
           +++ +       F   ESCG+CTPCR G+   +  + R+  G   +R++ LL ++   + 
Sbjct: 175 SNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVRLLRDLCDTMT 234

Query: 387 GRTICALGDAAAWPIQGLIKNF 408
             ++CA+G    +P+   + +F
Sbjct: 235 AGSLCAMGGMTPYPVLSALDHF 256


>gi|213400743|gb|ACJ47020.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Nasutitermes nigriceps]
          Length = 124

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/121 (62%), Positives = 97/121 (80%), Gaps = 1/121 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI A  A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GAG
Sbjct: 2   LLAGRAICASIAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPA+VGL+GCPTT+NNVE+IA+VP ILRRG  W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRMKPPFPASVGLFGCPTTINNVETIAMVPDILRRGGEWF 121

Query: 229 S 229
           +
Sbjct: 122 A 122


>gi|289807699|ref|ZP_06538328.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 211

 Score =  162 bits (410), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 84/210 (40%), Positives = 117/210 (55%), Gaps = 2/210 (0%)

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           +  H AG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP IL
Sbjct: 2   VCPHRAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAIL 61

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             G  WY    +  + GTKL   SG V  P   E        E++E + GG+R G     
Sbjct: 62  ANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL-KFK 120

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F+ 
Sbjct: 121 AWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFA 179

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
            ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 180 RESCGWCTPCRDGLPWSVKILRALERGEGQ 209


>gi|213400745|gb|ACJ47021.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Coptotermes acinaciformis]
          Length = 124

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 95/120 (79%), Gaps = 1/120 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI A  A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GAG
Sbjct: 2   LLAGRAICASVAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP ILRRG  W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILRRGGEWF 121


>gi|758215|emb|CAA88752.1| unknown [Brevundimonas diminuta]
          Length = 401

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 184/376 (48%), Gaps = 12/376 (3%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           +  + ++  + L G+GGA F +  K     +  + R  YLVVN  E EPG+ KD  ++ H
Sbjct: 37  EAFLAQIDQAQLSGKGGANFPSARKMRLFHQQAAPR-KYLVVNGGEHEPGSAKDDWLLLH 95

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            P T+IEG +  + A+GA    + V         +++ A      +G L      G +V 
Sbjct: 96  HPDTVIEGALCVAHALGATHILVAVNEGRAATVAAVREAAAAIAIAGRLFP----GIEVV 151

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           ++       Y+ GEETALL+++ G+  +P  +PP+P   G  G PT V+NVE++A VP +
Sbjct: 152 LVPDE----YVVGEETALLQAVAGQVAKPVRRPPYPIESGHQGMPTLVHNVETLAHVPYL 207

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           L  GA  Y G G    +G  L +      +       + I  + L+  + GG++ G   +
Sbjct: 208 LLLGAEAYRGLG-APGQGVTLCTFGEEFVHAGVRLVPVGIDLNSLLYGYGGGLKSG-QAI 265

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            AV PGG +   LPA +   A  D   L+  GS LG AA+     S D++ A  + + F+
Sbjct: 266 RAVQPGGPASGFLPADRFDVA-FDSASLRAAGSSLGCAAITAYAASDDLVAAARQRAAFF 324

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
              SC QC  CR  T  ++ ++ +L  G A  R +  +  + K   G+ IC L D    P
Sbjct: 325 ASASCEQCPQCRMQTQMLLAIVRQLESGKANARTLQQIPVIVKANAGKAICGLIDMPVAP 384

Query: 401 IQGLIKNFRPLIEERI 416
           IQ LI  F+  I+ R+
Sbjct: 385 IQSLIHYFKGDIDARM 400


>gi|218678493|ref|ZP_03526390.1| NADH dehydrogenase (quinone) [Rhizobium etli CIAT 894]
          Length = 272

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/253 (36%), Positives = 139/253 (54%), Gaps = 2/253 (0%)

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G   DI V  GAGAY+CGEETALL SLEGK+G  R KPP PA+ GL+  PT +NNV S+A
Sbjct: 8   GRAFDIEVRTGAGAYVCGEETALLNSLEGKRGVVRAKPPLPAHKGLFDRPTVINNVISLA 67

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            VP I+ +GA++Y  FG   +RGT    I+G+V Y    E +  ++  ++I++  GG   
Sbjct: 68  SVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYGGLYETAFGLSLGDIIDRIGGGTAT 127

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
           G   + AV  GG      P   +     DY+        +G A ++V D + D++K    
Sbjct: 128 GRP-VKAVQVGGPLGAYFPR-ALFDTPFDYEAFAAKDGLIGHAGLVVFDDTADMLKQARF 185

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
              F   ESCG+CTPCR G+   +   +++  GI  ++   LL ++   ++  ++CALG 
Sbjct: 186 AMEFCAVESCGKCTPCRIGSTRGVETADKIAHGIEPEKNRALLADLCNTMKFGSLCALGG 245

Query: 396 AAAWPIQGLIKNF 408
              +P+   + +F
Sbjct: 246 FTPYPVMSAMTHF 258


>gi|213400729|gb|ACJ47013.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia
           longicornis]
          Length = 124

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 95/121 (78%), Gaps = 1/121 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI A  A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GAG
Sbjct: 2   LLAGKAISASVAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWF 121

Query: 229 S 229
           +
Sbjct: 122 A 122


>gi|301061235|ref|ZP_07202017.1| NADH-quinone oxidoreductase subunit F family protein [delta
           proteobacterium NaphS2]
 gi|300444554|gb|EFK08537.1| NADH-quinone oxidoreductase subunit F family protein [delta
           proteobacterium NaphS2]
          Length = 293

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 10/216 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRH 100
           I   V  SGL+GRGGAGF  G KW  +P    D PH  Y+V N DE EPGT KDR ++  
Sbjct: 45  IKKTVLDSGLQGRGGAGFPAGKKWQLLP---DDAPHPRYIVANTDEMEPGTFKDRLLLSV 101

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-- 158
            PHT+IEG +IA +A  A   + ++R  + +     + A+ E  A+G LG    LG D  
Sbjct: 102 HPHTVIEGMIIAGYANSAEKGYFFIRPSYQQIALKFENALSEARAAGFLGQQI-LGSDFS 160

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            +I+VH  AG YICGE   L+ +L+G++  P ++       GL+G PT VNN E++A VP
Sbjct: 161 FEIVVHRSAGRYICGEAKGLIHALQGERPHPNIEGHL-TEEGLWGRPTIVNNAETLAYVP 219

Query: 219 TILRRGASWYSGFGRENNR-GTKLFSISGHVNYPCT 253
            I+R GA W+   G+ +   G K++S+ G V  P +
Sbjct: 220 HIVRNGAEWFRDLGKHDKAPGNKIYSVCGRVRRPVS 255


>gi|213400741|gb|ACJ47019.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Folsomia
           candida]
          Length = 124

 Score =  160 bits (405), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 94/121 (77%), Gaps = 1/121 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           V+A  AI A  A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GAG
Sbjct: 2   VLAGKAINASAAYIYIRGEFYNEYLILKEALEEAYKEGLIGKNACKSGYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+I +VP IL RG  W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIPMVPDILTRGGEWF 121

Query: 229 S 229
           +
Sbjct: 122 A 122


>gi|213400731|gb|ACJ47014.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia
           vitripennis]
          Length = 124

 Score =  159 bits (403), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 94/121 (77%), Gaps = 1/121 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI A  A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAG
Sbjct: 2   LLAGKAISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWF 121

Query: 229 S 229
           +
Sbjct: 122 A 122


>gi|120405123|ref|YP_954952.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957941|gb|ABM14946.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Mycobacterium vanbaalenii PYR-1]
          Length = 430

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 183/385 (47%), Gaps = 31/385 (8%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMR 99
           D + +E+  +G+ GRGGA F   +K S + +   S R   LV N +E EP + KDR ++R
Sbjct: 47  DALHDEIARAGVLGRGGAAFPLAVKLSTVRRAHQSGRDTVLVANGEEGEPASVKDRWLLR 106

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
           H PH +++G  +A+  IGA    +YV  +  R   ++ AA+DE     L G        V
Sbjct: 107 HRPHLVLDGLRLAARIIGARHTHVYVSDD--RAAAAVLAALDEITPDALDG--------V 156

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            + VH  A  Y+ GEETA + ++ G   +P  KPP P   G+ G PT V+NVE++A +P 
Sbjct: 157 TVSVHTVAPGYVAGEETAAVRAINGGPAKPTDKPPRPFEEGVGGLPTVVSNVETLANLPY 216

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC-------GG 272
           + R  A+ Y   G + + GT L +++G    P   E        ELI  H        G 
Sbjct: 217 VHRHDAAAYRELGTDGSPGTFLATLTGGGRPPGLYEIPFGTAAAELIALHGVPAERVRGA 276

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           + GG+               L   ++ G ++D++ L+ +GSGLG  AV V+     +   
Sbjct: 277 LMGGY------------FAGLVDRRILGGVLDHESLRGLGSGLGCGAVSVITDECPVAVG 324

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
              L+ +Y  E+ GQC  C  GT  M      L  GIA   ++  L   S+ + GR  CA
Sbjct: 325 ASVLA-YYDRENAGQCGSCFNGTAAMSAAATALRDGIADGEDLARLRRWSEVLRGRGACA 383

Query: 393 LGDAAAWPIQGLIKNFRPLIEERID 417
             DAA      ++  F   +   +D
Sbjct: 384 TLDAACNIAASMLAMFPEEVARHLD 408


>gi|213400733|gb|ACJ47015.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Armadillidium vulgare]
          Length = 124

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 94/121 (77%), Gaps = 1/121 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  A+ A  A+IY+RGEF +E   L+ A++E Y   L+G N+ K GYD+D+ +H GAG
Sbjct: 2   LLAGRAVSASVAYIYIRGEFYKEYLVLKKALEEAYEENLIGKNACKSGYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL  G  W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRVKPPFPAGVGLFGCPTTINNVETIAMVPDILNHGGEWF 121

Query: 229 S 229
           +
Sbjct: 122 A 122


>gi|213400753|gb|ACJ47025.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Dipetalonema gracile]
          Length = 124

 Score =  156 bits (395), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 94/121 (77%), Gaps = 1/121 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI A  A+IY+RGEF  E   L+ ++ E Y  GL+G N+ K  Y++D+ +H GAG
Sbjct: 2   LLAGKAINASTAYIYIRGEFYNEYLVLKKSLKEAYKEGLIGKNACKSDYNLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGK+G PR+KPPFPA VGL+GCPTT+NNVE+IA++P ILRRG  W+
Sbjct: 62  AYICGEETAQLESIEGKRGFPRIKPPFPAEVGLFGCPTTINNVETIAMIPDILRRGGEWF 121

Query: 229 S 229
           +
Sbjct: 122 A 122


>gi|330945472|gb|EGH47027.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 204

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 105/155 (67%), Gaps = 1/155 (0%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-S 153
           R +M   PH L+EG +I++ A+ A+  +I++RGE++   + L  AV E  A+GLLG N  
Sbjct: 110 RMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNIL 169

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
             G+D ++ VH GAG YICGEETAL+ SLEG++G 
Sbjct: 170 GTGFDFELFVHTGAGRYICGEETALINSLEGRRGN 204


>gi|67043787|gb|AAY63992.1| NADH dehydrogenase flavoprotein 1-like protein [Lysiphlebus
           testaceipes]
          Length = 121

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 88/114 (77%)

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L  + S  GTAA+IVM++ TD+IKAI RL  FYKHESCGQCTPCREG  WM ++M R 
Sbjct: 1   DDLVRVQSSFGTAALIVMNKQTDVIKAIQRLISFYKHESCGQCTPCREGISWMHKIMSRF 60

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+G A+  EID+L+E++K IE  TICAL D AAWP+QGL+++FRP IEER+  +
Sbjct: 61  VEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLVRHFRPAIEERMINF 114


>gi|213400737|gb|ACJ47017.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Tribolium
           confusum]
          Length = 124

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 93/121 (76%), Gaps = 1/121 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI A  A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAG
Sbjct: 2   LLAGRAISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPA VGL+G PTT+NNVE+IA+VP IL RG  W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRMKPPFPAVVGLFGYPTTINNVETIAMVPDILNRGGEWF 121

Query: 229 S 229
           +
Sbjct: 122 A 122


>gi|146189573|emb|CAM91788.1| hypothetical protein [Platynereis dumerilii]
          Length = 137

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/120 (60%), Positives = 86/120 (71%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG   +    ++SRG W    +IL K  +WI  E+  SGL+GRGGAGF 
Sbjct: 18  LKDQDRIFTNLYGRHDRRPKGAISRGDWYKTKEILIKDNEWIQQEIVKSGLKGRGGAGFP 77

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+GA  A
Sbjct: 78  TGMKWSFMNKPRDGRPRYLVVNADEGEPGTCKDREIMRRDPHKLVEGCLVAGKAMGARAA 137


>gi|213400755|gb|ACJ47026.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Cordylochernes scorpioides]
          Length = 124

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 92/121 (76%), Gaps = 1/121 (0%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAG 168
           ++A  AI A  A+IY+RGEF  E   L+ A+ E Y  GL+G N+ K  YD+D+ +H GAG
Sbjct: 2   LLAGRAINASVAYIYIRGEFYNEYLVLKKALKEAYKGGLIGKNACKSDYDLDVFIHRGAG 61

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AYICGEETA LES+EGKKG PR+KPPFPA +GL+GCPTT+NNVE+IA+VP IL R   W+
Sbjct: 62  AYICGEETAQLESIEGKKGFPRMKPPFPAGIGLFGCPTTINNVETIAMVPDILYRKGEWF 121

Query: 229 S 229
           +
Sbjct: 122 A 122


>gi|51947515|gb|AAU14242.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus
           ovalis]
          Length = 110

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 84/110 (76%)

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+S+SGH+N PCTVE+ MSI+  ELIE+H GG+RGGWDNLL VIPGGSS P +      
Sbjct: 1   KLYSLSGHINNPCTVEDEMSISVRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCE 60

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
            A+MD+D L E GS  GTA VIV+D+STD+I AI RLS FY  ESCGQCT
Sbjct: 61  TALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLRESCGQCT 110


>gi|41406836|ref|NP_959672.1| hypothetical protein MAP0738c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395186|gb|AAS03055.1| hypothetical protein MAP_0738c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 436

 Score =  149 bits (376), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 179/381 (46%), Gaps = 20/381 (5%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH----YLVVNADESEPGTCKDRD 96
           D +++EV+ASGL GRGGA F  G+K   +       P      +V N +E EP + KDR 
Sbjct: 47  DQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAPRAGGTVVVANGEEGEPASIKDRW 106

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++R+ PH +++G  +A+  +GA   ++YV         S+++A+ E     L G      
Sbjct: 107 LLRNRPHLVLDGLRLAAAVVGAERGYVYVSDP--EAAHSVESALGELDPDTLGG------ 158

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
             V + +      Y+ GEETA + +L G   +P  KPP P   G+   PT V+NVE++A 
Sbjct: 159 --VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKPPRPFEAGVGDRPTLVSNVETLAN 216

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +P +   GAS +   G   + GT L +ISG    P   E      F EL+  H  G+   
Sbjct: 217 LPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVLYELVHGTPFTELLALH--GVSA- 273

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D +   + GG     L    ++   +D++ ++  GSGLG  A+ V+     +  A   L
Sbjct: 274 -DAVRGALMGGYFAGLLNRSVLQ-TTLDHETMRRFGSGLGCGAISVLTDDCPVAVAASVL 331

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
           + ++  E+ GQC  C  GT  M      L  G A   ++D L   S  + GR  CA  DA
Sbjct: 332 A-YFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTEDVDRLRRWSVLLRGRGACATLDA 390

Query: 397 AAWPIQGLIKNFRPLIEERID 417
           A      L+  F   +   +D
Sbjct: 391 ATNVAFSLLDQFPDDVTAHLD 411


>gi|224550185|gb|ACN54177.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Nasonia longicornis]
 gi|224550187|gb|ACN54178.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Nasonia giraulti]
 gi|224550189|gb|ACN54179.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Nasonia longicornis]
          Length = 109

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/108 (63%), Positives = 85/108 (78%), Gaps = 1/108 (0%)

Query: 115 AIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICG 173
           AI A  A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAGAYICG
Sbjct: 2   AISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICG 61

Query: 174 EETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           EETA LES+EGKKG PR+KPPFPA VGL+G PTT+NNVE+IA+VP IL
Sbjct: 62  EETAQLESIEGKKGFPRMKPPFPAGVGLFGYPTTINNVETIAMVPDIL 109


>gi|108744325|gb|ABG02411.1| HtxX [Xanthobacter flavus]
          Length = 496

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 166/354 (46%), Gaps = 32/354 (9%)

Query: 18  KSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           ++ +D  + G +  + +++        ++ ++ A    GR G GF  G KW  +  + + 
Sbjct: 120 RTFADYRAAGGYGQLRRVMADPGAAARMLAQLSAHQAVGRAGVGFPVGEKWRQV--MAAG 177

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
               ++VN DE E    KDR I+  +PH ++E  ++A+   GA   F+YVR ++      
Sbjct: 178 GTPVVIVNGDEGELAIFKDRFILETDPHGVLEAALVAARVTGADLVFLYVRDDYAPIHAI 237

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           ++ A++E  A+GL          + + +    GA+ICGEETAL+ SLEG+  +P  +PPF
Sbjct: 238 VRRALEEVAAAGL-------AEGIGLELRRSGGAFICGEETALIASLEGRAARPTERPPF 290

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN----NRGTKLFSISGHVNYP 251
           P   G  G PT ++NVE      T  R  A+W    G       +   +LFS+SG V  P
Sbjct: 291 PTTRGYLGRPTLLHNVE------TFYRLTAAWGGTPGSPASVLLDPQVRLFSVSGRVCAP 344

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDN---LLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
                       +L+E     I GG  N   L  ++ GGSS   + A   R  + D   L
Sbjct: 345 GPKPVRGLSRLADLVE-----IAGGMQNGHALGGLVIGGSSGTLVGAADCRRPLAD---L 396

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
              G  LGT   IV     +      R++ +   ESCGQC PCR GT    R++
Sbjct: 397 LAEGLRLGTGGAIVFGADDEPRAIAARMAAYLARESCGQCGPCRIGTAHAARIL 450


>gi|315443529|ref|YP_004076408.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Mycobacterium sp. Spyr1]
 gi|315261832|gb|ADT98573.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Mycobacterium sp. Spyr1]
          Length = 426

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 175/374 (46%), Gaps = 53/374 (14%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRH 100
           +++E+  +G+ GRGGA F   +K + + +  S R     LV N +E EP + KDR ++R+
Sbjct: 45  LLDEIDRAGVLGRGGAAFPLAVKLTTV-RSASLRGVDTVLVANGEEGEPASVKDRWLLRN 103

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            PH +++G  +A+  IGA  A +Y+  E  R   ++QAA+ E     L G        V 
Sbjct: 104 RPHLVLDGLRLAARIIGARHAHVYLSDE--RAEGAVQAALAETTPDLLDG--------VT 153

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + V      Y+ GEETA + ++ G   +P  KPP P   G+ G PT V NVE++A +P +
Sbjct: 154 VSVRRVEAGYVAGEETAAVRAINGGPAKPTDKPPRPFEEGVGGLPTAVCNVETLANLPYV 213

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
            R GA  Y   G + + GT L +++G    P   E    IT  E+I  H           
Sbjct: 214 QRHGADEYRRIGTDGSPGTFLATLTGGGIAPGLYELPFGITAGEVIALH----------- 262

Query: 281 LAVIPGGSSVPCLPAGQMRGAIM-----------------DYDGLKEMGSGLGTAAVIVM 323
                       +PA ++RGA+M                 D++ L+ +GSGLG  AV V+
Sbjct: 263 -----------GIPAERVRGALMGGYFAGLLDRRVLDSTLDHEALRALGSGLGCGAVSVL 311

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
                +      L+ +Y  E+  QC  C  GT  M    E L  G A   ++  L   S+
Sbjct: 312 TEECPVAVGASVLA-YYDRENADQCGSCFNGTAAMAAAAEALRDGSADADDLARLERWSQ 370

Query: 384 NIEGRTICALGDAA 397
            + GR  CA  DAA
Sbjct: 371 VLRGRGACATLDAA 384


>gi|145223072|ref|YP_001133750.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium gilvum PYR-GCK]
 gi|145215558|gb|ABP44962.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Mycobacterium gilvum PYR-GCK]
          Length = 430

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 175/374 (46%), Gaps = 53/374 (14%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRH 100
           +++E+  +G+ GRGGA F   +K + + +  S R     LV N +E EP + KDR ++R+
Sbjct: 49  LLDEIDRAGVLGRGGAAFPLAVKLTTV-RSASLRGVDTVLVANGEEGEPASVKDRWLLRN 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            PH +++G  +A+  IGA  A +Y+  E  R   ++QAA+ E     L G        V 
Sbjct: 108 RPHLVLDGLRLAARIIGARHAHVYLSDE--RAEGAVQAALAETTPDLLDG--------VT 157

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + V      Y+ GEETA + ++ G   +P  KPP P   G+ G PT V NVE++A +P +
Sbjct: 158 VSVRRVEAGYVAGEETAAVRAINGGPAKPTDKPPRPFEEGVGGLPTAVCNVETLANLPYV 217

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
            R GA  Y   G + + GT L +++G    P   E    IT  E+I  H           
Sbjct: 218 QRHGADEYRRIGTDGSPGTFLATLTGGGIAPGLYELPFGITAGEVIALH----------- 266

Query: 281 LAVIPGGSSVPCLPAGQMRGAIM-----------------DYDGLKEMGSGLGTAAVIVM 323
                       +PA ++RGA+M                 D++ L+ +GSGLG  AV V+
Sbjct: 267 -----------GIPAERVRGALMGGYFAGLLDRRVLDSTLDHEALRALGSGLGCGAVSVL 315

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
                +      L+ +Y  E+  QC  C  GT  M    E L  G A   ++  L   S+
Sbjct: 316 TEECPVAVGASVLA-YYDRENADQCGSCFNGTAAMAAAAEALRDGSADADDLARLERWSQ 374

Query: 384 NIEGRTICALGDAA 397
            + GR  CA  DAA
Sbjct: 375 VLRGRGACATLDAA 388


>gi|284110216|ref|ZP_06386512.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829782|gb|EFC34087.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 193

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 118/195 (60%), Gaps = 4/195 (2%)

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLE 183
           +  EF+  R SL+ A+++    G LG N    G D+D+ +  G G+Y+ GEETA+LES++
Sbjct: 1   MNAEFLDARASLEKALEQARTRGFLGRNVMGSGVDLDLEIFEGHGSYVAGEETAMLESMQ 60

Query: 184 GKKGQPRLKPPF-PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           G+  QP+ KPPF P   GL+G PT VNNVE+++ VP +LR GA W++  G E + GT LF
Sbjct: 61  GRPAQPKEKPPFYPTEFGLHGKPTLVNNVETLSHVPHLLRNGAEWFTEVGAEKSPGTMLF 120

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+SG VN P   E  +      LIE+  GG+  G   + A+ PGG S   +    +    
Sbjct: 121 SLSGAVNRPGVYELPLGTPLRHLIEECGGGVPHG-RAIKAMFPGGPSFAMVGPDALD-LP 178

Query: 303 MDYDGLKEMGSGLGT 317
           MD+D LK+ G+GLG+
Sbjct: 179 MDFDALKKAGTGLGS 193


>gi|254818614|ref|ZP_05223615.1| hypothetical protein MintA_01759 [Mycobacterium intracellulare ATCC
           13950]
          Length = 434

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 186/398 (46%), Gaps = 55/398 (13%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMP---KVCSDRPHYLVV-NADESEPGTCKDRD 96
           D ++ EV+ASGL GRGGA F   +K   +    ++ +D    +VV N +E EP + KDR 
Sbjct: 46  DALLGEVEASGLVGRGGAAFPLAVKLRTVRENGRLMADTGGPVVVANGEEGEPASIKDRW 105

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++R+ PH +++G  +A+  + A  A++YV         S++ A+ E      LG ++ LG
Sbjct: 106 LLRNRPHLVLDGLRLAATLVAADRAYLYVSD--AESAHSVETALGE------LGPDT-LG 156

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
             + ++       Y+ GEETA + ++ G   +P  KPP P   G+   PT V+NVE++A 
Sbjct: 157 VPITMLTV--PAGYVAGEETAAVRAINGGPAKPTDKPPRPFEAGVDDRPTLVSNVETLAN 214

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +P + R G++ +   G   + GT L +I+G    P   E    + F EL+  H       
Sbjct: 215 LPYLQRHGSAAFRAQGTPLSPGTFLATITGAGRPPVLYELPHGLPFTELLALH------- 267

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIM-----------------DYDGLKEMGSGLGTAA 319
                           +PA Q+RGA+M                 D++ ++ +GSGLG  A
Sbjct: 268 ---------------GVPADQVRGALMGGYFAGLLNRSVLETTLDHETMRRVGSGLGCGA 312

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           + V+     +  A   L+ ++  E+ GQC  C  GT  M      L  G A   +++ L 
Sbjct: 313 ISVITDDCPVAVAASVLA-YFDRENAGQCGSCFNGTAAMAAAAGALRDGAATTEDVERLR 371

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             S  + GR  CA  DAA      L+  F   +   +D
Sbjct: 372 RWSVVLRGRGACATLDAATNVAASLLDQFPDEVGAHVD 409


>gi|268323918|emb|CBH37506.1| putative Fe-only hydrogenase, C-terminus [uncultured archaeon]
          Length = 211

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 117/221 (52%), Gaps = 20/221 (9%)

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           G PT +NNVE++  VPTI+ +G  WYS  G  N  GTKLF ISGHVN P   E  M +T 
Sbjct: 2   GKPTAINNVETLCNVPTIIEKGGDWYSKIGSPNAPGTKLFCISGHVNKPGVYEIPMELTL 61

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            ELI+ + GG++G +    AV+PGG S   L    ++   +DY  + E GS LG+A+VIV
Sbjct: 62  RELIDNYGGGVKGKFK---AVLPGGVSSSLLTDLDVK---LDYKSVAEAGSMLGSASVIV 115

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK-------GIAQKREI 375
           ++  + I+        F+ HESCGQCTPCREGT     ++ R                  
Sbjct: 116 INGDSSIVDVTKNSMEFFVHESCGQCTPCREGTRTANAIIGRFANGEGREEELEILLELG 175

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           D++Y+ S+       C LG AA       IK FR    +R+
Sbjct: 176 DVMYDTSR-------CGLGQAAMNITTSAIKMFRDEFMQRV 209


>gi|254773815|ref|ZP_05215331.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 436

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 178/384 (46%), Gaps = 26/384 (6%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRD 96
           + +++EV+ASGL GRGGA F  G+K   +       P      +V N +E EP + KDR 
Sbjct: 47  EQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAPGAGGTVVVANGEEGEPASIKDRW 106

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++R+ PH +++G  +A+  +GA   ++YV         S+++A+ E     L G      
Sbjct: 107 LLRNRPHLVLDGLRLAAAVVGAERGYVYVSDP--EAAHSVESALGELDPDTLDG------ 158

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
             V + +      Y+ GEETA + +L G   +P  KPP P   G+   PT V+NVE++A 
Sbjct: 159 --VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKPPRPFEAGVGDRPTLVSNVETLAN 216

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH---CGGI 273
           +P +   GAS +   G   + GT L +ISG    P   E +    F EL+  H      +
Sbjct: 217 LPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVLYELAHGTPFTELLALHGVSANAV 276

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
           RG        + GG     L    ++   +D++ ++  GSGLG  A+ V+     +  A 
Sbjct: 277 RG-------ALMGGYFAGLLNRSVLQ-TTLDHETMRRFGSGLGCGAISVLTDDCPVAVAA 328

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
             L+ ++  E+ GQC  C  GT  M      L  G A    +D L   S  + GR  CA 
Sbjct: 329 SVLA-YFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTEGVDRLRRWSVLLRGRGACAT 387

Query: 394 GDAAAWPIQGLIKNFRPLIEERID 417
            DAA      L+  F   +   +D
Sbjct: 388 LDAATNVAASLLDQFPDDVTAHLD 411


>gi|126436279|ref|YP_001071970.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium sp. JLS]
 gi|126236079|gb|ABN99479.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Mycobacterium sp. JLS]
          Length = 433

 Score =  145 bits (367), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 178/368 (48%), Gaps = 19/368 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV-NADESEPGTCKDRDIMRHE 101
           +++EV+ SGL GRGGA F   +K   +      R   + + N +E EP + KDR ++RH 
Sbjct: 49  LLDEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRGGAVAIANGEEGEPASIKDRWLLRHR 108

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRG-EFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           PH +++G  +A+  + A  A +YV   E  R  E+    VD     G+  S         
Sbjct: 109 PHLVLDGLRLAARVVEAERAIVYVSDPESARSVETALTQVDSTVLDGVSISV-------- 160

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           ++V  G   Y+ GEETA + +++G   +P  KPP P   G+ G PT V+NVE++A +P +
Sbjct: 161 VVVDPG---YVAGEETAAVRAIDGGPAKPTDKPPRPFEEGVGGLPTLVSNVETLANLPYL 217

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
              GA  Y   G  ++ GT L +++G    P   E    +   +++  H  GI    D++
Sbjct: 218 HEHGAREYRSAGTPSSPGTFLATVTGGGGPPALYELPHGVALADVLTWH--GI--SPDSV 273

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
             V+ GG     L    +  A +D++ L+ +GSGLG  AV V+     +  A   L+ ++
Sbjct: 274 SGVLMGGYFTGLL-NRDVLDATLDHEALRRLGSGLGCGAVGVLTDECPVAVAASVLA-YF 331

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             E+ GQC  C  GT  M  V   L  G+A   ++  L   S  + GR  C   DAA   
Sbjct: 332 DRENAGQCGSCFNGTAAMAAVAVALRDGVASDDDLARLERWSVVLRGRGACGTLDAATNV 391

Query: 401 IQGLIKNF 408
              L+  F
Sbjct: 392 AASLLTAF 399


>gi|241865242|gb|ACS68699.1| NADH dehydrogenase [Sonneratia alba]
 gi|241865475|gb|ACS68770.1| NADH dehydrogenase [Sonneratia alba]
          Length = 107

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 83/107 (77%)

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
           G   LLAVIPGGSSVP LP  +    +MDYD LK + SGLGTAAVIVMD+STD++ AI R
Sbjct: 1   GLMGLLAVIPGGSSVPLLPKHKCDNVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIAR 60

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           LS FYKHESCGQCTPCREGTGW+  +ME+L  G A+  EID+L EV+
Sbjct: 61  LSYFYKHESCGQCTPCREGTGWLWMIMEKLKVGNAKLEEIDMLQEVT 107


>gi|118469883|ref|YP_889068.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171170|gb|ABK72066.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Mycobacterium smegmatis str. MC2 155]
          Length = 431

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 183/377 (48%), Gaps = 18/377 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV-NADESEPGTCKDRDIMRHE 101
           +++ V+ASGL GRGGA F   +K   +          +V+ N +E EP + KDR ++R+ 
Sbjct: 45  LLDAVEASGLLGRGGAAFPLAVKLRTVRDNGRAAGGAVVIANGEEGEPASIKDRWLLRNR 104

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
           PH +++G  +A+  +GAH A +Y      +   S++ A+ E          S  G  V++
Sbjct: 105 PHAVLDGLRLAALMVGAHRAVLYTSDA--QSARSVEHALAET-------GGSSGGVAVEL 155

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           I       Y+ GEE+A +  ++G   +P  KPP P   G+ G PT ++NVE++A +  + 
Sbjct: 156 ITV--TTGYVAGEESAAVRVVDGGPAKPTDKPPRPFEEGVGGYPTLISNVETLAHLAYLN 213

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA+ +  +G E + GT L +I+G    P   E    + F +++  H  G+    D + 
Sbjct: 214 LHGAADFREYGTEGSPGTFLATITGAGRAPALYELPHGVAFTDVLALH--GVS--PDTVT 269

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
             + GG     L   ++ GA +D++ ++ +GSGLG  A+ V+     +  A   LS ++ 
Sbjct: 270 GALMGGYFAGLL-GREIVGATLDHETIRGLGSGLGCGAISVLTDDCPVAVAAAVLS-YFD 327

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            E+ GQC  C  GT  M  V   L  G A   ++  L   S  + GR  CA  D A    
Sbjct: 328 RENAGQCGSCFNGTAAMAAVATALRDGTATDDDVARLKRWSVVLRGRGACATLDGACNVA 387

Query: 402 QGLIKNFRPLIEERIDQ 418
             L+  F  ++   +D 
Sbjct: 388 ASLLSGFDDVVRRHLDN 404


>gi|118463353|ref|YP_880187.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein
           [Mycobacterium avium 104]
 gi|118164640|gb|ABK65537.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein
           [Mycobacterium avium 104]
          Length = 436

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/381 (30%), Positives = 179/381 (46%), Gaps = 20/381 (5%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPK----VCSDRPHYLVVNADESEPGTCKDRD 96
           + +++EV+ASGL GRGGA F  G+K   +              +V N +E EP + KDR 
Sbjct: 47  EQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAAGAGGTVVVANGEEGEPASIKDRW 106

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++R+ PH +++G  +A+  +GA   ++YV         S+++A+ E     L G      
Sbjct: 107 LLRNRPHLVLDGLRLAAAVVGAERGYVYVSDP--EAAHSVESALGELDPDTLGG------ 158

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
             V + +      Y+ GEETA + +L G   +P  KPP P   G+   PT V+NVE++A 
Sbjct: 159 --VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKPPRPFEAGVGDRPTLVSNVETLAN 216

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           VP +   GAS +   G   + GT L +ISG    P   E +    F EL+  H  G+   
Sbjct: 217 VPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVLYELAHGTPFTELLALH--GVSA- 273

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D +   + GG     L    ++   +D++ ++  GSGLG  A+ V+     +  A   L
Sbjct: 274 -DAVRGALMGGYFAGLLNRSVLQ-TTLDHETMRRFGSGLGCGAISVLTDDCPVAVAASVL 331

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
           + ++  E+ GQC  C  GT  M      L  G A   ++D L   S  + GR  CA  DA
Sbjct: 332 A-YFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTEDVDRLRRWSVLLRGRGACATLDA 390

Query: 397 AAWPIQGLIKNFRPLIEERID 417
           A      L+  F   +   +D
Sbjct: 391 ATNMAASLLDQFPDDVTAHLD 411


>gi|218661814|ref|ZP_03517744.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli
           IE4771]
          Length = 187

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 109/188 (57%), Gaps = 3/188 (1%)

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G KL+ +SG V+ P   E  M I   EL+E H GG+  G   + AVIPGG S P +P   
Sbjct: 3   GPKLYCLSGQVHKPGLYELPMGIPLRELVENHAGGVLPG-RRIKAVIPGGVSAPVIPEHG 61

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MD+D L   GS LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W
Sbjct: 62  LE-VRMDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGLNW 120

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            ++V+ R+  G     +++ L  + K I G T CALGD AA  ++  + +FR      I+
Sbjct: 121 TVKVLRRIEAGEGAAGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFVAHIE 180

Query: 418 QYHRCNFQ 425
           + HRC F 
Sbjct: 181 E-HRCPFH 187


>gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 1198

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 183/382 (47%), Gaps = 39/382 (10%)

Query: 34   KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNADESEPGTC 92
            K +  G + +I E+  S L GRGGAGF TG KW    K   +D+  Y+V NADE  P T 
Sbjct: 834  KAVSMGPEKVIEEIFKSNLVGRGGAGFRTGKKWESAYKTPATDK--YVVCNADEGLPSTY 891

Query: 93   KDRDIMRHE--PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
            KD  ++ HE     +  G  I +  IGA   F+Y+R E+     +L+ A+ +   +    
Sbjct: 892  KDWCLLNHEVKRKEVFTGMGICAKTIGAKRCFLYLRYEYRNLVPALEQAIKDVQRT--CP 949

Query: 151  SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGCPTT 207
              + L Y++ +    G G Y+ GEE A  ES+EG+   PR   P   FP   GL+  PT 
Sbjct: 950  ELADLKYEIRL----GGGPYVAGEENAQFESIEGRAPLPRKDRPGNVFPTMEGLFHKPTV 1005

Query: 208  VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFDELI 266
            +NNVE+   VP I+++G+     FG    +  KL S++G V  P  +E  + + + + L+
Sbjct: 1006 INNVETFFAVPHIIQQGS---QDFGE--GKMPKLLSVTGDVEQPILIETHLNNYSLNHLL 1060

Query: 267  EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA--AVIVMD 324
            ++          +++A   GG + P +   +       +D L   G G   A  +V++ +
Sbjct: 1061 KEI------DAKDIVAAEIGGCTEPIIFGSK-------FDTLFGFGKGTLNAVGSVVLFN 1107

Query: 325  RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
             S D+ K       F   ESC QC PCR+G+    R  + L         +  L   S++
Sbjct: 1108 SSCDLGKIYENKLKFMSEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRALSVASES 1167

Query: 385  IEGRTICALGDAAAWPIQGLIK 406
                +ICA G A    ++GL+K
Sbjct: 1168 AARSSICAHGKA----LEGLVK 1185


>gi|330944403|gb|EGH46418.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 254

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/237 (35%), Positives = 123/237 (51%), Gaps = 5/237 (2%)

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTK 240
           E ++  PR KPPFPA VG++G PT VNNVE++  VP I+  G  WY    RE   + GTK
Sbjct: 1   EARRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTK 60

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L   SG V  P   E    +   EL E + GG+R G+  L    PGG+    L    +  
Sbjct: 61  LMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGF-KLKCWQPGGAGTGFLLPEHLD- 118

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A M   G+ ++G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++
Sbjct: 119 AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVK 178

Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++  +  G  Q  +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 179 MLRAIENGQGQPGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 235


>gi|240170417|ref|ZP_04749076.1| hypothetical protein MkanA1_13985 [Mycobacterium kansasii ATCC
           12478]
          Length = 431

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 182/369 (49%), Gaps = 17/369 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV-NADESEPGTCKDRDIMR 99
           D +++E++++GL GRGGA F  G+K   + +        +VV N +E EP + KDR ++R
Sbjct: 46  DTLLHEIESAGLLGRGGAAFPLGVKLRAVRRNGRAAGGAVVVANGEEGEPTSIKDRWLLR 105

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
           + PH +++G  +A+  +GA   ++YV            AA     A   LGS++  G  V
Sbjct: 106 NRPHLVLDGLRLAATIVGAKRGYVYV--------SDPDAARGAEAALAELGSDTLGG--V 155

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I V      Y+ GEETA + ++ G   +P  KPP P  VG+ G PT V+NVE++A +P 
Sbjct: 156 GISVWTVPPGYVAGEETAAVRAINGGPAKPTDKPPRPYEVGVRGRPTLVSNVETLANLPY 215

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           + +RG+S +   G  ++ GT L +++G    P   E    + F EL+  H  G+    + 
Sbjct: 216 LQQRGSSAFRTQGTPSSPGTFLATVAGANRPPVLYELPHGLRFTELLALH--GVSS--EQ 271

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           +   + GG     L    +    +D++ ++  GSGLG  A+ V+     +  A   L+ +
Sbjct: 272 VRGTLMGGYFAGLLNRSVL-DTTLDHETMRRAGSGLGCGAISVITDDCPVAVAASVLA-Y 329

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           +  E+ GQC  C  GT  M  V   L    A   ++D L   S  + GR  CA  DAA  
Sbjct: 330 FDRENAGQCGSCFNGTAAMAAVASALRDSAATPEDVDRLRRWSVVLRGRGACATLDAATN 389

Query: 400 PIQGLIKNF 408
               L+  F
Sbjct: 390 VAGTLLGQF 398


>gi|108800655|ref|YP_640852.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium sp. MCS]
 gi|119869794|ref|YP_939746.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium sp. KMS]
 gi|108771074|gb|ABG09796.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Mycobacterium sp. MCS]
 gi|119695883|gb|ABL92956.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Mycobacterium sp. KMS]
          Length = 433

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/368 (30%), Positives = 177/368 (48%), Gaps = 19/368 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV-NADESEPGTCKDRDIMRHE 101
           ++ EV+ SGL GRGGA F   +K   +      R   + + N +E EP + KDR ++RH 
Sbjct: 49  LLEEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRGGAVAIANGEEGEPASIKDRWLLRHR 108

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRG-EFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           PH +++G  +A+  + A  A +YV   E  R  E+    VD     G+  S         
Sbjct: 109 PHLVLDGLRLAARVVEAERAIVYVSDPESARSVETALTQVDSPVLDGVSISV-------- 160

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           ++V  G   Y+ GEETA + +++G   +P  KPP P   G+ G PT V+NVE++A +P +
Sbjct: 161 VVVDPG---YVAGEETAAVRAIDGGPAKPTDKPPRPFEEGVGGLPTLVSNVETLANLPYL 217

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
              GA  Y   G  ++ GT L +++G    P   E    +   +++  H  GI    D++
Sbjct: 218 HEHGAREYRSAGTPSSPGTFLATVTGGGGPPALYELPHGVALADVLTWH--GI--SPDSV 273

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
             V+ GG     L    +  A +D++ L+ +GSGLG  AV V+     +  A   L+ ++
Sbjct: 274 SGVLMGGYFTGLL-NRDVLDATLDHEALRRLGSGLGCGAVGVLTDECPVAVAASVLA-YF 331

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             E+ GQC  C  GT  M  V   L  G+A   ++  L   S  + GR  C   DAA   
Sbjct: 332 DRENAGQCGSCFNGTAAMAAVAVALRDGVASDDDLARLERWSVVLRGRGACGTLDAATNV 391

Query: 401 IQGLIKNF 408
              L+  F
Sbjct: 392 AASLLTAF 399


>gi|183984697|ref|YP_001852988.1| NADH dehydrogenase I (chain F) (NADH-ubiquinone oxidoreductase
           chain F), NuoF_1 [Mycobacterium marinum M]
 gi|183178023|gb|ACC43133.1| NADH dehydrogenase I (chain F) (NADH-ubiquinone oxidoreductase
           chain F), NuoF_1 [Mycobacterium marinum M]
          Length = 445

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/359 (31%), Positives = 169/359 (47%), Gaps = 28/359 (7%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP----HYLVVNADESEPGTCKDRD 96
           D ++ E+ ASGL GRGGA F   +K   +   C          ++ N +E EP + KDR 
Sbjct: 52  DKLLREIDASGLLGRGGAAFPLAVKMRAVRDNCRRAGPAGGAVVIANGEEGEPASFKDRW 111

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRG-EFIRERESLQAAVDECYASGLLGSNSKL 155
           ++R+ PH +++G  +A+  + A  A++YV   E  R  E     +D     G        
Sbjct: 112 LLRNRPHLVLDGLRLAAALVAATRAYVYVSDPESARSVERALTQLDPDAFGG-------- 163

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              V + V      Y+ GEETA + ++ G   +P  KPP P   G+ G PT V+NVE++A
Sbjct: 164 ---VAVSVWAVPPGYVAGEETAAVRAINGGPVKPSDKPPRPFEYGVSGRPTLVSNVETLA 220

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG--- 272
            +P + R GAS Y   G  ++ GT L +I+G    P   E    + F EL+  H      
Sbjct: 221 NLPYLHRHGASEYRALGTPSSPGTFLATITGAGRAPVLYELPYGLPFSELLALHAVAPTK 280

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           IRG       V+ GG     L  G + G  +D++ ++ +GSGLG  A+ V+     +  A
Sbjct: 281 IRG-------VLMGGYFAGLLNRGVL-GTTLDHETMRRLGSGLGCGAISVITDDCPVAVA 332

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
              LS ++  E+ GQC  C  GT  M  V   L    A   +ID L   S  + GR  C
Sbjct: 333 ASVLS-YFDRENAGQCGSCFNGTAAMAAVGGALRDFAATSEDIDRLRRWSVVLRGRGAC 390


>gi|296169557|ref|ZP_06851177.1| possible NADH dehydrogenase (quinone) [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895823|gb|EFG75518.1| possible NADH dehydrogenase (quinone) [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 435

 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 178/373 (47%), Gaps = 25/373 (6%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH-----YLVVNADESEPGTCKDR 95
           D ++ EV+A GL GRGGA F   +K     +   D         +V N +E EP + KDR
Sbjct: 49  DALLGEVEAGGLVGRGGAAFPLAVKL----RAVRDNGRGAGGAVVVANGEEGEPASLKDR 104

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++R+ PH +++G  +A+  +GA  A++YV         S++ A+ E    G+LG     
Sbjct: 105 WLLRNRPHLILDGLRLAAAMVGADRAYVYVSDP--ESAHSVETALGE-LEPGILGR---- 157

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              V + +      Y+ GEETA + ++ G   +P  KPP P   G+   PT V+NVE++A
Sbjct: 158 ---VTVAMSAVQPGYVAGEETAAVRAINGGPAKPTDKPPRPFEEGVDELPTLVSNVETLA 214

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +P +  RG++ +   G   + GT L +I+G    P   E    + F EL+  H  G+  
Sbjct: 215 NLPFLQDRGSAAFRAQGTSLSPGTFLATITGAGRPPVLYELPHGLPFTELLALH--GV-- 270

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             + +   + GG     L    +  A +D++ ++ +GSGLG  A+ V+     +  A   
Sbjct: 271 SPEAVRGALLGGYFAGLLDRTVLE-ATLDHETMRRLGSGLGCGAISVITDDCPVAVAASV 329

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           L+ ++  E+ GQC  C  GT  M      L  G A   +++ L   S  + GR  CA  D
Sbjct: 330 LA-YFDRENAGQCGSCFNGTAAMAAAAGALRDGAATAEDVERLRRWSVLLRGRGACATLD 388

Query: 396 AAAWPIQGLIKNF 408
           AA      L+  F
Sbjct: 389 AATNVAASLLGRF 401


>gi|51947509|gb|AAU14239.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 641

 Score =  143 bits (360), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 182/382 (47%), Gaps = 39/382 (10%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNADESEPGTC 92
           K +  G + +I E+  S L GRGGAGF TG KW    K   +D+  Y+V NADE  P T 
Sbjct: 277 KAVSMGPEKVIEEIFKSNLVGRGGAGFRTGKKWESAYKTPATDK--YVVCNADEGLPSTY 334

Query: 93  KDRDIMRHE--PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           KD  ++ HE     +  G  I +  IGA   F+Y+R E+     +L+ A+ +   +    
Sbjct: 335 KDWCLLNHEVKRKEVFTGMGICAKTIGAKRCFLYLRYEYRNLVPALEQAIMDVQRT--CP 392

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGCPTT 207
             + L Y++ +    G G Y+ GEE A  ES+EG+   PR   P   FP   GL+  PT 
Sbjct: 393 ELADLKYEIRL----GGGPYVAGEENAQFESIEGRAPLPRKDRPGNVFPTMEGLFHKPTV 448

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFDELI 266
           +NNVE+   VP I+++G+     FG    +  KL S++G V+ P   E  + + + + L+
Sbjct: 449 INNVETFFAVPHIIQQGS---QSFGE--GKMPKLLSVTGDVDAPILFETHLNNYSLNHLL 503

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA--AVIVMD 324
           ++          +++A   GG + P +   +       +D L   G G   A  +V++ +
Sbjct: 504 KE------IDAKDIVAAEIGGCTEPIIFGSK-------FDTLFGFGKGTLNAVGSVVLFN 550

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            S D+ K       F   ESC QC PCR+G+    R  + L         +  L   S++
Sbjct: 551 SSCDLGKIYENKLKFMSEESCKQCVPCRDGSYIFHRAFKELRDTGKTSYNMRALSVASES 610

Query: 385 IEGRTICALGDAAAWPIQGLIK 406
               +ICA G A    ++GL K
Sbjct: 611 AARSSICAHGKA----LEGLFK 628


>gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis]
          Length = 1206

 Score =  142 bits (358), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 113/372 (30%), Positives = 180/372 (48%), Gaps = 35/372 (9%)

Query: 34   KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV-CSDRPHYLVVNADESEPGTC 92
            K +  G + +I EV  S L GRGGAGF TG KW    K   SD+  Y+V NADE  P T 
Sbjct: 834  KAVSMGPEKVIEEVFKSNLVGRGGAGFRTGKKWESAYKTPASDK--YVVCNADEGLPSTY 891

Query: 93   KDRDIMRHEP--HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
            KD  ++ +E     +  G  I +  IGA   F+Y+R E+     +L+ ++ +  ++    
Sbjct: 892  KDWCLLNNEAKRKEVFTGMGICAKTIGAKRCFMYLRYEYRNLVPALEQSIKDVQST--CP 949

Query: 151  SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGCPTT 207
              + L Y++ +    G G Y+ GEE A  ES+EG+   PR   P   FP   GL+  PT 
Sbjct: 950  ELADLKYEIRL----GGGPYVAGEENAQFESIEGRAPLPRKDRPGNIFPTMEGLFHKPTV 1005

Query: 208  VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFDELI 266
            +NNVE+   +P I+++G+     FG    +  KL S++G V+ P  +E ++ + + + L+
Sbjct: 1006 INNVETFFAIPHIIQQGS---QSFGE--GKMPKLLSVTGDVDEPILIETNLNNYSLNHLL 1060

Query: 267  EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA--AVIVMD 324
            ++          +++A   GG + P +   +       +D L   G G   A  +V++ +
Sbjct: 1061 QEISA------KDIVAAEIGGCTEPIIFGSK-------FDTLFGFGRGTLNAVGSVVLFN 1107

Query: 325  RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
             S D+ K       F   ESC QC PCR+G+    R  + L         +  L   S++
Sbjct: 1108 SSCDLGKIYENKLKFMAEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRALAVASES 1167

Query: 385  IEGRTICALGDA 396
                +ICA G A
Sbjct: 1168 AARSSICAHGKA 1179


>gi|229489886|ref|ZP_04383742.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Rhodococcus erythropolis SK121]
 gi|229323236|gb|EEN89001.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Rhodococcus erythropolis SK121]
          Length = 403

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/375 (30%), Positives = 175/375 (46%), Gaps = 22/375 (5%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           +  G D +I+ +  SGL GRGGAGFS G+K   M  +   RP  ++ N  E EP + KD 
Sbjct: 27  VPAGDDSVISAISRSGLAGRGGAGFSAGVK---MAAITGRRP-VVIANGSEGEPLSSKDA 82

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G  IA+ A+ A  AF+ V        E L+ A+ E   SG        
Sbjct: 83  VLLSDSPHLVLDGLSIAAAAVRATDAFLVVPASHT---ERLRNAITERRHSG-------- 131

Query: 156 GYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
            +D  D+ V   AG ++ GE+TAL+ ++EGK   PR      +  G+ G PT V+NVE++
Sbjct: 132 -WDRTDVRVVASAGRFVSGEKTALIAAVEGKPPIPRSSLASSSKSGVKGRPTLVHNVETL 190

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI- 273
           A V TI R G  W+   G  +  GT L ++SG VN P  VE    +     +E   G I 
Sbjct: 191 AHVATIARFGVDWFRSSGTTSEPGTMLVTLSGAVNNPGVVE----VPIGSRLEWVVGDIG 246

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
           R   DN  AV+ GG     +    + G  +  + L  +G+  G   V  +   T  ++A 
Sbjct: 247 RADMDNTRAVLVGGYHGTWINRADLAGRRLSRESLAAIGARPGAGVVHALAVDTCGLRAT 306

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
             +  +   ES GQC PC  G   +  V   L      ++ I  +   +  ++GR  C  
Sbjct: 307 ADIVDYLARESAGQCGPCLNGLPRLASVFGDLAYHRPGEQTIHEIRRYAGLVDGRGACHH 366

Query: 394 GDAAAWPIQGLIKNF 408
            D     ++  +  F
Sbjct: 367 PDGTVRLVRSALTAF 381


>gi|51947503|gb|AAU14236.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 637

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 175/377 (46%), Gaps = 37/377 (9%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D + K ++ G   +I EV  + L GRGGAGF TG KW    K    +  Y+V NADE  P
Sbjct: 270 DAIKKAVQMGSMKVIKEVTEAKLLGRGGAGFMTGRKWESAYKA-DVKEKYVVCNADEGLP 328

Query: 90  GTCKDRDIMRHEP--HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV----DEC 143
            T KD  ++ +E     ++ G  I +  IGA   ++Y+R E+     +++A +     EC
Sbjct: 329 STFKDWYLLNNENKRKEVLAGMGICANTIGAKKCYLYLRYEYRNLVPNIEADIKKLQSEC 388

Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVG 200
               +L    +L          G G Y+ GEE A  ES++G    PR   P   FP   G
Sbjct: 389 PELAMLNYEVRL----------GGGPYVAGEENAQFESIQGSAPIPRKDRPSSVFPTIEG 438

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS- 259
           L+  PT +NNVE+ A VP I+++G++ +     + N   KL S+SG V  P  +E  ++ 
Sbjct: 439 LFFKPTVINNVETFACVPHIVQQGSAAF-----KTNGLPKLLSVSGDVERPLIIECLLNG 493

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
            T ++LI+           ++ A   GG + P +   +     M +   K + +  G+  
Sbjct: 494 YTLNDLIKD------AKARDVAAAEIGGCTEPLVFRDKFS---MPFGFGKNVLNAAGS-- 542

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V++ D + D  +       F   ESC QC PCR+G   + +  +++      K     L 
Sbjct: 543 VVLFDTACDFGEVYSNKLHFMADESCKQCVPCRDGAQLLHKAFDQMRTTGKTKYNERSLK 602

Query: 380 EVSKNIEGRTICALGDA 396
             ++  +   ICA G A
Sbjct: 603 TAAEAAKLSAICAHGKA 619


>gi|51947507|gb|AAU14238.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 637

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 181/395 (45%), Gaps = 40/395 (10%)

Query: 15  LQGKSLSDSMSRGHW---DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
           L+ K    S+   H    D + K ++ G   +I EV  + L GRGGAGF TG KW    K
Sbjct: 252 LKAKGKEYSLIENHISVKDAIKKAVQMGPMKVIKEVTEAKLLGRGGAGFMTGRKWESAYK 311

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEP--HTLIEGCVIASFAIGAHCAFIYVRGEF 129
               +  Y+V NADE  P T KD  ++ +E     ++ G  I +  IGA   ++Y+R E+
Sbjct: 312 A-DVKEKYVVCNADEGLPSTFKDWYLLNNENKRKEVLAGMGICANTIGAKKCYLYLRYEY 370

Query: 130 IRERESLQAAV----DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
                +++A +     EC    +L    +L          G G Y+ GEE A  ES++G 
Sbjct: 371 RNLVPNIEADIKKLQSECPELAMLNYEVRL----------GGGPYVAGEENAQFESIQGS 420

Query: 186 KGQPRLKPP---FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
              PR   P   FP   GL+  PT +NNVE+ A VP I+++G++ +     + N   KL 
Sbjct: 421 APIPRKDRPSSVFPTIEGLFFKPTVINNVETFACVPHIVQQGSAAF-----KTNGLPKLL 475

Query: 243 SISGHVNYPCTVEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           S+SG V  P  +E  ++  T ++LI+           ++ A   GG + P +   +    
Sbjct: 476 SVSGDVERPLIIECLLNGYTLNDLIKD------AKARDVAAAEIGGCTEPLVFHDKFS-- 527

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            M +   K + +  G+  V++ D + D  +       F   ESC QC PCR+G   + + 
Sbjct: 528 -MPFGFGKNVLNAAGS--VVLFDTACDFGEVYSNKLHFMADESCKQCVPCRDGAQLLHKA 584

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
            +++      K     L   ++  +   ICA G A
Sbjct: 585 FDQMRTTGKTKYNERSLKTAAEAAKLSAICAHGKA 619


>gi|263364|gb|AAB24883.1| mitochondrial NADH:ubiquinone oxidoreductase 51 kda subunit [Homo
           sapiens]
          Length = 130

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 71/96 (73%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI 130


>gi|222873938|gb|EEF11069.1| predicted protein [Populus trichocarpa]
          Length = 251

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 127/238 (53%), Gaps = 9/238 (3%)

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           +LES+EG++G  R KPP PA  GL+G PT +NNV ++A VP IL RGA++Y GFG   +R
Sbjct: 1   MLESIEGRRGIVRSKPPLPAIEGLWGRPTVINNVITLATVPLILARGAAFYQGFGMGRSR 60

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT  F ++G++     VE++  ++  EL+E   GG   G       + G       PA  
Sbjct: 61  GTLPFQLAGNIARGGLVEKAFGLSLRELVEDFGGGTATGRTVKAVQVGGPLGSYVAPADW 120

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
              A +DY+     G+ +G   ++V D + D+ +       F   ESCG+CTPCR G+  
Sbjct: 121 --DAPLDYEAYAAKGNVVGHGGIVVHDDTADMAQLARYAMEFCAIESCGKCTPCRIGSTR 178

Query: 358 MMRVMERLVKG-------IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            + V++R+V+             ++ LL  +   ++  ++CA+G    +P++  + ++
Sbjct: 179 GVEVIDRIVRAGSDPAAHAGHAGQVALLESLCDTMQHGSMCAMGGMTPYPVRSALNHY 236


>gi|327243025|gb|AEA41131.1| putative bifurcating [FeFe] hydrogenase subunit 2 [Clostridium
           butyricum]
          Length = 199

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 101/153 (66%), Gaps = 2/153 (1%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+E+  S LRGRGG GF TG+KWS + K  ++   Y+V N DE +PG   DR +M  EP
Sbjct: 45  IIDEISESSLRGRGGGGFPTGIKWSQVYK-QNENDKYIVCNGDEGDPGAFMDRSMMEGEP 103

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDI 161
           H +IEG +IA  A GAH  +IYVR E+    E L+ A+++    GLLG+N    G+D +I
Sbjct: 104 HRIIEGMIIAGIATGAHKGYIYVRAEYPLAVERLEKAIEQAENKGLLGNNILNSGFDFNI 163

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +  GAGA++CGE +AL  S+EG +G PR+KPP
Sbjct: 164 RISKGAGAFVCGEGSALTTSIEGSRGMPRVKPP 196


>gi|218671476|ref|ZP_03521146.1| formate dehydrogenase protein, beta subunit [Rhizobium etli GR56]
          Length = 283

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 96/168 (57%), Gaps = 2/168 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SLSD  + G    + + +      I+ EV  SGLRGRGGAGF TG+KW  +     DR  
Sbjct: 117 SLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAGFPTGIKWKTVLDAAGDR-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA   F+Y R E+     ++  
Sbjct: 176 YIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATKGFVYTRSEYPHAIAAMSE 235

Query: 139 AVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           AV     +G+LG S    G   DI V  GAGAY+CGEETALL SLEGK
Sbjct: 236 AVAIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETALLNSLEGK 283


>gi|160334187|gb|ABX24511.1| respiratory-chain NADH dehydrogenase [Streptomyces cacaoi subsp.
           asoensis]
          Length = 497

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 161/352 (45%), Gaps = 15/352 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R  +++ V+A+GL GRGGAGF T  K   +      RP  +VVNA ESEP + KD+ ++ 
Sbjct: 110 RGSLVDAVEAAGLTGRGGAGFPTARKMRSV-AAGRGRP-VVVVNAMESEPASRKDQFLIA 167

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
             PH +++G V+A+  +GA    + +      ++  L  AV+E  ++ L          V
Sbjct: 168 VAPHLVLDGAVLAAVQVGADTVHVCLPRTRTAQQRRLGNAVEERRSARL--------DPV 219

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I +H     Y+  E T+L+  L+G   +PR  PP     G+   PT V+N E++A +  
Sbjct: 220 RIRLHALPHGYVSSESTSLVRWLDGGPARPRGNPPHSHERGVARRPTLVHNAETLAHLAL 279

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I R G  W+   G  +  GT + ++SG V  P   E  + I  D  + +         + 
Sbjct: 280 IARHGPDWFRRAGTPDEPGTMMITVSGAVTAPGVGEVPLGIPLDTALGRAGDTT----EP 335

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           + A++ GG +   LPA  +   +   D L  +G+  G   +I + RS   +    R+  F
Sbjct: 336 VRALLVGGFAGTWLPAEDLHTPLTRRD-LAPLGAAPGAGVLIALPRSACGLLETARILAF 394

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
              +S  QC PCR G   +      L  G +    +  L   +  +  R  C
Sbjct: 395 LGAQSARQCGPCRYGLPAVAEDFAALAAGQSHPELLSRLRRRTGLLPDRGAC 446


>gi|296082757|emb|CBI21762.3| unnamed protein product [Vitis vinifera]
          Length = 350

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 68/90 (75%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 177 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 236

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +G+KWSFMPKV   RP YLVVNADESEPGT
Sbjct: 237 SGLKWSFMPKVSDGRPSYLVVNADESEPGT 266


>gi|325523856|gb|EGD02083.1| NADH dehydrogenase (quinone) [Burkholderia sp. TJI49]
          Length = 292

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/147 (48%), Positives = 94/147 (63%), Gaps = 4/147 (2%)

Query: 50  SGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           SGLRGRGGA F  G+KW  + +    +  Y+V NADE + GT  DR IM  +P+ LIEG 
Sbjct: 148 SGLRGRGGAAFPAGIKWRTV-RQARAKQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGM 206

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGA 167
           +IA  A GA    IYVR E+     +L+AA++    +G LG +  LG  +  ++ V  GA
Sbjct: 207 IIAGIATGATIGHIYVRSEYPDAIATLEAAIERAREAGWLGEHV-LGSAHAFELHVAKGA 265

Query: 168 GAYICGEETALLESLEGKKGQPRLKPP 194
           G+Y+CGEETALLESLEGK+G  R KPP
Sbjct: 266 GSYVCGEETALLESLEGKRGVVRAKPP 292


>gi|221215864|ref|ZP_03588815.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           multivorans CGD1]
 gi|221164264|gb|EED96759.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           multivorans CGD1]
          Length = 281

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 103/181 (56%), Gaps = 2/181 (1%)

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AY+CGEETALLESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y
Sbjct: 103 AYVCGEETALLESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFY 162

Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288
             +G   +RGT  F ++G++ Y   VE +  +T  EL+    GG   G     A + GG 
Sbjct: 163 RDYGMGRSRGTLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPARAAQV-GGP 221

Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348
               LP  Q     +DY+    +G+ +G   +++ D ++++ +       F   ESCG+C
Sbjct: 222 LGTYLPEHQW-DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKC 280

Query: 349 T 349
           T
Sbjct: 281 T 281


>gi|32394530|gb|AAM93963.1| NADH dehydrogenase [Griffithsia japonica]
          Length = 170

 Score =  126 bits (316), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 80/112 (71%), Gaps = 2/112 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA-GF 60
           L+D+DRIFTNLY      L  +M RG W     +++ GR WI++E+KA     R GA GF
Sbjct: 57  LSDKDRIFTNLYRDGDWRLKGAMKRGDWHMTKDLVQMGRSWILSEIKAVRPARRAGAPGF 116

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111
            +G+K+SFMP    D RP+YLVVNADESEPGTCKDR+I+R +PH L+EGC++
Sbjct: 117 PSGLKYSFMPDGSPDGRPNYLVVNADESEPGTCKDREILRSDPHKLVEGCLL 168


>gi|322369579|ref|ZP_08044143.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haladaptatus paucihalophilus DX253]
 gi|320550749|gb|EFW92399.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haladaptatus paucihalophilus DX253]
          Length = 517

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 174/383 (45%), Gaps = 45/383 (11%)

Query: 41  DWIINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           + +I+ V+  GL  RGRG A     +   +     +D    +VVNA E++     DR ++
Sbjct: 148 ETVISRVETVGLLGRGRGDARMDEPVAEEWRTARETDGDPVVVVNAGETDDRNATDRTLL 207

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             +P  +++G    + AIGA    +Y     +  RE ++ A+          +++     
Sbjct: 208 EADPVAVLDGATAVASAIGAEDIVVYCPESALGTRERVRKAMTAF-------NDTDAAEG 260

Query: 159 VDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           V I        YI  E T  LE+LEG  + + RL+PP P   GLYG PT V+   + A V
Sbjct: 261 VTIRTFAAPDMYIAAEPTMALEALEGNDRLEARLRPPSPGEHGLYGRPTIVHTPRTFAQV 320

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-------ESM--SITFDELIEK 268
             ILR   ++        + GT+L +++G V  P T+E       E++  +++ D   + 
Sbjct: 321 RRILRDPDAFDPDD---ADPGTRLLTVTGDVTAPATLELPTGGSLETVLEAVSVDSEFKM 377

Query: 269 HC-GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
            C GG  GG    L         P  PA  + GA +  DG+ E+            D+S 
Sbjct: 378 ACVGGQFGGVTRSL------DHTPSAPA--LTGARLGTDGVVEL-----------FDQSR 418

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +      + F + E+CG+C PCREG+  +  ++  +  G   + + D+L E+++ +  
Sbjct: 419 CAVVTAGTRARFAEEENCGRCVPCREGSKQLTNLLRDIYSG---EFKDDMLRELARTMRE 475

Query: 388 RTICALGDAAAWPIQGLIKNFRP 410
            +IC  G +A+ P+   +  F P
Sbjct: 476 TSICYFGRSASRPVTTAMDEFEP 498


>gi|289810293|ref|ZP_06540922.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 157

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 78/110 (70%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 48  DEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 107

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
            PH L+EG +I++FA+ A+  +I++RGE+I     L+ A+ E   +G LG
Sbjct: 108 LPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGCLG 157


>gi|324549306|gb|ADY49747.1| NADH dehydrogenase [ubiquinone] flavoprotein 1 [Ascaris suum]
          Length = 112

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 68/85 (80%)

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L E  SGLGTAAVIVM++  DI+K I RLS+FYKHESCGQCTPCREG  W+ +VM
Sbjct: 1   MDFDSLIEAQSGLGTAAVIVMNKQADIVKCIARLSLFYKHESCGQCTPCREGCNWLNKVM 60

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEG 387
            R V G A+  EID+L+E+S+++EG
Sbjct: 61  WRFVHGRAKPDEIDMLWEISRHMEG 85


>gi|225164245|ref|ZP_03726518.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
 gi|224801150|gb|EEG19473.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
          Length = 128

 Score =  117 bits (294), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 72/106 (67%)

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS  G+  VIVMD S ++++A+  ++ FY HESCGQCTPCREG+ WM ++ 
Sbjct: 1   MDFDTLAACGSMGGSGGVIVMDDSVNMVEALANINAFYSHESCGQCTPCREGSLWMKKIT 60

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            R+V G A+  +  LL  V+  I GRTICA+G+A +WP Q  ++ F
Sbjct: 61  ARMVHGTARAEDAALLKGVADQIPGRTICAMGEACSWPTQSFLQKF 106


>gi|291334209|gb|ADD93876.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
          Length = 126

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/115 (51%), Positives = 79/115 (68%), Gaps = 2/115 (1%)

Query: 110 VIASFAIGAHCAFIYVRGEFIRERE-SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
           +I+S+AIGA   + Y+RGEFI ++      AV E Y    +G N  +    +DI+   GA
Sbjct: 2   LISSYAIGASVGYNYLRGEFIGDQWIVFNKAVKEAYKYNFIGKNILRSNLCIDIVPLIGA 61

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           GAYI GEETA+LES+EGK+G PR+KPPFPA  GLYG PT +NN E++A VP I++
Sbjct: 62  GAYIVGEETAMLESIEGKRGMPRIKPPFPAVQGLYGKPTIINNTETLATVPYIIK 116


>gi|213618598|ref|ZP_03372424.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 220

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 99/202 (49%), Gaps = 3/202 (1%)

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           P IL  G  WY    +  + GTKL   SG V  P   E        E++E + GG+R G 
Sbjct: 1   PAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL 60

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L 
Sbjct: 61  -KFKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLE 118

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    
Sbjct: 119 EFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPG 178

Query: 397 AAWPIQGLIKNFRPLIEERIDQ 418
           A  P+Q  IK FR   E  I Q
Sbjct: 179 AVEPLQSAIKYFREEFEAGIKQ 200


>gi|294629306|ref|ZP_06707866.1| oxidoreductase [Streptomyces sp. e14]
 gi|292832639|gb|EFF90988.1| oxidoreductase [Streptomyces sp. e14]
          Length = 536

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 164/372 (44%), Gaps = 16/372 (4%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRD 96
           G + +    +A  LRGRGGAGF    K   +      R     +VVN  E EP   KD  
Sbjct: 45  GGEQLAQLAEAINLRGRGGAGFPFHKKLRSVADSAIKRGVRPVVVVNGSEDEPACRKDTV 104

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++   PH +++G ++ + A+GA    + V       RES Q +++   A   L +  +  
Sbjct: 105 LINRAPHLILDGALLCAEALGARTLVVGV------TRESTQRSMEAALAERGLSNGRRSA 158

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A 
Sbjct: 159 LRAR--VQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASQTGVGGAPTLLSNAETFAQ 216

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++     + G 
Sbjct: 217 LAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGA 271

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 V+ GG     + A  +  AI+  + L  +G  LG  A++ + ++T  +    ++
Sbjct: 272 PPVPQGVLTGGYHGKWIDAATVDEAIVSRNSLDAVGGSLGAGAILPISQNTCPLGESLQV 331

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
           + +   ES GQC PC  G     R ME ++ G      ++ L +V++N++ R  C+  D 
Sbjct: 332 AKWLAEESAGQCGPCYLGLPAAARGMEDILNG-GGPAALEALKQVARNVKRRGACSHPDG 390

Query: 397 AAWPIQGLIKNF 408
           +A  ++  +K F
Sbjct: 391 SAMFLESTVKAF 402


>gi|21221032|ref|NP_626811.1| oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|289771690|ref|ZP_06531068.1| oxidoreductase [Streptomyces lividans TK24]
 gi|6714679|emb|CAB66251.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|289701889|gb|EFD69318.1| oxidoreductase [Streptomyces lividans TK24]
          Length = 524

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 161/359 (44%), Gaps = 16/359 (4%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           L+GRGGAGF    K   + +    R     +VVN  E EP   KD  ++   PH +++G 
Sbjct: 46  LKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 105

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++ + A+GA    I V       RES Q +++   A   L +  +        V      
Sbjct: 106 LLCAEAMGARTLVIGV------TRESTQRSMEAALAERGLSNGRRSALRAR--VQRNPVR 157

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A +    R G   Y 
Sbjct: 158 MVTGAAASLIRSIDGGPAIPPGRKVSASRSGVGGAPTLLSNAETFAQLAIAARIGPERYG 217

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G  +  GT + ++SG V  P  +E    +    +++     + G       V+ GG  
Sbjct: 218 NTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 272

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              + A  +  AI+  + L+++G  LG  A++ + + T  +    R++ +   ES GQC 
Sbjct: 273 GKWIDAATVDEAIVSRNSLQQVGGSLGAGAILPIGQDTCPLGESLRVAQWLAEESAGQCG 332

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           PC  G     R +E ++ G      ++ + +V+KN++ R  C+  D +A  ++  +K F
Sbjct: 333 PCYLGLPAAARGLEDILNG-GGPAALEAVKQVAKNVKRRGACSHPDGSAMFLESTVKAF 390


>gi|256787805|ref|ZP_05526236.1| oxidoreductase [Streptomyces lividans TK24]
          Length = 536

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 161/359 (44%), Gaps = 16/359 (4%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           L+GRGGAGF    K   + +    R     +VVN  E EP   KD  ++   PH +++G 
Sbjct: 58  LKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 117

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++ + A+GA    I V       RES Q +++   A   L +  +        V      
Sbjct: 118 LLCAEAMGARTLVIGV------TRESTQRSMEAALAERGLSNGRRSALRAR--VQRNPVR 169

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A +    R G   Y 
Sbjct: 170 MVTGAAASLIRSIDGGPAIPPGRKVSASRSGVGGAPTLLSNAETFAQLAIAARIGPERYG 229

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G  +  GT + ++SG V  P  +E    +    +++     + G       V+ GG  
Sbjct: 230 NTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 284

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              + A  +  AI+  + L+++G  LG  A++ + + T  +    R++ +   ES GQC 
Sbjct: 285 GKWIDAATVDEAIVSRNSLQQVGGSLGAGAILPIGQDTCPLGESLRVAQWLAEESAGQCG 344

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           PC  G     R +E ++ G      ++ + +V+KN++ R  C+  D +A  ++  +K F
Sbjct: 345 PCYLGLPAAARGLEDILNG-GGPAALEAVKQVAKNVKRRGACSHPDGSAMFLESTVKAF 402


>gi|256371785|ref|YP_003109609.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008369|gb|ACU53936.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 408

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 162/350 (46%), Gaps = 39/350 (11%)

Query: 54  GRGGAGFSTGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           GRGGAGF    K +    V S R P  +V N  ESEPG  KD+ ++ H PH +++G  +A
Sbjct: 59  GRGGAGFPLARKLA---AVASQRGPRVVVANGAESEPGARKDKALLTHAPHLVLDGLGLA 115

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172
           +  + A  A +               AV++  A+ +L    +   D  + V     +Y+ 
Sbjct: 116 TRLLEAREAIV---------------AVEDATAADVLERAIRERSDA-VRVALLDRSYLT 159

Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232
           G+ETALL +LEG+   PR +    A  G    PT V NVE++A      R G SW+   G
Sbjct: 160 GQETALLAALEGRPALPRFQLARVAERGYKSRPTLVANVETLAQWALAARFGTSWHQSAG 219

Query: 233 -RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG--GSS 289
            R ++R T++ SI+   + P  VE +   T   L++    G+  G    LA++ G  G  
Sbjct: 220 TRGHDRSTRIVSIALPGSTPTVVELAPGATVRSLLD--AVGVTTG----LALVGGLFGEL 273

Query: 290 VPCLPAGQMRGAIMD-YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348
           +       M   ++D  D   E+   LG  +V++   +T ++ A   L  +   E  GQC
Sbjct: 274 ISVADERAMARVLVDRADSSDEL--ALGAGSVLLAPSATCVVCATSELVGYLSEERAGQC 331

Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
            PC  G   + R +       A  R  + L  V++ I  R  CAL DAAA
Sbjct: 332 GPCDRGLPELARALG------AGARPAE-LATVARLIARRGACALPDAAA 374


>gi|307328405|ref|ZP_07607581.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Streptomyces violaceusniger Tu 4113]
 gi|306885978|gb|EFN16988.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Streptomyces violaceusniger Tu 4113]
          Length = 504

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 163/370 (44%), Gaps = 26/370 (7%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIM 98
           D ++   +   LRGRGGAGF    K   + +    R     +VVN  E EPG  KD  ++
Sbjct: 44  DELVALAENIDLRGRGGAGFPFATKVQAVVESAGRREGRCAVVVNGSEGEPGCLKDTALL 103

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
            H PH +I+G V+A+ A+GA    I V    +   ES+ AA+ E   SG           
Sbjct: 104 LHTPHLVIDGAVLAAEALGAEEVAIAVHRADV--EESVAAAIAERGPSG----------- 150

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           V + V+     ++ GE  A++  + G    P  +    ++ GL G PT ++N E+ A + 
Sbjct: 151 VPVSVNRTPDRFVAGEGGAVINGISGAPAIPNGRKIRTSDSGLSGLPTLLSNTETFAQLA 210

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
              R GA  Y   G     GT L ++ G   Y       + +T+   + + CG   G   
Sbjct: 211 VAARMGALPYRSVGLPTEPGTTLLTVGG--KYVMETPTGVPLTY---VLELCGLTPG--- 262

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV+ GG     L    +  A +  + +K+ G+ LG  AV+ +  +T  +    R++ 
Sbjct: 263 --QAVLVGGYHGKWLDPRSINAATISRESMKKYGARLGAGAVLPIPENTCPLGETARVAR 320

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           +   E+ GQC PC  G   +   + ++ +G  Q   ID +     ++ GR  C+  D  A
Sbjct: 321 WLAAETAGQCGPCFIGLPALADAIGQVERGGGQS-SIDNVRAYVNSVRGRGACSHPDGTA 379

Query: 399 WPIQGLIKNF 408
             +   +  F
Sbjct: 380 GFVTTALDAF 389


>gi|302560697|ref|ZP_07313039.1| oxidoreductase [Streptomyces griseoflavus Tu4000]
 gi|302478315|gb|EFL41408.1| oxidoreductase [Streptomyces griseoflavus Tu4000]
          Length = 523

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 16/359 (4%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           LRGRGGAGF    K   + +    R     +VVN  E EP   KD  ++   PH +++G 
Sbjct: 46  LRGRGGAGFPFHKKLRSVAESAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 105

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++ + A+GA    + V       RES Q +++   A    G N+     +   V      
Sbjct: 106 LLCAEAMGARTLVVGV------TRESTQRSMEAALAE--RGLNNGRRSALRARVQRNPVR 157

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A +    R G   Y 
Sbjct: 158 MVTGAAASLIRSIDGGPAIPPGRKVSASKNGVGGAPTLLSNAETFAQLAIAARIGPERYG 217

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G  +  GT + ++SG V  P  +E    +    +++     + G       V+ GG  
Sbjct: 218 NTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 272

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              + A  +  AI+  + L  +G  LG  A++ + + T  +    R++ +   ES GQC 
Sbjct: 273 GKWIDAATVNEAIISRNSLDAVGGSLGAGAILPISQDTCPLGESLRVAQWLAEESAGQCG 332

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           PC  G     R +E ++ G      ++ + +V++N++ R  C+  D +A  ++  +K F
Sbjct: 333 PCYLGLPAAARGLEDILNG-GGPAALEAVKQVARNVKRRGACSHPDGSAMFLESTVKAF 390


>gi|329934611|ref|ZP_08284652.1| putative Fe-S, FMN containing oxidoreductase [Streptomyces
           griseoaurantiacus M045]
 gi|329305433|gb|EGG49289.1| putative Fe-S, FMN containing oxidoreductase [Streptomyces
           griseoaurantiacus M045]
          Length = 543

 Score =  112 bits (281), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 162/360 (45%), Gaps = 18/360 (5%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEG 108
           L+GRGGAGF    K   + +       RP  +VVN  E EP   KD  ++   PH +++G
Sbjct: 58  LKGRGGAGFPFHKKLRSVAEQAIRRGTRP-VVVVNGSEDEPACRKDTVLINRAPHLILDG 116

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAG 168
            ++ + A+GA    + V       RES + ++++  A    G + + G  +   V     
Sbjct: 117 ALLVAEALGARTLVVGV------TRESTERSMEQALAE--RGLSDRRGAPIRARVQRNPV 168

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
             + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A +    R G   Y
Sbjct: 169 RMVTGAAASLIRSIDGGPAIPPGRKISASQSGVGGLPTLLSNAETFAQLAIAARIGPDRY 228

Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288
              G  +  GT + ++SG V  P  +E    +    +++     + G       V+ GG 
Sbjct: 229 RNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGY 283

Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348
               + A  +  AI+  + L  +G  LG  A++ + + T  +    +++ +   ES GQC
Sbjct: 284 HGKWIDAATVDEAIVSRNSLDAVGGSLGAGAILPIRQETCPLGESLQVAKWLAEESAGQC 343

Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            PC  G     R ME ++ G      ++ L +V+K ++ R  C+  D +A  ++  IK F
Sbjct: 344 GPCYLGLPAAARGMEDILNG-GGPAALEALKQVAKAVKRRGACSHPDGSAMFLESTIKAF 402


>gi|239931336|ref|ZP_04688289.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
          Length = 536

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 158/359 (44%), Gaps = 16/359 (4%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           LRGRGGAGF    K   + +    R     +VVN  E EP   KD  ++   PH +++G 
Sbjct: 58  LRGRGGAGFPFHKKLRSVAETAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 117

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++ + A+GA    + V       RES Q +++   A   L +  +        V      
Sbjct: 118 LLCAEAMGARTLVVGV------TRESTQRSMEAALAERGLSNGRRSALRAR--VQRNPVR 169

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A +    R G   Y 
Sbjct: 170 MVTGAAASLIRSIDGGPAVPPGRKTSASKNGVGGAPTLLSNAETFAQLAIAARIGPERYG 229

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G  +  GT + ++SG V  P  VE    +    +++     + G       V+ GG  
Sbjct: 230 NTGLYDEPGTVMLTVSGAVARPMVVEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 284

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              + A  +  AI+  + L  +G  LG  A++ + + T  +     ++ +   ES GQC 
Sbjct: 285 GKWIDAATVNEAIVSRNSLDAVGGSLGAGAILPISQDTCPLGESLMVAKWLAEESAGQCG 344

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           PC  G     R +E ++ G      ++ + +V+KN++ R  C+  D +A  ++  +K F
Sbjct: 345 PCYLGLPAAARGLEDILNG-GGPAALEAVKQVAKNVKRRGACSHPDGSAMFLESTVKAF 402


>gi|291439710|ref|ZP_06579100.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
 gi|291342605|gb|EFE69561.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
          Length = 524

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 158/359 (44%), Gaps = 16/359 (4%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           LRGRGGAGF    K   + +    R     +VVN  E EP   KD  ++   PH +++G 
Sbjct: 46  LRGRGGAGFPFHKKLRSVAETAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 105

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++ + A+GA    + V       RES Q +++   A   L +  +        V      
Sbjct: 106 LLCAEAMGARTLVVGV------TRESTQRSMEAALAERGLSNGRRSALRAR--VQRNPVR 157

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A +    R G   Y 
Sbjct: 158 MVTGAAASLIRSIDGGPAVPPGRKTSASKNGVGGAPTLLSNAETFAQLAIAARIGPERYG 217

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G  +  GT + ++SG V  P  VE    +    +++     + G       V+ GG  
Sbjct: 218 NTGLYDEPGTVMLTVSGAVARPMVVEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 272

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              + A  +  AI+  + L  +G  LG  A++ + + T  +     ++ +   ES GQC 
Sbjct: 273 GKWIDAATVNEAIVSRNSLDAVGGSLGAGAILPISQDTCPLGESLMVAKWLAEESAGQCG 332

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           PC  G     R +E ++ G      ++ + +V+KN++ R  C+  D +A  ++  +K F
Sbjct: 333 PCYLGLPAAARGLEDILNG-GGPAALEAVKQVAKNVKRRGACSHPDGSAMFLESTVKAF 390


>gi|331663798|ref|ZP_08364708.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit
           F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143]
 gi|331059597|gb|EGI31574.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit
           F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143]
          Length = 213

 Score =  111 bits (277), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 3/193 (1%)

Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
           WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G     A  PG
Sbjct: 3   WYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-KFKAWQPG 61

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F+  ESCG
Sbjct: 62  GAGTDFLTEAHLD-LPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCG 120

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLI 405
            CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A  P+Q  I
Sbjct: 121 WCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAI 180

Query: 406 KNFRPLIEERIDQ 418
           K FR   E  I Q
Sbjct: 181 KYFREEFEAGIKQ 193


>gi|256962026|ref|ZP_05566197.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           Merz96]
 gi|256952522|gb|EEU69154.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           Merz96]
          Length = 175

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 3/146 (2%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +D + + +    + I+NE+  + LRGRGGA +  G KW  +         Y+V NADE E
Sbjct: 31  FDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGE 89

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q A+D    +G 
Sbjct: 90  PGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGF 149

Query: 149 LGSN--SKLGYDVDIIVHHGAGAYIC 172
           LG N     G++ DI +  GAGAYIC
Sbjct: 150 LGENILGIEGFNYDITIISGAGAYIC 175


>gi|21234156|ref|NP_639733.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|13620642|emb|CAC36681.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
          Length = 525

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 169/372 (45%), Gaps = 16/372 (4%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRD 96
           G + +    +A  L+GRGGAGF    K   + +    R     +VVN  ES+P   KD  
Sbjct: 33  GGEQLAKLAEAINLKGRGGAGFPFHKKLRSVTEAAIKRGVRPVVVVNGSESDPSCRKDTV 92

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++   PH +++G ++ + A+GA    + V       RES Q +++   A   L SNS+  
Sbjct: 93  LINRAPHLILDGALLVAEALGARTLVVGV------TRESTQRSMEAALAERGL-SNSRRS 145

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
             +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A 
Sbjct: 146 A-LRASVQRNPVRMVTGSAASLIRSIDGGPAIPPGRKVSASQSGVGGAPTLLSNAETFAQ 204

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++     + G 
Sbjct: 205 LAIAARIGRERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGA 259

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 V+ GG     + A  +  AI+  + L  +G  LG  A++ + + T  +    ++
Sbjct: 260 PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPISQETCPLGEALQV 319

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
           + +   ES GQC PC  G     R +E ++ G      ++ L +V++N++ R  C+  D 
Sbjct: 320 AKWLAEESAGQCGPCYLGLPAAARGLEDILNG-GGPAALETLKQVARNVKRRGACSHPDG 378

Query: 397 AAWPIQGLIKNF 408
           +A  ++ +IK F
Sbjct: 379 SAMFLESMIKVF 390


>gi|302551362|ref|ZP_07303704.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736]
 gi|302468980|gb|EFL32073.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736]
          Length = 524

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 159/359 (44%), Gaps = 16/359 (4%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           L+GRGGAGF    K   + +    R     +VVN  E EP   KD  ++   PH +++G 
Sbjct: 46  LKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 105

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++ + A+GA    + V       RES Q +++   A   L +  +        V      
Sbjct: 106 LLCAEALGARTLVVGV------TRESTQRSMEAALAERGLSNGRRSALRAR--VQRNPVR 157

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A +    R G   Y 
Sbjct: 158 MVTGAAASLIRSIDGGPAVPPGRKVSASQNGVGGAPTLLSNAETFAQLAIAARIGPERYG 217

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G  +  GT + ++SG V  P  +E    +    +++     + G       V+ GG  
Sbjct: 218 NTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 272

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              + A  +  AI+  + L  +G  LG  A++ + + T  +    R++ +   ES GQC 
Sbjct: 273 GKWIDAATVNEAIVSRNSLDAVGGALGAGAILPITQDTCPLGESLRVAQWLAEESAGQCG 332

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           PC  G     R ME ++ G      ++ L +V+KN++ R  C+  D +A  ++  IK F
Sbjct: 333 PCYLGLPAAARGMEDILNG-GGPAALEALKQVAKNVKRRGACSHPDGSAMFLESTIKAF 390


>gi|284164323|ref|YP_003402602.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
 gi|284013978|gb|ADB59929.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
          Length = 565

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 175/398 (43%), Gaps = 65/398 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFST----GMKWSFMPKVCS----------DRPHYLVVNADE 86
           D  ++ V+  GL GRG   +S       +W    +  +          D P  +VVN +E
Sbjct: 170 DEALSRVRDVGLLGRGRGDWSVDDPVAEEWELAREAAAEGADEGDSEADEP-VVVVNGNE 228

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV---DEC 143
           S+     DR ++   P  +++G +  +  +GA    +Y      R RE +  A    +E 
Sbjct: 229 SDDRNATDRTLLEAAPGEVLDGALAVAELVGADDVVVYCNENDDRARERVHEAARNAEER 288

Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLY 202
           +A  L   + + G +V +    G   YI GE T  LE++EG  + + RL+PP PA  GLY
Sbjct: 289 FAERL---DRESGPEVVV----GPDRYIAGEPTMALEAMEGNDRLEARLRPPSPAEHGLY 341

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGREN-NRGTKLFSISGHVNYPCTVEESM--- 258
           G PT V+   ++A V    RR       F  ++ + GT+LF+++G V+   TVE      
Sbjct: 342 GRPTIVHTPRTMAQV----RRALLAPDEFDADDADPGTRLFTVTGDVDAAATVELPTGGS 397

Query: 259 ------SITFDELIEKHC-GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
                 ++  +   +  C GG  GG+   L+  P   S P L                  
Sbjct: 398 LADVRETVDLEGRFKMACVGGQFGGFTRSLSQSP---SAPAL-----------------E 437

Query: 312 GSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           G+ LGT  V+ +++    ++    R + F   E+CG+C  CREG+  +  ++  +  G  
Sbjct: 438 GAELGTEGVVELLNEDNCVLATAGRRANFAMEENCGRCVTCREGSQELTNMLRDIYDGQY 497

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           Q  +I    E+++ +   +IC  G  A  P    ++ F
Sbjct: 498 QDAKI---RELTRVMGETSICQFGRTAIRPAVTGMREF 532


>gi|46204507|ref|ZP_00049890.2| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
           subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 76

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/61 (75%), Positives = 53/61 (86%)

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGKKG PRLKP FPAN+GLYGCPT+VNNVESIAV  TILRRG +W++G G +NN GTKL
Sbjct: 1   MEGKKGMPRLKPTFPANMGLYGCPTSVNNVESIAVAGTILRRGGAWFAGLGAKNNTGTKL 60

Query: 242 F 242
           F
Sbjct: 61  F 61


>gi|290960411|ref|YP_003491593.1| oxidoreductase [Streptomyces scabiei 87.22]
 gi|260649937|emb|CBG73053.1| putative oxidoreductase [Streptomyces scabiei 87.22]
          Length = 537

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 163/359 (45%), Gaps = 16/359 (4%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           L+GRGGAGF    K   + +    R     +VVN  E EP   KD  ++   PH +++G 
Sbjct: 58  LKGRGGAGFPFHKKLRSVAESAIKRGIRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 117

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++ + A+GA    I V       RES + +++   A    G +++ G  +   V      
Sbjct: 118 LLVAEALGARQLVIGV------TRESTERSMEAALAE--RGLSNRRGAAIRASVQRNPVR 169

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A +    R G+  Y 
Sbjct: 170 MVTGAAGSLIRSIDGGPPIPPGRKTSASKSGVGGAPTLLSNAETFAQLAIGARIGSERYG 229

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G  +  GT + ++SG V  P  +E    +    +++     + G       V+ GG  
Sbjct: 230 NTGLYDEPGTVMLTVSGAVARPMVIEAPTGVPLRYILQ-----LAGAPPVPQGVLTGGYH 284

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              + A  +  A++  + L  +G  LG  A++ + + T  +    +++ +   ES GQC 
Sbjct: 285 GKWIDAATVNEAVVSRNSLDAVGGALGAGAILPISQDTCPLGESLQVAKWLAEESAGQCG 344

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           PC  G     R ME ++ G      ++ L +V+KN++ R  C+  D +A  ++  IK F
Sbjct: 345 PCYLGLPAAARGMEDILNG-GGPAALEALKQVAKNVKRRGACSHPDGSAMFLESTIKAF 402


>gi|86741278|ref|YP_481678.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Frankia sp. CcI3]
 gi|86568140|gb|ABD11949.1| NADH dehydrogenase subunit F [Frankia sp. CcI3]
          Length = 510

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 161/412 (39%), Gaps = 63/412 (15%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPK-VCSDRPH----------------------- 78
           ++ E+  SGL GRGGA F T  K +   +  C D  H                       
Sbjct: 97  LLPEIHDSGLTGRGGAAFPTWRKLAASAEGTCLDGSHSGSAHRGSTHRGSQHRNAGHRAD 156

Query: 79  --------YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
                    +V NA E EP + KD  ++   PH +++G  +A+ A+GA  AF+Y      
Sbjct: 157 RYRSSAHPVVVANAAEGEPESAKDVTLLTVAPHLVLDGLQLAAEAVGADDAFVY------ 210

Query: 131 RERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQP 189
                L+           L      G+D   + +      ++ GE +A++ +LEG   +P
Sbjct: 211 -----LKPGPAVTAVRRALAQRRAAGWDRFTVQIREAPETFVAGEASAVIAALEGGAARP 265

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R      A  G +G PT V N E++A +  I R GASW+   G     GT L +++G V 
Sbjct: 266 RAHWQPLAEAGFHGRPTLVQNAETLAHLALIARWGASWFRSVGTAEEPGTFLATVTGAVA 325

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGW-DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
            P  VE         L +     + GG+ + + A   GG S   LP G      M    L
Sbjct: 326 APGVVEVPFGTPLGTLAQ-----LAGGFTEQVGAFRVGGYSGAWLPGGPGATIAMSRAAL 380

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK- 367
              G+  GT  V V+      +    R+  +   ++ GQC PC  G   +   +  + + 
Sbjct: 381 APWGAAPGTGVVAVLPARGCGLVETARIVGYLAAQNAGQCGPCVSGLPQLADAVAGMART 440

Query: 368 -----------GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
                      G   +  I  L  ++  + GR  C   D AA  +   ++ F
Sbjct: 441 DGGSGGPVQGAGDPGQSAIRAL-RLAALVAGRGACHHPDGAARLVHSALRTF 491


>gi|238060461|ref|ZP_04605170.1| oxidoreductase [Micromonospora sp. ATCC 39149]
 gi|237882272|gb|EEP71100.1| oxidoreductase [Micromonospora sp. ATCC 39149]
          Length = 382

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 158/367 (43%), Gaps = 42/367 (11%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIMRH 100
           ++   +A  L+G+GGAGF    K   + + C   D    +VVNA E EP + KD+ ++  
Sbjct: 46  LLRLAEAIQLKGKGGAGFPFARKLRAVLESCERQDASAIVVVNATEGEPASWKDKVLLAR 105

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            PH +++G  + ++A+ A    I V  + +  R SL  A+ E           ++     
Sbjct: 106 APHLILDGAALVAYALDADEIVIGVADDDV-GRPSLTEALQE----------RRMPVPTS 154

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           ++       +I GE  AL+  + G    P       ++ G+ G PT ++N E+ A +   
Sbjct: 155 MVTVPDR--FISGEGGALVNGINGLPHIPPGTKKRSSDSGVNGLPTLLSNAETYAQLAVA 212

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE---------KHCG 271
            R G   Y+  G ++  GT L +++G    P  VE +      +++E            G
Sbjct: 213 ARLGPYEYAALGTDDEPGTLLLTVTGAAKRPAVVECAAGTPLRDILELCEVPDGPGVLMG 272

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G  G W               + A   + A +   GL  +G  LG   ++ + R T  + 
Sbjct: 273 GYHGKW---------------ITAEAAQRAEVSRKGLTAVGGTLGAGIIVPLGRDTCPLG 317

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
              ++  +   ES GQC PC+ G   + R ++  V G A    I+++   + +++GR  C
Sbjct: 318 EAAQVVRYLAGESAGQCGPCKMGLPDLARAVDLAVSGSAP---IEIVRAAAGDVKGRGAC 374

Query: 392 ALGDAAA 398
           +  D  A
Sbjct: 375 SHPDGTA 381


>gi|29832029|ref|NP_826663.1| oxidoreductase [Streptomyces avermitilis MA-4680]
 gi|29609147|dbj|BAC73198.1| putative oxidoreductase [Streptomyces avermitilis MA-4680]
          Length = 524

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 162/359 (45%), Gaps = 16/359 (4%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           L+GRGGAGF    K   + +    R     +VVN  E EP   KD  ++   PH +++G 
Sbjct: 46  LKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDTVLINRAPHLILDGA 105

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++ + A+GA    I V  E  +   S++AA+ E       G +++ G  +   V      
Sbjct: 106 LLVAEALGARTLVIGVTRESTQR--SMEAALSE------RGLSNRRGAAIRARVQRNPIR 157

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A +    R GA  Y 
Sbjct: 158 MVTGAAASLIRSIDGGPAIPPGRKVSASQNGVGGAPTLLSNAETFAQLAIAARIGAERYC 217

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G  +  GT + ++SG V  P  +E    +    +++     + G       V+ GG  
Sbjct: 218 NTGLYDEPGTVMLTVSGAVARPMVLEVPTGVPLRYVLQ-----LAGAPPVPQGVLTGGYH 272

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              + A  +  AI+  + L  +G  LG  A++ + + T  +    R++ +   ES GQC 
Sbjct: 273 GKWIDAATVNEAIVSRNSLDAVGGALGAGAILPISQETCPLGESLRVAQWLADESAGQCG 332

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           PC  G     R M  ++ G      ++ L +V+K ++ R  C+  D +A  ++  +K F
Sbjct: 333 PCYLGLPAAARGMADILNG-GGPAALEALKQVAKAVKRRGACSHPDGSAMFLESTVKAF 390


>gi|307942123|ref|ZP_07657474.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4]
 gi|307774409|gb|EFO33619.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4]
          Length = 77

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/62 (72%), Positives = 54/62 (87%)

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M RVMER+VKG +   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFRPLIE+RID
Sbjct: 1   MWRVMERMVKGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIRNFRPLIEQRID 60

Query: 418 QY 419
            Y
Sbjct: 61  DY 62


>gi|254383432|ref|ZP_04998783.1| oxidoreductase [Streptomyces sp. Mg1]
 gi|194342328|gb|EDX23294.1| oxidoreductase [Streptomyces sp. Mg1]
          Length = 481

 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 159/370 (42%), Gaps = 27/370 (7%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP--HYLVVNADESEPGTCKDRDIM 98
           D +I+  +A  LRGRGGAGF    K   + +    +     +VVNA E EP   KD  ++
Sbjct: 45  DDLIDLAEAIDLRGRGGAGFPFHRKLRAVMRSARAKEGRSAVVVNASEGEPSCLKDTALL 104

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
            H PH +++G  +A+ A+GA    + V       R+ ++ +V +  A        + G  
Sbjct: 105 LHVPHVVLDGAQLAADALGAEDVVVGV------TRDDVERSVRDAIA--------ERGPG 150

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             + V      ++ GE T+++  +EG    P  +    +  GL G PT ++N E+ A + 
Sbjct: 151 TRLRVSRLPERFVTGEGTSMINGIEGNPAVPNGQKVRTSERGLTGLPTLLSNTETYAQLA 210

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
              R GA+ Y+  G     GT + ++SG      T  E  S T    + + CG   G   
Sbjct: 211 IAARLGAAGYNSVGLPAEPGTLMLTVSG-----ATAVEIPSGTSLAYVLELCGSSPG--- 262

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               V+ GG     L       A++    L    + LG  AV+ +   T     + R++ 
Sbjct: 263 --QGVLVGGYHGRWLTPEDASQALLSRQSLAAFDAVLGAGAVLPLPEDTCPAGEVARVTR 320

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           +   E+ GQC PC  G   +   +E++V G   +   + +    + + GR  C+  D  +
Sbjct: 321 WMADETAGQCGPCVRGLPSLATAVEQMVAG-GGRATFEAVEARMRAVRGRGACSHPDGTS 379

Query: 399 WPIQGLIKNF 408
             +   +  F
Sbjct: 380 GFVASALNVF 389


>gi|237800540|ref|ZP_04589001.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023400|gb|EGI03457.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 148

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 66/96 (68%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           + ++  D I+  VK SGL+GRGGAGF TG+KW  MPK  S    YL+ NADE EP T KD
Sbjct: 50  LTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKD 109

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           R +M   PH LIEG +I++ A+ A+  +I++RGE++
Sbjct: 110 RMLMEQLPHLLIEGMLISARALKAYRGYIFLRGEYV 145


>gi|111223357|ref|YP_714151.1| putative oxidoreductase [Frankia alni ACN14a]
 gi|111150889|emb|CAJ62594.1| Putative oxidoreductase [Frankia alni ACN14a]
          Length = 347

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 133/292 (45%), Gaps = 19/292 (6%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NA E EP + KD  ++   PH +++G  +A+ A+GA  AF+YV+          QA 
Sbjct: 4   VVANAAEGEPESAKDATLLAVAPHLVLDGVQLAAEAVGAADAFVYVKAGSAAAAAVRQAV 63

Query: 140 VDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            +   A          G+D   I V      ++ GE +A++ +L+G   +PR      A+
Sbjct: 64  AERRAA----------GWDRCGIEVREAPATFLAGEASAVVAALDGAAARPRAHWRPLAD 113

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL G PT V+NVE++A + TI R GA W+   G  +  GT L +++G V  P  VE   
Sbjct: 114 AGLRGRPTLVHNVETLAHLATIARWGAPWFRSVGTADEPGTLLVTVTGAVAGPGVVEVPC 173

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
                 L+    G +    + + AV  GG +   LP        M  +GL   G+  G  
Sbjct: 174 GTPLGALVGSRGGAV----EPVGAVRVGGYAGTWLPGAVAAAVPMSREGLASWGATPGPG 229

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            V V+      +    R+  +   ++ GQC PC  G    +  + R V G+A
Sbjct: 230 IVSVLPAHACGLAETARIVAYLAGQNAGQCGPCVSG----LPQLARSVAGVA 277


>gi|260653770|dbj|BAI44425.1| putative NADH dehydrogenase I, F subunit [Monochamus alternatus]
          Length = 77

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 57/76 (75%)

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           NLLA+IPGGSSVP +P        MD+D L+   SGLGTAAVIVMD+ T+II AI +LS 
Sbjct: 1   NLLAIIPGGSSVPLIPKSICDTIEMDFDSLRTAQSGLGTAAVIVMDKLTEIIAAIEKLSH 60

Query: 339 FYKHESCGQCTPCREG 354
           FY +E CGQCTPCREG
Sbjct: 61  FYMYEFCGQCTPCREG 76


>gi|284172809|ref|YP_003406191.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
 gi|284017569|gb|ADB63518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
          Length = 507

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 160/370 (43%), Gaps = 48/370 (12%)

Query: 53  RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           RGRG A     +   +     +D    +V NA+E+      D  ++   P  +++G    
Sbjct: 155 RGRGDAAADDPVTDVWETARDADGDPVVVANANETRDEQRADEVLLGGAPIAVLDGIAAV 214

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172
           +  +GA  A +Y+  E       L+ A+D    +G L    +L          G   Y  
Sbjct: 215 AEYVGADDAVVYLNEEDSHLHRHLREAIDAV--AGELPIVPQL--------VAGPDEYRA 264

Query: 173 GEETALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
           G  TA LE++EG  + +PRL+PP PA  GLYG PT ++   + A V   +R   ++ +  
Sbjct: 265 GAPTAALEAMEGADRIEPRLQPPSPAEYGLYGRPTVIHTPRTFAQVRRAIRDSDAFDADA 324

Query: 232 GRENNRGTKLFSISGHVNYPCTVE----ESMSITFDEL-----IEKHC-GGIRGGWDNLL 281
               + GT+L +++G V  P T+E     S+S+  D +      +  C GG+ GG    L
Sbjct: 325 ---ADPGTRLITVAGDVADPATIELPSDSSLSVVRDAVELTGSFKMACVGGVLGGITRSL 381

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI-VMDRSTDIIKAIWRLSVFY 340
            V P   S+                      +GLGT  V+ +++    ++  +   + F 
Sbjct: 382 DVAPTAQSL--------------------AAAGLGTDGVVELLNDDRCVVADVGERARFA 421

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
             E+ G+C P REGT  +  ++  + +G     E D + E+ + +   + C +G  A  P
Sbjct: 422 STENSGRCVPGREGTKQLTELLRDVYQG---SLEADTIRELGRVMARSSNCQIGAHAPRP 478

Query: 401 IQGLIKNFRP 410
           +   I  F P
Sbjct: 479 VTTAIDEFEP 488


>gi|302540307|ref|ZP_07292649.1| putative oxidoreductase [Streptomyces hygroscopicus ATCC 53653]
 gi|302457925|gb|EFL21018.1| putative oxidoreductase [Streptomyces himastatinicus ATCC 53653]
          Length = 497

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 155/370 (41%), Gaps = 26/370 (7%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY--LVVNADESEPGTCKDRDIM 98
           D ++   +   LRGRGGAGF    K + + +          +VVN  E EP   KD  ++
Sbjct: 37  DELVALAENIDLRGRGGAGFPFAKKVTAVVEAAGRAGGRCNVVVNGSEGEPSCLKDTALL 96

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
            H PH +I+G  +A+ AIGA    I      +   ESL AA+ E   SG           
Sbjct: 97  LHTPHLVIDGATLAAEAIGAEEVVIACHRPDV--EESLNAAIAERGPSG----------- 143

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           V + V      ++ GE  A++  + G    P  +    +  GL G PT ++N E+ A + 
Sbjct: 144 VPVEVSVTPDRFVAGEGGAVINGISGAPAIPNGRKIRSSENGLGGLPTLLSNTETYAQLA 203

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
              R GA  Y   G     GT L ++ G   Y       + +T+   + + CG   G   
Sbjct: 204 VAARMGALPYRSVGLPTEPGTTLLTVGG--KYVMETPTGVPLTY---VLELCGLTPG--- 255

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               V+ GG     L    +  A +  + +K+ G+ LG  AV+ +   T  +    R++ 
Sbjct: 256 --QGVLVGGYHGKWLDPKSIGAATISRESMKKYGARLGAGAVLPIPEDTCPLGETARVAR 313

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           +   E+ GQC PC  G   +   + ++ +G  Q   ID +     ++  R  C+  D  A
Sbjct: 314 WLAAETAGQCGPCFIGLPALADAIGQVERGGGQS-SIDNVRAYINSVRKRGACSHPDGTA 372

Query: 399 WPIQGLIKNF 408
             +   +  F
Sbjct: 373 GFVTTALDAF 382


>gi|323168547|gb|EFZ54227.1| NADH-quinone oxidoreductase subunit F domain protein [Shigella
           sonnei 53G]
 gi|323171965|gb|EFZ57609.1| NADH-quinone oxidoreductase subunit F domain protein [Escherichia
           coli LT-68]
          Length = 196

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 3/176 (1%)

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
            SG V  P   E     T  E++E + GG+R G     A  PGG+    L    +    M
Sbjct: 3   FSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAHLD-LPM 60

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           +++ + + GS LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++ 
Sbjct: 61  EFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILR 120

Query: 364 RLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            L +G  Q  +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 121 ALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 176


>gi|168038274|ref|XP_001771626.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677065|gb|EDQ63540.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 195

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 61/78 (78%), Gaps = 3/78 (3%)

Query: 144 YASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
           + +GL G+N+   G+ +D+++HHGA AYICGE+T  LESLEGK+ +PRLKPPFPAN GLY
Sbjct: 39  WKTGLPGNNACGSGHALDVLIHHGACAYICGEDTTPLESLEGKQNKPRLKPPFPANAGLY 98

Query: 203 GCPTTVNNVESIAVVPTI 220
           G PTTV NV   AV P+I
Sbjct: 99  GFPTTVTNVA--AVEPSI 114



 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + L  E++   E   ICAL DAA WP+QGLI++F
Sbjct: 124 LSLKQEITVKNERSAICALIDAAVWPVQGLIRHF 157


>gi|167946814|ref|ZP_02533888.1| NADH dehydrogenase (ubiquinone), F subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 109

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 3/93 (3%)

Query: 20  LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L    SRG ++ + KIL++    + +I EVK SGLRGRGGAGF TG+KWSF+ +    + 
Sbjct: 18  LEQYQSRGGYEVLKKILKEKTPPEQLIEEVKQSGLRGRGGAGFPTGLKWSFITRNAPGQ- 76

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCV 110
            Y+V N+DE EPGT KDRDI+R+ PH LIEG +
Sbjct: 77  KYVVCNSDEGEPGTFKDRDILRYNPHQLIEGMI 109


>gi|110589186|gb|ABG77102.1| NADH dehydrogenase I ubiquinone reductase; F subunit 51 kDa
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 115

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 3/93 (3%)

Query: 20  LSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L    SRG ++ + KIL++    + +I EVK SGLRGRGGAGF TG+KWSF+ +    + 
Sbjct: 24  LEQYQSRGGYEVLKKILKEKTPPEQLIEEVKQSGLRGRGGAGFPTGLKWSFITRNAPGQ- 82

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCV 110
            Y+V N+DE EPGT KDRDI+R+ PH LIEG +
Sbjct: 83  KYVVCNSDEGEPGTFKDRDILRYNPHQLIEGMI 115


>gi|268323919|emb|CBH37507.1| putative Fe-only hydrogenase, N-terminus [uncultured archaeon]
          Length = 117

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 1/98 (1%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           +  G + +++K L+     II+EVK SGL GRGGA F TG+KW F  K  S+   Y+V N
Sbjct: 21  IKTGGYSSLEKALQMQPHDIIDEVKKSGLVGRGGAAFPTGLKWEFTRK-ESEELKYVVCN 79

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           ADE EPGT KDR I+++ PH L+E  +IA +AIGA  A
Sbjct: 80  ADEGEPGTFKDRVILKNNPHLLVESMIIAGYAIGAKEA 117


>gi|73982775|ref|XP_864277.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 3 [Canis familiaris]
          Length = 120

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/70 (64%), Positives = 50/70 (71%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPK 71
           TG+KWSFM K
Sbjct: 95  TGLKWSFMNK 104


>gi|256396547|ref|YP_003118111.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Catenulispora acidiphila DSM 44928]
 gi|256362773|gb|ACU76270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Catenulispora acidiphila DSM 44928]
          Length = 418

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 164/391 (41%), Gaps = 51/391 (13%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D ++N +KA+GLRGRGGAGF    K   + +     P  +V N  E EPG+ KDR +MR 
Sbjct: 40  DLLVNRIKAAGLRGRGGAGFPAAAKLLAV-RAAGSVP-VVVANGGEGEPGSVKDRWLMRA 97

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            PH +++G + A+    A   ++YV  +   E      A  E Y              V 
Sbjct: 98  RPHLVLDGMLRAADITRAARCYVYVADDEAAESMRRALAEREPY--------------VP 143

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
             +   A  Y+ GEETA++  + G    P  KPP P   G+ G PT V NVE++A +  +
Sbjct: 144 TQIVRVAHTYVAGEETAVVRRINGGPALPTAKPPRPFESGVDGVPTLVANVETLARIALL 203

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
                       R     + L ++SG    P  VE  +  +   L  +         D L
Sbjct: 204 ----------AARPQTPDSLLLTVSGPGLEPELVEAPVGTSLQALAYRA--------DRL 245

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLK---------EMGSGLGTAAVIVMDRSTDIIK 331
                     P +  G M G I+D  GL+           GS LG  AV  +      + 
Sbjct: 246 --------GTPGVLMGGMFGGILDPRGLRTELEAAALTAAGSALGCGAVHFLAPGECPVA 297

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
                  F   ES  QC  C  GT  + R M   V G A+  ++  L + S+++  R  C
Sbjct: 298 LAAEGLAFLADESSRQCGVCVTGTAALARTMASAVHGTAEPDDLARLSKWSQSLRRRGAC 357

Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            L DAAA     L+++F PL E  I+    C
Sbjct: 358 GLLDAAANLAASLLRSFGPLTEAHIEGRSPC 388


>gi|297162339|gb|ADI12051.1| oxidoreductase [Streptomyces bingchenggensis BCW-1]
          Length = 503

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 158/370 (42%), Gaps = 26/370 (7%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIM 98
           D ++   +   LRGRGGAGF    K + + +    R     +VVN  E EP   KD  ++
Sbjct: 47  DELVALAENIDLRGRGGAGFPFAKKVTAVIESAGRRDGRCAVVVNGSEGEPSCLKDTALL 106

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
            H PH +I+G V+A+ A+GA    I V    +   ESL AA+ E    G  G   ++   
Sbjct: 107 LHTPHLVIDGAVLAATAMGADDVAIAVHRPDV--EESLSAAIAE---RGPSGPRVQVSVT 161

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D         ++ GE  A++  + G    P  +    ++ GL G PT ++N E+ A + 
Sbjct: 162 DD--------RFVAGEGGAVINGISGAPAIPNGRKIRTSDSGLAGLPTLLSNTETFAQLA 213

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
              R GA  +   G     GT L ++ G       +E    +    ++E  CG   G   
Sbjct: 214 VAARMGALPFRSVGLPTEPGTTLLTVGGKF----VMETPFGVPLSYVLEL-CGLTPG--- 265

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               V+ GG     L    +    +  + +++  + LG  AV+ +  +T  +    R++ 
Sbjct: 266 --QGVLVGGYHGKWLLPDSLASVNISRESMEKYNARLGAGAVLPIPENTCPVGETARVAR 323

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           +   E+  QC PC  G   +   + ++ +G  Q   +D +    ++++ R  C+  D  A
Sbjct: 324 WLAGETANQCGPCFIGLPALADAIGQVERGGGQA-ALDTVSAYIESVKRRGACSHPDGTA 382

Query: 399 WPIQGLIKNF 408
             +   +  F
Sbjct: 383 GFVTTALDAF 392


>gi|239941073|ref|ZP_04693010.1| oxidoreductase [Streptomyces roseosporus NRRL 15998]
 gi|239987553|ref|ZP_04708217.1| oxidoreductase [Streptomyces roseosporus NRRL 11379]
 gi|291444513|ref|ZP_06583903.1| oxidoreductase [Streptomyces roseosporus NRRL 15998]
 gi|291347460|gb|EFE74364.1| oxidoreductase [Streptomyces roseosporus NRRL 15998]
          Length = 525

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 152/349 (43%), Gaps = 16/349 (4%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           LRGRGGAGF  G K   + K    R     +V+N  E EP   KD  ++   PH +++G 
Sbjct: 58  LRGRGGAGFPFGKKLRAVAKASIRRGVRPVVVINGSEGEPACRKDTVLLNRAPHLILDGA 117

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++A+ A+GA    + V       R S + +V    A    G + + G  +   V      
Sbjct: 118 LLAAEALGARTLVVAV------TRNSTEISVRAALAE--RGLSDRRGQQLRARVVRTPER 169

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + GE ++++ +  G    P  +    A  G+ G PT ++N E+ A +    R G   Y 
Sbjct: 170 MVSGEASSVIRAANGGPALPPGRRERAAETGVGGAPTLLSNAETYAQLAVAARIGPRRYG 229

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G  N  GT L ++SG V  P  VE    +    ++E     + G       V+ GG  
Sbjct: 230 HTGLPNEPGTVLLTVSGAVARPMVVEVPTGVPLRYVLE-----MAGAPPLPQGVLTGGYH 284

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              + A     A++  + L  +G  LG  A++ +   T  +    R++ +   E+ GQC 
Sbjct: 285 GNWIDAVSSHNAVVSRESLATVGGALGAGAILPIGPDTCPLGESLRIANWLAAETAGQCG 344

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           PC+ G       +  ++ G      ++ L EV++ ++GR  C   D +A
Sbjct: 345 PCKLGLPAAAGGLSDVLNG-GGPAALEALREVTQAVKGRGACKHPDGSA 392


>gi|325303370|tpg|DAA34498.1| TPA_inf: NADH dehydrogenase I subunit F [Amblyomma variegatum]
          Length = 122

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 53/76 (69%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIF NLYG     L  +MSRG W    +I+ KG DWII+E+K SGLRGRGGAGF 
Sbjct: 47  LKDEDRIFQNLYGRHDWRLKGAMSRGDWYKTKEIVLKGPDWIIDEIKKSGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSDRP 77
           +G+KWSFM K    RP
Sbjct: 107 SGLKWSFMNKPSDGRP 122


>gi|297199617|ref|ZP_06917014.1| oxidoreductase [Streptomyces sviceus ATCC 29083]
 gi|197713457|gb|EDY57491.1| oxidoreductase [Streptomyces sviceus ATCC 29083]
          Length = 505

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 165/372 (44%), Gaps = 16/372 (4%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRD 96
           G + +    +A  L+GRGGAGF    K   + +    R     +VVN  E EP   KD  
Sbjct: 13  GGEQLAKLSEAINLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDTV 72

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++   PH +++G ++A+ A+GA    I V       RES Q +++   A   L +  +  
Sbjct: 73  LINRAPHLILDGALLAAEALGARTLVIGV------TRESTQRSMEAALAERGLSNGRRSA 126

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A 
Sbjct: 127 LRAR--VQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASQNGVGGAPTLLSNAETFAQ 184

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++     + G 
Sbjct: 185 LAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQ-----LAGA 239

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 V+ GG     + A  +  AI+  + L  +G  LG  A++ + + T  +    R+
Sbjct: 240 PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPITQETCPLGESLRV 299

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
           + +   ES GQC PC  G     R ME ++ G      ++ L +V+KN++ R  C+  D 
Sbjct: 300 AQWLAEESAGQCGPCYLGLPAAARGMEDILNG-GGPAALEALKQVAKNVKRRGACSHPDG 358

Query: 397 AAWPIQGLIKNF 408
           +A  ++  IK F
Sbjct: 359 SAMFLESTIKAF 370


>gi|330469511|ref|YP_004407254.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Verrucosispora maris AB-18-032]
 gi|328812482|gb|AEB46654.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Verrucosispora maris AB-18-032]
          Length = 488

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 42/355 (11%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           L+G+GGAGF    K   + + C   D P  +VVNA E EP + KD+ I+   PH +++G 
Sbjct: 57  LKGKGGAGFPFARKLRAVLESCERQDLPPVVVVNATEGEPASWKDKVILTRAPHLILDGA 116

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
            +A+FA+ A    + V  + I  R+SL  A++E            +   V  + H     
Sbjct: 117 ALAAFALDAEEIVLCVADDLI-GRDSLMEALEE--------RRMPVPTSVVTVPHR---- 163

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
           +I GE  AL+  + G    P       ++ G+   PT ++N E+ + +    R G   Y+
Sbjct: 164 FISGEGGALVNGINGLPHIPPGTKKRSSDSGVNNLPTLLSNAETYSQMAIAARLGPYEYA 223

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK---------HCGGIRGGWDNL 280
             G ++  GT L SI+G       VE +      E++E            GG  G W   
Sbjct: 224 ALGTDDEPGTVLLSITGAAKRHAVVECAAGTPLREILELCEVPEGPGILMGGYHGKWITW 283

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
            A                  A +   GL  +G  LG   ++ +   T  +    ++  + 
Sbjct: 284 EAA---------------NKAEVSRKGLAAVGGTLGAGIIVPLANDTCPLGEAAQVVRYL 328

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
             ES GQC PC+ G   + R ++  V G A    ++++   + +++GR  C+  D
Sbjct: 329 AGESAGQCGPCKRGLPDLARAVDLAVSGSAP---VEVVRAAAGDVKGRGACSHPD 380


>gi|258651844|ref|YP_003201000.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nakamurella multipartita DSM 44233]
 gi|258555069|gb|ACV78011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nakamurella multipartita DSM 44233]
          Length = 426

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 142/330 (43%), Gaps = 23/330 (6%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNAD 85
           H   V  +  +    +   V A+GL+GRGGAGF T  K + +      + RP  +V N  
Sbjct: 32  HHRRVGALPHRSATELAAMVDAAGLQGRGGAGFPTARKIAAVAAAVGKTRRPAVVVANCC 91

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +P   KDR ++   PH +I+G V A+ A+ A    + V       R++L  A+ E   
Sbjct: 92  EGDPTAAKDRVLIDRSPHLVIDGAVAAARAVRADRVVLAVH-HGSPARQTLAVALTE--- 147

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                   +    V I V      Y+  E TALL  L+    +P  + P     G+ G P
Sbjct: 148 --------RPDERVRIEVVAVPARYLASEATALLRFLDTGDARPAGRLPI-WEKGVEGRP 198

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T V+N E+ A +  I R GA W+   G     GT L ++ G V  P  +E     +  ++
Sbjct: 199 TLVDNAETFAHLALIARFGAGWFGAVGHPAEPGTMLLTLGGAVPRPGVIEVPTGASVRDV 258

Query: 266 IEKHCGGIR-GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           +   C G R  GW    A+I GG +   +   +  G  +    LKE+G   G  ++ V+ 
Sbjct: 259 LA--CAGSRPTGW----ALI-GGLAGRWMNLDRSAGIGLSTPELKEIGMTRGVGSLTVLP 311

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
               +++   R+          QC PC  G
Sbjct: 312 PGACLLQETTRIVTHQAQAGARQCGPCMFG 341


>gi|119718646|ref|YP_925611.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Nocardioides sp. JS614]
 gi|119539307|gb|ABL83924.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Nocardioides sp. JS614]
          Length = 412

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 140/351 (39%), Gaps = 47/351 (13%)

Query: 54  GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113
           GRGGA F    K   +P     +   ++VN  ESEP + KDR +M   PH +++G +  +
Sbjct: 52  GRGGAAFPVATKLLAVPTGSRTQ---VLVNGSESEPASRKDRTLMTLTPHLVLDGALAVA 108

Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICG 173
            A+      I V         SL+ A+DE         +  +   VD+     AG ++ G
Sbjct: 109 RALRTRHVTIAVHDAA--ALASLRTALDE------RARDEPIHERVDL--RRTAGRFVSG 158

Query: 174 EETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR 233
           E  ALL  L+G    P  +   P++ GL G PT  +NVE+ A V  ++  GA+ +   G 
Sbjct: 159 EVRALLRGLDGGPAVPPSRRTLPSDSGLRGAPTFASNVETFAQVALLVSLGATEFGAVGN 218

Query: 234 ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH-----CGGIRGGW----DNLLAVI 284
               GT L ++ G       VE    +  D L+         GG  G W    D L A  
Sbjct: 219 PEEPGTTLLTLLGDTRTQGVVEVPTDLPLDALLPGAGGPVLVGGYHGRWVRDVDGLAAAR 278

Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES 344
           P                     GL+  G  L    V  + R    +  +  ++ +   +S
Sbjct: 279 P---------------------GLRAAGLPLNAGVVARLPREVCALAEVTAVTRWLAAQS 317

Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
            GQC PC  GT  +   +  L+ G    R    +    + + GR  CA  D
Sbjct: 318 AGQCGPCLYGTAALAHDVGELLHG----RAAPAVEARLRGLVGRGACAHPD 364


>gi|291334210|gb|ADD93877.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
          Length = 92

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 56/79 (70%)

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVIPGGSSVP +    +    MDY+ L ++G+ LG+  +IVMD ST ++  + R+S FY 
Sbjct: 13  AVIPGGSSVPVVKGEDIMDIPMDYESLMKIGTMLGSGGIIVMDESTCMVSVLERISRFYY 72

Query: 342 HESCGQCTPCREGTGWMMR 360
            ESCGQCTPCREGTGW+ +
Sbjct: 73  AESCGQCTPCREGTGWLYK 91


>gi|110667102|ref|YP_656913.1| NAD-reducing hydrogenase, alpha subunit [Haloquadratum walsbyi DSM
           16790]
 gi|109624849|emb|CAJ51258.1| NAD-reducing hydrogenase, alpha subunit [Haloquadratum walsbyi DSM
           16790]
          Length = 502

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 156/367 (42%), Gaps = 44/367 (11%)

Query: 53  RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           RG G A   + +  ++M    ++    +V+NA  S PG   D  ++   P T+++G V  
Sbjct: 155 RGWGDACHDSPLTKTWMDADDAEGEAAIVINA-HSNPG---DSLLLSSVPFTILDGAVSL 210

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172
           +  + A    I+         E+ + A+D         + S +   +D++   G   Y  
Sbjct: 211 AQTVDASEIVIFASIADESTIETARTAIDR------YPNESSIA--IDLVT--GPAEYRA 260

Query: 173 GEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
            E T  LE++EG  + + RL+PP P +VGLYG PT ++   ++A +   LR  +      
Sbjct: 261 AEPTMALEAIEGNHRLEARLRPPGPESVGLYGRPTLIHTARTLAHLAVSLREDSI----- 315

Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
             +++  T++ SI G V     +E   + T    +E  C           A    G    
Sbjct: 316 --DSHPSTRIMSIEGDVTDRTIIEVPETTT----LETVCAA---------ADTTDGIKAA 360

Query: 292 CLPAGQMRGAIMDYDGLKE----MGSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCG 346
           C+  G+  G   D D   +    + + LGT  ++ V+     +++ +   + F   E+CG
Sbjct: 361 CV-GGRFGGLAADLDISVDPETLIDANLGTEGIVHVLSEDRCVVEFVGERAQFAAEENCG 419

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           +C PCREGT  +  ++  L  G  Q   ID L  V       +IC  G  A  P Q  + 
Sbjct: 420 RCVPCREGTTQLAELLRSLYDGTYQPEAIDELIRVMTTT---SICEFGVNAGRPTQTALN 476

Query: 407 NFRPLIE 413
            F    E
Sbjct: 477 AFESEFE 483


>gi|409554|gb|AAA53584.1| NADH ubiquinone oxidoreductase subunit [Escherichia coli str. K-12
           substr. W3110]
          Length = 112

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 50/67 (74%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D IIN+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +M  
Sbjct: 46  DEIINQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRLLMEQ 105

Query: 101 EPHTLIE 107
            PH L+E
Sbjct: 106 LPHLLVE 112


>gi|292494173|ref|YP_003533316.1| putative NADH dehydrogenase I, F subunit [Haloferax volcanii DS2]
 gi|291369052|gb|ADE01282.1| putative NADH dehydrogenase I, F subunit [Haloferax volcanii DS2]
          Length = 479

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 150/359 (41%), Gaps = 67/359 (18%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE-----RE 134
           +VVNA++++     DR ++   P ++++G    +  +G   A I+V  E   E     RE
Sbjct: 155 VVVNANDADDRQRADRTLLAGSPMSVLDGVAAVAEYLGTTEAVIHV-AETDTELQAHLRE 213

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG-KKGQPRLKP 193
           ++ AA DE     ++ +              G   Y  GE TA LE++EG  + +PRL+P
Sbjct: 214 AIDAAADELPVVPVVVT--------------GPDEYRAGEPTAALEAIEGVDRTEPRLQP 259

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P PA  GLYG PT ++   + A V    R   +   G  R+    T+L +++G V  P T
Sbjct: 260 PTPAEYGLYGRPTVIHTPRTFARV----RLALADPEGTDRDAASTTRLLTVTGDVAAPAT 315

Query: 254 VE---------ESMSITFDELIEKHC-GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +E            ++  +   +  C GG+ GG    L V                    
Sbjct: 316 IEVGSDARLSTARNAVELEGSFKMACVGGVFGGLTRTLDV-------------------- 355

Query: 304 DYDGLKEMGSGLGTAAVIVM--DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           +    +   +GLGT  V+ +  D    +  A  R + F    + G+C P REGT  +  +
Sbjct: 356 ESTAAELTAAGLGTEGVVELLNDERCAVATAGER-ARFASEANSGRCVPGREGTVQLTEL 414

Query: 362 MERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  + +G    A+ RE+  +   S N      C LG  A  P+   +  F    E   D
Sbjct: 415 LRAVYRGSFDRAKIRELGRVMSRSSN------CLLGAHAPRPVLTAMDEFESSFEAHAD 467


>gi|55376869|ref|YP_134720.1| putative NADH dehydrogenase I, F subunit [Haloarcula marismortui
           ATCC 43049]
 gi|55229594|gb|AAV45014.1| putative NADH dehydrogenase I, F subunit [Haloarcula marismortui
           ATCC 43049]
          Length = 507

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 147/352 (41%), Gaps = 48/352 (13%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +V NA+++      D  ++   P  +++G    +  + A  A +YV       +  L+ A
Sbjct: 182 VVCNANDASDLPTGDDTLLSGAPMAVLDGIAAVAEYVDAGDAVVYVNESQTDVQADLREA 241

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG-KKGQPRLKPPFPAN 198
           +D   A+  L    +L          G   +  GE TA LE+LEG  + +PRL+PP PA 
Sbjct: 242 ID--AAADTLPVVPQL--------VAGPDEFRAGEPTAALEALEGADRIEPRLQPPSPAK 291

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GLYG PT V+   + A V   +    S  +      + GT++ +++G V    TVE   
Sbjct: 292 RGLYGRPTVVHTPRTFAQVQQAVADPGSVDADAA---DPGTRIVAVAGDVADSATVELRS 348

Query: 259 S---------ITFDELIEKHC-GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
           S         +  D   +  C GG+ GG    L + P   S        +R A       
Sbjct: 349 SASLAAVRKAVEMDGSFKMACVGGVLGGVTRSLDMAPTAQS--------LRAA------- 393

Query: 309 KEMGSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
                GLGT  V+ + D     ++ + + + F   E+ G+C P REGT  +  ++  +  
Sbjct: 394 -----GLGTNGVVELFDTGRCTVETVGKRARFASMENSGRCVPGREGTKQLAELLRDIYD 448

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           G     E D + E+S+ +   + C  G  A  P+   I  F P      D +
Sbjct: 449 G---SFENDKIRELSRVMRQSSNCQTGAHAPRPVTTAIDEFEPEFRAHTDGH 497


>gi|313127332|ref|YP_004037602.1| NADH dehydrogenase subunit f [Halogeometricum borinquense DSM
           11551]
 gi|312293697|gb|ADQ68157.1| NADH dehydrogenase subunit F [Halogeometricum borinquense DSM
           11551]
          Length = 513

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 162/393 (41%), Gaps = 64/393 (16%)

Query: 41  DWIINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           + +  E+   GL  RGRG A     +   +     +D    LVVNA++++     D  ++
Sbjct: 147 ESVCTEIHRIGLLGRGRGDARADRPVAEGWATARKTDGDTVLVVNANDADERNRTDSTLV 206

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVR-GEFIRERESLQAAVDECYASGLLGSNSKLGY 157
             +   +++  +  +  + A    +Y + G    ER S  A            S  +  Y
Sbjct: 207 EGDAGGVVDAAMAVAHLVEAEDVIMYAQTGSMAAERLSAAA------------SRYRDEY 254

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                V  G   YI GE T  LESLEG  + + RL+PP P   GLYG PT ++   ++  
Sbjct: 255 GDAPQVAVGPERYIAGEPTMALESLEGNDRLEARLRPPGPETHGLYGRPTVIHTPRTLLQ 314

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-------------SITFD 263
           V   + R   + +    + + GT++ +++G V+ P TVE +              + T  
Sbjct: 315 VREAILRPEEFDAD---DADPGTRVVTVTGDVDSPATVELTTGAPLRAAAAAVDRTETKM 371

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
            ++    GG+    D+ L       S P L                  G+ LGT  V+ +
Sbjct: 372 AIVGGQFGGVTRHLDHTL-------SAPAL-----------------SGANLGTEGVVEL 407

Query: 324 ---DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
              DR    +  +   + F   E+CG+C PCREGT  +  ++  +  G     + D L E
Sbjct: 408 FGDDRCA--LATVGSRARFASEENCGRCVPCREGTTQLTDLLRDIYAG---DYDDDTLRE 462

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +++ +   + C  G +AA  ++  +  F    E
Sbjct: 463 LTRTMRNTSTCDFGRSAARTVETAMAAFEAEFE 495


>gi|269125013|ref|YP_003298383.1| NADH dehydrogenase (quinone) [Thermomonospora curvata DSM 43183]
 gi|268309971|gb|ACY96345.1| NADH dehydrogenase (quinone) [Thermomonospora curvata DSM 43183]
          Length = 505

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 161/380 (42%), Gaps = 52/380 (13%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP----------------------H 78
           + ++   +A  +RGRGGA F    K   + K    RP                       
Sbjct: 42  EELLKITEAVDIRGRGGAAFPFARKLMAVAKQVG-RPGDVDDFLLPGEEDDHRGRRQKRA 100

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            +VVN  E EPG+ KD+ ++   PH +++G  IA+ A+G     I +  E      S++A
Sbjct: 101 VVVVNGSEGEPGSKKDKVLLTRNPHLVLDGAQIAATALGTRDIVIAIEDET--AARSMRA 158

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+ E           ++  +V  +       +I GE  A++ ++ G+   P  +    A 
Sbjct: 159 AIVE----------RRMPAEVVRLPER----FISGESGAVIRAINGETPIPPGRKVRAAE 204

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            G+ G PT ++N E+ A +  ++  G   Y+  G ++  GT L ++ G     C +   +
Sbjct: 205 SGVDGRPTLLSNTETFAQLAVLVSLGPDLYASVGTDSEPGTTLLTVGGTTVVECPLGTPL 264

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
           +  F +       G++ G      V+ GG     +     R AI+   G + +G  LG  
Sbjct: 265 ASVFAQC------GVQPGQ----GVLVGGYHGEWITPEAARTAIVSRAGFQAVGGSLGAG 314

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            ++ +   T  ++ + R++ +   +S GQC PCR G   + R +E LV G       +L+
Sbjct: 315 IILPLPEGTCPLREVARIASYMAGQSAGQCGPCRLGLPDLYRSLEALVDGSGSP---ELV 371

Query: 379 YEVSKNIEGRTICALGDAAA 398
              +    GR  C+  D  A
Sbjct: 372 RRAAGIGRGRGACSHPDGTA 391


>gi|119718053|ref|YP_925018.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Nocardioides sp. JS614]
 gi|119538714|gb|ABL83331.1| NADH dehydrogenase subunit F [Nocardioides sp. JS614]
          Length = 412

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 151/367 (41%), Gaps = 50/367 (13%)

Query: 54  GRGGAGFSTGMKWSFMPKVCSDRPH-----YLVVNADESEPGTCKDRDIMRHEPHTLIEG 108
           GRGGA F   +K     +  +DR        +VVN  E EP + KD  +    PH +++G
Sbjct: 59  GRGGAAFPFEVKL----RTAADRSRQGRRPVVVVNLSEGEPASAKDSALALTRPHLVLDG 114

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAG 168
            V  ++A+GA    + V  E      +++AA+ E           +L   +    H   G
Sbjct: 115 AVATAYALGARELHVVVPQERPLVGTAIRAALAE--------RRDRLRTHL----HTAQG 162

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
            ++ G+  A+LE + G+   P       A  G  G PT ++N E+ A V  ++  G   Y
Sbjct: 163 RFVAGQARAVLELMAGRPNLPVTAWSPEAVAGHRGRPTLLSNAETWAQVGRLVLAGEERY 222

Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH-------CGGIRGGWDNLL 281
           +  G  +  GT L ++S   +    VE  +   + +++ +         GG  G W    
Sbjct: 223 AALGSADEPGTTLLTLSAATS--TVVEVELGSPWRDVLPEAWAGRSLLVGGFHGAWVPWA 280

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
            ++ G  SV               D ++   + LG A V+V  R   +     R+  +  
Sbjct: 281 TLVAGRVSV---------------DAMRAAETPLG-AGVVVAPRGCPVAFTA-RVVDYLA 323

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            +S  +C PC  G   + R ++ +V G      ++ L  +   + GR  CA  D  A  +
Sbjct: 324 AQSARRCGPCLNGLPALARAVQEVVDGAGHPERVEGLAAL---VTGRGACAHPDGTARLV 380

Query: 402 QGLIKNF 408
           + ++  F
Sbjct: 381 RSMLATF 387


>gi|302869187|ref|YP_003837824.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Micromonospora aurantiaca ATCC 27029]
 gi|315504336|ref|YP_004083223.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Micromonospora sp. L5]
 gi|302572046|gb|ADL48248.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Micromonospora aurantiaca ATCC 27029]
 gi|315410955|gb|ADU09072.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Micromonospora sp. L5]
          Length = 488

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 157/367 (42%), Gaps = 42/367 (11%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIMRH 100
           ++   +A  L+G+GGAGF    K   + + C   D    +VVNA E EP + KD+ ++  
Sbjct: 47  LLRLAEAIDLKGKGGAGFPFARKLRAVLESCERQDLGAVVVVNATEGEPASWKDKVLLTR 106

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            PH +++G  +A+FA+ A    I V  + +  R SL  A+ E            +   + 
Sbjct: 107 APHLILDGAALAAFALDAEEIVIGVADDDV-GRPSLTEALQE--------RRMPVPTTIV 157

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
            + H     +I GE  AL+  + G    P       ++ G+ G PT ++N E+ + +   
Sbjct: 158 TVPHR----FISGEGGALVNGINGLPHIPPGTKKRSSDSGVGGLPTLLSNAETYSQLAVA 213

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK---------HCG 271
            R G   Y+  G ++  GT L +++G    P  VE +      E+++            G
Sbjct: 214 ARIGPYEYAALGTDDEPGTVLLTVTGSAKRPAVVECAAGTPLREILDLCEVPPGPGILMG 273

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G  G W               + A     A +   GL  +G  LG   ++ +   T  + 
Sbjct: 274 GYHGKW---------------ITAAAAERAEVSRKGLTAVGGTLGAGIIVPLGADTCPLG 318

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
              ++  +   ES GQC PC+ G   + R ++  V G A    ++L+   + +++GR  C
Sbjct: 319 EAAQVVRYLAGESAGQCGPCKMGLPDLARSVDLAVSGSAP---VELVRAAAGDVKGRGAC 375

Query: 392 ALGDAAA 398
           +  D  A
Sbjct: 376 SHPDGTA 382


>gi|169335144|ref|ZP_02862337.1| hypothetical protein ANASTE_01551 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257882|gb|EDS71848.1| hypothetical protein ANASTE_01551 [Anaerofustis stercorihominis DSM
           17244]
          Length = 357

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 158/391 (40%), Gaps = 69/391 (17%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR-PH 78
           L D ++ G ++   K++    D +I+ +K + L  R             + ++C+DR   
Sbjct: 29  LDDYVAFGGYEASSKVVNNEVD-VISILKDANLVARKK-----------LNELCADRWSG 76

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
              V  +  +P    D  +    PH ++E  +I      A    I V  E    R  L  
Sbjct: 77  AETVVCETEDPMATLDLKVQTEAPHVIVEAMIIFMHVNNAKKGVIVVNDELAYNR--LNK 134

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           AV +   +GL         D DIIV                 S++G K   +L     AN
Sbjct: 135 AVTDAKNAGL--------NDKDIIVSK--------------VSIDGLKENAQL----LAN 168

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           V              +A+V    +   +          +G K  +I G V  P   E   
Sbjct: 169 V--------------VAIVQNSYKPAPA----------KGLKGVAIGGKVKNPGVYEIED 204

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
             T+ +LIE+  GG  G    +    P G  +    +  +    +++  L   G   GTA
Sbjct: 205 GTTYRKLIEEIAGGATGKVKAIKVGAPYGEYL----SSDILDEKINFMSLMMNGMVRGTA 260

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            ++V+D STD+ K I     F  + SCG+C PC+ GT  M  +++ +VKG A K   +++
Sbjct: 261 LIVVLDESTDMAKEISDYLGFLLNVSCGKCFPCKVGTKRMDEMVKEVVKGNATKENYNMI 320

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ N+   T+C +G   A P+   ++NFR
Sbjct: 321 KSIAVNMNIGTLCPIGQKGAVPVLTALENFR 351


>gi|225405649|ref|ZP_03760838.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme
           DSM 15981]
 gi|225042823|gb|EEG53069.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme
           DSM 15981]
          Length = 218

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 2/141 (1%)

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A   GG S  C+PA      I DYD L  +GS +G+  +IVMD    ++        F  
Sbjct: 14  AAQTGGPSGGCIPAEHFDIPI-DYDNLLAIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTV 72

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
            ESCG+CT CR GT  M+ ++E++ KG AQ  ++D L E+   ++  ++C LG  A  P+
Sbjct: 73  EESCGKCTACRIGTKRMLEILEKITKGTAQMEDLDKLEELCHYVKANSLCGLGQTAPNPV 132

Query: 402 QGLIKNFRPLIEERIDQYHRC 422
              +  FR   E  I +  RC
Sbjct: 133 LSTLHFFRDEYEAHIKE-KRC 152


>gi|284167379|ref|YP_003405657.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
 gi|284017034|gb|ADB62984.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
          Length = 507

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 142/344 (41%), Gaps = 54/344 (15%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV-RGEFIRERESLQA 138
           +VVNA+E +     DR ++   P  +++G    +  +GA  A +Y+   E   +R   QA
Sbjct: 182 IVVNANEPDDRQQADRTLLAGAPIAVLDGVAAVAEYVGAEDAVVYLNEHETTLQRHVRQA 241

Query: 139 A---VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG-KKGQPRLKPP 194
           A    DE      +                    Y  G  TA LE++EG  + +PRL+PP
Sbjct: 242 ANAIEDELPVVPDVVVGPD--------------EYRAGAPTAALEAMEGADRIEPRLQPP 287

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            PA  GLYG PT V+   + A V   +    S  +      + GT+L +++G V  P  V
Sbjct: 288 TPAEYGLYGRPTIVHTPRTFAQVRQAVHAPESIDADA---PDPGTRLVTVTGDVETPAIV 344

Query: 255 EESMSITFDELIEKH----------CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           E   S T +  ++             GG+ GG+   L V P   S        +  A + 
Sbjct: 345 ELDSSATLETTLDAVSMEGSLKMACVGGVFGGFTTDLGVAPTARS--------LTAADLG 396

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
            DG+ E+ S          DR   +  A  R + F    + G+C P REGT  +  ++  
Sbjct: 397 TDGVVELLS----------DRRCAVATAGER-AQFASEANSGRCVPGREGTKQLTELLRD 445

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +  G  +    D + E+ + +   + C +G  A  P+   +  F
Sbjct: 446 VYAGAFRS---DGIRELGRVMARSSNCQIGAHAPRPVTTAMDEF 486


>gi|167945090|ref|ZP_02532164.1| NADH dehydrogenase (quinone) [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 96

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
           ++G  +++ V   AG YI GEETA +ES+EG    PR KPPFPA  G++G PT VNN E+
Sbjct: 4   QMGKPIELSVMESAGHYIGGEETAAIESVEGNFPFPRGKPPFPAESGVHGYPTLVNNTET 63

Query: 214 IAVVPTILRRGASWYSGFG-RENNRGTKLF 242
           +A VP I+R GA W+   G R  +R   L 
Sbjct: 64  LANVPHIMRHGADWFQALGDRRGHRDQDLL 93


>gi|284167343|ref|YP_003405621.1| NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
           protein [Haloterrigena turkmenica DSM 5511]
 gi|284016998|gb|ADB62948.1| NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
           protein [Haloterrigena turkmenica DSM 5511]
          Length = 495

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 145/325 (44%), Gaps = 44/325 (13%)

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           G+  D  ++   P  +++G  + +  + A    +Y   E     ++  +AVD        
Sbjct: 186 GSPADTLLLSSAPFEVLDGASVLANTVAADRIVVYASSEDDTAVKTASSAVD-------- 237

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTV 208
            +       ++++   G   Y   E T  +E++EG  + + RL+PP P  +GL G PT V
Sbjct: 238 -TYPDPAAPMEVVT--GPKEYRAAEPTMAIEAIEGNHRLEARLRPPGPERLGLDGRPTLV 294

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           +   ++A +   LR G              T++ ++ G V+   TVE S +    EL+  
Sbjct: 295 HTPRTLAHLAVGLREGIEEQ----------TRVMTVRGDVDAVATVELSETRKLSELV-- 342

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD---GLKEMGSG-LGTAAVI-VM 323
           +  G+ G +              C+  G+  G   D D   GL+ + +  LGT  ++ V+
Sbjct: 343 NTVGVDGSF-----------KAACV-GGRFGGITRDLDVEIGLEALDNADLGTDGIVDVL 390

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
             +  +++ + + + F   E+CG+C PCREGT  +  ++  +  G    + ID   E+ +
Sbjct: 391 SDAQCLVEFVGQRASFAAEENCGRCVPCREGTAQLTLLLRNVYDGDFDAQAID---ELGR 447

Query: 384 NIEGRTICALGDAAAWPIQGLIKNF 408
            +   +ICA G+ A  P +  I+ F
Sbjct: 448 VMASSSICAFGERAGRPARTAIEAF 472


>gi|300709462|ref|YP_003735276.1| putative NADH dehydrogenase I, F subunit [Halalkalicoccus jeotgali
           B3]
 gi|299123145|gb|ADJ13484.1| putative NADH dehydrogenase I, F subunit [Halalkalicoccus jeotgali
           B3]
          Length = 522

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 162/370 (43%), Gaps = 32/370 (8%)

Query: 43  IINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           +  +V A GL  RGRG A     +  ++     ++    +VVN +E +P    D+ +++ 
Sbjct: 149 LCEDVDALGLLGRGRGDARHDAPLASAWEATREAEGEPVVVVNGNEPDPAADADQLLLKS 208

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            P  +++G +  + A+GA    +Y         E+   A++ C  +     +  LG  V 
Sbjct: 209 APVAVLDGALTVAAAVGATDVVVYAN-------EADDLALERCETAAD-AIDDALGATVQ 260

Query: 161 IIVHHGAGAYICGEETALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           I    G   Y  GE T  LESLEG  + + R  PP P   GL+G PT ++   ++A + T
Sbjct: 261 IA--SGPDEYRAGEPTMALESLEGADRIEARRTPPGPEEHGLFGRPTAIHTPRTLAQLRT 318

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            L    S+ +    + + GT++ ++    +   TVE S   +    +     G     D 
Sbjct: 319 ALLSPESFDAD---DADPGTRIVTVVDDADR-ATVELSTGSSLQTAL-----GAVPAEDF 369

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT-AAVIVMDRSTDIIKAIWRLSV 338
            LA + G     C   G  R      +      + LGT  AV + D +   +    + + 
Sbjct: 370 KLACVGG-----CF-GGFTRTLDTPANAQSLDSANLGTNGAVELFDGTRCTVALAGKRAR 423

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F +  +CG+C PCREG+  ++ ++  +  G   + +   + E+++ +   + C  G AA+
Sbjct: 424 FAREANCGRCVPCREGSKQLVALLREVYDG---EYDSGSIRELTRVMRRTSTCYFGRAAS 480

Query: 399 WPIQGLIKNF 408
            P+   +  F
Sbjct: 481 RPVTTAMDAF 490


>gi|156310284|ref|XP_001617721.1| hypothetical protein NEMVEDRAFT_v1g156896 [Nematostella
          vectensis]
 gi|156195451|gb|EDO25621.1| predicted protein [Nematostella vectensis]
          Length = 73

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 49/73 (67%)

Query: 4  DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
          D+DRIFTNLYG     L  ++SRG W    +I+ KG +WI+ E+  SGLRGRGGAGF TG
Sbjct: 1  DEDRIFTNLYGRHDWKLKGAISRGDWYKTKEIILKGPEWILKEITTSGLRGRGGAGFPTG 60

Query: 64 MKWSFMPKVCSDR 76
          MKW FM K    R
Sbjct: 61 MKWGFMNKPSDGR 73


>gi|300787792|ref|YP_003768083.1| respiratory-chain NADH dehydrogenase-related protein [Amycolatopsis
           mediterranei U32]
 gi|299797306|gb|ADJ47681.1| respiratory-chain NADH dehydrogenase-related protein [Amycolatopsis
           mediterranei U32]
          Length = 376

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 161/375 (42%), Gaps = 50/375 (13%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           + GRD +I  V+A+ LRGRGGAGF T +K     +    +   +V N  E +P + KD  
Sbjct: 29  DDGRDRLIEAVEAADLRGRGGAGFPTAVKL----RAARSKRSIVVANGCEGDPLSRKDVA 84

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++   PH +++G  +A+ AIGA  A + V               D     G+  + ++  
Sbjct: 85  LLTLSPHLVLDGLQLAAHAIGAAEAVLCVHA-------------DSPALPGVAAALAERE 131

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + V      Y+  EETAL+  L     +P  K P PA  G+ G PT V+NVE++A 
Sbjct: 132 DRAPVRVAQVPRRYVASEETALVRYLTSGDARPLGKRPRPAERGVRGRPTLVSNVETLAQ 191

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           + +++  G + Y    R +   T+L +++G V  P  VE +   +  + +        G 
Sbjct: 192 LASVVLLGPNHY----RASR--TELVTVTGAVRRPGVVEVAAGTSLADALAAAG----GE 241

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG--LKEMGSGL-GTAAVIVMDRSTDIIKAI 333
            + + AV+ GG                 Y G    E+G G+ G AAV  +      ++  
Sbjct: 242 AEPVQAVLAGG-----------------YGGTWTAELGGGVPGIAAVHALPVRACGLEYT 284

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            ++  F   ES  QC PC  G   +      LV+G      +     +   + GR  CA 
Sbjct: 285 AKVLAFLAAESARQCGPCTFGLPSIAADFAELVRGGPAAPRLARRLPL---LTGRGACAH 341

Query: 394 GDAAAWPIQGLIKNF 408
            D AA      ++ F
Sbjct: 342 PDGAARLAASALQVF 356


>gi|115702485|ref|XP_789599.2| PREDICTED: similar to mitochondrial complex I subunit NDUFV1
           [Strongylocentrotus purpuratus]
 gi|115941567|ref|XP_001184929.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV1
           [Strongylocentrotus purpuratus]
          Length = 319

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 49/69 (71%)

Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
           ++GF  E N+ TKLF+ISG+VN PCTVEES S      IEKH GG+ GGW++LL V PGG
Sbjct: 244 FAGFRCERNQATKLFNISGNVNTPCTVEESKSTPLKFFIEKHAGGVEGGWNDLLTVNPGG 303

Query: 288 SSVPCLPAG 296
           SS   +P G
Sbjct: 304 SSTSMIPKG 312



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 35/43 (81%)

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288
           G+VN PCTVEES SI    LIEKH GG+ GGWDNLLAVIPGGS
Sbjct: 23  GNVNTPCTVEESKSIPLKFLIEKHAGGVEGGWDNLLAVIPGGS 65



 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 37/48 (77%)

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
           +VN P TVEES SI    LIEKH GG+ GGWDNLLAVIPGGSS+  +P
Sbjct: 67  NVNTPFTVEESKSIPLKFLIEKHAGGVEGGWDNLLAVIPGGSSISMIP 114



 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 38/59 (64%)

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
           +R +K     G+VN PCTVEES S     LIEKH GG+ GGWDNLL V  GGSS   +P
Sbjct: 174 SRKSKKPHKKGNVNTPCTVEESKSTPLKFLIEKHAGGVEGGWDNLLTVNSGGSSTSMIP 232


>gi|302538138|ref|ZP_07290480.1| oxidoreductase [Streptomyces sp. C]
 gi|302447033|gb|EFL18849.1| oxidoreductase [Streptomyces sp. C]
          Length = 369

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 135/326 (41%), Gaps = 27/326 (8%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIM 98
           D +++      LRGRGGAGF    K   +     +R  P  +VVN  E EP   KD+ ++
Sbjct: 66  DELVDLAADIDLRGRGGAGFPFARKLRAVIGSAREREGPTAVVVNGSEGEPSCLKDKALL 125

Query: 99  RHEPH-TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
            H PH  L    + A+            R +  R   S++ AV E    G     ++L  
Sbjct: 126 LHAPHLVLDGALLAAAAVGAEEVVVAVTRADVER---SVRDAVAERGPGGRRVRVARLPE 182

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
                       ++ GE TA++  L G    P  +    +  GL G PT ++N E+ A +
Sbjct: 183 R-----------FVTGEGTAMVGGLNGGAALPSGRRVRTSERGLGGVPTLLSNTETYAQL 231

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
               R GA  Y   G  +  GT L +++G      TV E+ + T    +   C G R G 
Sbjct: 232 AVAARMGAPDYRAAGLPSEPGTVLLTVAGQ-----TVVETPTGTSLAYVLDLC-GTRTGQ 285

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                V+ GG     L  G  R A +    L   G+ LG  AV+ +   T     + R++
Sbjct: 286 ----GVLVGGYHGRWLDPGAARSADVSRGSLSAFGAVLGAGAVLPLPEDTCPAGEVARVT 341

Query: 338 VFYKHESCGQCTPCREGTGWMMRVME 363
            +   ES GQC PC  G   +  V+E
Sbjct: 342 RWMAKESAGQCGPCVRGLPGLADVLE 367


>gi|331694618|ref|YP_004330857.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
 gi|326949307|gb|AEA23004.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
          Length = 424

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 8/242 (3%)

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
           Y+  EE+AL+  L G+   P   PP PA  G+ G PT V+NVE++A +  I   G  W+ 
Sbjct: 161 YVASEESALVGYLSGRPALPTTTPPRPAERGVAGRPTLVDNVETLAHLALIAHHGPDWFR 220

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-WDNLLAVIPGGS 288
             G  +  GT L +  G +  P   E     T   ++E     + GG  + + A++ GG 
Sbjct: 221 RAGTSDLPGTLLVTTGGALRDPGVDEVPGGTTVQAVLE-----LAGGPAEPVQAILSGGY 275

Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348
               L    +    + ++ ++  GS LG   ++ +      +     L      ES GQC
Sbjct: 276 GGAWLGIDAL-ATPLTHEAMRSAGSALGVPTLLALPTRVCGLGQTAHLLDHLAAESAGQC 334

Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDL-LYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
            PCR G   + + +  +V G     +    L      ++GR  CA  D +   ++  ++ 
Sbjct: 335 GPCRFGLPAIAQDLRAIVHGSPGAPDAHARLQRRLGTVDGRGACAHPDGSVRLVRSALRV 394

Query: 408 FR 409
           FR
Sbjct: 395 FR 396


>gi|330884138|gb|EGH18287.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 82

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 53/80 (66%)

Query: 57  GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           GAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M   PH L+EG +I++ A+
Sbjct: 1   GAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARAL 60

Query: 117 GAHCAFIYVRGEFIRERESL 136
            A+  +I++RGE++   + L
Sbjct: 61  KAYRGYIFLRGEYVTAAKHL 80


>gi|225620388|ref|YP_002721645.1| NADH dehydrogenase [Brachyspira hyodysenteriae WA1]
 gi|225215207|gb|ACN83941.1| DH dehydrogenase [Brachyspira hyodysenteriae WA1]
          Length = 387

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/348 (19%), Positives = 141/348 (40%), Gaps = 33/348 (9%)

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +  ++++NA   +    KD+ ++R+ PH +++G V  +  +      I ++  ++ ER+ 
Sbjct: 64  KEDFILINAASFDYLVFKDKFLLRNNPHLILDGSVFIAKILNIKRIDIVLKDYYLEERDI 123

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           +  ++ E         ++   YD++I ++     Y               K   R+ P F
Sbjct: 124 ILKSIVE-------AEDANFVYDIEINIYDEYAYY--------------NKYNIRITPSF 162

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
             N         + ++E+I+ +  +   G   +  +G    +G+ + SI+G +  P   E
Sbjct: 163 LEN------KKYIFDLETISQIAYLAHIGGFTFKDYGNGEYKGSNILSITGDIINPNLYE 216

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M      ++ K  GG    +  +  V   G   P +     +   +DY+    +   +
Sbjct: 217 FEMHTPLRNIV-KAAGGTVKEY-TIKCVFTNGFLNPPIDFETFQKMTLDYECFDSLNMKI 274

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G   +  +     II+ + ++  F K  SCG+C+PC  G       + R++ G +   + 
Sbjct: 275 GNGGICFIQEDRCIIRVVVKIIQFGKSISCGKCSPCHNGFDLCEYYINRMLLGNSNFDDY 334

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP----LIEERIDQY 419
             L E  + I+    C    + A  I   ++ FR     LIE +I  Y
Sbjct: 335 SNLKEAVEMIKIGASCLYIRSLANCILSTMEMFRDEFVYLIENKITLY 382


>gi|302559184|ref|ZP_07311526.1| LOW QUALITY PROTEIN: NADH-ubiquinone dehydrogenase chain F
           [Streptomyces griseoflavus Tu4000]
 gi|302476802|gb|EFL39895.1| LOW QUALITY PROTEIN: NADH-ubiquinone dehydrogenase chain F
           [Streptomyces griseoflavus Tu4000]
          Length = 328

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 10/190 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  V+A+GL GRGGAGF T  K   +          +VVNA ESEP + KD+ ++   P
Sbjct: 63  LVEAVEAAGLTGRGGAGFPTARKLRAVAGRRRR--AVVVVNAMESEPASRKDQFLLAVAP 120

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H +++G V+A+ A+GA    + +  +   +   + AA+DE   + L              
Sbjct: 121 HLVLDGAVLAASAVGADTVHVCLPRDRPAQYRRMDAALDERRRARLDRVRLL-------- 172

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
            H     Y+  E TAL+  L G   +P+  PP     G+   PT V+N E++A +  I R
Sbjct: 173 AHALPHTYVSSESTALVHWLNGGPARPQGGPPGNRERGVDRRPTLVSNAETLAHLALIAR 232

Query: 223 RGASWYSGFG 232
            G  W+   G
Sbjct: 233 HGPGWFRRLG 242


>gi|291436112|ref|ZP_06575502.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
 gi|291339007|gb|EFE65963.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
          Length = 306

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           SL D  + G +  + +    G   +I EV  SGL GRGGA F TG KW        DRPH
Sbjct: 215 SLDDYRAHGGYAALRRAFALGPAGVIREVTDSGLVGRGGAAFPTGRKWQATASR-PDRPH 273

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEG 108
           YLV NADESEPGT KDR IM  +P+   +G
Sbjct: 274 YLVCNADESEPGTFKDRVIMEGDPYAWRDG 303


>gi|320010870|gb|ADW05720.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Streptomyces flavogriseus ATCC 33331]
          Length = 524

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 156/359 (43%), Gaps = 16/359 (4%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           LRGRGGAGF  G K   + K    R     +V+N  E EP   KD  ++   PH +++G 
Sbjct: 58  LRGRGGAGFPFGKKLRAVAKASIRRGVRPVVVINGSEGEPACRKDTVLLNRAPHLILDGA 117

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++A+ A+GA    + V       R S + +V    A    G + + G  +   V      
Sbjct: 118 LLAAEALGARTLVVAV------TRNSTEMSVRSALAE--RGLSDRRGQHLRARVVRTPER 169

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + GE +A++ ++ G    P  +    A  G+ G PT ++N E+ A +    R G   Y 
Sbjct: 170 MVSGEASAVIRAVNGGPALPPGRRERAAESGVAGAPTLLSNAETYAQLAVAARLGPRRYG 229

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G  +  GT L ++SG V  P  VE    +    +++     + G       V+ GG  
Sbjct: 230 HTGLADEPGTVLLTVSGAVARPMVVEVPTGVPLRYVLQ-----LAGAPPLPQGVLTGGYH 284

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              + +  +  A++    L  +G  LG  AV+ +   T  I    R++ +   E+ GQC 
Sbjct: 285 GNWIDSTALHDAVVSRASLAAVGGALGAGAVLPIGPETCPIGESLRIANWLAAETAGQCG 344

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           PC+ G       +  ++ G      ++ L EV++ ++GR  C   D +A  +   +  F
Sbjct: 345 PCKLGLPAAAGGLSDVLNG-GGPAALEALREVTQAVKGRGACKHPDGSARFLSSTLSAF 402


>gi|167830055|ref|ZP_02461526.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 9]
          Length = 251

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 1/111 (0%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 117 SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 175

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+
Sbjct: 176 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATVGHIYVRSEY 226


>gi|167720687|ref|ZP_02403923.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           DM98]
          Length = 210

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 1/111 (0%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S+ D ++ G  + +   L          +  SGLRGRGGA F  G+KW  + +  + +  
Sbjct: 97  SIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAFPAGVKWRTVREAAAAQ-K 155

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
           Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA    IYVR E+
Sbjct: 156 YVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATIGHIYVRSEY 206


>gi|227529420|ref|ZP_03959469.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540]
 gi|227350663|gb|EEJ40954.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540]
          Length = 72

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLES 181
           I++RGE+I    +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ S
Sbjct: 1   IFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINS 60

Query: 182 LEGKKGQPRLKP 193
           LEG++  PR KP
Sbjct: 61  LEGRRANPRSKP 72


>gi|115639273|ref|XP_001201081.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa, partial [Strongylocentrotus purpuratus]
 gi|115654865|ref|XP_798823.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa, partial [Strongylocentrotus purpuratus]
          Length = 62

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 42/56 (75%)

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
           I R GA W++GFGRE N+G KLF+ISG+VN PCT+EES S     LIEKH GG+ G
Sbjct: 2   ICRNGALWFAGFGRERNQGIKLFNISGNVNTPCTMEESKSTPLKFLIEKHAGGVEG 57


>gi|238683703|gb|ACR54130.1| NADH dehydrogenase flavoprotein 1 [Palaemonetes varians]
          Length = 59

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/50 (66%), Positives = 41/50 (82%)

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           A   EID L+EVSK IEG TICALGD AAWP+QGLI++FRP++EER+  +
Sbjct: 1   ASPDEIDALWEVSKQIEGHTICALGDGAAWPVQGLIRHFRPVLEERMATF 50


>gi|213025627|ref|ZP_03340074.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 112

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 1/110 (0%)

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           ++ + + GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  
Sbjct: 1   FESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRA 60

Query: 365 LVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
           L +G  Q  +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E
Sbjct: 61  LERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 110


>gi|296126170|ref|YP_003633422.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Brachyspira murdochii DSM 12563]
 gi|296017986|gb|ADG71223.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Brachyspira murdochii DSM 12563]
          Length = 386

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/344 (20%), Positives = 134/344 (38%), Gaps = 34/344 (9%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           ++VNA   +    KDR ++++ PH +++G +  +  +      I ++  +  E++ L  A
Sbjct: 68  IIVNAASFDYLVFKDRFLIKNNPHLILDGALYLAKILNIKIINIVLKDYYSEEKKILIKA 127

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           + E   +G         YD+ I ++     Y    E     S E KK             
Sbjct: 128 IAEAEDAGF-------AYDIKINIYDEQTYYSENHERITPLSFENKK------------- 167

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
                   + ++E+I  +  +   G   +  +G   N+GT + S+SG +      E  M 
Sbjct: 168 -------YIFDLETITQITYLAHIGEFSFKNYGAYENKGTYILSMSGDIINTNIYEFEMY 220

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
                +I + CG I+    ++  V   G   P +     +   +DY+        +G   
Sbjct: 221 TPIKNII-RACGTIKDY--SIKCVFTNGFLNPPIDFISFQNMTLDYECFNSFNMNIGNGG 277

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +  +     +++ I ++  F K  SCG+C PC  G       + +++ G +   +   L 
Sbjct: 278 ICFIREDRCMVRVILKIVQFAKSVSCGKCMPCHYGFDLCEYYINKMLLGNSDNEDYTNLK 337

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRP----LIEERIDQY 419
           E  + I   +IC      +  I   I  FR     LIE ++  Y
Sbjct: 338 EAIEMINTGSICLYIKKLSHCILSSIDMFRDEFLYLIENKVALY 381


>gi|238609524|ref|XP_002397505.1| hypothetical protein MPER_02055 [Moniliophthora perniciosa FA553]
 gi|215472091|gb|EEB98435.1| hypothetical protein MPER_02055 [Moniliophthora perniciosa FA553]
          Length = 75

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 39/47 (82%)

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           +L E++K +EGRTICALGDAAAWPIQGL+++FRP +E RI ++   N
Sbjct: 1   MLLELTKQVEGRTICALGDAAAWPIQGLMRHFRPEVEARIAKFREEN 47


>gi|325523852|gb|EGD02080.1| NADH dehydrogenase (quinone) [Burkholderia sp. TJI49]
          Length = 155

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 2/155 (1%)

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I  RGA++Y  +G   +RGT  F ++G++ +   VE +  +T  EL+ +  GG   G   
Sbjct: 1   IFARGAAFYRDYGMGRSRGTLPFQLAGNIRHGGLVELAFGVTLRELLFEFGGGTASGRPA 60

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A + GG     LP  Q     +DY+    +G+ +G   +++ D ++++         F
Sbjct: 61  RAAQV-GGPLGTYLPEHQWD-VPLDYEAYAAIGAVVGHGGIVLHDDTSNLAALAEYAMKF 118

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
              ESCG+CTPCR G+   +  + R+ +G   +R+
Sbjct: 119 CAIESCGKCTPCRIGSTRGVETIARIRQGDTSERQ 153


>gi|77920097|ref|YP_357912.1| pyridine nucleotide-disulfide oxidoreductase [Pelobacter
           carbinolicus DSM 2380]
 gi|77546180|gb|ABA89742.1| pyridine nucleotide-disulfide oxidoreductase [Pelobacter
           carbinolicus DSM 2380]
          Length = 663

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 6/130 (4%)

Query: 302 IMDYDGLKEMGSG------LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
           + ++D + E   G      LG     V D+ T I+ A  +       ESCG+CTPCR GT
Sbjct: 27  LKEFDQMDEFDPGNPVKAFLGANGFFVFDKETSILDAAHQYVATAARESCGKCTPCRVGT 86

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             +   +E L KG      +D +  ++++I+  ++C LG  A  P+  ++++FR   E  
Sbjct: 87  EVLTSKLEALSKGELGADAVDEILTLAEHIKSTSMCGLGQTATDPLIAMLRHFRDEFEVN 146

Query: 416 IDQYHRCNFQ 425
           I +Y     Q
Sbjct: 147 IGRYDETGRQ 156


>gi|297194423|ref|ZP_06911821.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152265|gb|EFH31625.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 269

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 20/244 (8%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           L GRGGAGF  G K   + K    R     +VVN  E EP   KD  ++   PH +++G 
Sbjct: 24  LTGRGGAGFPFGKKLRAVAKSAIRRGIRPVVVVNGSEGEPACRKDTVLLNRAPHLILDGA 83

Query: 110 VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGA 169
           ++A+ A+GA    + V       R S + ++    A    G + + G  +   V      
Sbjct: 84  LLAAEALGARTLVVAV------TRNSTEISMRAALAE--RGLSDRRGQALRARVVRTPER 135

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
            + GE ++++ ++ G    P  +    A  G+ G PT ++N E+ A +    R GA  YS
Sbjct: 136 MVSGEASSVIRAVNGGPALPPGRRVRAAETGVGGAPTLLSNAETFAQLAVAARIGARRYS 195

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH----------CGGIRGGWDN 279
             G ++  GT + +ISG V  P  VE    +    +++             GG  G W +
Sbjct: 196 HTGLDSEPGTVMLTISGAVARPMVVEVPTGVPLRYVLQLAGAPPQPQGVLTGGYHGNWID 255

Query: 280 LLAV 283
             AV
Sbjct: 256 AAAV 259


>gi|295091667|emb|CBK77774.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Clostridium
           cf. saccharolyticum K10]
          Length = 479

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 130/320 (40%), Gaps = 68/320 (21%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++ +++++G+ G GGAGF    K +        R  YL+VNA E EP    DR +M H+ 
Sbjct: 3   LLEQIESAGIVGCGGAGFPAHKKLNC-------RVEYLIVNAAECEPLLRTDRWLMIHKA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++    +A     A   +I ++  +  E  +L AA++E             GY V + 
Sbjct: 56  KEIVTAAALAGSMTEASHIYIALKETYREEAAALTAAIEE------------TGYPVKLF 103

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
                  Y  G+E  ++  + G     R  PP   P +VG                   +
Sbjct: 104 PMR--NFYPAGDEQIMVCDVTG-----RTVPPSGIPLDVG------------------CV 138

Query: 221 LRRGASWYSGFGRENNRGT----KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   A+ Y+ F  E ++G     K  +++G VN PC V   +  +F +     C  + GG
Sbjct: 139 IANTATMYAVF--EASQGKPLTRKYLTVTGAVNEPCIVRAPLGSSFSD-----CLRLAGG 191

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AI 333
                    G S    L  G M G +   +  + +     T+ +IV+   T +I+   A 
Sbjct: 192 T--------GLSRYYVLAGGPMMGKLYSMEEAESLTVTKTTSGLIVLPEDTPLIRRKTAP 243

Query: 334 WRLSVFYKHESCGQCTPCRE 353
             LS+     SC QC+ C +
Sbjct: 244 VSLSLKLAKTSCIQCSYCTQ 263


>gi|302529506|ref|ZP_07281848.1| hypothetical protein SSMG_05888 [Streptomyces sp. AA4]
 gi|302438401|gb|EFL10217.1| hypothetical protein SSMG_05888 [Streptomyces sp. AA4]
          Length = 368

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 108/234 (46%), Gaps = 28/234 (11%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           RD +I+E+  +G+RGRGGAGF    K      V   R   +V N  ES+P + KDR ++ 
Sbjct: 24  RDALIHEIDVAGIRGRGGAGFPAAAKLR---SVAPGR-SIVVANGCESDPFSSKDRALLE 79

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
             PH +++G  +A+ A+GA  A++ +R        S+ AA+ E            +   V
Sbjct: 80  LAPHLVLDGIQVAAHAVGATEAYLCLR----EGNRSVLAALAE--------RRDAVPVKV 127

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
             + H     Y+  EETAL+  L     +P  K P P   GL G PT V NVE++A    
Sbjct: 128 VAVPHR----YVASEETALVHFLGSGDARPTGKFPRPTERGLRGRPTLVQNVETLARFAL 183

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           + R GA  +          T L +++G V  P  +E         ++ +  G +
Sbjct: 184 VARTGADRFV--------PTDLVTVTGAVARPGVMEVPADTPVSAILARAGGSV 229


>gi|46202100|ref|ZP_00053780.2| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
           subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 212

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 13/175 (7%)

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           SISG    P   E    +   +++   CG      D     I G S +   P     G  
Sbjct: 2   SISGDCERPGIYEYPYGVKVSQVLAD-CGA----RDTQACQIAGASGLAIAP--NEFGRR 54

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           + ++ +   GS       ++ D + D+ +     + F+ HESCG CTPCR GT  +   M
Sbjct: 55  IAFEDIPTGGS------FMIFDNTRDMFQVARNFAHFFVHESCGFCTPCRVGTTLLANAM 108

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +++ +G   + +I  ++ V + ++  + C LG  A   +   ++ FRP  E R++
Sbjct: 109 DKIDEGHGGEYDISDIWRVIRTLKTASHCGLGQTAGNAVADTLQKFRPSYELRLN 163


>gi|23014793|ref|ZP_00054592.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 257

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCK 93
           +++ +K SGLRGRGGAGFSTG KW F        P   HY+V NADE EPGT K
Sbjct: 204 VLDAIKESGLRGRGGAGFSTGQKWDFCRAAVGTGPHAAHYVVCNADEGEPGTFK 257


>gi|284118231|ref|ZP_06386764.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829467|gb|EFC33837.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 110

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 51/91 (56%)

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           +T ++    +LS F++ ESCGQC PCR GT  +  +M ++ +G   + ++D L ++   +
Sbjct: 1   ATCMVGQTLKLSTFFREESCGQCPPCRIGTEHLEELMAKIEEGTGTREDLDKLLQICGFV 60

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +G   C L   AA  +Q  ++ FR   EE +
Sbjct: 61  KGTGYCTLVTGAAVLVQNSLRLFRHEFEEHV 91


>gi|312198406|ref|YP_004018467.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Frankia
           sp. EuI1c]
 gi|311229742|gb|ADP82597.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Frankia
           sp. EuI1c]
          Length = 435

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 23/114 (20%)

Query: 28  HWDNVDKILEKGRD-WIINEVKASGLRGRGGAGF--------------STGMKWSFMPKV 72
           H   +  +  +GR   +++E++A+GL GRGGAGF              S G  WS     
Sbjct: 36  HVARLGPVPYRGRPAQLVDELRAAGLTGRGGAGFPMWRKLAAALGPDTSGGQAWSG---- 91

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               P  +V NA ESEP + KD  ++ H PH +++G  + + A+ A  A++YV+
Sbjct: 92  ----PASVVANAAESEPESAKDAWLLTHAPHLVLDGLALVAEAVSAADAYVYVK 141


>gi|218260395|ref|ZP_03475734.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224549|gb|EEC97199.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii
           DSM 18315]
          Length = 184

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 2/106 (1%)

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVM 362
           DYD L   GS +G+  +IVMD   D + A+ +  + F   ESCG+C PCR G   +  ++
Sbjct: 1   DYDNLLAAGSMMGSGGMIVMDED-DCMVAMAKFYLDFTVEESCGKCAPCRIGNKRLHEML 59

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +++  G     +++ L  ++  I+   +C LG  +  P+   + NF
Sbjct: 60  QKITSGNGTIEDLNRLRNLAGVIKDTALCGLGQTSPNPVLSTMDNF 105


>gi|218512403|ref|ZP_03509243.1| formate dehydrogenase protein, beta subunit [Rhizobium etli 8C-3]
          Length = 119

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 56/105 (53%)

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   +   +
Sbjct: 1   DYESFAARDGLIGHAGMVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETAD 60

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++ +GI  ++  +LL ++   ++  ++CALG    +P+   + +F
Sbjct: 61  KIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHF 105


>gi|150018599|ref|YP_001310853.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149905064|gb|ABR35897.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 414

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 15/227 (6%)

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           K  F  +V  +   T V+N E++  +   L            EN    K+ SI+G V   
Sbjct: 99  KKAFEKDV--FNEVTLVHNAETMYALKNSLE-----------ENYIPKKIISIAGDVKNS 145

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     +  E+I ++ GG       +  V  GG++       ++    + Y  L   
Sbjct: 146 GIYEIPFGTSLREIISEYGGGTES-EKAIKFVQVGGNTGAVFTEEELDTPFL-YSNLIGN 203

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ L  + + V +    ++  + +  +    E+CG+C  CREG   + ++++   +G  +
Sbjct: 204 GTMLEVSKIEVYNVDMCVVNWVTQKMLDNSKETCGKCVYCREGIYQLYKIIKDATEGKGK 263

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +I+L  ++S+ I+  T+C  G  A+ P+   I  FR   E+ ID+
Sbjct: 264 ESDINLALQLSETIKIGTLCDFGRTASNPLYTAINKFRDEFEKHIDR 310


>gi|325681300|ref|ZP_08160829.1| putative protein HymB [Ruminococcus albus 8]
 gi|324106991|gb|EGC01278.1| putative protein HymB [Ruminococcus albus 8]
          Length = 252

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D ++ EV  SG+RGRGGAGF TG KW F      D   Y+  NADE +PG   DR I+  
Sbjct: 186 DEVVKEVLDSGIRGRGGAGFPTGRKWMFTKDAPGD-VKYVACNADEGDPGAFMDRSILEG 244

Query: 101 EP 102
           +P
Sbjct: 245 DP 246


>gi|167720688|ref|ZP_02403924.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           DM98]
          Length = 143

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 57/106 (53%)

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +  +
Sbjct: 21  LDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGVETI 80

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F
Sbjct: 81  ARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHF 126


>gi|153953472|ref|YP_001394237.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
 gi|219854094|ref|YP_002471216.1| hypothetical protein CKR_0751 [Clostridium kluyveri NBRC 12016]
 gi|146346353|gb|EDK32889.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
 gi|219567818|dbj|BAH05802.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 320

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 305 YDGLKEMGSGLGTAAVIVMDRS--TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           Y+ LKE+   +    +I+ DR+   D++K       F   E CG+C PCREG   M+ + 
Sbjct: 140 YEALKEVLLEM-KPEIIIGDRNCMVDVVKDYLN---FLSKEFCGKCIPCREGVKRMLEMA 195

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             + +G A++R+I+ + ++S  I   ++C LG  A  PI   I+ FR   EE + +  RC
Sbjct: 196 TDICEGNAKERDIENMLQMSYVISQASLCNLGKRAQNPIMIAIRYFRDEFEEHL-KNKRC 254


>gi|297745531|emb|CBI40696.3| unnamed protein product [Vitis vinifera]
          Length = 98

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 39/62 (62%)

Query: 4  DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
          D+D IFTN+YGL    L  +M  G W     I+ KG DWI++E+K SGLRGRGG     G
Sbjct: 25 DEDCIFTNIYGLHDPFLKSAMKMGGWYKTGDIVLKGSDWIVSEMKESGLRGRGGVEVRNG 84

Query: 64 MK 65
          ++
Sbjct: 85 VE 86


>gi|167945091|ref|ZP_02532165.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 114

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 2/111 (1%)

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M    ++LI +H GG+  G + L AV  GG S   L    +    +D++ +    S LGT
Sbjct: 1   MGTPLEQLIFEHGGGMLVGKE-LKAVFTGGPSNTILTPKDLD-VPLDFESVAARRSALGT 58

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            A+IV+   T I+K +     F+   SCGQC PC+ GT ++  ++ ++  G
Sbjct: 59  GAMIVVSEGTGIVKRVTEYVNFFADSSCGQCPPCKTGTYYISLLLSKIDTG 109


>gi|254670960|emb|CBA07636.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria
          meningitidis alpha153]
          Length = 96

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 19 SLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
          +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP   S R
Sbjct: 22 TLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPPFLSGR 81


>gi|171463483|ref|YP_001797596.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193021|gb|ACB43982.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 110

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 12/114 (10%)

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVM---DRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
           M    +++D L+  G  + +AAV+V    D++ D+   +     F++HESCGQCTPCR G
Sbjct: 1   MNDIPLNFDTLQPYGCFIDSAAVMVFSDKDKARDMALNVMH---FFEHESCGQCTPCRVG 57

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           TG   ++M+       +  +   L E++  +   +IC  G AA  PI+ + K F
Sbjct: 58  TGKAAQLMQ------TKSWDRKTLEELATVMVDASICGRGQAAPNPIRCIHKYF 105


>gi|115525857|ref|YP_782768.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodopseudomonas palustris BisA53]
 gi|115519804|gb|ABJ07788.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodopseudomonas palustris BisA53]
          Length = 665

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 1/142 (0%)

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
           G WD ++     G++    P   ++    ++D   ++ +  G     V D +  I+ A++
Sbjct: 7   GVWDGVVYDSRTGAADAKTPEYALQN-FDEFDDGNQIRAFFGDRGFFVFDATVSIVDALY 65

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394
                   +SCG CTPCR GT  +   ++R+ + +     +D +  + + +   ++C LG
Sbjct: 66  HYMTKAAEQSCGACTPCRMGTVLVRDALDRMRRSLGSTLSLDDIEMLGEQMRQTSLCGLG 125

Query: 395 DAAAWPIQGLIKNFRPLIEERI 416
            + A  +  ++ NFR  IE  +
Sbjct: 126 QSCAVALLDVLHNFRDQIEAEL 147


>gi|222054704|ref|YP_002537066.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter sp. FRC-32]
 gi|221563993|gb|ACM19965.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter sp. FRC-32]
          Length = 672

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 60/109 (55%), Gaps = 8/109 (7%)

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDI----IKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           YDG + + + +G   +IV DRS D+     + + R+   Y    CG+CTP ++GT  +M 
Sbjct: 33  YDGERPLAAFMGWDGLIVFDRSVDVPAMAAEYMRRVQTLY---CCGKCTPGKKGTKVLMD 89

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            +  ++ G A + ++D + +++K +E    C L  ++  P+   +KNFR
Sbjct: 90  TLAAILGGNATEADLDTIEDLTKLLEN-CKCTLCQSSTVPVLDAVKNFR 137


>gi|160942347|ref|ZP_02089655.1| hypothetical protein CLOBOL_07232 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434711|gb|EDP12478.1| hypothetical protein CLOBOL_07232 [Clostridium bolteae ATCC
           BAA-613]
          Length = 450

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 130/322 (40%), Gaps = 72/322 (22%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++ ++K +G+ G GGAGF T +K +     C+    YL++NA E EP    DR +M H+ 
Sbjct: 3   LLEQIKEAGIVGCGGAGFPTHVKLN-----CTVE--YLIINAAECEPLLRTDRFLMLHKA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++    +    + A   +I ++  +  E  +L+AA+ E      L S  KL       
Sbjct: 56  REIVTAAGMIGDMVQAGKRYIVLKETYSEEIAALEAAITE------LHSPVKL------- 102

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
            +     Y  G+E  ++  + G     R  PP   P +VG       V+N+         
Sbjct: 103 -YKMKNFYPAGDEQIMVCDVTG-----RTVPPSGIPLDVG-----AVVSNL--------- 142

Query: 221 LRRGASWYSGFGRENNR--GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
               A+ YS +     +    K  +++G VN PC V   +  +F E +      +  G  
Sbjct: 143 ----ATVYSIYNASQGQPFTEKYLTVTGAVNSPCIVRAPLGTSFAECL------LLAGGS 192

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA-----VIVMDRSTDIIKAI 333
           +L       SS   +  G M G        KE  +GL         +IV D +  + K  
Sbjct: 193 SL-------SSFHVIAGGPMMGKCYR----KEEAAGLTVTKTTSGYIIVADDTPLVEKHN 241

Query: 334 WRLSVFYKHES--CGQCTPCRE 353
             +SV  K     C QC+ C +
Sbjct: 242 IPISVSLKRAKMCCIQCSYCTQ 263


>gi|39933212|ref|NP_945488.1| oxidoreductase [Rhodopseudomonas palustris CGA009]
 gi|39652837|emb|CAE25579.1| possible oxidoreductase [Rhodopseudomonas palustris CGA009]
          Length = 673

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 52/99 (52%)

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
            V D +  ++ A++        +SCG CTPCR GT  +   ++++ +G+     +D +  
Sbjct: 60  FVFDPTVSLVDALFHYLKAAAEQSCGACTPCRIGTVLVRDALDQMRRGLDAALTLDDIVM 119

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + + I   ++C LG   A  +  ++++FR  IE+ + Q+
Sbjct: 120 LGEQIRQTSLCGLGQTCAVALLAVLRDFRERIEQELAQH 158


>gi|83591135|ref|YP_431144.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Moorella
           thermoacetica ATCC 39073]
 gi|1658402|gb|AAB18329.1| formate dehydrogenase beta subunit [Moorella thermoacetica]
 gi|83574049|gb|ABC20601.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Moorella
           thermoacetica ATCC 39073]
          Length = 707

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 4/112 (3%)

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G +++ + +G   ++V D + D++ A+       + ESCG+C PCR GT  +  V+ R+ 
Sbjct: 32  GGRQLKAFIGWDGLVVTDPAVDLLAALQAYYQAVQGESCGRCVPCRVGTRVIYNVLVRIA 91

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF----RPLIEE 414
            G     ++DLL  V+  +   ++C LG A A  +   +  +    RP +E+
Sbjct: 92  GGEGLPSDLDLLRRVAWIVRDGSLCELGQAGAKAVLDFLDYYSEALRPFLED 143


>gi|162446934|ref|YP_001620066.1| NADH oxidoreductase complex RnfABCDGE type, C subunit [Acholeplasma
           laidlawii PG-8A]
 gi|161985041|gb|ABX80690.1| NADH oxidoreductase complex RnfABCDGE type, C subunit [Acholeplasma
           laidlawii PG-8A]
          Length = 432

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 26/195 (13%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L +S+     + +DK+ ++  D++ N  K +GL G GG+GF T +K +   K+       
Sbjct: 104 LHESVKTRTDEEIDKLTKE--DYV-NITKEAGLVGLGGSGFPTYIKLNTKNKI-----DI 155

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           ++ N  E EP    D ++M   P  LI G + A  A+GA    I V+  ++   E ++ +
Sbjct: 156 ILANGVECEPKLISDYEVMMESPDELIRGLIYAMKAVGAPKGVIAVKKRYVELVERIRFS 215

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +           NS   YD+ ++       Y  G E   +E+  G K  P+ K   PA+ 
Sbjct: 216 L-----------NSYTEYDIKVV--PVGNHYPQGWELEAIEAATGIK-VPQFK--LPADY 259

Query: 200 GLYGCPTTVNNVESI 214
           G+   P  V+ ++SI
Sbjct: 260 GI--IPFNVSTLQSI 272


>gi|316931524|ref|YP_004106506.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Rhodopseudomonas palustris DX-1]
 gi|315599238|gb|ADU41773.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Rhodopseudomonas palustris DX-1]
          Length = 666

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 48/96 (50%)

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
            V D +  ++ A++        +SCG CTPCR GT  +   ++++ +G+     +D +  
Sbjct: 53  FVFDPTVSLVDALYHYLKTAAEQSCGACTPCRVGTVLVRDALDQMRRGMDAALTLDDIVM 112

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + + I   ++C LG   A  +   ++ FRP +E  +
Sbjct: 113 LGEQIRQTSLCGLGQTCAVALLAALREFRPRVEREL 148


>gi|192288571|ref|YP_001989176.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodopseudomonas palustris TIE-1]
 gi|192282320|gb|ACE98700.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodopseudomonas palustris TIE-1]
          Length = 663

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%)

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
            V D +  ++ A++        +SCG CTPCR GT  +   ++++ +G+     +D +  
Sbjct: 50  FVFDPTVSLVDALFHYLKAAAEQSCGACTPCRIGTVLVRDALDQMRRGLDAALTLDDIVM 109

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + + I   ++C LG   A  +   +++FR  IE+ + Q+
Sbjct: 110 LGEQIRQTSLCGLGQTCAVALLAALRDFRGRIEQELAQH 148


>gi|260893625|ref|YP_003239722.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
 gi|260865766|gb|ACX52872.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
          Length = 270

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           ++ GA  D+D L +  S LG+A  + +D S  ++  +     + + ESC +C PC  GT 
Sbjct: 133 KVDGAPTDWDELGKAASVLGSAGKVFLDESVSMVDIVRYFMEYVQQESCAECRPCPIGTK 192

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +++ ++  L  G A   +  L+ E+++ I+  + C LG  A    + L + F   +E
Sbjct: 193 FILDLLNDLGNGGAMP-DSSLVKELARTIKQGSKCGLGRVAGLITEKLWERFYDELE 248


>gi|325570424|ref|ZP_08146201.1| electron transport complex protein RnfC [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156634|gb|EGC68811.1| electron transport complex protein RnfC [Enterococcus casseliflavus
           ATCC 12755]
          Length = 445

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 129/360 (35%), Gaps = 78/360 (21%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           I  N Y  Q   LS       W +         + I+N+++  G+ G+GGA F T +K+S
Sbjct: 101 IIENDYAYQNDFLSAPFD---WQSA------ANETILNKIRQGGVAGKGGATFPTHVKFS 151

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                 + + H L++N  E EP    D  +M+ E   +I G  IA   +      I +  
Sbjct: 152 IDE---TQKIHTLILNGSECEPFLRSDAFLMQKEAQKIIHGAKIAQKLLDGPKIIIGIED 208

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           +  R   ++QAA  E               D  I V      Y  G E  L+E L  ++ 
Sbjct: 209 DKPRAISAMQAASAE---------------DDTIEVVTVPTVYPTGGEKQLVELLTDQEV 253

Query: 188 QPRLKPP---FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
                 P     A++G+      +N   S A+   +             +     +  ++
Sbjct: 254 ------PLGGLTADIGI----VLINVATSFAIAEAVC-----------YDKPLIERYTTV 292

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP-GGSSVPCLPAGQMRGAIM 303
           +G V  PC V+  +     ELI+   GG +G    L+   P  G SV  L     +    
Sbjct: 293 TGDVQNPCIVKNPLGTLAGELID-FAGGFQGAPSKLILGGPMMGKSVKTLKVPVTK---- 347

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
                       G+  ++V +  TD     W     Y    C +C  C E     +  ME
Sbjct: 348 ------------GSNGIVVFNEETD-----W----LYAENPCIRCNKCVEACPMRLMPME 386


>gi|319941097|ref|ZP_08015433.1| hypothetical protein HMPREF9464_00652 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805454|gb|EFW02256.1| hypothetical protein HMPREF9464_00652 [Sutterella wadsworthensis
           3_1_45B]
          Length = 684

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%)

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           LP G        ++    + S +G    +V + +  +   ++      +  SCG+CTPCR
Sbjct: 26  LPVGFPLEEAAAFNRGNPLTSVIGPQGFLVFENAPHLTVILYAYYEDARSFSCGRCTPCR 85

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            GT  +   ++  ++G     + D + E +++++  ++C +G  +A PI G I+NFR  +
Sbjct: 86  MGTVLIAEALKNALEGRGSTVDWDEIAETARHMKVSSLCGIGLQSAEPILGAIENFRTEL 145

Query: 413 E 413
           E
Sbjct: 146 E 146


>gi|332799823|ref|YP_004461322.1| RnfABCDGE type electron transport complex subunit C
           [Tepidanaerobacter sp. Re1]
 gi|332697558|gb|AEE92015.1| electron transport complex, RnfABCDGE type, C subunit
           [Tepidanaerobacter sp. Re1]
          Length = 440

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 123/293 (41%), Gaps = 63/293 (21%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D I N ++ +G+ G GGAGF T +K S  P+   D    ++VNA E EP    D  ++ 
Sbjct: 121 QDEIKNLIREAGITGLGGAGFPTQVKLSVPPEKNID---TIIVNAAECEPYITADHRLLL 177

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
             P  +I G      A G   +FI +        +S+  A+             K G +V
Sbjct: 178 ERPEDVIFGLEAIMKATGVKKSFIGIEDNKPDAIDSISKAI-----------AGKKGIEV 226

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVV 217
            ++    A  Y  G E  L++++ G     R  P    P +VG+      VNN  + A +
Sbjct: 227 VVL----ATKYPQGGEKQLIKAVTG-----REVPSGGLPMDVGVI-----VNNAGTCAAI 272

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
            + L+ G               ++ +++G  +  P  +   +  +  ++IE  CGG +G 
Sbjct: 273 ASALKTGMPLIE----------RITTVTGSGIKEPKNLLIRIGTSLIDIIE-QCGGFKG- 320

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRG---AIMDYDGLKEMGSGLGTAAVIVMDRS 326
                  IPG      L  G M G   + +D   +K      GT+ ++V+++S
Sbjct: 321 -------IPGK----VLMGGPMMGLAQSELDVPAIK------GTSGILVLEKS 356


>gi|302335611|ref|YP_003800818.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Olsenella uli DSM 7084]
 gi|301319451|gb|ADK67938.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Olsenella uli DSM 7084]
          Length = 607

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           +SCG+CTPCR G   +  +MER++ G A++  IDL+   ++ I   + CA+G  A     
Sbjct: 50  QSCGKCTPCRIGLPALGELMERVLDGTAEEYTIDLIERTAEAIYLSSDCAIGYEAGEMAL 109

Query: 403 GLIKNFRPLIEERIDQYHRCNFQ 425
             ++ FR   E  + ++H C F+
Sbjct: 110 EAVRGFRDDFEFHL-RHHACGFE 131


>gi|78778018|ref|YP_394333.1| glutamate synthase (NADPH) [Sulfurimonas denitrificans DSM 1251]
 gi|78498558|gb|ABB45098.1| Glutamate synthase (NADPH) [Sulfurimonas denitrificans DSM 1251]
          Length = 677

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTGWMMRVM 362
           YD  +E  + +G   V + D+  D+I+     +  Y+   E+CG+C P R G   +   +
Sbjct: 35  YDSHRESKAFIGWDGVALFDKDVDVIRLAMEYAAQYQEYSEACGRCAPGRWGGRILYDQL 94

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +++ +G     ++D L E+ K+++  + C +G     PI  L+ +F  +  E I+++
Sbjct: 95  DKIARGEGSVADLDHLREIGKSMQITSKCEIGKTVPNPILDLMTHFEHVFLECINEH 151


>gi|120602428|ref|YP_966828.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio vulgaris DP4]
 gi|120562657|gb|ABM28401.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio vulgaris DP4]
          Length = 673

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 51/100 (51%)

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G     V +   +++ A+W+       ESCG+CTPCR GTG +   +  L++       
Sbjct: 46  VGDRGFFVFEPGVNLLDALWQYMERAARESCGKCTPCRVGTGIIRDSLAALLRDGVGSGG 105

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +  L E+++ +   ++C LG      + G +++F+ ++ E
Sbjct: 106 LGTLVELAEQVRSTSLCGLGRTCTVALCGALEHFQDMLVE 145


>gi|46580182|ref|YP_010990.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449599|gb|AAS96249.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233827|gb|ADP86681.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio vulgaris RCH1]
          Length = 673

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 51/100 (51%)

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G     V +   +++ A+W+       ESCG+CTPCR GTG +   +  L++       
Sbjct: 46  VGDRGFFVFEPGVNLLDALWQYMERAARESCGKCTPCRVGTGIIRDSLAALLRDGVGSGG 105

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +  L E+++ +   ++C LG      + G +++F+ ++ E
Sbjct: 106 LGTLVELAEQVRSTSLCGLGRTCTVALCGALEHFQDMLVE 145


>gi|153872669|ref|ZP_02001494.1| Electron transport complex protein rnfC [Beggiatoa sp. PS]
 gi|152070866|gb|EDN68507.1| Electron transport complex protein rnfC [Beggiatoa sp. PS]
          Length = 446

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 105/258 (40%), Gaps = 52/258 (20%)

Query: 41  DWI-------INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           DW+       IN V+ +G+ G GGA F + +K++ +P     +  +LV+N  E EP    
Sbjct: 123 DWMALSIEEFINHVQKAGIVGMGGAAFPSHVKYA-LPDGMQIK--HLVINGAECEPYLTN 179

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D  +M   P TL+ G  I    +GA  A I V         +LQ  +D+     +     
Sbjct: 180 DHRLMLERPDTLLRGIEIVRQKLGATQATIGVELNKTDAINTLQKHIDQQQIKNIRMVPL 239

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESL---EGKKGQPRLKPPFPANVGLYGCPTTVNN 210
           ++ Y               G E  +++SL   E   GQ       P +VG+     TVNN
Sbjct: 240 RVKYPQ-------------GAEKMMIKSLFNIEIPPGQ------LPRDVGV-----TVNN 275

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKH 269
           V +I  +      G               ++ ++SG  V  P  +   +     E++ + 
Sbjct: 276 VSTIVAIADYFETGMPLIE----------RIVTVSGPGVEQPANLMVPLGTPAREVL-RF 324

Query: 270 CGGIRGGWDNLLAVIPGG 287
           CGG++   +   +VI GG
Sbjct: 325 CGGLK---ETTRSVIMGG 339


>gi|88859825|ref|ZP_01134464.1| electron transport complex protein RnfC [Pseudoalteromonas tunicata
           D2]
 gi|88817819|gb|EAR27635.1| electron transport complex protein RnfC [Pseudoalteromonas tunicata
           D2]
          Length = 872

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
           D  LE     IIN+++++G+ G GGAGF+T +K   + K+      YL+VN  E EP   
Sbjct: 126 DNYLELCASEIINKIRSAGISGMGGAGFATYVKAQPLQKI-----DYLIVNGVECEPYIT 180

Query: 93  KDRDIMRHEPHTLIEGCVIASFAI 116
            D  +M+    T+IEG +I +  +
Sbjct: 181 SDDRLMQEHATTIIEGSLILAHVL 204


>gi|34556902|ref|NP_906717.1| formate dehydrogenase, BETA subunit (formatedehydrogenase [NADP+])
           [Wolinella succinogenes DSM 1740]
 gi|34482617|emb|CAE09617.1| FORMATE DEHYDROGENASE, BETA SUBUNIT (FORMATEDEHYDROGENASE [NADP+])
           [Wolinella succinogenes]
          Length = 649

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           +G A V++ D + D+I      +  Y+   E+CG+C P + G   +  ++E++ +G  ++
Sbjct: 30  IGWAGVMIYDPTLDVIALAKEYARQYQCFAETCGRCAPGKFGGKILFDLLEKIDQGRGEE 89

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
            +++ L EV K +   + C +G     PI  L++ +RPL  E +    R
Sbjct: 90  SDLERLVEVGKLMMTTSKCEVGKTTPLPILDLLEAYRPLFVEALGNRSR 138


>gi|225386798|ref|ZP_03756562.1| hypothetical protein CLOSTASPAR_00546 [Clostridium asparagiforme
           DSM 15981]
 gi|225047114|gb|EEG57360.1| hypothetical protein CLOSTASPAR_00546 [Clostridium asparagiforme
           DSM 15981]
          Length = 441

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 100/267 (37%), Gaps = 52/267 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG K          R  +L+VN  E EP    DR +MRH    +I      +  +GA 
Sbjct: 20  FPTGKKLDC-------RVEWLIVNGAECEPLLRTDRYLMRHNAERVIRAAGAVARMVGAK 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++  + +E ++L+AA         L  +   G    I +      Y  G+E  L+
Sbjct: 73  HCVIALKRAYTQEWKALEAA---------LAGDGPEGGTALIELFPLDSFYPAGDEQVLV 123

Query: 180 ESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
             +       R+ PP   P +VG   C     N  S A+    L +              
Sbjct: 124 YEV-----TERVVPPAGIPLDVGAVVCNLATMNAISDAMDGIPLTK-------------- 164

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
             K  +++G V  P  V   +   F+E I    G  +  +     VI GG          
Sbjct: 165 --KYITVTGEVKCPSIVRAPVGTPFEECIRLAGGSKKERY----CVIDGGP--------- 209

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           M G IMDY+  +E      T+ +IV+D
Sbjct: 210 MMGKIMDYEAAREEAVTKTTSGLIVLD 236


>gi|95928557|ref|ZP_01311304.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135347|gb|EAT16999.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 651

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 4/102 (3%)

Query: 310 EMGSGLGTAAVIVMDRSTDIIK--AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           ++G+ +G   V+++D  TD++   A +   V  KH  CG+CTP ++GT  M   + R+++
Sbjct: 39  KVGAFMGWDGVVLLDGETDVVAMAAEYMKRVQEKH-CCGKCTPGKKGTRVMQDTLARILQ 97

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           G  ++R+++++  +   +EG   C L   +A P+   +K FR
Sbjct: 98  GHGEERDLEIIENLKSLLEG-CKCTLCMTSAIPVLDTVKYFR 138


>gi|317471774|ref|ZP_07931113.1| electron transport complex [Anaerostipes sp. 3_2_56FAA]
 gi|316900751|gb|EFV22726.1| electron transport complex [Anaerostipes sp. 3_2_56FAA]
          Length = 438

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 38/244 (15%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           RD ++  +K +G+ G GGAGF T +K +  PK   D   Y++VN  E EP    D  IM 
Sbjct: 120 RDEVLAAIKDAGIVGLGGAGFPTHVKLA--PKD-PDAIEYIIVNGAECEPYITGDYRIMM 176

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
             P  L+EG  I           I V       ++   A V +C              D 
Sbjct: 177 ETPEVLVEGLNIVLDLFPKAKGIIAVE----DNKKDAIAKVSDCVKG-----------DA 221

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I V      Y  G E +L+ +  G+     +    PA+ G       V+NV +I  V  
Sbjct: 222 RISVAELKTKYPQGAERSLIYATTGRAINSSM---LPADAGCI-----VDNVATIVAVKD 273

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            ++ G   +           ++ +++G  +  P  +         ELIE   GG +G  +
Sbjct: 274 AVKEGKPLFQ----------RVVTVTGDAIESPKNLLVRTGTNVSELIE-AAGGFKGQPE 322

Query: 279 NLLA 282
            +++
Sbjct: 323 KVIS 326


>gi|294678805|ref|YP_003579420.1| electron transport complex protein RnfC [Rhodobacter capsulatus SB
           1003]
 gi|17380290|sp|Q52716|RNFC_RHOCA RecName: Full=Electron transport complex protein rnfC; AltName:
           Full=Nitrogen fixation protein rnfC
 gi|435525|emb|CAA51399.1| rnfC [Rhodobacter capsulatus]
 gi|1905810|emb|CAA72670.1| RnfC protein [Rhodobacter capsulatus]
 gi|294477625|gb|ADE87013.1| electron transport complex protein RnfC [Rhodobacter capsulatus SB
           1003]
 gi|742355|prf||2009377B rnfC protein
          Length = 519

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 39/243 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99
           + I  +V A+G+ G GGA F + +K +   K        L++N  E EP  TC DR +MR
Sbjct: 136 EEIAAQVAAAGIVGMGGATFPSAVKLNLRAKYDLT---TLIINGAECEPYLTCDDR-LMR 191

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                + +G  I + A+G    F+ +     +  E++               N  LGY  
Sbjct: 192 ERAEEIADGIGIMARALGVKQVFVAIESNKPQAIEAMTR------------YNRALGYTF 239

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I  H     Y  G E  L++ + G++   R      A++G+      V+N+ +   V  
Sbjct: 240 KI--HVVPTQYPMGSEKHLVKMITGQETPARA---LTADLGV-----VVHNIATAHAVHL 289

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +R G    +          +  ++SGH +  P  +   +     E+I  HCGG     D
Sbjct: 290 AVRYGEPLIA----------RTVTVSGHGIRRPANLRVLIGTPVSEII-AHCGGFTEEPD 338

Query: 279 NLL 281
            LL
Sbjct: 339 RLL 341


>gi|330884893|gb|EGH19042.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 42

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/38 (57%), Positives = 27/38 (71%)

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
             PR KPPFPA VG++G PT VNNVE++  VP I+  G
Sbjct: 4   ANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNG 41


>gi|289449574|ref|YP_003475793.1| putative electron transport complex protein RnfC [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184121|gb|ADC90546.1| putative electron transport complex protein RnfC [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 449

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 99/246 (40%), Gaps = 38/246 (15%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPGTCKDRDIM 98
           RD  I  ++ SGL G GGAGF T +K     +   D P   LV+NA E EP    D   M
Sbjct: 127 RDEFIAAIQQSGLVGLGGAGFPTHVKL----RAPKDHPFEILVINAAECEPYLTVDYRAM 182

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
                 L+ G       I A   ++ +    I   ++ + AV +   +  L S +    +
Sbjct: 183 LDNTDNLLAG-------IAAVTKYLDIPRVVIGTEDNKKDAVTKLLQA--LRSEAGDAIN 233

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAV 216
            D+ +      Y  G E  L+ +  G++      P    PANVG       V NV S+A 
Sbjct: 234 ADVEIMALPSRYPQGAEKTLIYAATGRR-----VPAGGLPANVG-----CVVMNVTSVAF 283

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   LR G    +          K  ++ G  + +P  +   +     +++E  CGG+ G
Sbjct: 284 VGDYLRTGHPLVA----------KNITVDGDIIAHPQNIRAVIGTPIKDIVE-FCGGLTG 332

Query: 276 GWDNLL 281
               +L
Sbjct: 333 EPSKIL 338


>gi|302389136|ref|YP_003824957.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199764|gb|ADL07334.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 441

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 116/277 (41%), Gaps = 53/277 (19%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           ++ N  E EP    ++ +++H P  +++G  IA  A GA    I ++ ++   R+SL+  
Sbjct: 37  VIANMAECEPLLFTNQALIQHHPDEVLQGLQIAMQATGAKKGVIALKKKYEACRKSLEG- 95

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                         K+GY  +I++H     Y  G+E  +++ +  K+  P      P++V
Sbjct: 96  --------------KIGYYENIVIHELEDFYPAGDEHVMVKEVL-KRTIPM--SGIPSDV 138

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           G       V+NVE++  +    R G      F           +++G V +P  V+  + 
Sbjct: 139 G-----AVVHNVETLYNIKRAYRDGKPVTEKF----------VTVAGAVRHPLVVKVPIG 183

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY-DGLKEMGSGLGTA 318
           + F EL++     + GG        P       +  G M G+ +D  D + +  S L   
Sbjct: 184 LRFSELLD-----LAGG--------PAVKDYILVHGGPMMGSEVDAGDTVTKTTSAL--- 227

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCRE 353
            +++ D +   I    R+ V  K    +C QC  C +
Sbjct: 228 -LVIPDGAFPHISRRARMEVLLKRAKAACCQCRICTD 263


>gi|160879334|ref|YP_001558302.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Clostridium phytofermentans ISDg]
 gi|160428000|gb|ABX41563.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium phytofermentans ISDg]
          Length = 442

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 41/227 (18%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           VK  G+ G GGAGF T  K+S       ++   +++N  E EP     R ++R   + ++
Sbjct: 11  VKEYGICGAGGAGFPTYAKFS-------NKVDTIILNCAECEPLLKLHRQLLRDRAYEVL 63

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
           +   I + +IGA  A I V+                 Y + +    +++G   ++ +   
Sbjct: 64  KAFSIIAESIGAKEAIIVVKPS---------------YKNTIAAVEAEIGAYKNMSLKLC 108

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
              Y  G+E  L+    G+  +P      P ++G+      V NVE++  V         
Sbjct: 109 KEVYPAGDEVVLIYEATGRVVKPG---GLPVDIGV-----AVFNVETVYNV--------- 151

Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            Y          +KL S+ G V  P TV   + +T  E++E   GGI
Sbjct: 152 -YEAVINHRPVTSKLVSVVGEVKEPKTVRVPLGMTVKEVVE-MVGGI 196


>gi|224369753|ref|YP_002603917.1| GltD1 [Desulfobacterium autotrophicum HRM2]
 gi|223692470|gb|ACN15753.1| GltD1 [Desulfobacterium autotrophicum HRM2]
          Length = 659

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 46/86 (53%)

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
           ++  +++ A+ +       ESCG+CTPCR GT  +   +E LV   A    +D +  +++
Sbjct: 55  EKKVNLLDALLQYMERVAKESCGKCTPCRVGTQIIRHKLEDLVNRKADAEALDEIAVIAE 114

Query: 384 NIEGRTICALGDAAAWPIQGLIKNFR 409
           ++   ++C LG  A   +  ++ +FR
Sbjct: 115 HVRDTSLCGLGQTATVALLEVLAHFR 140


>gi|255994383|ref|ZP_05427518.1| Na(+)-translocating NADH-quinone reductase, A subunit [Eubacterium
           saphenum ATCC 49989]
 gi|255993096|gb|EEU03185.1| Na(+)-translocating NADH-quinone reductase, A subunit [Eubacterium
           saphenum ATCC 49989]
          Length = 448

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 101/254 (39%), Gaps = 38/254 (14%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           + V K   K  +  I  V+ASG  G GGA F T +K  F PK   D    L++NA E EP
Sbjct: 120 EEVKKPEVKDFESFIAAVRASGAVGLGGAAFPTHIK--FNPKNI-DEVDTLIINAAECEP 176

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M  +P  +++G  I    +G   A I +        E L + +         
Sbjct: 177 FITADHRLMLEDPVDILDGIEITMRYMGIKRAIIGIESNKPNAIEVLNSEI--------- 227

Query: 150 GSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
            S  KL G  + ++       Y  G E  L     G+K    +    PA++GL      +
Sbjct: 228 -SKRKLDGVSIKVL----QSRYPQGAERVLAYEATGRKLDAGV---LPADIGL-----II 274

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
            NV +IA +   +R G    +          K  ++ G  VN P  V  ++     +LI 
Sbjct: 275 TNVATIAFIGQYMRNGIPLIN----------KRLTVDGDAVNTPQNVIVAIGTPIKDLIA 324

Query: 268 KHCGGIRGGWDNLL 281
             CGG +     +L
Sbjct: 325 A-CGGYKKHPKKIL 337


>gi|261880457|ref|ZP_06006884.1| electron transport complex [Prevotella bergensis DSM 17361]
 gi|270332796|gb|EFA43582.1| electron transport complex [Prevotella bergensis DSM 17361]
          Length = 449

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 103/269 (38%), Gaps = 38/269 (14%)

Query: 16  QGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +G    +S+ R    + ++   E   + IIN +K +G+ G GGAGF T +K    P    
Sbjct: 102 EGDEWEESIDRSEKLETLNSHPELTSEDIINRLKVAGVTGMGGAGFPTFIKLMPPP---G 158

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +   +++N  E EP    D  +M      +I G  +   ++    A+I           
Sbjct: 159 AKAECIIINGVECEPYITSDYRLMMEHADEIIVGVQLLMKSVHVDKAYI----------- 207

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
                ++E     +     K   D  I V   A  Y  G E  L+ ++ G+  +    P 
Sbjct: 208 ----GIEENKPKAIALMTEKAASDSRIKVVPLAQKYPQGGEKQLVAAVIGR--EVPAPPA 261

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
            P NVG                +P  +    + Y    +      +  S+SG  + +P  
Sbjct: 262 IPVNVG---------------AIPVNVGTTFAVYQAVMKNKPLFERYTSVSGKQIKHPGN 306

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLA 282
               M  +F +LIE  CGG+  G + +LA
Sbjct: 307 FLVRMGTSFGQLIEA-CGGMPDGDNKVLA 334


>gi|312143455|ref|YP_003994901.1| electron transport complex, RnfABCDGE type, C subunit
           [Halanaerobium sp. 'sapolanicus']
 gi|311904106|gb|ADQ14547.1| electron transport complex, RnfABCDGE type, C subunit
           [Halanaerobium sp. 'sapolanicus']
          Length = 443

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 114/286 (39%), Gaps = 60/286 (20%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           K +SD     + DN+        D I N V+ +G+ G GGA F T +K S    V  D+ 
Sbjct: 108 KLVSDLEKHQNLDNL------SPDEIRNIVREAGIVGLGGAMFPTHVKLS----VPEDKN 157

Query: 78  -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+++N  E EP    D  +M   P+ ++ G      A+ A    I +    +   ES+
Sbjct: 158 VEYVILNGAECEPYLTVDHRVMVERPNAIVFGLKALMKAVNAEKGLIGIEDNKMEAVESM 217

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           Q AV +               + +I +      Y  G E  L+E+L  ++          
Sbjct: 218 QDAVAD---------------EDNIEIKIVETKYPQGGEKMLIEALLDRE---------- 252

Query: 197 ANVGLYGCP----TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYP 251
             V + G P      VNN  + A V   +R G               +  SI+G  +  P
Sbjct: 253 --VPVGGLPLDIEVVVNNTSTAAAVADAIREGKPLID----------RSISITGRGIESP 300

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           C +   +     +L+E+  GG++   ++ + VI GG   P + A Q
Sbjct: 301 CNLIYRIGTKLSDLVEQ-AGGLK---EDAVKVIAGG---PMMGAAQ 339


>gi|315924585|ref|ZP_07920804.1| Na(+)-translocating NADH-quinone reductase subunit A
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622115|gb|EFV02077.1| Na(+)-translocating NADH-quinone reductase subunit A
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 410

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 47/252 (18%)

Query: 30  DNVDKILEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
           D VD  ++   D+       IIN +K +G+ G GGA F T +K +  P    D    +++
Sbjct: 69  DTVDPAIKPYGDYQQYSSSEIINIIKEAGIVGLGGATFPTHVKLTVSPDKHVDS---VIL 125

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           N  E EP    D  +M+  P  +I G  IA  A+     +I +      + +++ A V  
Sbjct: 126 NGAECEPYLTADDHLMQDRPEKVIAGLHIAMRALDVSKGYIAIED---NKPDAINAIVGV 182

Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200
           C              D  + V      Y  G E  L+ ++ G     R  P    PA+ G
Sbjct: 183 CKG------------DDAVEVIRLKTKYPQGAEKQLITAVTG-----REVPSGGLPADAG 225

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           +      V NV + A V T    G   Y  +         +      V  P T+E  + +
Sbjct: 226 V-----VVMNVGTAAQVATTFETGMPLYKRY---------VTCTGDVVKNPATLEVLVGM 271

Query: 261 TFDELIEKHCGG 272
           ++ E+I++ CGG
Sbjct: 272 SYQEVIDE-CGG 282


>gi|313900436|ref|ZP_07833929.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp. HGF2]
 gi|312954498|gb|EFR36173.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp. HGF2]
          Length = 610

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 337 SVFYK---HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
           S F K    ++CG+C PCR G   +  ++E +++G A    IDL+ + ++NI     CA+
Sbjct: 41  SAFLKLCHAQTCGKCVPCRIGLAQLQMLLEDVLEGRAALSTIDLIEKTAQNISWSADCAI 100

Query: 394 GDAAAWPIQGLIKNFRPLIEERI 416
           G  AA  +   ++ FR   EE I
Sbjct: 101 GQEAADMVLKGVQGFRDDYEEHI 123


>gi|332296329|ref|YP_004438252.1| methyl-viologen-reducing hydrogenase delta subunit
           [Thermodesulfobium narugense DSM 14796]
 gi|332179432|gb|AEE15121.1| methyl-viologen-reducing hydrogenase delta subunit
           [Thermodesulfobium narugense DSM 14796]
          Length = 274

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 52/100 (52%)

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+  L    + +G+A  +  D +  +++ +     + +  SCG+C PCR G+  M  ++
Sbjct: 141 IDWATLSRTIAVVGSAGKLFWDENKCMVEMVDFFLDYTQKNSCGECVPCRIGSKRMQEIV 200

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           +++  G   + EI +L E+S+ I   + C LG  A   ++
Sbjct: 201 KKISNGSVSEEEISILNELSEVIGASSKCDLGKMAGKAVK 240


>gi|330860332|emb|CBX70645.1| hypothetical protein YEW_HF31200 [Yersinia enterocolitica W22703]
          Length = 88

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/29 (68%), Positives = 26/29 (89%)

Query: 43 IINEVKASGLRGRGGAGFSTGMKWSFMPK 71
          +++ VK +GL+GRGGAGFSTG+KWS MPK
Sbjct: 57 VVSLVKDAGLKGRGGAGFSTGLKWSLMPK 85


>gi|152993803|ref|YP_001359524.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Sulfurovum sp. NBC37-1]
 gi|151425664|dbj|BAF73167.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Sulfurovum sp. NBC37-1]
          Length = 669

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 9/120 (7%)

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTGWMMRVM 362
           Y G K   + +G   V + D + D ++   + +  Y+   E+CG+C P R G   +  ++
Sbjct: 35  YHGEKNSKAFIGWDGVAIFDENIDAVELASKYAAQYQEYSEACGRCAPGRWGGRILYDLL 94

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +++ +G     +I  L E+SK +   + C +G     PI  L++ ++       DQ+  C
Sbjct: 95  DKIARGEGSHDDIAHLKEISKTMMATSKCEIGKTVPKPILDLMEYYK-------DQFDTC 147


>gi|302341925|ref|YP_003806454.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfarculus baarsii DSM 2075]
 gi|301638538|gb|ADK83860.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfarculus baarsii DSM 2075]
          Length = 641

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 18/131 (13%)

Query: 285 PGGSSVPC--LPA----GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           PG   VP   LPA    G+   A M +DGL             + D S D++        
Sbjct: 14  PGREQVPTDQLPAEFAAGRPLRAFMGWDGL------------FIHDESVDLVDMARAYMD 61

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
             + ESCGQC PCR G   M  +++ L  G     ++D L  +++ +   + C +G    
Sbjct: 62  QAQKESCGQCFPCRLGVKAMSAILDGLCAGKGAPADLDRLESLARFVSRASRCDIGQTTP 121

Query: 399 WPIQGLIKNFR 409
            PI  L+ + R
Sbjct: 122 RPILDLLTHRR 132


>gi|331001661|ref|ZP_08325184.1| hypothetical protein HMPREF0491_00046 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413382|gb|EGG92749.1| hypothetical protein HMPREF0491_00046 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 448

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D I   VK +G+ G GGAGF T +K S  PK   D  +Y++VN  E EP    D  +M 
Sbjct: 123 KDKIRKIVKDAGIVGLGGAGFPTHVKIS--PK-NEDEINYIIVNGAECEPYLTSDYRLMM 179

Query: 100 HEPHTLIEGCVI 111
            EP  +IEG  I
Sbjct: 180 EEPKKIIEGLKI 191


>gi|289423989|ref|ZP_06425778.1| FAD dependent oxidoreductase [Peptostreptococcus anaerobius 653-L]
 gi|289155564|gb|EFD04240.1| FAD dependent oxidoreductase [Peptostreptococcus anaerobius 653-L]
          Length = 610

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR G G +  +ME+++   A +  IDL+ E S+ I     CA+G  AA  + 
Sbjct: 50  QTCGKCVPCRIGLGKLKELMEKVLSSEADESTIDLIEETSRVIMETADCAIGTEAAEMVL 109

Query: 403 GLIKNFR 409
             +  FR
Sbjct: 110 KGVMGFR 116


>gi|332879376|ref|ZP_08447073.1| electron transport complex, RnfABCDGE type, C subunit
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682796|gb|EGJ55696.1| electron transport complex, RnfABCDGE type, C subunit
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 447

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 109/265 (41%), Gaps = 48/265 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+N+VKA+G+ G GGA F   +K +  PK    +   +++NA E EP    D  +M  +P
Sbjct: 128 IVNKVKAAGIVGMGGATFPCHVKLT-PPK--GTKAECVIINAVECEPYLTADHRLMLEKP 184

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++ G  +   A+G    +I +               ++  A  LL   +K    ++I+
Sbjct: 185 DEILVGVDLIMKAVGVDKGYIGIEN-------------NKPDAIALLTEKAKAYSHIEIV 231

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
                  Y  G E  L+ ++ G+  +    P  P NVG       V NV ++  +     
Sbjct: 232 PLQ--VKYPQGGEKQLIAAVTGR--EVPAPPALPINVG-----AVVQNVGTVFAI----- 277

Query: 223 RGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
                Y    +      ++ +++G  V  P  +   +    ++LIE  CGG+    +N  
Sbjct: 278 -----YEAVMKNKPLFERVITVTGKEVQNPSNLLARIGTPMNQLIE-ECGGLP---ENTG 328

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYD 306
            VI GG          M  A+M+ D
Sbjct: 329 KVIGGGP--------MMGKALMNLD 345


>gi|288942376|ref|YP_003444616.1| RnfABCDGE type electron transport complex subunit C [Allochromatium
           vinosum DSM 180]
 gi|288897748|gb|ADC63584.1| electron transport complex, RnfABCDGE type, C subunit
           [Allochromatium vinosum DSM 180]
          Length = 504

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 101/262 (38%), Gaps = 43/262 (16%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           H   V+       + I   V A+G+ G GGA F + +K     +      H LV+N  E 
Sbjct: 112 HIQGVEDPFALAPEEIAARVAAAGIVGLGGATFPSAVKLDLRKRYAV---HTLVINGAEC 168

Query: 88  EPG-TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           EP  TC DR +MR    ++I+G  + + A+G     I                +++    
Sbjct: 169 EPYLTCDDR-LMRERAESVIDGIRLMARALGVSRIVI---------------GIEDNKPE 212

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                      D DI +      Y  G E  L+++L G++   R      A++G+     
Sbjct: 213 AQAAMAVAASIDPDIRIARLPTRYPMGSEKHLVQTLTGRETPARG---LTADIGV----- 264

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDEL 265
            V+N  +   V   LR G    +          ++ ++S G +  P  V   +     +L
Sbjct: 265 VVHNPATAFAVHEALRLGHPLVA----------RVVTVSGGAIARPANVRVPLGTRVQDL 314

Query: 266 IEKHCGGIRGGWDNLLAVIPGG 287
           I  HCGG +   D    +I GG
Sbjct: 315 I-AHCGGFK---DEPARLISGG 332


>gi|300856191|ref|YP_003781175.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
 gi|300436306|gb|ADK16073.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
          Length = 926

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 45/78 (57%)

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           + +SCG+CT CREG   +  + + ++KG ++K ++ ++ E++  ++    C+LG  +  P
Sbjct: 230 RKQSCGKCTFCREGLYQLDVIFDDMIKGRSEKEDLAMVEELTSAMKFSCNCSLGKCSGEP 289

Query: 401 IQGLIKNFRPLIEERIDQ 418
               I  F+  +E+ I +
Sbjct: 290 AASAITEFKLEVEQHIKK 307


>gi|225027273|ref|ZP_03716465.1| hypothetical protein EUBHAL_01529 [Eubacterium hallii DSM 3353]
 gi|224955426|gb|EEG36635.1| hypothetical protein EUBHAL_01529 [Eubacterium hallii DSM 3353]
          Length = 437

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 27  GHWDNV--DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           G ++ V    + EK  + IIN VK +G+ G GGAGF T +K S  PK   ++   +++NA
Sbjct: 103 GEYETVSFQPVTEKTNEAIINAVKEAGIVGLGGAGFPTHVKLS--PKE-PEKIDTIIINA 159

Query: 85  DESEPGTCKDRDIMRHEPHTLIEG 108
            E EP    D   M   P  LI G
Sbjct: 160 AECEPYITADYRCMMEIPEQLISG 183


>gi|323704921|ref|ZP_08116498.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535847|gb|EGB25621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 455

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 123/318 (38%), Gaps = 64/318 (20%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D + N V  +G+ G GGAGF T  K        +     +++N  E EP    DR ++  
Sbjct: 4   DELKNIVFENGIVGAGGAGFPTHAKL-------TTGIDTIILNGAECEPLLRVDRQLLAI 56

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               ++         +GA    + ++  +       +AA+D      L+G+   L   V 
Sbjct: 57  YTDEILMTLSFVVDTLGARSGIVAIKSAY-------KAAIDS--VKNLIGNYKNLELKV- 106

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKP--PFPANVGLYGCPTTVNNVESIAVVP 218
                    Y  G+E  L+    G     R+ P    P +VG     T V NVE++    
Sbjct: 107 -----LPDVYPAGDEVVLIYETTG-----RIVPEGSIPISVG-----TIVMNVETV---- 147

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
                  + Y+    ++    K  +++G+V  P T +  +  +  ELIEK  G +   ++
Sbjct: 148 ------LNVYNAIYLKHPVTEKYVTVTGNVKCPSTFKVKVGTSVAELIEKAGGCLEEDYE 201

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII-KAIWRLS 337
            ++              G M G I+D    ++      T A+IV+ +   +I K    +S
Sbjct: 202 VIM-------------GGPMTGKIVD----RKAPITKTTKAIIVLPKDHPVITKRKTNIS 244

Query: 338 VFYKH--ESCGQCTPCRE 353
           +  K     C QC  C +
Sbjct: 245 IELKRAMSVCSQCQMCTD 262


>gi|226941247|ref|YP_002796321.1| oxidoreductase [Laribacter hongkongensis HLHK9]
 gi|226716174|gb|ACO75312.1| Possible oxidoreductase [Laribacter hongkongensis HLHK9]
          Length = 743

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%)

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
           +V D +  ++ A  +       ESCG+C PCR GT  ++  +E L +G    R +  + E
Sbjct: 122 LVFDPAASLVDAFRQYMQRAVDESCGKCAPCRIGTRKLLDELEALQRGKLTDRSLPTILE 181

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNF 408
           ++  +   ++C LG      +   I++F
Sbjct: 182 LASLVAESSLCGLGRTCTLALAAAIRHF 209


>gi|152990042|ref|YP_001355764.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Nitratiruptor sp. SB155-2]
 gi|151421903|dbj|BAF69407.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Nitratiruptor sp. SB155-2]
          Length = 680

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 2/104 (1%)

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           +G A + +M    D++K     +  Y+   E+CG+C P R G   +  + +++ +G  +K
Sbjct: 45  IGWAGIALMSDDVDVVKLATEYAKQYQVYSEACGRCAPGRWGGRILYDLFDKIARGEGEK 104

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +++ L EVSK +   + C +G     P+  ++++F   I++ I
Sbjct: 105 SDVEHLKEVSKTMMETSKCEIGRTVPKPLLDILEHFSDEIDDLI 148


>gi|83311714|ref|YP_421978.1| electron transport complex protein rnfC [Magnetospirillum
           magneticum AMB-1]
 gi|82946555|dbj|BAE51419.1| Electron transport complex protein rnfC [Magnetospirillum
           magneticum AMB-1]
          Length = 498

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 117/286 (40%), Gaps = 45/286 (15%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKA----SGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           DS  +  W     ++        NE+KA    +G+ G GGA F + +K     +    + 
Sbjct: 102 DSDGKDEWAEPMPVIADPFAASANEIKARVAEAGIVGMGGATFPSAVKLGLGNQ---HKL 158

Query: 78  HYLVVNADESEPG-TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             L++N  E EP  TC DR +MR     +++G  I + A+GA    I V     +  +SL
Sbjct: 159 EILLLNGAECEPYLTCDDR-VMREFAEQVVDGARIMAHALGAPKVIIAVEDNKPQAVDSL 217

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +A   +     ++G   +               Y  G E  L +++ G++   R      
Sbjct: 218 KAEAAKTPNVDVVGVPVQ---------------YPMGAERHLTQAVTGRETPAR---KLT 259

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVE 255
           A+VG+      V+NV +   V   +R G    S          ++ ++S G V  P  +E
Sbjct: 260 ADVGV-----VVHNVATARAVHQAVRLGRPLLS----------RVVTVSGGAVAEPKNIE 304

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIP-GGSSVPCLPAGQMRG 300
             +     EL++  CGG+      +++  P  G  +P L    ++G
Sbjct: 305 VPLGTRVSELLD-FCGGVSAAAKRIISGGPMMGQPLPSLDVAVVKG 349


>gi|315925372|ref|ZP_07921583.1| propanediol utilization protein PduS [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621273|gb|EFV01243.1| propanediol utilization protein PduS [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 456

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 26/156 (16%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y +VNA E EP    D+   R +   ++ G ++A+ A+ A    I ++  + RE ESLQ
Sbjct: 31  EYFIVNALECEPLIAVDKYCCREQSEQIVAGTLLAAAAVNAQHIVIALKKTYRREIESLQ 90

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK----KGQPRLKP 193
           AA++   AS              I +   A  Y  G+E  +++++ GK    +G P    
Sbjct: 91  AAINAAGAS--------------IELFKMAPFYPAGDEQIVVQAVTGKSIPERGLPSAVG 136

Query: 194 PFPANVGLY--------GCPTTVNNVESIAVVPTIL 221
               NVG          G P T   +  I  VP  L
Sbjct: 137 AVVDNVGTVCGIAQAAAGAPVTQKTLSVIGAVPKPL 172


>gi|323142352|ref|ZP_08077184.1| pyridine nucleotide-disulfide oxidoreductase [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413236|gb|EFY04123.1| pyridine nucleotide-disulfide oxidoreductase [Phascolarctobacterium
           sp. YIT 12067]
          Length = 668

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR G   +  +ME ++ G A    +DL+   ++N+     CA+G  AA  + 
Sbjct: 102 QTCGKCVPCRVGLAQLQNLMEDVLAGKADMHTLDLIESTAQNVANSADCAIGFEAAKMVL 161

Query: 403 GLIKNFR 409
             ++ FR
Sbjct: 162 AGLEGFR 168


>gi|167746962|ref|ZP_02419089.1| hypothetical protein ANACAC_01674 [Anaerostipes caccae DSM 14662]
 gi|167653922|gb|EDR98051.1| hypothetical protein ANACAC_01674 [Anaerostipes caccae DSM 14662]
          Length = 438

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 44/247 (17%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP---HYLVVNADESEPGTCKDRD 96
           RD ++  +K +G+ G GGAGF T +K +  PK     P    Y++VN  E EP    D  
Sbjct: 120 RDEVLAAIKDAGIVGLGGAGFPTHVKLA--PK----DPGAIEYIIVNGAECEPYITGDYR 173

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           IM   P  L+EG  I           I V       ++   A V +C             
Sbjct: 174 IMMETPEVLVEGLNIVLDLFPKAKGIIAVE----DNKKDAIAKVSDCVKG---------- 219

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I V      Y  G E +L+ +  G+     +    PA+ G       V+NV +I  
Sbjct: 220 -DARISVAELKTKYPQGAERSLIYATTGRAINSSM---LPADAGCI-----VDNVATIVA 270

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   ++ G   +           ++ +++G  +  P  +         ELIE   GG +G
Sbjct: 271 VKDAVKEGKPLFQ----------RVVTVTGDAIESPKNLLVRTGTNVSELIE-AAGGFKG 319

Query: 276 GWDNLLA 282
             + +++
Sbjct: 320 QPEKVIS 326


>gi|269120526|ref|YP_003308703.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sebaldella termitidis ATCC 33386]
 gi|268614404|gb|ACZ08772.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sebaldella termitidis ATCC 33386]
          Length = 444

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 117/283 (41%), Gaps = 46/283 (16%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
            +VN  E EP    D+ +MR + + LI+G  I +  + A    + ++ ++  E + L   
Sbjct: 33  FIVNGAECEPLLEVDKFLMREKTYELIKGMEIIAGNLKAARVVLGLKKKYKVEIKKLSET 92

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           + E      L SN +L + +D         Y  G+E  +++ + GK          PA  
Sbjct: 93  IKE------LDSNVEL-FLMD-------NFYPAGDEQIMVKDITGKS--------IPAG- 129

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
              G P  V+ V  ++ V T++    + Y     E     K  S+ G VN P  +E  + 
Sbjct: 130 ---GIPLDVDTV--VSNVGTVI----NVYEAI-EEKPVTKKYVSVLGEVNNPVMLEVPIG 179

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
            +F+E I K  GG++    N  AVI GG          M G I+  D L E      T A
Sbjct: 180 TSFEECI-KRAGGVK--IKNY-AVIEGGP---------MMGKIVHRDELAEKAVIKTTGA 226

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +I++     +IK   R      +ES   C  CR  T    R +
Sbjct: 227 LIILPEDHYVIKRKERPEAHILNESRAACIQCRMCTDMCPRYL 269


>gi|295092894|emb|CBK81985.1| electron transport complex, RnfABCDGE type, C subunit [Coprococcus
           sp. ART55/1]
          Length = 441

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 100/247 (40%), Gaps = 38/247 (15%)

Query: 31  NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90
           NV  +    R+ +   +K +G+ G GGAGF   +K S  PK   D   Y++VN  E EP 
Sbjct: 113 NVKDLSTLYREDVKEIIKEAGIVGMGGAGFPANVKLS--PK-NEDAIDYIIVNGAECEPY 169

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
              D   M  EP  LI G  I        C  ++   + I        A+++     +  
Sbjct: 170 LTSDYRRMMEEPDKLILGLEI--------CINLFDHAKGI-------IAIEDNKPEAIEL 214

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
              K+  +  I VH     Y  G E  L+ +  G+    ++    PA+ G       V+N
Sbjct: 215 LRDKVKDNDKIEVHVMKTKYPQGAERQLIYANTGRYVNSKM---LPADAG-----CIVHN 266

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKH 269
           V++I  +   +  G   Y          T++ +I+G  +  PC +   +     ELIE  
Sbjct: 267 VDTIVSIYEAVIEGRPLY----------TRIVTITGDAIENPCNLMVRIGTNCQELIEA- 315

Query: 270 CGGIRGG 276
            GG + G
Sbjct: 316 AGGFKDG 322


>gi|163816427|ref|ZP_02207791.1| hypothetical protein COPEUT_02616 [Coprococcus eutactus ATCC 27759]
 gi|158448127|gb|EDP25122.1| hypothetical protein COPEUT_02616 [Coprococcus eutactus ATCC 27759]
          Length = 441

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 100/247 (40%), Gaps = 38/247 (15%)

Query: 31  NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90
           NV  +    R+ +   +K +G+ G GGAGF   +K S  PK   D   Y++VN  E EP 
Sbjct: 113 NVKDLSSLYREDVKEIIKEAGIVGMGGAGFPANVKLS--PK-NEDAIDYIIVNGAECEPY 169

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
              D   M  EP  LI G  I        C  ++   + I        A+++     +  
Sbjct: 170 LTSDYRRMLEEPDKLILGLEI--------CINLFDHAKGI-------IAIEDNKPEAIAI 214

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
            + K+  +  I VH     Y  G E  L+ +  G+    ++    PA+ G       V+N
Sbjct: 215 LSDKVKDNDKIEVHVMKTKYPQGAERQLIYANTGRYVNSKM---LPADAG-----CIVHN 266

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKH 269
           V++I  +   +  G   YS          ++ +I+G  +  PC +         ELIE  
Sbjct: 267 VDTIVSIYEAVVEGRPLYS----------RIVTITGDAIENPCNLMVRTGTNCQELIEA- 315

Query: 270 CGGIRGG 276
            GG + G
Sbjct: 316 AGGFKDG 322


>gi|310828230|ref|YP_003960587.1| RnfC [Eubacterium limosum KIST612]
 gi|308739964|gb|ADO37624.1| RnfC [Eubacterium limosum KIST612]
          Length = 446

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 42  WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
            II+ ++ +G+ G GGA F T +K S  P    D    +++N  E EP    D  +M   
Sbjct: 128 QIIDIIRDAGIVGMGGATFPTHVKLSIPPDKTVDS---VILNGAECEPYLTADHHLMLAR 184

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           P  +++G  IA  A+G    +I V        E L+ A+ E
Sbjct: 185 PKRIVQGLRIAMRAVGVDKGYIGVESNKPNAIEKLRKAITE 225


>gi|240276237|gb|EER39749.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Ajellomyces
           capsulatus H143]
          Length = 109

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 24/42 (57%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWI 43
           L DQDRIF NLYG  G  L  +M  G W     I+ KG DW+
Sbjct: 62  LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWV 103


>gi|309389502|gb|ADO77382.1| electron transport complex, RnfABCDGE type, C subunit
           [Halanaerobium praevalens DSM 2228]
          Length = 441

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 103/254 (40%), Gaps = 48/254 (18%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           ++ +G+ G GGA F T +K +       D   Y+++N  E EP    D  +M   P +++
Sbjct: 129 IREAGIVGMGGAMFPTHVKVTIPEDKNVD---YVILNGAECEPYLTVDHRVMVERPESIV 185

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
            G      A GA  A I +      + E++ +  D C +              +I V   
Sbjct: 186 FGLKALMKASGAPKAIIGIED---NKPEAIASMEDACESEN------------NIKVQAV 230

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTILRRG 224
              Y  G E  L+E+L G     R  P    P +VG+      VNN  + A V   +R G
Sbjct: 231 ETKYPQGGEKMLIEALIG-----REVPAGGLPLDVGV-----VVNNTSTSAAVADAIRDG 280

Query: 225 ASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
              Y           +  SI+G  +N P  +   +     +L+E+  GG++   DN   V
Sbjct: 281 KPLYE----------RSISITGRGINKPQNLIFRVGTNIGDLVEE-AGGLK---DNAAKV 326

Query: 284 IPGGSSVPCLPAGQ 297
           I GG   P + A Q
Sbjct: 327 ITGG---PMMGAAQ 337


>gi|220904811|ref|YP_002480123.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869110|gb|ACL49445.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 618

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 49/101 (48%)

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G   ++V D + D++  +         ESCGQC PCR G   +   ++ L +G A+  +
Sbjct: 20  MGWGGLVVSDETVDVLDMLRAYYEGAAAESCGQCFPCRSGLKRIAERLDSLCRGKARPDD 79

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            + L E++  +     C +G  +  P+  ++ +   L+E R
Sbjct: 80  REYLQELAALVYDSARCDIGQTSPQPLLDVLAHAPHLLEAR 120


>gi|224369472|ref|YP_002603636.1| RnfC1 [Desulfobacterium autotrophicum HRM2]
 gi|223692189|gb|ACN15472.1| RnfC1 [Desulfobacterium autotrophicum HRM2]
          Length = 455

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           + M+   W ++  I +   D I   + A+G+ G GGA F T +K     K   D    L+
Sbjct: 122 EEMTSTDW-SLSTIPDYSPDEIARLIHAAGIVGLGGAAFPTHVKVMPNDKRLIDS---LL 177

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           VN  E EP    D  +M+  PH ++ G ++A  A+ A   FI +        E+L+ A
Sbjct: 178 VNGCECEPYLTCDYRLMKEAPHAIVAGALLAGRAVSAKEIFICIEDNKPEAIEALELA 235


>gi|118602191|ref|YP_903406.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567130|gb|ABL01935.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 497

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 21/142 (14%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ ++ SG+ G GGAGF T +K   + K C    H L++N  E EPG   D  +M+  P
Sbjct: 126 MIDCIQKSGIVGLGGAGFPTHVKLGKI-KQC----HTLIINGTECEPGVMCDNALMQFYP 180

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +I G  I  +  GA  A I +  +   ++ + QA +       +   N ++       
Sbjct: 181 REIIRGVEILLYICGAERAIIAIEDD---KQVAYQALL-------MFNHNDRIS------ 224

Query: 163 VHHGAGAYICGEETALLESLEG 184
           ++  +  Y  G E  L+++L G
Sbjct: 225 INQISTKYTSGAEKLLIKALLG 246


>gi|227484615|ref|ZP_03914931.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227237335|gb|EEI87350.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 451

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 39/249 (15%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPGTCKDRDIMR 99
           + I+ +VK +G+ G GGA F   +K+S       ++P   ++VN  E EP    D  IM+
Sbjct: 132 EEIVAKVKEAGIVGMGGAAFPAHVKYS------PNKPIDTVIVNGAECEPYITCDDYIMK 185

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
           + P  +I+G +    A+ A    I +        +S+  A+ E   +          +D 
Sbjct: 186 NYPLHIIKGLIQVLKAVNAKEGVIAIENNKPAAYKSMTEALAEFAKTN--------KFDG 237

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I V      Y  G+E  L+ ++  K+  P      P +VG       V+NV ++  +  
Sbjct: 238 TIKVVSLETKYPQGDEKRLINAIL-KREVPSGG--LPMDVG-----AVVSNVSTVNAIYE 289

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            L  G   Y           ++ +++G  V  P  +   +  +F++LIE+      GG +
Sbjct: 290 ALYMGKPLYE----------RILTVTGRTVKNPQNMRVRIGTSFNDLIEE-----AGGAE 334

Query: 279 NLLAVIPGG 287
            +  VI GG
Sbjct: 335 EIAKVINGG 343


>gi|157363153|ref|YP_001469920.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           lettingae TMO]
 gi|157313757|gb|ABV32856.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           lettingae TMO]
          Length = 437

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 119/280 (42%), Gaps = 56/280 (20%)

Query: 6   DRIFTNLYGLQGKSLS----DSMSRGHWDNVD-KILEK-GRDWIINEVKASGLRGRGGAG 59
           D+++   + LQGK +     +  S   W+ +D K  EK  R+ ++  VK +G+ G GGA 
Sbjct: 84  DKVY---HPLQGKPMEAVVIERTSEDDWEYLDHKDWEKLSREELLEVVKKAGIVGLGGAM 140

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +  PK    +   L++NA E EP    D  +M  +    IEG  I    +   
Sbjct: 141 FPTHVKLN-PPK--DKKIDTLIINAAECEPYLTIDHRLMLEKAEDFIEGIRIVMKILQVQ 197

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            +F+ V    +   + L++ V         GS        +I V      Y  G E  L+
Sbjct: 198 KSFVGVESNKLDAYKHLKSIV---------GSE-------EIEVKLLKTKYPQGAEKQLI 241

Query: 180 ESLEGKKGQPRLKPP---FPANVGLYGCPTTVNNVES-IAVVPTILRRGASWYSGFGREN 235
            ++ G+K       P    P +VG+      V NV++ IA+   ++ R      G     
Sbjct: 242 YAITGRKV------PVGGLPMDVGV-----VVQNVQTVIAIKHAVVDRKPLVERG----- 285

Query: 236 NRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
                  ++SG  +N P  V   +  T ++LIE   GG++
Sbjct: 286 ------LTVSGEGINKPANVIARIGTTVNQLIE-LAGGLK 318


>gi|307721746|ref|YP_003892886.1| Glutamate synthase (NADPH) [Sulfurimonas autotrophica DSM 16294]
 gi|306979839|gb|ADN09874.1| Glutamate synthase (NADPH) [Sulfurimonas autotrophica DSM 16294]
          Length = 678

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMRVM 362
           YD  ++  + +G   V + +   D+I+     +  Y+   E+CG+C P R G   +   +
Sbjct: 35  YDDHRDSKAFIGWDGVSLFNEDVDVIRLAMEYAAQYQVYSEACGRCAPGRWGGRILYDQL 94

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +++ +G  +  ++D L E+ K+++  + C +G     PI  L+ +F     E I++
Sbjct: 95  DKIARGEGEIADLDHLKEIGKSMQITSKCEIGKTVPNPILDLMTHFEETFLECINE 150


>gi|322515041|ref|ZP_08068049.1| electron transport complex protein RnfC [Actinobacillus ureae ATCC
           25976]
 gi|322118921|gb|EFX91098.1| electron transport complex protein RnfC [Actinobacillus ureae ATCC
           25976]
          Length = 604

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 64/154 (41%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L    D II +V   G+ G GGA FST  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSDQIIQKVYQYGIAGLGGAVFSTASKLSLADKRCK----LLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+     LIEG  I  + +      + +     +  +++Q A        L G
Sbjct: 188 TCDDR-LMQDYTAELIEGIRILRYVLRPEEVVLAIEDNKPKAIKAIQKA--------LKG 238

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           S+       DI V      Y  G    L++ L G
Sbjct: 239 SD-------DIHVQPIPTKYPSGASDQLVQVLTG 265


>gi|284049282|ref|YP_003399621.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Acidaminococcus fermentans DSM 20731]
 gi|283953503|gb|ADB48306.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Acidaminococcus fermentans DSM 20731]
          Length = 611

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 43/78 (55%)

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F   +SCG+C PCR G G +  ++E+++   A    I L+ + +++I   + CA+G  AA
Sbjct: 46  FCHAQSCGKCVPCRVGLGQLEVLIEQVLDRTASLDTITLIEKTARSIADSSDCAIGFEAA 105

Query: 399 WPIQGLIKNFRPLIEERI 416
             +   ++ FR   EE +
Sbjct: 106 SMVLKGVRGFREDYEEHV 123


>gi|194334122|ref|YP_002015982.1| electron transport complex, RnfABCDGE type subunit C
           [Prosthecochloris aestuarii DSM 271]
 gi|194311940|gb|ACF46335.1| electron transport complex, RnfABCDGE type, C subunit
           [Prosthecochloris aestuarii DSM 271]
          Length = 441

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 7/119 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ II ++K +G+ G GGAGF T +K S  P    D    +++N  E EP    D  +M 
Sbjct: 121 REEIIQKIKDAGIVGMGGAGFPTNVKLSPPPDKSIDT---IILNGAECEPFLTADHRLMV 177

Query: 100 HEPHTLIEGC-VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
             P  +I G  +IAS   G   +FI +      +++++        ASG+   + K  Y
Sbjct: 178 EYPKEVIAGLDIIASLFRGEAKSFIGIES---NKQDAIDTLKKHAAASGIEVVSLKTKY 233


>gi|310777823|ref|YP_003966156.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747146|gb|ADO81808.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 436

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 26  RGHWDNVDKI--LEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
           +  W  + KI  LEK  ++ ++  V+  G+ G GGA F T +K +    V  D    L++
Sbjct: 104 KEEWAELTKIQNLEKATKEELLAMVREKGIVGVGGACFPTHIKLNPPKDVAID---VLLL 160

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           N  E EP    D  +M  EPH ++EG  I +  +G   A + +      + E+++     
Sbjct: 161 NGAECEPYLNSDNRLMIEEPHKIVEGIKIINKILGISRAVVGIED---NKTEAIEKMTKA 217

Query: 143 CYASGLLGSNSKLGY 157
           C  +G+  +  K  Y
Sbjct: 218 CEGTGIEVAMLKTQY 232


>gi|323492348|ref|ZP_08097501.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG
           20546]
 gi|323313395|gb|EGA66506.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG
           20546]
          Length = 728

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 37/197 (18%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  W + +   ++  D +I +++ +G+ G GGAGF T  K     +    R   L++N
Sbjct: 120 LERETWPDFE---QRTPDELIEKIRQAGVSGMGGAGFPTAKKI----QSGLARTEILIIN 172

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           A E EP    D  +MR     +I+G  I    +      I +        ++LQ A +  
Sbjct: 173 AAECEPYITADDVLMREHADEIIKGIEIVEHILKPKLTVIGIEDNKPEAVKALQQAAE-- 230

Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVG 200
                         D DII+      Y  G E  L++ L  K+       P    PA++G
Sbjct: 231 --------------DKDIIIRVIPTKYPSGGEKQLIKILTNKEV------PNGGIPADIG 270

Query: 201 LYGCPTTVNNVESIAVV 217
           +      V NV S+  +
Sbjct: 271 IL-----VQNVGSLQAI 282


>gi|254448496|ref|ZP_05061956.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma
           proteobacterium HTCC5015]
 gi|198261879|gb|EDY86164.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma
           proteobacterium HTCC5015]
          Length = 792

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
           N ++ +G+ G GGA F + +K +  P   S + H LV+N  E EP    D+ +M      
Sbjct: 117 NRIREAGIVGLGGAAFPSAVKLNPGP---SRKIHTLVINGAECEPYITCDQTLMSERADQ 173

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           +++G  IA  A+G    +I +        E L  A+ +C
Sbjct: 174 VVQGIQIAMHALGVERCWIAIEDSMPTAHEGLSQAIAQC 212


>gi|167751022|ref|ZP_02423149.1| hypothetical protein EUBSIR_02007 [Eubacterium siraeum DSM 15702]
 gi|167655940|gb|EDS00070.1| hypothetical protein EUBSIR_02007 [Eubacterium siraeum DSM 15702]
          Length = 432

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D+V     + R+  +  V+ SG  G GGAGF T +K  F PK    +P +L++N  E EP
Sbjct: 104 DSVCPPTVENREQFLQAVRNSGSIGLGGAGFPTSLKLGFDPK--EKQPDFLIINGAECEP 161

Query: 90  GTCKDRDIMRHEPHTLIEGCVI 111
               D      E   ++EG ++
Sbjct: 162 YITSDYRCFMEEGEDVLEGVLL 183


>gi|148244308|ref|YP_001219002.1| electron transport complex protein RnfC [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326135|dbj|BAF61278.1| electron transport complex protein RnfC [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 496

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 31  NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90
           NVD  L   ++ ++  ++ SG+ G GGAGF T +K +   KV     H L++N  E EPG
Sbjct: 114 NVD-FLHYSKETLVGIIQKSGIVGMGGAGFPTHVKIN---KVLD--CHTLIINGTECEPG 167

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
              D  +M+  P  +I G  I  +  GA  A I +  +
Sbjct: 168 VMCDDALMQFYPKEIILGIEILLYICGADRAIIAIEDD 205


>gi|291556930|emb|CBL34047.1| electron transport complex, RnfABCDGE type, C subunit [Eubacterium
           siraeum V10Sc8a]
          Length = 432

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D+V     + R+  +  V+ SG  G GGAGF T +K  F PK    +P +L++N  E EP
Sbjct: 104 DSVCPPTVENREQFLQAVRNSGSIGLGGAGFPTSLKLGFDPK--EKQPDFLIINGAECEP 161

Query: 90  GTCKDRDIMRHEPHTLIEGCVI 111
               D      E   ++EG ++
Sbjct: 162 YITSDYRCFMEEGEDVLEGVLL 183


>gi|291530144|emb|CBK95729.1| electron transport complex, RnfABCDGE type, C subunit [Eubacterium
           siraeum 70/3]
          Length = 432

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D+V     + R+  +  V+ SG  G GGAGF T +K  F PK    +P +L++N  E EP
Sbjct: 104 DSVCPPTVENREQFLQAVRNSGSIGLGGAGFPTSLKLGFDPK--EKQPDFLIINGAECEP 161

Query: 90  GTCKDRDIMRHEPHTLIEGCVI 111
               D      E   ++EG ++
Sbjct: 162 YITSDYRCFMEEGEDVLEGVLL 183


>gi|317498715|ref|ZP_07957006.1| pyridine nucleotide-disulfide oxidoreductase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894009|gb|EFV16200.1| pyridine nucleotide-disulfide oxidoreductase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 610

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           +SCG+C PCR G G +  ++  ++ G A  R +  ++E +K+I     CA+G  AA  + 
Sbjct: 50  QSCGKCVPCRVGLGQLKNLITDVLDGKATIRTLTEIHETAKSIMESADCAIGYEAANMVY 109

Query: 403 GLIKNFRPLIEERIDQYHRC 422
                F+    E I  YHRC
Sbjct: 110 KGAIGFKDDYVEHI-MYHRC 128


>gi|167768514|ref|ZP_02440567.1| hypothetical protein CLOSS21_03073 [Clostridium sp. SS2/1]
 gi|167710038|gb|EDS20617.1| hypothetical protein CLOSS21_03073 [Clostridium sp. SS2/1]
 gi|291560481|emb|CBL39281.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductases [butyrate-producing bacterium SSC/2]
          Length = 610

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           +SCG+C PCR G G +  ++  ++ G A  R +  ++E +K+I     CA+G  AA  + 
Sbjct: 50  QSCGKCVPCRVGLGQLKNLITDVLDGKATIRTLTEIHETAKSIMESADCAIGYEAANMVY 109

Query: 403 GLIKNFRPLIEERIDQYHRC 422
                F+    E I  YHRC
Sbjct: 110 KGAIGFKDDYVEHI-MYHRC 128


>gi|323498079|ref|ZP_08103084.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM
           21326]
 gi|323316859|gb|EGA69865.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM
           21326]
          Length = 617

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 71/177 (40%), Gaps = 28/177 (15%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  +M+ 
Sbjct: 134 DELIEIIRQAGISGMGGAGFPTAKKI----QSGLARTDILIVNAAECEPYITADDMLMQE 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
             + +I G  I    +      I +        ++LQAA D                D D
Sbjct: 190 HANEIITGIEIVEHILKPKLTIIGIEDNKPDAVKALQAAAD----------------DKD 233

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           II+      Y  G E  L++ L  K+         PA++GL      V NV S+  +
Sbjct: 234 IIIRVIPTKYPSGGEKQLIKILTNKEVPAN---GIPADIGLM-----VQNVGSLQAI 282


>gi|308275216|emb|CBX31813.1| hypothetical protein N47_N26380 [uncultured Desulfobacterium sp.]
          Length = 228

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 49/102 (48%)

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++ M+ +  +++    L  F+ +ESCG+C PCR G   ++ ++  +V G +    ++
Sbjct: 115 SGCIMTMESNVCMVQLADYLIKFHANESCGKCVPCRLGIQRLIELISGVVSGNSPANAVE 174

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  + +  +    CA     +  I  +I NFR   E  I +
Sbjct: 175 QMQTMIRLTDQAAYCAFAGKVSKIILAIISNFREEFETHIKE 216


>gi|118594443|ref|ZP_01551790.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Methylophilales bacterium HTCC2181]
 gi|118440221|gb|EAV46848.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Methylophilales bacterium HTCC2181]
          Length = 510

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           +W  +D      R   I ++  SG+ G GGA F T +K +   +V       L+VNA E 
Sbjct: 120 NWKKID------RKETIKKISESGIVGLGGATFPTHLKLNNNNEV-----KTLIVNAAEC 168

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           EP    D  +MR +   LIEG  +A   +GA  A I
Sbjct: 169 EPYITCDDMLMREKSAELIEGIRLALHLLGAQNAII 204


>gi|158520323|ref|YP_001528193.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfococcus oleovorans Hxd3]
 gi|158509149|gb|ABW66116.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfococcus oleovorans Hxd3]
          Length = 454

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 109/265 (41%), Gaps = 48/265 (18%)

Query: 15  LQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
           L+G +L + +  G W  D  DK   K    I   + A+G+ G GGA F T +K   MP  
Sbjct: 114 LEGAALMEEILGGDWPKDAADKHDPKA---ISEAISAAGIVGLGGAAFPTHVK--IMPN- 167

Query: 73  CSDRP-HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
              RP   L++N  E EP    D  IM      +I G ++A  A+GA    + +     +
Sbjct: 168 -DKRPVDALLINGCECEPFLTPDYRIMVEAADAVICGALLAGRAVGAKQIVVGIEANKPK 226

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
             E++  A                G  V I V      Y  G E  L+ ++  +K  P  
Sbjct: 227 AVEAMTRAAQ--------------GTAVKIAVLK--TKYPQGSEKHLIMAVMKRKVPPG- 269

Query: 192 KPPFPANVGLYGCPTTVNNVES-IAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVN 249
               P  VG       V+NV + +AV   +LR+    +           ++  ++ G + 
Sbjct: 270 --KLPLEVG-----AAVSNVGTVVAVARAVLRKKPLTH-----------RVVCVTGGGIV 311

Query: 250 YPCTVEESMSITFDELIEKHCGGIR 274
            P  +   + I++ ELIE  CGG+R
Sbjct: 312 QPKNLLVPIGISYGELIE-FCGGLR 335


>gi|254446706|ref|ZP_05060181.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198256131|gb|EDY80440.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 456

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 35/194 (18%)

Query: 31  NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90
           NVD   E  +  I+  V+ +GL G GGA F T +K +  PK    + H +++N  E EP 
Sbjct: 129 NVD---EMSQQEIVKAVQETGLVGLGGAAFPTHVKLT-PPK--DHKVHTVLINGCECEPF 182

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
              D  +M  +   L+ G  I   A+ A  A I      +   E+++A            
Sbjct: 183 LTTDHRVMLEQAEDLVAGTRIFMKALNAERAIIGTENNKLDAVEAIRA------------ 230

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGCPTT 207
              KL  D  I V      Y  G E  L ++L        L+ P   +P++VGL      
Sbjct: 231 ---KLPKDGSITVQAVKTKYPQGAEKMLAKALM------NLEIPSGGYPSSVGL-----A 276

Query: 208 VNNVESIAVVPTIL 221
           V NV S A V  +L
Sbjct: 277 VFNVSSTAQVGALL 290


>gi|315651309|ref|ZP_07904337.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium
           saburreum DSM 3986]
 gi|315486461|gb|EFU76815.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium
           saburreum DSM 3986]
          Length = 448

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D I N VK +G+ G GGAGF T +K S  PK   +   Y++VN  E EP    D  +M 
Sbjct: 123 KDEIRNIVKEAGIVGLGGAGFPTHVKLS--PK-NENEIDYIIVNGAECEPYLTSDYRLMM 179

Query: 100 HEPHTLIEGCVI 111
            EP  +I G  I
Sbjct: 180 EEPEKIIGGLKI 191


>gi|261367571|ref|ZP_05980454.1| Fe(III) reductase, beta subunit [Subdoligranulum variabile DSM
           15176]
 gi|282570358|gb|EFB75893.1| Fe(III) reductase, beta subunit [Subdoligranulum variabile DSM
           15176]
          Length = 611

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR G   +  ++E ++   A +  IDL+ + +  I     CA+G +AAA  +
Sbjct: 50  QTCGKCVPCRIGLSQLETLLESVLDQTAPEGTIDLIEQTAAAIVDSADCAIGYEAAAMVL 109

Query: 402 QGLIKNFRPLIEERIDQYHRC 422
           QG ++ FR   EE    Y RC
Sbjct: 110 QG-VRGFREDYEEHA-HYGRC 128


>gi|254361779|ref|ZP_04977914.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|261494020|ref|ZP_05990523.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496221|ref|ZP_05992627.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153093314|gb|EDN74310.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|261308173|gb|EEY09470.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310186|gb|EEY11386.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 764

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           ++  L    D II +V   G+ G GGA F T  K S   K C      LV+N  E EP  
Sbjct: 132 IEDFLSLTSDQIIQKVYQYGIAGLGGAVFPTATKLSLADKRCK----LLVINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+     LIEG  I  + +      I +        ++L+ A        L G
Sbjct: 188 TCDDR-LMQDFTADLIEGIRILRYVLRPEEVVIAIEDNKPHAIQALETA--------LKG 238

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           SN       D+ V      Y  G    L++ L G
Sbjct: 239 SN-------DMFVRAIPTKYPSGASDQLIQVLTG 265


>gi|257875824|ref|ZP_05655477.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC20]
 gi|257809990|gb|EEV38810.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC20]
          Length = 445

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 131/362 (36%), Gaps = 82/362 (22%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           I  N Y      LS      +W +         + I+ +++  G+ G+GGA F T +K+S
Sbjct: 101 IIENDYAFDNDFLSTPF---NWQSA------ANETILKKIRQGGIAGKGGATFPTHVKFS 151

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                 + + H L++N  E EP    D  +M+ E   +I+G  IA   +      I +  
Sbjct: 152 IDE---NKKIHTLILNGSECEPFLRSDAFLMQKEAKKIIQGAKIAQKLLADPKIIIGIED 208

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           +      ++QAA  E               D  I V      Y  G E  L+E L  ++ 
Sbjct: 209 DKPLAISAMQAASAE---------------DDTIEVVTVPTVYPTGGEKQLVELLTDQEV 253

Query: 188 QPRLKPP---FPANVG--LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
                 P     A++G  L    T+    E++     ++ R    Y+             
Sbjct: 254 ------PLGGLTADIGIVLINVATSFAIAEAVCYDKPLIER----YT------------- 290

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP-GGSSVPCLPAGQMRGA 301
           +++G V +P  V+  +     ELI+   GG +G    L+   P  G SV  L     +  
Sbjct: 291 TVTGDVQHPRIVKNPLGTLAGELID-FAGGFQGAPSKLILGGPMMGKSVKTLKVPVTK-- 347

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
                         G+  ++V +  TD     W     Y    C +C  C E    ++  
Sbjct: 348 --------------GSNGIVVFNEETD-----W----LYAENPCIRCNKCVEACPMLLMP 384

Query: 362 ME 363
           ME
Sbjct: 385 ME 386


>gi|227498966|ref|ZP_03929103.1| pyridine nucleotide-disulphide oxidoreductase [Acidaminococcus sp.
           D21]
 gi|226904415|gb|EEH90333.1| pyridine nucleotide-disulphide oxidoreductase [Acidaminococcus sp.
           D21]
          Length = 611

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR G G +  ++E ++   A    ID +   +K I     CA+G  AA  + 
Sbjct: 50  QTCGKCVPCRIGLGQLATLIESVMNRTATLETIDRIERTAKVIADSADCAIGYEAAVMVL 109

Query: 403 GLIKNFRPLIEERI 416
             +K FR   EE I
Sbjct: 110 KGVKGFRDDYEEHI 123


>gi|139438950|ref|ZP_01772410.1| Hypothetical protein COLAER_01416 [Collinsella aerofaciens ATCC
           25986]
 gi|133775661|gb|EBA39481.1| Hypothetical protein COLAER_01416 [Collinsella aerofaciens ATCC
           25986]
          Length = 615

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           +SCG+CTPCR G   +  ++  +++G A +  ++L+   ++ I   + CA+G  A     
Sbjct: 55  QSCGKCTPCRVGLSALSDLLADVLEGRADESTLNLIERTARTIYLSSDCAIGYEAGAMAL 114

Query: 403 GLIKNFRPLIEERIDQYHRCNF 424
             I+ FR   E  I + H C F
Sbjct: 115 TAIRGFRDDFEHHIRE-HSCGF 135


>gi|27904613|ref|NP_777739.1| electron transport complex protein RnfC [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
 gi|46396891|sp|Q89AW8|RNFC_BUCBP RecName: Full=Electron transport complex protein rnfC
 gi|27904010|gb|AAO26844.1| electron transport complex protein RnfC [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 505

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +IN +  SG+ G  G+GFST  K     +    + H LVVNA ESEP    D  ++++  
Sbjct: 148 LINLIYHSGILGLSGSGFSTSKKL----QCAVGKVHTLVVNAVESEPCVTSDDCLIQNFS 203

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
             +I+GC I  + +      I V  E I     L+ +V       LL   +K
Sbjct: 204 KEIIDGCKILIWILKIKKILIVVSEEKIIAFNVLKKSVINLKDFELLKVKNK 255


>gi|269468925|gb|EEZ80509.1| electron transport complex protein RnfC [uncultured SUP05 cluster
           bacterium]
          Length = 502

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 88/214 (41%), Gaps = 37/214 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  ++ SG+ G GGAGF T  K +      +   H L++N  E EPG   D  +M++ P
Sbjct: 127 MIEYIRISGIVGLGGAGFPTHTKVAR-----AQDCHTLIINGTECEPGVMCDDALMQYYP 181

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD-- 160
             +I G  I     GA  A I V  +   ++E+                NS L Y+ +  
Sbjct: 182 REVIRGVEILLHICGASRAIIAVEND---KQEAF---------------NSLLMYNHNER 223

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGCPTTVNNVESIAVV 217
           I + H    Y  G E  L+++L G      ++ P   F  ++G+             AVV
Sbjct: 224 ISIVHIPTKYTSGAEKLLIKALLG------VEVPSGGFAPDLGVVCQNVATTKAIFDAVV 277

Query: 218 ---PTILRRGASWYSGFGRENNRGTKLFSISGHV 248
              P + R      SG  + NN   +L S   HV
Sbjct: 278 ESKPLVSRIVTVTGSGVEKPNNFEVRLGSSFDHV 311


>gi|255524099|ref|ZP_05391060.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|296188445|ref|ZP_06856833.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255512236|gb|EET88515.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|296046709|gb|EFG86155.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 442

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 38/198 (19%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y +VN  E EP    D+ +MR++   +++       AIGA    I ++ E+  E ++L+
Sbjct: 31  EYFIVNGLECEPLLQSDKYMMRNKSDEIVQAVEEIGKAIGAKHLVIGLKEEYRDEIQALK 90

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--F 195
            ++++              ++  I +H     Y  G+E  L+  + G     R  PP   
Sbjct: 91  NSIEK--------------FNSKIKLHLSRAFYPAGDEQVLVYEVTG-----RTIPPAGI 131

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P NVG       V+N  +I  +   ++  A  Y           K  ++ G V  P  V+
Sbjct: 132 PLNVG-----AVVSNSGTILNIFEAMQDKAVTY-----------KFVTVIGEVAKPSIVK 175

Query: 256 ESMSITFDELIEKHCGGI 273
             +     E++EK CGG+
Sbjct: 176 VPIGTKVKEVLEK-CGGV 192


>gi|206891092|ref|YP_002249519.1| F420-non-reducing hydrogenase vhc iron-sulfur subunit D
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743030|gb|ACI22087.1| F420-non-reducing hydrogenase vhc iron-sulfur subunit D
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 274

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 54/114 (47%)

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+  L    + +G+A  +  +    + + I     + +  SC +C PCR GT  M  ++
Sbjct: 141 IDWQTLSRTVATVGSAGKLFWEEDKCMAEMIDFFLSYAQENSCAECIPCRIGTKRMQEMV 200

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +++  G    RE+ LL   + +I   + C LG  A   ++  +++ +  IE  +
Sbjct: 201 KKIFDGSISTRELSLLEYFADDIGASSKCDLGLMAGKAVKFALQHCKSDIEAHL 254


>gi|160946965|ref|ZP_02094168.1| hypothetical protein PEPMIC_00927 [Parvimonas micra ATCC 33270]
 gi|158447349|gb|EDP24344.1| hypothetical protein PEPMIC_00927 [Parvimonas micra ATCC 33270]
          Length = 444

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+ +K +G+ G GGAGF T +K +      +D   Y+++N  E EP    D+ +M   P
Sbjct: 127 IIDAIKEAGIVGLGGAGFPTHVKLTAREGQITD---YIIINCAECEPYLTSDQLMMELYP 183

Query: 103 HTLIEGCVIASFAIGA 118
             ++ G ++A  A+GA
Sbjct: 184 EKVVMGLLLAMKAMGA 199


>gi|330997032|ref|ZP_08320894.1| electron transport complex, RnfABCDGE type, C subunit
           [Paraprevotella xylaniphila YIT 11841]
 gi|329571530|gb|EGG53212.1| electron transport complex, RnfABCDGE type, C subunit
           [Paraprevotella xylaniphila YIT 11841]
          Length = 447

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 48/265 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+N VKA+G+ G GGA F   +K +  PK    +   +++NA E EP    D  ++  +P
Sbjct: 128 IVNTVKAAGIVGMGGATFPCHVKLT-PPK--GTKAECVIINAVECEPYLTADHRLLLEKP 184

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++ G  +   A+G    +I +               ++  A  LL   +K    ++++
Sbjct: 185 DEILVGVDLIMKAVGVDKGYIGIEN-------------NKPDAIALLTEKAKAYPHIEVV 231

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
                  Y  G E  L+ ++ G++      P  P NVG       V NV ++  +     
Sbjct: 232 PLQ--VKYPQGGEKQLIAAVTGREVP--APPALPINVG-----AVVQNVGTVFAI----- 277

Query: 223 RGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
                Y    +      ++ +++G  V  P  +   +    ++LIE  CGG+    +N  
Sbjct: 278 -----YEAVMKNKPLFERVITVTGKEVQNPSNLLARIGTPMNQLIE-ECGGLP---ENTG 328

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYD 306
            VI GG          M  A+M+ D
Sbjct: 329 KVIGGGP--------MMGKALMNLD 345


>gi|300727611|ref|ZP_07061000.1| electron transport complex protein RnfC [Prevotella bryantii B14]
 gi|299775131|gb|EFI71734.1| electron transport complex protein RnfC [Prevotella bryantii B14]
          Length = 472

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 37/247 (14%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+N VK +G+ G GGAGF T +K    P   + +  ++++NA E EP    D  
Sbjct: 125 ELTSEEIVNRVKVAGVTGMGGAGFPTFIKLCPPP---TAKAEFVIINAVECEPYITSDYR 181

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M      ++ G  +   A      FI +      + E+++   + C            G
Sbjct: 182 LMMEHADEILVGVELLMKAAKVDKGFIGIEE---NKPEAIRLLTELC--------KEHAG 230

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            +V  +       Y  G E  L++++ G+  Q    P  P NVG       V NV +   
Sbjct: 231 IEVVPL----KTKYPQGGEKQLVDAVVGR--QVPAPPAIPVNVG-----AIVQNVGTAYA 279

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           V          Y    +      +  +++G H+  P      M     +LIE  CGG+  
Sbjct: 280 V----------YQAVMKNKPLFERYTTVTGKHIKNPSNFLVRMGTPMSQLIEA-CGGLPD 328

Query: 276 GWDNLLA 282
             + +LA
Sbjct: 329 DDNKVLA 335


>gi|90408374|ref|ZP_01216537.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3]
 gi|90310537|gb|EAS38659.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3]
          Length = 839

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 24/169 (14%)

Query: 21  SDSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +D++ R  + N++K L   ++   ++I+E++ +G+ G GGAGF T +K         +  
Sbjct: 120 TDALDR--YINIEKPLPYWQQSSHFLIDEIQKAGIVGLGGAGFPTHLKLK-----GHEAT 172

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             L++NA E EP    D  +M+   + +I G  +    +      I +     +  E+L 
Sbjct: 173 QLLLINAAECEPYISADDRLMQEHANEIIAGINVLQHILNPKLTIIAIEDNKPQAIEALT 232

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
            A+           N+   +   II+      Y  G E  L+E + GK+
Sbjct: 233 EAL-----------NTTKNH---IIIRKIPTLYPSGSEKQLIEIITGKQ 267


>gi|78485378|ref|YP_391303.1| electron transport complex, RnfABCDGE type, C subunit
           [Thiomicrospira crunogena XCL-2]
 gi|78363664|gb|ABB41629.1| NADH oxidoreductase, RnfABCDGE type, C subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 704

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 104/267 (38%), Gaps = 44/267 (16%)

Query: 5   QDRIFTNLYGLQGKSL---SDSMSRGHWDN--VDKILEKGRDWIINEVKASGLRGRGGAG 59
           + R   +  GL G S+   SD   +   ++  VD       D +   V  +G+ G GGAG
Sbjct: 109 EPRTLPHASGLSGLSIVLESDQKDQAIENSLEVDGATPGTPDKLKALVHKAGIVGMGGAG 168

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K    P     +  YL++N  E EP    D  +M+     +++G +I + ++G  
Sbjct: 169 FPTFAKIPSQP----GQIKYLLINGAECEPFITCDDMLMQTRAEDIVQGAMIVAQSLGIK 224

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
                +     +  +++Q                K   D D+ ++  A AY  G +T L 
Sbjct: 225 HILCGIEDNKAKAIKAMQ----------------KAAKDTDVQINVVATAYPMGGQTQLT 268

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G +         PA+         + NV + A +          Y    + N   +
Sbjct: 269 QELTGIE--------LPAHTHAIDVGVLMMNVATFAAI----------YQAVVQGNPLTS 310

Query: 240 KLFSISGH-VNYPCTVEESMSITFDEL 265
           +  ++SG  +N P  ++  +  +F EL
Sbjct: 311 RYITVSGLGLNKPFNIDARLGTSFKEL 337


>gi|153939908|ref|YP_001392933.1| respiratory-chain NADH dehydrogenase family protein [Clostridium
           botulinum F str. Langeland]
 gi|152935804|gb|ABS41302.1| respiratory-chain NADH dehydrogenase family protein [Clostridium
           botulinum F str. Langeland]
 gi|295320911|gb|ADG01289.1| respiratory-chain NADH dehydrogenase family protein [Clostridium
           botulinum F str. 230613]
          Length = 428

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 103/248 (41%), Gaps = 37/248 (14%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K+LE   + I++ ++A+G+ G GGAGF T +K        +     ++ NA E EP    
Sbjct: 72  KLLESSNN-ILDLIQAAGIVGMGGAGFPTHIKMDV-----NLNGGVVIANAVECEPLLAH 125

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           + + + +EP  + +G   A  A+ A      ++ + +    SL+  +             
Sbjct: 126 NINQIINEPELIYKGLCYAMEAVNASKGVFAIKSKNVEAISSLKNVIK------------ 173

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
               D ++ +      Y  GEE A++  + GK   P  + P  AN  +    T     E+
Sbjct: 174 ----DSNVKIVELPYMYPMGEERAIIREVLGKLLDPS-QLPLEANAVVSNVETLAKIAEA 228

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           + +   ++ +  +       +N   +++F     +N P      +  T  ELIE   GGI
Sbjct: 229 VELKKPVISKNITVVGKL--KNGLESQVF-----INVP------IGTTVKELIEA-AGGI 274

Query: 274 RGGWDNLL 281
            G +  ++
Sbjct: 275 DGEYGEII 282


>gi|331091676|ref|ZP_08340510.1| hypothetical protein HMPREF9477_01153 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403433|gb|EGG82992.1| hypothetical protein HMPREF9477_01153 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 438

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 117/282 (41%), Gaps = 50/282 (17%)

Query: 8   IFTNLYGLQGKSLSDSM----SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           IF+++YG   + L D +         +  +KI E  +   ++ VKA+G+ G GGAGF TG
Sbjct: 42  IFSSVYGEVTEVLEDRIVIRPDEVQSEEFEKIEEGSK---LDMVKAAGIVGMGGAGFPTG 98

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +K          +  Y+++NA E EPG   +   +  E   +I G         A  A  
Sbjct: 99  VKIG-----TDLQGGYILINAAECEPGLRHNIQQIEEECDKVIRGVKYTMEISNAAKAIF 153

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
            ++ +  +  ++L+ A+ +  A               I +H     Y  GEE A++    
Sbjct: 154 AIKKKNEKAVQTLKEALKDEEA---------------ISIHLLPDIYPMGEERAVVRECL 198

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G + +P   P    ++        V NVE++A +   +      +S          K  +
Sbjct: 199 GIELKPEELPSVAKSI--------VINVETLARITEAIEERKPCFS----------KNLT 240

Query: 244 ISGHV---NYPCTVEE-SMSITFDELIEKHCGGIRGGWDNLL 281
           + G +   N P   ++  +  +  ELIE+  GGI G +  ++
Sbjct: 241 VIGKLNGGNEPHVFKDVPVGTSVAELIER-AGGIDGEYGEII 281


>gi|229826588|ref|ZP_04452657.1| hypothetical protein GCWU000182_01963 [Abiotrophia defectiva ATCC
           49176]
 gi|229789458|gb|EEP25572.1| hypothetical protein GCWU000182_01963 [Abiotrophia defectiva ATCC
           49176]
          Length = 609

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
            DI +A   +      ++CG+C PCR G   +  +M  ++ G A    I L+ E +K+I 
Sbjct: 37  VDITRAFIEMC---HAQTCGKCVPCRVGLLHLKHLMTTVLNGNATMDIIPLIEETAKSIS 93

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
               CA+G  AA  +   +   R   EE I +  RCN Q
Sbjct: 94  ETADCAIGYEAANMVYKAVTTCRDDFEEHI-RNGRCNCQ 131


>gi|94498904|ref|ZP_01305442.1| electron transport complex protein RnfC [Oceanobacter sp. RED65]
 gi|94428536|gb|EAT13508.1| electron transport complex protein RnfC [Oceanobacter sp. RED65]
          Length = 727

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +D  LE  RD +I+ ++ SG+ G GGA F T +K      V  +R   L++NA E EP  
Sbjct: 120 LDNPLETDRDTLIDIIQQSGITGLGGASFPTHVKTC----VPEERIDTLILNAAECEPYI 175

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
             D  +MR     L++G  +           I +        E+LQ A+D
Sbjct: 176 TADDMLMRSYADGLVKGIELLFHLYQPEKCLIGIEDNKPEAIEALQKALD 225


>gi|281357469|ref|ZP_06243957.1| electron transport complex, RnfABCDGE type, C subunit [Victivallis
           vadensis ATCC BAA-548]
 gi|281316072|gb|EFB00098.1| electron transport complex, RnfABCDGE type, C subunit [Victivallis
           vadensis ATCC BAA-548]
          Length = 440

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           H  +V ++L++  D        +GL G GGA F T +K S  P    D    L++N  E 
Sbjct: 121 HKADVKELLKRTAD--------AGLVGMGGAAFPTHVKLSPPPDKTID---TLILNGAEC 169

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           EP    D  +M  +P  ++EG  I++  +     +I V    I   E+L
Sbjct: 170 EPYLTADHRLMLEQPERVLEGAAISAKILNVKNVYIGVEANKIDAIEAL 218


>gi|317497311|ref|ZP_07955634.1| electron transport complex [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895380|gb|EFV17539.1| electron transport complex [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 438

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  +K +G+ G GGAGF T +K +  PK   D   Y++VN  E EP    D  I+ 
Sbjct: 120 KDDVLAAIKEAGIVGLGGAGFPTHVKLA--PK-DPDAIEYIIVNGAECEPYITGDYRILM 176

Query: 100 HEPHTLIEGCVI 111
             P  LIEG  I
Sbjct: 177 ETPELLIEGLNI 188


>gi|170761255|ref|YP_001788921.1| respiratory-chain NADH dehydrogenase family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408244|gb|ACA56655.1| respiratory-chain NADH dehydrogenase family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 428

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 98/241 (40%), Gaps = 36/241 (14%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I++ ++A+G+ G GGAGF T +K              ++ NA E EP    + + + +
Sbjct: 78  NNILDLIQAAGIVGMGGAGFPTHIKMDV-----DLNGGVVIANAVECEPLLAHNINQIIN 132

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           EP  + +G   A  A+ A      ++ + +    SL+  +                 D +
Sbjct: 133 EPELIYKGLCYAMKAVNASKGIFAIKSKNVEAISSLKNVIK----------------DTN 176

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +      Y  GEE A++  + GK   P  + P  AN  +    T     E++ +   +
Sbjct: 177 IEIVKLPDMYPMGEERAIIREVLGKLLDPS-QLPLEANAVVSNVETLAKIAEAVELKKPV 235

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + +  +       +N   +++F     +N P      +  T  ELIE   GGI G +  +
Sbjct: 236 ISKNITVVGKL--KNGLESQVF-----INVP------IGTTVRELIEA-AGGIDGEYGEI 281

Query: 281 L 281
           +
Sbjct: 282 I 282


>gi|291559406|emb|CBL38206.1| electron transport complex, RnfABCDGE type, C subunit
           [butyrate-producing bacterium SSC/2]
          Length = 438

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  +K +G+ G GGAGF T +K +  PK   D   Y++VN  E EP    D  I+ 
Sbjct: 120 KDDVLAAIKEAGIVGLGGAGFPTHVKLA--PK-DPDAIEYIIVNGAECEPYITGDYRILM 176

Query: 100 HEPHTLIEGCVI 111
             P  LIEG  I
Sbjct: 177 ETPELLIEGLNI 188


>gi|148265660|ref|YP_001232366.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter uraniireducens Rf4]
 gi|146399160|gb|ABQ27793.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Geobacter uraniireducens Rf4]
          Length = 672

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 14/112 (12%)

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDI----IKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           YDG + M + +G   +IV ++  D+     + + R+   Y    CG+CTP ++GT  +M 
Sbjct: 33  YDGERPMAAFMGWDGIIVFNKDVDVPVMAAEYMRRVQTLY---CCGKCTPGKKGTRVLMD 89

Query: 361 VMERLVKGIAQKRE---IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            +  ++ G A + +   I+ L ++ KN +    C L  ++  P+   +K FR
Sbjct: 90  ALAAIIAGKASEADLATIEDLADLLKNCK----CTLCQSSTVPVLDAVKYFR 137


>gi|297539546|ref|YP_003675315.1| RnfABCDGE type electron transport complex subunit C [Methylotenera
           sp. 301]
 gi|297258893|gb|ADI30738.1| electron transport complex, RnfABCDGE type, C subunit
           [Methylotenera sp. 301]
          Length = 640

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 9/107 (8%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           GK     +    W N DK L      +++ +++SG+ G GGA F T +K     K     
Sbjct: 123 GKDTWTQLQPAGWRNADKKL------LVDSLRSSGIVGLGGATFPTHIKLRTNGK---SN 173

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            H LV+NA E EP    D  +MR     +I+G  I    +GA    I
Sbjct: 174 VHTLVINAAECEPYITCDDMLMRERSDQVIKGIEIVQHLLGAEKCII 220


>gi|325662494|ref|ZP_08151097.1| hypothetical protein HMPREF0490_01837 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086276|ref|ZP_08335356.1| hypothetical protein HMPREF0987_01659 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471190|gb|EGC74415.1| hypothetical protein HMPREF0490_01837 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406042|gb|EGG85565.1| hypothetical protein HMPREF0987_01659 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 610

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 5/93 (5%)

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
            DI +A   L      ++CG+C PCR G G +  ++  ++ G A  + +DL+ +++ +I 
Sbjct: 37  VDISRAFLELC---HAQTCGKCVPCRIGLGQLKNLITDVLDGKATLKTLDLMEDLALSIM 93

Query: 387 GRTICALG-DAAAWPIQGLIKNFRPLIEERIDQ 418
               CA+G +AA    +GLI  +R   EE I Q
Sbjct: 94  DSADCAIGYEAAHMVYKGLI-GYREDYEEHIRQ 125


>gi|289208953|ref|YP_003461019.1| electron transporter subunit C [Thioalkalivibrio sp. K90mix]
 gi|288944584|gb|ADC72283.1| electron transport complex, RnfABCDGE type, C subunit
           [Thioalkalivibrio sp. K90mix]
          Length = 541

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 27  GHWDNVDKILEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           GH D  D  +E   DW       +   ++A G+ G GGA F T +K +  P+    R H 
Sbjct: 105 GHDDWGDARMEPWLDWDTRDLRALRQRLRAGGIVGLGGAAFPTAVKLN--PRA-GQRIHT 161

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           LVVN  E EP    D  ++R  P  + EG  I +  +G       V         SL
Sbjct: 162 LVVNGAECEPYISADDMLLRTAPEAVFEGIRITARLLGVERVLFAVEDNMPEAMRSL 218


>gi|167767284|ref|ZP_02439337.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1]
 gi|167711259|gb|EDS21838.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1]
          Length = 450

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  +K +G+ G GGAGF T +K +  PK   D   Y++VN  E EP    D  I+ 
Sbjct: 132 KDDVLAAIKEAGIVGLGGAGFPTHVKLA--PK-DPDAIEYIIVNGAECEPYITGDYRILM 188

Query: 100 HEPHTLIEGCVI 111
             P  LIEG  I
Sbjct: 189 ETPELLIEGLNI 200


>gi|253699315|ref|YP_003020504.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter sp. M21]
 gi|251774165|gb|ACT16746.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter sp. M21]
          Length = 670

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 61/109 (55%), Gaps = 4/109 (3%)

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDI--IKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           + YDG + + + +G   +I+ ++  DI  + A +   V  K+  CG+CTP ++GT  MM 
Sbjct: 31  VSYDGERPLSAFIGWDGIILYNKDVDIPAMVAEYMKRVQTKY-VCGKCTPGKKGTRVMMD 89

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            +  +V+G   ++++D + ++ + ++    C L  +++ P+   + +FR
Sbjct: 90  ALAAIVEGRGSEKDLDTILDLGEVLK-HCKCTLCPSSSVPVIDAVTHFR 137


>gi|189423729|ref|YP_001950906.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter lovleyi SZ]
 gi|189419988|gb|ACD94386.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter lovleyi SZ]
          Length = 672

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI----IKAIWRLSVFYKHESCGQCT 349
           PA       + +DG + + + +G   +IV D+  D+     + + R+   Y    CG+CT
Sbjct: 23  PAAASYRLPVAFDGQQPLRAFMGWDGIIVFDKDVDVPAMAAEYMQRVQTMY---CCGKCT 79

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           P ++GT  +  ++++++KG A+  ++D + +++  ++    C L  ++  P+   +  +R
Sbjct: 80  PGKKGTKVLADLLQKVIKGEAKPGDLDQVADLNALLQN-CKCTLCPSSTKPVLDAVTYYR 138

Query: 410 PLIEERID 417
              E   D
Sbjct: 139 ADFEALCD 146


>gi|304440541|ref|ZP_07400428.1| Fe(III) reductase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371019|gb|EFM24638.1| Fe(III) reductase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 610

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR G   + ++++ ++ G A    +D++ + +      + CA+G +AA    
Sbjct: 50  QTCGKCVPCRVGLAQLAKLIKDVLDGNATLETLDVIEQTALTAMESSDCAIGYEAANMVY 109

Query: 402 QGLIKNFRPLIEERIDQYHRCNF 424
           +GLI  FR   EE I  + RCNF
Sbjct: 110 KGLI-GFRDDYEEHI-LHGRCNF 130


>gi|78224216|ref|YP_385963.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter metallireducens GS-15]
 gi|78195471|gb|ABB33238.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Geobacter metallireducens GS-15]
          Length = 672

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 8/108 (7%)

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDI----IKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           DG + + + +G   +IV D+  D+     + + R+   Y    CG+CTP ++GT  +M  
Sbjct: 34  DGDRALAAFMGWDGIIVFDKGVDVPAMAAEYMKRVQTLY---CCGKCTPGKKGTRVLMDA 90

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +  +V+G   + ++D + ++  ++     C L  ++  P+   +K+FR
Sbjct: 91  LAAIVEGRGTEAQLDTIADLG-DLLANCKCTLCQSSTVPVIDAVKHFR 137


>gi|291550297|emb|CBL26559.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           torques L2-14]
          Length = 439

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 54/120 (45%), Gaps = 17/120 (14%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            ++ V  + E  R+ IIN++  +G+ G GGAGF T +K S  PK   D+  Y++ N  E 
Sbjct: 109 EYEPVKPLEEMTREEIINKIGDAGIVGMGGAGFPTKVKLS--PKE-PDKIEYIIANCAEC 165

Query: 88  EPGTCKDRDIMRHEPHTLIEGC-VIASFAIGAHCAFIYVRGEFIRER------ESLQAAV 140
           EP    D   M      L+ G  VI S        F   RG F  E       E LQ AV
Sbjct: 166 EPYITADYRRMLEYTEDLVSGMKVILSL-------FPNARGVFAVEDNKKDCIEKLQKAV 218


>gi|146279225|ref|YP_001169383.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557466|gb|ABP72078.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 519

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 99/246 (40%), Gaps = 45/246 (18%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99
           + I  +V  +G+ G GGA F + +K +   +      H LV+N  E EP  TC DR +MR
Sbjct: 136 EEIAAKVAEAGIVGMGGATFPSAVKLNLRARYDL---HTLVINGAECEPYLTCDDR-LMR 191

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDECYASGLLGSNSKLG 156
                + +G  I + A+G     + +   + E I   +    A+D             L 
Sbjct: 192 ERAEEIADGIGIMARALGVRQIVVAIESNKAEAISAMQRFDRALD-------------LP 238

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
             V ++       Y  G E  L++ L G++   R      A++G+      V+N  +   
Sbjct: 239 MRVQVVPTQ----YPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHA 286

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +R G    S          ++ ++SG  +  P  V   +     E+I  HCGG+  
Sbjct: 287 VHLAVRYGEPLLS----------RVVTVSGRGIRRPANVRVLIGTPVAEVI-AHCGGLTE 335

Query: 276 GWDNLL 281
             D LL
Sbjct: 336 EPDRLL 341


>gi|325263576|ref|ZP_08130310.1| PduS protein [Clostridium sp. D5]
 gi|324031285|gb|EGB92566.1| PduS protein [Clostridium sp. D5]
          Length = 450

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 115/310 (37%), Gaps = 60/310 (19%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           ++ +G+ G GGAGF T  K         +R   +++N  E EP     R ++      ++
Sbjct: 11  LQLNGIVGAGGAGFPTYAKLD-------ERAETIILNCAECEPLLRLHRQLLEKYAQEIV 63

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
           E   +   A+GA    I ++  + +  E+L+  + E Y    LG   ++           
Sbjct: 64  ETFHMMGQAVGAKDVVIGIKKAYKKTIEALEEVIGE-YPEVRLGLLDEV----------- 111

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
              Y  G+E  L+  + GK  +P    P  + V ++       NVE++  V         
Sbjct: 112 ---YPAGDEVVLIYEVTGKVVRPG-GIPIESGVAVF-------NVETVYNV--------- 151

Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
            Y    ++     KL SI   V +P TV   +  T +E +                    
Sbjct: 152 -YRAVNQQAPVTDKLVSIVAEVEHPVTVRVPIGTTIEETVRL-----------------A 193

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES-- 344
           G+     P   + G +M + G         T AV+V+     II+   R S      +  
Sbjct: 194 GNVTAKDPVYFIGGPMMGFIGSGSQPVTKTTNAVLVLPEEHLIIQKKRRKSSIDLKRAAA 253

Query: 345 -CGQCTPCRE 353
            C QCT C +
Sbjct: 254 CCCQCTMCTD 263


>gi|42527102|ref|NP_972200.1| putative glutamate synthase (NADPH) small subunit [Treponema
           denticola ATCC 35405]
 gi|41817526|gb|AAS12111.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Treponema denticola ATCC 35405]
          Length = 609

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR G   +  ++  ++ G +  + +DL+ E +K+I     CALG  AA  + 
Sbjct: 50  QTCGKCAPCRIGLLQLKHILTDVLNGKSTMKTLDLIEETAKSIRETADCALGYEAADMVY 109

Query: 403 GLIKNFRPLIEERIDQYHRC 422
             I   R   EE I ++ RC
Sbjct: 110 KSIIYCRDDFEEHI-KHGRC 128


>gi|325474149|gb|EGC77337.1| pyridine nucleotide-disulfide oxidoreductase [Treponema denticola
           F0402]
          Length = 609

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR G   +  ++  ++ G +  + +DL+ E +K+I     CALG  AA  + 
Sbjct: 50  QTCGKCAPCRIGLLQLKHILTDVLNGKSTMKTLDLIEETAKSIRETADCALGYEAADMVY 109

Query: 403 GLIKNFRPLIEERIDQYHRC 422
             I   R   EE I ++ RC
Sbjct: 110 KSIIYCRDDFEEHI-KHGRC 128


>gi|326791176|ref|YP_004308997.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           lentocellum DSM 5427]
 gi|326541940|gb|ADZ83799.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           lentocellum DSM 5427]
          Length = 439

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 114/294 (38%), Gaps = 65/294 (22%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ++ + D ++    G+   + SD      + N+ K      + +I  VK +GL G GGA F
Sbjct: 97  IVIENDNLYEETPGMATSAKSD------YKNLTK------EELIGLVKEAGLVGMGGATF 144

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T +K S  P        Y+++N  E EP    D  +M      +IEG            
Sbjct: 145 PTHVKLSTPP---DKTVEYIIINGAECEPYLTSDHRVMLENGEEVIEG------------ 189

Query: 121 AFIYVRGEFIRERESL----QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEET 176
             I +  E  +E +++       +D      +L  N++    V +        Y  G E 
Sbjct: 190 --IKILLEVYKEAKAIIGIENNKMDAIKQMKMLAKNTERLEVVTL-----DTKYPQGSEK 242

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
            L+ ++  K+  P  K P        GC   V N++S+  V   + +G            
Sbjct: 243 HLIYAIT-KREVPSGKLPID-----IGC--IVQNIDSMVAVCRAVTKGQPVMR------- 287

Query: 237 RGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD--NLLAVIPGG 287
              ++ ++SG  V  PC VE  +  +F E++E         WD    + +I GG
Sbjct: 288 ---RIVTVSGSGVKKPCNVEVKVGTSFKEVLE------YAEWDMERTVKIIAGG 332


>gi|227499954|ref|ZP_03930047.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus
           tetradius ATCC 35098]
 gi|227218063|gb|EEI83336.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus
           tetradius ATCC 35098]
          Length = 441

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 9/113 (7%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           DNVD   E+    I+ ++K +G+ G GGA F   +K+  MP   + +   ++VN  E EP
Sbjct: 116 DNVDLSAEE----IVAKIKEAGIVGMGGAAFPAHIKY--MP---AKKVDTVIVNGAECEP 166

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
               D  +M++ P  +++G   A  A+ A    + +     +  ES+  A+ E
Sbjct: 167 YITCDDYLMKNRPQRILKGLTQAIKAVNADRGIVAIEDNKPKAYESMTKALAE 219


>gi|254457413|ref|ZP_05070841.1| formate dehydrogenase, beta subunit [Campylobacterales bacterium GD
           1]
 gi|207086205|gb|EDZ63489.1| formate dehydrogenase, beta subunit [Campylobacterales bacterium GD
           1]
          Length = 664

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 2/106 (1%)

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMRVM 362
           YD  ++  + +G   V + +   D+I+     +  Y+   E+CG+C P R G   +   +
Sbjct: 35  YDDHRDSKAFIGWDGVSLFNEDVDVIRLAMEYAAQYQVYSEACGRCAPGRWGGRILYDQL 94

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +++ +G     ++D L E+ K+++  + C +G     PI  L+ +F
Sbjct: 95  DKIARGEGAIADMDHLKEIGKSMQITSKCEIGKTVPNPIIDLMTHF 140


>gi|90022046|ref|YP_527873.1| electron transport complex protein RnfC [Saccharophagus degradans
           2-40]
 gi|89951646|gb|ABD81661.1| serine/threonine protein kinase [Saccharophagus degradans 2-40]
          Length = 745

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 24/187 (12%)

Query: 5   QDRIFTNLYGLQGKSL---SDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +DR+ T+  G+  + +    D   R    D  +   +   D ++ +++A+G+ G GGAGF
Sbjct: 85  EDRVVTHPSGMSAQCIIIKPDGEDRWTQLDACEDYAQLDHDRLVQKIRAAGIVGMGGAGF 144

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC-VIASFAIGAH 119
            T +K +  PK  +     L+ N  E EP    D  +MR     +++G  +IA F     
Sbjct: 145 PTAIKVN--PK-SNKHVKTLIFNGTECEPYITADDMLMRERADDIVKGVQLIARFMGEVE 201

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         ++Q A +              G D++++V      Y  G E  L+
Sbjct: 202 ETLIGIEDNKPEAIAAMQKAAE--------------GTDIEVVVF--PTKYPSGGEKQLI 245

Query: 180 ESLEGKK 186
           + L GK+
Sbjct: 246 QILTGKE 252


>gi|19704917|ref|NP_602412.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19712812|gb|AAL93711.1| Nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 441

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 7   RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60
           +I + ++ L GK ++   ++  +  W  + KI    E  +  +++ ++  G+ G GGA F
Sbjct: 87  KIESRVFPLTGKVMTVFIENDKKEEWAELSKIENWEEADKKALLDIIREKGIVGIGGATF 146

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T +K +  P    D    L++N  E EP    D  +M   P +++EG  I    +    
Sbjct: 147 PTHVKLNPPPNTQLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPN 203

Query: 121 AFIYVRGEFIRERESLQAAVD 141
            ++ +        ES++ A +
Sbjct: 204 VYVGIEDNKPEAIESMRKATE 224


>gi|237741389|ref|ZP_04571870.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           4_1_13]
 gi|229430921|gb|EEO41133.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           4_1_13]
          Length = 435

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 7   RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60
           +I + ++ L GK ++   ++  +  W  + KI    E  +  +++ ++  G+ G GGA F
Sbjct: 81  KIESRVFPLTGKVMTIFIENDKKEEWTELSKIENWEEADKKALLDIIREKGIVGIGGATF 140

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T +K +  P    D    L++N  E EP    D  +M   P +++EG  I    +    
Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPD 197

Query: 121 AFIYVRGEFIRERESLQAAVD 141
            ++ +        ES++ A +
Sbjct: 198 VYVGIEDNKPEAIESMRKATE 218


>gi|296329171|ref|ZP_06871672.1| electron transport complex protein RnfC [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296153527|gb|EFG94344.1| electron transport complex protein RnfC [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 441

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 7   RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60
           +I + ++ L GK ++   ++  +  W  + KI    E  +  +++ ++  G+ G GGA F
Sbjct: 87  KIESRVFPLTGKVMTIFIENDKKEEWAELSKIENWEEADKKALLDIIREKGIVGIGGATF 146

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T +K +  P    D    L++N  E EP    D  +M   P +++EG  I    +    
Sbjct: 147 PTHVKLNPPPNTQLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPN 203

Query: 121 AFIYVRGEFIRERESLQAAVD 141
            ++ +        ES++ A +
Sbjct: 204 VYVGIEDNKPEAIESMRKATE 224


>gi|257866189|ref|ZP_05645842.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC30]
 gi|257872520|ref|ZP_05652173.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC10]
 gi|257800123|gb|EEV29175.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC30]
 gi|257806684|gb|EEV35506.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC10]
          Length = 445

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 130/362 (35%), Gaps = 82/362 (22%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           I  N Y      LS      +W +         + I+ +++  G+ G+GGA F T +K+S
Sbjct: 101 IIENDYAFDNDFLSTPF---NWQSA------ANETILKKIRQGGIAGKGGATFPTHVKFS 151

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                 + + H L++N  E EP    D  +M+ E   +I+G  IA   +      I +  
Sbjct: 152 IDE---NKKIHTLILNGSECEPFLRSDAFLMQKEAKKIIQGAKIAQKLLADPKIIIGIED 208

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           +      ++QAA  E               D  I V      Y  G E  L+E L  ++ 
Sbjct: 209 DKPLAISAMQAASAE---------------DDTIEVVTVPTVYPTGGEKQLVELLTDQEV 253

Query: 188 QPRLKPP---FPANVG--LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
                 P     A++G  L    T+    E++     ++ R    Y+             
Sbjct: 254 ------PLGGLTADIGIVLINVATSFAIAEAVCYDKPLIER----YT------------- 290

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP-GGSSVPCLPAGQMRGA 301
           +++G V +P  V+  +     ELI+   GG +G    L+   P  G SV  L     +  
Sbjct: 291 TVTGDVQHPRIVKNPLGTLAGELID-FAGGFQGAPSKLILGGPMMGKSVKTLKVPVTK-- 347

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
                         G+  ++V +  TD     W     Y    C +C  C E     +  
Sbjct: 348 --------------GSNGIVVFNEETD-----W----LYAENPCIRCNKCVEACPMRLMP 384

Query: 362 ME 363
           ME
Sbjct: 385 ME 386


>gi|319955921|ref|YP_004167184.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Nitratifractor salsuginis DSM 16511]
 gi|319418325|gb|ADV45435.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Nitratifractor salsuginis DSM 16511]
          Length = 670

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTGWMMRV 361
           +YD  K   + +G   V + D   D ++     +  Y+   E+CG+C P R G   +  +
Sbjct: 34  NYDEGKPSKAFIGWDGVAIFDEEIDAVRLATEYAATYQKYSEACGRCAPGRWGGRILYDL 93

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           ++++ +G     +++ L EVS+ +   + C +G     PI  L+++++
Sbjct: 94  LDKIARGEGSFADVEHLREVSQTMMLTSKCEIGRTVPKPILDLMEHYK 141


>gi|282857805|ref|ZP_06267013.1| FAD dependent oxidoreductase [Pyramidobacter piscolens W5455]
 gi|282584366|gb|EFB89726.1| FAD dependent oxidoreductase [Pyramidobacter piscolens W5455]
          Length = 610

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 336 LSVFYKH----ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           L+V + H    +SCG+C PCR G   +  ++  ++ G A    ID +   ++++   + C
Sbjct: 39  LAVSFLHICHSQSCGKCVPCRVGLSRLEELLNSVLDGRADMGTIDTIERTAESVYLTSDC 98

Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           A+G  AA  +   ++ FR    E I Q+ RC
Sbjct: 99  AIGQEAARMVLKGVRGFRDDFVEHI-QHGRC 128


>gi|52424975|ref|YP_088112.1| electron transport complex protein RnfC [Mannheimia
           succiniciproducens MBEL55E]
 gi|81691415|sp|Q65U33|RNFC_MANSM RecName: Full=Electron transport complex protein rnfC; AltName:
           Full=Nitrogen fixation protein rnfC
 gi|52307027|gb|AAU37527.1| NqrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 723

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L +  + +I ++  +G+ G GGA F T  K     K    +   L++N  E EP  
Sbjct: 125 IDDFLSQSAEQLIEKIYQAGIAGLGGAVFPTAAKIDSAQK----KVKLLIINGAECEPYI 180

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           TC DR +MR  P  +IEG  I  + +      I V        +S++ A+
Sbjct: 181 TCDDR-LMRDNPDEIIEGIRILRYILRPEKVVIAVEDNKPEAVQSIKNAL 229


>gi|291458461|ref|ZP_06597851.1| Fe(III) reductase, beta subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418994|gb|EFE92713.1| Fe(III) reductase, beta subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 611

 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR+G   + R++++++ G A ++ +D +  ++  I   + CA+G  AA  + 
Sbjct: 50  QTCGKCVPCRDGLPLVARLLQKVINGDATQQTLDNIKMMAMMIRESSDCAIGWNAADEVL 109

Query: 403 GLIKNFRPLIEERIDQYHRCN 423
             ++ F    +  I ++H+C+
Sbjct: 110 KGLELFADEYQSHI-RFHKCD 129


>gi|322421177|ref|YP_004200400.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Geobacter sp. M18]
 gi|320127564|gb|ADW15124.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Geobacter sp. M18]
          Length = 670

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 59/107 (55%), Gaps = 4/107 (3%)

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDI--IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           YDG + + + +G   +++ ++  DI  + A +   V  K+  CG+CTP ++GT  +M  +
Sbjct: 33  YDGERPLSAFIGWDGIVLYNKDVDIPAMAAEYMKRVQTKY-VCGKCTPGKKGTRVIMDAL 91

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             +++G  ++ ++D + +V   +E    C L  +++ P+   + +FR
Sbjct: 92  AGIIEGRGKEEDLDTILDVGSVLE-HCKCTLCPSSSVPVIDAVTHFR 137


>gi|256846561|ref|ZP_05552018.1| NADH dehydrogenase [Fusobacterium sp. 3_1_36A2]
 gi|294784148|ref|ZP_06749449.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium sp. 3_1_27]
 gi|256718330|gb|EEU31886.1| NADH dehydrogenase [Fusobacterium sp. 3_1_36A2]
 gi|294488218|gb|EFG35563.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium sp. 3_1_27]
          Length = 435

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 7   RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60
           +I + ++ L GK ++   ++  +  W  + KI    E  +  +++ ++  G+ G GGA F
Sbjct: 81  KIESRVFPLTGKVMTIFIENDKKEEWAELSKIENWEEADKKALLDIIREKGIVGIGGATF 140

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T +K +  P    D    L++N  E EP    D  +M   P +++EG  I    +    
Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPD 197

Query: 121 AFIYVRGEFIRERESLQAAVD 141
            ++ +        ES++ A +
Sbjct: 198 VYVGIEDNKPEAIESMRKATE 218


>gi|237743730|ref|ZP_04574211.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 7_1]
 gi|256028188|ref|ZP_05442022.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. D11]
 gi|260495794|ref|ZP_05815915.1| NADH dehydrogenase [Fusobacterium sp. 3_1_33]
 gi|289766120|ref|ZP_06525498.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D11]
 gi|229432761|gb|EEO42973.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 7_1]
 gi|260196641|gb|EEW94167.1| NADH dehydrogenase [Fusobacterium sp. 3_1_33]
 gi|289717675|gb|EFD81687.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D11]
          Length = 438

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 7   RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60
           +I + ++ L GK ++   ++  +  W  + KI    E  +  +++ ++  G+ G GGA F
Sbjct: 81  KIESRVFPLTGKVMTVFIENDKKEEWAELTKIENWEEADKKALLDIIREKGIVGIGGATF 140

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T +K +  P    D    L++N  E EP    D  +M   P +++EG  I    +    
Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPD 197

Query: 121 AFIYVRGEFIRERESLQAAVD 141
            ++ +        ES++ A +
Sbjct: 198 VYVGIEDNKPEAIESMRKATE 218


>gi|46202219|ref|ZP_00053559.2| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Magnetospirillum magnetotacticum MS-1]
          Length = 498

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 41/263 (15%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99
           + I   V  +G+ G GGA F + +K     +    +   L++N  E EP  TC DR +MR
Sbjct: 125 NEIKTRVAEAGIVGLGGATFPSAVKLGLGGQ---HKLEILLLNGAECEPYLTCDDR-VMR 180

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                +++G  I + A+GA    I V     +  ESL+A   +     ++G   +     
Sbjct: 181 EFAAQVVDGARIMAHALGAPKVIIAVEDNKPQAVESLKAEAAKTPNVEVVGVPVQ----- 235

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
                     Y  G E  L +++ G++   R      A+VG+      V+NV +   V  
Sbjct: 236 ----------YPMGAERHLTQAVTGRETPAR---KLTADVGV-----VVHNVATARAVHQ 277

Query: 220 ILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +R G    S          ++ ++S G V  P  +E  +     EL++  CGGI     
Sbjct: 278 AVRLGRPLVS----------RVVTVSGGGVAEPKNIEVPLGTKVSELLD-FCGGISKATK 326

Query: 279 NLLAVIP-GGSSVPCLPAGQMRG 300
            +++  P  G  +P L    ++G
Sbjct: 327 RVISGGPMMGQPLPSLDVAVVKG 349


>gi|257095915|ref|YP_003169556.1| RnfABCDGE type electron transport complex subunit C [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048439|gb|ACV37627.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 508

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 26/182 (14%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I     A+G+ G GGA F   +K++   ++   +   L+VN  E EP    D  IMR   
Sbjct: 132 IARRTAAAGVVGLGGATFPAAVKFNLGRRL---KVSTLIVNGGECEPYLSSDDRIMRDRA 188

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +++G  I  +AIGA  A + +      E    QA      A+   G         ++ 
Sbjct: 189 DEVVDGLRIVMYAIGAGEALVGI------EDNKPQAIAAMRVAAAAFG---------NVH 233

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           V      Y  G +  L+++L GK+         PA+         V+NV + A V   LR
Sbjct: 234 VRPVPARYPMGSDKQLIQTLTGKE--------VPADARAAEVGVLVHNVSTCAAVHRALR 285

Query: 223 RG 224
           RG
Sbjct: 286 RG 287


>gi|77465208|ref|YP_354711.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1]
 gi|77389626|gb|ABA80810.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1]
          Length = 517

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 39/243 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99
           + I  +V  +G+ G GGA F + +K +   K      H LV+N  E EP  TC DR +MR
Sbjct: 136 EEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYDL---HTLVINGAECEPYLTCDDR-LMR 191

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                + +G  I + A+G     + +         ++Q                    D+
Sbjct: 192 ERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQ--------------RFDRALDI 237

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            + V      Y  G E  L++ L G++   R      A++G+      V+N  +   V  
Sbjct: 238 PLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVHL 289

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +R G    S          ++ ++SG  V  P  V   +     E++  HCGG     D
Sbjct: 290 AVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVV-AHCGGYAEEPD 338

Query: 279 NLL 281
            LL
Sbjct: 339 RLL 341


>gi|281422077|ref|ZP_06253076.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella
           copri DSM 18205]
 gi|281403866|gb|EFB34546.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella
           copri DSM 18205]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 104/273 (38%), Gaps = 38/273 (13%)

Query: 12  LYGLQGKSLSDSMSRG-HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           +  ++G    +S+ R    + ++   E   + I+N +K +GL G GGAGF T +K    P
Sbjct: 98  IINVEGDEWEESIDRSDKLETLEAHAELTPEEIVNRIKVAGLTGMGGAGFPTFIKLCPPP 157

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
                +   +++N  E EP    D  +M      ++ G  +   A      +I       
Sbjct: 158 ---GAKAECVIINGVECEPYITADYRLMMEHADEILVGLNLLMKAAQVEKGYI------- 207

Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
                    +++   + +     K   D  I +   A  Y  G E  L++++   + Q  
Sbjct: 208 --------GIEDNKPAAIKLFEEKTANDARIEIVPLAKKYPQGGEKQLVDAV--IRRQVP 257

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVN 249
             P  P NVG       V NV +   V          Y    +      +  +++G  V 
Sbjct: 258 APPAIPVNVG-----AIVQNVGTAFAV----------YQAVMKNKPLFERYTTVTGKQVK 302

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
            P      M   F ++IE +CGG+  G + +LA
Sbjct: 303 NPGNFLVRMGTPFSQMIE-NCGGLPEGDNKVLA 334


>gi|237859138|gb|ACR23742.1| RnfC [Acetobacterium woodii DSM 1030]
          Length = 443

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 36/232 (15%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I   V  +G+ G GGA F T +K +  P    D    +V+N  E EP    D  +M  
Sbjct: 125 DAIKKMVLNAGIVGLGGATFPTHVKLAIPPDKKVD---CVVLNGAECEPYLTADHHLMTS 181

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           +   ++ G  +A  ++G    FI V        E+L  A+         G++S+L     
Sbjct: 182 QAEKVVMGLKLAMKSVGVEKGFIGVEDNKTDAIEALVKAI---------GNDSRLE---- 228

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
             V+     Y  G E  L+ ++ G++         PA+ G+      V NV + A +   
Sbjct: 229 --VYSLHTKYPQGAEKQLIAAITGREVPSGA---LPADAGV-----VVMNVGTAAQIAES 278

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           +  G   Y  +         L      +  P T+E  + + F  +I++ CGG
Sbjct: 279 MITGLPLYKRY---------LTCTGDAIKNPQTIEIRIGVPFQSVIDQ-CGG 320


>gi|167856054|ref|ZP_02478797.1| electron transport complex protein RnfC [Haemophilus parasuis
           29755]
 gi|167852803|gb|EDS24074.1| electron transport complex protein RnfC [Haemophilus parasuis
           29755]
          Length = 629

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L    D II +V  +G+ G GGA F T  K     K C      L++N  E EP  
Sbjct: 126 IDDFLSLTSDQIIQKVYQAGIAGLGGAVFPTSHKLHVADKRCK----LLIINGAECEPYI 181

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+     +IEG  I  + +      I +     +  ++++ A        L G
Sbjct: 182 TCDDR-LMQDYADEMIEGVRILRYVLRPEEVLIAIEDNKPKAIQAVEKA--------LKG 232

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           +N       DI V      Y  G    L++ L G
Sbjct: 233 AN-------DISVRVIPTKYPSGASDQLVQVLTG 259


>gi|332560814|ref|ZP_08415132.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N]
 gi|332274612|gb|EGJ19928.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N]
          Length = 517

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 39/243 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99
           + I  +V  +G+ G GGA F + +K +   K      H LV+N  E EP  TC DR +MR
Sbjct: 136 EEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYDL---HTLVINGAECEPYLTCDDR-LMR 191

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                + +G  I + A+G     + +         ++Q                    D+
Sbjct: 192 ERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQ--------------RFDRALDI 237

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            + V      Y  G E  L++ L G++   R      A++G+      V+N  +   V  
Sbjct: 238 PLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVHL 289

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +R G    S          ++ ++SG  V  P  V   +     E++  HCGG     D
Sbjct: 290 AVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVV-AHCGGYAEEPD 338

Query: 279 NLL 281
            LL
Sbjct: 339 RLL 341


>gi|313886233|ref|ZP_07819962.1| electron transport complex, RnfABCDGE type, C subunit
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924304|gb|EFR35084.1| electron transport complex, RnfABCDGE type, C subunit
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 11/129 (8%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHW----DNVDKI---LEKGRDWIINEVKASGLRG 54
           +T  D+I T+  G +  ++   +    W    D  D +   +E     II+ +   G+ G
Sbjct: 79  VTKVDQI-TDASGFKKPAVFIKVDGDEWEDYIDQTDTLVTDIELDAKQIIDRIAEMGIVG 137

Query: 55  RGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114
            GGA F T +K S  P   +D   Y+++NA E EP    D  +MR +   ++ GC I   
Sbjct: 138 MGGATFPTHVKLSPPPGQSAD---YVIINAVECEPYLTSDDALMRVKAMEIMVGCAIIMK 194

Query: 115 AIGAHCAFI 123
           A  A    I
Sbjct: 195 AANAPRTLI 203


>gi|332299855|ref|YP_004441776.1| Electron transport complex protein rnfC [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176918|gb|AEE12608.1| Electron transport complex protein rnfC [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 450

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 11/129 (8%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHW----DNVDKI---LEKGRDWIINEVKASGLRG 54
           +T  D+I T+  G +  ++   +    W    D  D +   +E     II+ +   G+ G
Sbjct: 79  VTKVDQI-TDASGFKKPAVFIKVDGDEWVDYIDQTDTLVTDIELDAKQIIDRIAEMGIVG 137

Query: 55  RGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114
            GGA F T +K S  P   +D   Y+++NA E EP    D  +MR +   ++ GC I   
Sbjct: 138 MGGATFPTHVKLSPPPGQSAD---YVIINAVECEPYLTSDDALMRVKAMEIMVGCAIIMK 194

Query: 115 AIGAHCAFI 123
           A  A    I
Sbjct: 195 AANAPRTLI 203


>gi|166031626|ref|ZP_02234455.1| hypothetical protein DORFOR_01326 [Dorea formicigenerans ATCC
           27755]
 gi|166028603|gb|EDR47360.1| hypothetical protein DORFOR_01326 [Dorea formicigenerans ATCC
           27755]
          Length = 611

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 342 HESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWP 400
           +++CG+C PCR+G   + R+M++++ G A ++ +D +  ++  I     CA+G +AA   
Sbjct: 49  NQTCGKCVPCRDGLPLVARLMQKVLDGRATEKTLDNIRMMATMIRSSADCAIGWNAADEV 108

Query: 401 IQGL 404
           ++GL
Sbjct: 109 LKGL 112


>gi|294784049|ref|ZP_06749371.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479861|gb|EFG27640.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium sp. 1_1_41FAA]
          Length = 435

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 9/141 (6%)

Query: 7   RIFTNLYGLQGKSLS---DSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGF 60
           +I   +Y L GK ++   ++  +  W  + KI       +  +++ ++  G+ G GGA F
Sbjct: 81  KIENRVYPLSGKVMTIFIENDKKEEWAELTKIANWETADKKELLDIIREKGIVGIGGATF 140

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T +K +  P    D    L++N  E EP    D  +M   P +++EG  I    +    
Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPD 197

Query: 121 AFIYVRGEFIRERESLQAAVD 141
            ++ +        ES++ A +
Sbjct: 198 VYVGIEDNKPEAIESMKKATE 218


>gi|291519330|emb|CBK74551.1| electron transport complex, RnfABCDGE type, C subunit/electron
           transport complex, RnfABCDGE type, D subunit
           [Butyrivibrio fibrisolvens 16/4]
          Length = 760

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query: 30  DNVDKILEKG-----------RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +N  K +EKG            + II +++ +G+ G GGAGF T +K S  PK   +   
Sbjct: 100 ENDGKFIEKGFEACADYTNLSNEEIIKKIQEAGIVGMGGAGFPTHVKLS--PK-NPEAIE 156

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           +++ N  E EP    D   M  EP  LIEG  I
Sbjct: 157 FIIANCAECEPYLTSDYRSMVEEPEKLIEGMKI 189


>gi|254302139|ref|ZP_04969497.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322331|gb|EDK87581.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 435

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 112/275 (40%), Gaps = 51/275 (18%)

Query: 7   RIFTNLYGLQGKSLS---DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGF 60
           +I + ++ L GK ++   ++  +  W  + KI    E  +  +++ ++  G+ G GGA F
Sbjct: 81  KIESRVFPLTGKVMTIFIENDKKEEWAELSKIENWEEADKKALLDIIREKGIVGIGGATF 140

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T +K +  P    D    L++N  E EP    D  +M   P +++EG  I    +    
Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVSD 197

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            ++ +        E+++ A +              G D+ I+       Y  G E  L++
Sbjct: 198 VYVGIEDNKPEAIETMRKATE--------------GTDIKIVPLK--TKYPQGGEKQLIK 241

Query: 181 SLEGKK---GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           S+  ++   GQ       P+ VG+      V N  + A +   +  G             
Sbjct: 242 SILDRQVPSGQ------LPSAVGV-----VVQNTGTAAAIYEAVVNGKPLIE-------- 282

Query: 238 GTKLFSISGH-VNYPCTVEESMSITFDELIEKHCG 271
             K+ ++SG  +  P  V+ ++   F  +++ HCG
Sbjct: 283 --KVVTVSGKAIKNPKNVKVAIGTPFSYILD-HCG 314


>gi|315609146|ref|ZP_07884115.1| electron transport complex protein RnfC [Prevotella buccae ATCC
           33574]
 gi|315249216|gb|EFU29236.1| electron transport complex protein RnfC [Prevotella buccae ATCC
           33574]
          Length = 464

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 46/277 (16%)

Query: 12  LYGLQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           +  ++G    +S+ R    + +D   E   + I+N VK +G+ G GGAGF T +K    P
Sbjct: 98  IINVEGDEWEESIDRSETLETLDMHPELTPEEIVNRVKVAGVTGMGGAGFPTFIKLCPPP 157

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV---RG 127
              + +   +++N  E EP    D  +M      ++ G  +   A      +I +   + 
Sbjct: 158 ---TAKAECVILNGVECEPYITSDYRLMMEHAREILVGLDLLMKAAKVERGYIGIEENKP 214

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           E IR    L A                   D  + +   A  Y  G E  L++++   + 
Sbjct: 215 EAIRLLTELTAG------------------DPRVEIVPLAQKYPQGGEKQLVDAV--IRR 254

Query: 188 QPRLKPPFPANVGLYGCPTTVNNV-ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           Q    P  P NVG       V NV  + AV   +++R   +            +  +++G
Sbjct: 255 QVPAPPAIPVNVG-----AIVQNVGTAFAVYQAVMKRKPLF-----------ERYTTVTG 298

Query: 247 -HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
             +  P      M  TF +LI+  CGG+  G + +LA
Sbjct: 299 KQMKQPGNFLVRMGTTFGQLID-LCGGLPEGDNKVLA 334


>gi|237751584|ref|ZP_04582064.1| formate dehydrogenase [Helicobacter bilis ATCC 43879]
 gi|229372950|gb|EEO23341.1| formate dehydrogenase [Helicobacter bilis ATCC 43879]
          Length = 928

 Score = 45.1 bits (105), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 7/105 (6%)

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTGWMMRVMERL- 365
           KE+ + +G   +++ D S DI++ +   +  Y++  +SCG+CTP + G   +  ++E+L 
Sbjct: 36  KEIKAFVGWDGIVIFDPSLDILQTLKIYAKQYQNYAQSCGRCTPGKYGGKVLYELLEKLQ 95

Query: 366 ----VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
               V      ++I+ L EV + ++  + C +G     PI  ++K
Sbjct: 96  NYDYVSDCEALKDIEKLKEVCELMKATSKCEVGKTTPNPILQILK 140


>gi|291460671|ref|ZP_06600061.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416630|gb|EFE90349.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 485

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ I++ V+ +G+ G GGAGF T +K S  PK   ++  Y +VN  E EP  C D   M 
Sbjct: 151 REEIVSIVRDAGIVGLGGAGFPTAVKLS--PKE-PEKIDYFLVNGAECEPYLCSDYRDML 207

Query: 100 HEPHTLIEG 108
             P  LI G
Sbjct: 208 EYPERLIGG 216


>gi|197117055|ref|YP_002137482.1| Fe(III) reductase subunit beta [Geobacter bemidjiensis Bem]
 gi|197086415|gb|ACH37686.1| Fe(III) reductase, beta subunit [Geobacter bemidjiensis Bem]
          Length = 670

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 61/109 (55%), Gaps = 4/109 (3%)

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDI--IKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           + YDG + + + +G   +I+ ++  D+  + A +   V  K+  CG+CTP ++GT  MM 
Sbjct: 31  VSYDGERPLSAFIGWDGIILYNKDVDVPAMVAEYMKRVQTKY-VCGKCTPGKKGTRVMMD 89

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            +  +V+G   ++++D + ++ + ++    C L  +++ P+   + +FR
Sbjct: 90  ALLAIVEGRGSEQDLDTILDLGEVLK-HCKCTLCPSSSVPVIDAVTHFR 137


>gi|229497138|ref|ZP_04390841.1| electron transport complex protein RnfC [Porphyromonas endodontalis
           ATCC 35406]
 gi|229315955|gb|EEN81885.1| electron transport complex protein RnfC [Porphyromonas endodontalis
           ATCC 35406]
          Length = 443

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++++   G+ G GGA F T +K S  P     +   L++NA E EP    D  +MR   
Sbjct: 126 IVDKIAEMGIVGMGGATFPTHVKLSPPP---GQKATVLIINAVECEPYLTSDDALMREHA 182

Query: 103 HTLIEGCVIASFAIG 117
             ++ GC I   AIG
Sbjct: 183 EEIMVGCTIIMKAIG 197


>gi|116872516|ref|YP_849297.1| pduS type ferredoxin, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741394|emb|CAK20518.1| pduS type ferredoxin, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 454

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 67/320 (20%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 6   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L+ A+ E  AS              + 
Sbjct: 59  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRLAITELNAS--------------VT 104

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 148

Query: 221 LRRGASW--YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276
                 W  Y     +     K  +++G VN P  ++  +   F+      C    GG  
Sbjct: 149 ------WNVYHAIQDDAPVVRKQLTVTGAVNEPKLLDVPIGTPFEV-----CLAAAGGTN 197

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D  L           L  G M G + D   + E      T+ +IV + +  + K  ++ 
Sbjct: 198 LDEYLF----------LDGGPMMGKLNDQSTIAEKVVTKTTSGLIVTEDTGYLHKLHYQT 247

Query: 337 --SVFYKHES-CGQCTPCRE 353
              +F + +S C QC+ C +
Sbjct: 248 VEQIFNETKSACIQCSLCSD 267


>gi|167759873|ref|ZP_02432000.1| hypothetical protein CLOSCI_02236 [Clostridium scindens ATCC 35704]
 gi|167662492|gb|EDS06622.1| hypothetical protein CLOSCI_02236 [Clostridium scindens ATCC 35704]
          Length = 442

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 22/208 (10%)

Query: 8   IFTNLYGLQGKSLSDSMS-RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           IF+++YG+  + L D +  +   +  D+ +       +  VK +G+ G GGAGF TG+K 
Sbjct: 42  IFSSVYGVVEEVLEDRIVIKPDEEQKDEFVPIKEGSKLEMVKEAGIVGMGGAGFPTGVKI 101

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
                       Y++VNA E EPG   +   +  +    I G         A    I ++
Sbjct: 102 G-----TDLHGGYILVNAAECEPGLRHNIQQIEEKTDITIRGLKYCMEISNAAKGIIAIK 156

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
            +  +  E L+ A+ +               + +I +H     Y  GEE A++    GK 
Sbjct: 157 KKNEKAIEFLREAIKD---------------EDNITIHLLPDIYPMGEERAVVRECLGKL 201

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESI 214
             P  + P  A+  +  C T +   E+I
Sbjct: 202 LDPT-QLPSAADAVVINCETLLRIAEAI 228


>gi|291614940|ref|YP_003525097.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291585052|gb|ADE12710.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 447

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 32/189 (16%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           G+  ++  ++ +G+ G GGA F   +K +  P+   D    LVVN  E EP    D  IM
Sbjct: 126 GKKELLEAIQQTGISGLGGATFPAHVKLNVPPETAIDT---LVVNGAECEPFLTCDHRIM 182

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
                 L+ G   A  A GA  A I                V++     +    + L  D
Sbjct: 183 VERTQDLLRGIRFAMQASGAPRAVI---------------GVEDNKPDAIAAIEAALPLD 227

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKK---GQPRLKPPFPANVGLYGCPTTVNNVESIA 215
             + V      Y  G E  ++ +L G++   GQ       PA++G+      VNNV ++A
Sbjct: 228 GTVTVKALETKYPQGAEDTIIYALLGREIPAGQ------RPASIGVL-----VNNVMTLA 276

Query: 216 VVPTILRRG 224
            +  +L  G
Sbjct: 277 YLGRLLPAG 285


>gi|307718965|ref|YP_003874497.1| transporter [Spirochaeta thermophila DSM 6192]
 gi|306532690|gb|ADN02224.1| transporter [Spirochaeta thermophila DSM 6192]
          Length = 444

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II  +K +G+ G GGAGF T +K S  P    D    L++N  E EP    D  +M  + 
Sbjct: 127 IIERIKDAGIVGMGGAGFPTHVKLSIPPGKAID---TLIINGVECEPYLTADHRLMLEKT 183

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             ++ G  I   A+G    FI
Sbjct: 184 DEILVGIAIIRRALGEPRVFI 204


>gi|328955432|ref|YP_004372765.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Coriobacterium glomerans PW2]
 gi|328455756|gb|AEB06950.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Coriobacterium glomerans PW2]
          Length = 609

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           +SCG+CTPCR G G +   +E+++ G A  + + ++   ++ I   + CA+G  A     
Sbjct: 50  QSCGKCTPCRVGLGVLADQLEKVLAGRADDQTLKVIERTAETIYRSSDCAIGYEAGSMAL 109

Query: 403 GLIKNFRPLIEERI 416
             I+ FR   E  +
Sbjct: 110 TAIRGFRDDFEHHL 123


>gi|189500466|ref|YP_001959936.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           phaeobacteroides BS1]
 gi|189495907|gb|ACE04455.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           phaeobacteroides BS1]
          Length = 441

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 20/151 (13%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ II ++K +G+ G GGAGF T +K +  P    D    +++N  E EP    D  +M 
Sbjct: 121 KEDIIGKIKNAGIVGMGGAGFPTNVKLAPPPDKKIDT---IILNGAECEPFLTADHRLML 177

Query: 100 HEPHTLIEGC-VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             P  ++EG  +I S   G   A+I +      ++++++       + G+   + K  Y 
Sbjct: 178 ESPEEIVEGLNIITSLFGGEARAYIGIES---NKKDAIETLTSHASSKGIEVVSLKTKYP 234

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQP 189
                         G E  L+ ++ G+  +P
Sbjct: 235 Q-------------GAEKQLINAITGRTIEP 252


>gi|189346514|ref|YP_001943043.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           limicola DSM 245]
 gi|189340661|gb|ACD90064.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           limicola DSM 245]
          Length = 441

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I+  +  SG+ G GGAGF +G+K S       D    +++N  E EP    D  +M 
Sbjct: 121 KEEILKRITDSGIVGMGGAGFPSGVKLSPPKDKTID---TIILNGAECEPFLTADHRVMV 177

Query: 100 HEPHTLIEGC-VIASFAIGAHCAFI 123
            EP  +I+G  +I S   G   A+I
Sbjct: 178 EEPEAIIKGLEIITSLFQGKVSAYI 202


>gi|291549871|emb|CBL26133.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductases [Ruminococcus torques L2-14]
          Length = 610

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 42/78 (53%)

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           + +SCG+CTPCR G   +  ++  ++ G A    +DL+  +S++I   + C +G  A   
Sbjct: 48  QTQSCGKCTPCRVGLWQLKNLLTDVMNGTATMETLDLIDTLSESIREGSDCPIGYEAGAM 107

Query: 401 IQGLIKNFRPLIEERIDQ 418
           +   +++ R   EE + Q
Sbjct: 108 VHKSLRDCREDYEEHVRQ 125


>gi|315650909|ref|ZP_07903950.1| electron transport protein [Eubacterium saburreum DSM 3986]
 gi|315486823|gb|EFU77164.1| electron transport protein [Eubacterium saburreum DSM 3986]
          Length = 449

 Score = 44.7 bits (104), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 67/168 (39%), Gaps = 28/168 (16%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           V+ SGL G GGAGF T +K +F           LVVNA E EP    +   +  EP  LI
Sbjct: 101 VEESGLVGLGGAGFPTYIKMNF----DFGGEGILVVNAAECEPILSHNIARIEDEPEKLI 156

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
           E   I    + A    I ++    +  + L+  +D                D  I +H  
Sbjct: 157 EAMKIVMETVHAVRGIIGIKKIHEKAIDRLKEVID----------------DSTISIHEL 200

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
              Y  GEE ALL    G   +P     FP++         V NVE++
Sbjct: 201 QNIYPMGEERALLRETIGILLEPE---KFPSD-----AKAVVLNVETL 240


>gi|225571531|ref|ZP_03780527.1| hypothetical protein CLOHYLEM_07629 [Clostridium hylemonae DSM
           15053]
 gi|225159608|gb|EEG72227.1| hypothetical protein CLOHYLEM_07629 [Clostridium hylemonae DSM
           15053]
          Length = 442

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 22/208 (10%)

Query: 8   IFTNLYGLQGKSLSDSMS-RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           IF+++YG+  +   D +  +   +  D+ +       +  VK +G+ G GGAGF TG+K 
Sbjct: 42  IFSSVYGVVEEVADDRIIIKPDEEQKDEFVPIKEGTKLEMVKEAGIVGMGGAGFPTGVKI 101

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
                    +  Y++VNA E EPG   +   +  +    I G         A    I ++
Sbjct: 102 G-----TDLKGGYVLVNAAECEPGLRHNIQQIEEQTDITIRGLKYCMEVCNASKGIIAIK 156

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
            +  +  + L+ A+ E               +  I +H     Y  GEE A++    GK 
Sbjct: 157 KKNEKAIQILREAIKE---------------EDSITIHLLPDIYPMGEERAVVREALGKL 201

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESI 214
             P  + P  A+  +  C T +   E+I
Sbjct: 202 LDPT-QLPSAADAVVINCETLLRIAEAI 228


>gi|288926954|ref|ZP_06420851.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella
           buccae D17]
 gi|288336274|gb|EFC74658.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella
           buccae D17]
          Length = 464

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 110/277 (39%), Gaps = 46/277 (16%)

Query: 12  LYGLQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           +  ++G    +S+ R    + +D   E   + I+N VK +G+ G GGAGF T +K    P
Sbjct: 98  IINVEGDEWEESIDRSETLETLDMHPELTPEEIVNRVKVAGVTGMGGAGFPTFIKLCPPP 157

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV---RG 127
              + +   +++N  E EP    D  +M      ++ G  +   A      +I +   + 
Sbjct: 158 ---TAKAECVILNGVECEPYITSDYRLMMEHAREILVGLDLLMKAAKVERGYIGIEENKP 214

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           E IR    L A                   D  + +   A  Y  G E  L++++   + 
Sbjct: 215 EAIRLLTELTAG------------------DPRVEIVPLAQKYPQGGEKQLVDAV--IRR 254

Query: 188 QPRLKPPFPANVGLYGCPTTVNNV-ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           Q    P  P NVG       V NV  + AV   +++R   +            +  +++G
Sbjct: 255 QVPAPPAIPVNVG-----GIVQNVGTAFAVYQAVMKRKPLF-----------ERYTTVTG 298

Query: 247 -HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
             +  P      M  TF +LI+  CGG+  G + +LA
Sbjct: 299 KQMKQPGNFLVRMGTTFGQLID-LCGGLPEGDNKVLA 334


>gi|331268942|ref|YP_004395434.1| RnfABCDGE type electron transport complex subunit C [Clostridium
           botulinum BKT015925]
 gi|329125492|gb|AEB75437.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum BKT015925]
          Length = 440

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 124/328 (37%), Gaps = 62/328 (18%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G +       +  ++ II  VK +G+ G GGA F T +K +  P    D    +++N  E
Sbjct: 108 GEFTKPKNYTDMTKEEIIELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIILNGAE 164

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EP    D  +M  E + ++EG  I          +I +        E+L+ A  +    
Sbjct: 165 CEPYLTCDHRLMLEETNMIVEGLKIILHMHPNAKGYIGIEDNKKNAIEALRNATKDIP-- 222

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                        +I V      Y  G E  L+ S+  K+  P  K P  A     GC  
Sbjct: 223 -------------NIEVKALKTKYPQGAEKQLIYSVM-KREVPSGKLPADA-----GC-- 261

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDEL 265
            V NV ++  V   +  G    S          ++ +++G  V  P  +   + +++ EL
Sbjct: 262 IVQNVNTVREVYNAVVNGRPTTS----------RVVTVTGEAVKNPKNLRVRLGMSYREL 311

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           +E  C G +   ++ + VI GG                       MG G+ T  V V+  
Sbjct: 312 VEA-CDGFK---EDPVKVISGGPM---------------------MGMGISTLDVPVIKG 346

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCRE 353
           S+ I+    + +V     SC +C  C E
Sbjct: 347 SSGILCLTEKQAVLPDESSCIRCGRCAE 374


>gi|153840325|ref|ZP_01992992.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AQ3810]
 gi|149746012|gb|EDM57142.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AQ3810]
          Length = 280

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 28/178 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 75  QESADALIDIIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDK 130

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     LI+G  I    +      I +        ++L++A                 
Sbjct: 131 LMQEHAEELIQGIEIVEHILKPKLTIIGIEDNKPDAIKALESA----------------A 174

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
            + DI++      Y  G E  L++ L  K+         PA++G+      V NV S+
Sbjct: 175 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEVP---SGSIPADIGIL-----VQNVGSL 224


>gi|210621815|ref|ZP_03292844.1| hypothetical protein CLOHIR_00789 [Clostridium hiranonis DSM 13275]
 gi|210154579|gb|EEA85585.1| hypothetical protein CLOHIR_00789 [Clostridium hiranonis DSM 13275]
          Length = 611

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           +SCG+C PCR G   +  ++  +++G A    IDL+ + +K I     CA+G  AA  + 
Sbjct: 50  QSCGKCVPCRVGLEQLKALLTDVLEGEADLETIDLIEKTAKVIVNSADCAIGYEAARMVL 109

Query: 403 GLIKNFRPLIEERIDQ 418
             ++ FR      I+Q
Sbjct: 110 QGVQGFRDDYVSHIEQ 125


>gi|325837597|ref|ZP_08166444.1| electron transport complex protein, RnfABCDGE type, C subunit
           [Turicibacter sp. HGF1]
 gi|325490899|gb|EGC93198.1| electron transport complex protein, RnfABCDGE type, C subunit
           [Turicibacter sp. HGF1]
          Length = 462

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 73/330 (22%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ I+  ++ +G+ G GG+GFST +K+     +  +  H +++N  E EP    D   M 
Sbjct: 126 REDIVEMIRKNGVVGLGGSGFSTYIKY-----LNPEGIHTVLINGVECEPYLTTDYHFMF 180

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            +P    +G      A       I ++    + +  L+  +DE                 
Sbjct: 181 DQPERFFDGISFLMKAADVKKGIIAIKKGKKKLKAFLEQKIDEYQVRD------------ 228

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I V+    AY  G E  L++++ G++   RL    P+ +G      TV+NV        
Sbjct: 229 QISVYEVPDAYPLGWEKVLIKTITGREYD-RL----PSELGF-----TVSNV-------- 270

Query: 220 ILRRGASWYSGFGRENNRG--TKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
               G +  + F   +NR    +L ++SG  +  P      +     ELI+     + GG
Sbjct: 271 ----GTAIATSFAVRDNRPFIRRLVTVSGEGIKRPGLYYVRIGTPAKELIQ-----LAGG 321

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM------------D 324
           +      I     +  +  G M G +M  D   +     G   ++V+            D
Sbjct: 322 Y------IDDADEIKIIVGGPMMGGVMRSD---DFVISRGVNGIVVLPTKKKEGPDKGFD 372

Query: 325 RSTDIIKAIWRLSVFYKHE-----SCGQCT 349
           R  DI+   ++  V  + +     SCG+CT
Sbjct: 373 RIKDILWPNYKKEVIMEKDEQPCVSCGRCT 402


>gi|166031622|ref|ZP_02234451.1| hypothetical protein DORFOR_01322 [Dorea formicigenerans ATCC
           27755]
 gi|166028599|gb|EDR47356.1| hypothetical protein DORFOR_01322 [Dorea formicigenerans ATCC
           27755]
          Length = 610

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR G G +  ++ +++ G A    +D + + +K+I     CA+G +AA    
Sbjct: 50  QTCGKCVPCRVGLGQLNHLIRKVLNGNATMETLDTMEQTAKSIMESADCAIGYEAAHMVY 109

Query: 402 QGLI 405
           +GLI
Sbjct: 110 KGLI 113


>gi|282601058|ref|ZP_05980581.2| Na(+)-translocating NADH-quinone reductase, A subunit
           [Subdoligranulum variabile DSM 15176]
 gi|282570492|gb|EFB76027.1| Na(+)-translocating NADH-quinone reductase, A subunit
           [Subdoligranulum variabile DSM 15176]
          Length = 456

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 43/240 (17%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +  ++  ++A GL G GGAGF T +K +      +D    L++NA E EP    D   M 
Sbjct: 131 KASLLAAIQACGLVGVGGAGFPTHVKLA------ADTVDTLLINAAECEPYLTTDCREML 184

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
               T+I G       I A   +  +    I    +    +D+ Y+     + +  G  V
Sbjct: 185 ECSDTIISG-------IAAVMKYCNIPNCIIGIERNKPECIDQMYSL----TRNMSGVSV 233

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP----FPANVGLYGCPTTVNNVESIA 215
             +       Y  G E  L+E+  G++  P++ P      PA+VG       + NV S++
Sbjct: 234 KPLPTR----YPQGAEKTLVETCTGRE-VPQVGPSGKAGLPADVGCI-----IMNVTSVS 283

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            +   L+ G              TK  ++ G  +  P  VE  +   + ++IE  CGGI+
Sbjct: 284 TLGKYLKTGMPLT----------TKRVTVEGDAIAKPQNVEVPIGTLYRDVIE-ACGGIK 332


>gi|293374729|ref|ZP_06621037.1| electron transport complex, RnfABCDGE type, C subunit [Turicibacter
           sanguinis PC909]
 gi|292646643|gb|EFF64645.1| electron transport complex, RnfABCDGE type, C subunit [Turicibacter
           sanguinis PC909]
          Length = 462

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 128/330 (38%), Gaps = 73/330 (22%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ I+  ++ +G+ G GG+GFST +K+     +  +  H +++N  E EP    D   M 
Sbjct: 126 REDIVEMIRKNGVVGLGGSGFSTYIKY-----LNPEGIHTVLINGVECEPYLTTDYHFMF 180

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            +P    +G      A       I ++    + +  L+  +DE                 
Sbjct: 181 DQPERFFDGISFLMKAADVKKGIIAIKKGKKKLKAFLEQKIDEYQVRD------------ 228

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I V+    AY  G E  L++++ G++   RL    P+ +G      TV+NV        
Sbjct: 229 QISVYEVPDAYPLGWEKVLIKTITGREYD-RL----PSELGF-----TVSNV-------- 270

Query: 220 ILRRGASWYSGFGRENNRG--TKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
               G +  + F   +NR    +L ++SG  +  P      +     ELI+     + GG
Sbjct: 271 ----GTAIATSFAVRDNRPFIRRLVTVSGEGIKRPGLYYVRIGTPAKELIQ-----LAGG 321

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM------------D 324
           +      I     +  +  G M G +M  D   +     G   ++V+            D
Sbjct: 322 Y------IDDADEIKIIVGGPMMGGVMRSD---DFVISRGVNGIVVLPTKKKEGPDKGFD 372

Query: 325 RSTDIIKAIWRLSVFYKHE-----SCGQCT 349
           R  DI+   ++  V  + +     SCG+CT
Sbjct: 373 RIKDILWPNYKKEVIMEKDEQPCVSCGRCT 402


>gi|300871307|ref|YP_003786180.1| NADH dehydrogenase [Brachyspira pilosicoli 95/1000]
 gi|300689008|gb|ADK31679.1| NADH dehydrogenase [Brachyspira pilosicoli 95/1000]
          Length = 378

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 64/328 (19%), Positives = 127/328 (38%), Gaps = 44/328 (13%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L++NA        KD+  + + PH +++  ++ +  +      I +R  +   +E+L  A
Sbjct: 69  LIINAYSFGYLVFKDKFFIDNNPHLILDSAILIAKILNIKNIDILIRSYY--NKETLINA 126

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           + E  A  L     K+  +++I ++                           +  F  N+
Sbjct: 127 IVE--AEDLY----KIESEININIYD--------------------------ENNFRENI 154

Query: 200 GLYGC--PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            +Y         ++E++         G   +S +G EN++GT L S SG +      E  
Sbjct: 155 NIYFIERQKYALDLETVIQFGYFAHMGLENFSKYGNENHKGTCLISFSGDIPNVNLHEFQ 214

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              +F+E+I K  G I    D       G  + P      +    + YD   E+  G G 
Sbjct: 215 FGSSFNEII-KASGYISYNNDIKCVFTNGFLNAPT-TLESLSNKSLSYD---EINIGNGG 269

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI-D 376
              I  +R   +++ + ++  F K  SC  C PC  G       + +++ G +   +  +
Sbjct: 270 ICFIAENRC--MLRVVMKIIQFAKSISCTNCMPCNYGFNLCEYYLNKIILGKSNSNDYKN 327

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGL 404
           L+  V   I+G +   + + A   I+ +
Sbjct: 328 LVNAVEMIIKGSSCVYIYNIAKCIIETI 355


>gi|28210724|ref|NP_781668.1| rnfC/nqrF [Clostridium tetani E88]
 gi|28203162|gb|AAO35605.1| rnfC/nqrF [Clostridium tetani E88]
          Length = 449

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 14/82 (17%)

Query: 27  GHWDNVDKILEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           G ++ V+    + RD+       IIN VK +G+ G GGA F T +K +  P     +  Y
Sbjct: 117 GQYEEVET---QKRDYTKLSNEEIINIVKEAGIVGMGGATFPTNVKLTPPP---DKKIEY 170

Query: 80  LVVNADESEPG-TCKDRDIMRH 100
           +VVNA E EP  TC  R ++ H
Sbjct: 171 IVVNAAECEPYLTCDHRMMLEH 192


>gi|51892034|ref|YP_074725.1| Na+-transporting NADH-quinone reductase subunit 1 [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855723|dbj|BAD39881.1| Na+-transporting NADH-quinone reductase subunit 1 [Symbiobacterium
           thermophilum IAM 14863]
          Length = 446

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           WD   + L+    +I + V+ +GL G GGAGF   +K +  P      P  +++N  E E
Sbjct: 117 WDLDPESLDPA--FIRDRVRQAGLVGMGGAGFPAAVKLTPKP---GTEPDVVILNGAECE 171

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           P    D  +M   P  ++ G  +   A GA    I V
Sbjct: 172 PAITSDHRLMLEHPEQVVLGLRLFMRASGAKRGIIAV 208


>gi|330502370|ref|YP_004379239.1| electron transport complex protein RnfC [Pseudomonas mendocina
           NK-01]
 gi|328916656|gb|AEB57487.1| electron transport complex protein RnfC [Pseudomonas mendocina
           NK-01]
          Length = 814

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  ++ +G+ G GGAGF T +K +  P   + + H L++N  E EP    D  +MR   
Sbjct: 130 LLTLIREAGINGLGGAGFPTAVKLTARP---TQKIHTLIINGTECEPYITADDVLMRERA 186

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             L+ G  + +  I      I
Sbjct: 187 AELVAGIEVLAHLIQPQQVLI 207


>gi|281412300|ref|YP_003346379.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           naphthophila RKU-10]
 gi|281373403|gb|ADA66965.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           naphthophila RKU-10]
          Length = 435

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 21/198 (10%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ ++  +K +G+ G GGA F T +K S  P+   D    L++N  E EP    D  +M 
Sbjct: 119 KEEVLEVIKKAGIVGLGGAMFPTHVKLSPPPEKKVDT---LIINGAECEPVLTIDHRLML 175

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                +++G +I    +G   A + V    I    +L+                  GY V
Sbjct: 176 ERAEDILQGILIMMKVLGVQKAVVGVESNKIDAYHNLKKVFK--------------GYPV 221

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D+ +      Y  G E  L+ ++ G+   PR   P    V +    T V   E++     
Sbjct: 222 DVALLK--TKYPQGAEKQLIYAITGRV-VPRGGLPMDVGVVVQNVGTCVAVKEAVVDGKP 278

Query: 220 ILRRGASWYSGFGRENNR 237
           ++ RG +  SG   +N R
Sbjct: 279 LVERGVT-VSGDAVKNPR 295


>gi|228470498|ref|ZP_04055365.1| electron transport complex protein RnfC [Porphyromonas uenonis
           60-3]
 gi|228307794|gb|EEK16750.1| electron transport complex protein RnfC [Porphyromonas uenonis
           60-3]
          Length = 412

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II+ +   G+ G GGA F T +K S  P   +D   Y+++NA E EP    D  +MR + 
Sbjct: 126 IIDRIAEMGIVGMGGATFPTHVKLSPPPGQSAD---YVIINAVECEPYLTSDDALMRVKA 182

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             ++ GC I   A  A    I
Sbjct: 183 MEIMVGCAIIMKAANAPRTLI 203


>gi|227872438|ref|ZP_03990781.1| glutamate synthase (NADPH) small subunit [Oribacterium sinus F0268]
 gi|227841717|gb|EEJ52004.1| glutamate synthase (NADPH) small subunit [Oribacterium sinus F0268]
          Length = 611

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           +SCG+CTPCR G G +  ++E ++ G A    +  + + ++ I     CA+G  AA  + 
Sbjct: 50  QSCGKCTPCRVGLGQLEGLIESVLDGSADMDTLKTIEKTAEGIYNSADCAIGFEAAKMVL 109

Query: 403 GLIKNFRPLIEERIDQYHRC 422
             I+ F     E + Q+ RC
Sbjct: 110 RGIRGFYEDYAEHV-QHGRC 128


>gi|221369207|ref|YP_002520303.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides KD131]
 gi|221162259|gb|ACM03230.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides KD131]
          Length = 517

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 39/243 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99
           + I  +V  +G+ G GGA F + +K +   K      H LV+N  E EP  TC DR +MR
Sbjct: 136 EEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYDL---HTLVINGAECEPYLTCDDR-LMR 191

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                + +G  I + A+G     + +         ++Q                    D+
Sbjct: 192 ERAEEIADGVGIMARALGVRQIVVAIESNKAEAISAMQ--------------RFDRALDI 237

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            + V      Y  G E  L++ L G++   R      A++G+      V+N  +   V  
Sbjct: 238 PLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVHL 289

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +R G    S          ++ ++SG  V  P  V   +     E+I  +CGG     D
Sbjct: 290 AVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVI-AYCGGYAEEPD 338

Query: 279 NLL 281
            LL
Sbjct: 339 RLL 341


>gi|331091237|ref|ZP_08340078.1| hypothetical protein HMPREF9477_00721 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404684|gb|EGG84223.1| hypothetical protein HMPREF9477_00721 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 444

 Score = 44.3 bits (103), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           V  + E  ++ II+ +K +G+ G GGAGF T +K S  PK   ++  Y++ N  E EP  
Sbjct: 119 VKPLEEMTKEEIIDRIKEAGIVGMGGAGFPTHVKLS--PKE-PEKIDYVIANCAECEPYI 175

Query: 92  CKDRDIMRHEPHTLIEG 108
             D   M   P  LI G
Sbjct: 176 TADYRRMLENPEELISG 192


>gi|206900502|ref|YP_002250813.1| nitrogen fixation iron-sulphur protein rnfc [Dictyoglomus
           thermophilum H-6-12]
 gi|206739605|gb|ACI18663.1| nitrogen fixation iron-sulphur protein rnfc [Dictyoglomus
           thermophilum H-6-12]
          Length = 437

 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           +W N+        D I   ++ +G+ G GGA F T +K S  P+   D    +++N  E 
Sbjct: 116 NWQNLSP------DEIKTRIREAGIVGLGGAAFPTHVKVSPPPEKKIDT---VILNGAEC 166

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
           EP    D  +M  +P  +IEG  I  + +G     I V        E L+   D
Sbjct: 167 EPYLTIDYRLMLEKPELIIEGLRILMYVLGVKRGIIGVEDNKKDAVEVLKKYAD 220


>gi|39995617|ref|NP_951568.1| Fe(III) reductase subunit beta [Geobacter sulfurreducens PCA]
 gi|39982380|gb|AAR33841.1| Fe(III) reductase, beta subunit [Geobacter sulfurreducens PCA]
 gi|298504639|gb|ADI83362.1| Fe(III) reductase, beta subunit [Geobacter sulfurreducens KN400]
          Length = 672

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDI-IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           DG +++ + +G   +I+ D   D+   A   +        CG+CTP ++GT  +  V+  
Sbjct: 34  DGERQIAAFMGWDGIILYDLKVDVPAMAAEYMKRVQTQYCCGKCTPGKKGTKVLADVLAA 93

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +++G A + ++D + +++ ++     C L  ++  P+   +K+FR
Sbjct: 94  IIEGRATEADLDTIDDLA-DLLTNCKCTLCQSSTIPVLDAVKHFR 137


>gi|297578621|ref|ZP_06940549.1| electron transport complex protein RnfC [Vibrio cholerae RC385]
 gi|297536215|gb|EFH75048.1| electron transport complex protein RnfC [Vibrio cholerae RC385]
          Length = 862

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 34/180 (18%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRSEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
             H +I+G  I    +      I +         +LQ A                  D  
Sbjct: 190 YAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVTALQQA----------------AQDKP 233

Query: 161 IIVHHGAGAYICGEETAL---LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           +++      Y  G E  L   L +LE  KG        PA++GL      V NV S+  +
Sbjct: 234 MVIRVIPTKYPSGGEKQLIKILTNLEVPKGG------IPADIGLM-----VQNVGSLQAI 282


>gi|260655144|ref|ZP_05860632.1| Fe(III) reductase, beta subunit [Jonquetella anthropi E3_33 E1]
 gi|260630066|gb|EEX48260.1| Fe(III) reductase, beta subunit [Jonquetella anthropi E3_33 E1]
          Length = 635

 Score = 43.9 bits (102), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 336 LSVFYKH----ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           L+V + H    +SCG+CTPCR G   +  ++  ++ G  Q   +  +  ++++I   + C
Sbjct: 64  LAVSFLHICHSQSCGKCTPCRVGLNRLQDLINAVLSGKVQLDALQTIETMAESIYLSSDC 123

Query: 392 ALGDAAAWPIQGLIKNFRPLIEERI 416
           A+G  AA  +   ++ FR   EE +
Sbjct: 124 AIGQEAARMVLMGVRGFREDYEEHV 148


>gi|313638342|gb|EFS03561.1| PduS type ferredoxin, putative [Listeria seeligeri FSL S4-171]
          Length = 455

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 63/318 (19%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 7   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 59

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A +  +  +  E  +LQAA+ E               D  + 
Sbjct: 60  VETIKAIEMVKSQVGAEFAVVATKRYYTEEIAALQAAIQE--------------LDSSVT 105

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 106 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 149

Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
                 W      +++     K  +++G V  P  ++  +   F+      C    GG  
Sbjct: 150 ------WNVFHAIDDDAPVIRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGT- 197

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL-- 336
           NL       S    L  G M G + +   + E      T+ +IV + +  + K  ++   
Sbjct: 198 NL-------SEYLFLDGGPMMGKLNNQSTISEKVVTKTTSGLIVTEDTGYLHKLHYQTVE 250

Query: 337 SVFYKHES-CGQCTPCRE 353
            +F + +S C QCT C +
Sbjct: 251 QIFNETKSACIQCTLCTD 268


>gi|91228908|ref|ZP_01262808.1| electron transport complex protein RnfC [Vibrio alginolyticus
           12G01]
 gi|91187539|gb|EAS73871.1| electron transport complex protein RnfC [Vibrio alginolyticus
           12G01]
          Length = 878

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 32/179 (17%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWS--FMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           D +I+ ++ +G+ G GGAGF T  K    F       R   L+VNA E EP    D  +M
Sbjct: 134 DALIDVIRLAGISGMGGAGFPTAKKIQSGFA------RTEILIVNAAECEPYITSDDKLM 187

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           +     LI+G  I    +      I +        ++L+AA                  +
Sbjct: 188 QEHAEELIQGIEIVEHILTPKLTIIGIEDNKPEAIKALEAA----------------AIN 231

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
            DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  +
Sbjct: 232 KDIVIRVIPTKYPSGGEKQLIKILTNKEVPSGA---IPADIGIL-----VQNVGSLYAI 282


>gi|302381047|ref|ZP_07269507.1| putative electron transport complex protein RnfC [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311094|gb|EFK93115.1| putative electron transport complex protein RnfC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 442

 Score = 43.9 bits (102), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 19/167 (11%)

Query: 21  SDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           SD ++  G+ +  D   +  ++ I+  +K +G+ G GGAGF T +K +  P V   +   
Sbjct: 103 SDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDV---KIEQ 159

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +++N  E EP    D+  M   P   I G  I    +     +I V        ++ Q A
Sbjct: 160 VILNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGV-------EDNKQKA 212

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           +      G+L + SK   ++ I        Y  G+E  L+ ++ GKK
Sbjct: 213 I------GILKNASKDEKNISIC--SVKTKYPQGDERRLINAITGKK 251


>gi|225027769|ref|ZP_03716961.1| hypothetical protein EUBHAL_02028 [Eubacterium hallii DSM 3353]
 gi|224954915|gb|EEG36124.1| hypothetical protein EUBHAL_02028 [Eubacterium hallii DSM 3353]
          Length = 617

 Score = 43.9 bits (102), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 39/82 (47%)

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
            +  ++CG+C PCR G G +  ++E ++ G A    + L+   +K I     CA+G  A 
Sbjct: 50  LFHAQTCGKCVPCRIGLGVLEDMLEDVLDGKATLETLSLIERTAKAIYDSADCAIGYEAG 109

Query: 399 WPIQGLIKNFRPLIEERIDQYH 420
             +   ++ FR    E I   H
Sbjct: 110 RMVLKGLEGFREDFIEHITNGH 131


>gi|254433139|ref|ZP_05046647.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Nitrosococcus oceani AFC27]
 gi|207089472|gb|EDZ66743.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Nitrosococcus oceani AFC27]
          Length = 491

 Score = 43.5 bits (101), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
           N ++ +G+ G GGAGF T +K +  P+    +   L++N  E EP    D  +MR     
Sbjct: 107 NLIRQAGIVGLGGAGFPTFIKLNPGPQ---PKVKTLILNGAECEPYITCDEALMRERAEE 163

Query: 105 LIEGCVIASFAIGA-HC 120
           +I+G  I + A+ A HC
Sbjct: 164 IIQGAAIMAHALNAYHC 180


>gi|77164681|ref|YP_343206.1| electron transport complex protein RnfC [Nitrosococcus oceani ATCC
           19707]
 gi|76882995|gb|ABA57676.1| Electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus oceani ATCC 19707]
          Length = 515

 Score = 43.5 bits (101), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
           N ++ +G+ G GGAGF T +K +  P+    +   L++N  E EP    D  +MR     
Sbjct: 131 NLIRQAGIVGLGGAGFPTFIKLNPGPQ---PKVKTLILNGAECEPYITCDEALMRERAEE 187

Query: 105 LIEGCVIASFAIGA-HC 120
           +I+G  I + A+ A HC
Sbjct: 188 IIQGAAIMAHALNAYHC 204


>gi|291563596|emb|CBL42412.1| electron transport complex, RnfABCDGE type, C subunit
           [butyrate-producing bacterium SS3/4]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I N VK +G+ G GGAGF T +K +  PK  +   H ++VNA E EP    D  +M 
Sbjct: 122 KEEIRNIVKEAGIVGLGGAGFPTNVKLA--PKDDNAIDH-IIVNAAECEPYLTSDYRLMM 178

Query: 100 HEPHTLIEG 108
            +P  LI G
Sbjct: 179 EQPERLIGG 187


>gi|332883529|gb|EGK03812.1| hypothetical protein HMPREF9456_01879 [Dysgonomonas mossii DSM
           22836]
          Length = 430

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 18/159 (11%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + +I  +K +G+ G+GGA F T +K+S    V   + H  +VN  E EP    D  +M  
Sbjct: 115 EELIERIKDTGIVGQGGAQFPTAIKYS----VGEHKIHTFIVNGAECEPYLTSDYSLMAE 170

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               L +G  I    + A    I +  +    RE L+A     +A  L     K GY   
Sbjct: 171 RTEELFKGIDIIKKILNADNVIIGIEHQ---NRELLKA-----FAPYLQQKEHK-GYKAI 221

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++       Y  G E  L++S  G +  PR K P  A +
Sbjct: 222 LL----PDQYPQGGELQLIKSATGIE-LPRSKRPAEAGI 255


>gi|154503206|ref|ZP_02040266.1| hypothetical protein RUMGNA_01030 [Ruminococcus gnavus ATCC 29149]
 gi|153796200|gb|EDN78620.1| hypothetical protein RUMGNA_01030 [Ruminococcus gnavus ATCC 29149]
          Length = 457

 Score = 43.5 bits (101), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 123/310 (39%), Gaps = 60/310 (19%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           ++ +G+ G GGAGF T  K          R   +++N  E EP     R ++      ++
Sbjct: 19  LQQNGIVGAGGAGFPTYAKLD-------QRAETIILNCAECEPLLRLHRQLLEKYAREIV 71

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
           +   +   A+GA    I ++  + +  E++++ + E Y    LG   ++           
Sbjct: 72  DTFHLVGQAVGAKEVIIGIKKAYKQTIEAVESVIGE-YPEVRLGLLDEV----------- 119

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
              Y  G+E  L+  + GK  +P    P  + V ++       NVE+I  V         
Sbjct: 120 ---YPAGDEVVLIYEVTGKVVRPG-GLPIESGVAVF-------NVETIYNV--------- 159

Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
            +    ++     KL S+   V +P TV   +  T +E++                 + G
Sbjct: 160 -WRAMNQQTPVVDKLVSVVAEVEHPVTVRVPIGTTIEEVV----------------ALAG 202

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK-AIWRLSVFYKHES- 344
           G++V   P   + G +M + G         T AV+V+ +   ++K    + S+  K  + 
Sbjct: 203 GTTVK-DPVYFIGGPMMGFIGSGSQPVTKTTNAVLVLPQDHYLVKRKRSKSSIDMKRAAA 261

Query: 345 -CGQCTPCRE 353
            C QC+ C +
Sbjct: 262 CCCQCSMCTD 271


>gi|226944038|ref|YP_002799111.1| electron transport complex protein RnfC [Azotobacter vinelandii DJ]
 gi|226718965|gb|ACO78136.1| Electron transport complex, subunit C [Azotobacter vinelandii DJ]
          Length = 688

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  ++ +G+ G GGAGF T +K +  P+    + H L+VN  E EP    D  +MR   
Sbjct: 129 LLERIRQAGISGLGGAGFPTAVKLTARPQ---RKIHTLIVNGAECEPYITADDRLMRERA 185

Query: 103 HTLIEGCVI 111
             LI G  I
Sbjct: 186 AELIIGIDI 194


>gi|15643016|ref|NP_228058.1| electron transport complex protein, putative [Thermotoga maritima
           MSB8]
 gi|4980743|gb|AAD35335.1|AE001708_3 electron transport complex protein, putative [Thermotoga maritima
           MSB8]
          Length = 451

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 21/198 (10%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I+  +K +G+ G GGA F T +K S  P+   D    L+VN  E EP    D  +M 
Sbjct: 135 KEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVDT---LIVNGAECEPVLTIDHRLML 191

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                +++G +I    +G   A + V    +    +L+                  GY V
Sbjct: 192 ERAEDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLKKVFK--------------GYPV 237

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D+ +      Y  G E  L+ ++ G+   PR   P    V +    T V   E++     
Sbjct: 238 DVALLR--TKYPQGAEKQLIYAITGRM-VPRGGLPMDVGVVVQNVGTCVAVKEAVVDGKP 294

Query: 220 ILRRGASWYSGFGRENNR 237
           ++ RG +  SG   +N +
Sbjct: 295 LVERGMT-VSGDAVKNQK 311


>gi|239787506|emb|CAX83976.1| Electron transport complex protein [uncultured bacterium]
          Length = 490

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 41/251 (16%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-T 91
           D      +D I + V A+G+ G GGA F   +K +      +++   L++N  E EP  T
Sbjct: 118 DPFTASAKD-ISDRVAAAGIVGLGGAAFPASVKLTLG---MNNKLETLLLNGAECEPYLT 173

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
           C DR +MR     +I+G  I + A+GA    + +      E+   Q AVD    +     
Sbjct: 174 CDDR-VMREYADEVIDGARIMAHALGAPKIVVAI------EQNKPQ-AVDRMVQAAKAFP 225

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
           N ++     + V      Y  G E  L +++ G +   R      A++G+      V+NV
Sbjct: 226 NIEIA---SVPVQ-----YPMGSEKHLTQAITGLETPAR---KLTADLGV-----VVHNV 269

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIEKHC 270
            +   V   +R G    S          ++ ++S G V  P  VE  +     EL+   C
Sbjct: 270 ATARAVHHAIRFGRPLLS----------RVVAVSGGAVAQPKNVEVPLGTLVSELV-AFC 318

Query: 271 GGIRGGWDNLL 281
           GG+ G    L+
Sbjct: 319 GGLVGTPARLI 329


>gi|113461204|ref|YP_719273.1| electron transport complex protein RnfC [Haemophilus somnus 129PT]
 gi|112823247|gb|ABI25336.1| electron transport complex protein [Haemophilus somnus 129PT]
          Length = 659

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 10/115 (8%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           ++  L   R+ +I+++  +G+ G GGA F T  K     +  +++   L++N  E EP  
Sbjct: 128 IEDFLTLSREQLIDKIYQAGIAGLGGAVFPTAAKI----RSANNKVKLLIINGAECEPYI 183

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV---RGEFIRE-RESLQAAVD 141
           TC DR +MR     +IEG  I  + +    A I +   + E I   R+SL  A D
Sbjct: 184 TCDDR-LMRDYSEEIIEGIRILRYILRPEKAVIAIEDNKPEAIAALRQSLHGAND 237


>gi|170717802|ref|YP_001784865.1| electron transporter subunit RnfC [Haemophilus somnus 2336]
 gi|168825931|gb|ACA31302.1| electron transport complex, RnfABCDGE type, C subunit [Haemophilus
           somnus 2336]
          Length = 706

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 28  HWDN---VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
            W N   ++  L   R+ +I+++  +G+ G GGA F T  K     +  +++   L++N 
Sbjct: 121 QWRNRQPIEDYLTLSREQLIDKIYQAGIAGLGGAVFPTAAKI----RSANNKVKLLIING 176

Query: 85  DESEPG-TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
            E EP  TC DR +MR     +IEG  I  + +    A I +
Sbjct: 177 AECEPYITCDDR-LMRDYSEEIIEGIRILRYILRPEKAVIAI 217


>gi|313681398|ref|YP_004059136.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154258|gb|ADR32936.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 678

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/108 (20%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMR 360
           ++Y+      + +G   V + +   D+++     +  Y+   E+CG+C P R G   +  
Sbjct: 33  LEYNEHAHSKAFIGWDGVALFNPDVDVVRLATEYAAQYQVYSEACGRCAPGRWGGRILYD 92

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +++++ +G     +++ L EVS+ ++  + C +G     P+  L+ +F
Sbjct: 93  LLDKIARGEGSVSDMEHLKEVSRTMQETSKCEIGKTVPNPLLDLMTHF 140


>gi|126464670|ref|YP_001045783.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106481|gb|ABN79011.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 517

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 39/243 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99
           + I  +V  +G+ G GGA F + +K +   K      H LV+N  E EP  TC DR +MR
Sbjct: 136 EEIAAKVAEAGIVGMGGATFPSAVKLNLRSKYDL---HTLVINGAECEPYLTCDDR-LMR 191

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                + +G  I + A+G     + +         ++Q                    D+
Sbjct: 192 ERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQ--------------RFDRALDI 237

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            + V      Y  G E  L++ L G++   R      A++G+      V+N  +   V  
Sbjct: 238 PLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVHL 289

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +R G    S          ++ ++SG  V  P  V   +     E+I  +CGG     D
Sbjct: 290 AVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVI-AYCGGYAEEPD 338

Query: 279 NLL 281
            LL
Sbjct: 339 RLL 341


>gi|291522098|emb|CBK80391.1| electron transport complex, RnfABCDGE type, C subunit [Coprococcus
           catus GD/7]
          Length = 442

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-RDIM 98
           ++  I  VK SGL G GGAGF   +K +  PK   D+  YL +NA E EP    D R+IM
Sbjct: 128 KEEFIEAVKQSGLVGLGGAGFPAHIKLN--PK---DKIEYLCINAAECEPYITADVREIM 182

Query: 99  RHEPHTL 105
            +  + L
Sbjct: 183 ENHENVL 189


>gi|289434387|ref|YP_003464259.1| propanediol utilization protein PduS [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170631|emb|CBH27171.1| propanediol utilization protein PduS [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 451

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 63/318 (19%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 3   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A +  +  +  E  +L+AA+ E               D  + 
Sbjct: 56  VETIKAIEMVKSQVGAEFAVVATKRYYTEEIAALRAAIQE--------------LDSSVT 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 145

Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
                 W      +++     K  +++G V  P  ++  +   F+      C    GG  
Sbjct: 146 ------WNVFHAIDDDAPVIRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGT- 193

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL-- 336
           NL       S    L  G M G + +   L E      T+ +IV + +  + K  ++   
Sbjct: 194 NL-------SEYLFLDGGPMMGKLNNQSSLAEKVVTKTTSGLIVTEDTGYLHKLHYQTVE 246

Query: 337 SVFYKHES-CGQCTPCRE 353
            +F + +S C QCT C +
Sbjct: 247 QIFNETKSACIQCTLCTD 264


>gi|160895200|ref|ZP_02075972.1| hypothetical protein CLOL250_02759 [Clostridium sp. L2-50]
 gi|156863079|gb|EDO56510.1| hypothetical protein CLOL250_02759 [Clostridium sp. L2-50]
          Length = 443

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 38/248 (15%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +NV  +    R+ I + +K +G+ G GGAGF + +K S  PK   D   Y++VN  E EP
Sbjct: 114 ENVRDLSTLYREDIKDMIKEAGIVGMGGAGFPSHVKLS--PK-NEDDIEYIIVNGAECEP 170

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D   M  E   LI G  I        C  ++ + + I        A+++     + 
Sbjct: 171 YLTSDYRRMLEETEKLILGLQI--------CVNLFDKAKGI-------IAIEDNKPEAIA 215

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
             +  L  +  I V      Y  G E  L+ +  G+    ++    PA+ G       V+
Sbjct: 216 KISEHLADNDKIEVKVLKTKYPQGAERQLIYATTGRYVNSKM---LPADAG-----CIVH 267

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           N ++I  +   +  G   Y          T++ +++G  +  PC +      +  E+IE 
Sbjct: 268 NTDTIVSIYEAVIEGKPLY----------TRIVTVTGDAIVNPCNLLVHNGTSCREIIEA 317

Query: 269 HCGGIRGG 276
             GG + G
Sbjct: 318 -AGGFKDG 324


>gi|317472986|ref|ZP_07932289.1| pyridine nucleotide-disulfide oxidoreductase [Anaerostipes sp.
           3_2_56FAA]
 gi|316899531|gb|EFV21542.1| pyridine nucleotide-disulfide oxidoreductase [Anaerostipes sp.
           3_2_56FAA]
          Length = 610

 Score = 43.1 bits (100), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR G G +  ++  ++ G A    + L+ + +++I     CA+G  AA  + 
Sbjct: 50  QTCGKCVPCRIGLGQLKNLINDVLDGKATIETLGLIRDTAQSIMDSADCAIGYEAANMVY 109

Query: 403 GLIKNFRPLIEERIDQYHRC 422
             +  FR    E I  Y+RC
Sbjct: 110 KGVIGFRDDYLEHI-MYNRC 128


>gi|251779641|ref|ZP_04822561.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083956|gb|EES49846.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 611

 Score = 43.1 bits (100), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAW 399
           + ++CG+C PCR G   +  +++ ++   A    IDL+ +++K +     CA+G +AA  
Sbjct: 48  QAQTCGKCVPCRIGLAQLENLIDDVLNRKATLETIDLIEKIAKVVIDSADCAIGYEAANM 107

Query: 400 PIQGLIKNFRPLIEERIDQYHRCNFQ 425
            ++G++      IE  ++    CN  
Sbjct: 108 VLKGIVGFKSDYIEHIVNNRCICNLN 133


>gi|226322497|ref|ZP_03798015.1| hypothetical protein COPCOM_00268 [Coprococcus comes ATCC 27758]
 gi|225209114|gb|EEG91468.1| hypothetical protein COPCOM_00268 [Coprococcus comes ATCC 27758]
          Length = 610

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
            D+ +A   L + + H +CG+C PCR G   +  ++  ++ G A    +DL+ E+S +I 
Sbjct: 37  VDMTRAF--LEMCHTH-TCGKCVPCRVGLWQLKNLLTDVMNGDATMETLDLMEELSVSIM 93

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
               CA+G  AA  +   +   R   EE + Q  RC  Q
Sbjct: 94  EGADCAIGYEAAHMVYKSLMGCREDYEEHVRQ-GRCTCQ 131


>gi|118442918|ref|YP_877660.1| rnfC/nqrF [Clostridium novyi NT]
 gi|118133374|gb|ABK60418.1| rnfC/nqrF [Clostridium novyi NT]
          Length = 439

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 135/352 (38%), Gaps = 72/352 (20%)

Query: 17  GKSLSDSMSR-GHWDNVDKILEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSF 68
           GKSL+  +   G ++ ++  + K +D+       II  VK +G+ G GGA F T +K + 
Sbjct: 92  GKSLAVIVENDGQYEEIE--MPKPKDYKTMSKEEIIELVKEAGVVGMGGATFPTNVKLAP 149

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
            P     +   ++VN  E EP    D  +M  E + ++EG  I          +I V   
Sbjct: 150 PP---DKKIDAIIVNGAECEPYLTCDHRLMLEETNMIVEGLKIILQIHPQAKGYIGVEDN 206

Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
                E+L+ A  +                 +I V      Y  G E  L+ S+  K+  
Sbjct: 207 KKNAIEALKQATKDIP---------------NIEVKALKTKYPQGAEKQLIYSV-MKREV 250

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH- 247
           P  K   PA+ G       V N+ ++  V   +  G    S          ++ +++G  
Sbjct: 251 PSGK--LPADAG-----CIVQNINTVREVYNAVVNGRPTIS----------RVVTVTGEA 293

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           +  P  +   + +++ EL++  C G +   +  + VI GG                    
Sbjct: 294 IKNPKNLRVRLGMSYKELVD-ACEGFK---EEAVKVISGGPM------------------ 331

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MG  + T  V V+  S+ I+    + +V  +  SC +C  C E     +
Sbjct: 332 ---MGMAVSTLEVPVIKGSSGILCLTEKQAVLPEESSCIRCGRCVEACPMFL 380


>gi|307249377|ref|ZP_07531370.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858599|gb|EFM90662.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 645

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+   H  +EG  I  + +      + +      + +++QA         L G
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           SN       DI +      Y  G    L++ L G
Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265


>gi|167745462|ref|ZP_02417589.1| hypothetical protein ANACAC_00153 [Anaerostipes caccae DSM 14662]
 gi|167655183|gb|EDR99312.1| hypothetical protein ANACAC_00153 [Anaerostipes caccae DSM 14662]
          Length = 610

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR G G +  ++  ++ G A    + L+ + +++I     CA+G  AA  + 
Sbjct: 50  QTCGKCVPCRIGLGQLKNLINDVLDGKATIETLGLIRDTAQSIMDSADCAIGYEAANMVY 109

Query: 403 GLIKNFRPLIEERIDQYHRC 422
             +  FR    E I  Y+RC
Sbjct: 110 KGVIGFRDDYLEHI-MYNRC 128


>gi|319940503|ref|ZP_08014848.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319806129|gb|EFW02878.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 622

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR+G   + ++M R+V   AQ  ++  L  +++ I   + CA+G DAA   +
Sbjct: 60  QTCGKCVPCRDGLPQLAKLMRRIVDCEAQPEDLGRLKTLAEFIRLGSDCAIGYDAAQMVL 119

Query: 402 QGLIK 406
           + L +
Sbjct: 120 ESLTR 124


>gi|307247153|ref|ZP_07529205.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856402|gb|EFM88553.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 684

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+   H  +EG  I  + +      + +      + +++QA         L G
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           SN       DI +      Y  G    L++ L G
Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265


>gi|307244979|ref|ZP_07527076.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253932|ref|ZP_07535784.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258386|ref|ZP_07540127.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306854144|gb|EFM86352.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863136|gb|EFM95078.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867570|gb|EFM99417.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 725

 Score = 43.1 bits (100), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+   H  +EG  I  + +      + +      + +++QA         L G
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           SN       DI +      Y  G    L++ L G
Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265


>gi|56476887|ref|YP_158476.1| electron transport complex protein rnfC (nitrogen fixation protein
           rnfC) [Aromatoleum aromaticum EbN1]
 gi|56312930|emb|CAI07575.1| Electron transport complex protein rnfC (Nitrogen fixation protein
           rnfC) [Aromatoleum aromaticum EbN1]
          Length = 508

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 111/276 (40%), Gaps = 52/276 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMRHE 101
           I   V A+G+ G GGA F + +K S   +   D    L++N  E EP  +C DR +MR  
Sbjct: 133 IGRRVSAAGIVGLGGAAFPSAVKLSGGREANVD---LLIINGGECEPFLSCDDR-LMRER 188

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
               I+G  I   A GA  A I +               D    +      +  G+   I
Sbjct: 189 AADAIDGVAIMLHATGAREARIGIE--------------DNKPEAIAAMRAAAAGHP-KI 233

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPF---PANVGLYGCPTTVNNVESIAVVP 218
            V      Y  G E  L+ +L G      L+ P    PA+VG+      V+NV +   V 
Sbjct: 234 RVEPVPTRYPMGSEKHLVLALTG------LEVPANGRPADVGV-----VVHNVATAVAVR 282

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGI---R 274
             +R G    S          +L +++G  V  P  VE  +    DE++E  CGG+   R
Sbjct: 283 DAVRFGRPLVS----------RLVTVNGACVREPGNVEVLIGTLADEVVE-FCGGLRADR 331

Query: 275 GGWDNLLAVIP-GGSSVPCL--PAGQMRGAIMDYDG 307
           G    LL   P  G  VP L  P  +  G I+  DG
Sbjct: 332 GAPARLLLGGPMTGMQVPSLRVPVIKGTGGILVLDG 367


>gi|307251697|ref|ZP_07533602.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860894|gb|EFM92902.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 685

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+   H  +EG  I  + +      + +      + +++QA         L G
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           SN       DI +      Y  G    L++ L G
Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265


>gi|307256193|ref|ZP_07537980.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865374|gb|EFM97270.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 661

 Score = 43.1 bits (100), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+   H  +EG  I  + +      + +      + +++QA         L G
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIEDN---KPQAIQAV-----EKALKG 238

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           SN       DI +      Y  G    L++ L G
Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265


>gi|303251991|ref|ZP_07338162.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649421|gb|EFL79606.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 729

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+   H  +EG  I  + +      + +      + +++QA         L G
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           SN       DI +      Y  G    L++ L G
Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265


>gi|310780118|ref|YP_003968450.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309749441|gb|ADO84102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 447

 Score = 43.1 bits (100), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 123/323 (38%), Gaps = 57/323 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ +++ +G+ G GGAGF T +K+S       D+  YL+VN  E EP    D+ +MR + 
Sbjct: 3   IVQKIREAGIVGAGGAGFPTHIKFSV------DKVDYLLVNGAECEPLLQIDKYLMREKA 56

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +I+        I A    I ++G++  E   L+ A+        L S  K        
Sbjct: 57  SEIIKILEQLGDRIQAKEIHIALKGKYKSEITELENAIKN------LNSRVK-------- 102

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +      Y  G+E  ++  + G +  P    P    V +    T VN             
Sbjct: 103 IFKMGTYYPAGDEQQIVFEVTG-RTVPEAGIPLDVGVIVTNVGTLVN------------- 148

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                Y     +     K  SI G V  P  ++  + +TF++ IE   G      DN   
Sbjct: 149 ----IYEAVDSDKPVVDKCLSIHGEVKKPLIIKTPIGMTFEKCIEAAGG---ATIDNYKI 201

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
           ++           G M G ++  + LK+      T A+IV+     +   I+R     KH
Sbjct: 202 IV----------GGPMMGKVIVKESLKKEVVTKTTGALIVVPEDHYM---IYRNGKTVKH 248

Query: 343 ---ESCGQCTPCREGTGWMMRVM 362
              E+   C  CR  T    R +
Sbjct: 249 IVNEAKSACIQCRMCTDLCPRYL 271


>gi|307260625|ref|ZP_07542317.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869702|gb|EFN01487.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 770

 Score = 42.7 bits (99), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+   H  +EG  I  + +      + +      + +++QA         L G
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           SN       DI +      Y  G    L++ L G
Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265


>gi|53728861|ref|ZP_00348259.1| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207655|ref|YP_001052880.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae L20]
 gi|126096447|gb|ABN73275.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 770

 Score = 42.7 bits (99), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+   H  +EG  I  + +      + +      + +++QA         L G
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVLRPEEVVLAIED---NKPQAIQAV-----EKALKG 238

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           SN       DI +      Y  G    L++ L G
Sbjct: 239 SN-------DITLRVIPTIYPSGASDQLVQVLTG 265


>gi|303250916|ref|ZP_07337107.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650222|gb|EFL80387.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 770

 Score = 42.7 bits (99), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAI 116
           TC DR +M+   H  +EG  I  + +
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVL 212


>gi|165975623|ref|YP_001651216.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165875724|gb|ABY68772.1| putative iron-sulfur binding NADH dehydrogenase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 770

 Score = 42.7 bits (99), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAI 116
           TC DR +M+   H  +EG  I  + +
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVL 212


>gi|190149438|ref|YP_001967963.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262757|ref|ZP_07544384.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914569|gb|ACE60821.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871902|gb|EFN03619.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 770

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAI 116
           TC DR +M+   H  +EG  I  + +
Sbjct: 188 TCDDR-LMQDYTHEFLEGIRILRYVL 212


>gi|168186752|ref|ZP_02621387.1| electron transport complex protein RnfC [Clostridium botulinum C
           str. Eklund]
 gi|169295307|gb|EDS77440.1| electron transport complex protein RnfC [Clostridium botulinum C
           str. Eklund]
          Length = 439

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 121/321 (37%), Gaps = 62/321 (19%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ II  VK +G+ G GGA F T +K +  P    D    ++VN  E EP    D  +M 
Sbjct: 121 KEEIIELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIIVNGAECEPYLTCDHRLML 177

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            E + ++EG  +          +I +        E+L+ A  +                 
Sbjct: 178 EETNMIVEGLKVILHIHPQAKGYIGIEDNKKNAIEALKEATKDIP--------------- 222

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I V      Y  G E  L+ S+  K+  P  K   PA+ G       V N+ ++  V  
Sbjct: 223 NIEVKALKTKYPQGAEKQLIYSV-MKREVPSGK--LPADAG-----CIVQNINTVREVYN 274

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +  G    S          ++ +I+G  +  P  +   + +++ EL+E  C G +   +
Sbjct: 275 AVVNGRPTIS----------RVVTITGEAIKNPKNLRVRLGMSYRELVEA-CEGFK---E 320

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
             + VI GG                       MG  + T  V V+  S+ I+    + +V
Sbjct: 321 EAVKVISGGPM---------------------MGMAISTLDVPVIKGSSGILCLTEKQAV 359

Query: 339 FYKHESCGQCTPCREGTGWMM 359
             +  SC +C  C E     +
Sbjct: 360 LPEESSCIRCGRCVEACPMFL 380


>gi|160932756|ref|ZP_02080145.1| hypothetical protein CLOLEP_01597 [Clostridium leptum DSM 753]
 gi|156867830|gb|EDO61202.1| hypothetical protein CLOLEP_01597 [Clostridium leptum DSM 753]
          Length = 444

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 130/354 (36%), Gaps = 59/354 (16%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           W+ ++    +    ++   +ASGL G GGAGF   +K + +P+    +   L++N  E E
Sbjct: 111 WEGLEPPKVETHQDLVKAARASGLVGLGGAGFPAHIKLN-VPE--GRKIDTLIINVAECE 167

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D          ++ G  +    +      I V     + +  +   + E   S  
Sbjct: 168 PYITADHREALENSWDVLSGIYLVKDLLNIDRTLIAVE----KNKPDVIKVLSEIAYSDT 223

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
               +K      + V      Y  G E  L+++  G++  P      P++VG       V
Sbjct: 224 RDPENK------VRVLPLKARYPQGAEKVLVQACTGRRIGPGK---LPSDVGCL-----V 269

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
            NV SIA +   L+ G    S          K  ++ G  V  P  V   +    +++IE
Sbjct: 270 MNVTSIAFLSRYLKTGMPLVS----------KRITVDGSAVMEPKNVIVPLGTPIEKVIE 319

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
             CGG RG    +L              G M G  +D D L             V+ ++ 
Sbjct: 320 -FCGGYRGDPAKILM------------GGPMMGLALDSDALP------------VLKQNN 354

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
            I+    + +V     +C  C  C EG    M +M   +      ++ID L ++
Sbjct: 355 AILAFQEQDAVLPAPTACIHCGRCVEGCP--MHLMPPEISRAVTTKDIDQLQKL 406


>gi|327479772|gb|AEA83082.1| electron transport complex protein RnfC [Pseudomonas stutzeri DSM
           4166]
          Length = 827

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R  ++  ++ +G+ G GGAGF T +K +  P   + R   L++N  E EP    D  +MR
Sbjct: 126 RPALLELIRQAGISGLGGAGFPTAVKLTPPP---TQRIRTLIINGTECEPYITADDLLMR 182

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
            +   L+ G  I +  +      I +         +++AA+ E
Sbjct: 183 EKAAELVAGIEILAHLVQPQDVLIGIEDNKPEAIAAVRAAIGE 225


>gi|262393720|ref|YP_003285574.1| electron transport complex protein RnfC [Vibrio sp. Ex25]
 gi|262337314|gb|ACY51109.1| electron transport complex protein RnfC [Vibrio sp. Ex25]
          Length = 916

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 24/148 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWS--FMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           D +I+ ++ +G+ G GGAGF T  K    F       R   L+VNA E EP    D  +M
Sbjct: 134 DALIDIIRLAGISGMGGAGFPTAKKIQSGFA------RTEILIVNAAECEPYITSDDKLM 187

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           +     LI+G  I    +      I +        ++L+AA                  +
Sbjct: 188 QEHAEELIQGIEIVEHILTPKLTIIGIEDNKPEAIKALEAA----------------ALN 231

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKK 186
            DI++      Y  G E  L++ L  K+
Sbjct: 232 KDIVIRVIPTKYPSGGEKQLIKILTNKE 259


>gi|146281594|ref|YP_001171747.1| electron transport complex protein RnfC [Pseudomonas stutzeri
           A1501]
 gi|145569799|gb|ABP78905.1| electron transport complex protein rnfC [Pseudomonas stutzeri
           A1501]
          Length = 827

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R  ++  ++ +G+ G GGAGF T +K +  P   + R   L++N  E EP    D  +MR
Sbjct: 126 RPALLELIRQAGISGLGGAGFPTAVKLTPPP---TQRIRTLIINGTECEPYITADDLLMR 182

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
            +   L+ G  I +  +      I +         +++AA+ E
Sbjct: 183 EKAAELVAGIEILAHLVQPQDVLIGIEDNKPEAIAAVRAAIGE 225


>gi|219681490|ref|YP_002467875.1| membrane protein [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471170|ref|ZP_05635169.1| membrane protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219624333|gb|ACL30488.1| membrane protein [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 473

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  +  SG+ G GG  F +  K  F      +R H L+VNA ESEP    D  ++ +  
Sbjct: 95  LIKIIHQSGVVGLGGGQFPSSKKIIF----SMNRAHTLIVNAVESEPYITSDNCLIYNHI 150

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++ GC I  +        I ++ + I+    +Q  +            +K  + + II
Sbjct: 151 SEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQHLIK-----------NKSLFKICII 199

Query: 163 VHHGAGAYICGEETALLESLEGK 185
                  Y  G    L++SL GK
Sbjct: 200 ----KKKYPAGSSKVLVKSLTGK 218


>gi|169824043|ref|YP_001691654.1| electron transport complex protein [Finegoldia magna ATCC 29328]
 gi|167830848|dbj|BAG07764.1| electron transport complex protein [Finegoldia magna ATCC 29328]
          Length = 442

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 19/167 (11%)

Query: 21  SDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           SD ++  G+ +  D   +  ++ I+  +K +G+ G GGAGF T +K +  P V   +   
Sbjct: 103 SDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDV---KIEQ 159

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +++N  E EP    D+  M   P   I G  I    +     +I V        ++ Q A
Sbjct: 160 VILNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGV-------EDNKQKA 212

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           +      G+L + +K   ++ I        Y  G+E  L+ ++ GKK
Sbjct: 213 I------GILKNAAKDEKNISIC--SVKTKYPQGDERRLINAITGKK 251


>gi|153215071|ref|ZP_01949788.1| RnfC-related protein [Vibrio cholerae 1587]
 gi|124114934|gb|EAY33754.1| RnfC-related protein [Vibrio cholerae 1587]
          Length = 505

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 190 YAHEIIQGVEIVEHILKPKLTII 212


>gi|303235326|ref|ZP_07321944.1| putative electron transport complex protein RnfC [Finegoldia magna
           BVS033A4]
 gi|302493640|gb|EFL53428.1| putative electron transport complex protein RnfC [Finegoldia magna
           BVS033A4]
          Length = 442

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 19/167 (11%)

Query: 21  SDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           SD ++  G+ +  D   +  ++ I+  +K +G+ G GGAGF T +K +  P V   +   
Sbjct: 103 SDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHLKMNKKPDV---KIEQ 159

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +++N  E EP    D+  M   P   I G  I    +     +I V        ++ Q A
Sbjct: 160 VILNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGV-------EDNKQKA 212

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           +      G+L + +K   ++ I        Y  G+E  L+ ++ GKK
Sbjct: 213 I------GILKNAAKDEKNISIC--SVKTKYPQGDERRLINAITGKK 251


>gi|197303563|ref|ZP_03168602.1| hypothetical protein RUMLAC_02285 [Ruminococcus lactaris ATCC
           29176]
 gi|197297561|gb|EDY32122.1| hypothetical protein RUMLAC_02285 [Ruminococcus lactaris ATCC
           29176]
          Length = 439

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 17/124 (13%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
              +  V  + E  R+ II+++  +G+ G GGAGF T +K S  PK  +D+  Y++ N  
Sbjct: 107 EAEYAPVKPLNEMTREEIISKIGDAGIVGMGGAGFPTRVKLS--PKD-ADKIEYIIANCA 163

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGC-VIASFAIGAHCAFIYVRGEFIRER------ESLQA 138
           E EP    D   M      L+ G  VI S        F   RG F  E       + LQ 
Sbjct: 164 ECEPYITADYRRMLEYTEDLVSGMRVILSL-------FPNARGIFAVEDNKKDCIQKLQD 216

Query: 139 AVDE 142
           AV E
Sbjct: 217 AVSE 220


>gi|331085097|ref|ZP_08334183.1| hypothetical protein HMPREF0987_00486 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407880|gb|EGG87370.1| hypothetical protein HMPREF0987_00486 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           +      W  V  + +  ++ I+N +  +G+ G GGAGF T +K S  PK   ++  Y++
Sbjct: 103 EQYEEAKWREVIPLEQMKKEEILNCIAEAGIVGMGGAGFPTRVKLS--PKE-PEKIEYII 159

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEG 108
            N  E EP    D   M   P  L+ G
Sbjct: 160 ANCAECEPYITADYRRMLETPEKLVGG 186


>gi|332534028|ref|ZP_08409877.1| electron transport complex protein RnfC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036465|gb|EGI72933.1| electron transport complex protein RnfC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 606

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   D +IN +  +G+ G GGAGF T +K      +      +L+VNA E EP    D  
Sbjct: 130 ELSHDELINIIHQAGISGMGGAGFPTYVKADTKQPI-----EFLIVNAVECEPYITADDV 184

Query: 97  IMRHEPHTLIEGCVI 111
           +MR     +I+G  I
Sbjct: 185 LMREHAKEVIQGIEI 199


>gi|325661148|ref|ZP_08149775.1| hypothetical protein HMPREF0490_00508 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472655|gb|EGC75866.1| hypothetical protein HMPREF0490_00508 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 438

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           +      W  V  + +  ++ I+N +  +G+ G GGAGF T +K S  PK   ++  Y++
Sbjct: 103 EQYEEAKWREVIPLEQMKKEEILNCIAEAGIVGMGGAGFPTRVKLS--PKE-PEKIEYII 159

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEG 108
            N  E EP    D   M   P  L+ G
Sbjct: 160 ANCAECEPYITADYRRMLETPEKLVGG 186


>gi|257456519|ref|ZP_05621715.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           vincentii ATCC 35580]
 gi|257446179|gb|EEV21226.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           vincentii ATCC 35580]
          Length = 424

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++  +  ++ +G+ G GGA F   +K S  PK    +  Y++ NA E EP  C D   M 
Sbjct: 86  KEDALKRIREAGITGMGGASFPVHVKLS-PPK--DAKIDYILGNAAECEPYLCTDAATMY 142

Query: 100 HEPHTLIEGCVIASFAIGA 118
           H   T+I+G  I     GA
Sbjct: 143 HSAETIIDGMAIIMHVTGA 161


>gi|121996875|ref|YP_001001662.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588280|gb|ABM60860.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 448

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G+GGA F T +K++       D    LVVN  E EP    D  +M  
Sbjct: 129 EELVEAIRDAGIVGQGGASFPTHLKFAVPEGYTVD---TLVVNGCECEPFLSADHRLMVE 185

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYV 125
              ++I+G  +A  A+GA  A I V
Sbjct: 186 ATDSIIDGVRLAMRAVGAPEAVIGV 210


>gi|325478991|gb|EGC82092.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 441

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 101/250 (40%), Gaps = 42/250 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I+ ++K +G+ G GGA F   +K+     V       +++N  E EP    D  +M++
Sbjct: 123 EEIVAKIKEAGIVGMGGAAFPAHIKYQPTKPV-----DTVIINGAECEPYITCDDYLMKN 177

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            P  +++  V A  A+ A    + +     +  +S+ AA+++     +   NS L    D
Sbjct: 178 RPERILKALVQAMKAVDAKKGIVAIEDNKPKAYDSMIAALEK-----IAKENSNL----D 228

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVP 218
           I +      Y  G+E  +++         R  P    P +VG       V+NV ++  + 
Sbjct: 229 IEIKKLVTKYPQGDEKRIIDVCLN-----RQVPSGGLPMDVG-----AIVSNVSTMNAIY 278

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             L      Y           ++ +++G  V  P  +       F+     HC    GG 
Sbjct: 279 EALYMDKPLYE----------RIVTVTGKAVKSPTNMIVRCGTEFN-----HCIEQAGGA 323

Query: 278 DNLLAVIPGG 287
           D++  ++ GG
Sbjct: 324 DDIAKLVNGG 333


>gi|332653503|ref|ZP_08419248.1| electron transport complex, RnfABCDGE type, C subunit
           [Ruminococcaceae bacterium D16]
 gi|332518649|gb|EGJ48252.1| electron transport complex, RnfABCDGE type, C subunit
           [Ruminococcaceae bacterium D16]
          Length = 445

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 86/230 (37%), Gaps = 39/230 (16%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
           + V+ASGL G GGAGF T +K +  PK   D    L++N  E EP    D      + H 
Sbjct: 134 DAVRASGLVGLGGAGFPTAVKLA--PKNL-DEIDTLLINGAECEPYITSDNRCFIEDTHF 190

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164
           ++ G       +      I +          ++AA+D                   I V 
Sbjct: 191 ILSGIKAVMKYLNIPKCIIGIEANKPEAIAKMKAAIDV----------------AGIEVK 234

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
                Y  G E  L+E+  G++      P  P++VG+      V NV S A V   L  G
Sbjct: 235 ELPCRYPQGAEKVLIENCTGREVP---FPGLPSDVGVI-----VMNVTSTAFVGKYLETG 286

Query: 225 ASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGI 273
                         TK  ++ G  V  P  VE  +     EL +  CGG+
Sbjct: 287 MPLT----------TKRLTVDGDIVKEPKNVEVIIGTPIQELFD-FCGGL 325


>gi|308049948|ref|YP_003913514.1| electron transport complex, RnfABCDGE type, C subunit [Ferrimonas
           balearica DSM 9799]
 gi|307632138|gb|ADN76440.1| electron transport complex, RnfABCDGE type, C subunit [Ferrimonas
           balearica DSM 9799]
          Length = 895

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPGTCKDRDIM 98
           RD I+  ++ +G+ G GGA F   +K S      +D+P  +L++N  E EP    D  +M
Sbjct: 133 RDAILGRIRDAGIAGLGGATFPAAIKLS------TDKPVQFLIINGAECEPYITSDDRLM 186

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYV 125
           + E   ++ G  I    I      I +
Sbjct: 187 QDEAEAILSGIDILDHLIQPERILIAI 213


>gi|291514609|emb|CBK63819.1| electron transport complex, RnfABCDGE type, C subunit [Alistipes
           shahii WAL 8301]
          Length = 443

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 24/193 (12%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D + K+       II ++K +G+ G GGA F T +K S  P     +   +++N  E EP
Sbjct: 107 DALVKVCPFSAQEIIAKIKDAGIVGMGGATFPTHVKLSVPP---GKKAECVIINGVECEP 163

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D   M      L+ G  I   A+G   A+I +          L        A+G  
Sbjct: 164 YLTSDHRTMLEHGEELVVGVTILMKAVGVGKAYIGIENNKPDAIAHLTK-----IAAGYK 218

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
           G          I V      Y  G E  L+ ++ G++  P   P  P +VG   C    N
Sbjct: 219 G----------IEVVPLKVMYPQGGEKQLIAAVTGRQVPP--PPALPIDVGAVVC----N 262

Query: 210 NVESIAVVPTILR 222
              ++AV   +L+
Sbjct: 263 ASTTVAVYQAVLK 275


>gi|51947513|gb|AAU14241.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus
          ovalis]
          Length = 46

 Score = 42.4 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 8  IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLR 53
          IF+NLY  Q   ++ ++ RG W     IL   +D++I+E+K SGLR
Sbjct: 1  IFSNLYKDQDPFINGALKRGDWYRTKDILSCPQDFVIDEIKKSGLR 46


>gi|315186451|gb|EFU20211.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta
           thermophila DSM 6578]
          Length = 444

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II  +K +G+ G GGAGF T +K S  P    D    L++N  E EP    D  +M  + 
Sbjct: 127 IIERIKEAGIVGMGGAGFPTHVKLSIPPGKEID---TLIINGVECEPYLTADHRLMLEKT 183

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             ++ G  +   A+G    FI
Sbjct: 184 DEILVGISLIRKALGGPRVFI 204


>gi|304382697|ref|ZP_07365189.1| Na(+)-translocating NADH-quinone reductase subunit A [Prevotella
           marshii DSM 16973]
 gi|304336148|gb|EFM02392.1| Na(+)-translocating NADH-quinone reductase subunit A [Prevotella
           marshii DSM 16973]
          Length = 452

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 93/243 (38%), Gaps = 37/243 (15%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + II ++K +G+ G GGAGF T +K +  P   + +   +++NA E EP    D  +M  
Sbjct: 128 ESIIEKIKTAGITGMGGAGFPTFIKLTPPP---TAKAECIIINAVECEPYITSDYRLMME 184

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               ++ G  +   A      +I                +++     +     K     D
Sbjct: 185 HADEILVGLELLMKAAKVTKGYI---------------GIEDNKPKAITLFEEKTAGRTD 229

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +   A  Y  G E  L++++  +  Q    P  P NVG       V NV +   V   
Sbjct: 230 IEIVPLAKKYPQGGEKQLVDAVIHR--QVPAPPAIPVNVG-----AVVQNVGTAFAV--- 279

Query: 221 LRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
                  Y    +      +  +++G  + +P      M     +LIE  CGG+  G + 
Sbjct: 280 -------YQAVMKNKPLFERYTTVTGKKLAHPGNFLVRMGTPMKDLIEA-CGGMPKGDNK 331

Query: 280 LLA 282
           LLA
Sbjct: 332 LLA 334


>gi|225175193|ref|ZP_03729189.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169369|gb|EEG78167.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 440

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 102/267 (38%), Gaps = 47/267 (17%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           D      W N+      G D +   ++ +G+ G GGA F T +K S  P     +  Y++
Sbjct: 110 DVKPNDDWKNL------GVDDLKKIIREAGIVGMGGATFPTHVKVSPPP---DQKIDYVL 160

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
           +NA E EP    D   M   P  ++ G       + A   +I +        E+++ A +
Sbjct: 161 INAAECEPYLTSDHRAMLERPEDVVIGLQTVMKVVNAPKGYIGIEDNKPDAVEAMKKAAE 220

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
                         G D +I VH     Y  G E  L+    G++       P      +
Sbjct: 221 --------------GID-NIEVHALHTKYPQGAEKQLISVFTGREV------PSGGLPSM 259

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSI 260
            GC   V NV +   +   +R G         E N      +I+G  +N P  +   +  
Sbjct: 260 VGC--VVQNVGTCIAISEAIRLGKPLI-----ERN-----VTITGSGINEPKNMLVRVGT 307

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGG 287
             +E+IE+ CGG +    N+  +I GG
Sbjct: 308 PMEEVIEQ-CGGFK---PNIRKMILGG 330


>gi|326202709|ref|ZP_08192577.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           [Clostridium papyrosolvens DSM 2782]
 gi|325987293|gb|EGD48121.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           [Clostridium papyrosolvens DSM 2782]
          Length = 414

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/80 (23%), Positives = 43/80 (53%)

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G   + + D+S  +I    +  +  + +SCG+CT CREG   +   +  + KG  +   
Sbjct: 222 MGDGVITIYDKSCCMIAQAEKALLESRKKSCGKCTFCREGLNQLFVRINEITKGKGESNG 281

Query: 375 IDLLYEVSKNIEGRTICALG 394
           + ++ ++ + ++  TIC++G
Sbjct: 282 LRIMEDIGEAMKFSTICSIG 301


>gi|253997322|ref|YP_003049386.1| RnfABCDGE type electron transport complex subunit C [Methylotenera
           mobilis JLW8]
 gi|253984001|gb|ACT48859.1| electron transport complex, RnfABCDGE type, C subunit
           [Methylotenera mobilis JLW8]
          Length = 637

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           GK L   ++   W +         + +I  ++ SG+ G GGA F T +K     K  +  
Sbjct: 125 GKDLWKPLTPIDWKHT------AHNELITSLRTSGIVGLGGATFPTHIKLR---KDGASA 175

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            H L++NA E EP    D  +MR     +I+G  IA   + A    I
Sbjct: 176 IHTLIINAAECEPYITCDDMLMRERADEIIQGIAIAQHLLRATAVVI 222


>gi|166031924|ref|ZP_02234753.1| hypothetical protein DORFOR_01625 [Dorea formicigenerans ATCC
           27755]
 gi|166028377|gb|EDR47134.1| hypothetical protein DORFOR_01625 [Dorea formicigenerans ATCC
           27755]
          Length = 439

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +     + E  ++ I+N +  +G+ G GGAGF T +K S  PK   D+  Y++ N  E 
Sbjct: 109 EYSTPKAVSEMSKEEILNAIGDAGIVGMGGAGFPTKVKLS--PKE-PDKIDYIIANCAEC 165

Query: 88  EPGTCKD-RDIMRHEPHTLIEGCVI 111
           EP    D R I+ H    L+EG  I
Sbjct: 166 EPYITADYRQILEHG-EELVEGMKI 189


>gi|255524147|ref|ZP_05391107.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
 gi|296186604|ref|ZP_06855006.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
 gi|255512132|gb|EET88412.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
 gi|296048641|gb|EFG88073.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
          Length = 441

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  W+ +DK        ++N +K +G+ G GGA F T +K S  P    D     ++N
Sbjct: 112 VERNDWEKLDK------KELLNIIKEAGIVGMGGATFPTHVKLSPPPDKKVDT---FILN 162

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           A E EP    D  +M  +   ++ G  I    +G    ++
Sbjct: 163 AAECEPYLTADHRMMLEQSERIVNGVKITMKVLGIDKGYV 202


>gi|332525143|ref|ZP_08401320.1| electron transport complex, RnfABCDGE type, C subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332108429|gb|EGJ09653.1| electron transport complex, RnfABCDGE type, C subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 462

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           W     I     D I+  V  +GL G GGA F T  K    P+    + H LV+N  E E
Sbjct: 116 WGVARDIDAMTPDEILQAVWDAGLVGLGGAAFPTHAKLKVPPQA---KVHTLVINGCECE 172

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           P    D   M  E   L+ G  ++  A GA  A +
Sbjct: 173 PYLTCDHRTMVEESAALVRGIALSMRATGAVRAIV 207


>gi|71907126|ref|YP_284713.1| electron transport complex, RnfABCDGE type, C subunit
           [Dechloromonas aromatica RCB]
 gi|71846747|gb|AAZ46243.1| Electron transport complex, RnfABCDGE type, C subunit
           [Dechloromonas aromatica RCB]
          Length = 503

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I     A+G+ G GGA F    K++   ++   +   L+VN  E EP    D  IMR 
Sbjct: 129 EEITKRTAAAGVVGLGGATFPAAPKFALGKRL---KVSTLIVNGGECEPYLSSDDRIMRD 185

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
            P  +++G  +   AIGA  A +
Sbjct: 186 YPEMVVDGARLVMHAIGASEALV 208


>gi|15616735|ref|NP_239947.1| membrane protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219682046|ref|YP_002468430.1| membrane protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|17368120|sp|P57215|RNFC_BUCAI RecName: Full=Electron transport complex protein rnfC
 gi|25403549|pir||A84943 membrane protein [imported] - Buchnera sp. (strain APS)
 gi|10038798|dbj|BAB12833.1| membrane protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219621779|gb|ACL29935.1| membrane protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|311085858|gb|ADP65940.1| membrane protein [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311087011|gb|ADP67091.1| membrane protein [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087582|gb|ADP67661.1| membrane protein [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 473

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  +  SG+ G GG  F +  K  F      +R H L+VNA ESEP    D  ++ +  
Sbjct: 95  LIKIIHQSGVVGLGGGQFPSSKKIIF----SINRAHTLIVNAVESEPYITSDNCLIYNHI 150

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++ GC I  +        I ++ + I+    +Q  +            +K  + + II
Sbjct: 151 SEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQHLIK-----------NKSLFKICII 199

Query: 163 VHHGAGAYICGEETALLESLEGK 185
                  Y  G    L++SL GK
Sbjct: 200 ----KKKYPAGSSKVLVKSLTGK 218


>gi|315281896|ref|ZP_07870421.1| PduS type ferredoxin, putative [Listeria marthii FSL S4-120]
 gi|313614458|gb|EFR88077.1| PduS type ferredoxin, putative [Listeria marthii FSL S4-120]
          Length = 369

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 127/318 (39%), Gaps = 63/318 (19%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 7   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 59

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L+AA+ E               D  + 
Sbjct: 60  VETIKAIEMVKSQVGAEFAVIATKRYYTAEIAALRAAISE--------------LDASVT 105

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 106 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 149

Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
                 W      +++     K  +++G V  P  ++  +   F+      C    GG  
Sbjct: 150 ------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGG-T 197

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL-- 336
           NL   +        L  G M G + D   + E      T+ +IV + +  + K  ++   
Sbjct: 198 NLAEYL-------FLDGGPMMGKLNDQSTISEKVVTKTTSGLIVAEDTGYLHKLHYQTVE 250

Query: 337 SVFYKHES-CGQCTPCRE 353
            +F + +S C QC+ C +
Sbjct: 251 QIFNETKSACIQCSLCSD 268


>gi|188590725|ref|YP_001921031.1| putative glutamate synthase (NADPH) small subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188501006|gb|ACD54142.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 611

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAW 399
           + ++CG+C PCR G   +  +++ ++   A    IDL+ + +K +     CA+G +AA  
Sbjct: 48  QAQTCGKCVPCRIGLAQLENLIDDVLNRKATLETIDLIEKTAKVVIDSADCAIGYEAANM 107

Query: 400 PIQGLIKNFRPLIEERIDQYHRCNFQ 425
            ++G++      IE  ++    CN  
Sbjct: 108 VLKGIVGFKSDYIEHIVNNRCICNLN 133


>gi|42526350|ref|NP_971448.1| Na(+)-translocating NADH-quinone reductase, A subunit [Treponema
           denticola ATCC 35405]
 gi|41816462|gb|AAS11329.1| Na(+)-translocating NADH-quinone reductase, A subunit [Treponema
           denticola ATCC 35405]
          Length = 480

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++  +  V+ +G+ G GGA F T +K S  P     +  Y++ N  E EP  C D   + 
Sbjct: 120 KEEALKRVRDAGITGMGGASFPTHVKLSPPPDA---KIEYVIANGAECEPYLCTDAATIF 176

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            +  ++++G  I    +GA    I +          L+ A+ +  A+ +        YD+
Sbjct: 177 SDSDSIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISKIKANPIAAG----AYDI 232

Query: 160 DI 161
            +
Sbjct: 233 SV 234


>gi|225026272|ref|ZP_03715464.1| hypothetical protein EUBHAL_00513 [Eubacterium hallii DSM 3353]
 gi|224956380|gb|EEG37589.1| hypothetical protein EUBHAL_00513 [Eubacterium hallii DSM 3353]
          Length = 442

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 44/227 (19%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ +  SG+ G GGAGF T +K +        +  Y+++N  E EP    D+ +M  E 
Sbjct: 5   LIDIIAKSGIVGAGGAGFPTHVKMN-------AKAEYVIINGAECEPLLRVDQQLMAVET 57

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +++   +   A+GA    I ++G +       +AA++          N  LG    I 
Sbjct: 58  KKILDALKLCMEAVGADKGVIALKGHY-------EAAINS--------FNQLLGEYEGIS 102

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E   +  + G     R+ P    P   G+      V+NVE++      
Sbjct: 103 LHLLPNFYPAGDEQITVYEVTG-----RIVPEGGIPLQCGV-----IVSNVETM------ 146

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
                + Y+ +  +        + +G V    T++  + +T  E ++
Sbjct: 147 ----LNIYNAYFEDKPVTDSYVTFAGEVKNHITLKLPLGMTVKEALD 189


>gi|291561267|emb|CBL40066.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductases [butyrate-producing bacterium SS3/4]
          Length = 610

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR G G + +++  ++ G A    +DL+ + + +I     CA+G +AA    
Sbjct: 50  QTCGKCVPCRIGLGQLNQLIRDVLNGKATMDTLDLMEKTALSIMDSADCAIGYEAANMVY 109

Query: 402 QGLI 405
           +GLI
Sbjct: 110 KGLI 113


>gi|325473292|gb|EGC76487.1| hypothetical protein HMPREF9353_02282 [Treponema denticola F0402]
          Length = 438

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 7/122 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++  +  V+ +G+ G GGA F T +K S  P     +  Y++ N  E EP  C D   + 
Sbjct: 78  KEEALKRVRDAGITGMGGASFPTHVKLSPPPDA---KIEYVIANGAECEPYLCTDAATIF 134

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            +  ++++G  I    +GA    I +          L+ A+ +  A+ +        YD+
Sbjct: 135 SDSDSIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISKIKANPIAAG----AYDI 190

Query: 160 DI 161
            +
Sbjct: 191 SV 192


>gi|311086429|gb|ADP66510.1| membrane protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 451

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  +  SG+ G GG  F +  K  F      +R H L+VNA ESEP    D  ++ +  
Sbjct: 95  LIKIIHQSGVVGLGGGQFPSSKKIIF----SINRAHTLIVNAVESEPYITSDNCLIYNHI 150

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++ GC I  +        I ++ + I+    +Q  +            +K  + + II
Sbjct: 151 SEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQHLIK-----------NKSLFKICII 199

Query: 163 VHHGAGAYICGEETALLESLEGK 185
                  Y  G    L++SL GK
Sbjct: 200 ----KKKYPAGSSKVLVKSLTGK 218


>gi|154497075|ref|ZP_02035771.1| hypothetical protein BACCAP_01368 [Bacteroides capillosus ATCC
           29799]
 gi|150273474|gb|EDN00602.1| hypothetical protein BACCAP_01368 [Bacteroides capillosus ATCC
           29799]
          Length = 454

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           WD ++         +++ V+ SGL G GGAGF T +K +       DR   LV+N  E E
Sbjct: 129 WDGIEVPKVTNMQELLDAVRKSGLVGLGGAGFPTWVKLN----ATVDR---LVINGSECE 181

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           P    D   MR     + EG  I    +G   A + V+
Sbjct: 182 PYCTVDYIAMRDYAADMAEGVRIVKTLLGIEKAIVGVK 219


>gi|312883749|ref|ZP_07743469.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368599|gb|EFP96131.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 645

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 39/193 (20%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK-WSFMPKVCSDRPHYLVVNADES 87
           W N     E+  + II +++  G+ G GGAGF T  K  S + K        L++NA E 
Sbjct: 125 WPN---FAERSPEEIIEKIRMLGISGMGGAGFPTAKKVQSGLAKT-----EVLIINAAEC 176

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR     LI+G  I    +      I +         +L+ A +      
Sbjct: 177 EPYITADDMLMRTYADELIKGIEIVEHILKPKLTVIGIEDNKPEAIRALEIAAE------ 230

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGC 204
                     D DII+      Y  G E  L++ L        L+ P    PA++G+   
Sbjct: 231 ----------DKDIIIRVIPTKYPSGGEKQLIKILTN------LEVPSNGIPADIGIL-- 272

Query: 205 PTTVNNVESIAVV 217
              V NV S+  +
Sbjct: 273 ---VQNVGSLYAI 282


>gi|266624041|ref|ZP_06116976.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium
           hathewayi DSM 13479]
 gi|288864137|gb|EFC96435.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium
           hathewayi DSM 13479]
          Length = 211

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I N VK +G+ G GGAGF T +K +   +   D    ++VN  E EP    D  +M 
Sbjct: 122 KEEIRNIVKEAGIVGLGGAGFPTHVKLTPKDESAIDT---IIVNGAECEPYLTSDYRMML 178

Query: 100 HEPHTLIEGC-VIASF 114
            EP ++++G  VI S 
Sbjct: 179 EEPESIVKGLNVILSL 194


>gi|313633764|gb|EFS00506.1| PduS type ferredoxin, putative [Listeria seeligeri FSL N1-067]
          Length = 455

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 127/318 (39%), Gaps = 63/318 (19%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 7   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 59

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A +  +  +  E  +L+AA+ E               D  + 
Sbjct: 60  VETIKAIEMVKSQVGAEFAVVATKRYYTEEIAALRAAIQE--------------LDSSVT 105

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 106 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 149

Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
                 W      +++     K  +++G V  P  ++  +   F+      C    GG  
Sbjct: 150 ------WNVFHAIDDDAPVIRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGT- 197

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL-- 336
           NL       S    L  G M G + +   + E      T+ +IV + +  + K  ++   
Sbjct: 198 NL-------SEYLFLDGGPMMGKLNNQSTISEKVVTKTTSGLIVTEDTGYLHKLHYQTVE 250

Query: 337 SVFYKHES-CGQCTPCRE 353
            +F + +S C QCT C +
Sbjct: 251 QIFNETKSACIQCTLCTD 268


>gi|167771614|ref|ZP_02443667.1| hypothetical protein ANACOL_02986 [Anaerotruncus colihominis DSM
           17241]
 gi|167666254|gb|EDS10384.1| hypothetical protein ANACOL_02986 [Anaerotruncus colihominis DSM
           17241]
          Length = 437

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +NV   +       +  +K SGL G GGAGF T +K +  PK  S+    LVVNA E EP
Sbjct: 109 ENVKPPVISNHPEFVQAIKESGLVGLGGAGFPTHIKLN--PKNLSEV-DTLVVNAAECEP 165

Query: 90  GTCKDRDIMRHEPHTLIEG 108
               D   +   P  +++G
Sbjct: 166 YITSDYRTIIERPQDVLDG 184


>gi|291279992|ref|YP_003496827.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Deferribacter desulfuricans SSM1]
 gi|290754694|dbj|BAI81071.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Deferribacter desulfuricans SSM1]
          Length = 651

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 321 IVMDRSTDIIKAIWR-LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +V D+  +I+  +   +     +  CG+C P R GT  +   ++++     +K +I+L Y
Sbjct: 50  LVFDKDVNILDVLTEYMFEISSYGCCGRCFPGRMGTRILAEQLQKIKNDGFKKEDIELAY 109

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +++ +I     C +   +  P++  +KNF
Sbjct: 110 DIAYSIYVSAKCTVAPTSTVPVRQFLKNF 138


>gi|150007170|ref|YP_001301913.1| electron transport complex protein RnfC [Parabacteroides distasonis
           ATCC 8503]
 gi|255015216|ref|ZP_05287342.1| electron transport complex, protein RnfC [Bacteroides sp. 2_1_7]
 gi|298377595|ref|ZP_06987547.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           sp. 3_1_19]
 gi|149935594|gb|ABR42291.1| electron transport complex, protein RnfC [Parabacteroides
           distasonis ATCC 8503]
 gi|298265614|gb|EFI07275.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           sp. 3_1_19]
          Length = 443

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++++ ASG+ G GGA F T +K    P    ++   +++NA E EP    D  +M  + 
Sbjct: 126 IVDKIAASGIVGLGGATFPTQVKLMPPP---GNKAEIVIINAVECEPYLTSDHSLMLEKG 182

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             ++ G  I   A+  + A I
Sbjct: 183 EQILVGVTILMKAVNVNKAVI 203


>gi|217967478|ref|YP_002352984.1| electron transport complex, RnfABCDGE type, C subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217336577|gb|ACK42370.1| electron transport complex, RnfABCDGE type, C subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 437

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           +W N+        + I + ++ +G+ G GGA F T +K S  P+   D    +++N  E 
Sbjct: 116 NWQNLSP------EEIKSRIREAGIVGLGGAAFPTHVKISPPPEKKIDT---VILNGAEC 166

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
           EP    D  +M  +P  +IEG  I  + +G     I +        E L+   D
Sbjct: 167 EPYLTIDYRLMLEKPELIIEGLHILMYVLGVKRGIIGIEDNKKDAVEVLKKYAD 220


>gi|160935623|ref|ZP_02082998.1| hypothetical protein CLOBOL_00513 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441367|gb|EDP19077.1| hypothetical protein CLOBOL_00513 [Clostridium bolteae ATCC
           BAA-613]
          Length = 441

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I N VK +G+ G GGAGF T +K +  PK   +   Y++VN  E EP    D  +M 
Sbjct: 122 KEEIRNIVKEAGIVGLGGAGFPTHVKLT--PKD-ENAIEYILVNGAECEPYLTSDYRMML 178

Query: 100 HEPHTLIEG 108
            EP  ++ G
Sbjct: 179 EEPEKIVGG 187


>gi|297587688|ref|ZP_06946332.1| Na(+)-translocating NADH-quinone reductase subunit A [Finegoldia
           magna ATCC 53516]
 gi|297574377|gb|EFH93097.1| Na(+)-translocating NADH-quinone reductase subunit A [Finegoldia
           magna ATCC 53516]
          Length = 442

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 19/167 (11%)

Query: 21  SDSMSR-GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           SD ++  G+ +  D   +  ++ I+  +K +G+ G GGAGF T +K    P V   +   
Sbjct: 103 SDGLNELGYTETNDDFTQLSKEVILERIKEAGIVGLGGAGFPTHIKMKKKPDV---KIEE 159

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +++N  E EP    D+  M   P   I G  I    +     +I V        ++ Q A
Sbjct: 160 VILNGAECEPYLTSDQLNMELYPQKAIGGLKIIMKLMDCDKGYIGV-------EDNKQKA 212

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           +      G+L + +K   + +I +      Y  G+E  L+ ++ GKK
Sbjct: 213 I------GILKNAAK--DETNISICAVKTKYPQGDERRLINAITGKK 251


>gi|170288502|ref|YP_001738740.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           sp. RQ2]
 gi|170176005|gb|ACB09057.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           sp. RQ2]
          Length = 435

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 21/198 (10%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I+  +K +G+ G GGA F T +K S  P+   D    L+VN  E EP    D  +M 
Sbjct: 119 KEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVDT---LIVNGAECEPVLTIDHRLML 175

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                +++G +I    +G   A + V    +    +L+                  GY V
Sbjct: 176 ERAEDILQGILIMMKVLGVQEAVVGVESNKMDAYHNLKKVFK--------------GYPV 221

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D+ +      Y  G E  L+ ++ G+   PR   P    V +    T V   E++     
Sbjct: 222 DVALLK--TKYPQGAEKQLIYAITGRV-VPRGGLPMDVGVVVQNVGTCVAVKEAVVDGKP 278

Query: 220 ILRRGASWYSGFGRENNR 237
           ++ RG +  SG   +N +
Sbjct: 279 LVERGMT-VSGDAVKNPK 295


>gi|225376079|ref|ZP_03753300.1| hypothetical protein ROSEINA2194_01716 [Roseburia inulinivorans DSM
           16841]
 gi|83596379|gb|ABC25536.1| PduS [Roseburia inulinivorans DSM 16841]
 gi|225212099|gb|EEG94453.1| hypothetical protein ROSEINA2194_01716 [Roseburia inulinivorans DSM
           16841]
          Length = 441

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 114/323 (35%), Gaps = 63/323 (19%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D + N  + +G+ G GGAGF    K +       ++   +++N  E EP     R ++  
Sbjct: 4   DELKNIARNNGIVGAGGAGFPAYAKMT-------EKADTVILNCVECEPLLKLHRQLLAT 56

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               +I+       + GA  A I ++ E++   ++++  +               G   +
Sbjct: 57  HTEEIIQMLDEVRESFGAKEAVIGIKSEYVTTIKAIEEVI---------------GDFPN 101

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKP---PFPANVGLYGCPTTVNNVESIAVV 217
           + +     AY  G+E  L+    G+     +KP   P   NV +Y   T  N        
Sbjct: 102 VRICALKAAYPMGDEVVLIYEATGRV----IKPGGLPIDENVVVYNVETMYN-------- 149

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
                     Y           KL SI G +++P TV   +  T  E I           
Sbjct: 150 ---------LYRAVHLNIPVTNKLVSIVGEIDHPLTVRVPLGTTVKEAIS---------- 190

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                 + G  +V   PA  M G +M   G +       T A+I++ +   ++  + +  
Sbjct: 191 ------LAGKITVED-PAYVMGGPMMGRLGTENTVITKTTNAIIILPKDHHVVVRMEKNL 243

Query: 338 VFYKHESCGQCTPCREGTGWMMR 360
              K  +   C  CR  T    R
Sbjct: 244 DIEKRRASSSCCQCRTCTDMCSR 266


>gi|148269816|ref|YP_001244276.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           petrophila RKU-1]
 gi|147735360|gb|ABQ46700.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           petrophila RKU-1]
          Length = 435

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 21/198 (10%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I+  +K +G+ G GGA F T +K S  P+   D    L++N  E EP    D  +M 
Sbjct: 119 KEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVDT---LIINGAECEPVLTIDHRLML 175

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                +++G +I    +G   A + V    +    +L+                  GY V
Sbjct: 176 ERAEDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLKKVFK--------------GYPV 221

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D+ +      Y  G E  L+ ++ G+   PR   P    V +    T V   E++     
Sbjct: 222 DVALLK--TKYPQGAEKQLIYAITGRV-VPRGGLPMDVGVVVQNVGTCVAVKEAVVDGKP 278

Query: 220 ILRRGASWYSGFGRENNR 237
           ++ RG +  SG   +N +
Sbjct: 279 LVERGMT-VSGDAVKNPK 295


>gi|160878369|ref|YP_001557337.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           phytofermentans ISDg]
 gi|160427035|gb|ABX40598.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           phytofermentans ISDg]
          Length = 439

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I + +K +G+ G GGAGF T +K +       D   YL++N  E EP    D  +M 
Sbjct: 122 KEQIRSIIKEAGIVGMGGAGFPTHIKLTPKDDSAID---YLIINGSECEPYLTSDYRMML 178

Query: 100 HEPHTLIEGCVIA 112
            E + LI+G  I 
Sbjct: 179 EETNRLIKGIKIT 191


>gi|256840545|ref|ZP_05546053.1| electron transport complex [Parabacteroides sp. D13]
 gi|256737817|gb|EEU51143.1| electron transport complex [Parabacteroides sp. D13]
          Length = 443

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++++ ASG+ G GGA F T +K    P    ++   +++NA E EP    D  +M  + 
Sbjct: 126 IVDKIAASGIVGLGGATFPTQVKLMPPP---GNKAEIVIINAVECEPYLTSDHSLMLEKG 182

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             ++ G  I   A+  + A I
Sbjct: 183 EQILVGVTILMKAVNVNKAVI 203


>gi|146306434|ref|YP_001186899.1| electron transport complex protein RnfC [Pseudomonas mendocina ymp]
 gi|145574635|gb|ABP84167.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas
           mendocina ymp]
          Length = 944

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           ++ +G+ G GGAGF T +K +  P   + + H L++N  E EP    D  +MR     L+
Sbjct: 134 IREAGISGLGGAGFPTAVKLTARP---TQKIHTLIINGTECEPYITADDLLMRERAGELV 190

Query: 107 EGCVI 111
            G  I
Sbjct: 191 SGIDI 195


>gi|262381166|ref|ZP_06074304.1| electron transport complex protein [Bacteroides sp. 2_1_33B]
 gi|301311165|ref|ZP_07217093.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           sp. 20_3]
 gi|262296343|gb|EEY84273.1| electron transport complex protein [Bacteroides sp. 2_1_33B]
 gi|300830739|gb|EFK61381.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           sp. 20_3]
          Length = 443

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++++ ASG+ G GGA F T +K    P    ++   +++NA E EP    D  +M  + 
Sbjct: 126 IVDKIAASGIVGLGGATFPTQVKLMPPP---GNKAEIVIINAVECEPYLTSDHSLMLEKG 182

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             ++ G  I   A+  + A I
Sbjct: 183 EQILVGVTILMKAVNVNKAVI 203


>gi|325280076|ref|YP_004252618.1| electron transport complex, RnfABCDGE type, C subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324311885|gb|ADY32438.1| electron transport complex, RnfABCDGE type, C subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 443

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I+  + A+G+ G GGA F T +K +  P    ++   L++N  E EP    D  IM 
Sbjct: 123 KEEIVKAIAAAGIVGMGGATFPTQVKLTPPP---GNKAEVLIINGVECEPYLTADHRIML 179

Query: 100 HEPHTLIEGCVIASFAIGAHCAFI 123
            +   +I G  I   AI    A I
Sbjct: 180 EKAEEIIIGVQILMKAIDVKRAII 203


>gi|153855000|ref|ZP_01996213.1| hypothetical protein DORLON_02219 [Dorea longicatena DSM 13814]
 gi|149752497|gb|EDM62428.1| hypothetical protein DORLON_02219 [Dorea longicatena DSM 13814]
          Length = 610

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR G G +   +  ++ G A  + +D++ + + +I     CA+G +AA    
Sbjct: 50  QTCGKCVPCRIGLGQLNNFIREVLDGKATMKTLDIMEQTALSIMESADCAIGYEAANMVY 109

Query: 402 QGLI 405
           +GLI
Sbjct: 110 KGLI 113


>gi|33151623|ref|NP_872976.1| electron transport complex protein RnfC [Haemophilus ducreyi
           35000HP]
 gi|71153698|sp|Q7VNT4|RNFC_HAEDU RecName: Full=Electron transport complex protein rnfC
 gi|33147844|gb|AAP95365.1| putative iron-sulfur binding NADH dehydrogenase [Haemophilus
           ducreyi 35000HP]
          Length = 702

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           ++  L    D II +V   G+ G GGA F T  K S   K C      L++N  E EP  
Sbjct: 132 IEDFLTLTSDQIIQKVYQYGIAGLGGAVFPTACKLSLADKRCK----VLIINGAECEPYI 187

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           TC DR +M+     L+EG  I  + +      I +
Sbjct: 188 TCDDR-LMQDFTAELLEGIRILRYVLRPEEVVIAI 221


>gi|291549337|emb|CBL25599.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Ruminococcus torques L2-14]
          Length = 448

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 118/310 (38%), Gaps = 60/310 (19%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           ++ +G+ G GGAGF T  K         +R   +++N  E EP     R ++      +I
Sbjct: 10  LQQNGIVGAGGAGFPTYAKL-------DERAETIILNCAECEPLLRLHRQLLEKYAKEII 62

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
           +   +    +GA    I ++  +    E+++A + + Y    LG   ++           
Sbjct: 63  DTFHMIGETVGAKEVIIGIKKAYTATIEAVKAVMGQ-YPEVRLGLLDEV----------- 110

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
              Y  G+E  L+    GK  +P    P  + V ++       NVE++  V         
Sbjct: 111 ---YPAGDEVVLIYETTGKVVRPG-GLPIESGVAVF-------NVETVYNV--------- 150

Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
            Y     +     KL S+   V +P TV   +    +E++      + GG     AV   
Sbjct: 151 -YRALNEKTPVEDKLVSVVAEVEHPITVRVPIGTPLEEVV-----ALAGGVTTKDAVYFV 204

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII-KAIWRLSVFYKHES- 344
           G        G M G I    G         T A++V+ +   II K + + S+  K  + 
Sbjct: 205 G--------GPMMGNI----GTGAQPVTKTTNAILVLPKDHHIIQKKLKKNSIDMKRAAA 252

Query: 345 -CGQCTPCRE 353
            C QCT C +
Sbjct: 253 CCCQCTMCTD 262


>gi|149190373|ref|ZP_01868645.1| electron transport complex protein RnfC [Vibrio shilonii AK1]
 gi|148835752|gb|EDL52717.1| electron transport complex protein RnfC [Vibrio shilonii AK1]
          Length = 934

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L++  + +I  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D 
Sbjct: 129 LDELPESLIERIRLAGISGMGGAGFPTARKI----QSGLQRTEILILNAAECEPYITADD 184

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDE 142
            +M+ +   +IEG  I +  +      I +   + E I+  E  QAA DE
Sbjct: 185 RLMQDKAQEVIEGIKILNHILKPKLTIIGIEDNKPEAIKALE--QAATDE 232


>gi|182413872|ref|YP_001818938.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177841086|gb|ACB75338.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Opitutus terrae PB90-1]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 102/279 (36%), Gaps = 58/279 (20%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           ++ N  E EP   KD  +M      L+ G  +A  A+GA    + ++    + + + +A 
Sbjct: 33  VIANGAECEPLLHKDAAVMERNARDLVTGLQLAMEAVGATTGIVGLKA---KNQHAQEAV 89

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPA 197
            + C  +              I +H     Y  G+E  L+ +  G     RL PP   P 
Sbjct: 90  TEACRGT-------------TIRIHLLGDYYPAGDEYDLVYTTTG-----RLIPPAGIPL 131

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           NVG       V+NVE++  +           +  GR      K  +I+G V  P T+   
Sbjct: 132 NVG-----AVVSNVETLVNIAA---------AAEGRPVTH--KTLTIAGAVAAPATLTVP 175

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +  T      + C    GG   L  V+       C+    M     D D      +G   
Sbjct: 176 LGTTL-----RACLDAAGGPTVLDPVL-------CIGGMMMGETTTDLDRPVTKTTG--- 220

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYK---HESCGQCTPCRE 353
             VIV+ RS  II+   + +         +C QC  C E
Sbjct: 221 -GVIVLPRSHRIIQRKLKPATLQHAIGKSACDQCRYCTE 258


>gi|304316325|ref|YP_003851470.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777827|gb|ADL68386.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 441

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 38/230 (16%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           V+ +G+ G GGA F T +K +  P    D    +++N  E EP    D  +M  +P  ++
Sbjct: 131 VRDAGIVGMGGAMFPTAVKLNPPPDKKID---IVILNGAECEPYLTADHRLMLEKPVDIV 187

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
            G +    A+GA   ++ +        + ++ A  E YA          G +V ++    
Sbjct: 188 HGLLAIMKALGASKGYVGIEDNKQDAIKEIRKACKE-YA----------GVEVAVL---- 232

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
              Y  G E  +++++ G++  P  K   PA++G+      V+NV +   +   ++ G  
Sbjct: 233 KTKYPQGSEKHIIKAITGRE-IPSGK--LPADIGV-----VVDNVGTAFAIAEAIKFGKP 284

Query: 227 WYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
                        ++ +++G  +  P  +   +   F ELIE  CGG +G
Sbjct: 285 LIE----------RVVTVTGEGIMTPKNLRVKIGTPFRELIE-CCGGFKG 323


>gi|292492763|ref|YP_003528202.1| electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus halophilus Nc4]
 gi|291581358|gb|ADE15815.1| electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus halophilus Nc4]
          Length = 515

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
           N ++ +G+ G GGAGF T +K +  P+    R   L++N  E EP    D  +MR     
Sbjct: 131 NLIRQAGIVGLGGAGFPTFIKLNPGPE---PRVETLILNGAECEPYITCDDLLMRERAEE 187

Query: 105 LIEGCVIASFAIGAHCAFI 123
           +I+G  I   A+  H   I
Sbjct: 188 IIQGIRIMGHALHVHHCLI 206


>gi|156975237|ref|YP_001446144.1| electron transport complex protein RnfC [Vibrio harveyi ATCC
           BAA-1116]
 gi|156526831|gb|ABU71917.1| hypothetical protein VIBHAR_02966 [Vibrio harveyi ATCC BAA-1116]
          Length = 912

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QESADALIDVIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M+     LI+G  I    +      I
Sbjct: 186 LMQEHADELIQGIEIVEHILKPKLTII 212


>gi|187777437|ref|ZP_02993910.1| hypothetical protein CLOSPO_01004 [Clostridium sporogenes ATCC
           15579]
 gi|187774365|gb|EDU38167.1| hypothetical protein CLOSPO_01004 [Clostridium sporogenes ATCC
           15579]
          Length = 431

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 38/242 (15%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I++ ++ +G+ G GGAGF T +K              ++ NA E EP    + + + +
Sbjct: 81  NNILDLIQEAGIVGMGGAGFPTHIKMDV-----DLNGGVVIANAVECEPLLAHNINQIVN 135

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           EP  + +G   A  A+ A      ++ + +    SL+  +                 D +
Sbjct: 136 EPELIYKGLCYAMEAVNASKGIFAIKSKNVEAISSLKNIIK----------------DSN 179

Query: 161 IIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           I +   +  Y  GEE A++  + GK  G  +L  P  AN  +    T     E++ +   
Sbjct: 180 IKIVELSDMYPMGEERAIIREVLGKLLGTSQL--PLEANAVVSNVETLAKIAEAVELKKP 237

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           ++ +  +       +N   +++F     +N P      +  T  E+IE   GGI G +  
Sbjct: 238 VISKNITVVGKL--KNGLKSQVF-----MNVP------IGTTVREIIEA-AGGIDGEYGE 283

Query: 280 LL 281
           ++
Sbjct: 284 II 285


>gi|223041743|ref|ZP_03611936.1| electron transport complex protein RnfC [Actinobacillus minor 202]
 gi|223017427|gb|EEF15845.1| electron transport complex protein RnfC [Actinobacillus minor 202]
          Length = 571

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           ++  L+     I+ +V   G+ G GGA F T  K  F  K C      L++N  E EP  
Sbjct: 138 IEDFLQLTSGEIVEKVYRYGIAGLGGAVFPTASKLHFADKRCK----VLIINGAECEPYI 193

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+     LIEG  I  + +      I +     +  ++++ A        L G
Sbjct: 194 TCDDR-LMQEYADELIEGIRILRYVLRPEEVVIAIEDNKPKAIQAVEKA--------LKG 244

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           +N       D+ V      Y  G    L++ L G
Sbjct: 245 AN-------DMFVRAIPTQYPSGASDQLVQILTG 271


>gi|219854110|ref|YP_002471232.1| hypothetical protein CKR_0767 [Clostridium kluyveri NBRC 12016]
 gi|219567834|dbj|BAH05818.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 442

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 38/201 (18%)

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           + +  Y +VN  E EP    D+ +MR+    ++E       AIGA  A I ++  +  E 
Sbjct: 28  NTKVEYFIVNGLECEPLLQSDKYLMRNYSDEIVETVQKIGEAIGAAHAVIGLKAAYHTEI 87

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           E+L+ +++            KL   V++ +      Y  G+E  L+  + G     R  P
Sbjct: 88  EALKKSIN------------KLNSTVELFLSE--AFYPAGDEQVLVYEVTG-----RTIP 128

Query: 194 P--FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           P   P++VG       V+NV ++  +   +      Y           K  ++ G V  P
Sbjct: 129 PGGIPSSVG-----AVVSNVGTVVNIADAINDKPVTY-----------KYVTVIGEVGNP 172

Query: 252 CTVEESMSITFDELIEKHCGG 272
             ++  +     E I+K CGG
Sbjct: 173 SIIKVPIGTKVMECIDK-CGG 192


>gi|152979363|ref|YP_001344992.1| putative glutamate synthase (NADPH) small subunit [Actinobacillus
           succinogenes 130Z]
 gi|150841086|gb|ABR75057.1| FAD dependent oxidoreductase [Actinobacillus succinogenes 130Z]
          Length = 612

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 40/74 (54%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR+G   +  ++ +++ G   +  +  + E+++ I   + CA+G   A+ I 
Sbjct: 50  QTCGKCVPCRDGIPQLSILVRKVLDGEGDESTMKQIRELAEMIRDGSDCAIGYQPAFEIL 109

Query: 403 GLIKNFRPLIEERI 416
             I+ F+   E  I
Sbjct: 110 DSIEEFKEEYESHI 123


>gi|229518065|ref|ZP_04407509.1| electron transport complex protein RnfC [Vibrio cholerae RC9]
 gi|229344780|gb|EEO09754.1| electron transport complex protein RnfC [Vibrio cholerae RC9]
          Length = 725

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 161 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 216

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 217 YAHEIIQGIEIVEHILKPKLTII 239


>gi|121729986|ref|ZP_01682403.1| RnfC-related protein [Vibrio cholerae V52]
 gi|147674223|ref|YP_001216487.1| electron transport complex protein RnfC [Vibrio cholerae O395]
 gi|262167228|ref|ZP_06034940.1| electron transport complex protein RnfC [Vibrio cholerae RC27]
 gi|121628272|gb|EAX60785.1| RnfC-related protein [Vibrio cholerae V52]
 gi|146316106|gb|ABQ20645.1| RnfC-related protein [Vibrio cholerae O395]
 gi|262024372|gb|EEY43061.1| electron transport complex protein RnfC [Vibrio cholerae RC27]
          Length = 773

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212


>gi|254848145|ref|ZP_05237495.1| electron transport complex protein RnfC [Vibrio cholerae MO10]
 gi|298498872|ref|ZP_07008679.1| electron transport complex protein RnfC [Vibrio cholerae MAK 757]
 gi|254843850|gb|EET22264.1| electron transport complex protein RnfC [Vibrio cholerae MO10]
 gi|297543205|gb|EFH79255.1| electron transport complex protein RnfC [Vibrio cholerae MAK 757]
          Length = 776

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 136 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 191

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 192 YAHEIIQGIEIVEHILKPKLTII 214


>gi|255526883|ref|ZP_05393780.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|296186944|ref|ZP_06855344.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255509446|gb|EET85789.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|296048382|gb|EFG87816.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 41/212 (19%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y ++N  E EP    D+ IMR++   +++        + A    I ++ E+ +E E+L+
Sbjct: 31  EYFIINGLECEPLLQSDKYIMRNKSDEIVKAAEEIGKLVEASNIVIGLKKEYEKEIEALK 90

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--F 195
            ++D+      L SN  L Y  D+        Y  G+E  L+  + G     R  PP   
Sbjct: 91  KSIDK------LNSNITL-YLSDVF-------YPAGDEQILVYEVTG-----RTIPPAGI 131

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P NVG       V+NV ++  +   +      Y           K  ++ G V  P  ++
Sbjct: 132 PLNVG-----AVVSNVSTVFNIYEAMEDKPVMY-----------KYVTVIGEVGTPSIIK 175

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
             +     E IE  CGG +   D+  AVI GG
Sbjct: 176 VPIGTPVLECIE-SCGGAK--LDD-YAVIMGG 203


>gi|153953484|ref|YP_001394249.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|153953488|ref|YP_001394253.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|219854106|ref|YP_002471228.1| hypothetical protein CKR_0763 [Clostridium kluyveri NBRC 12016]
 gi|146346365|gb|EDK32901.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|146346369|gb|EDK32905.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|219567830|dbj|BAH05814.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 441

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 38/201 (18%)

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           + +  Y +VN  E EP    D+ +MR+    ++E       AIGA  A I ++  +  E 
Sbjct: 27  NTKVEYFIVNGLECEPLLQSDKYLMRNYSDEIVETVQKIGEAIGAAHAVIGLKAAYHTEI 86

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           E+L+ +++            KL   V++ +      Y  G+E  L+  + G     R  P
Sbjct: 87  EALKKSIN------------KLNSTVELFLSE--AFYPAGDEQVLVYEVTG-----RTIP 127

Query: 194 P--FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           P   P++VG       V+NV ++  +   +      Y           K  ++ G V  P
Sbjct: 128 PGGIPSSVG-----AVVSNVGTVVNIADAINDKPVTY-----------KYVTVIGEVGNP 171

Query: 252 CTVEESMSITFDELIEKHCGG 272
             ++  +     E I+K CGG
Sbjct: 172 SIIKVPIGTKVMECIDK-CGG 191


>gi|87118385|ref|ZP_01074284.1| electron transport complex protein RnfC [Marinomonas sp. MED121]
 gi|86166019|gb|EAQ67285.1| electron transport complex protein RnfC [Marinomonas sp. MED121]
          Length = 1251

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 26/163 (15%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ +   G+ G GGAGF T +K +   K      H L++NA E EP    D  ++R + 
Sbjct: 130 VVSHLAEMGIVGMGGAGFPTQVKLAGATKHTI---HELIINAAECEPYITADDMLIREKT 186

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             LI+G  +    I A    I +      ++ +++   DE           +   ++D++
Sbjct: 187 DALIKGIQVLQTLIEAQRTIIGIED---NKQTAIKLLTDEI---------ERTKANIDVV 234

Query: 163 VHHGAGAYICGEETALLESLEGKK---GQPRLKPPFPANVGLY 202
           V      Y  G E  L++ + GK+   GQ       PA++G+ 
Sbjct: 235 VL--PTKYPSGGEKQLIQLITGKEVPSGQ------LPADIGVM 269


>gi|121587381|ref|ZP_01677151.1| RnfC-related protein [Vibrio cholerae 2740-80]
 gi|153819295|ref|ZP_01971962.1| RnfC-related protein [Vibrio cholerae NCTC 8457]
 gi|153823435|ref|ZP_01976102.1| RnfC-related protein [Vibrio cholerae B33]
 gi|255745440|ref|ZP_05419388.1| electron transport complex protein RnfC [Vibrio cholera CIRS 101]
 gi|262151308|ref|ZP_06028443.1| electron transport complex protein RnfC [Vibrio cholerae INDRE
           91/1]
 gi|17369132|sp|Q9KT88|RNFC_VIBCH RecName: Full=Electron transport complex protein rnfC
 gi|121548384|gb|EAX58446.1| RnfC-related protein [Vibrio cholerae 2740-80]
 gi|126510155|gb|EAZ72749.1| RnfC-related protein [Vibrio cholerae NCTC 8457]
 gi|126519044|gb|EAZ76267.1| RnfC-related protein [Vibrio cholerae B33]
 gi|255736515|gb|EET91912.1| electron transport complex protein RnfC [Vibrio cholera CIRS 101]
 gi|262030924|gb|EEY49553.1| electron transport complex protein RnfC [Vibrio cholerae INDRE
           91/1]
          Length = 774

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212


>gi|327483731|gb|AEA78138.1| Electron transport complex protein RnfC [Vibrio cholerae LMA3894-4]
          Length = 770

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212


>gi|331092596|ref|ZP_08341415.1| hypothetical protein HMPREF9477_02058 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400607|gb|EGG80221.1| hypothetical protein HMPREF9477_02058 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 610

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 39/74 (52%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR G   +  ++  ++ G A    +DL+ + + +I   + CA+G  AA  + 
Sbjct: 50  QTCGKCVPCRVGLWQLKNLLTDVLNGNATLDTLDLMEDSALSIMQSSDCAIGYEAAHMVY 109

Query: 403 GLIKNFRPLIEERI 416
             +  +R   EE I
Sbjct: 110 KALVGYREDFEEHI 123


>gi|298528245|ref|ZP_07015649.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511897|gb|EFI35799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 203

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ--KREIDLLYEV 381
           +R+  + +  + +  F     CG+C PC  GTG     + RL    A+   R++DLL  +
Sbjct: 23  ERACPVQQMQYFIDEFLDKPMCGKCYPCALGTGEAQIRVARLASRGAEVDSRDLDLLRRI 82

Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             N+   ++C  G      I  L++N R  I E +D+
Sbjct: 83  GDNMVRGSLCKRGKDTGEFILELLENSRDEIMEHVDR 119


>gi|328947363|ref|YP_004364700.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           succinifaciens DSM 2489]
 gi|328447687|gb|AEB13403.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           succinifaciens DSM 2489]
          Length = 449

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           G++ ++  +K +G+ G GGA F   +K +  P+       Y++VNA E EP    D   M
Sbjct: 119 GKEKVLERIKDAGIVGMGGASFPAHVKLN-PPE--DKEIDYVLVNAAECEPYLTCDERTM 175

Query: 99  RHEPHTLIEGCVIASFAIGA 118
              P  LI+G  I    +GA
Sbjct: 176 IETPEKLIDGLAIILNLVGA 195


>gi|269962090|ref|ZP_06176444.1| RnfC-related protein [Vibrio harveyi 1DA3]
 gi|269833174|gb|EEZ87279.1| RnfC-related protein [Vibrio harveyi 1DA3]
          Length = 910

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QESADALIDVIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M+     LI+G  I    +      I
Sbjct: 186 LMQEHADELIQGIEIVEHILKPKLTII 212


>gi|257066815|ref|YP_003153071.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           prevotii DSM 20548]
 gi|256798695|gb|ACV29350.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           prevotii DSM 20548]
          Length = 439

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 9/113 (7%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           DNVD   E+    I+ ++K +G+ G GGA F   +K+  +P    D    ++VN  E EP
Sbjct: 114 DNVDLNAEE----IVAKIKEAGIVGMGGAAFPAHIKY--LPAKPVDT---VIVNGAECEP 164

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
               D  +M++ P  +++    A  A+GA    I +     +  +++ +A+++
Sbjct: 165 YITCDDYLMKNRPERILKALNQAMKAVGAKKGIIAIEDNKPKAFDTMVSALEK 217


>gi|219871790|ref|YP_002476165.1| electron transport complex protein RnfC [Haemophilus parasuis
           SH0165]
 gi|219691994|gb|ACL33217.1| electron transport complex protein RnfC/NADH:ubiquinone
           oxidoreductase, subunit RnfC [Haemophilus parasuis
           SH0165]
          Length = 666

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L      II +V  +G+ G GGA F T  K     K C      L++N  E EP  
Sbjct: 126 IDDFLSLTSGQIIQKVYQAGIAGLGGAVFPTSHKLHVADKRCK----LLIINGAECEPYI 181

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           TC DR +M+     +IEG  I  + +      I +     +  ++++ A        L G
Sbjct: 182 TCDDR-LMQDYADEMIEGVRILRYVLRPEEVVIAIEDNKPKAIQAVEKA--------LKG 232

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           +N       DI V      Y  G    L++ L G
Sbjct: 233 AN-------DISVRVIPTKYPSGASDQLVQVLTG 259


>gi|226940366|ref|YP_002795440.1| Electron transport complex protein rnfC [Laribacter hongkongensis
           HLHK9]
 gi|226715293|gb|ACO74431.1| Electron transport complex protein rnfC [Laribacter hongkongensis
           HLHK9]
          Length = 440

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 41  DW----IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           DW    + + V+A+GL G GGA F T +K S   +   D    LVVN  E EP    D  
Sbjct: 121 DWSPVELASAVQATGLVGLGGAAFPTHVKMSPPKEAVLD---TLVVNGCECEPFLTADHR 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           +M      L+ G   A  A+G   A I V
Sbjct: 178 VMIERTAGLMAGIRYAMHAVGVSRALIGV 206


>gi|163802832|ref|ZP_02196721.1| electron transport complex protein RnfC [Vibrio sp. AND4]
 gi|159173372|gb|EDP58195.1| electron transport complex protein RnfC [Vibrio sp. AND4]
          Length = 911

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G+   V    ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E
Sbjct: 120 GNKTPVADYTQETADTLIDVIRLAGVSGMGGAGFPTAKKI----QSGLARTEILIVNAAE 175

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            EP    D  +M+     LI+G  I    +      I
Sbjct: 176 CEPYITADDKLMQEHADELIQGIEIVEHILKPKLTII 212


>gi|219854108|ref|YP_002471230.1| hypothetical protein CKR_0765 [Clostridium kluyveri NBRC 12016]
 gi|219854112|ref|YP_002471234.1| hypothetical protein CKR_0769 [Clostridium kluyveri NBRC 12016]
 gi|219567832|dbj|BAH05816.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
 gi|219567836|dbj|BAH05820.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 443

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 34/194 (17%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y +VNA E EP    D+ +MR+    ++    I   ++GA    I ++  +  E ++L  
Sbjct: 33  YFIVNALECEPLLQSDKYLMRNHSDEIVGATEIIGKSLGAEKIVIGLKNVYYNEIDALTN 92

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           ++             KL   V++ ++     Y  G+E  L+  + GK   P      P+ 
Sbjct: 93  SI------------KKLNSSVELFLNR--SFYPAGDEQILVYEVTGKTIAPG---AIPST 135

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VG       V+NV ++  V   L+     Y           K  ++ G V  P  V+  +
Sbjct: 136 VG-----AVVSNVGTVFNVFEALKDEPVTY-----------KYVTVVGEVASPAIVKVPI 179

Query: 259 SITFDELIEKHCGG 272
                E IEK CGG
Sbjct: 180 GTKVTECIEK-CGG 192


>gi|311279508|ref|YP_003941739.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           cloacae SCF1]
 gi|308748703|gb|ADO48455.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           cloacae SCF1]
          Length = 679

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           K RD +I  +   G+ G GGAGF TG K     +   D+   L++NA E EP    D  +
Sbjct: 130 KTRDTLIERIHQFGVAGLGGAGFPTGTKL----RGGGDKIDTLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQIVEGVRI 199


>gi|333031168|ref|ZP_08459229.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           coprosuis DSM 18011]
 gi|332741765|gb|EGJ72247.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           coprosuis DSM 18011]
          Length = 445

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
           +  + G    +S+ R   D + K  E   + I+  +   G+ G GGA F T +K +  P 
Sbjct: 97  IIDVDGDEWEESIDRS--DALIKDCELSSEDIVKRIADCGVVGLGGACFPTQVKLTPPP- 153

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
             S +   +++NA E EP    D  +M  +   +I G  I   A+  + AFI
Sbjct: 154 --SFKAECVIINAVECEPYLTADHQLMLEKAEEIIVGVTIIMKAVKVNKAFI 203


>gi|240948590|ref|ZP_04752963.1| electron transport complex protein RnfC [Actinobacillus minor
           NM305]
 gi|240297098|gb|EER47669.1| electron transport complex protein RnfC [Actinobacillus minor
           NM305]
          Length = 793

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMRHE 101
           I+ +V   G+ G GGA F T  K  F  K C      L++N  E EP  TC DR +M+  
Sbjct: 143 IVEKVYRYGIAGLGGAVFPTASKLHFADKRCK----VLIINGAECEPYITCDDR-LMQEY 197

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
              LIEG  I  + +      I +     +  ++++ A        L G+N       D+
Sbjct: 198 ADELIEGIRILRYVLRPEEVVIAIEDNKPKAIQAVEKA--------LKGAN-------DM 242

Query: 162 IVHHGAGAYICGEETALLESLEG 184
            V      Y  G    L++ L G
Sbjct: 243 FVRAIPTQYPSGASDQLVQILTG 265


>gi|222099416|ref|YP_002533984.1| Electron transport complex protein [Thermotoga neapolitana DSM
           4359]
 gi|221571806|gb|ACM22618.1| Electron transport complex protein [Thermotoga neapolitana DSM
           4359]
          Length = 435

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 20/187 (10%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I++ +K +G+ G GGA F T +K S  P+   D    L++N  E EP    D  +M 
Sbjct: 119 KEEILDVIKKAGVVGLGGAMFPTHVKLSPPPEKKIDT---LIINGAECEPVLTIDHRMML 175

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                +++G +I    +G   A + V    +     L+                  GY V
Sbjct: 176 ERAEDILQGILIMMKVLGVQKAVVGVENNKMDAYNHLKKVFK--------------GYPV 221

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D+ +      Y  G E  L+ ++  +K  PR   P    V +    T V   E++     
Sbjct: 222 DVALLK--TKYPQGAEKQLIYAITRRK-VPRGGLPMDVGVVVQNVGTCVAVKEAVVDGKP 278

Query: 220 ILRRGAS 226
           ++ RG +
Sbjct: 279 LVERGMT 285


>gi|262191542|ref|ZP_06049725.1| electron transport complex protein RnfC [Vibrio cholerae CT
           5369-93]
 gi|262032596|gb|EEY51151.1| electron transport complex protein RnfC [Vibrio cholerae CT
           5369-93]
          Length = 814

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212


>gi|28898878|ref|NP_798483.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260897154|ref|ZP_05905650.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           Peru-466]
 gi|260902709|ref|ZP_05911104.1| electron transport complex, rnfABCDGE type, c subunit family
           protein [Vibrio parahaemolyticus AQ4037]
 gi|28807097|dbj|BAC60367.1| RnfC-related protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087160|gb|EFO36855.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           Peru-466]
 gi|308109009|gb|EFO46549.1| electron transport complex, rnfABCDGE type, c subunit family
           protein [Vibrio parahaemolyticus AQ4037]
          Length = 869

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QESADALIDIIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M+     LI+G  I    +      I
Sbjct: 186 LMQEHAEELIQGIEIVEHILKPKLTII 212


>gi|153953486|ref|YP_001394251.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|153953490|ref|YP_001394255.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|146346367|gb|EDK32903.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|146346371|gb|EDK32907.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
          Length = 442

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 34/194 (17%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y +VNA E EP    D+ +MR+    ++    I   ++GA    I ++  +  E ++L  
Sbjct: 32  YFIVNALECEPLLQSDKYLMRNHSDEIVGATEIIGKSLGAEKIVIGLKNVYYNEIDALTN 91

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           ++             KL   V++ ++     Y  G+E  L+  + GK   P      P+ 
Sbjct: 92  SI------------KKLNSSVELFLNR--SFYPAGDEQILVYEVTGKTIAPG---AIPST 134

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VG       V+NV ++  V   L+     Y           K  ++ G V  P  V+  +
Sbjct: 135 VG-----AVVSNVGTVFNVFEALKDEPVTY-----------KYVTVVGEVASPAIVKVPI 178

Query: 259 SITFDELIEKHCGG 272
                E IEK CGG
Sbjct: 179 GTKVTECIEK-CGG 191


>gi|320156874|ref|YP_004189253.1| electron transport complex protein RnfC [Vibrio vulnificus
           MO6-24/O]
 gi|319932186|gb|ADV87050.1| electron transport complex protein RnfC [Vibrio vulnificus
           MO6-24/O]
          Length = 690

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 20/150 (13%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D++++ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QQSSDYLLDVIRMAGISGMGGAGFPTAKKI----QSGLGRTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +++     +++G  I    +      I +        ++L++A                 
Sbjct: 186 LLQEHAEEVLQGIEIVEHILQPKLTIIGIEDNKPEAIKALESA----------------A 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKK 186
            + DI++      Y  G E  L++ L  K+
Sbjct: 230 QNRDIVIRVIPTKYPSGGEKQLIKVLTNKE 259


>gi|290967901|ref|ZP_06559451.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290782040|gb|EFD94618.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 446

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 99/254 (38%), Gaps = 51/254 (20%)

Query: 40  RDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPG- 90
           RDW       I++ VKA G+ G GGA F   +K +       ++P    +VN  E EP  
Sbjct: 115 RDWEKMSKEEILDAVKACGIVGCGGATFPVHVKLT------PNKPVDSFIVNGAECEPYL 168

Query: 91  TCKDRDIMRHEP-HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           TC  R ++  EP    + G  I    +G    +I +         +L  A  +     ++
Sbjct: 169 TCDFRSMVEAEPTRKFVTGVQICMKVLGVKKGYIGIEDNKPEAIANLTEAFRQVPEVTVV 228

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
              +K               Y  G E  ++E+  G+  +P      P NVG       V+
Sbjct: 229 TCKTK---------------YPQGAEKMMIEACTGRLVEPG---GLPMNVG-----CVVS 265

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV ++  +   +  G               ++ +++G  +  P  +   +  T++E I+ 
Sbjct: 266 NVGTVIAITDAVCYGIPLIE----------RVTTVTGDCIAEPKNLRLRIGTTYEEAIQ- 314

Query: 269 HCGGIRGGWDNLLA 282
           HCGG     D ++A
Sbjct: 315 HCGGFSQQPDRVIA 328


>gi|227012832|gb|ACP09042.1| RnfC-related protein [Vibrio cholerae O395]
          Length = 800

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 161 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 216

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 217 YAHEIIQGIEIVEHILKPKLTII 239


>gi|16800175|ref|NP_470443.1| hypothetical protein lin1106 [Listeria innocua Clip11262]
 gi|16413565|emb|CAC96337.1| lin1106 [Listeria innocua Clip11262]
          Length = 454

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 67/320 (20%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 6   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E  AS              + 
Sbjct: 59  VETIKAIEMVKNQVGAEFAVIATKRYYTEEIAALRSAITELNAS--------------VT 104

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 148

Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276
                 W      +++     K  +++G V  P  ++  +   F+      C    GG  
Sbjct: 149 ------WNVFHAIQDDAPVIRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 197

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D  L           L  G M G + D   + E      T+ +IV + +  + K  ++ 
Sbjct: 198 LDEYLF----------LDGGPMMGKLNDQSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQT 247

Query: 337 --SVFYKHES-CGQCTPCRE 353
              +F + +S C QC+ C +
Sbjct: 248 VEQIFNETKSACIQCSLCSD 267


>gi|332297502|ref|YP_004439424.1| Electron transport complex protein rnfC [Treponema brennaborense
           DSM 12168]
 gi|332180605|gb|AEE16293.1| Electron transport complex protein rnfC [Treponema brennaborense
           DSM 12168]
          Length = 467

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           D   R  +  V       ++  +  ++ +G+ G GGA F T +K +        +  Y++
Sbjct: 123 DDSDRTEFLPVLDPFACSKEEALTRIREAGIVGMGGAAFPTHVKLN---PPAGKKIEYVL 179

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            NA E EP    D   M   P  LI+G  IA    GA
Sbjct: 180 ANAAECEPYLTIDERTMIETPQKLIDGLAIAMNVTGA 216


>gi|229515401|ref|ZP_04404860.1| electron transport complex protein RnfC [Vibrio cholerae TMA 21]
 gi|229347170|gb|EEO12130.1| electron transport complex protein RnfC [Vibrio cholerae TMA 21]
          Length = 800

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 161 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 216

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 217 YAHEIIQGIEIVEHILKPKLTII 239


>gi|291613328|ref|YP_003523485.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291583440|gb|ADE11098.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 492

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 40/240 (16%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           ++VD       + I   V  +G+ G GGA F   +K +      S     L++N  E EP
Sbjct: 113 ESVDDPFALSPENIAARVAVAGIVGLGGATFPAALKLNLS---RSSGVQTLIMNGGECEP 169

Query: 90  G-TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
             TC DR IMR     ++EG  + + A+ A              +E L    D    +  
Sbjct: 170 YLTCDDR-IMRERAGQIVEGIRLIAIAVAA--------------KEVLVGIEDNKPEAIA 214

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
               +  G  V ++       Y  G E  +++ L GK+     +   PA++G+      V
Sbjct: 215 AMQAAAEGSAVKVVTM--PSMYPMGSEKQIIQVLTGKEIPAGGR---PADIGVL-----V 264

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIE 267
           +NV +   V   +R G    S          ++ ++S G +   C VE  +     ELI+
Sbjct: 265 HNVATAFAVQQAIRYGRPLIS----------RIVTVSGGAIKTACNVEALVGTPVQELID 314


>gi|300936047|ref|ZP_07150994.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 21-1]
 gi|300458773|gb|EFK22266.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 21-1]
          Length = 578

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|167038505|ref|YP_001666083.1| RnfABCDGE type electron transport complex subunit C
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256751374|ref|ZP_05492253.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116900|ref|YP_004187059.1| RnfABCDGE type electron transport complex subunit C
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166857339|gb|ABY95747.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749756|gb|EEU62781.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929991|gb|ADV80676.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 443

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 42/233 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II  +K +G+ G GGAGF T +K S        +   ++VN  E EP    D  +M   P
Sbjct: 127 IIEIIKEAGITGMGGAGFPTHVKLS---PPSDKKIDTILVNGAECEPYLTTDHRLMVEYP 183

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++ G      A+G     I                V++     +L        + +I 
Sbjct: 184 EKIVFGLKAIMKAVGVERGII---------------GVEKNKPDAILALREASKDEKNIQ 228

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +      Y  G+E  L+ ++ G     R+ P    P +VG+      VN   + AV   I
Sbjct: 229 IATLKVKYPQGDEKRLINAILG-----RIVPSGGLPMDVGVI----VVNAATTKAVADAI 279

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272
           L  G   Y           ++ +I+GH +  P  +   +     +LIE  CGG
Sbjct: 280 L-EGKPLYE----------RVTTITGHGIKQPKNLLVKIGTPLKDLIE-QCGG 320


>gi|167759827|ref|ZP_02431954.1| hypothetical protein CLOSCI_02190 [Clostridium scindens ATCC 35704]
 gi|167662446|gb|EDS06576.1| hypothetical protein CLOSCI_02190 [Clostridium scindens ATCC 35704]
          Length = 610

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR G G +   ++ ++ G A    +D++ + + +I     CA+G +AA    
Sbjct: 50  QTCGKCVPCRIGLGQLNHFIKDVLDGKATMETLDIMEQTALSIMESADCAIGYEAANMVY 109

Query: 402 QGLI 405
           +GLI
Sbjct: 110 KGLI 113


>gi|15641030|ref|NP_230661.1| electron transport complex protein RnfC [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|227081189|ref|YP_002809740.1| RnfC-related protein [Vibrio cholerae M66-2]
 gi|229505386|ref|ZP_04394896.1| electron transport complex protein RnfC [Vibrio cholerae BX 330286]
 gi|229510944|ref|ZP_04400423.1| electron transport complex protein RnfC [Vibrio cholerae B33]
 gi|229608405|ref|YP_002879053.1| electron transport complex protein RnfC [Vibrio cholerae MJ-1236]
 gi|9655479|gb|AAF94176.1| RnfC-related protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227009077|gb|ACP05289.1| RnfC-related protein [Vibrio cholerae M66-2]
 gi|229350909|gb|EEO15850.1| electron transport complex protein RnfC [Vibrio cholerae B33]
 gi|229357609|gb|EEO22526.1| electron transport complex protein RnfC [Vibrio cholerae BX 330286]
 gi|229371060|gb|ACQ61483.1| electron transport complex protein RnfC [Vibrio cholerae MJ-1236]
          Length = 801

 Score = 40.8 bits (94), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 161 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 216

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 217 YAHEIIQGIEIVEHILKPKLTII 239


>gi|255522301|ref|ZP_05389538.1| hypothetical protein LmonocFSL_13977 [Listeria monocytogenes FSL
           J1-175]
          Length = 211

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL++NA E EP    D  +MR+     I+   +    +GA  A I  +  +  E  +L++
Sbjct: 32  YLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRS 91

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FP 196
           A+ E               D  + +H     Y  G+E  ++  + G     R+ PP   P
Sbjct: 92  AITEL--------------DASVTIHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIP 132

Query: 197 ANVG 200
             VG
Sbjct: 133 LMVG 136


>gi|255017212|ref|ZP_05289338.1| hypothetical protein LmonF_04473 [Listeria monocytogenes FSL
           F2-515]
          Length = 169

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL++NA E EP    D  +MR+     I+   +    +GA  A I  +  +  E  +L++
Sbjct: 32  YLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRS 91

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FP 196
           A+ E               D  + +H     Y  G+E  ++  + G     R+ PP   P
Sbjct: 92  AITEL--------------DASVTIHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIP 132

Query: 197 ANVG 200
             VG
Sbjct: 133 LMVG 136


>gi|328474563|gb|EGF45368.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           10329]
          Length = 907

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  +M+ 
Sbjct: 134 DTLIDIIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDKLMQE 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
               LI+G  I    +      I
Sbjct: 190 HAEELIQGIEIVEHILKPKLTII 212


>gi|300114448|ref|YP_003761023.1| electron transport complex RnfABCDGE type subunit C [Nitrosococcus
           watsonii C-113]
 gi|299540385|gb|ADJ28702.1| electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus watsonii C-113]
          Length = 515

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
           N ++ +G+ G GGAGF   +K +  P     +   L++N  E EP    D  +MR     
Sbjct: 131 NLIRRAGIVGLGGAGFPAFIKLNPGPH---PKVKTLILNGAECEPYITCDEALMRERAEE 187

Query: 105 LIEGCVIASFAIGAHCAFI 123
           +I+G  I + A+  H   I
Sbjct: 188 IIQGAAIMAHALNVHHCLI 206


>gi|153800907|ref|ZP_01955493.1| RnfC-related protein [Vibrio cholerae MZO-3]
 gi|124123498|gb|EAY42241.1| RnfC-related protein [Vibrio cholerae MZO-3]
          Length = 853

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212


>gi|313619417|gb|EFR91131.1| PduS type ferredoxin, putative [Listeria innocua FSL S4-378]
          Length = 455

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 67/320 (20%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 7   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 59

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E  AS              + 
Sbjct: 60  VETIKAIEMVKNQVGAEFAVIATKRYYTEEIAALRSAITELNAS--------------VT 105

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 106 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 149

Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276
                 W      +++     K  +++G V  P  ++  +   F+      C    GG  
Sbjct: 150 ------WNVFHAIQDDAPVIRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 198

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D  L           L  G M G + D   + E      T+ +IV + +  + K  ++ 
Sbjct: 199 LDEYLF----------LDGGPMMGKLNDQSTIAEKVVTKTTSGMIVAEDTGYLHKLHYQT 248

Query: 337 --SVFYKHES-CGQCTPCRE 353
              +F + +S C QC+ C +
Sbjct: 249 VEQIFNETKSACIQCSLCSD 268


>gi|153824972|ref|ZP_01977639.1| RnfC-related protein [Vibrio cholerae MZO-2]
 gi|149741484|gb|EDM55514.1| RnfC-related protein [Vibrio cholerae MZO-2]
          Length = 853

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 190 YAHEIIQGIEIVEHILKPKLTII 212


>gi|253682064|ref|ZP_04862861.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum D str. 1873]
 gi|253561776|gb|EES91228.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum D str. 1873]
          Length = 439

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 120/316 (37%), Gaps = 62/316 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ I+  VK +G+ G GGA F T +K +  P    D    +++N  E EP    D  
Sbjct: 118 EMTKEEIVELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIILNGAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  E + ++EG  I          +I +        E+L+ A  +              
Sbjct: 175 LMLEETNMIVEGLKIILHMHPNAKGYIGIEDNKKNAIEALRNATKDIP------------ 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+ S+  K+  P  K P  A     GC   V NV ++  
Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYSVM-KREVPSGKLPADA-----GC--IVQNVNTVRE 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +  G    S          ++ +++G  V  P  +   + +++ EL+E  C G + 
Sbjct: 272 VYNAVVNGRPTIS----------RVVTVTGEAVKNPKNLRVRLGMSYRELVEA-CDGFK- 319

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             ++ + VI GG                       MG  + T  V V+  S+ I+    +
Sbjct: 320 --EDPVKVISGGPM---------------------MGMAVSTLDVPVIKGSSGILCLTEK 356

Query: 336 LSVFYKHESCGQCTPC 351
            +V     SC +C  C
Sbjct: 357 QAVLPDESSCIRCGRC 372


>gi|298380776|ref|ZP_06990375.1| electron transport complex protein RnfC [Escherichia coli FVEC1302]
 gi|298278218|gb|EFI19732.1| electron transport complex protein RnfC [Escherichia coli FVEC1302]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|229525628|ref|ZP_04415033.1| electron transport complex protein RnfC [Vibrio cholerae bv.
           albensis VL426]
 gi|229339209|gb|EEO04226.1| electron transport complex protein RnfC [Vibrio cholerae bv.
           albensis VL426]
          Length = 841

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 161 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 216

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 217 YAHEIIQGIEIVEHILKPKLTII 239


>gi|255505118|ref|ZP_05344567.3| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella
           formatexigens DSM 14469]
 gi|255269103|gb|EET62308.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella
           formatexigens DSM 14469]
          Length = 463

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +  I++ ++ +G+ G GGAGF T +K   MPK   D   +++VN  E EP    D  +M 
Sbjct: 144 KQEILDAIREAGIVGLGGAGFPTHVK--LMPK-NPDAIDHIIVNGAECEPYLTSDYRMMI 200

Query: 100 HEPHTLIEG 108
             P  ++ G
Sbjct: 201 ENPEQIVGG 209


>gi|210623717|ref|ZP_03294001.1| hypothetical protein CLOHIR_01952 [Clostridium hiranonis DSM 13275]
 gi|210153405|gb|EEA84411.1| hypothetical protein CLOHIR_01952 [Clostridium hiranonis DSM 13275]
          Length = 447

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K+ +  ++ I+  +K +G+ G GGA F T +K    P   ++   ++++N  E EP    
Sbjct: 115 KLEDLSKEEIVEIIKEAGIVGMGGATFPTHVKVCPPPGSTAE---FVILNGAECEPYLTA 171

Query: 94  DRDIMRHEPHTLIEGC 109
           D  +M  +P  ++ GC
Sbjct: 172 DHRLMLEQPEKVVLGC 187


>gi|210615656|ref|ZP_03290702.1| hypothetical protein CLONEX_02920 [Clostridium nexile DSM 1787]
 gi|210150199|gb|EEA81208.1| hypothetical protein CLONEX_02920 [Clostridium nexile DSM 1787]
          Length = 446

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ I+N +  +G+ G GGAGF T +K S  PK   ++  Y++ N  E EP    D  
Sbjct: 125 ELTKEEILNLIGEAGIVGMGGAGFPTKVKLS--PKE-PEKIEYVIANCAECEPYITADYR 181

Query: 97  IMRHEPHTLIEG 108
            M   P  L+ G
Sbjct: 182 RMLENPEELVSG 193


>gi|47094983|ref|ZP_00232596.1| PduS protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258612133|ref|ZP_05267836.2| PduS protein [Listeria monocytogenes F6900]
 gi|293596510|ref|ZP_05261826.2| PduS protein [Listeria monocytogenes J2818]
 gi|47016601|gb|EAL07521.1| PduS protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258608728|gb|EEW21336.1| PduS protein [Listeria monocytogenes F6900]
 gi|293589768|gb|EFF98102.1| PduS protein [Listeria monocytogenes J2818]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 6   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E               D  + 
Sbjct: 59  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 104

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200
           +H     Y  G+E  ++  + G     R+ PP   P  VG
Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 139


>gi|213418457|ref|ZP_03351523.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 267

 Score = 40.4 bits (93), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGDDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                ++EG  I +  +      I +     +    L+A + + +               
Sbjct: 188 DCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAH--------------- 232

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPR 190
           DI +      Y  G +     + +GK G PR
Sbjct: 233 DISLRVIPTKYPSGGDKTAHPNTDGKTGSPR 263


>gi|284801462|ref|YP_003413327.1| hypothetical protein LM5578_1215 [Listeria monocytogenes 08-5578]
 gi|284994604|ref|YP_003416372.1| hypothetical protein LM5923_1168 [Listeria monocytogenes 08-5923]
 gi|284057024|gb|ADB67965.1| hypothetical protein LM5578_1215 [Listeria monocytogenes 08-5578]
 gi|284060071|gb|ADB71010.1| hypothetical protein LM5923_1168 [Listeria monocytogenes 08-5923]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 28/160 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 3   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E  AS              + 
Sbjct: 56  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS--------------VT 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200
           +H     Y  G+E  ++  + G     R+ PP   P  VG
Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 136


>gi|293405128|ref|ZP_06649120.1| electron transport complex protein RnfC [Escherichia coli FVEC1412]
 gi|291427336|gb|EFF00363.1| electron transport complex protein RnfC [Escherichia coli FVEC1412]
          Length = 633

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|260773218|ref|ZP_05882134.1| electron transport complex protein RnfC [Vibrio metschnikovii CIP
           69.14]
 gi|260612357|gb|EEX37560.1| electron transport complex protein RnfC [Vibrio metschnikovii CIP
           69.14]
          Length = 734

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + +I  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 EQLIEIIRNAGISGMGGAGFPTAKKI----QTGLSRTEILIINAAECEPYITADDALMRF 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
               +I+G  I    +      I +        ++L+ A  E
Sbjct: 190 HADEIIQGISIVEHILRPKLTIIGIEDNKPEAIQALEQAAKE 231


>gi|167948564|ref|ZP_02535638.1| electron transport complex, RnfABCDGE type, C subunit [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 285

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  V+ SG+ G GGA F + +K +       D    LVVN  E EP    D  +M   P
Sbjct: 56  LIQAVQESGMVGLGGAAFPSHVKLTIPEGKQVD---TLVVNGCECEPYLSCDHRVMLEHP 112

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             L+ G   A  A G   A I +    +   E LQ
Sbjct: 113 KALMRGIRYAMRATGTKQAVIGIEDNKMDAVEQLQ 147


>gi|46907359|ref|YP_013748.1| PduS protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|46880626|gb|AAT03925.1| PduS protein [Listeria monocytogenes serotype 4b str. F2365]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 126/320 (39%), Gaps = 67/320 (20%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 6   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E               D  + 
Sbjct: 59  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 104

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 148

Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276
                 W      +++     K  +++G V  P  ++  +   F+      C    GG  
Sbjct: 149 ------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 197

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D  L           L  G M G + D   + E      T+ +IV + +  + K  ++ 
Sbjct: 198 LDEYLF----------LDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQT 247

Query: 337 --SVFYKHES-CGQCTPCRE 353
              +F + +S C QC+ C +
Sbjct: 248 VEQIFNETKSACIQCSLCSD 267


>gi|317133224|ref|YP_004092538.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ethanoligenens harbinense YUAN-3]
 gi|315471203|gb|ADU27807.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ethanoligenens harbinense YUAN-3]
          Length = 614

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F + ++CG+C PCR G   +  ++E ++   A  + ++L+   ++ I     CA+G  AA
Sbjct: 46  FCRAQTCGKCVPCRIGLAQLENLLEDVLDHRADMQTLELIERTARVIAASADCAIGWEAA 105

Query: 399 WPIQGLIKNFRPLIEERIDQYHRCN 423
             +   +  FR    E I  + RC 
Sbjct: 106 NMVLKGVHGFRDDYIEHI-THGRCT 129


>gi|153829524|ref|ZP_01982191.1| electron transport complex protein RnfC [Vibrio cholerae 623-39]
 gi|148874984|gb|EDL73119.1| electron transport complex protein RnfC [Vibrio cholerae 623-39]
          Length = 853

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 190 YAHEIIQGIEIVEHILKPKLTVI 212


>gi|313157095|gb|EFR56525.1| electron transport complex, RnfABCDGE type, C subunit [Alistipes
           sp. HGB5]
          Length = 447

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II  +K +G+ G GGA F T +K S  P     +   L++N  E EP    D   M    
Sbjct: 125 IIARIKDAGIVGMGGATFPTHVKLSVPP---GRKAEALIINGVECEPYLTSDHRTMLEHG 181

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             L+ G  I   AI    A+I
Sbjct: 182 EELLVGVTILMKAIAVEKAYI 202


>gi|331663101|ref|ZP_08364011.1| electron transport complex protein RnfC [Escherichia coli TA143]
 gi|331058900|gb|EGI30877.1| electron transport complex protein RnfC [Escherichia coli TA143]
          Length = 640

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|293409940|ref|ZP_06653516.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470408|gb|EFF12892.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 634

 Score = 40.4 bits (93), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|254898697|ref|ZP_05258621.1| hypothetical protein LmonJ_02740 [Listeria monocytogenes J0161]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 28/160 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 3   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E  AS              + 
Sbjct: 56  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS--------------VT 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200
           +H     Y  G+E  ++  + G     R+ PP   P  VG
Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 136


>gi|291288394|ref|YP_003505210.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885554|gb|ADD69254.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 657

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 17/131 (12%)

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESC-GQCTPCREG 354
           G+   A++++DG             +V D   D++ A+         E C G+C P R G
Sbjct: 37  GKPLKALINWDGF------------LVYDEGVDMLAALANYMEEISSEGCCGRCFPGRVG 84

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           T  +   + ++  G   + EI+   +++++I     C +   +  P++  ++ FR  +  
Sbjct: 85  TKLLAEQLMKIRSGETSEEEINKAVDMAESIFNSAKCTVAPTSTVPVRAFLREFRDQVTA 144

Query: 415 RI----DQYHR 421
           ++     +YH+
Sbjct: 145 QVAKGTTEYHK 155


>gi|258611525|ref|ZP_05233188.2| PduS protein [Listeria monocytogenes FSL N3-165]
 gi|258600897|gb|EEW14222.1| PduS protein [Listeria monocytogenes FSL N3-165]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 6   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E               D  + 
Sbjct: 59  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 104

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200
           +H     Y  G+E  ++  + G     R+ PP   P  VG
Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 139


>gi|254993051|ref|ZP_05275241.1| PduS protein [Listeria monocytogenes FSL J2-064]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 127/320 (39%), Gaps = 67/320 (20%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 3   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E  AS              + 
Sbjct: 56  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS--------------VT 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 145

Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276
                 W      +++     K  +++G V  P  ++  +   F+      C    GG  
Sbjct: 146 ------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 194

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D  L           L  G M G + D   + E      T+ +IV + +  + K  ++ 
Sbjct: 195 LDEYLF----------LDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQT 244

Query: 337 --SVFYKHES-CGQCTPCRE 353
              +F + +S C QC+ C +
Sbjct: 245 VEQIFNETKSACIQCSLCSD 264


>gi|170755456|ref|YP_001780021.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum B1 str. Okra]
 gi|169120668|gb|ACA44504.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 439

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 122/300 (40%), Gaps = 54/300 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  E   ++EG  I          +I +        E+++ A     + G+        
Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKA-----SEGI-------- 221

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+ +++G++ Q       PA+ G          V++ A 
Sbjct: 222 --ANIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAGCV--------VQNTAT 268

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V  I       Y+          ++ +++G  V  P  +   +     EL+E  CGG + 
Sbjct: 269 VREI-------YNAVVLGRPLTERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYK- 319

Query: 276 GWDNLLAVIPGGS----SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
             ++ + VI GG     ++P L    ++G+     GL  +     TAA  V+ +++  I+
Sbjct: 320 --EDPVKVISGGPMMGMTIPTLDIPTVKGS----SGLLSL-----TAAQAVLPQASSCIR 368


>gi|322804644|emb|CBZ02196.1| electron transport complex protein RnfC [Clostridium botulinum
           H04402 065]
          Length = 403

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P     +   ++VNA E EP    D  
Sbjct: 82  EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPP---DKKIDSIIVNAAECEPYLTCDHR 138

Query: 97  IMRHEPHTLIEG 108
           +M  E   ++EG
Sbjct: 139 LMLEESDKIVEG 150


>gi|47091942|ref|ZP_00229736.1| PduS protein [Listeria monocytogenes str. 4b H7858]
 gi|254932978|ref|ZP_05266337.1| PduS protein [Listeria monocytogenes HPB2262]
 gi|47019658|gb|EAL10397.1| PduS protein [Listeria monocytogenes str. 4b H7858]
 gi|293584536|gb|EFF96568.1| PduS protein [Listeria monocytogenes HPB2262]
 gi|328475177|gb|EGF45958.1| PduS protein [Listeria monocytogenes 220]
 gi|332311528|gb|EGJ24623.1| PduS type ferredoxin [Listeria monocytogenes str. Scott A]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 126/320 (39%), Gaps = 67/320 (20%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 3   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E               D  + 
Sbjct: 56  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 145

Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276
                 W      +++     K  +++G V  P  ++  +   F+      C    GG  
Sbjct: 146 ------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 194

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D  L           L  G M G + D   + E      T+ +IV + +  + K  ++ 
Sbjct: 195 LDEYLF----------LDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQT 244

Query: 337 --SVFYKHES-CGQCTPCRE 353
              +F + +S C QC+ C +
Sbjct: 245 VEQIFNETKSACIQCSLCSD 264


>gi|283785156|ref|YP_003365021.1| electron transport complex protein [Citrobacter rodentium ICC168]
 gi|282948610|emb|CBG88201.1| electron transport complex protein [Citrobacter rodentium ICC168]
          Length = 678

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L   RD +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D 
Sbjct: 128 LSHSRDELITRIHQYGVAGLGGAGFPTGVKL----QGGGDKIATLIINAAECEPYITADD 183

Query: 96  DIMRHEPHTLIEGCVI 111
            +M+     ++EG  I
Sbjct: 184 RLMQDCAAEIVEGIRI 199


>gi|237809075|ref|YP_002893515.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas
           auensis DSM 9187]
 gi|237501336|gb|ACQ93929.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas
           auensis DSM 9187]
          Length = 483

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 97/240 (40%), Gaps = 46/240 (19%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIM 98
           R+ +IN V+ +G+ G GGA F T  K         D    L++N  E EP  TC DR +M
Sbjct: 115 REEMINLVEEAGIVGMGGAMFPTSDKLRLSMHYLID---TLIINGSECEPYLTCDDR-LM 170

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDECYASGLLGSNSKL 155
           + +   ++ G         A   FI +   + E I   E+L  A       GL       
Sbjct: 171 QEQGDRIMGGIRYLQQITLADKVFIGIEENKPEAIAAMEALCKAEKNMQVVGL------- 223

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
                         Y  G E  L+E++ G++  P  K    A+VG+      V NV +  
Sbjct: 224 -----------PALYPMGSEKQLIEAVTGRQ-VPSGK--LSADVGVL-----VQNVATSI 264

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            +   LR        FGR      ++ +ISG  V  P  V   + +   E++ + CGG++
Sbjct: 265 AIFEALR--------FGRPLTH--RVITISGDAVEVPSNVMAPVGMPISEIVAQ-CGGLK 313


>gi|16803182|ref|NP_464667.1| hypothetical protein lmo1142 [Listeria monocytogenes EGD-e]
 gi|16410558|emb|CAC99220.1| lmo1142 [Listeria monocytogenes EGD-e]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 6   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E               D  + 
Sbjct: 59  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 104

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200
           +H     Y  G+E  ++  + G     R+ PP   P  VG
Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 139


>gi|313624158|gb|EFR94226.1| PduS type ferredoxin, putative [Listeria innocua FSL J1-023]
          Length = 455

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 7   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 59

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E               D  + 
Sbjct: 60  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 105

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200
           +H     Y  G+E  ++  + G     R+ PP   P  VG
Sbjct: 106 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 140


>gi|254291762|ref|ZP_04962548.1| RnfC-related protein [Vibrio cholerae AM-19226]
 gi|150422355|gb|EDN14316.1| RnfC-related protein [Vibrio cholerae AM-19226]
          Length = 854

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             H +I+G  I    +      I
Sbjct: 190 YAHEIIQGIEIVEHILKPKLTVI 212


>gi|290894304|ref|ZP_06557270.1| PduS protein [Listeria monocytogenes FSL J2-071]
 gi|290556123|gb|EFD89671.1| PduS protein [Listeria monocytogenes FSL J2-071]
          Length = 454

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 6   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E               D  + 
Sbjct: 59  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 104

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200
           +H     Y  G+E  ++  + G     R+ PP   P  VG
Sbjct: 105 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 139


>gi|153938550|ref|YP_001389736.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum F str. Langeland]
 gi|168181230|ref|ZP_02615894.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum Bf]
 gi|170759143|ref|YP_001785705.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|226947599|ref|YP_002802690.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|237793688|ref|YP_002861240.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|152934446|gb|ABS39944.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum F str. Langeland]
 gi|169406132|gb|ACA54543.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|182675506|gb|EDT87467.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum Bf]
 gi|226843244|gb|ACO85910.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|229260411|gb|ACQ51444.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|295317824|gb|ADF98201.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum F str. 230613]
          Length = 439

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVI 111
           +M  E   ++EG  I
Sbjct: 175 LMLEESDKIVEGLKI 189


>gi|323486693|ref|ZP_08092014.1| hypothetical protein HMPREF9474_03765 [Clostridium symbiosum
           WAL-14163]
 gi|323692168|ref|ZP_08106411.1| electron transport complex [Clostridium symbiosum WAL-14673]
 gi|323400074|gb|EGA92451.1| hypothetical protein HMPREF9474_03765 [Clostridium symbiosum
           WAL-14163]
 gi|323503742|gb|EGB19561.1| electron transport complex [Clostridium symbiosum WAL-14673]
          Length = 441

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I N +K +G+ G GGAGF T +K +   +   D   +++VN  E EP    D  +M 
Sbjct: 124 KEEIRNIIKEAGIVGLGGAGFPTHVKLTPKDEAAID---HVIVNGAECEPYLTSDYRVMM 180

Query: 100 HEPHTLIEG 108
             P  +I G
Sbjct: 181 ERPEQIIGG 189


>gi|224502562|ref|ZP_03670869.1| hypothetical protein LmonFR_08584 [Listeria monocytogenes FSL
           R2-561]
 gi|254830104|ref|ZP_05234759.1| hypothetical protein Lmon1_02045 [Listeria monocytogenes 10403S]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 28/160 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 3   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E  AS              + 
Sbjct: 56  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS--------------VT 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200
           +H     Y  G+E  ++  + G     R+ PP   P  VG
Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 136


>gi|170682353|ref|YP_001743625.1| electron transport complex protein RnfC [Escherichia coli SMS-3-5]
 gi|226735444|sp|B1LEQ7|RNFC_ECOSM RecName: Full=Electron transport complex protein rnfC
 gi|170520071|gb|ACB18249.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli SMS-3-5]
          Length = 676

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|197334471|ref|YP_002155696.1| electron transport complex protein RnfC [Vibrio fischeri MJ11]
 gi|197315961|gb|ACH65408.1| electron transport complex protein RnfC [Vibrio fischeri MJ11]
          Length = 784

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  ++ SG+ G GGAGF T  K     +    +   L++NA E EP    D  +MR   
Sbjct: 137 LIERIRQSGISGMGGAGFPTSRKI----QSGIGKAEMLIINAAECEPYITADDRLMREHA 192

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
             +I+G  I    +      I +        ++L  AV
Sbjct: 193 EEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAV 230


>gi|168177711|ref|ZP_02612375.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum NCTC 2916]
 gi|182670754|gb|EDT82728.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum NCTC 2916]
          Length = 439

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVI 111
           +M  E   ++EG  I
Sbjct: 175 LMLEESDKIVEGLKI 189


>gi|255526899|ref|ZP_05393795.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|255509405|gb|EET85749.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
          Length = 384

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 30/204 (14%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ N  E EP    +  ++   P  +I G   A    GA  A+I ++ +  +  +SL+ 
Sbjct: 127 YIIANCVECEPVLRHNIKLIEENPGIVIRGIECAMKVTGAPKAYIGIKAKNKKAVQSLKN 186

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A        L G N       DI V      Y  GEE AL+ ++ GK  +P  + P  A 
Sbjct: 187 A--------LKGRN-------DIEVSEVKNLYPMGEERALINAIFGKWLEPT-QLPLEAK 230

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
             +    T VN   ++     ++ +  +         N G +      HV +   V    
Sbjct: 231 CVVINGETLVNITRAVEDRKPVIDKDITIAGKL----NSGKE-----SHVFFQIPV---- 277

Query: 259 SITFDELIEKHCGGIRGGWDNLLA 282
                ELIEK CGGI+G +  L+ 
Sbjct: 278 GTPIKELIEK-CGGIKGQYGELVV 300


>gi|226223743|ref|YP_002757850.1| PduS protein [Listeria monocytogenes Clip81459]
 gi|254823604|ref|ZP_05228605.1| PduS protein [Listeria monocytogenes FSL J1-194]
 gi|254852986|ref|ZP_05242334.1| PduS protein [Listeria monocytogenes FSL R2-503]
 gi|300764288|ref|ZP_07074282.1| PduS protein [Listeria monocytogenes FSL N1-017]
 gi|225876205|emb|CAS04914.1| Putative PduS protein [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258606329|gb|EEW18937.1| PduS protein [Listeria monocytogenes FSL R2-503]
 gi|293592827|gb|EFG00588.1| PduS protein [Listeria monocytogenes FSL J1-194]
 gi|300514940|gb|EFK41993.1| PduS protein [Listeria monocytogenes FSL N1-017]
          Length = 451

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 126/320 (39%), Gaps = 67/320 (20%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 3   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E               D  + 
Sbjct: 56  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDASVT 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +H     Y  G+E  ++  + G     R+ PP   P  VG       V+NV ++      
Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG-----CIVSNVSTM------ 145

Query: 221 LRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG-- 276
                 W      +++     K  +++G V  P  ++  +   F+      C    GG  
Sbjct: 146 ------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLLDVPVGTPFEV-----CLAAAGGTN 194

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D  L           L  G M G + D   + E      T+ +IV + +  + K  ++ 
Sbjct: 195 LDEYLF----------LDGGPMMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQT 244

Query: 337 --SVFYKHES-CGQCTPCRE 353
              +F + +S C QC+ C +
Sbjct: 245 VEQIFNETKSACIQCSLCSD 264


>gi|145219605|ref|YP_001130314.1| electron transport complex, RnfABCDGE type, C subunit
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205769|gb|ABP36812.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 441

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ II  +K +G+ G GGAGF + +K S  P    D    +++N  E EP    D  +M 
Sbjct: 121 KESIIERIKDAGIVGMGGAGFPSSVKLSPPPDKTID---TIILNGAECEPFLTADHRVMV 177

Query: 100 HEPHTLIEGC-VIASFAIGAHCAFI 123
                +I+G  +I S   G    FI
Sbjct: 178 EYAEEVIKGLEIITSLFQGKAKPFI 202


>gi|308094766|ref|ZP_07663043.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AN-5034]
 gi|308093502|gb|EFO43197.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AN-5034]
          Length = 772

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  +M+ 
Sbjct: 37  DALIDIIRLAGISGMGGAGFPTAKKI----QSGIARTEILIVNAAECEPYITADDKLMQE 92

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
               LI+G  I    +      I
Sbjct: 93  HAEELIQGIEIVEHILKPKLTII 115


>gi|220935791|ref|YP_002514690.1| electron transport complex, RnfABCDGE type, C subunit
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997101|gb|ACL73703.1| electron transport complex, RnfABCDGE type, C subunit
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 532

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
           N ++ +G+ G GGA F   +K +  P    D    LV+N  E EP    D  +MR     
Sbjct: 135 NRIREAGIVGLGGAAFPAAVKITPRPGQTLD---CLVINGAECEPYITCDDSLMRTHARG 191

Query: 105 LIEGCVIASFAIGAHCAFI 123
           +IEG  I   A+   C  I
Sbjct: 192 VIEGIRILMQALKPSCCLI 210


>gi|153931630|ref|YP_001382770.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936091|ref|YP_001386321.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A str. Hall]
 gi|152927674|gb|ABS33174.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932005|gb|ABS37504.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A str. Hall]
          Length = 439

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVI 111
           +M  E   ++EG  I
Sbjct: 175 LMLEESDKIVEGLKI 189


>gi|283768913|ref|ZP_06341823.1| electron transport complex, RnfABCDGE type, C subunit [Bulleidia
           extructa W1219]
 gi|283104466|gb|EFC05840.1| electron transport complex, RnfABCDGE type, C subunit [Bulleidia
           extructa W1219]
          Length = 438

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 107/259 (41%), Gaps = 43/259 (16%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +++ VK +G+ G GGAGF T +K+  +     D    L++NA E EP    D   M 
Sbjct: 120 REELLDFVKNAGIMGLGGAGFPTYVKYMKV-----DGIDMLIINAVECEPFLTADYKAME 174

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
               +   G V+A + + A    +    E   +++ + A ++E +           G ++
Sbjct: 175 ENMDSFKLG-VLALWKLSAAPKAVVAIKE---DKKEMIAKLEEAFVES--------GVEI 222

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
             +       Y  G E  L   L  KK   RL    P+ +GL      VNN        T
Sbjct: 223 KAV----PDMYPMGYERTLAYQLT-KKNYDRL----PSEIGL-----IVNNAN------T 262

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +  G +  +G    +    K  ++SG  V  P TV   +     EL+ K  GG++ G +
Sbjct: 263 AIALGKALVTGMPITH----KYVTVSGDAVKKPQTVYVPVGTISGELL-KAVGGVKEGIE 317

Query: 279 NLLAVIPGGSSVPCLPAGQ 297
           ++L +  G      +P  Q
Sbjct: 318 DILMINGGPMMGRAIPNNQ 336


>gi|158320804|ref|YP_001513311.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus
           oremlandii OhILAs]
 gi|158141003|gb|ABW19315.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus
           oremlandii OhILAs]
          Length = 442

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 38/233 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I+  +K +G+ G GGA F T +K S  P    D     ++N  E EP    D  +M  
Sbjct: 123 EEILAAIKDAGIVGMGGATFPTHVKLSVPPDKKVDN---FILNGAECEPFLTADHRLMLE 179

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               ++EG +     +     FI +         +++ A ++     ++G ++K      
Sbjct: 180 HSDEIVEGLLAMMKVVNVQNGFIGIEDNKPDAIAAMKKAAEKYPNIKVVGLHTK------ 233

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
                    Y  G E  L+ +   K+  P      PA+ G       VNNV + A V   
Sbjct: 234 ---------YPQGAEKQLIYACT-KREVPSGG--LPADAG-----AIVNNVATAAQVAKT 276

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272
           LR G               ++ +++G  +  P  +   + +   E+IE+ CGG
Sbjct: 277 LRTGMPLID----------RITTVTGSAIANPKNLLMKIGVPIKEVIEQ-CGG 318


>gi|148378371|ref|YP_001252912.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|148287855|emb|CAL81921.1| electron transport complex protein [Clostridium botulinum A str.
           ATCC 3502]
          Length = 439

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVI 111
           +M  E   ++EG  I
Sbjct: 175 LMLEESDKIVEGLKI 189


>gi|77360046|ref|YP_339621.1| electron transport complex protein RnfC [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874957|emb|CAI86178.1| Electron transport complex protein rnfC [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 846

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             D +IN +  +G+ G GGAGF T +K      +      +L++NA E EP    D  +M
Sbjct: 132 SHDELINIIHQAGISGMGGAGFPTYVKADTKQPI-----EFLIINAVECEPYITADDMLM 186

Query: 99  RHEPHTLIEG 108
           R     +++G
Sbjct: 187 REHAKQIVQG 196


>gi|225572996|ref|ZP_03781751.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039647|gb|EEG49893.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM
           10507]
          Length = 653

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 40/236 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I++ V+ +G+ G GGAGF T +K      V       +++N  E EP    D  ++  
Sbjct: 344 DEIVDIVREAGIVGMGGAGFPTSVKLKPAKPV-----DTILLNGCECEPLLTADHRVLLE 398

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               +I G       +GA    I +        E LQA   +               D+D
Sbjct: 399 FADDVIYGLKAIIKTVGAEKGLIVIEDNKPDAIELLQAKTADI-------------SDID 445

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           ++V      Y  G E  L++ + G++  PR     PA+VG       V+N+ +   +   
Sbjct: 446 VVV--AKTKYPQGAEKMLIKRVMGRQ-VPR--GGLPADVG-----CVVSNISTTKAIADA 495

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           ++ G               ++ +++G  +  P      +     ELI+ +CGG+ G
Sbjct: 496 IKTGMPLIE----------RVVTVTGERIKKPGNYIVKIGTNVKELID-YCGGVIG 540


>gi|59711540|ref|YP_204316.1| electron transport complex protein RnfC [Vibrio fischeri ES114]
 gi|59479641|gb|AAW85428.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           (Rnf/Rsx reducing system) [Vibrio fischeri ES114]
          Length = 827

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 43  IINEVKASGLRGRGGAGFSTGMK-WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           +I  ++ SG+ G GGAGF T  K  S + K        L++NA E EP    D  +MR  
Sbjct: 137 LIERIRQSGISGMGGAGFPTSRKIQSGIGKA-----EMLIINAAECEPYITADDRLMREH 191

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
              +I+G  I    +      I +        ++L  AV
Sbjct: 192 AEEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAV 230


>gi|328466674|gb|EGF37805.1| PduS protein [Listeria monocytogenes 1816]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 108/284 (38%), Gaps = 60/284 (21%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL++NA E EP    D  +MR+     I+   +    +GA  A I  +  +  E  +L++
Sbjct: 4   YLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRS 63

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FP 196
           A+ E               D  + +H     Y  G+E  ++  + G     R+ PP   P
Sbjct: 64  AITE--------------LDASVTIHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIP 104

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT--KLFSISGHVNYPCTV 254
             VG       V+NV ++            W      +++     K  +++G V  P  +
Sbjct: 105 LMVG-----CIVSNVSTM------------WNVFHAIQDDAPVVRKQLTVTGAVGEPKLL 147

Query: 255 EESMSITFDELIEKHCGGIRGG--WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
           +  +   F+      C    GG   D  L           L  G M G + D   + E  
Sbjct: 148 DVPVGTPFEV-----CLAAAGGTNLDEYLF----------LDGGPMMGKLNDKSTIAEKV 192

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRL--SVFYKHES-CGQCTPCRE 353
               T+ +IV + +  + K  ++    +F + +S C QC+ C +
Sbjct: 193 VTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSD 236


>gi|188995522|ref|YP_001929774.1| electron transport complex RnfABCDGE type C subunit [Porphyromonas
           gingivalis ATCC 33277]
 gi|188595202|dbj|BAG34177.1| electron transport complex RnfABCDGE type C subunit [Porphyromonas
           gingivalis ATCC 33277]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++ A+G+ G GGA F T +K S  P    ++   L++NA E EP    D  +M    
Sbjct: 126 IVAKISAAGIVGLGGATFPTHVKLSPPP---GNKAEILIINAVECEPYLTSDHVLMLEHG 182

Query: 103 HTLIEGCVIASFAIGAHCAFIYV 125
             ++ G  I   AI  + A I V
Sbjct: 183 EEIMIGVSILMKAIQVNKAVIGV 205


>gi|187732180|ref|YP_001880384.1| electron transport complex protein RnfC [Shigella boydii CDC
           3083-94]
 gi|226735456|sp|B2U2C8|RNFC_SHIB3 RecName: Full=Electron transport complex protein rnfC
 gi|187429172|gb|ACD08446.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           boydii CDC 3083-94]
          Length = 708

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     L+EG  I
Sbjct: 186 MQDCAAQLVEGIRI 199


>gi|323968397|gb|EGB63803.1| electron transporter [Escherichia coli M863]
          Length = 740

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|302338423|ref|YP_003803629.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635608|gb|ADK81035.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta
           smaragdinae DSM 11293]
          Length = 442

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 27  GHWDNVDKILEKGRDW-------IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           G +D + K  E+  DW       ++ +V  +G+ G GGA F + +K+S +PK    +  Y
Sbjct: 105 GAFDRLGK-EERAGDWTQLSAEALMAKVVENGIVGLGGATFPSHVKFS-VPK--GKKAEY 160

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113
            VVN  E EP    D  +M      +IEG  I S
Sbjct: 161 FVVNGVECEPYLTADHRLMLERADQIIEGIRIIS 194


>gi|306813407|ref|ZP_07447597.1| electron transport complex protein RnfC [Escherichia coli NC101]
 gi|305853152|gb|EFM53592.1| electron transport complex protein RnfC [Escherichia coli NC101]
          Length = 740

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|218262923|ref|ZP_03477230.1| hypothetical protein PRABACTJOHN_02910 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223065|gb|EEC95715.1| hypothetical protein PRABACTJOHN_02910 [Parabacteroides johnsonii
           DSM 18315]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++++ A+G+ G GGA F T +K   MP   S +   +++NA E EP    D  +M  + 
Sbjct: 126 IVDKIAAAGIVGLGGATFPTQVK--LMPPPGS-KAEIIIINAVECEPYLTSDHSLMMEKG 182

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             ++ G  +   A+  + A I
Sbjct: 183 EQILVGVTLLMKAVNVNKAII 203


>gi|51246896|ref|YP_066780.1| electron transfer protein (PduS) [Desulfotalea psychrophila LSv54]
 gi|50877933|emb|CAG37773.1| probable electron transfer protein (PduS) [Desulfotalea
           psychrophila LSv54]
          Length = 447

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 47/235 (20%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  +  +G+ G GGAGF   +K+         +   ++ N  E EP    D+ IMR
Sbjct: 5   KDSLLRSILDAGIVGEGGAGFPAHVKY-------DTQVDTVIANGCECEPLLHTDQHIMR 57

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                ++          GA    I ++ ++          + + +A  + G+  +L    
Sbjct: 58  TRAADIVVAMQAIVSVTGATRGVIGIKSKYTE--------IAKIFADCIEGTGLELAQLD 109

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVV 217
           +         Y  G+E AL+  + GK       PP   P +VG       V NV ++A V
Sbjct: 110 NF--------YPAGDEQALVYEVTGKT-----IPPLGLPKDVG-----AVVANVGTLAEV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
              ++     +           K+ +++G V  P  +   +     E +  HCGG
Sbjct: 152 AAAIKGTPLTH-----------KIVTVTGDVGSPAVIRVPLGTKMSECL-AHCGG 194


>gi|331003602|ref|ZP_08327098.1| hypothetical protein HMPREF0491_01960 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412322|gb|EGG91714.1| hypothetical protein HMPREF0491_01960 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 610

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
            D+ +A   L+     ++CG+C PCR G G + +++E ++ G      + L+ + + +I 
Sbjct: 37  VDMSRAFLELA---HAQTCGKCVPCRIGLGQLEKLIENVLDGKGSMASLKLMEKTALSIM 93

Query: 387 GRTICALG-DAAAWPIQGLI 405
               CA+G +AA    +G+I
Sbjct: 94  ESADCAIGYEAANMVYKGII 113


>gi|315650048|ref|ZP_07903127.1| pyridine nucleotide-disulfide oxidoreductase [Eubacterium saburreum
           DSM 3986]
 gi|315487677|gb|EFU77981.1| pyridine nucleotide-disulfide oxidoreductase [Eubacterium saburreum
           DSM 3986]
          Length = 595

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
            D+ +A   L+     ++CG+C PCR G G + +++E ++ G      + L+ + + +I 
Sbjct: 22  VDMSRAFLELA---HAQTCGKCVPCRIGLGQLEKLIENVLDGKGSMASLKLMEKTALSIM 78

Query: 387 GRTICALG-DAAAWPIQGLI 405
               CA+G +AA    +G+I
Sbjct: 79  ESADCAIGYEAANMVYKGII 98


>gi|313609317|gb|EFR84954.1| PduS type ferredoxin, putative [Listeria monocytogenes FSL F2-208]
          Length = 427

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL++NA E EP    D  +MR+     I+   +    +GA  A I  +  +  E  +L++
Sbjct: 8   YLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRS 67

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FP 196
           A+ E               D  + +H     Y  G+E  ++  + G     R+ PP   P
Sbjct: 68  AITE--------------LDASVTIHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIP 108

Query: 197 ANVG 200
             VG
Sbjct: 109 LMVG 112


>gi|284921553|emb|CBG34625.1| electron transport complex protein [Escherichia coli 042]
          Length = 741

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|323978231|gb|EGB73317.1| electron transporter [Escherichia coli TW10509]
          Length = 740

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|218705130|ref|YP_002412649.1| electron transport complex protein RnfC [Escherichia coli UMN026]
 gi|300901564|ref|ZP_07119633.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 198-1]
 gi|226735442|sp|B7NB83|RNFC_ECOLU RecName: Full=Electron transport complex protein rnfC
 gi|218432227|emb|CAR13117.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli UMN026]
 gi|300355031|gb|EFJ70901.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 198-1]
          Length = 740

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|217964789|ref|YP_002350467.1| PduS protein [Listeria monocytogenes HCC23]
 gi|217334059|gb|ACK39853.1| PduS protein [Listeria monocytogenes HCC23]
 gi|307570650|emb|CAR83829.1| propanediol utilization protein (electron transport protein)
           [Listeria monocytogenes L99]
          Length = 451

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 28/160 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +MR+  
Sbjct: 3   ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              I+   +    +GA  A I  +  +  E  +L++A+ E               D  + 
Sbjct: 56  VETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITE--------------LDATVT 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVG 200
           +H     Y  G+E  ++  + G     R+ PP   P  VG
Sbjct: 102 IHEMDNVYPTGDEQVMVFEVTG-----RVVPPSGIPLMVG 136


>gi|34540141|ref|NP_904620.1| RnfABCDGE type electron transport complex subunit C [Porphyromonas
           gingivalis W83]
 gi|34396453|gb|AAQ65519.1| electron transport complex, RnfABCDGE type, C subunit
           [Porphyromonas gingivalis W83]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+ ++ A+G+ G GGA F T +K S  P    ++   L++NA E EP    D  +M    
Sbjct: 126 IVAKISAAGIVGLGGATFPTHVKLSPPP---GNKAEILIINAVECEPYLTSDHVLMLEHG 182

Query: 103 HTLIEGCVIASFAIGAHCAFIYV 125
             ++ G  I   AI  + A I V
Sbjct: 183 EEIMIGVSILMKAIQVNKAVIGV 205


>gi|239617294|ref|YP_002940616.1| electron transport complex, RnfABCDGE type, C subunit [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506125|gb|ACR79612.1| electron transport complex, RnfABCDGE type, C subunit [Kosmotoga
           olearia TBF 19.5.1]
          Length = 440

 Score = 40.0 bits (92), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  RD II  +K +G+ G GGA F T +K +  PK    +   L++N  E EP    D  
Sbjct: 119 EFSRDEIIERIKEAGIVGLGGATFPTHVKLN-PPK--DKKIDVLIINGAECEPYLTVDYR 175

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M      +I G      A+G   A I
Sbjct: 176 LMLEMSEKIIRGIRALMKALGVEKAII 202


>gi|239623488|ref|ZP_04666519.1| electron transport complex [Clostridiales bacterium 1_7_47_FAA]
 gi|239521519|gb|EEQ61385.1| electron transport complex [Clostridiales bacterium 1_7_47FAA]
          Length = 441

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I + VK +G+ G GGAGF T +K +  PK   +   Y++VN  E EP    D  +M 
Sbjct: 122 KEEIRSIVKEAGIVGLGGAGFPTHVKLT--PKD-ENAIEYILVNGAECEPYLTSDYRMML 178

Query: 100 HEPHTLIEG 108
            EP  ++ G
Sbjct: 179 EEPEKIVGG 187


>gi|322229364|dbj|BAJ72752.1| unnamed protein product [Lactococcus garvieae]
          Length = 447

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+CTPCREG   +  +++++++  A + ++  + + ++ +     CA+G DA A  +
Sbjct: 81  QTCGKCTPCREGIPRIKALLDKVLRYEADRSDVAEIAKRARLLRDTADCAVGYDAGAQVL 140

Query: 402 QGL 404
           +GL
Sbjct: 141 KGL 143


>gi|251792842|ref|YP_003007568.1| electron transport complex protein RnfC [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534235|gb|ACS97481.1| electron transport complex protein RnfC [Aggregatibacter
           aphrophilus NJ8700]
          Length = 843

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           +D  L K  + ++ ++  +G+ G GGA F T  K     K        L++N  E EP  
Sbjct: 125 MDDFLTKTPEQLVEKIYQAGIAGLGGAVFPTAAKIHSAEKQVK----LLIINGAECEPYI 180

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           TC DR +MR     +IEG  I  + +      I V    +    +L+ A+
Sbjct: 181 TCDDR-LMRDYADEIIEGVRIIRYILRPEKVVIAVEDNKLEAVSALERAL 229


>gi|218699803|ref|YP_002407432.1| electron transport complex protein RnfC [Escherichia coli IAI39]
 gi|226735439|sp|B7NU04|RNFC_ECO7I RecName: Full=Electron transport complex protein rnfC
 gi|218369789|emb|CAR17560.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli IAI39]
          Length = 740

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K         D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHKFGVAGLGGAGFPTGVKLQG----GGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|154495029|ref|ZP_02034034.1| hypothetical protein PARMER_04075 [Parabacteroides merdae ATCC
           43184]
 gi|154085579|gb|EDN84624.1| hypothetical protein PARMER_04075 [Parabacteroides merdae ATCC
           43184]
          Length = 443

 Score = 40.0 bits (92), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++++ A+G+ G GGA F T +K   MP   S +   +++NA E EP    D  +M  + 
Sbjct: 126 IVDKIAAAGIVGLGGATFPTQVK--LMPPPGS-KAEIIIINAVECEPYLTSDHSLMMEKG 182

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             ++ G  +   A+  + A I
Sbjct: 183 EQILVGVTLLMKAVNVNKAVI 203


>gi|238916166|ref|YP_002929683.1| glutamate synthase (NADPH) small chain [Eubacterium eligens ATCC
           27750]
 gi|238871526|gb|ACR71236.1| glutamate synthase (NADPH) small chain [Eubacterium eligens ATCC
           27750]
          Length = 615

 Score = 40.0 bits (92), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP-- 400
           +SCG+C PCR G   + R+ + ++ G A +  +D++   ++ I     CA+G  AA    
Sbjct: 54  QSCGKCVPCRVGLRQLARLFDDVLDGNATEETLDVIRLTAEGIYYSADCAIGYEAAKLVL 113

Query: 401 --IQGLIKNFRPLIE 413
             I G   +FR  +E
Sbjct: 114 KCIDGCEDDFRSHME 128


>gi|327252745|gb|EGE64399.1| electron transport complex protein rnfC [Escherichia coli STEC_7v]
          Length = 633

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K         D+   L++N
Sbjct: 12  IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIIN 64

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 65  AAECEPYITADDRLMQDCAAQVVEGIRI 92


>gi|154482955|ref|ZP_02025403.1| hypothetical protein EUBVEN_00653 [Eubacterium ventriosum ATCC
           27560]
 gi|149736239|gb|EDM52125.1| hypothetical protein EUBVEN_00653 [Eubacterium ventriosum ATCC
           27560]
          Length = 437

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +++I   VK  G+ G GGA F T +K +  PK   +   Y++VNA E EP    D   + 
Sbjct: 119 KEYIREAVKDCGVVGLGGACFPTNVKLT--PKD-DNAIDYVIVNAAECEPYITSDYRRLV 175

Query: 100 HEPHTLIEGCVI 111
            +P  +IEG  I
Sbjct: 176 EQPQEVIEGLKI 187


>gi|256826477|ref|YP_003150436.1| putative glutamate synthase (NADPH) small subunit [Cryptobacterium
           curtum DSM 15641]
 gi|256582620|gb|ACU93754.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
           [Cryptobacterium curtum DSM 15641]
          Length = 612

 Score = 40.0 bits (92), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 7/78 (8%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR+G   + R+++++V   A    +  +  ++++I   + CA+G  A    Q
Sbjct: 50  QTCGKCVPCRDGIPQLARLLDQVVTCHATTETLIQIRALAQSIRDTSDCAIGYQAG---Q 106

Query: 403 GLIKNFRPLIEERIDQYH 420
           G++      +EE  D+Y 
Sbjct: 107 GVLDG----LEEFADEYE 120


>gi|213861431|ref|ZP_03385901.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 82

 Score = 40.0 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL   SG V  P   E     T  E++E + GG+R G     A  PGG+    L    
Sbjct: 2   GTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDFLTEAH 60

Query: 298 MRGAIMDYDGLKEMGSGLGTA 318
           +    M+++ + + GS LGTA
Sbjct: 61  L-DLPMEFESIGKAGSRLGTA 80


>gi|303257905|ref|ZP_07343914.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderiales
           bacterium 1_1_47]
 gi|331000430|ref|ZP_08324105.1| pyridine nucleotide-disulfide oxidoreductase [Parasutterella
           excrementihominis YIT 11859]
 gi|302859248|gb|EFL82330.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderiales
           bacterium 1_1_47]
 gi|329571762|gb|EGG53442.1| pyridine nucleotide-disulfide oxidoreductase [Parasutterella
           excrementihominis YIT 11859]
          Length = 661

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
           +V     +++ A+ +     K  SCG+CTPCR G+  + + +E+ ++G     E   L +
Sbjct: 51  LVFHPHANLLFAMNKYYSTVKDNSCGKCTPCRSGSIIISQALEKALRGDPINWEN--LLD 108

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +++ +   + C +G  +   +   IK F
Sbjct: 109 IARMMRNTSFCGVGQTSPVALIEAIKAF 136


>gi|296102657|ref|YP_003612803.1| electron transport complex protein RnfC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057116|gb|ADF61854.1| electron transport complex protein RnfC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 607

 Score = 39.7 bits (91), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I+ +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIDRIHQFGVAGLGGAGFPTGVKL----RGGGDKIQTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVIASFAIGAHCAFI 123
                ++EG  I +  +      I
Sbjct: 188 DCAAQVVEGIRILAHVLQPREVLI 211


>gi|227874303|ref|ZP_03992490.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Oribacterium sinus
           F0268]
 gi|227839854|gb|EEJ50297.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Oribacterium sinus
           F0268]
          Length = 457

 Score = 39.7 bits (91), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ I++ V+ +G+ G GGAGF T +K S  PK   D+    +VN  E EP    D   M 
Sbjct: 131 REEIVSIVRDAGIVGLGGAGFPTFVKLS--PKEI-DKIDLFLVNGAECEPYLTSDYRDMM 187

Query: 100 HEPHTLIEG 108
             P  LI G
Sbjct: 188 EMPEKLIGG 196


>gi|261253563|ref|ZP_05946136.1| electron transport complex protein RnfC [Vibrio orientalis CIP
           102891]
 gi|260936954|gb|EEX92943.1| electron transport complex protein RnfC [Vibrio orientalis CIP
           102891]
          Length = 881

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I +++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 DELIEKIRLAGVSGMGGAGFPTAKKI----QSGLARTEILIINAAECEPYITADDMLMRE 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
               +I+G  +    +      I +        ++LQ A +
Sbjct: 190 HADEIIQGIEVVEHILKPKLTVIGIEDNKPEAVKALQHAAE 230


>gi|51947505|gb|AAU14237.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 319

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           D V K ++ G   +I EV  + L GRGGAGF TG KW
Sbjct: 269 DAVSKAVKMGPTQVIKEVTEAKLLGRGGAGFMTGRKW 305


>gi|254509395|ref|ZP_05121478.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio
           parahaemolyticus 16]
 gi|219547669|gb|EED24711.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio
           parahaemolyticus 16]
          Length = 840

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 28/186 (15%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           V+   +   D +I  ++ +G+ G GGAGF T  K     +    R   L+VNA E EP  
Sbjct: 125 VEDYRQSSPDELIEIIRQAGISGMGGAGFPTAKKI----QSGLARTEILIVNAAECEPYI 180

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M+     +I+G  I    +      I +         +LQ A            
Sbjct: 181 TADDMLMQEHADEIIQGIEIVEHILKPKLTIIGIEDNKPNAVAALQHA------------ 228

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                 + DI++      Y  G E  L++ L  K+         PA++GL      V NV
Sbjct: 229 ----ALNKDIVIRVIPTKYPSGGEKQLIKILTNKEVPANG---IPADIGLL-----VQNV 276

Query: 212 ESIAVV 217
            S+  +
Sbjct: 277 GSLQAI 282


>gi|218708972|ref|YP_002416593.1| hypothetical protein VS_0976 [Vibrio splendidus LGP32]
 gi|218321991|emb|CAV18003.1| putative membrane protein [Vibrio splendidus LGP32]
          Length = 276

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 20/155 (12%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           V+    K  D +++ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP  
Sbjct: 137 VEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----QSGLGRTDILIVNAAECEPYI 192

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +++     +++G  +    +      I +        ++L+ A            
Sbjct: 193 TSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIA------------ 240

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
                 D DI++      Y  G E  L++ L  K+
Sbjct: 241 ----AKDKDIVIRVIPTKYPSGGEKQLIKILTNKE 271


>gi|257452980|ref|ZP_05618279.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           3_1_5R]
 gi|317059520|ref|ZP_07924005.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp.
           3_1_5R]
 gi|313685196|gb|EFS22031.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp.
           3_1_5R]
          Length = 436

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVK-------ASGLRGRGG 57
           ++R+F  L G     + ++  +  W  + KI     +W   EVK         G+ G GG
Sbjct: 84  EERVFP-LMGTCKSIVIENDGQETWAELSKI----ENWETAEVKDLLAMIREKGIVGIGG 138

Query: 58  AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           A F T +K +        +   L++N  E EP    D  +M   P ++IEG  I    +G
Sbjct: 139 ASFPTHVKLN---PPADTKIDTLLLNGAECEPYLNSDNRLMLENPSSIIEGVKIIKKILG 195

Query: 118 AHCAFI 123
              A I
Sbjct: 196 VSTAII 201


>gi|167038752|ref|YP_001661737.1| RnfABCDGE type electron transport complex subunit C
           [Thermoanaerobacter sp. X514]
 gi|300913662|ref|ZP_07130979.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter sp. X561]
 gi|307723323|ref|YP_003903074.1| RnfABCDGE type electron transport complex subunit C
           [Thermoanaerobacter sp. X513]
 gi|166852992|gb|ABY91401.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter sp. X514]
 gi|300890347|gb|EFK85492.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter sp. X561]
 gi|307580384|gb|ADN53783.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter sp. X513]
          Length = 443

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 89/233 (38%), Gaps = 42/233 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II  ++ +G+ G GGAGF T +K S        +   ++VN  E EP    D  +M   P
Sbjct: 127 IIEIIREAGITGMGGAGFPTHVKLS---PPSDKKIDTILVNGAECEPYLTTDHRLMVEYP 183

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++ G      A+G     I                V++     +L        + +I 
Sbjct: 184 EKIVFGLKAIMKAVGVERGII---------------GVEKNKPDAILALREASKDEKNIQ 228

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTI 220
           +      Y  G+E  L+ ++ G     R+ P    P +VG+      VN   + AV   I
Sbjct: 229 IATLKVKYPQGDEKRLINAILG-----RIVPSGGLPMDVGVI----VVNAATTKAVADAI 279

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272
           L  G   Y           ++ +I+GH +  P  +   +     +LIE  CGG
Sbjct: 280 L-EGKPLYE----------RVTTITGHGIKQPKNLLVKIGTPLKDLIE-QCGG 320


>gi|260437062|ref|ZP_05790878.1| Na(+)-translocating NADH-quinone reductase, A subunit [Butyrivibrio
           crossotus DSM 2876]
 gi|292810371|gb|EFF69576.1| Na(+)-translocating NADH-quinone reductase, A subunit [Butyrivibrio
           crossotus DSM 2876]
          Length = 439

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  +D II  ++ +G+ G GGAGF T +K S  PK  +D    ++VN  E EP    D  
Sbjct: 118 ELSKDEIIKIIEEAGIVGMGGAGFPTNVKLS--PK-NADIIDSIIVNGAECEPYLTSDYR 174

Query: 97  IMRHEPHTLIEGCVI 111
            M  +   L++G  I
Sbjct: 175 RMVEQTDKLVKGLKI 189


>gi|301026785|ref|ZP_07190189.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 69-1]
 gi|300395323|gb|EFJ78861.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 69-1]
          Length = 804

 Score = 39.7 bits (91), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  WD+      + R+ +I  +   G+ G GGAGF TG+K         D+   L++N
Sbjct: 119 IPRDGWDDYRS---RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|257466640|ref|ZP_05630951.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917794|ref|ZP_07914034.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691669|gb|EFS28504.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 436

 Score = 39.7 bits (91), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVK-------ASGLRGRGG 57
           ++R+F  L G     + ++  +  W  + KI     +W   EVK         G+ G GG
Sbjct: 84  EERVFP-LMGTCKSIVIENDGQETWAELSKI----ENWETAEVKDLLAMIREKGIVGIGG 138

Query: 58  AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           A F T +K +        +   L++N  E EP    D  +M   P ++IEG  I    +G
Sbjct: 139 ASFPTHVKLN---PPADTKIDTLLLNGAECEPYLNSDNRLMLENPSSIIEGVKIIKKILG 195

Query: 118 AHCAFI 123
              A I
Sbjct: 196 VSTAII 201


>gi|325849927|ref|ZP_08170966.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325479951|gb|EGC83034.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 438

 Score = 39.7 bits (91), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I+  +K +GL G GGA F   +K+S  P    D    +++N  E EP    D  I++
Sbjct: 122 KEKIVEAMKENGLVGMGGAAFPAHIKYS--PNKAVDT---VIINGAECEPYVTCDDYILK 176

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
            +P  +++   +   A+ A    I +        E ++ A+
Sbjct: 177 TKPEIIVDALELLVKAVDAKKGIIAIEDNKQESIEKVRKAI 217


>gi|89092705|ref|ZP_01165658.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92]
 gi|89083217|gb|EAR62436.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92]
          Length = 1047

 Score = 39.7 bits (91), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 20/163 (12%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            +  +++ ++  G+ G GGAGF T +K         +    LV+NA E EP    D  +M
Sbjct: 123 SKQELLDFIRFRGISGMGGAGFPTDVKLHLGDDHIVN---TLVINAMECEPYITADDMLM 179

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     +++G  I +  +  H   I       +   +++ AV E          SKL  D
Sbjct: 180 REHADQVVKGIEIIAHLLKPHHVMIGTEDNKPQAIRAMEQAVAE----------SKL--D 227

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
           +DIIV      Y  G E  L++ L G +  P  K   PA+VG+
Sbjct: 228 IDIIV--VPTVYPSGGEKQLIKLLTGVEV-PSGK--IPADVGI 265


>gi|302389269|ref|YP_003825090.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199897|gb|ADL07467.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 438

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   D I N ++ +G+ G GGAGF T +K S       D    ++VN  E EP    D  
Sbjct: 118 EMTPDEIKNLIREAGIVGMGGAGFPTQVKLSPPAGKTID---TIIVNGAECEPYLTADHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M   P  ++ G      A G   A+I
Sbjct: 175 LMVERPDDVVLGLRAIMKATGVEKAYI 201


>gi|218133996|ref|ZP_03462800.1| hypothetical protein BACPEC_01886 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991371|gb|EEC57377.1| hypothetical protein BACPEC_01886 [Bacteroides pectinophilus ATCC
           43243]
          Length = 611

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR G G +   + ++++G A    +  +  ++K I     CA+G  AA  + 
Sbjct: 50  QTCGKCVPCRVGLGQLADYLNQVLEGEATMETLGEIERLAKVISNSADCAIGYEAANMVL 109

Query: 403 GLIKNFR 409
             ++ FR
Sbjct: 110 RGLEGFR 116


>gi|257462466|ref|ZP_05626878.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. D12]
 gi|317060123|ref|ZP_07924608.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12]
 gi|313685799|gb|EFS22634.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12]
          Length = 436

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKA-------SGLRGRGG 57
           ++R+F  L G     + ++  +  W  + KI     +W   EVK         G+ G GG
Sbjct: 84  EERVFP-LMGTCKSIVIENDGQETWAELSKI----ENWETAEVKELLAMIREKGIVGIGG 138

Query: 58  AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           A F T +K +        +   L++N  E EP    D  +M   P ++IEG  I    +G
Sbjct: 139 ASFPTHVKLN---PPADTKIDTLLLNGAECEPYLNSDNRLMLENPSSIIEGVKIIKKILG 195

Query: 118 AHCAFI 123
              A I
Sbjct: 196 VSTAVI 201


>gi|261856372|ref|YP_003263655.1| electron transport complex, RnfABCDGE type, C subunit
           [Halothiobacillus neapolitanus c2]
 gi|261836841|gb|ACX96608.1| electron transport complex, RnfABCDGE type, C subunit
           [Halothiobacillus neapolitanus c2]
          Length = 567

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMRHEPHTL 105
           ++ +G+ G GGA F T  K +            L++N  E EP  TC DR +MR +P  +
Sbjct: 140 LREAGIVGLGGAVFPTASKMATGQAAV----RTLILNGAECEPYITCDDR-LMREQPAEI 194

Query: 106 IEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           + G  IA   IGA    I +         +LQ+A
Sbjct: 195 LRGAAIAMHMIGAERCLIGIEDNKPEALAALQSA 228


>gi|210610169|ref|ZP_03288286.1| hypothetical protein CLONEX_00472 [Clostridium nexile DSM 1787]
 gi|210152599|gb|EEA83605.1| hypothetical protein CLONEX_00472 [Clostridium nexile DSM 1787]
          Length = 202

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI- 401
           ++CG+C PCR G G +   ++ ++ G A    +D++ + + +I     CA+G  AA  + 
Sbjct: 92  QTCGKCVPCRIGLGQLNGFIKDVLDGNATMETLDIMEQTALSIMESADCAIGYEAAHTVY 151

Query: 402 QGLI 405
           +GLI
Sbjct: 152 KGLI 155


>gi|300921314|ref|ZP_07137681.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 115-1]
 gi|300411733|gb|EFJ95043.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 115-1]
          Length = 576

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|300959104|ref|ZP_07171191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 175-1]
 gi|300314283|gb|EFJ64067.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 175-1]
          Length = 468

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 23  RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 78

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 79  MQDCAAQVVEGIRI 92


>gi|212695714|ref|ZP_03303842.1| hypothetical protein ANHYDRO_00234 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677387|gb|EEB36994.1| hypothetical protein ANHYDRO_00234 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 443

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 5/101 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++ I+  +K +GL G GGA F   +K+S  P    D    +++N  E EP    D  I++
Sbjct: 127 KEKIVEAMKENGLVGMGGAAFPAHIKYS--PNKAVDT---VIINGAECEPYVTCDDYILK 181

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
            +P  +++   +   A+ A    I +        E ++ A+
Sbjct: 182 TKPEIIVDALELLVKAVDAKKGIIAIEDNKQEAIEKVRKAI 222


>gi|262165247|ref|ZP_06032984.1| electron transport complex protein RnfC [Vibrio mimicus VM223]
 gi|262024963|gb|EEY43631.1| electron transport complex protein RnfC [Vibrio mimicus VM223]
          Length = 825

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR   + +I
Sbjct: 140 IRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQHANEII 195

Query: 107 EGCVIASFAIGAHCAFI 123
           +G  I    +      I
Sbjct: 196 QGIEIVEHILKPKLTII 212


>gi|301050123|ref|ZP_07197027.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 185-1]
 gi|300298145|gb|EFJ54530.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 185-1]
          Length = 579

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|301029281|ref|ZP_07192385.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 196-1]
 gi|299877809|gb|EFI86020.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 196-1]
          Length = 520

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 74  RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 129

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 130 MQDCAAQVVEGIRI 143


>gi|315297365|gb|EFU56645.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 16-3]
          Length = 580

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|301329557|ref|ZP_07222340.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 78-1]
 gi|300844326|gb|EFK72086.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 78-1]
          Length = 576

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|300931505|ref|ZP_07146822.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 187-1]
 gi|300460699|gb|EFK24192.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 187-1]
          Length = 553

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 104 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 159

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 160 MQDCAAQVVEGIRI 173


>gi|300927478|ref|ZP_07143191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 182-1]
 gi|300416582|gb|EFJ99892.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 182-1]
          Length = 575

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|300990137|ref|ZP_07179144.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 200-1]
 gi|300305772|gb|EFJ60292.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 200-1]
          Length = 571

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|331653024|ref|ZP_08354029.1| electron transport complex protein RnfC [Escherichia coli M718]
 gi|331049122|gb|EGI21194.1| electron transport complex protein RnfC [Escherichia coli M718]
          Length = 596

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|312275027|gb|ADQ57822.1| hypothetical protein S500 [Hirudinaria manillensis]
          Length = 160

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II  +   G+ G GGA F T +K S  P     +   L++NA E EP    D  +M  + 
Sbjct: 50  IIQRISDCGIVGLGGATFPTHVKLSPPP---GSKAEVLIINAVECEPYLTSDHILMMEKS 106

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             ++ G  I   AI  + A I
Sbjct: 107 EEILVGVAILMKAIEVNRAII 127


>gi|300950446|ref|ZP_07164365.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 116-1]
 gi|300450223|gb|EFK13843.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 116-1]
          Length = 496

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 53  RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 108

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 109 MQDCAAQVVEGIRI 122


>gi|300988844|ref|ZP_07178839.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 45-1]
 gi|300407382|gb|EFJ90920.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 45-1]
          Length = 570

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|300907218|ref|ZP_07124880.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 84-1]
 gi|300401022|gb|EFJ84560.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 84-1]
          Length = 573

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|256022710|ref|ZP_05436575.1| electron transport complex protein RnfC [Escherichia sp. 4_1_40B]
          Length = 597

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|256018178|ref|ZP_05432043.1| electron transport complex protein RnfC [Shigella sp. D9]
 gi|332279226|ref|ZP_08391639.1| electron transport complex protein rnfC [Shigella sp. D9]
 gi|332101578|gb|EGJ04924.1| electron transport complex protein rnfC [Shigella sp. D9]
          Length = 565

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|324014761|gb|EGB83980.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 60-1]
          Length = 574

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|315291967|gb|EFU51319.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 153-1]
          Length = 569

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|218282321|ref|ZP_03488611.1| hypothetical protein EUBIFOR_01193 [Eubacterium biforme DSM 3989]
 gi|218216694|gb|EEC90232.1| hypothetical protein EUBIFOR_01193 [Eubacterium biforme DSM 3989]
          Length = 436

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+  ++ VK +G+ G GGAGF T +K+     +  D   Y+++NA E EP    D   + 
Sbjct: 127 REECVDFVKNAGIVGLGGAGFPTYVKY-----MKPDGVDYVLINAVECEPYITADYRSVM 181

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
            +   L+ G  I      A   +I ++       E +++A+ +
Sbjct: 182 DDAQDLVTGAKIMKKMAEAKTVYICIKESHPDLIEKVKSALQD 224


>gi|293414946|ref|ZP_06657589.1| electron transport complex protein RnfC [Escherichia coli B185]
 gi|291432594|gb|EFF05573.1| electron transport complex protein RnfC [Escherichia coli B185]
          Length = 611

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|315126996|ref|YP_004068999.1| electron transport complex protein RnfC [Pseudoalteromonas sp.
           SM9913]
 gi|315015510|gb|ADT68848.1| electron transport complex protein RnfC [Pseudoalteromonas sp.
           SM9913]
          Length = 679

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +++ +  +G+ G GGAGF T +K      +      +L+VNA E EP    D  +MR 
Sbjct: 134 DELVDVIHNAGISGMGGAGFPTYVKADIKQPI-----EFLIVNAVECEPYITADDTLMRE 188

Query: 101 EPHTLIEG 108
               +++G
Sbjct: 189 HAAEIVKG 196


>gi|331673198|ref|ZP_08373966.1| electron transport complex protein RnfC [Escherichia coli TA280]
 gi|331069396|gb|EGI40783.1| electron transport complex protein RnfC [Escherichia coli TA280]
          Length = 608

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|262037146|ref|ZP_06010638.1| electron transport complex protein RnfC [Leptotrichia goodfellowii
           F0264]
 gi|261748834|gb|EEY36181.1| electron transport complex protein RnfC [Leptotrichia goodfellowii
           F0264]
          Length = 441

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 28/197 (14%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
           S++M R   +++    E  +  I++ +K SG+ G GGA F T +K+    KV        
Sbjct: 106 SENMERRAMESLS---EYTKREILDVIKESGIVGEGGAQFPTYVKYDIGDKVVDT----F 158

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           ++N  E EP    D  IM        +G  I    +      I +      E   L    
Sbjct: 159 ILNGSECEPYLTADYTIMNEWTEQFFDGIKIVEKLLNPKKTVIGIE----EENRELVERF 214

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
            E        S  K   +++I V     AY  G E  L++++ GK+ +   K   P N G
Sbjct: 215 SEV-------SRKKNMTNIEICVL--PTAYPQGSELQLIKTITGKEIK---KGNLPVNYG 262

Query: 201 LYGCPTTVNNVESIAVV 217
           +      V+NV ++  V
Sbjct: 263 V-----VVSNVGTVKSV 274


>gi|307310800|ref|ZP_07590446.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli W]
 gi|306908978|gb|EFN39474.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli W]
          Length = 608

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|307243115|ref|ZP_07525289.1| electron transport complex, RnfABCDGE type, C subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493475|gb|EFM65454.1| electron transport complex, RnfABCDGE type, C subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 447

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           I +  ++ I+  VK +G+ G GGA F   +K S  P     +  Y+++N  E EP    D
Sbjct: 116 IADLSKEEIVGIVKEAGIVGMGGATFPNHVKISPPP---DSKAEYVILNGAECEPYLTAD 172

Query: 95  RDIMRHEPHTLIEG 108
             +M   P  ++ G
Sbjct: 173 DRLMVENPEDVVYG 186


>gi|331677494|ref|ZP_08378169.1| electron transport complex protein RnfC [Escherichia coli H591]
 gi|331073954|gb|EGI45274.1| electron transport complex protein RnfC [Escherichia coli H591]
          Length = 544

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 53  RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 108

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 109 MQDCAAQVVEGIRI 122


>gi|323973845|gb|EGB69018.1| electron transporter [Escherichia coli TA007]
          Length = 623

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|323940294|gb|EGB36486.1| electron transporter [Escherichia coli E482]
          Length = 631

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|331683136|ref|ZP_08383737.1| electron transport complex protein RnfC [Escherichia coli H299]
 gi|331079351|gb|EGI50548.1| electron transport complex protein RnfC [Escherichia coli H299]
          Length = 624

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|331668306|ref|ZP_08369154.1| electron transport complex protein RnfC [Escherichia coli TA271]
 gi|331063500|gb|EGI35411.1| electron transport complex protein RnfC [Escherichia coli TA271]
          Length = 620

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|331657598|ref|ZP_08358560.1| electron transport complex protein RnfC [Escherichia coli TA206]
 gi|331055846|gb|EGI27855.1| electron transport complex protein RnfC [Escherichia coli TA206]
          Length = 622

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|258627117|ref|ZP_05721913.1| RnfC-related protein [Vibrio mimicus VM603]
 gi|258580635|gb|EEW05588.1| RnfC-related protein [Vibrio mimicus VM603]
          Length = 820

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
             + +I+G  I    +      I
Sbjct: 190 HANEIIQGIEIVEHILKPKLTII 212


>gi|37679374|ref|NP_933983.1| electron transport complex protein RnfC [Vibrio vulnificus YJ016]
 gi|37198117|dbj|BAC93954.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Vibrio
           vulnificus YJ016]
          Length = 885

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 20/150 (13%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D++++ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QQSSDYLLDVIRMAGISGMGGAGFPTAKKI----QSGLGRTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +++     +++G  I    +      I +        ++L++A                 
Sbjct: 186 LLQEHAEEVLQGIEIVEHILQPKLTIIGIEDNKPEAIKALESA----------------A 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKK 186
            + DI++      Y  G E  L++ L  K+
Sbjct: 230 QNRDIVIRVIPTKYPSGGEKQLIKVLTNKE 259


>gi|227885955|ref|ZP_04003760.1| electron transport complex protein RnfC [Escherichia coli 83972]
 gi|227837047|gb|EEJ47513.1| electron transport complex protein RnfC [Escherichia coli 83972]
          Length = 616

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|323169935|gb|EFZ55591.1| electron transport complex protein rnfC [Escherichia coli LT-68]
          Length = 684

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 106 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 161

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 162 MQDCAAQIVEGIRI 175


>gi|307138283|ref|ZP_07497639.1| electron transport complex protein RnfC [Escherichia coli H736]
 gi|331642222|ref|ZP_08343357.1| electron transport complex protein RnfC [Escherichia coli H736]
 gi|331039020|gb|EGI11240.1| electron transport complex protein RnfC [Escherichia coli H736]
          Length = 621

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|262171980|ref|ZP_06039658.1| electron transport complex protein RnfC [Vibrio mimicus MB-451]
 gi|261893056|gb|EEY39042.1| electron transport complex protein RnfC [Vibrio mimicus MB-451]
          Length = 867

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR   + +I
Sbjct: 140 IRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQHANEII 195

Query: 107 EGCVIASFAIGAHCAFI 123
           +G  I    +      I
Sbjct: 196 QGIEIVEHILKPKLTII 212


>gi|325299904|ref|YP_004259821.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324319457|gb|ADY37348.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 445

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I+ ++K +G+ G GGA F T +K +  P     +   +++NA E EP    D  +M  
Sbjct: 123 EEIVTKIKNAGVVGMGGACFPTHVKLTPPPGC---KAECVIINAVECEPYLTADHRLMLE 179

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
           +P  ++ G  I   A   + A+I
Sbjct: 180 KPDEILVGVSILMKAAKVNQAYI 202


>gi|300821500|ref|ZP_07101647.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 119-7]
 gi|300526003|gb|EFK47072.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 119-7]
          Length = 640

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|257065213|ref|YP_003144885.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
           [Slackia heliotrinireducens DSM 20476]
 gi|256792866|gb|ACV23536.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
           [Slackia heliotrinireducens DSM 20476]
          Length = 612

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR+G   +  +M  ++   A +  +D + ++++ I+  + CA+G +A    +
Sbjct: 50  QTCGKCVPCRDGIPQLAALMRSVLNCEADECTLDTMRQLAQMIKDTSDCAIGYEAGKMAL 109

Query: 402 QGL 404
           +GL
Sbjct: 110 EGL 112


>gi|324119385|gb|EGC13272.1| electron transporter [Escherichia coli E1167]
          Length = 655

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|333005861|gb|EGK25377.1| electron transport complex protein rnfC [Shigella flexneri K-272]
          Length = 620

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K         D+   L++NA E EP    D  +
Sbjct: 106 RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRL 161

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 162 MQDCAAQVVEGIRI 175


>gi|323962199|gb|EGB57793.1| electron transporter [Escherichia coli H489]
          Length = 659

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|224541300|ref|ZP_03681839.1| hypothetical protein CATMIT_00460 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525737|gb|EEF94842.1| hypothetical protein CATMIT_00460 [Catenibacterium mitsuokai DSM
           15897]
          Length = 402

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 109/263 (41%), Gaps = 46/263 (17%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
            H +N+D +  + +   I +VK +G+ G GGAGF T +K +       ++  Y++VN  E
Sbjct: 75  AHENNIDTLTFEEK---IEKVKNAGVVGLGGAGFPTHVKLNVKE---PEKIEYVIVNGAE 128

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EP    D  +M      LIEG  I          +I +      ++E++      C   
Sbjct: 129 CEPYLTSDYRLMLERSKELIEGLKIMLTLYPHAVGYIGIED---NKKEAIHTLEKLC--- 182

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                     ++  I V      Y  G E  L+E+L G++   ++    P +VG      
Sbjct: 183 ---------EHEERISVKVLKTKYPQGGERMLIEALTGRRLNSKM---LPLDVG-----C 225

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDEL 265
            V+NV ++  +   ++      S           + +++G  VN PC VE  +   F  +
Sbjct: 226 IVDNVATVLAIRDAIKYDRPLIS----------TVMTLTGEGVNTPCNVEVPVGTDFQFI 275

Query: 266 IEKHCGGIRGGW-DNLLAVIPGG 287
           +E      RGG  +N+  +I GG
Sbjct: 276 VES-----RGGLKENVEKIISGG 293


>gi|323937424|gb|EGB33702.1| electron transporter [Escherichia coli E1520]
          Length = 631

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|225389877|ref|ZP_03759601.1| hypothetical protein CLOSTASPAR_03626 [Clostridium asparagiforme
           DSM 15981]
 gi|225044070|gb|EEG54316.1| hypothetical protein CLOSTASPAR_03626 [Clostridium asparagiforme
           DSM 15981]
          Length = 441

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +  I + VK +G+ G GGAGF T +K +  PK   +   Y++VN  E EP    D  +M 
Sbjct: 122 KQEIRDIVKEAGIVGLGGAGFPTHVKLT--PKD-ENAIEYILVNGAECEPYLTSDYRMMI 178

Query: 100 HEPHTLIEG 108
            EP  ++ G
Sbjct: 179 EEPEKIVGG 187


>gi|149196444|ref|ZP_01873499.1| Iron-regulated ABC transporter ATPase subunit SufC [Lentisphaera
           araneosa HTCC2155]
 gi|149140705|gb|EDM29103.1| Iron-regulated ABC transporter ATPase subunit SufC [Lentisphaera
           araneosa HTCC2155]
          Length = 250

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           H    DK + KG D+ +NE +   + G  GAG ST      + K+ +  P Y V     S
Sbjct: 8   HAKVADKTILKGLDFEVNEGEVHAIMGPNGAGKST------LSKIIAGHPDYEVTEGTVS 61

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASF 114
                K++D+   EP  +    V  SF
Sbjct: 62  YEVNFKEKDLTDMEPEDIAREGVFLSF 88


>gi|260779357|ref|ZP_05888249.1| electron transport complex protein RnfC [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605521|gb|EEX31816.1| electron transport complex protein RnfC [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 923

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 28/177 (15%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  +M+ 
Sbjct: 134 DELIEIIRQAGVSGMGGAGFPTAKKI----QAGLARTEILIVNAAECEPYITADDMLMQE 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               +I+G  I    +      I +     +  ++L+ A +                  D
Sbjct: 190 HADEVIKGIEIVEHILNPKLTIIGIEDNKPQAIKALEQAAEH----------------KD 233

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           I++      Y  G E  L++ L  K+         PA++GL      V NV S+  +
Sbjct: 234 IVIRVIPTKYPSGGEKQLIKILTNKEVPANS---IPADIGLL-----VQNVGSLQAI 282


>gi|315286322|gb|EFU45758.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 110-3]
          Length = 644

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|323952614|gb|EGB48486.1| electron transporter [Escherichia coli H252]
          Length = 651

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|300819310|ref|ZP_07099509.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 107-1]
 gi|300528081|gb|EFK49143.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 107-1]
          Length = 676

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|293446004|ref|ZP_06662426.1| electron transport complex protein RnfC [Escherichia coli B088]
 gi|291322834|gb|EFE62262.1| electron transport complex protein RnfC [Escherichia coli B088]
          Length = 662

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|170768759|ref|ZP_02903212.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           albertii TW07627]
 gi|170122307|gb|EDS91238.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           albertii TW07627]
          Length = 740

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREALIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|167751857|ref|ZP_02423984.1| hypothetical protein ALIPUT_00099 [Alistipes putredinis DSM 17216]
 gi|167660098|gb|EDS04228.1| hypothetical protein ALIPUT_00099 [Alistipes putredinis DSM 17216]
          Length = 449

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I+  +K +G+ G GGA F T +K +        +  +L++N  E EP    D  +M    
Sbjct: 125 ILARIKEAGIVGMGGAAFPTQVKLTVP---AGKKVEHLIINGVECEPYLTSDHRVMLERS 181

Query: 103 HTLIEGCVIASFAIGAHCAFI 123
             L+ G  I   A+G   A I
Sbjct: 182 EELLVGVTILMRALGVSGASI 202


>gi|333018895|gb|EGK38188.1| electron transport complex protein rnfC [Shigella flexneri K-227]
          Length = 644

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|187777028|ref|ZP_02993501.1| hypothetical protein CLOSPO_00573 [Clostridium sporogenes ATCC
           15579]
 gi|187773956|gb|EDU37758.1| hypothetical protein CLOSPO_00573 [Clostridium sporogenes ATCC
           15579]
          Length = 447

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ I+  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 126 EMTKEEIMKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 182

Query: 97  IMRHEPHTLIEGCVI 111
           +M  E   ++EG  I
Sbjct: 183 LMLEESDKIVEGLKI 197


>gi|331647118|ref|ZP_08348212.1| electron transport complex protein RnfC [Escherichia coli M605]
 gi|331043901|gb|EGI16037.1| electron transport complex protein RnfC [Escherichia coli M605]
          Length = 677

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|261867803|ref|YP_003255725.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413135|gb|ACX82506.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 745

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           ++  L +  + +I ++  +G+ G GGA F T  K     K        L++N  E EP  
Sbjct: 125 LEDFLSQTPEQLIEKIYQAGIAGLGGAVFPTAAKIHSAEKQVK----LLIINGAECEPYI 180

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           TC DR +MR     +IEG  I  + +      I V     +  +SL+ A+
Sbjct: 181 TCDDR-LMRDYADEIIEGVRILRYILRPEKVVIAVEDNKPKAVKSLERAL 229


>gi|313648904|gb|EFS13341.1| electron transport complex protein rnfC [Shigella flexneri 2a str.
           2457T]
          Length = 676

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|153854955|ref|ZP_01996168.1| hypothetical protein DORLON_02174 [Dorea longicatena DSM 13814]
 gi|149752452|gb|EDM62383.1| hypothetical protein DORLON_02174 [Dorea longicatena DSM 13814]
          Length = 471

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 17/79 (21%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFM----------PKVCSDRPH-------YLVVNADESEP 89
           VKA+G+ G GGAGF TG+K +            P++  + P        Y++VNA E EP
Sbjct: 90  VKAAGIVGMGGAGFPTGVKLNINLEETPMGELDPEINPELPKDFKLDCGYILVNAAECEP 149

Query: 90  GTCKDRDIMRHEPHTLIEG 108
           G   +   +  +   LI G
Sbjct: 150 GLEHNTRQIEEQSDKLIRG 168


>gi|323956694|gb|EGB52430.1| electron transporter [Escherichia coli H263]
          Length = 667

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|6900001|emb|CAB71310.1| electron transfer protein [Clostridium sticklandii]
          Length = 402

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 41/232 (17%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPH 103
           I  ++ +G+ G GGAGF T +K +      +    Y++ N  E EP    +  +M  +P 
Sbjct: 80  IEAIQEAGIVGSGGAGFPTHVKLNV-----NLEGGYVIANGAECEPVLGHNIKLMEEDPQ 134

Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV 163
            +I G         A  A+I ++    + R++L+          +L +  +L  D+++ +
Sbjct: 135 LIIRGLKYVKEITNASKAYIAMKA---KHRKALR----------ILKTACELEPDIEVKI 181

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
                 Y  G+E A++  + G   +P  + P  AN         + NVE++  +   +  
Sbjct: 182 L--PDMYPAGDERAIVRDILGVLLEPG-QLPKAAN-------AVIQNVETLKHIVNAIEL 231

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH---CGG 272
              +           TK  +++G V      +  M +   E ++K+   CGG
Sbjct: 232 RKPYI----------TKDITVAGRVMDATDGKVFMDVPVGESVKKYIDLCGG 273


>gi|146311475|ref|YP_001176549.1| electron transport complex protein RnfC [Enterobacter sp. 638]
 gi|145318351|gb|ABP60498.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           sp. 638]
          Length = 673

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG K     +   D+   L++NA E EP    D  +
Sbjct: 130 QSREALIERIHQFGVAGLGGAGFPTGTKL----RGGGDKIQTLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|332758459|gb|EGJ88780.1| electron transport complex protein rnfC [Shigella flexneri K-671]
 gi|332767030|gb|EGJ97229.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           flexneri 2930-71]
          Length = 684

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K         D+   L++NA E EP    D  +
Sbjct: 106 RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRL 161

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 162 MQDCAAQVVEGIRI 175


>gi|161503451|ref|YP_001570563.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189043392|sp|A9MRW8|RNFC_SALAR RecName: Full=Electron transport complex protein rnfC
 gi|160864798|gb|ABX21421.1| hypothetical protein SARI_01525 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 673

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGIDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVIASF 114
                ++EG  I ++
Sbjct: 188 DCAAQIVEGIRILAY 202


>gi|330911436|gb|EGH39946.1| electron transport complex protein RnfC [Escherichia coli AA86]
          Length = 709

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|323186099|gb|EFZ71455.1| electron transport complex protein rnfC [Escherichia coli 1357]
          Length = 708

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|293390123|ref|ZP_06634457.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950657|gb|EFE00776.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 790

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 6/110 (5%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           ++  L +  + +I ++  +G+ G GGA F T  K     K        L++N  E EP  
Sbjct: 125 LEDFLNQTPEQLIEKIYQAGIAGLGGAVFPTAAKIHSAEKQVK----LLIINGAECEPYI 180

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           TC DR +MR     +IEG  I  + +      I V     +  +SL+ A+
Sbjct: 181 TCDDR-LMRDYADEIIEGVRILRYILRPEKVVIAVEDNKPKAVKSLERAL 229


>gi|310659538|ref|YP_003937259.1| electron transfer protein [Clostridium sticklandii DSM 519]
 gi|308826316|emb|CBH22354.1| Electron transfer protein [Clostridium sticklandii]
          Length = 428

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 41/232 (17%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPH 103
           I  ++ +G+ G GGAGF T +K +      +    Y++ N  E EP    +  +M  +P 
Sbjct: 79  IEAIQEAGIVGSGGAGFPTHVKLNV-----NLEGGYVIANGAECEPVLGHNIKLMEEDPQ 133

Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV 163
            +I G         A  A+I ++    + R++L+          +L +  +L  D+++ +
Sbjct: 134 LIIRGLKYVKEITNASKAYIAMKA---KHRKALR----------ILKTACELEPDIEVKI 180

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
                 Y  G+E A++  + G   +P  + P  AN         + NVE++  +   +  
Sbjct: 181 L--PDMYPAGDERAIVRDILGVLLEPG-QLPKAAN-------AVIQNVETLKHIVNAIEL 230

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH---CGG 272
              +           TK  +++G V      +  M +   E ++K+   CGG
Sbjct: 231 RKPYI----------TKDITVAGRVMDATDGKVFMDVPVGESVKKYIDLCGG 272


>gi|333005285|gb|EGK24805.1| electron transport complex protein rnfC [Shigella flexneri VA-6]
          Length = 708

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|323169187|gb|EFZ54863.1| electron transport complex protein rnfC [Shigella sonnei 53G]
          Length = 708

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|218554197|ref|YP_002387110.1| electron transport complex protein RnfC [Escherichia coli IAI1]
 gi|218695192|ref|YP_002402859.1| electron transport complex protein RnfC [Escherichia coli 55989]
 gi|226735440|sp|B7M0I6|RNFC_ECO8A RecName: Full=Electron transport complex protein rnfC
 gi|254807930|sp|B7L5I2|RNFC_ECO55 RecName: Full=Electron transport complex protein rnfC
 gi|218351924|emb|CAU97649.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli 55989]
 gi|218360965|emb|CAQ98538.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli IAI1]
 gi|323152867|gb|EFZ39137.1| electron transport complex protein rnfC [Escherichia coli EPECa14]
          Length = 708

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|91210842|ref|YP_540828.1| electron transport complex protein RnfC [Escherichia coli UTI89]
 gi|218558500|ref|YP_002391413.1| electron transport complex protein RnfC [Escherichia coli S88]
 gi|218689576|ref|YP_002397788.1| electron transport complex protein RnfC [Escherichia coli ED1a]
 gi|123387945|sp|Q1RBG7|RNFC_ECOUT RecName: Full=Electron transport complex protein rnfC
 gi|226735437|sp|B7M9Y3|RNFC_ECO45 RecName: Full=Electron transport complex protein rnfC
 gi|254807931|sp|B7MVA7|RNFC_ECO81 RecName: Full=Electron transport complex protein rnfC
 gi|91072416|gb|ABE07297.1| electron transport complex protein RnfC [Escherichia coli UTI89]
 gi|218365269|emb|CAR02990.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli S88]
 gi|218427140|emb|CAR08023.2| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli ED1a]
 gi|294490842|gb|ADE89598.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli IHE3034]
 gi|307626885|gb|ADN71189.1| electron transport complex protein RnfC [Escherichia coli UM146]
          Length = 708

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|253773413|ref|YP_003036244.1| electron transport complex protein RnfC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324457|gb|ACT29059.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
          Length = 708

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|27366363|ref|NP_761891.1| electron transport complex protein RnfC [Vibrio vulnificus CMCP6]
 gi|27362564|gb|AAO11418.1| Electron transport complex protein rnfC [Vibrio vulnificus CMCP6]
          Length = 919

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 20/150 (13%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D++++ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QQSSDYLLDVIRMAGISGMGGAGFPTAKKI----QSGLGRTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +++     +++G  I    +      I +        ++L++A                 
Sbjct: 186 LLQEHAEEVLQGIEIVEHILQPKLTIIGIEDNKPEAIKALESA----------------A 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKK 186
            + DI++      Y  G E  L++ L  K+
Sbjct: 230 QNRDIVIRVIPTKYPSGGEKQLIKVLTNKE 259


>gi|283833246|ref|ZP_06352987.1| electron transport complex protein RnfC [Citrobacter youngae ATCC
           29220]
 gi|291070882|gb|EFE08991.1| electron transport complex protein RnfC [Citrobacter youngae ATCC
           29220]
          Length = 674

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIARIHQYGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|117623815|ref|YP_852728.1| electron transport complex protein RnfC [Escherichia coli APEC O1]
 gi|166225090|sp|A1ABH4|RNFC_ECOK1 RecName: Full=Electron transport complex protein rnfC
 gi|115512939|gb|ABJ01014.1| electron transport complex protein RnfC [Escherichia coli APEC O1]
          Length = 708

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|332343347|gb|AEE56681.1| electron transport complex RnfC [Escherichia coli UMNK88]
          Length = 708

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|188495694|ref|ZP_03002964.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 53638]
 gi|188490893|gb|EDU65996.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 53638]
          Length = 740

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|325264019|ref|ZP_08130752.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium
           sp. D5]
 gi|324031057|gb|EGB92339.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium
           sp. D5]
          Length = 439

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  RD +I  +  +G+ G GGAGF T +K S  PK   ++  Y++ N  E EP    D  
Sbjct: 118 EMTRDEVIGMIGEAGIVGMGGAGFPTKVKLS--PKE-PEKIDYIIANCAECEPYITADYR 174

Query: 97  IMRHEPHTLIEGCVI 111
            M      L+ G  I
Sbjct: 175 RMLENTEELVSGMKI 189


>gi|315925132|ref|ZP_07921349.1| pyridine nucleotide-disulfide oxidoreductase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622031|gb|EFV01995.1| pyridine nucleotide-disulfide oxidoreductase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 612

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR G   +  ++  ++ G A    + L+ E +++I     CA+G  AA  + 
Sbjct: 50  QTCGKCVPCRIGLLQLKHLLTEVLDGEATMATLALIEETARSISETADCAIGYEAAHMVW 109

Query: 403 GLIKNFRPLIEERIDQYHRCN 423
             ++  R   E  I +  RC+
Sbjct: 110 RCLRECRDDFEAHI-KSGRCH 129


>gi|256003828|ref|ZP_05428815.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum DSM 2360]
 gi|255992166|gb|EEU02261.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum DSM 2360]
          Length = 403

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 34/185 (18%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-RDIMRHEP 102
           I+ ++ SGL G GGAGF   +K S  P     +   L++NA E EP    D R+I+ +  
Sbjct: 87  ISAIRESGLVGLGGAGFPAHVKLSPPP---DKKIDTLIINAAECEPYITSDYREIIENS- 142

Query: 103 HTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
             ++ G  I    +G     I +   + E I+E   + A  D                  
Sbjct: 143 WNVVSGINIIMEILGIENVLIGIEDNKPEAIKEMTRVAATDDR----------------- 185

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I V      Y  G E  L+ +  G+K  P      PA+VG+      V NV S++ +  
Sbjct: 186 -INVIKLKSRYPQGAEKMLIYATTGRKVPPG---KLPADVGV-----IVMNVNSVSFISE 236

Query: 220 ILRRG 224
            ++ G
Sbjct: 237 YIKTG 241


>gi|215486806|ref|YP_002329237.1| electron transport complex protein RnfC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312966607|ref|ZP_07780827.1| electron transport complex protein rnfC [Escherichia coli 2362-75]
 gi|254807929|sp|B7URX0|RNFC_ECO27 RecName: Full=Electron transport complex protein rnfC
 gi|215264878|emb|CAS09264.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312288717|gb|EFR16617.1| electron transport complex protein rnfC [Escherichia coli 2362-75]
          Length = 741

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|325265309|ref|ZP_08132034.1| PduS protein [Clostridium sp. D5]
 gi|324029488|gb|EGB90778.1| PduS protein [Clostridium sp. D5]
          Length = 449

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 104/286 (36%), Gaps = 47/286 (16%)

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +  Y +VNA E EP    D+ + R     LI+G +  +  + A  ++I ++ ++  E  +
Sbjct: 29  KAEYFIVNAAECEPLIETDKYLCRTFADELIKGVMYIAGHLEAKKSYIALKAKYKAEIAA 88

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L+ A+++  A              DI +      Y  G+E  +++ + G+    R     
Sbjct: 89  LKEAIEKNNA--------------DIEIFEMRTFYPAGDEQIIVQQVTGRTVPER---GI 131

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P  VG       V+NV ++  V   L  G               K  S+ G V  P  ++
Sbjct: 132 PIEVG-----AVVDNVGTVLAVYRALTDGGKVTD----------KYLSVVGEVKEPIMLK 176

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG-LKEMGSG 314
             +  +    IE              A  P  S    +  G M G +   D  + +    
Sbjct: 177 VPIGTSVRTCIE--------------AAQPVISDYAIILGGPMMGKVFSDDSVIDQQVVT 222

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             T  +IV+ +   +I+         KH++   C  CR  T    R
Sbjct: 223 KTTGNIIVLPKDHYLIRRTQVSIQRIKHQARSACIQCRMCTDLCPR 268


>gi|323247769|gb|EGA31709.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
          Length = 447

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|289679202|ref|ZP_06500092.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae
           FF5]
          Length = 41

 Score = 38.5 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPC
Sbjct: 1   GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPC 40


>gi|213582925|ref|ZP_03364751.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 456

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 20  REALIERIHQYGVAGLGGAGFPTGVKL----QGGDDKITTLIINAAECEPYITADDRLMQ 75

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 76  DCAAQIVEGIRI 87


>gi|82544003|ref|YP_407950.1| electron transport complex protein RnfC [Shigella boydii Sb227]
 gi|123741996|sp|Q320Y6|RNFC_SHIBS RecName: Full=Electron transport complex protein rnfC
 gi|81245414|gb|ABB66122.1| putative membrane protein [Shigella boydii Sb227]
 gi|320186301|gb|EFW61037.1| Electron transport complex protein RnfC [Shigella flexneri CDC
           796-83]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|332096012|gb|EGJ01017.1| electron transport complex protein rnfC [Shigella boydii 3594-74]
          Length = 716

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 106 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 161

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 162 MQDCAAQVVEGIRI 175


>gi|26247876|ref|NP_753916.1| electron transport complex protein RnfC [Escherichia coli CFT073]
 gi|81748475|sp|Q8FH95|RNFC_ECOL6 RecName: Full=Electron transport complex protein rnfC
 gi|26108279|gb|AAN80481.1|AE016761_56 Electron transport complex protein rnfC [Escherichia coli CFT073]
 gi|307553652|gb|ADN46427.1| electron transport complex protein RnfC [Escherichia coli ABU
           83972]
          Length = 742

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|170020019|ref|YP_001724973.1| electron transport complex protein RnfC [Escherichia coli ATCC
           8739]
 gi|312969650|ref|ZP_07783833.1| electron transport complex protein rnfC [Escherichia coli 1827-70]
 gi|189043391|sp|B1IQC5|RNFC_ECOLC RecName: Full=Electron transport complex protein rnfC
 gi|169754947|gb|ACA77646.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli ATCC 8739]
 gi|310337935|gb|EFQ03024.1| electron transport complex protein rnfC [Escherichia coli 1827-70]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|16129587|ref|NP_416146.1| electron transport complex protein required for the reduction of
           SoxR; predicted membrane-associated NADH oxidoreductase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89108471|ref|AP_002251.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli
           str. K-12 substr. W3110]
 gi|170081293|ref|YP_001730613.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238900845|ref|YP_002926641.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein
           [Escherichia coli BW2952]
 gi|17368316|sp|P77611|RNFC_ECOLI RecName: Full=Electron transport complex protein rnfC
 gi|226735441|sp|B1XFU1|RNFC_ECODH RecName: Full=Electron transport complex protein rnfC
 gi|259494049|sp|C4ZY92|RNFC_ECOBW RecName: Full=Electron transport complex protein rnfC
 gi|1742688|dbj|BAA15384.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli
           str. K12 substr. W3110]
 gi|1787916|gb|AAC74701.1| electron transport complex protein required for the reduction of
           SoxR; predicted membrane-associated NADH oxidoreductase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|169889128|gb|ACB02835.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238861218|gb|ACR63216.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli BW2952]
 gi|260449247|gb|ACX39669.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli DH1]
 gi|309701855|emb|CBJ01167.1| electron transport complex protein [Escherichia coli ETEC H10407]
 gi|315136270|dbj|BAJ43429.1| electron transport complex protein RnfC [Escherichia coli DH1]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|157161091|ref|YP_001458409.1| electron transport complex protein RnfC [Escherichia coli HS]
 gi|166991047|sp|A8A0H2|RNFC_ECOHS RecName: Full=Electron transport complex protein rnfC
 gi|157066771|gb|ABV06026.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli HS]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|194436648|ref|ZP_03068749.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 101-1]
 gi|254161691|ref|YP_003044799.1| electron transport complex protein RnfC [Escherichia coli B str.
           REL606]
 gi|194424680|gb|EDX40666.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 101-1]
 gi|253973592|gb|ACT39263.1| electron transport complex protein RnfC [Escherichia coli B str.
           REL606]
 gi|253977787|gb|ACT43457.1| electron transport complex protein RnfC [Escherichia coli
           BL21(DE3)]
 gi|313848649|emb|CAQ32106.2| member of SoxR-reducing complex [Escherichia coli BL21(DE3)]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|157145890|ref|YP_001453209.1| electron transport complex protein RnfC [Citrobacter koseri ATCC
           BAA-895]
 gi|166225089|sp|A8AH10|RNFC_CITK8 RecName: Full=Electron transport complex protein rnfC
 gi|157083095|gb|ABV12773.1| hypothetical protein CKO_01641 [Citrobacter koseri ATCC BAA-895]
          Length = 705

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  W +  +   + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++N
Sbjct: 119 IERDGWADYQR---RSREELITRIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           A E EP    D  +M+     ++EG  I
Sbjct: 172 AAECEPYITADDRLMQDCAAQVVEGIRI 199


>gi|333017993|gb|EGK37298.1| electron transport complex protein rnfC [Shigella flexneri K-304]
          Length = 601

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K         D+   L++NA E EP    D  +
Sbjct: 23  RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRL 78

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 79  MQDCAAQVVEGIRI 92


>gi|281418619|ref|ZP_06249638.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum JW20]
 gi|281407703|gb|EFB37962.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum JW20]
          Length = 439

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 34/185 (18%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-RDIMRHEP 102
           I+ ++ SGL G GGAGF   +K S  P    D    L++NA E EP    D R+I+ +  
Sbjct: 123 ISAIRESGLVGLGGAGFPAHVKLSPPPDKKIDT---LIINAAECEPYITSDYREIIENS- 178

Query: 103 HTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
             ++ G  I    +G     I +   + E I+E   + A  D                  
Sbjct: 179 WNVVSGINIIMEILGIENVLIGIEDNKPEAIKEMTRVAATDDR----------------- 221

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I V      Y  G E  L+ +  G+K  P      PA+VG+      V NV S++ +  
Sbjct: 222 -INVIKLKSRYPQGAEKMLIYATTGRKVPPG---KLPADVGV-----IVMNVNSVSFISE 272

Query: 220 ILRRG 224
            ++ G
Sbjct: 273 YIKTG 277


>gi|315618815|gb|EFU99398.1| electron transport complex protein rnfC [Escherichia coli 3431]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|24113019|ref|NP_707529.1| electron transport complex protein RnfC [Shigella flexneri 2a str.
           301]
 gi|30063144|ref|NP_837315.1| electron transport complex protein RnfC [Shigella flexneri 2a str.
           2457T]
 gi|110805602|ref|YP_689122.1| electron transport complex protein RnfC [Shigella flexneri 5 str.
           8401]
 gi|81724487|sp|Q83RB9|RNFC_SHIFL RecName: Full=Electron transport complex protein rnfC
 gi|122366544|sp|Q0T4E8|RNFC_SHIF8 RecName: Full=Electron transport complex protein rnfC
 gi|24051983|gb|AAN43236.1| putative membrane protein [Shigella flexneri 2a str. 301]
 gi|30041393|gb|AAP17122.1| putative membrane protein [Shigella flexneri 2a str. 2457T]
 gi|110615150|gb|ABF03817.1| putative membrane protein [Shigella flexneri 5 str. 8401]
 gi|281601063|gb|ADA74047.1| Electron transport complex protein rnfC [Shigella flexneri 2002017]
 gi|332757136|gb|EGJ87476.1| electron transport complex protein rnfC [Shigella flexneri 4343-70]
 gi|332758063|gb|EGJ88388.1| electron transport complex protein rnfC [Shigella flexneri 2747-71]
 gi|333003991|gb|EGK23526.1| electron transport complex protein rnfC [Shigella flexneri K-218]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|157157957|ref|YP_001462918.1| electron transport complex protein RnfC [Escherichia coli E24377A]
 gi|166991046|sp|A7ZM89|RNFC_ECO24 RecName: Full=Electron transport complex protein rnfC
 gi|157079987|gb|ABV19695.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E24377A]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|315060936|gb|ADT75263.1| electron transport complex protein RnfC [Escherichia coli W]
 gi|323378493|gb|ADX50761.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli KO11]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|191165932|ref|ZP_03027769.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B7A]
 gi|193064894|ref|ZP_03045970.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E22]
 gi|260843935|ref|YP_003221713.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein
           [Escherichia coli O103:H2 str. 12009]
 gi|260855454|ref|YP_003229345.1| fused putative 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O26:H11 str. 11368]
 gi|260868121|ref|YP_003234523.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein
           [Escherichia coli O111:H- str. 11128]
 gi|301303141|ref|ZP_07209267.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 124-1]
 gi|190904063|gb|EDV63775.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B7A]
 gi|192927381|gb|EDV81999.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E22]
 gi|257754103|dbj|BAI25605.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O26:H11 str. 11368]
 gi|257759082|dbj|BAI30579.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O103:H2 str. 12009]
 gi|257764477|dbj|BAI35972.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O111:H- str. 11128]
 gi|300841550|gb|EFK69310.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 124-1]
 gi|315257571|gb|EFU37539.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 85-1]
 gi|320197812|gb|EFW72420.1| Electron transport complex protein RnfC [Escherichia coli EC4100B]
 gi|323163522|gb|EFZ49348.1| electron transport complex protein rnfC [Escherichia coli E128010]
 gi|323180943|gb|EFZ66481.1| electron transport complex protein rnfC [Escherichia coli 1180]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|110641752|ref|YP_669482.1| electron transport complex protein RnfC [Escherichia coli 536]
 gi|191173436|ref|ZP_03034964.1| electron transport complex protein RnfC [Escherichia coli F11]
 gi|123049190|sp|Q0THJ8|RNFC_ECOL5 RecName: Full=Electron transport complex protein rnfC
 gi|110343344|gb|ABG69581.1| electron transport complex protein RnfC [Escherichia coli 536]
 gi|190906278|gb|EDV65889.1| electron transport complex protein RnfC [Escherichia coli F11]
          Length = 774

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|194425849|ref|ZP_03058405.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B171]
 gi|194415904|gb|EDX32170.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B171]
          Length = 740

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|324019506|gb|EGB88725.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 117-3]
          Length = 543

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 99  REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 154

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 155 DCAAQVVEGIRI 166


>gi|222033388|emb|CAP76129.1| electron transport complex protein rnfC [Escherichia coli LF82]
 gi|312946229|gb|ADR27056.1| electron transport complex protein RnfC [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 775

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|74312044|ref|YP_310463.1| electron transport complex protein RnfC [Shigella sonnei Ss046]
 gi|123759605|sp|Q3Z1Y4|RNFC_SHISS RecName: Full=Electron transport complex protein rnfC
 gi|73855521|gb|AAZ88228.1| putative membrane protein [Shigella sonnei Ss046]
          Length = 740

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|125974915|ref|YP_001038825.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum ATCC 27405]
 gi|125715140|gb|ABN53632.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum ATCC 27405]
 gi|316939126|gb|ADU73160.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum DSM 1313]
          Length = 439

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 34/185 (18%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-RDIMRHEP 102
           I+ ++ SGL G GGAGF   +K S  P    D    L++NA E EP    D R+I+ +  
Sbjct: 123 ISAIRESGLVGLGGAGFPAHVKLSPPPDKKIDT---LIINAAECEPYITSDYREIIENS- 178

Query: 103 HTLIEGCVIASFAIGAHCAFIYV---RGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
             ++ G  I    +G     I +   + E I+E   + A  D                  
Sbjct: 179 WNVVSGINIIMEILGIENVLIGIEDNKPEAIKEMTRVAATDDR----------------- 221

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I V      Y  G E  L+ +  G+K  P      PA+VG+      V NV S++ +  
Sbjct: 222 -INVIKLKSRYPQGAEKMLIYATTGRKVPPG---KLPADVGV-----IVMNVNSVSFISE 272

Query: 220 ILRRG 224
            ++ G
Sbjct: 273 YIKTG 277


>gi|193070267|ref|ZP_03051211.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E110019]
 gi|192956448|gb|EDV86907.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E110019]
          Length = 740

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|309793394|ref|ZP_07687821.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 145-7]
 gi|308122981|gb|EFO60243.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 145-7]
          Length = 772

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|262402646|ref|ZP_06079207.1| electron transport complex protein RnfC [Vibrio sp. RC586]
 gi|262351428|gb|EEZ00561.1| electron transport complex protein RnfC [Vibrio sp. RC586]
          Length = 830

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR 
Sbjct: 134 ETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQ 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFI 123
               +I+G  I    +      I
Sbjct: 190 YAQEIIQGIEIVEHILKPKLTII 212


>gi|320195473|gb|EFW70098.1| Electron transport complex protein RnfC [Escherichia coli
           WV_060327]
          Length = 740

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|323187054|gb|EFZ72370.1| electron transport complex protein rnfC [Escherichia coli RN587/1]
          Length = 773

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|289422880|ref|ZP_06424711.1| respiratory-chain NADH dehydrogenase family protein
           [Peptostreptococcus anaerobius 653-L]
 gi|289156710|gb|EFD05344.1| respiratory-chain NADH dehydrogenase family protein
           [Peptostreptococcus anaerobius 653-L]
          Length = 437

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 30/206 (14%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCK 93
           +EKG   I   VK +G+ G GGAGF   +K        +D     Y++ NA E EP    
Sbjct: 74  IEKGA-TIAETVKNAGIVGLGGAGFPAHVKLG------TDLGGTGYVLCNAAECEPILSH 126

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE----------C 143
           + + +  EP  L+ G  +   A  A      ++    +E ++L+A +D+           
Sbjct: 127 NMNQLLLEPEKLLRGMKLCMEATNAAHGVFALKEIHPKEIKALEAIIDDERIRIEAMPNM 186

Query: 144 YASGLLGSNSK--LGYDVDI-IVHHGAGAYICGEET--ALLESLEGKKGQPRLKPPFPAN 198
           Y  G   +  +  LG ++D   +   A A +   ET  A+ ++++       LKP    N
Sbjct: 187 YPMGEERAVVRECLGIELDTDQLPSAANAVVINSETMCAIADAVD------DLKPLIEKN 240

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRG 224
           + + G   T N++E    VP   R G
Sbjct: 241 ITVAGYLNTANSLEIFMNVPIGTRVG 266


>gi|261211947|ref|ZP_05926233.1| electron transport complex protein RnfC [Vibrio sp. RC341]
 gi|260838555|gb|EEX65206.1| electron transport complex protein RnfC [Vibrio sp. RC341]
          Length = 825

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +MR     +I
Sbjct: 140 IRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQYAQEII 195

Query: 107 EGCVIASFAIGAHCAFI 123
           +G  I    +      I
Sbjct: 196 QGIEIVEHILKPKLTII 212


>gi|315634428|ref|ZP_07889715.1| electron transport complex protein RnfC [Aggregatibacter segnis
           ATCC 33393]
 gi|315477018|gb|EFU67763.1| electron transport complex protein RnfC [Aggregatibacter segnis
           ATCC 33393]
          Length = 701

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG- 90
           ++    + R+ +I ++  +G+ G GGA F T  K     K        L++N  E EP  
Sbjct: 125 IEDFFTQTREQLIEKIYQAGIAGLGGAVFPTAAKIHSAEKQVK----LLIINGAECEPYI 180

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           TC DR +MR     +IEG  I  + +      I +    +    +L+ A+
Sbjct: 181 TCDDR-LMRDYAGEIIEGVRILRYILRPEKVVIAIEDNKLEAVSALERAL 229


>gi|323224588|gb|EGA08865.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323254810|gb|EGA38608.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
          Length = 552

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|255691580|ref|ZP_05415255.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260622789|gb|EEX45660.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 445

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+ ++  +G+ G GGA F T +K    P   S +   +++NA E EP    D  
Sbjct: 120 ELSSEEIVKKIAEAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M      ++ G  I   A+  + AFI
Sbjct: 177 LMLEHAEEIMVGVSILMKAVKVNKAFI 203


>gi|322616074|gb|EFY12990.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322628769|gb|EFY25554.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631479|gb|EFY28237.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638814|gb|EFY35509.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322654536|gb|EFY50857.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322671624|gb|EFY67745.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|323221947|gb|EGA06338.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323234339|gb|EGA18426.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323260352|gb|EGA43970.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 562

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|322646614|gb|EFY43122.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
          Length = 565

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|322650862|gb|EFY47253.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
          Length = 559

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|281178701|dbj|BAI55031.1| putative transport protein [Escherichia coli SE15]
          Length = 806

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K         D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|324006984|gb|EGB76203.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 57-2]
          Length = 808

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|323217293|gb|EGA02013.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
          Length = 579

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|323198190|gb|EFZ83299.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
          Length = 557

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|210621817|ref|ZP_03292846.1| hypothetical protein CLOHIR_00791 [Clostridium hiranonis DSM 13275]
 gi|210154581|gb|EEA85587.1| hypothetical protein CLOHIR_00791 [Clostridium hiranonis DSM 13275]
          Length = 433

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 23/174 (13%)

Query: 8   IFTNLYGLQGKSLSDS--MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           I  ++YG+  +S+ D     + +    DK +E      I+ V+ +G+ G GGAGF T +K
Sbjct: 45  IHASIYGVV-ESIDDKKITIKANEKQDDKFVELTSTEPIDLVREAGIVGLGGAGFPTHVK 103

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
               P    ++   L++NA E EP    +   +      +++        + A  A I +
Sbjct: 104 LG-KP---FEKGGVLLINAAECEPILDHNMRYINENAEYVVKSVKTVMDMVNAEKAIIGI 159

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
           +     E   L+AA+D C                +I +H     Y  GEE AL+
Sbjct: 160 KSLHTEEIAKLEAAID-CD---------------NITIHGLENMYPMGEERALI 197


>gi|323232168|gb|EGA16274.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
          Length = 561

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|322658697|gb|EFY54955.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
          Length = 570

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|261339612|ref|ZP_05967470.1| electron transport complex protein RnfC [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318434|gb|EFC57372.1| electron transport complex protein RnfC [Enterobacter cancerogenus
           ATCC 35316]
          Length = 678

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG K     +   D+   L++NA E EP    D  +
Sbjct: 130 QSREALIERIHQFGVAGLGGAGFPTGTKL----RGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQVVEGIRI 199


>gi|322622924|gb|EFY19766.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
          Length = 586

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|313673826|ref|YP_004051937.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940582|gb|ADR19774.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 646

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 321 IVMDRSTDIIKAIWR-LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +V D+  DI+K +   +     +  CG+C P R GT  +   + +L +  +    +DL+ 
Sbjct: 50  LVFDKEADILKTLADYMFEISSYGCCGRCFPGRTGTRIIAEELMKLREDKSNAAPLDLIK 109

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++  +I     C +   A  P+   I++F   I   + + +R
Sbjct: 110 DLCVSINKSAKCTVAPTAVIPVIKFIEHFSDEIGLNVSKQYR 151


>gi|323205623|gb|EFZ90586.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
          Length = 590

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|322620523|gb|EFY17385.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322685564|gb|EFY81560.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
          Length = 569

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|251799748|ref|YP_003014479.1| glucose-1,6-bisphosphate synthase [Paenibacillus sp. JDR-2]
 gi|247547374|gb|ACT04393.1| Glucose-1,6-bisphosphate synthase [Paenibacillus sp. JDR-2]
          Length = 570

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 41/72 (56%)

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172
           +F  G   ++ Y+ G++ R+++++ A++  C A+    S  K  YDV + ++   G Y+ 
Sbjct: 402 AFLFGYEESYGYLTGDYARDKDAVVASLLICEAAAYYSSQGKTLYDVLLELYAKHGFYLE 461

Query: 173 GEETALLESLEG 184
           G E+  L+ L+G
Sbjct: 462 GLESRTLKGLDG 473


>gi|322667964|gb|EFY64124.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
          Length = 582

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|301647804|ref|ZP_07247591.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 146-1]
 gi|301074064|gb|EFK88870.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 146-1]
          Length = 665

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG+K         D+   L++NA E EP    D  +
Sbjct: 23  RSREELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRL 78

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 79  MQDCAAQVVEGIRI 92


>gi|323947999|gb|EGB43992.1| electron transporter [Escherichia coli H120]
          Length = 643

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|323211028|gb|EFZ95887.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323237790|gb|EGA21849.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323266729|gb|EGA50216.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 595

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|261258339|ref|ZP_05950872.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. FRIK966]
          Length = 589

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|121997517|ref|YP_001002304.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588922|gb|ABM61502.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 681

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           ++  L+   + ++  +  +G+RG GGA F + +K +   +   D    LVVN  E +   
Sbjct: 304 IEAPLQADPEALLRRIGEAGVRGMGGAAFPSALKLADGARSGVD---TLVVNGVECDTYL 360

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             D  ++R     +I+G  IA+ A GA    + V+
Sbjct: 361 TCDETLLRMRAAAIIDGARIAARACGAERILVAVK 395


>gi|238911689|ref|ZP_04655526.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 644

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|16760456|ref|NP_456073.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|25330737|pir||AE0692 probable NADH reducing dehydrogenase STY1665 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502752|emb|CAD01910.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 673

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGDDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|29141784|ref|NP_805126.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213051629|ref|ZP_03344507.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425981|ref|ZP_03358731.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649168|ref|ZP_03379221.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855037|ref|ZP_03383277.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|29137412|gb|AAO68975.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 673

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGDDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|237731407|ref|ZP_04561888.1| electron transport complex protein RnfC [Citrobacter sp. 30_2]
 gi|226906946|gb|EEH92864.1| electron transport complex protein RnfC [Citrobacter sp. 30_2]
          Length = 564

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIARIHQYGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|320658803|gb|EFX26477.1| electron transport complex protein RnfC [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 631

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|320086067|emb|CBY95841.1| Electron transport complex protein rnfC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 642

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|52424786|ref|YP_087923.1| putative glutamate synthase (NADPH) small subunit [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306838|gb|AAU37338.1| GltD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 612

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 37/74 (50%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ++CG+C PCR+G   +  ++  ++ G      +  + E+++ I   + CA+G   A  I 
Sbjct: 50  QTCGKCVPCRDGIPHLSFLLRDILAGEGDDSTMRQIRELAEMIRDGSDCAIGYQPAIEIL 109

Query: 403 GLIKNFRPLIEERI 416
             I+ F+   E  I
Sbjct: 110 DSIEEFKEEYESHI 123


>gi|53713889|ref|YP_099881.1| electron transport complex protein RnfC [Bacteroides fragilis
           YCH46]
 gi|60682097|ref|YP_212241.1| electron transport complex protein [Bacteroides fragilis NCTC 9343]
 gi|253567119|ref|ZP_04844570.1| electron transport complex protein RnfC [Bacteroides sp. 3_2_5]
 gi|265764232|ref|ZP_06092800.1| electron transport complex protein RnfC [Bacteroides sp. 2_1_16]
 gi|52216754|dbj|BAD49347.1| Electron transport complex protein RnfC [Bacteroides fragilis
           YCH46]
 gi|60493531|emb|CAH08318.1| electron transport complex protein [Bacteroides fragilis NCTC 9343]
 gi|251944243|gb|EES84752.1| electron transport complex protein RnfC [Bacteroides sp. 3_2_5]
 gi|263256840|gb|EEZ28186.1| electron transport complex protein RnfC [Bacteroides sp. 2_1_16]
 gi|301163567|emb|CBW23118.1| electron transport complex protein [Bacteroides fragilis 638R]
          Length = 445

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+ ++  +G+ G GGA F T +K    P   S +   +++NA E EP    D  
Sbjct: 120 ELTSEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M      ++ G  I   A+  + AFI
Sbjct: 177 LMLEHAEEVMVGVAILMKAVKVNKAFI 203


>gi|206575962|ref|YP_002238213.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           pneumoniae 342]
 gi|226735447|sp|B5XWP9|RNFC_KLEP3 RecName: Full=Electron transport complex protein rnfC; AltName:
           Full=Nitrogen fixation protein rnfC
 gi|206565020|gb|ACI06796.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           pneumoniae 342]
          Length = 753

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG K     +  SD+   L++NA E EP    D  +
Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGSDKIKTLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     +++G  I
Sbjct: 186 MQDCAAQIVDGIRI 199


>gi|260655573|ref|ZP_05861061.1| electron transport complex, RnfABCDGE type, C subunit [Jonquetella
           anthropi E3_33 E1]
 gi|260630021|gb|EEX48215.1| electron transport complex, RnfABCDGE type, C subunit [Jonquetella
           anthropi E3_33 E1]
          Length = 439

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I + +K +G+ G GGAGF T +K +       D+   L++NA E EP    D  ++  +P
Sbjct: 123 IRDVIKNTGIVGMGGAGFPTFIKLTPPKDAVVDQ---LIINASECEPYLTCDYRLILEDP 179

Query: 103 HTLIEG 108
             +++G
Sbjct: 180 QPIMDG 185


>gi|322665219|gb|EFY61407.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|323194067|gb|EFZ79266.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323202876|gb|EFZ87911.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 642

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|227498875|ref|ZP_03929015.1| electron transport complex protein [Acidaminococcus sp. D21]
 gi|226904327|gb|EEH90245.1| electron transport complex protein [Acidaminococcus sp. D21]
          Length = 447

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 71/342 (20%), Positives = 131/342 (38%), Gaps = 57/342 (16%)

Query: 33  DKILEKGRDWIINEVKASGLR-----GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           + I E+  + I  +V  + LR     G GGA F T +K++  PK  +     +++N  E 
Sbjct: 103 ETIKERSDEEITPDVIRTALREGGSVGLGGATFPTAVKYA-PPKEGARPIDTILLNGIEC 161

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  IM      +I+G      A GA    I                +++     
Sbjct: 162 EPFITGDHRIMLEWADEMIQGLKYFMMASGAQKGII---------------GIEDNKPDA 206

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           +     K+  + +I V   A  Y  G E  L+ +  G+    R     PA+VG+      
Sbjct: 207 IALVKEKVASEPNIEVCVCAEKYPEGSEKHLIYAATGRTVPDRG---LPADVGV-----I 258

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V+NV +      ++++    Y           ++ +ISG  VN P      +   + + +
Sbjct: 259 VDNVGTAVACYRMVKKNIPLYE----------RVTTISGDGVNKPGNYICRLGTLYSDAV 308

Query: 267 EKHCGGIRGGWDNLLA-VIPGGSSVPCL--PAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           E   GG++G     ++  +  G S P L  P  +  GA++ ++        +  +  +  
Sbjct: 309 ELAAGGLKGTPGKFISGGMMMGFSTPSLDYPIAKWSGAVLIFNSESPFAQYVEPSPCVHC 368

Query: 324 DR----------STDIIKAI----WRLSVFYKHESCGQCTPC 351
            R           T+I++A+    W  +  +   +C +C  C
Sbjct: 369 ARCVDACPMKLEPTEIVQAVKRQNWEEAERFSCHACVECGSC 410


>gi|150390047|ref|YP_001320096.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149949909|gb|ABR48437.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 442

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 42/222 (18%)

Query: 54  GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113
           G GGA F T +K S  P     +   +++N  E EP    D  IM   P  ++ G  +  
Sbjct: 136 GMGGATFPTHVKLSPPP---GKKLDTIILNGAECEPYLTADHRIMLESPDEIVYGLKVIM 192

Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICG 173
            A+ A  A+I +        E+++ AV          +N K     DI V      Y  G
Sbjct: 193 KAVQAEKAYIGIENNKPDAIEAMKKAV----------ANEK-----DIEVVSLETKYPQG 237

Query: 174 EETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
            E  L+ +        R+ P    P +VG+      VNNV + A +   ++ G       
Sbjct: 238 AEKQLITACTQ-----RVVPSGGLPMDVGVL-----VNNVATAAQIAKTIKTGMPLIE-- 285

Query: 232 GRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272
                   ++ ++SG  +  P  +   +     ++IE  CGG
Sbjct: 286 --------RITTVSGKAIKTPKNLLIKVGTPMKDIIE-QCGG 318


>gi|332097845|gb|EGJ02818.1| electron transport complex protein rnfC [Shigella dysenteriae
           155-74]
          Length = 708

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|262044609|ref|ZP_06017664.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259038010|gb|EEW39226.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 582

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG K     +   D+   L++NA E EP    D  +
Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGGDKIKTLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQIVEGIRI 199


>gi|323268765|gb|EGA52224.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 655

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|322641119|gb|EFY37762.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
          Length = 644

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|299146146|ref|ZP_07039214.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. 3_1_23]
 gi|298516637|gb|EFI40518.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. 3_1_23]
          Length = 445

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+ ++  +G+ G GGA F T +K    P   S +   +++NA E EP    D  
Sbjct: 120 ELSAEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M      ++ G  I   A+  + AFI
Sbjct: 177 LMLEHAEEIMVGVSILMKAVKVNKAFI 203


>gi|320653114|gb|EFX21308.1| electron transport complex protein RnfC [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
          Length = 677

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|205352830|ref|YP_002226631.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226735451|sp|B5RAK2|RNFC_SALG2 RecName: Full=Electron transport complex protein rnfC
 gi|205272611|emb|CAR37520.1| putative electron transport complex protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627901|gb|EGE34244.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 673

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|329898085|ref|ZP_08272294.1| Electron transport complex protein RnfC [gamma proteobacterium
           IMCC3088]
 gi|328920957|gb|EGG28382.1| Electron transport complex protein RnfC [gamma proteobacterium
           IMCC3088]
          Length = 574

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R  ++  ++  G+ G GGAGF +  K +      SD    L++N  E EP    D  +MR
Sbjct: 124 RTKLLGLIRDHGIAGLGGAGFPSAYKLN------SDHIDTLIINGVECEPYITADDRLMR 177

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
                L +G  I     GA    I +        E++++A +
Sbjct: 178 ERSDLLEQGINILQHITGAQRVLIGIEDNKPEATEAVRSACE 219


>gi|320181352|gb|EFW56271.1| Electron transport complex protein RnfC [Shigella boydii ATCC 9905]
          Length = 708

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|317488630|ref|ZP_07947173.1| hypothetical protein HMPREF1023_00871 [Eggerthella sp. 1_3_56FAA]
 gi|316912282|gb|EFV33848.1| hypothetical protein HMPREF1023_00871 [Eggerthella sp. 1_3_56FAA]
          Length = 617

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR+G   +  +++R+V   A +  ++ L  +++ I   + CA+G +AA   +
Sbjct: 55  QTCGKCVPCRDGIPQLAAMLKRVVDCDADEGVLEGLRALAEMIRDTSDCAIGYEAARSVL 114

Query: 402 QGL 404
           +GL
Sbjct: 115 EGL 117


>gi|260174483|ref|ZP_05760895.1| Na+-transporting NADH:ubiquinone oxidoreductase, electron transport
           complex protein rnfC [Bacteroides sp. D2]
 gi|315922750|ref|ZP_07918990.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           D2]
 gi|313696625|gb|EFS33460.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           D2]
          Length = 445

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+ ++  +G+ G GGA F T +K    P   S +   +++NA E EP    D  
Sbjct: 120 ELSAEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M      ++ G  I   A+  + AFI
Sbjct: 177 LMLEHAEEIMVGVSILMKAVKVNKAFI 203


>gi|237714547|ref|ZP_04545028.1| Na+ transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           D1]
 gi|262406413|ref|ZP_06082962.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           2_1_22]
 gi|293370174|ref|ZP_06616734.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|294643291|ref|ZP_06721117.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           ovatus SD CC 2a]
 gi|294806485|ref|ZP_06765326.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298481059|ref|ZP_06999253.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. D22]
 gi|229445316|gb|EEO51107.1| Na+ transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           D1]
 gi|262355116|gb|EEZ04207.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           2_1_22]
 gi|292634671|gb|EFF53200.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|292641414|gb|EFF59606.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           ovatus SD CC 2a]
 gi|294446348|gb|EFG14974.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295083950|emb|CBK65473.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           xylanisolvens XB1A]
 gi|298272633|gb|EFI14200.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. D22]
          Length = 445

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+ ++  +G+ G GGA F T +K    P   S +   +++NA E EP    D  
Sbjct: 120 ELSAEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M      ++ G  I   A+  + AFI
Sbjct: 177 LMLEHAEEIMVGVSILMKAVKVNKAFI 203


>gi|207857039|ref|YP_002243690.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|226735450|sp|B5QV02|RNFC_SALEP RecName: Full=Electron transport complex protein rnfC
 gi|206708842|emb|CAR33172.1| Electron transport complex protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 704

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|323242646|gb|EGA26667.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
          Length = 673

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|298385331|ref|ZP_06994889.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. 1_1_14]
 gi|298261472|gb|EFI04338.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. 1_1_14]
          Length = 445

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+ ++  +G+ G GGA F T +K    P   S +   +++NA E EP    D  
Sbjct: 120 ELSSEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M      ++ G  I   A+  + AFI
Sbjct: 177 LMLEHAEEVMVGVSILMKAVKVNKAFI 203


>gi|119473030|ref|ZP_01614852.1| electron transport complex protein RnfC [Alteromonadales bacterium
           TW-7]
 gi|119444608|gb|EAW25920.1| electron transport complex protein RnfC [Alteromonadales bacterium
           TW-7]
          Length = 780

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ +  +G+ G GGAGF T +K     K+      + +VNA E EP    D  +MR   
Sbjct: 136 LVDIIHQAGISGMGGAGFPTYIKADTKQKI-----DFFIVNAVECEPYITADDTLMREHA 190

Query: 103 HTLIEG 108
             +I+G
Sbjct: 191 AEIIQG 196


>gi|111075057|gb|ABH04901.1| ethanolamine utilization Fe-S center protein eut [Heliobacillus
           mobilis]
          Length = 444

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 130/318 (40%), Gaps = 62/318 (19%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ I+  VK +G+ G GGAGF T +K +    +       ++ N  E EP     + +M 
Sbjct: 2   REKIVKAVKEAGVVGAGGAGFPTHIKMNASADI-------IIANGAECEPLLRSHQHLMA 54

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            E   ++ G +    A GA  ++I ++ ++    E+L+ +++  +A G           V
Sbjct: 55  AESDRVVLGLIAVMLATGAQKSYIGLKKKYSVAIEALEQSIER-HAKG----------RV 103

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ +      Y  G+E  L+  + GK   P    P    V +    T VN  +++  VP 
Sbjct: 104 ELFIL--PDFYPAGDEQVLVYEVTGKI-IPEGGIPLHVGVVVINVETLVNITKALDGVPV 160

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           +                  TK  +++G V  P T++  + I    LIE   G I   +  
Sbjct: 161 M------------------TKYVTVTGAVRQPVTLKVPIGIPIRLLIEAAGGAIVNDY-- 200

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII--KAIWRLS 337
             A+I GG          M G I++ D      +G     +IV+ +   +I  K +   +
Sbjct: 201 --ALIDGGP---------MMGRIVEVDSPVTKTTG----GIIVLPKDHSLIAGKTLPWSA 245

Query: 338 VFYKHES----CGQCTPC 351
           +  + +S    C  CT C
Sbjct: 246 IANRSKSVCCACRACTDC 263


>gi|29346028|ref|NP_809531.1| Na+-transporting NADH:ubiquinone oxidoreductase electron transport
           complex protein RnfC [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337922|gb|AAO75725.1| Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport
           complex protein rnfC [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 445

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+ ++  +G+ G GGA F T +K    P   S +   +++NA E EP    D  
Sbjct: 120 ELSSEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M      ++ G  I   A+  + AFI
Sbjct: 177 LMLEHAEEVMVGVSILMKAVKVNKAFI 203


>gi|168819208|ref|ZP_02831208.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343902|gb|EDZ30666.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 704

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|322680007|gb|EFY76046.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
          Length = 673

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|224584034|ref|YP_002637832.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254807932|sp|C0Q508|RNFC_SALPC RecName: Full=Electron transport complex protein rnfC
 gi|224468561|gb|ACN46391.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 704

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|332140732|ref|YP_004426470.1| electron transport complex protein RnfC [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550754|gb|AEA97472.1| electron transport complex protein RnfC [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 852

 Score = 38.1 bits (87), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + +I  +  +G+ G GGAGF T +K S    V      +L++N  E EP    D  +MR 
Sbjct: 138 NELIEAICQAGISGMGGAGFPTHIKTSTSKPV-----EFLILNGIECEPYITSDDRLMRE 192

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
               + +G  I +  IG     + V        E+L  A
Sbjct: 193 HAWQIRQGLDILTHLIGPKAIIVAVEDNKPEAFEALSIA 231


>gi|325831614|ref|ZP_08164831.1| pyridine nucleotide-disulfide oxidoreductase [Eggerthella sp. HGA1]
 gi|325486485|gb|EGC88934.1| pyridine nucleotide-disulfide oxidoreductase [Eggerthella sp. HGA1]
          Length = 612

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR+G   +  +++R+V   A +  ++ L  +++ I   + CA+G +AA   +
Sbjct: 50  QTCGKCVPCRDGIPQLAAMLKRVVDCDADEGVLEGLRALAEMIRDTSDCAIGYEAARSVL 109

Query: 402 QGL 404
           +GL
Sbjct: 110 EGL 112


>gi|284047498|ref|YP_003397837.1| electron transport complex, RnfABCDGE type, C subunit
           [Acidaminococcus fermentans DSM 20731]
 gi|283951719|gb|ADB46522.1| electron transport complex, RnfABCDGE type, C subunit
           [Acidaminococcus fermentans DSM 20731]
          Length = 455

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 91/243 (37%), Gaps = 35/243 (14%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D I   ++  G+ G GGA F T +K++  PK        +++N  E EP    D   +  
Sbjct: 124 DLIRQVLREKGIAGMGGATFPTAVKYA-PPKEGHCPIDTILLNGIECEPFVTADHRTLLE 182

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               +I+G      A GA    I +        E +Q                K+  + +
Sbjct: 183 YADEIIQGLKYFMLASGAAKGIIGIEDNKPDAIELMQ---------------KKVAGEAN 227

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I V      Y  G E  L+ +  G+    R     PA+VG+      V+NV +       
Sbjct: 228 IEVCVCKEKYPQGSEKHLIYAATGRTVPDR---GLPADVGV-----IVDNVGTAVAACRA 279

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           ++     Y           ++ +ISG  VN P      +   F + +EK  GG++G    
Sbjct: 280 VKNNIPLYE----------RVVTISGDGVNKPGNYIVRLGTLFSDAVEKAAGGLKGDPGK 329

Query: 280 LLA 282
           ++A
Sbjct: 330 IVA 332


>gi|208816704|ref|ZP_03257824.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4045]
 gi|208731047|gb|EDZ79736.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4045]
          Length = 708

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|198244954|ref|YP_002215678.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|226735449|sp|B5FIE7|RNFC_SALDC RecName: Full=Electron transport complex protein rnfC
 gi|197939470|gb|ACH76803.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623424|gb|EGE29769.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 704

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|194431936|ref|ZP_03064226.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           dysenteriae 1012]
 gi|194419844|gb|EDX35923.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           dysenteriae 1012]
          Length = 740

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|253568564|ref|ZP_04845975.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           1_1_6]
 gi|251842637|gb|EES70717.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           1_1_6]
          Length = 445

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+ ++  +G+ G GGA F T +K    P   S +   +++NA E EP    D  
Sbjct: 120 ELSSEEIVKKIADAGIVGLGGACFPTQVKLCPPP---SFKAECVIINAVECEPYLTADHQ 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +M      ++ G  I   A+  + AFI
Sbjct: 177 LMLEHAEEVMVGVSILMKAVKVNKAFI 203


>gi|51246885|ref|YP_066769.1| propanediol utilization protein (PduS) [Desulfotalea psychrophila
           LSv54]
 gi|50877922|emb|CAG37762.1| related to propanediol utilization protein (PduS) [Desulfotalea
           psychrophila LSv54]
          Length = 447

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 91/235 (38%), Gaps = 47/235 (20%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           +D ++  +  +G+ G GGAGF   +K+         +   ++ N  E EP    D+ IMR
Sbjct: 5   KDSLLRSILDAGIVGEGGAGFPAHVKY-------DTQVDTVIANGCECEPLLHTDQHIMR 57

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                ++          GA    I ++ ++          + + +A  + G+  +L   +
Sbjct: 58  TRAADIVVAMQAIVSVTGATRGVIGIKRKYTE--------IAKIFADCIEGTGLEL-VQL 108

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP--FPANVGLYGCPTTVNNVESIAVV 217
           D         Y  G+E  L+  + GK       PP   P +VG       V NV ++A V
Sbjct: 109 D-------NFYPAGDEQTLVYEVTGKT-----IPPLGLPKDVG-----AVVANVGTLAGV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
              ++     +           K+ +++G+V  P  +   +     E +  HCGG
Sbjct: 152 ADAMKGTPVTH-----------KIVTVTGNVGSPAVIRVPLGTKLSECL-AHCGG 194


>gi|15802043|ref|NP_288065.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           EDL933]
 gi|17368144|sp|P58324|RNFC_ECO57 RecName: Full=Electron transport complex protein rnfC
 gi|12515618|gb|AAG56618.1|AE005386_9 putative membrane protein [Escherichia coli O157:H7 str. EDL933]
          Length = 740

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|324113403|gb|EGC07378.1| electron transporter [Escherichia fergusonii B253]
          Length = 627

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIARIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|161614124|ref|YP_001588089.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|189043393|sp|A9N025|RNFC_SALPB RecName: Full=Electron transport complex protein rnfC
 gi|161363488|gb|ABX67256.1| hypothetical protein SPAB_01863 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|197250222|ref|YP_002146588.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|226735448|sp|B5F6J0|RNFC_SALA4 RecName: Full=Electron transport complex protein rnfC
 gi|197213925|gb|ACH51322.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|168229832|ref|ZP_02654890.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470158|ref|ZP_03076142.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194456522|gb|EDX45361.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335440|gb|EDZ22204.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|209918942|ref|YP_002293026.1| electron transport complex protein RnfC [Escherichia coli SE11]
 gi|226735443|sp|B6IB67|RNFC_ECOSE RecName: Full=Electron transport complex protein rnfC
 gi|209912201|dbj|BAG77275.1| putative transport protein [Escherichia coli SE11]
          Length = 740

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|62180045|ref|YP_216462.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|75483500|sp|Q57PI0|RNFC_SALCH RecName: Full=Electron transport complex protein rnfC
 gi|62127678|gb|AAX65381.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322714515|gb|EFZ06086.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 704

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|332091211|gb|EGI96300.1| electron transport complex protein rnfC [Shigella boydii 5216-82]
          Length = 740

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|168240973|ref|ZP_02665905.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448184|ref|YP_002045495.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|226735452|sp|B4THD4|RNFC_SALHS RecName: Full=Electron transport complex protein rnfC
 gi|194406488|gb|ACF66707.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339389|gb|EDZ26153.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|168463131|ref|ZP_02697062.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633861|gb|EDX52213.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|168264620|ref|ZP_02686593.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|200390674|ref|ZP_03217285.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603119|gb|EDZ01665.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205346950|gb|EDZ33581.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|56413574|ref|YP_150649.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362498|ref|YP_002142135.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|81360680|sp|Q5PIB9|RNFC_SALPA RecName: Full=Electron transport complex protein rnfC
 gi|226735454|sp|B5BKB2|RNFC_SALPK RecName: Full=Electron transport complex protein rnfC
 gi|56127831|gb|AAV77337.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093975|emb|CAR59471.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|255281825|ref|ZP_05346380.1| PduS protein [Bryantella formatexigens DSM 14469]
 gi|255267498|gb|EET60703.1| PduS protein [Bryantella formatexigens DSM 14469]
          Length = 449

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 28/160 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  VKA+G+ G GGAGF T +K +        +  Y +VNA E EP    D+ + R   
Sbjct: 3   LIETVKAAGVVGAGGAGFPTHVKLN-------TKVEYFIVNAAECEPLIETDKYLCRTWA 55

Query: 103 HTLIEGC-VIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
             ++    VIA F +GA    I ++ ++ RE  +L+ AV+ C            G DV+I
Sbjct: 56  ERIVRTIPVIADF-LGASKKVIALKAKYEREIAALKQAVETC------------GSDVEI 102

Query: 162 IVHHGAGA-YICGEETALLESLEGKKGQPRLKPPFPANVG 200
               G G  Y  G+E  L++ + G+    R     P++VG
Sbjct: 103 F---GLGYFYPAGDEQTLIQQVTGRSVPER---GLPSDVG 136


>gi|167551572|ref|ZP_02345326.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323654|gb|EDZ11493.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|16764805|ref|NP_460420.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167994288|ref|ZP_02575380.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|24638187|sp|Q8ZPM2|RNFC_SALTY RecName: Full=Electron transport complex protein rnfC
 gi|16419978|gb|AAL20379.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|205327844|gb|EDZ14608.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246661|emb|CBG24471.1| Electron transport complex protein rnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993347|gb|ACY88232.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157990|emb|CBW17485.1| Electron transport complex protein rnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912440|dbj|BAJ36414.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224076|gb|EFX49139.1| Electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129727|gb|ADX17157.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988342|gb|AEF07325.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|194443713|ref|YP_002040706.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|226735453|sp|B4T594|RNFC_SALNS RecName: Full=Electron transport complex protein rnfC
 gi|194402376|gb|ACF62598.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|168750557|ref|ZP_02775579.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4113]
 gi|168757455|ref|ZP_02782462.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4401]
 gi|168771171|ref|ZP_02796178.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4486]
 gi|168775859|ref|ZP_02800866.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4196]
 gi|168783452|ref|ZP_02808459.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4076]
 gi|168789466|ref|ZP_02814473.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC869]
 gi|168800889|ref|ZP_02825896.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC508]
 gi|195939018|ref|ZP_03084400.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4024]
 gi|208810265|ref|ZP_03252141.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4206]
 gi|208821817|ref|ZP_03262137.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4042]
 gi|209399637|ref|YP_002270699.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4115]
 gi|254793246|ref|YP_003078083.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. TW14359]
 gi|261227926|ref|ZP_05942207.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|226735438|sp|B5Z463|RNFC_ECO5E RecName: Full=Electron transport complex protein rnfC
 gi|187768715|gb|EDU32559.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4196]
 gi|188015238|gb|EDU53360.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4113]
 gi|188999240|gb|EDU68226.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4076]
 gi|189355522|gb|EDU73941.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4401]
 gi|189359999|gb|EDU78418.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4486]
 gi|189370921|gb|EDU89337.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC869]
 gi|189376869|gb|EDU95285.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC508]
 gi|208724781|gb|EDZ74488.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4206]
 gi|208741940|gb|EDZ89622.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4042]
 gi|209161037|gb|ACI38470.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4115]
 gi|254592646|gb|ACT72007.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. TW14359]
 gi|326343546|gb|EGD67308.1| Electron transport complex protein RnfC [Escherichia coli O157:H7
           str. 1125]
          Length = 772

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K         D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|204927691|ref|ZP_03218892.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323033|gb|EDZ08229.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 729

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|197265683|ref|ZP_03165757.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243938|gb|EDY26558.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|15831592|ref|NP_310365.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. Sakai]
 gi|168763667|ref|ZP_02788674.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4501]
 gi|217328656|ref|ZP_03444737.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. TW14588]
 gi|13361805|dbj|BAB35761.1| putative membrane protein [Escherichia coli O157:H7 str. Sakai]
 gi|189366209|gb|EDU84625.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4501]
 gi|217318003|gb|EEC26430.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. TW14588]
 gi|320188315|gb|EFW62977.1| Electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC1212]
 gi|326341995|gb|EGD65776.1| Electron transport complex protein RnfC [Escherichia coli O157:H7
           str. 1044]
          Length = 772

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K         D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|148977610|ref|ZP_01814186.1| electron transport complex protein RnfC [Vibrionales bacterium
           SWAT-3]
 gi|145963125|gb|EDK28393.1| electron transport complex protein RnfC [Vibrionales bacterium
           SWAT-3]
          Length = 964

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 20/155 (12%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           V+    K  D +++ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP  
Sbjct: 125 VEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----QSGLGRTDILIVNAAECEPYI 180

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +++     +++G  I    +      I +        ++  AA+     +     
Sbjct: 181 TSDDKLLQEHAEEVLKGIEIVEHILQPKLTVIGI-------EDNKPAAIKAVEVA----- 228

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
                 D DI++      Y  G E  L++ L  K+
Sbjct: 229 ----AKDKDIVIRVIPTKYPSGGEKQLIKILTNKE 259


>gi|322677330|gb|EFY73394.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
          Length = 735

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|84393396|ref|ZP_00992155.1| electron transport complex protein RnfC [Vibrio splendidus 12B01]
 gi|84376005|gb|EAP92894.1| electron transport complex protein RnfC [Vibrio splendidus 12B01]
          Length = 967

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 20/155 (12%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           V+    K  D +++ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP  
Sbjct: 125 VEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----QSGLGRTDILIVNAAECEPYI 180

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +++     +++G  +    +      I +        ++L+ A            
Sbjct: 181 TSDDKLLQEHAEEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIA------------ 228

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
                 D DI++      Y  G E  L++ L  K+
Sbjct: 229 ----AKDKDIVIRVIPTKYPSGGEKQLIKILTNKE 259


>gi|257791994|ref|YP_003182600.1| putative glutamate synthase (NADPH) small subunit [Eggerthella
           lenta DSM 2243]
 gi|257475891|gb|ACV56211.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Eggerthella lenta DSM 2243]
          Length = 617

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG-DAAAWPI 401
           ++CG+C PCR+G   +  +++R+V   A +  ++ L  +++ I   + CA+G +AA   +
Sbjct: 55  QTCGKCVPCRDGIPQLAAMLKRVVDCEADEGVLEGLRALAEMIRDASDCAIGYEAARSVL 114

Query: 402 QGL 404
           +GL
Sbjct: 115 EGL 117


>gi|291282761|ref|YP_003499579.1| Electron transport complex protein RnfC [Escherichia coli O55:H7
           str. CB9615]
 gi|290762634|gb|ADD56595.1| Electron transport complex protein RnfC [Escherichia coli O55:H7
           str. CB9615]
 gi|320647300|gb|EFX16108.1| electron transport complex protein RnfC [Escherichia coli O157:H-
           str. 493-89]
 gi|320652594|gb|EFX20863.1| electron transport complex protein RnfC [Escherichia coli O157:H-
           str. H 2687]
 gi|320668653|gb|EFX35458.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. LSU-61]
          Length = 772

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K         D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|271964835|ref|YP_003339031.1| hypothetical protein Sros_3349 [Streptosporangium roseum DSM 43021]
 gi|270508010|gb|ACZ86288.1| hypothetical protein Sros_3349 [Streptosporangium roseum DSM 43021]
          Length = 210

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           L+VIPG       P  ++ GA  DYD LK + +  G A   ++D + D++ A W ++V
Sbjct: 64  LSVIPGIRVEAVWPTREIPGAAPDYDLLKHVAADPGRAFATLVDAAPDLVSAAWAVAV 121


>gi|168235530|ref|ZP_02660588.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734341|ref|YP_002114470.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|226735455|sp|B4TV17|RNFC_SALSV RecName: Full=Electron transport complex protein rnfC
 gi|194709843|gb|ACF89064.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291094|gb|EDY30447.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 732

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQYGVAGLGGAGFPTGVKL----QGGGDKITTLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQIVEGIRI 199


>gi|156934161|ref|YP_001438077.1| electron transport complex protein RnfC [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166225091|sp|A7MMK9|RNFC_ENTS8 RecName: Full=Electron transport complex protein rnfC
 gi|156532415|gb|ABU77241.1| hypothetical protein ESA_01988 [Cronobacter sakazakii ATCC BAA-894]
          Length = 776

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREALIERIHQFGVAGLGGAGFPTGTKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     +I+G  I
Sbjct: 186 MQDCAAQIIDGVRI 199


>gi|82777103|ref|YP_403452.1| electron transport complex protein RnfC [Shigella dysenteriae
           Sd197]
 gi|309788404|ref|ZP_07683008.1| electron transport complex protein rnfC [Shigella dysenteriae 1617]
 gi|123742129|sp|Q32FE4|RNFC_SHIDS RecName: Full=Electron transport complex protein rnfC
 gi|81241251|gb|ABB61961.1| putative membrane protein [Shigella dysenteriae Sd197]
 gi|308923786|gb|EFP69289.1| electron transport complex protein rnfC [Shigella dysenteriae 1617]
          Length = 772

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K         D+   L++NA E EP    D  +M+
Sbjct: 132 REELIERIHQFGVAGLGGAGFPTGVKLQG----GGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|160902086|ref|YP_001567667.1| electron transport complex, RnfABCDGE type, C subunit [Petrotoga
           mobilis SJ95]
 gi|160359730|gb|ABX31344.1| electron transport complex, RnfABCDGE type, C subunit [Petrotoga
           mobilis SJ95]
          Length = 440

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           H +N  K     ++ +IN VK +G+ G GGA F + +K S        +  YL++N  E 
Sbjct: 113 HDENFKKF---SKEELINIVKKAGIVGLGGAMFPSHVKLSIP---AGKKVDYLIINGAEC 166

Query: 88  EPGTCKDRDIMR 99
           EP    D  +MR
Sbjct: 167 EPYITVDDMMMR 178


>gi|325497183|gb|EGC95042.1| electron transport complex protein RnfC [Escherichia fergusonii
           ECD227]
          Length = 726

 Score = 37.7 bits (86), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIARIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|325261657|ref|ZP_08128395.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
 gi|324033111|gb|EGB94388.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
          Length = 400

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 35/69 (50%)

Query: 341 KHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWP 400
           + +SCG+C  CREG   +  +   + +G  +   ID+  E+ + +E  T C +G  +A  
Sbjct: 234 RKQSCGRCVFCREGLLQLQYMNNEIKEGRGKPDYIDMTKEIGEAMEFSTPCTMGQVSAKI 293

Query: 401 IQGLIKNFR 409
           +   ++ F 
Sbjct: 294 VLSAVELFE 302


>gi|218548775|ref|YP_002382566.1| electron transport complex protein RnfC [Escherichia fergusonii
           ATCC 35469]
 gi|226735446|sp|B7LQP1|RNFC_ESCF3 RecName: Full=Electron transport complex protein rnfC
 gi|218356316|emb|CAQ88934.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia fergusonii ATCC 35469]
          Length = 726

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP    D  +M+
Sbjct: 132 REELIARIHQFGVAGLGGAGFPTGVKL----QGGGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|225017719|ref|ZP_03706911.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum
           DSM 5476]
 gi|224949512|gb|EEG30721.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum
           DSM 5476]
          Length = 436

 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 91/245 (37%), Gaps = 42/245 (17%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++  +  V   GL G GGAGF T  K SF   V  D    L++N  E EP    D   M 
Sbjct: 121 KEEFLEAVYEQGLVGLGGAGFPTHTKLSFGEDVKVD---ILIINGAECEPYITSDNREMV 177

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                ++ G       +G   A I +      ++E+L           LL   ++    +
Sbjct: 178 ENADDIVYGIEQVQKFLGIERALIGIED---NKQEAL----------SLLAQKTESSKGI 224

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKP--PFPANVGLYGCPTTVNNVESIAVV 217
           +++       Y  G E  L+ S  G     R+ P    PA VG+      V NV SI+  
Sbjct: 225 EVVSLK--SRYPQGAEKVLIYSTTG-----RVVPEGAIPAEVGV-----VVMNVTSISKF 272

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              LR G    +          K  ++ G  +  P  V   +     ++I+  CGG +  
Sbjct: 273 GRYLRTGMPLTA----------KRLTVDGDCITNPQNVRALIGTPVQDVID-FCGGFKKT 321

Query: 277 WDNLL 281
              +L
Sbjct: 322 PKKIL 326


>gi|152970518|ref|YP_001335627.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955367|gb|ABR77397.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 715

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG K     +   D+   L++NA E EP    D  +
Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGGDKIKTLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQIVEGIRI 199


>gi|260597797|ref|YP_003210368.1| electron transport complex protein RnfC [Cronobacter turicensis
           z3032]
 gi|260216974|emb|CBA30618.1| Electron transport complex protein rnfC [Cronobacter turicensis
           z3032]
          Length = 849

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG K     +   D+   L++NA E EP    D  +
Sbjct: 130 RSREALIERIHQFGVAGLGGAGFPTGTKL----QGGGDKIETLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     +I+G  I
Sbjct: 186 MQDCAAQIIDGVRI 199


>gi|153814812|ref|ZP_01967480.1| hypothetical protein RUMTOR_01027 [Ruminococcus torques ATCC 27756]
 gi|317500331|ref|ZP_07958556.1| Na(+)-translocating NADH-quinone reductase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089660|ref|ZP_08338559.1| hypothetical protein HMPREF1025_02142 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847843|gb|EDK24761.1| hypothetical protein RUMTOR_01027 [Ruminococcus torques ATCC 27756]
 gi|316898272|gb|EFV20318.1| Na(+)-translocating NADH-quinone reductase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330405028|gb|EGG84566.1| hypothetical protein HMPREF1025_02142 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 439

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  R+ II  +  +G+ G GGAGF T +K S  PK   ++  Y++ N  E EP    D  
Sbjct: 118 EMTREEIIERIGEAGIVGMGGAGFPTRVKLS--PKE-PEKIEYIIANCAECEPYITADYR 174

Query: 97  IMRHEPHTLIEG 108
            M      L+ G
Sbjct: 175 RMLENTGQLVNG 186


>gi|320537373|ref|ZP_08037328.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           phagedenis F0421]
 gi|320145838|gb|EFW37499.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           phagedenis F0421]
          Length = 473

 Score = 37.4 bits (85), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           ++  I  ++  G+ G GGA F T +K S  P    D   Y++ N  E EP    D   M 
Sbjct: 120 KEEAIARIRDCGICGMGGAAFPTHIKLSPPPNTKID---YVLANGAECEPYLTTDAATMY 176

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
           H    +++G  I    + A    I +          L+ A+ +      L          
Sbjct: 177 HSADDIVDGLSIVMHILSASKGIIVLEDNKTDLVPFLEKALAK------LKDRPDTSGSF 230

Query: 160 DIIVHHGAGAYICGEETALLESLEGKK 186
           DI +      Y  G E  L+E   G++
Sbjct: 231 DISIQLCKTKYPQGGEKNLVEVATGRQ 257


>gi|238895009|ref|YP_002919743.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238547325|dbj|BAH63676.1| electron transport complex protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 753

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG K     +   D+   L++NA E EP    D  +
Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGGDKIKTLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     ++EG  I
Sbjct: 186 MQDCAAQIVEGIRI 199


>gi|188587192|ref|YP_001918737.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351879|gb|ACB86149.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 440

 Score = 37.4 bits (85), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPGTCKDRDIMRHEPHTL 105
           +K SG+ G GGA F T +       V   +P  YL++N  E EP    D   M   P  L
Sbjct: 128 LKDSGIAGMGGAAFPTYVN------VNQSQPIEYLLLNGAECEPYLTCDHRQMIEMPEKL 181

Query: 106 IEGCVIASFAIGAHCAFI 123
           I+G  I    IGA   +I
Sbjct: 182 IKGAEILMRIIGAKKCYI 199


>gi|86147961|ref|ZP_01066265.1| electron transport complex protein RnfC [Vibrio sp. MED222]
 gi|85834286|gb|EAQ52440.1| electron transport complex protein RnfC [Vibrio sp. MED222]
          Length = 902

 Score = 37.4 bits (85), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 20/155 (12%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           V+    K  D +++ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP  
Sbjct: 125 VEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----QSGLGRTDILIVNAAECEPYI 180

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +++     +++G  +    +      I +        ++L+ A            
Sbjct: 181 TSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPDAIKALEIA------------ 228

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
                 D DI++      Y  G E  L++ L  K+
Sbjct: 229 ----ARDKDIVIRVIPTKYPSGGEKQLIKILTNKE 259


>gi|89073352|ref|ZP_01159876.1| electron transport complex protein RnfC [Photobacterium sp. SKA34]
 gi|89050839|gb|EAR56313.1| electron transport complex protein RnfC [Photobacterium sp. SKA34]
          Length = 762

 Score = 37.4 bits (85), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWS-FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           +I  ++ SG+ G GGAGF T  K    +  V       L++NA E EP    D  +MR  
Sbjct: 136 LIETIRLSGIAGLGGAGFPTARKLQGGLGNV-----DILIINAAECEPYITADDRLMRDY 190

Query: 102 PHTLIEGCVIASFAIGAHCAFI 123
              +IEG  I    I      I
Sbjct: 191 AEEVIEGVRILRHIISPKLTII 212


>gi|289825954|ref|ZP_06545113.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 442

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 35/187 (18%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
            +VNA E EP    D+ +M  +   L+ G   A  A GA    I ++ ++ R  ++L   
Sbjct: 38  FLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDAL--- 94

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                 S LL +  +L    D+        Y  G+E   +    G++  P      PA+V
Sbjct: 95  ------SPLLPAGIRLHILPDV--------YPAGDEVLTIWMATGRRVAPAA---LPASV 137

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           G+      VNNV+      T+L    +    F        +  +++G V  P TV   + 
Sbjct: 138 GV-----VVNNVQ------TVLNIARAVEQQFPVTR----RTLTVNGAVARPLTVTVPVG 182

Query: 260 ITFDELI 266
           ++  E++
Sbjct: 183 MSLHEVL 189


>gi|16760985|ref|NP_456602.1| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29141319|ref|NP_804661.1| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052538|ref|ZP_03345416.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213418914|ref|ZP_03351980.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213425584|ref|ZP_03358334.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213649054|ref|ZP_03379107.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213850296|ref|ZP_03381194.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|25513185|pir||AH0761 probable ferredoxin pduS [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503283|emb|CAD02414.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136946|gb|AAO68510.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 442

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 35/187 (18%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
            +VNA E EP    D+ +M  +   L+ G   A  A GA    I ++ ++ R  ++L   
Sbjct: 38  FLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDAL--- 94

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                 S LL +  +L    D+        Y  G+E   +    G++  P      PA+V
Sbjct: 95  ------SPLLPAGIRLHILPDV--------YPAGDEVLTIWMATGRRVAPAA---LPASV 137

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           G+      VNNV+      T+L    +    F        +  +++G V  P TV   + 
Sbjct: 138 GV-----VVNNVQ------TVLNIARAVEQQFPVTR----RTLTVNGAVARPLTVTVPVG 182

Query: 260 ITFDELI 266
           ++  E++
Sbjct: 183 MSLHEVL 189


>gi|153938051|ref|YP_001391784.1| putative electron transport protein [Clostridium botulinum F str.
           Langeland]
 gi|152933947|gb|ABS39445.1| putative electron transport protein [Clostridium botulinum F str.
           Langeland]
          Length = 436

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 84/203 (41%), Gaps = 30/203 (14%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ N  E EP    +  +  + P  +I+G   A  A  A  A+I ++G+  +  E L+ 
Sbjct: 111 YVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAKKAYIGIKGKRKKAIEVLKE 170

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            ++          N ++   +DI        Y  GEE AL+ S+ G+  +P  + P  AN
Sbjct: 171 HLEN-------EKNIQIKEVIDI--------YPSGEERALIHSIFGEWLKPT-QIPIEAN 214

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
             +    T  N   ++     ++ +  +      +          I  HV     ++E +
Sbjct: 215 CVVLNAETLANITRAVEDRKPVIDKDITLMGKLKK---------GIGPHV----FLQEPI 261

Query: 259 SITFDELIEKHCGGIRGGWDNLL 281
             +  ++IE  CGGI G +  ++
Sbjct: 262 GKSMKDMIEI-CGGIDGEYGEII 283


>gi|295096019|emb|CBK85109.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 673

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +I  +   G+ G GGAGF TG K         D+   L++NA E EP    D  +M+
Sbjct: 132 REALIERIHQFGVAGLGGAGFPTGAKLHG----GGDKIETLIINAAECEPYITADDRLMQ 187

Query: 100 HEPHTLIEGCVI 111
                ++EG  I
Sbjct: 188 DCAAQVVEGIRI 199


>gi|290509259|ref|ZP_06548630.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55]
 gi|289778653|gb|EFD86650.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55]
          Length = 551

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG K     +   D+   L++NA E EP    D  +
Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGGDKIKTLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     +++G  I
Sbjct: 186 MQDCAAQIVDGIRI 199


>gi|90579150|ref|ZP_01234960.1| electron transport complex protein RnfC [Vibrio angustum S14]
 gi|90439983|gb|EAS65164.1| electron transport complex protein RnfC [Vibrio angustum S14]
          Length = 858

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWS-FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
           +I  ++ SG+ G GGAGF T  K    +  V       L++NA E EP    D  +MR  
Sbjct: 136 LIETIRLSGIAGLGGAGFPTARKLQGGLGNV-----DILIINAAECEPYITADDRLMRDY 190

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
              +IEG  I    I      I +        ++L+  V E 
Sbjct: 191 AEEVIEGVRILRHIISPKLTIIGIEDNKPEAIKALEQHVTEA 232


>gi|301061234|ref|ZP_07202016.1| NADH-quinone oxidoreductase subunit F domain protein [delta
           proteobacterium NaphS2]
 gi|300444553|gb|EFK08536.1| NADH-quinone oxidoreductase subunit F domain protein [delta
           proteobacterium NaphS2]
          Length = 46

 Score = 37.0 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 303 MDYDGLKEMGSG--LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           MD+D + ++G G  LGT AV+V D +  ++     L  F+  ESCG
Sbjct: 1   MDFDSMAKIGPGHRLGTGAVMVFDHTCCLVGITLNLIQFFARESCG 46


>gi|120553868|ref|YP_958219.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter
           aquaeolei VT8]
 gi|120323717|gb|ABM18032.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter
           aquaeolei VT8]
          Length = 609

 Score = 37.0 bits (84), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP-HYLVVNADESEPG 90
           +D   +  R+ ++  ++ +G+ G GGAGF T +K     +   DR    L++N  E EP 
Sbjct: 116 IDDYKQLDREAVLQRIREAGISGMGGAGFPTDIKL----RPPRDRKVDTLILNGAECEPY 171

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAI 116
              D   MR +   ++ G  + ++ +
Sbjct: 172 ITADDMTMREQAAEVVAGLKVMAWIL 197


>gi|213616359|ref|ZP_03372185.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 356

 Score = 37.0 bits (84), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 35/187 (18%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
            +VNA E EP    D+ +M  +   L+ G   A  A GA    I ++ ++ R  ++L   
Sbjct: 38  FLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDAL--- 94

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                 S LL +  +L    D+        Y  G+E   +    G++  P      PA+V
Sbjct: 95  ------SPLLPAGIRLHILPDV--------YPAGDEVLTIWMATGRRVAPAA---LPASV 137

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           G+      VNNV+      T+L    +    F        +  +++G V  P TV   + 
Sbjct: 138 GV-----VVNNVQ------TVLNIARAVEQQFPVTR----RTLTVNGAVARPLTVTVPVG 182

Query: 260 ITFDELI 266
           ++  E++
Sbjct: 183 MSLHEVL 189


>gi|289577375|ref|YP_003476002.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter italicus Ab9]
 gi|297543662|ref|YP_003675964.1| RnfABCDGE type electron transport complex subunit C
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527088|gb|ADD01440.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter italicus Ab9]
 gi|296841437|gb|ADH59953.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 444

 Score = 37.0 bits (84), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II  ++ +G+ G GGAGF T +K S        +   ++VN  E EP    D  +M   P
Sbjct: 127 IIEIIREAGITGMGGAGFPTHVKLS---PPSDKKIDTILVNGAECEPYLTTDHRLMVEYP 183

Query: 103 HTLIEGCVIASFAIGAHCAFIYV 125
             ++ G      A+G     I V
Sbjct: 184 EKIVFGLKAIMKAVGVERGIIGV 206


>gi|258545780|ref|ZP_05706014.1| electron transport complex protein RnfC [Cardiobacterium hominis
           ATCC 15826]
 gi|258518970|gb|EEV87829.1| electron transport complex protein RnfC [Cardiobacterium hominis
           ATCC 15826]
          Length = 630

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMR 99
           D +   + A G+ G GGAGF T  K              LV+NA E EP  TC D  I R
Sbjct: 136 DALRERIAACGIVGLGGAGFPTARKLGHPANT-------LVINAAECEPYITCDDLQI-R 187

Query: 100 HEPHTLIEGCVIASFAIGA-HCAF 122
                +I G  IA+  +GA H  F
Sbjct: 188 ENAADIIHGAQIAAKILGAEHIHF 211


>gi|168180629|ref|ZP_02615293.1| putative electron transport protein [Clostridium botulinum NCTC
           2916]
 gi|182668399|gb|EDT80378.1| putative electron transport protein [Clostridium botulinum NCTC
           2916]
          Length = 436

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 30/203 (14%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ N  E EP    +  +  + P  +I+G   A  A  A  A+I ++G+  +  E L+ 
Sbjct: 111 YVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAKKAYIGIKGKRKKAIEVLKE 170

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            +           N ++   +DI        Y  GEE AL+ S+ G+  +P  + P  AN
Sbjct: 171 HLKN-------EENIQIKEVIDI--------YPSGEERALIHSIFGEWLKPT-QIPIEAN 214

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
             +    T  N   ++     ++ +  +      +          I  HV     ++E +
Sbjct: 215 CVVLNAETLANITRAVENRKPVIDKDITLMGKLKK---------GIGPHV----ILQEPI 261

Query: 259 SITFDELIEKHCGGIRGGWDNLL 281
             +  ++IE  CGGI G +  ++
Sbjct: 262 GKSMKDMIEI-CGGIDGEYGEII 283


>gi|149912038|ref|ZP_01900631.1| electron transport complex protein RnfC [Moritella sp. PE36]
 gi|149804899|gb|EDM64934.1| electron transport complex protein RnfC [Moritella sp. PE36]
          Length = 931

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 21/127 (16%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            +L++NA E EP    D  +MR     +I+G  I    I      I +        ++L+
Sbjct: 166 EFLLINAAECEPYITSDDVLMRERADDIIQGIEILRHMIKPALCVIGIEDNKPDAAQALE 225

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK---KGQPRLKPP 194
            A++            K+    DIIV      Y  G E  L++ L GK   KGQ      
Sbjct: 226 TAIN------------KINLSNDIIVRKVPTKYPNGGEKQLIQMLTGKEISKGQ------ 267

Query: 195 FPANVGL 201
            PA  G+
Sbjct: 268 IPAQSGI 274


>gi|260427004|ref|ZP_05780983.1| eleCtron transport complex, rnfabcdge type, c subunit [Citreicella
           sp. SE45]
 gi|260421496|gb|EEX14747.1| eleCtron transport complex, rnfabcdge type, c subunit [Citreicella
           sp. SE45]
          Length = 476

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMRHE 101
           I   V  +G+ G GGA F   +K +   +      H L++NA E EP  TC DR  +R  
Sbjct: 169 IAARVAEAGIVGMGGATFPAAVKLNLRDRYAL---HTLIINAAECEPYLTCDDRH-LRER 224

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGE 128
              + +G  I + A+G     + + G+
Sbjct: 225 AEEVADGAGIMARALGVARIIVAIEGD 251


>gi|209695337|ref|YP_002263266.1| electron transport complex protein RnfC [Aliivibrio salmonicida
           LFI1238]
 gi|208009289|emb|CAQ79555.1| electron transport complex protein RnfC [Aliivibrio salmonicida
           LFI1238]
          Length = 716

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 4/100 (4%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  ++ SG+ G GGAGF T  K     +    +   L++NA E EP    D  +M+   
Sbjct: 137 LIERIRQSGISGMGGAGFPTSRKL----QSGIGKADMLIINAAECEPYITADDRLMQDYA 192

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
             +I G  I    +    A I +        ++L A V E
Sbjct: 193 AEVIVGIKILQHILTPKIAIIGIEDNKPEAIKALNAIVTE 232


>gi|237738936|ref|ZP_04569417.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           2_1_31]
 gi|229423536|gb|EEO38583.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           2_1_31]
          Length = 435

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 7   RIFTNLYGLQGKSLS---DSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGF 60
           +I   +Y L GK ++   ++  +  W  + KI       +  +++ ++  G+ G GGA F
Sbjct: 81  KIENRVYPLSGKVMTIFIENDKKEEWAELTKIANWETADKKELLDIIREKGIVGIGGATF 140

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
            T +K +  P    D    L++N  E EP    D  +M   P +
Sbjct: 141 PTHVKLNPPPNTKLDS---LILNGAECEPYLNSDNRLMLENPSS 181


>gi|56413045|ref|YP_150120.1| ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197361969|ref|YP_002141606.1| ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56127302|gb|AAV76808.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093446|emb|CAR58904.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 442

 Score = 36.6 bits (83), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 35/187 (18%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
            +VNA E EP    D+ +M  +   L+ G + A  A GA       R   I  +E  + A
Sbjct: 38  FLVNAAECEPMLKVDQQLMWQQAARLVRGVLYAMTATGA-------REGVIAPKEKYRRA 90

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +D    + LL +  +L    D+        Y  G+E   +    G++  P      PA+V
Sbjct: 91  IDAL--TPLLPAGIRLHILPDV--------YPAGDEVLTIWMATGRRVAPAA---LPASV 137

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           G+      VNNV+      T+L    +    F        +  +++G V  P TV   + 
Sbjct: 138 GV-----VVNNVQ------TVLNIARAVEQQFPVTR----RTLTVNGAVARPLTVTVPVG 182

Query: 260 ITFDELI 266
           ++  E++
Sbjct: 183 MSLHEVL 189


>gi|237808455|ref|YP_002892895.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
 gi|237500716|gb|ACQ93309.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
          Length = 459

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 35/186 (18%)

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           +VNA E EP    D+ +M      LI G      A GA    I ++ ++     +L+  +
Sbjct: 56  LVNAAECEPMLKVDQQLMTQHASQLIRGLRYGMAATGAREGIIALKAKYQPAIAALEPLL 115

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
            E                 ++ +H     Y  G+E   +    G++  P      P ++G
Sbjct: 116 PE-----------------NVRIHILPDVYPAGDEVITIWQATGRRVPPAA---LPISIG 155

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           +      VNNV+      T+L   A+  +    E     +  +I+G V  P TV   + +
Sbjct: 156 V-----VVNNVQ------TLLNLAAALET----ETPVTHRTLTINGAVRNPMTVTVPLGV 200

Query: 261 TFDELI 266
           T  +++
Sbjct: 201 TLRDVL 206


>gi|213024342|ref|ZP_03338789.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 344

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 35/187 (18%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
            +VNA E EP    D+ +M  +   L+ G   A  A GA    I ++ ++ R  ++L   
Sbjct: 38  FLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDAL--- 94

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                 S LL +  +L    D+        Y  G+E   +    G++  P      PA+V
Sbjct: 95  ------SPLLPAGIRLHILPDV--------YPAGDEVLTIWMATGRRVAPAA---LPASV 137

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           G+      VNNV+      T+L    +    F        +  +++G V  P TV   + 
Sbjct: 138 GV-----VVNNVQ------TVLNIARAVEQQFPVTR----RTLTVNGAVARPLTVTVPVG 182

Query: 260 ITFDELI 266
           ++  E++
Sbjct: 183 MSLHEVL 189


>gi|170758234|ref|YP_001787803.1| putative electron transport protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405223|gb|ACA53634.1| putative electron transport protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 436

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 30/203 (14%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ N  E EP    +  +  + P  +I+G   A  A  A  A+I ++G+  +  E L+ 
Sbjct: 111 YVIANCAECEPTLHHNVYLAENHPELIIKGVKYAMKATNAKKAYIGIKGKRKKAIEVLKE 170

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            +           N ++   +DI        Y  GEE AL+ S+ G+  +P  + P  AN
Sbjct: 171 HLKN-------EENIQIKEVIDI--------YPSGEERALIHSIFGEWLKPT-QIPIEAN 214

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
             +    T  N   ++     ++ +  +       E   G  +F           ++E +
Sbjct: 215 CVVLNAETLANITRAVEDRKPVIDKDITLMGKL--EKGIGPHVF-----------LQEPI 261

Query: 259 SITFDELIEKHCGGIRGGWDNLL 281
             +  ++IE  CGGI G +  ++
Sbjct: 262 GKSMKDMIEI-CGGIDGEYGEII 283


>gi|121997094|ref|YP_001001881.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588499|gb|ABM61079.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 506

 Score = 36.6 bits (83), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 115/307 (37%), Gaps = 62/307 (20%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG-TCKDRDIMRHE 101
           I   V  +G+ G GGA F   +K      V +     L++N  E EP  TC DR +MR  
Sbjct: 132 IAARVGEAGIVGMGGAAFPAAVKLGAGQPVAT-----LILNGGECEPYLTCDDR-LMRER 185

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
              +I+G  + + A+GA    I V         +L+ A D       LG     G DV  
Sbjct: 186 AAGIIDGAQLMARALGAERTAIGVEDNKPEAIHALRRASD------ALG-----GPDVVP 234

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           +       +  G E  L+ +L G++       P  A  G  G    V+NV +   V    
Sbjct: 235 V----PSLWPQGSEKHLIYTLTGREV------PAGARAGDIG--VVVHNVGTAYAVHRAA 282

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R G    S   R    G       G V  P   E  + +    LIE+  GG+R     +L
Sbjct: 283 RHGRPLIS---RPVTVG------GGAVAEPGNFEAPLGLPLQALIEQ-AGGLREPPARVL 332

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           A             G M G +       E     GT  VI +  +T+I +A  R  +   
Sbjct: 333 A------------GGPMMGQVAPL----EAAVAKGTNGVIALT-ATEIREAEGRPCI--- 372

Query: 342 HESCGQC 348
              CG+C
Sbjct: 373 --RCGRC 377


>gi|325663070|ref|ZP_08151520.1| hypothetical protein HMPREF0490_02260 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470524|gb|EGC73754.1| hypothetical protein HMPREF0490_02260 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 438

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           V  +G+ G GGAGF T +K S           Y++VNA E EPG C +   +  +   +I
Sbjct: 82  VAYAGITGMGGAGFPTAVKLS-----ADLHGGYILVNAAECEPGLCHNIRQIEEQCDKII 136

Query: 107 EG 108
            G
Sbjct: 137 RG 138


>gi|170756335|ref|YP_001782031.1| putative electron transport protein [Clostridium botulinum B1 str.
           Okra]
 gi|169121547|gb|ACA45383.1| putative electron transport protein [Clostridium botulinum B1 str.
           Okra]
          Length = 436

 Score = 36.2 bits (82), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 30/203 (14%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y++ N  E EP    +  +  + P  +I+G   A  A  A  A+I ++G+  +  E L+ 
Sbjct: 111 YVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAKKAYIGIKGKRKKAIEVLKE 170

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            +           N ++   +DI        Y  GEE AL+ S+ G+  +P  + P  AN
Sbjct: 171 HLKN-------EENIQIKEVIDI--------YPSGEERALIHSIFGEWLKPT-QIPIEAN 214

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
             +    T  N   ++     ++ +  +      +          I  HV     ++E +
Sbjct: 215 CVVLNAETLANITRAVEDRKPVIDKDITLMGKLKK---------GIEPHV----FLQEPI 261

Query: 259 SITFDELIEKHCGGIRGGWDNLL 281
             +  ++IE  CGGI G +  ++
Sbjct: 262 GKSMKDMIEI-CGGIDGEYGEII 283


>gi|330881185|gb|EGH15334.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 78

 Score = 36.2 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 35 ILEKGRDWIINEVKASGLRGRGGAGFSTG 63
          + ++  D I+  VK SGL+GRGGAGF TG
Sbjct: 50 LTQQSPDDIVQSVKDSGLKGRGGAGFPTG 78


>gi|288935201|ref|YP_003439260.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           variicola At-22]
 gi|288889910|gb|ADC58228.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           variicola At-22]
          Length = 719

 Score = 36.2 bits (82), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           + R+ +I  +   G+ G GGAGF TG K     +   D+   L++NA E EP    D  +
Sbjct: 130 RTREALIERIHQFGVAGLGGAGFPTGSKL----RGGGDKIKTLIINAAECEPYITADDRL 185

Query: 98  MRHEPHTLIEGCVI 111
           M+     +++G  I
Sbjct: 186 MQDCAAQIVDGIRI 199


>gi|310829669|ref|YP_003962026.1| phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
           [Eubacterium limosum KIST612]
 gi|308741403|gb|ADO39063.1| phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
           [Eubacterium limosum KIST612]
          Length = 567

 Score = 36.2 bits (82), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 41/86 (47%)

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172
           +FA G   ++ Y+ G + R+++++ A+   C  +          YD    ++   G +I 
Sbjct: 390 TFAFGYEESYGYLAGNYARDKDAVLASALVCEMADYYKKQGMTLYDALEGLYQKFGYFIE 449

Query: 173 GEETALLESLEGKKGQPRLKPPFPAN 198
           G ++  LE +EGKK    +   F AN
Sbjct: 450 GIQSMTLEGIEGKKQIANIMEKFRAN 475


Searching..................................................done


Results from round 2




>gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040535|gb|ACT57331.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 425

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 425/425 (100%), Positives = 425/425 (100%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF
Sbjct: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC
Sbjct: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG
Sbjct: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH
Sbjct: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420

Query: 421 RCNFQ 425
           RCNFQ
Sbjct: 421 RCNFQ 425


>gi|163759536|ref|ZP_02166621.1| nadh dehydrogenase i chain f transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162283133|gb|EDQ33419.1| nadh dehydrogenase i chain f transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 435

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 332/421 (78%), Positives = 374/421 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG+  KSL  +M+RGHWD    ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGVYDKSLKGAMARGHWDGTKGILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+NADESEPGTCKDRDIMRH+PHTLIEGCVIA FA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVINADESEPGTCKDRDIMRHDPHTLIEGCVIAGFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IYVRGE++RERE+LQAA+DECY +GLLG NSKLGYD+D+ VHHGAGAYICGEETALLE
Sbjct: 121 TYIYVRGEYMREREALQAAIDECYEAGLLGKNSKLGYDMDVYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGIGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE+MSI F ELI+ HCGGIRGGWDNLLAVIPGGSSVP +P   +  
Sbjct: 241 LFCVSGHVNTPCTVEEAMSIPFRELIDTHCGGIRGGWDNLLAVIPGGSSVPLVPGADIVD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+++ SGLGTAAVIVMD+STD++KAIWRLS FYKHESCGQCTPCREGTGWMMR
Sbjct: 301 TPMDFDSLRDLKSGLGTAAVIVMDKSTDVVKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM+R+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI++FRP +E RIDQY 
Sbjct: 361 VMDRMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEMEARIDQYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|315122721|ref|YP_004063210.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496123|gb|ADR52722.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 424

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 385/424 (90%), Positives = 401/424 (94%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYGL+GKSL +SM+RGHWD  D IL KGRDWII+EVKASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGLKGKSLDESMARGHWDGTDNILGKGRDWIISEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK CSDRPHYLVVNADESEPGTCKDRDIMRHEPH LIEGCVIASFAIGAHC
Sbjct: 61  STGMKWSFMPKTCSDRPHYLVVNADESEPGTCKDRDIMRHEPHVLIEGCVIASFAIGAHC 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            FIYVRGEFIRERESLQ AVDECYA GLLG NSKLGYDVDIIVHHGAGAYICGEETALLE
Sbjct: 121 VFIYVRGEFIRERESLQTAVDECYARGLLGRNSKLGYDVDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAVVPTILRRGASWYS FGRENNRGTK
Sbjct: 181 SLEGKKGLPRLKPPFPANMGLYGCPTTVNNVESIAVVPTILRRGASWYSSFGRENNRGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL   QMRG
Sbjct: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLTGDQMRG 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMDYD LK MGSGLGTAAVIVMDRSTDII+AIWRLSVFYKHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDYDSLKAMGSGLGTAAVIVMDRSTDIIRAIWRLSVFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER+V+G+AQK EID+L+EVSKNIEGRTICALGDAAAWPIQGLIKNFR ++EERIDQY+
Sbjct: 361 LMERMVRGVAQKHEIDMLFEVSKNIEGRTICALGDAAAWPIQGLIKNFRHVMEERIDQYN 420

Query: 421 RCNF 424
             +F
Sbjct: 421 VHHF 424


>gi|110633381|ref|YP_673589.1| NADH dehydrogenase I subunit F [Mesorhizobium sp. BNC1]
 gi|110284365|gb|ABG62424.1| NADH dehydrogenase subunit F [Chelativorans sp. BNC1]
          Length = 434

 Score =  568 bits (1465), Expect = e-160,   Method: Composition-based stats.
 Identities = 334/421 (79%), Positives = 375/421 (89%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG   +SL  +M+RGHWD    ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGQFDRSLHGAMARGHWDGTKAILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  +DRPHYLVVNADESEPGTCKDRDI+RHEPHTL+EGC+IA FA+GAH 
Sbjct: 61  PTGLKWSFMPKAPTDRPHYLVVNADESEPGTCKDRDILRHEPHTLVEGCLIAGFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQAA+DECYA GLLG N+  G+D D+IVHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQAAIDECYAHGLLGKNNIHGWDFDVIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FGRENN+GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRENNKGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+  
Sbjct: 241 LFCISGHVNNPCTVEEEMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+++ SGLGTAAVIVMD+STDI+KAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDSLRDLKSGLGTAAVIVMDKSTDIVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLV+G A K EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP IE RID++ 
Sbjct: 361 VMERLVRGEAHKHEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIDEFT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|150396117|ref|YP_001326584.1| NADH dehydrogenase I subunit F [Sinorhizobium medicae WSM419]
 gi|150027632|gb|ABR59749.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium medicae
           WSM419]
          Length = 434

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 351/421 (83%), Positives = 386/421 (91%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL  KSL  +M+RGHWD   + LEKGRDWIINEVKASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNIYGLMDKSLKGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQAA+DECYA GLLG N+KLGYD+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQAAIDECYAYGLLGKNNKLGYDIDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WY+ FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNNHGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGHVN PCTVE++MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+P  QM+ 
Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y 
Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|328543691|ref|YP_004303800.1| Nadh dehydrogenase i chain f transmembrane protein [polymorphum
           gilvum SL003B-26A1]
 gi|326413435|gb|ADZ70498.1| Nadh dehydrogenase i chain f transmembrane protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 433

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 318/419 (75%), Positives = 361/419 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YGL    L  +  RGHWDN   +++KGRDWI+ E+K+SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNIYGLHDWGLEGARKRGHWDNTKALIDKGRDWIVEEMKSSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA  
Sbjct: 61  PTGLKWSFMPKASDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGRNNKNGYDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G G+ NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGKPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE + I F ELI++HCGGIRGGWDNLLAVIPGGSSVPCL A Q++ 
Sbjct: 241 LFCISGHVNRPCTVEEELGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPCLTADQVKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+ +GSGLGTAAVIVMD+STDIIKAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 VPMDFDTLRGLGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM+R+V+G A K EID+L+ V+K +EG TICALGDAAAWPIQGLIKNFR +IEERID Y
Sbjct: 361 VMDRMVQGNASKEEIDMLFTVTKQVEGHTICALGDAAAWPIQGLIKNFRHVIEERIDDY 419


>gi|15965023|ref|NP_385376.1| NADH dehydrogenase I subunit F [Sinorhizobium meliloti 1021]
 gi|307301095|ref|ZP_07580864.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           BL225C]
 gi|307317829|ref|ZP_07597267.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           AK83]
 gi|7387963|sp|P56912|NUOF1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit F 1; AltName:
           Full=NADH dehydrogenase I subunit F 1; AltName:
           Full=NDH-1 subunit F 1
 gi|5650740|emb|CAB51626.1| nuoF1 [Sinorhizobium meliloti]
 gi|15074202|emb|CAC45849.1| NADH-quinone oxidoreductase subunit F 1 [Sinorhizobium meliloti
           1021]
 gi|306896591|gb|EFN27339.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           AK83]
 gi|306904050|gb|EFN34636.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           BL225C]
          Length = 434

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 350/421 (83%), Positives = 386/421 (91%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +M+RGHWD   + LEKGRDWIINEVKASGLRGRGGAGF
Sbjct: 1   MLRDEDRIFTNIYGLKDKSLRGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQAA+DECY  GLLG N+KLGYD+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQAAIDECYEYGLLGKNNKLGYDIDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WY+ FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGRPNNHGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGHVN PCTVE++MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+P  QM+ 
Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIEKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y 
Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|227821623|ref|YP_002825593.1| NADH dehydrogenase I subunit F [Sinorhizobium fredii NGR234]
 gi|227340622|gb|ACP24840.1| NADH-quinone oxidoreductase chain F 1 [Sinorhizobium fredii NGR234]
          Length = 434

 Score =  565 bits (1456), Expect = e-159,   Method: Composition-based stats.
 Identities = 347/421 (82%), Positives = 385/421 (91%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +M+RGHWD    +LEKGRDWIINEVKASGLRGRGGAGF
Sbjct: 1   MLRDEDRIFTNIYGLKDKSLKGAMARGHWDGTKALLEKGRDWIINEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMAANT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQAA+DECY  GLLG N+KLGYD+D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQAAIDECYEYGLLGKNNKLGYDIDVFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA WYS FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYSSFGRPNNHGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGHVN PCTVE++MSI F ELI+KHCGGIRGGWDNLLAVIPGGSSVPC+P  QM+ 
Sbjct: 241 LYSVSGHVNRPCTVEDAMSIPFHELIDKHCGGIRGGWDNLLAVIPGGSSVPCVPGAQMKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMDYDGL+E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDYDGLRELGSGLGTAAVIVMDKSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V+G AQKREID+L++V+K +EG TICALGDAAAWPIQGLIK+FRP +E+RID+Y 
Sbjct: 361 VMERMVQGRAQKREIDMLFDVTKQVEGHTICALGDAAAWPIQGLIKHFRPEMEQRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|222148279|ref|YP_002549236.1| NADH dehydrogenase I subunit F [Agrobacterium vitis S4]
 gi|221735267|gb|ACM36230.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4]
          Length = 434

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 332/421 (78%), Positives = 370/421 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PHTL+EGCVIA FA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREIMRHDPHTLLEGCVIAGFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE++RERE+LQAA+DECY  GLLG N+KLG+D DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYMREREALQAAIDECYEYGLLGKNNKLGWDYDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSFGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE+M ITF ELIE+H GGIRGGWDNLLAVIPGG+S P + A  +  
Sbjct: 241 LFMISGHVNKPCTVEETMGITFRELIERHAGGIRGGWDNLLAVIPGGASCPVVKAEDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+++ S  GTAA+IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 VPMDFDGLRDVKSSFGTAAIIVMDKSTDIIKAIARLSQFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE RID Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEARIDDYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|118590033|ref|ZP_01547437.1| NADH-ubiquinone dehydrogenase chain F 1 [Stappia aggregata IAM
           12614]
 gi|118437530|gb|EAV44167.1| NADH-ubiquinone dehydrogenase chain F 1 [Stappia aggregata IAM
           12614]
          Length = 433

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 316/419 (75%), Positives = 360/419 (85%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YGL    L  +  RG WDN   +++KGRDWII E+K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNIYGLHDWGLEGAKKRGQWDNTKGLIDKGRDWIIQEMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A +A+GA  
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGYAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSALGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN P T EE + I+F E+I+KHCGGIRGGWDNLLAVIPGGSSVPCL A Q++ 
Sbjct: 241 LFCVSGHVNKPSTFEEELGISFAEMIDKHCGGIRGGWDNLLAVIPGGSSVPCLTAEQIKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ +GSGLGTAAVIVMD+STDIIKAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDTLRGLGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+V+G +   EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RID Y
Sbjct: 361 VMERMVRGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEQRIDDY 419


>gi|149202664|ref|ZP_01879636.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. TM1035]
 gi|149143946|gb|EDM31980.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. TM1035]
          Length = 431

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 321/418 (76%), Positives = 365/418 (87%), Gaps = 1/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL  +++RGHWD   KIL+ GRDWI+N++KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRSLKGALARGHWDGTAKILQNGRDWIVNQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQ A+DE YA+GL+G N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQTAIDEAYAAGLVGKNACKSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+SGFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSGFGRPNNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCIRGEFMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 EAIMDFDYLREQRSGLGTAAVIVMDKSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVM+RLV+G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI 
Sbjct: 361 RVMDRLVRGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIK 418


>gi|83953906|ref|ZP_00962627.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. NAS-14.1]
 gi|83841851|gb|EAP81020.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. NAS-14.1]
          Length = 431

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 317/421 (75%), Positives = 362/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD    IL+ GRDWII+++KASGLRGRGGAGF
Sbjct: 1   MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVP +P  QMR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPMIPGAQMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV+G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI   
Sbjct: 361 RVMDRLVRGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|83942667|ref|ZP_00955128.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. EE-36]
 gi|83846760|gb|EAP84636.1| NADH-quinone oxidoreductase, F subunit [Sulfitobacter sp. EE-36]
          Length = 431

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 315/421 (74%), Positives = 361/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD    IL+ GRDWII+++KASGLRGRGGAGF
Sbjct: 1   MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQTAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSITF+ELIEKHCGGIRGGWDNL AVIPGGSSVP +P  QMR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSITFEELIEKHCGGIRGGWDNLKAVIPGGSSVPMIPGAQMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAA+IVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAIIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV+G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI   
Sbjct: 361 RVMDRLVRGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|222085581|ref|YP_002544111.1| NADH-quinone oxidoreductase, F subunit [Agrobacterium radiobacter
           K84]
 gi|221723029|gb|ACM26185.1| NADH-quinone oxidoreductase, F subunit [Agrobacterium radiobacter
           K84]
          Length = 434

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 327/419 (78%), Positives = 370/419 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG + KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDQDRIFTNIYGHKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIA FA+GA+ 
Sbjct: 61  PTGLKWSFMPKENDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIAGFAMGANT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE++RERE+LQAA+DECY +GLLG N+KLG+D D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKLGWDYDVYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSFGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE+M ITF EL++KH GGIRGGWDNLLAVIPGG+S P +PA  +  
Sbjct: 241 LFMLSGHVNRPCTVEETMGITFRELVDKHAGGIRGGWDNLLAVIPGGASCPIVPAADIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+E+ S  GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 CPMDFDGLREVKSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY
Sbjct: 361 VLERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419


>gi|110680462|ref|YP_683469.1| NADH dehydrogenase I subunit F [Roseobacter denitrificans OCh 114]
 gi|109456578|gb|ABG32783.1| NADH-quinone oxidoreductase chain F [Roseobacter denitrificans OCh
           114]
          Length = 431

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 311/421 (73%), Positives = 360/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD  D I++KGRDWI++++KASGLRGRGGAGF
Sbjct: 1   MLNDQDRIFTNIYGMHDRTLKGAQARGHWDGTDAIIKKGRDWIVDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+   G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAGSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNL AVIPGGSSVP +P   M+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLKAVIPGGSSVPLIPGKDMK 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI   
Sbjct: 361 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|86357243|ref|YP_469135.1| NADH dehydrogenase I subunit F [Rhizobium etli CFN 42]
 gi|86281345|gb|ABC90408.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN
           42]
          Length = 434

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 327/419 (78%), Positives = 370/419 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA  +  
Sbjct: 241 LFMLSGHVNRPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+ +GS  GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +MER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY
Sbjct: 361 LMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419


>gi|84516731|ref|ZP_01004089.1| NADH-quinone oxidoreductase, F subunit [Loktanella vestfoldensis
           SKA53]
 gi|84509199|gb|EAQ05658.1| NADH-quinone oxidoreductase, F subunit [Loktanella vestfoldensis
           SKA53]
          Length = 428

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 319/421 (75%), Positives = 360/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  + +RGHWD    I++KGRDWI+NE+KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRTLKGAQARGHWDGTADIIKKGRDWIVNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE YA+GL+G N+ K G+D +I + HGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYAAGLVGKNACKSGWDFEIYLTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG +W+SGFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGAWFSGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE MSI F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEEMSIPFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D LKE GS LGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDALKEKGSSLGTAAVIVMDNSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLV+G A   EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR  IE+RI   
Sbjct: 361 RVMARLVEGNASVDEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRDEIEDRIKHK 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|190891291|ref|YP_001977833.1| NADH-ubiquinone oxidoreductase, chain F [Rhizobium etli CIAT 652]
 gi|190696570|gb|ACE90655.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli
           CIAT 652]
          Length = 434

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 328/419 (78%), Positives = 370/419 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA  +  
Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+ +GS  GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY
Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419


>gi|85703201|ref|ZP_01034305.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. 217]
 gi|85672129|gb|EAQ26986.1| NADH-quinone oxidoreductase, F subunit [Roseovarius sp. 217]
          Length = 431

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 317/418 (75%), Positives = 363/418 (86%), Gaps = 1/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL  +++RGHWD   KIL+ GRDWI+N++KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRSLKGALARGHWDGTAKILQNGRDWIVNQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQ A+DE YA+GL+G N+ K G+D DI + HGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQVAIDEAYAAGLVGKNACKSGWDFDIYLAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCIRGEHMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD+STD+I+AIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 EAIMDFDYLREQRSGLGTAAVIVMDKSTDMIRAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVM+RLV+G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI 
Sbjct: 361 RVMDRLVRGDAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIK 418


>gi|116251471|ref|YP_767309.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241204092|ref|YP_002975188.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115256119|emb|CAK07200.1| putative NADH-quinone oxidoreductase subunit F [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240857982|gb|ACS55649.1| NADH-quinone oxidoreductase, F subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 434

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 329/419 (78%), Positives = 370/419 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA  +  
Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+ +GS  GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY
Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419


>gi|304391405|ref|ZP_07373347.1| NADH oxidoreductase (quinone), f subunit [Ahrensia sp. R2A130]
 gi|303295634|gb|EFL89992.1| NADH oxidoreductase (quinone), f subunit [Ahrensia sp. R2A130]
          Length = 434

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 324/419 (77%), Positives = 367/419 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL  KSL  +MSRGHW    + +  GRDW+IN+ KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLHDKSLKGAMSRGHWSETKQFIANGRDWVINQTKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  S+RPHYLV+NADESEPGTCKDRDIMRH+PHTLIEGCV+A FA+GAH 
Sbjct: 61  PTGLKWSFMPKEESERPHYLVINADESEPGTCKDRDIMRHDPHTLIEGCVLAGFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IYVRGE++RERE+L+AA+DECY +GLLG N+K G+D DI V HGAGAYICGEETALLE
Sbjct: 121 CYIYVRGEYMREREALEAAIDECYEAGLLGKNNKNGWDYDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES+AVVPTILRRG  W++GFG ENNRGTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESVAVVPTILRRGPEWFAGFGAENNRGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PCTVEE+MSI F ELIEKHCGGIRGGWDNLLAVIPGGSSV  +PA QM  
Sbjct: 241 LFCISGHVERPCTVEEAMSIPFRELIEKHCGGIRGGWDNLLAVIPGGSSVRMVPAEQMID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L ++ SGLGTAAVIVMD+ TDII+AI RL+ FYKHESCGQCTPCREGTGWM R
Sbjct: 301 TPMDFDSLSKLKSGLGTAAVIVMDKETDIIRAIARLAAFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+V+G AQKREID+L++V+K IEG TICALGDAAAWPIQGLI +FRP +E+RID+Y
Sbjct: 361 VMERMVEGRAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLITHFRPEMEKRIDEY 419


>gi|163732058|ref|ZP_02139504.1| NADH-quinone oxidoreductase chain F [Roseobacter litoralis Och 149]
 gi|161394356|gb|EDQ18679.1| NADH-quinone oxidoreductase chain F [Roseobacter litoralis Och 149]
          Length = 431

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 311/421 (73%), Positives = 360/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD  D I++KGRDWI++++KASGLRGRGGAGF
Sbjct: 1   MLNDQDRIFTNIYGMHDRTLKGAQARGHWDGTDAIIKKGRDWIVDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+   G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAGSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGW NL AVIPGGSSVP +P  QM+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWGNLKAVIPGGSSVPMIPGAQMK 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI   
Sbjct: 361 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|254469558|ref|ZP_05082963.1| NADH oxidoreductase (quinone), F subunit [Pseudovibrio sp. JE062]
 gi|211961393|gb|EEA96588.1| NADH oxidoreductase (quinone), F subunit [Pseudovibrio sp. JE062]
          Length = 433

 Score =  558 bits (1439), Expect = e-157,   Method: Composition-based stats.
 Identities = 322/426 (75%), Positives = 363/426 (85%), Gaps = 3/426 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTN+YGL    L  +  RG W    +I+EKGRDWII+E+K SGLRGRGGAGF
Sbjct: 1   MLNDSDRIFTNIYGLHDWGLEGARQRGSWSGTKEIIEKGRDWIIDEMKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC++A FA+GA  
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLAGFAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAV PTIL+RG +W+SG GRENN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVAPTILKRGGAWFSGIGRENNAGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE+M I+F ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    +R 
Sbjct: 241 LFCVSGHVNKPCTVEEAMGISFKELIEKHCGGIRGGWDNLLAVIPGGSSVPCVKGEDIRD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+DGL+E+GS LGTAAVIVMD STDIIKAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 AKMDFDGLREVGSSLGTAAVIVMDNSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419
           VMER+VKG +   EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RIDQY 
Sbjct: 361 VMERMVKGESSYDEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEDRIDQYV 420

Query: 420 --HRCN 423
             HR  
Sbjct: 421 AKHRTP 426


>gi|254486414|ref|ZP_05099619.1| NADH oxidoreductase (quinone), F subunit [Roseobacter sp. GAI101]
 gi|214043283|gb|EEB83921.1| NADH oxidoreductase (quinone), F subunit [Roseobacter sp. GAI101]
          Length = 431

 Score =  558 bits (1438), Expect = e-157,   Method: Composition-based stats.
 Identities = 311/421 (73%), Positives = 358/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD    IL+ GRDWII+++KASGLRGRGGAGF
Sbjct: 1   MLQDQDRIFTNIYGMHDRTLKGAQARGHWDGTAGILKNGRDWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIASFAMQANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNACKSGYDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGW NL AVIPGGSSVP +P  QM+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWSNLKAVIPGGSSVPMIPGAQMK 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV G A   EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI   
Sbjct: 361 RVMDRLVTGDANPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|209548868|ref|YP_002280785.1| NADH dehydrogenase I subunit F [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534624|gb|ACI54559.1| NADH-quinone oxidoreductase, F subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 434

 Score =  558 bits (1438), Expect = e-157,   Method: Composition-based stats.
 Identities = 328/419 (78%), Positives = 370/419 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWDNLLAVIPGG+S P +PA  +  
Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+DGL+ +GS  GTAA IVMD+STD+IKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 CPMDFDGLRGVGSSFGTAAAIVMDKSTDVIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+ KG AQKREID+L++V+K IEG TICALGDAAAWP+QGLI+NFRP IE+RIDQY
Sbjct: 361 VMERMAKGNAQKREIDMLFQVTKQIEGHTICALGDAAAWPVQGLIRNFRPEIEKRIDQY 419


>gi|114771823|ref|ZP_01449216.1| NADH-quinone oxidoreductase, F subunit [alpha proteobacterium
           HTCC2255]
 gi|114547639|gb|EAU50530.1| NADH-quinone oxidoreductase, F subunit [alpha proteobacterium
           HTCC2255]
          Length = 431

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 307/421 (72%), Positives = 353/421 (83%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  +SL  + SRGHW    KI++ G DWII+E+K SGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNLYGMHDRSLRGAQSRGHWSETAKIIKNGHDWIIDEMKNSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMR++PH LIEG +IASFA+ ++ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRNDPHALIEGALIASFAMSSNA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEFIRERE+LQ A+DECY +GLLG N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEFIREREALQLAIDECYDAGLLGKNAAKSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+  FGRENN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGDWFKSFGRENNYGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI   EL+++HCGG+RGGW NL AVIPGGSSVP LPA    
Sbjct: 241 KLFAISGHVNNPCVVEEAMSIPLQELLDRHCGGVRGGWKNLKAVIPGGSSVPLLPADICS 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD++TDIIKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDWLREQRSGLGTAAVIVMDQNTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLVKG A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI   
Sbjct: 361 RVMDRLVKGDAEPDEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|149914585|ref|ZP_01903115.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. AzwK-3b]
 gi|149811378|gb|EDM71213.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. AzwK-3b]
          Length = 431

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 315/421 (74%), Positives = 363/421 (86%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  +SL  +M+RGHWD   KIL+ GR+WII+++KASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNLYGMHDRSLKGAMARGHWDGTAKILQNGREWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IAS+A+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASYAMKAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQTAIDEAYDAGLIGKNACKSGYDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAV PTILRRG  W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAMAGLYGCPTTVNNVESIAVAPTILRRGPEWFAGFGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F+ISGHVN PC VEESMSI+F+ELI+KHCGGIRGGW NL AVIPGGSSVPC+    MR
Sbjct: 241 KIFAISGHVNAPCVVEESMSISFEELIDKHCGGIRGGWSNLKAVIPGGSSVPCVHGENMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MD+D LKE GS LGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAVMDFDALKEKGSSLGTAAVIVMDQSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI   
Sbjct: 361 RVMDRLVRGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKAQ 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|254501883|ref|ZP_05114034.1| NADH oxidoreductase (quinone), F subunit [Labrenzia alexandrii
           DFL-11]
 gi|222437954|gb|EEE44633.1| NADH oxidoreductase (quinone), F subunit [Labrenzia alexandrii
           DFL-11]
          Length = 433

 Score =  556 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 313/419 (74%), Positives = 356/419 (84%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL    L  +  RG WDN   +L+KGRDWII E+K SGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLHDWGLEGAKKRGQWDNTKGLLDKGRDWIIQEMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA  
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG  W++  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGGWFASLGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN P T EE + + F E+I+KHCGGIRGGWDNLLAVIPGGSSVPC  A +++ 
Sbjct: 241 LFCVSGHVNQPATFEEELGVPFSEMIDKHCGGIRGGWDNLLAVIPGGSSVPCCTADEIKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ MGSGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDTLRGMGSGLGTAAVIVMDKSTDVIKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VMER+VKG +   EID+L++V+K +EG TICALGDAAAWPIQGLIKNFRP+IE+RID Y
Sbjct: 361 VMERMVKGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIKNFRPVIEQRIDDY 419


>gi|170039879|ref|XP_001847747.1| NADH dehydrogenase flavoprotein 1, mitochondrial [Culex
           quinquefasciatus]
 gi|167863468|gb|EDS26851.1| NADH dehydrogenase flavoprotein 1, mitochondrial [Culex
           quinquefasciatus]
          Length = 474

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 273/421 (64%), Positives = 328/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL KG +WIINE KASGLRGRGGAGF 
Sbjct: 48  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTEWIINETKASGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA   +GA  A
Sbjct: 108 TGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRCMGARAA 167

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 168 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 228 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGAWFASFGRTRNSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL +IPGGSS P +P      
Sbjct: 288 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLGIIPGGSSTPIIPKSVCDD 347

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 348 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGIAWMHK 407

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ ++ 
Sbjct: 408 MMHRFVDGNARPDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKHE 467

Query: 421 R 421
           +
Sbjct: 468 Q 468


>gi|114707373|ref|ZP_01440270.1| NADH-ubiquinone oxidoreductase chain F protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537254|gb|EAU40381.1| NADH-ubiquinone oxidoreductase chain F protein [Fulvimarina pelagi
           HTCC2506]
          Length = 434

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 323/421 (76%), Positives = 373/421 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +M RGH+D   +I+EKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGLRDKSLKAAMKRGHFDGTKEIVEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  + RPHYLVVNADESEPGTCKDR+IMR++P TLIEGC+IA FA+GAH 
Sbjct: 61  PTGLKWSFMPKESAGRPHYLVVNADESEPGTCKDREIMRNDPFTLIEGCLIAGFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGE+IRERE+LQ AVDECY  GLLG+++K G+D DI+VHHGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEYIREREALQKAVDECYEEGLLGADNKCGWDFDIVVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA W++G GRENN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAGWFAGIGRENNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PCTVEE+MSI+F ELI+KHCGG+RGGWDNLLAVIPGGSSVP +PA  +  
Sbjct: 241 LFCISGHVEQPCTVEEAMSISFRELIDKHCGGVRGGWDNLLAVIPGGSSVPLVPAKDIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+DGLK++ + LGTAAVIVMD+STDI+KAI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDGLKDIKTSLGTAAVIVMDKSTDIVKAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V G A+K EID+L +V+K +EG TICALGDAAAWPIQGL+++FRP IE RID++ 
Sbjct: 361 VMERMVVGNAKKSEIDMLLQVTKQVEGHTICALGDAAAWPIQGLMRHFRPEIERRIDEFS 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|325292639|ref|YP_004278503.1| NADH dehydrogenase I chain F [Agrobacterium sp. H13-3]
 gi|325060492|gb|ADY64183.1| NADH dehydrogenase I chain F [Agrobacterium sp. H13-3]
          Length = 434

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 316/419 (75%), Positives = 365/419 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYGL+ KSL    +RGHWD   +I+EKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGLKDKSLKGVRARGHWDGTKQIIEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+R++PHTLIEGCVIA FA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREILRNDPHTLIEGCVIAGFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE++RERE+LQAA+DECY +GLLG N+K G+D DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKNGWDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHV  PCT E+++ ++F ELIE HCGGIRGGWDNLL VIPGG+S P +    M+ 
Sbjct: 241 LFMVSGHVERPCTFEDALGLSFRELIEHHCGGIRGGWDNLLGVIPGGASCPIVRGEDMKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++E+ S  GT  +IVMD+STD+IKAI R++ F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AIMDFDGMREVKSSFGTGGMIVMDKSTDVIKAIARIAAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ER+VKG AQKREID+L+EV+K IEG TICALGDAAAWP+Q LI+NFRP IE+RIDQY
Sbjct: 361 VLERMVKGNAQKREIDMLFEVTKQIEGHTICALGDAAAWPVQALIRNFRPEIEKRIDQY 419


>gi|83951746|ref|ZP_00960478.1| NADH-quinone oxidoreductase, F subunit [Roseovarius nubinhibens
           ISM]
 gi|83836752|gb|EAP76049.1| NADH-quinone oxidoreductase, F subunit [Roseovarius nubinhibens
           ISM]
          Length = 431

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 321/421 (76%), Positives = 366/421 (86%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  +SL  + +RGHWD    IL KGRDWII+ +KASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNLYGMHDRSLKGAQARGHWDGTAGILAKGRDWIIDNMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GL+G N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYEAGLVGKNACKSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    M+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMK 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E+GS LGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDALREVGSSLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLVKG A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR +IE+RI   
Sbjct: 361 RVMDRLVKGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDVIEDRIKAQ 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|312116350|ref|YP_004013946.1| NADH-quinone oxidoreductase, F subunit [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221479|gb|ADP72847.1| NADH-quinone oxidoreductase, F subunit [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 430

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 299/420 (71%), Positives = 350/420 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+D+DRIF NLYG     L  +  RG WDN   ILEKG+DWII E+KASGLRGRGGAGF
Sbjct: 1   MLSDKDRIFKNLYGQHDWGLKGARERGAWDNTKAILEKGQDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PH LIEG +I +FA+ A+ 
Sbjct: 61  STGMKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIIRHDPHLLIEGSLIGAFAMRANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGEFIRER+ LQAA+D+ Y + L+G ++  G+D DI VHHGAGAYICGEETA LE
Sbjct: 121 VYIYIRGEFIRERQRLQAAIDQAYEARLIGKDNINGWDCDIYVHHGAGAYICGEETAQLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGKKGQPRLKPPFPAN GL+G PTTVNNVESIAVVP ILRRGA+W++  G+ NN GTK
Sbjct: 181 SIEGKKGQPRLKPPFPANAGLWGAPTTVNNVESIAVVPDILRRGAAWFAALGKPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PC VEE M I+F EL++KH GG+RGGWDNLLA+IPGGSSVPC+PA     
Sbjct: 241 LFCISGHVERPCNVEEEMGISFRELVDKHAGGVRGGWDNLLAIIPGGSSVPCVPAHMCND 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+++GSGLGTAAVIVMD+STDI+KAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 LGMDFDSLRKVGSGLGTAAVIVMDKSTDIVKAISRLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V+G A+  EID+L++VSK IEG TICALGDAAAWP+QGLI++FR  +E RID +H
Sbjct: 361 VMERMVEGRAEHAEIDMLWDVSKQIEGHTICALGDAAAWPVQGLIRHFRHEMEARIDAFH 420


>gi|255262502|ref|ZP_05341844.1| NADH oxidoreductase (quinone), f subunit [Thalassiobium sp. R2A62]
 gi|255104837|gb|EET47511.1| NADH oxidoreductase (quinone), f subunit [Thalassiobium sp. R2A62]
          Length = 429

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 317/422 (75%), Positives = 365/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG+  +SL  +  RGHWD   KI++ GRDWII+++KASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNIYGMHDRSLKGAQKRGHWDGTAKIIKNGRDWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE Y +GL+G N +K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAKTGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+    M+
Sbjct: 241 KLFAISGHVNNPCVVEEEMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGEHMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDQSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLVKG A   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVKGDADPEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIAH 420

Query: 419 YH 420
             
Sbjct: 421 KR 422


>gi|256159529|ref|ZP_05457297.1| NADH dehydrogenase I subunit F [Brucella ceti M490/95/1]
 gi|256254816|ref|ZP_05460352.1| NADH dehydrogenase I subunit F [Brucella ceti B1/94]
 gi|261221997|ref|ZP_05936278.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
 gi|265997961|ref|ZP_06110518.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
 gi|260920581|gb|EEX87234.1| NADH-quinone oxidoreductase [Brucella ceti B1/94]
 gi|262552429|gb|EEZ08419.1| NADH-quinone oxidoreductase [Brucella ceti M490/95/1]
          Length = 435

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 320/421 (76%), Positives = 365/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAVGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|161618771|ref|YP_001592658.1| NADH dehydrogenase I subunit F [Brucella canis ATCC 23365]
 gi|163843080|ref|YP_001627484.1| NADH dehydrogenase I subunit F [Brucella suis ATCC 23445]
 gi|254704122|ref|ZP_05165950.1| NADH dehydrogenase I subunit F [Brucella suis bv. 3 str. 686]
 gi|260566629|ref|ZP_05837099.1| respiratory-chain NADH dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|261754788|ref|ZP_05998497.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
 gi|161335582|gb|ABX61887.1| NADH-quinone oxidoreductase, F subunit [Brucella canis ATCC 23365]
 gi|163673803|gb|ABY37914.1| NADH-quinone oxidoreductase, F subunit [Brucella suis ATCC 23445]
 gi|260156147|gb|EEW91227.1| respiratory-chain NADH dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|261744541|gb|EEY32467.1| NADH-quinone oxidoreductase [Brucella suis bv. 3 str. 686]
          Length = 435

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 320/421 (76%), Positives = 364/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREVLQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|148559285|ref|YP_001258785.1| NADH dehydrogenase I subunit F [Brucella ovis ATCC 25840]
 gi|254701575|ref|ZP_05163403.1| NADH dehydrogenase I subunit F [Brucella suis bv. 5 str. 513]
 gi|254706978|ref|ZP_05168806.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis M163/99/10]
 gi|254709915|ref|ZP_05171726.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis B2/94]
 gi|254713916|ref|ZP_05175727.1| NADH dehydrogenase I subunit F [Brucella ceti M644/93/1]
 gi|254717026|ref|ZP_05178837.1| NADH dehydrogenase I subunit F [Brucella ceti M13/05/1]
 gi|254718916|ref|ZP_05180727.1| NADH dehydrogenase I subunit F [Brucella sp. 83/13]
 gi|256031408|ref|ZP_05445022.1| NADH dehydrogenase I subunit F [Brucella pinnipedialis M292/94/1]
 gi|256369239|ref|YP_003106747.1| NADH dehydrogenase I, F subunit [Brucella microti CCM 4915]
 gi|261218833|ref|ZP_05933114.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
 gi|261314441|ref|ZP_05953638.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
 gi|261317461|ref|ZP_05956658.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
 gi|261321668|ref|ZP_05960865.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
 gi|261752128|ref|ZP_05995837.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
 gi|265983903|ref|ZP_06096638.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
 gi|265988497|ref|ZP_06101054.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
 gi|294852164|ref|ZP_06792837.1| NADH oxidoreductase [Brucella sp. NVSL 07-0026]
 gi|306838236|ref|ZP_07471088.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. NF 2653]
 gi|306841955|ref|ZP_07474632.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO2]
 gi|306843744|ref|ZP_07476343.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO1]
 gi|148370542|gb|ABQ60521.1| NADH oxidoreductase (quinone), f subunit [Brucella ovis ATCC 25840]
 gi|255999399|gb|ACU47798.1| NADH dehydrogenase I, F subunit [Brucella microti CCM 4915]
 gi|260923922|gb|EEX90490.1| NADH-quinone oxidoreductase [Brucella ceti M13/05/1]
 gi|261294358|gb|EEX97854.1| NADH-quinone oxidoreductase [Brucella ceti M644/93/1]
 gi|261296684|gb|EEY00181.1| NADH-quinone oxidoreductase [Brucella pinnipedialis B2/94]
 gi|261303467|gb|EEY06964.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M163/99/10]
 gi|261741881|gb|EEY29807.1| NADH-quinone oxidoreductase [Brucella suis bv. 5 str. 513]
 gi|264660694|gb|EEZ30955.1| NADH-quinone oxidoreductase [Brucella pinnipedialis M292/94/1]
 gi|264662495|gb|EEZ32756.1| NADH-quinone oxidoreductase [Brucella sp. 83/13]
 gi|294820753|gb|EFG37752.1| NADH oxidoreductase [Brucella sp. NVSL 07-0026]
 gi|306275935|gb|EFM57648.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO1]
 gi|306287946|gb|EFM59357.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. BO2]
 gi|306406680|gb|EFM62907.1| NADH-quinone oxidoreductase, F subunit [Brucella sp. NF 2653]
          Length = 435

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 320/421 (76%), Positives = 365/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|256060919|ref|ZP_05451077.1| NADH dehydrogenase I subunit F [Brucella neotomae 5K33]
 gi|261324919|ref|ZP_05964116.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
 gi|261300899|gb|EEY04396.1| NADH-quinone oxidoreductase [Brucella neotomae 5K33]
          Length = 435

 Score =  554 bits (1429), Expect = e-156,   Method: Composition-based stats.
 Identities = 319/421 (75%), Positives = 365/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTI+RRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTIMRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|126727150|ref|ZP_01742987.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium
           HTCC2150]
 gi|126703578|gb|EBA02674.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium
           HTCC2150]
          Length = 433

 Score =  554 bits (1428), Expect = e-156,   Method: Composition-based stats.
 Identities = 309/421 (73%), Positives = 361/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L+ + +RGHWD    I++KGRDWI++E+KASGLRGRGGAGF
Sbjct: 3   MLADKDRIFTNLYGMHDRTLAGAKARGHWDGTAAIIKKGRDWIVDEMKASGLRGRGGAGF 62

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG ++ASFA+ A+ 
Sbjct: 63  PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALVASFAMNANT 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEFIRERE+LQ A+DE YA GLLG N+ K G+D D+ +HHGAGAYICGEETALL
Sbjct: 123 CYIYIRGEFIREREALQNAIDEAYADGLLGKNAAKSGWDFDLYLHHGAGAYICGEETALL 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG+KG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG+SW+ GFGR+NN GT
Sbjct: 183 ESLEGRKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGSSWFKGFGRDNNAGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSIT  EL++KHCGG+RGGW NL AVIPGGSSVP LPA   +
Sbjct: 243 KLFAISGHVNNPCVVEEAMSITLPELLDKHCGGVRGGWGNLKAVIPGGSSVPLLPADICK 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 303 DAIMDFDWLREQRSGLGTAAVIVMDQSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI   
Sbjct: 363 RVMDRLVTGEAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 422

Query: 420 H 420
            
Sbjct: 423 R 423


>gi|90417838|ref|ZP_01225750.1| NADH dehydrogenase I, F subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337510|gb|EAS51161.1| NADH dehydrogenase I, F subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 435

 Score =  554 bits (1428), Expect = e-156,   Method: Composition-based stats.
 Identities = 319/421 (75%), Positives = 363/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YGL+ KSL  +M RGH+D +  I+ KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLNDQDRIFTNIYGLRDKSLKGAMKRGHFDGIADIIGKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+NADESEPGTCKDR+IMR++P TLIEGCVIA FA+GA+ 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVINADESEPGTCKDREIMRNDPFTLIEGCVIAGFAMGANT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IYVRGE+IRER++LQ A+DECY +GLLG ++K G+D DIIVHHGAGAYICGEETALLE
Sbjct: 121 CYIYVRGEYIRERQALQRAIDECYEAGLLGRDNKCGWDYDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG  W++G GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGGWFAGLGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHV  PCTVEE M I F ELIEKHCGG+RGGWDNLLAVIPGGSSVP +PA  +  
Sbjct: 241 LYCISGHVEQPCTVEEEMGIPFRELIEKHCGGVRGGWDNLLAVIPGGSSVPLVPAADIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+DGL+E+ + LGTAAVIVMD+STDI+KAI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDGLREIKTSLGTAAVIVMDKSTDIVKAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+  G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR  IE RID Y 
Sbjct: 361 VMERMATGNAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLVRHFRAEIERRIDDYS 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|195030314|ref|XP_001988013.1| GH10936 [Drosophila grimshawi]
 gi|193904013|gb|EDW02880.1| GH10936 [Drosophila grimshawi]
          Length = 476

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 279/423 (65%), Positives = 330/423 (78%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +I+ KG DWIINEVK SGLRGRGGAGF 
Sbjct: 49  LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEVKTSGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA  A+GA  A
Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 168

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G ++   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKDACGTGYDFDVFMHRGAGAYICGEETALIE 228

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 289 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPKKVCDD 348

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLIHFYKHESCGQCTPCREGIGWMNK 408

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+  + 
Sbjct: 409 IMERFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 468

Query: 421 RCN 423
           +  
Sbjct: 469 QQP 471


>gi|302791665|ref|XP_002977599.1| hypothetical protein SELMODRAFT_443575 [Selaginella moellendorffii]
 gi|300154969|gb|EFJ21603.1| hypothetical protein SELMODRAFT_443575 [Selaginella moellendorffii]
          Length = 483

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 286/421 (67%), Positives = 339/421 (80%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG+    L  +M+RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 53  LKDEDRIFTNLYGIHDPFLKGAMARGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFP 112

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 113 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGCLIAGVGMRARAA 172

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER++L+ AV E YA+G +G N+   GYD DI VH GAGAYICGEETALLE
Sbjct: 173 YIYIRGEYVNERKNLERAVKEAYAAGYIGKNACGSGYDFDIHVHFGAGAYICGEETALLE 232

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 233 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 292

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 293 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDD 352

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 353 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWT 412

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER+  G A   EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI +  
Sbjct: 413 LMERMKVGNAYLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRILERA 472

Query: 421 R 421
           +
Sbjct: 473 K 473


>gi|195385529|ref|XP_002051457.1| GJ12140 [Drosophila virilis]
 gi|194147914|gb|EDW63612.1| GJ12140 [Drosophila virilis]
          Length = 476

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 277/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +I+ KG DWIINE+K SGLRGRGGAGF 
Sbjct: 49  LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 168

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GY+ D+ +H GAGAYICGEETAL+E
Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYNFDVFMHRGAGAYICGEETALIE 228

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 289 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPRKVCDD 348

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 408

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ 
Sbjct: 409 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQHA 468

Query: 421 R 421
           +
Sbjct: 469 Q 469


>gi|23501694|ref|NP_697821.1| NADH dehydrogenase I subunit F [Brucella suis 1330]
 gi|23347616|gb|AAN29736.1| NADH dehydrogenase I, F subunit [Brucella suis 1330]
          Length = 435

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 319/421 (75%), Positives = 363/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKG DWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGCDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREVLQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|15888604|ref|NP_354285.1| NADH dehydrogenase I subunit F [Agrobacterium tumefaciens str. C58]
 gi|15156324|gb|AAK87070.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens
           str. C58]
          Length = 434

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 318/419 (75%), Positives = 366/419 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYGL+ KSL   M+RGHWD   +I+EKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGLKDKSLKGVMARGHWDGTKQIIEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+R++PHTLIEGCVIA FA+GAH 
Sbjct: 61  PTGLKWSFMPKENDGRPHYLVVNADESEPGTCKDREILRNDPHTLIEGCVIAGFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE++RERE+LQAA+DECY +GLLG N+K G+D DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYMREREALQAAIDECYDAGLLGKNNKNGWDYDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGASWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHV  PCT E+++ ++F ELIE HCGGIRGGWDNLL VIPGG+S P +    M+ 
Sbjct: 241 LFMVSGHVERPCTFEDALGLSFRELIEHHCGGIRGGWDNLLGVIPGGASCPIVRGEDMKD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++E+ S  GT  +IVMD+STD+IKAI R++ F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AIMDFDGMREVKSSFGTGGMIVMDKSTDVIKAIARIAAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V+ER+VKG AQKREID+L+EV+K IEG TICALGDAAAWP+Q LI+NFRP IE+RIDQY
Sbjct: 361 VLERMVKGNAQKREIDMLFEVTKQIEGHTICALGDAAAWPVQALIRNFRPEIEKRIDQY 419


>gi|254461305|ref|ZP_05074721.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206677894|gb|EDZ42381.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 433

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 311/419 (74%), Positives = 361/419 (86%), Gaps = 2/419 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L  + +RGHWD    I++KGRDW+I+++KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAAIIKKGRDWVIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DE Y +GL+G N +K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDEAYDAGLVGKNAAKSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W+S FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFSSFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGI+GGWDNL AVIPGGSSVPC+   +MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIKGGWDNLKAVIPGGSSVPCVRGEKMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            A MD+D L+ ++GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM
Sbjct: 301 DATMDFDYLRNDLGSGLGTAAVIVMDKDTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MRVMERLV G A   EID+L++V+K +EG TICALGDAAAWPIQGLI NFR  IE+RI 
Sbjct: 361 MRVMERLVHGNADPSEIDMLWDVTKQVEGHTICALGDAAAWPIQGLINNFRDEIEDRIK 419


>gi|163793192|ref|ZP_02187168.1| NADH dehydrogenase subunit D [alpha proteobacterium BAL199]
 gi|159181838|gb|EDP66350.1| NADH dehydrogenase subunit D [alpha proteobacterium BAL199]
          Length = 434

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 287/421 (68%), Positives = 333/421 (79%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTN+YG     L  +  RG W N   +L +  + ++  VKASGLRGRGGAGF
Sbjct: 1   MLKDDDRIFTNVYGWFDWGLDGARKRGDWSNTKALLAQTPEELVEAVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK   ++PHYLVVNADESEPGTCKDRDI+RHEPH LIEGC+I  +++ A  
Sbjct: 61  PTGLKWSFMPKEVKEKPHYLVVNADESEPGTCKDRDILRHEPHKLIEGCLIGGYSMRAKA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E ++LQAA+D+ Y +GL+G N+   GYD D+ +H GAGAYICGEETALL
Sbjct: 121 AYIYIRGEFYNEAQNLQAAIDQAYDAGLIGKNACGSGYDFDVFLHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAVVPTILRRG  W++  GR  N GT
Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVVPTILRRGPEWFAALGRPKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE + I   ELI+KH GG+ GGWDNLL VIPGGSSVP LP     
Sbjct: 241 KLFCISGHVNNPCNVEEELGIPLRELIDKHAGGVIGGWDNLLGVIPGGSSVPVLPKSICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E+ SGLGTAAVIVM++STDI+KAI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDSLREVRSGLGTAAVIVMNQSTDIVKAIARLSAFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+V+G A   EID+L EVS+ IEG TICALGDAAAWP+QGLI++FRP +E RI  Y
Sbjct: 361 RVMERMVRGEADVDEIDVLEEVSRQIEGHTICALGDAAAWPVQGLIRHFRPEMERRIAAY 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|225627304|ref|ZP_03785341.1| NADH-quinone oxidoreductase, F subunit [Brucella ceti str. Cudo]
 gi|260168542|ref|ZP_05755353.1| NADH dehydrogenase I subunit F [Brucella sp. F5/99]
 gi|261758015|ref|ZP_06001724.1| respiratory-chain NADH dehydrogenase [Brucella sp. F5/99]
 gi|225617309|gb|EEH14354.1| NADH-quinone oxidoreductase, F subunit [Brucella ceti str. Cudo]
 gi|261737999|gb|EEY25995.1| respiratory-chain NADH dehydrogenase [Brucella sp. F5/99]
          Length = 435

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 319/421 (75%), Positives = 365/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPEQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|17987436|ref|NP_540070.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 1 str. 16M]
 gi|62289756|ref|YP_221549.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 1 str. 9-941]
 gi|82699684|ref|YP_414258.1| NADH dehydrogenase I subunit F [Brucella melitensis biovar Abortus
           2308]
 gi|189024001|ref|YP_001934769.1| NADH dehydrogenase I subunit F [Brucella abortus S19]
 gi|225852323|ref|YP_002732556.1| NADH dehydrogenase I subunit F [Brucella melitensis ATCC 23457]
 gi|237815243|ref|ZP_04594241.1| NADH-quinone oxidoreductase, F subunit [Brucella abortus str. 2308
           A]
 gi|254689063|ref|ZP_05152317.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 6 str. 870]
 gi|254693545|ref|ZP_05155373.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 3 str. Tulya]
 gi|254697197|ref|ZP_05159025.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730093|ref|ZP_05188671.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 4 str. 292]
 gi|256044486|ref|ZP_05447390.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113342|ref|ZP_05454200.1| NADH dehydrogenase I subunit F [Brucella melitensis bv. 3 str.
           Ether]
 gi|256257312|ref|ZP_05462848.1| NADH dehydrogenase I subunit F [Brucella abortus bv. 9 str. C68]
 gi|256264178|ref|ZP_05466710.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 2
           str. 63/9]
 gi|260545494|ref|ZP_05821235.1| respiratory-chain NADH dehydrogenase [Brucella abortus NCTC 8038]
 gi|260563840|ref|ZP_05834326.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 1
           str. 16M]
 gi|260754561|ref|ZP_05866909.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260757782|ref|ZP_05870130.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260761607|ref|ZP_05873950.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883588|ref|ZP_05895202.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
 gi|261213810|ref|ZP_05928091.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|265990910|ref|ZP_06103467.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994748|ref|ZP_06107305.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
 gi|297248161|ref|ZP_06931879.1| NADH oxidoreductase (quinone), F subunit [Brucella abortus bv. 5
           str. B3196]
 gi|17983129|gb|AAL52334.1| NADH-quinone oxidoreductase chain f [Brucella melitensis bv. 1 str.
           16M]
 gi|62195888|gb|AAX74188.1| NuoF, NADH dehydrogenase I, F subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615785|emb|CAJ10783.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|189019573|gb|ACD72295.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella
           abortus S19]
 gi|225640688|gb|ACO00602.1| NADH-quinone oxidoreductase, F subunit [Brucella melitensis ATCC
           23457]
 gi|237790080|gb|EEP64290.1| NADH-quinone oxidoreductase, F subunit [Brucella abortus str. 2308
           A]
 gi|260096901|gb|EEW80776.1| respiratory-chain NADH dehydrogenase [Brucella abortus NCTC 8038]
 gi|260153856|gb|EEW88948.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 1
           str. 16M]
 gi|260668100|gb|EEX55040.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
 gi|260672039|gb|EEX58860.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674669|gb|EEX61490.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
 gi|260873116|gb|EEX80185.1| NADH-quinone oxidoreductase [Brucella abortus bv. 9 str. C68]
 gi|260915417|gb|EEX82278.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
 gi|262765861|gb|EEZ11650.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 3 str. Ether]
 gi|263001694|gb|EEZ14269.1| NADH-quinone oxidoreductase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094396|gb|EEZ18241.1| respiratory-chain NADH dehydrogenase [Brucella melitensis bv. 2
           str. 63/9]
 gi|297175330|gb|EFH34677.1| NADH oxidoreductase (quinone), F subunit [Brucella abortus bv. 5
           str. B3196]
 gi|326408830|gb|ADZ65895.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Brucella
           melitensis M28]
 gi|326538546|gb|ADZ86761.1| NADH-quinone oxidoreductase, F subunit [Brucella melitensis M5-90]
          Length = 435

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 319/421 (75%), Positives = 364/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+G H 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGVHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG N+K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKNNKCGWDMDIYVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P + A  M  
Sbjct: 241 LFQMSGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKAEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++E  S  GT  +IVMD+STDIIKAI RLS F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AVMDFDGMREKKSSFGTGGLIVMDKSTDIIKAIARLSAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID+Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|260462235|ref|ZP_05810479.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259032095|gb|EEW33362.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 434

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 317/421 (75%), Positives = 363/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF N+YGL  KSL+ +M+RG WDN   I+ KGR+WI+NE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFNNIYGLFDKSLAGAMARGAWDNTPGIIAKGREWIVNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDRDI+R++PHTL+EG  IA FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPSYLVVNADESEPGTCKDRDILRNDPHTLVEGSFIAGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQ A+DE Y + L+G N+  GYD DI +HHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQRAIDEAYEAKLIGKNNTSGYDFDIYMHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+  
Sbjct: 241 LFCISGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 TPMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLV+G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR  +E RID++ 
Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|163746205|ref|ZP_02153564.1| NADH-quinone oxidoreductase chain F [Oceanibulbus indolifex HEL-45]
 gi|161380950|gb|EDQ05360.1| NADH-quinone oxidoreductase chain F [Oceanibulbus indolifex HEL-45]
          Length = 431

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 313/421 (74%), Positives = 359/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG+  ++L  + SRGHWD    I++KGRDWI++++KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGMHDRTLKGAQSRGHWDGTAGIIQKGRDWIVDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQ A+DE Y +GL+G N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 121 CYIYLRGEYIREREALQTAIDEAYEAGLVGKNASKSGWDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRANNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI F+ELIE HCGGIRGGWDNL AVIPGGSSVP +P   MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSIGFEELIETHCGGIRGGWDNLKAVIPGGSSVPLIPGKDMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAIMDFDYLREQRSGLGTAAVIVMDNSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI   
Sbjct: 361 RVMDRLVTGDAEPEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIKHK 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|195115497|ref|XP_002002293.1| GI13499 [Drosophila mojavensis]
 gi|193912868|gb|EDW11735.1| GI13499 [Drosophila mojavensis]
          Length = 476

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 277/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +I+ KG DWIINE+K SGLRGRGGAGF 
Sbjct: 49  LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 168

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GY+ D+ +H GAGAYICGEETAL+E
Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYNFDVFMHRGAGAYICGEETALIE 228

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 229 SLEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGNWFASFGRTRNSGTK 288

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 289 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVIGGWDNLLGVIPGGSSTPIIPRKVCDD 348

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 349 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 408

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ 
Sbjct: 409 IMTRFVKGDAQPSEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQHA 468

Query: 421 R 421
           +
Sbjct: 469 Q 469


>gi|302786848|ref|XP_002975195.1| hypothetical protein SELMODRAFT_150347 [Selaginella moellendorffii]
 gi|300157354|gb|EFJ23980.1| hypothetical protein SELMODRAFT_150347 [Selaginella moellendorffii]
          Length = 460

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 286/421 (67%), Positives = 339/421 (80%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG+    L  +M+RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 30  LKDEDRIFTNLYGIHDPFLKGAMARGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFP 89

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 90  SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGCLIAGVGMRARAA 149

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER++L+ AV E YA+G +G N+   GYD DI VH GAGAYICGEETALLE
Sbjct: 150 YIYIRGEYVNERKNLERAVKEAYAAGYIGKNACGSGYDFDIHVHFGAGAYICGEETALLE 209

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 210 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 269

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 270 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDD 329

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 330 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWT 389

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER+  G A   EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI +  
Sbjct: 390 LMERMKVGNAYLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRILERA 449

Query: 421 R 421
           +
Sbjct: 450 K 450


>gi|56697615|ref|YP_167984.1| NADH dehydrogenase I subunit F [Ruegeria pomeroyi DSS-3]
 gi|56679352|gb|AAV96018.1| NADH-quinone oxidoreductase, F subunit [Ruegeria pomeroyi DSS-3]
          Length = 432

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 316/422 (74%), Positives = 367/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  +M+RGHWD    I+ KGRDWII ++K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRTLKGAMARGHWDGTAGIIGKGRDWIIQQMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N +K G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAKSGWDFDLYLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+   +M+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+STDI+KAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVRGEAEPEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|126736062|ref|ZP_01751806.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. CCS2]
 gi|126714619|gb|EBA11486.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. CCS2]
          Length = 428

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 317/421 (75%), Positives = 360/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D++RIFTNLYG+  ++L  + +RGHWD    I++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLKDENRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DECYA+GL+G N+ K G+D DI + HGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREKEALQAAIDECYAAGLVGPNAAKSGWDFDIYLTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++G GR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGDWFAGMGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEEMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MD+D LKE GS LGTAAVIVMD STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DAVMDFDALKEKGSSLGTAAVIVMDNSTDMIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLV+G A   EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR  IE+RI   
Sbjct: 361 RVMARLVEGNASVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRDEIEDRIKDK 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|283046718|ref|NP_001164305.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           [Tribolium castaneum]
 gi|270008216|gb|EFA04664.1| hypothetical protein TcasGA2_TC014119 [Tribolium castaneum]
          Length = 478

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 275/423 (65%), Positives = 333/423 (78%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  ++ RG W    +IL KG DWIINE+K SGLRGRGGAGF 
Sbjct: 50  LSDEDRIFTNLYGKHDWRLKGALKRGDWYKTKEILLKGSDWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAKAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GLLG N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQVAIAEAYQAGLLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 230 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVSPTICRRGGTWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSITF EL+E+H GGI GGWDNLLA+IPGGSS P +P      
Sbjct: 290 LFNISGHVNRPCTVEEEMSITFKELVERHAGGIIGGWDNLLAIIPGGSSTPLIPKSVCED 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG  WM +
Sbjct: 350 VIMDFDGLVAAQTSLGTAAIIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGINWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++H
Sbjct: 410 IMYRFVDGNAKPEEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMRKFH 469

Query: 421 RCN 423
             N
Sbjct: 470 EQN 472


>gi|289743527|gb|ADD20511.1| NADH dehydrogenase flavoprotein 1 ubiquinone [Glossina morsitans
           morsitans]
          Length = 474

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 278/419 (66%), Positives = 331/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L+ ++ RG W    +I+ KG DWIINE+K SGLRGRGGAGF 
Sbjct: 50  LADQDRIFTNLYGRHDWRLNGALKRGDWYKTKEIVLKGADWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA+ A
Sbjct: 110 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQIAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGAWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSIT  ELIE+H GG+ GGW+NLLAVIPGGSS P +P      
Sbjct: 290 LFNISGHVNTPCTVEEEMSITLKELIERHAGGVCGGWENLLAVIPGGSSTPLIPKKVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DGL    + LGTAA+IVMD+STDIIKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 AIMDFDGLIAAQTSLGTAAIIVMDKSTDIIKAIARLIEFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R V G AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y
Sbjct: 410 IMARFVSGNAQAAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKY 468


>gi|195434685|ref|XP_002065333.1| GK15392 [Drosophila willistoni]
 gi|194161418|gb|EDW76319.1| GK15392 [Drosophila willistoni]
          Length = 478

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 275/419 (65%), Positives = 327/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWIINE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG  W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGPWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV  PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVKNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKSVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+  +
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLH 468


>gi|194760181|ref|XP_001962320.1| GF15407 [Drosophila ananassae]
 gi|190616017|gb|EDV31541.1| GF15407 [Drosophila ananassae]
          Length = 477

 Score =  552 bits (1422), Expect = e-155,   Method: Composition-based stats.
 Identities = 276/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +I+ KG DWIINE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPDWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG +W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGNWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ QY 
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEVEKRMQQYA 469

Query: 421 R 421
           +
Sbjct: 470 Q 470


>gi|154253660|ref|YP_001414484.1| NADH dehydrogenase I subunit F [Parvibaculum lavamentivorans DS-1]
 gi|154157610|gb|ABS64827.1| NADH-quinone oxidoreductase, F subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 429

 Score =  551 bits (1420), Expect = e-155,   Method: Composition-based stats.
 Identities = 311/417 (74%), Positives = 347/417 (83%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGLQ   L  + SRG WD    I+ KGRDWI++E+K SGLRGRGGAGF
Sbjct: 1   MLEDKDRIFTNLYGLQDWRLKAARSRGDWDGTADIIAKGRDWILDEMKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+P  LIEGC+IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPQKLIEGCLIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVRGEFIRERE LQAA+DE Y +GL+G N+   G+D +I VHHGAGAYICGEETALL
Sbjct: 121 CYIYVRGEFIREREQLQAAIDEAYEAGLVGKNAAGSGWDFEIYVHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPANVGLYG PTTVNNVESIAV PTILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGAPTTVNNVESIAVAPTILRRGATWFSSLGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE M I   EL+EKH GG+RGGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KLFCISGHVNRPCNVEEEMGIPLRELLEKHAGGVRGGWDNLLAVIPGGSSVPLLPKSVCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDSLKNVQSGLGTAAVIVMDKSTDVIKAIARLSAFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           RVMERLV G A+ +EID+L +V+K +EG TICALGDAAAWP+QGLI++FR  IEERI
Sbjct: 361 RVMERLVAGDAEVQEIDMLLDVTKRVEGHTICALGDAAAWPVQGLIRHFRGTIEERI 417


>gi|319782986|ref|YP_004142462.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168874|gb|ADV12412.1| NADH-quinone oxidoreductase, F subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 434

 Score =  551 bits (1420), Expect = e-155,   Method: Composition-based stats.
 Identities = 317/421 (75%), Positives = 366/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL  KSL+ +M+RG WDN   I+ KGR+WI+NE+KASGLRGRGGAGF
Sbjct: 1   MLGDKDRIFTNIYGLFDKSLAGAMARGAWDNTPGIVAKGREWIVNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDRDI+R++PHTL+EG ++A FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPSYLVINADESEPGTCKDRDILRNDPHTLVEGALLAGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQ A++E Y + L+G N+  GYD DI +HHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQRAIEEAYEAKLIGKNNTSGYDFDIYMHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+  
Sbjct: 241 LFCISGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLV+G AQKREID+L +V+K IEG TICALGDAAAWPIQGL+++FR  +E RID++ 
Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|288856265|ref|NP_001165788.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           [Nasonia vitripennis]
          Length = 472

 Score =  551 bits (1420), Expect = e-155,   Method: Composition-based stats.
 Identities = 267/421 (63%), Positives = 321/421 (76%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W    +IL+KG DWIINEVK SGLRGRGGAGF 
Sbjct: 45  LKDEDRIFTNLYGRHDWRLKGAMKRGDWYKTKEILDKGADWIINEVKVSGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLV+N DE EPGTCKDR+I+RH+PH LIEGC+IA  A+GA  A
Sbjct: 105 SGMKWSFMNKPSDGRPKYLVINGDEGEPGTCKDREILRHDPHKLIEGCLIAGRAMGACAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  + Q A+ E Y +GLLG N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 165 YIYIRGEFYNEASNTQVAIAEAYQAGLLGKNACGSGYDFDVFVQRGAGAYICGEETALIE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV P I RRG SW++ FGR  N GTK
Sbjct: 225 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPAICRRGGSWFASFGRPRNSGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L++ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL +IPGGSS P +P      
Sbjct: 285 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGIIPGGSSTPVIPKHICDT 344

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD L  + S  GTAA+IVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 345 VLMDYDDLVRVQSSFGTAAIIVMNKQTDIIKAIARLISFYKHESCGQCTPCREGIAWMYK 404

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M+R V+G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE R+  + 
Sbjct: 405 IMQRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIESRMLNFK 464

Query: 421 R 421
           +
Sbjct: 465 K 465


>gi|48097536|ref|XP_391916.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial [Apis mellifera]
          Length = 469

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 268/421 (63%), Positives = 323/421 (76%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +I+EKG DWIINE+K SGLRGRGGAGF 
Sbjct: 45  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVEKGADWIINEIKVSGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVN DE EPGTCKDR+I+RH+PH L+EGC+IA  A+GA  A
Sbjct: 105 SGMKWSFMNKPSDGRPKYLVVNGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD DI V  GAGAYICGEETAL+E
Sbjct: 165 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACGSGYDFDIFVQRGAGAYICGEETALIE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 225 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 285 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 344

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            ++D+D L  + +  GTAAVIVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 345 VLLDFDDLVRVQTSFGTAAVIVMNKQTDIIKAIARLISFYKHESCGQCTPCREGISWMYK 404

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V+G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE RI Q+ 
Sbjct: 405 IMRRFVQGQAEVHEIDMLWELTKQIEMHTICALADGAAWPVQGLIRHFRPEIEARIAQHK 464

Query: 421 R 421
           +
Sbjct: 465 Q 465


>gi|254294097|ref|YP_003060120.1| NADH dehydrogenase I subunit F [Hirschia baltica ATCC 49814]
 gi|254042628|gb|ACT59423.1| NADH-quinone oxidoreductase, F subunit [Hirschia baltica ATCC
           49814]
          Length = 436

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 290/421 (68%), Positives = 344/421 (81%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG    SL  +  RG W++  ++++ G +WI +++K SGLRGRGGAGF
Sbjct: 1   MLLDKDRIFTNLYGHHDWSLEGAKQRGAWNSTKELMQFGPEWICDQIKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+FMPK   DRPHYLVVNADESEPGTCKDRDIMRH+PH LIEGC+IAS+A+ A+ 
Sbjct: 61  PTGLKWTFMPKEVKDRPHYLVVNADESEPGTCKDRDIMRHDPHLLIEGCLIASYAMRANT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+I ERE LQ A++E Y +GL+G N+   G+D D+ VHHGAGAYICGEETALL
Sbjct: 121 CYIYLRGEYIFERERLQQAINEAYKAGLIGKNACGSGWDFDLHVHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPAN GLYG PTTVNNVESIAV PTILRRGA W+  FGR+NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANAGLYGAPTTVNNVESIAVAPTILRRGAGWFKKFGRDNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F+ISGHVN PC VEE MSI    L+E HCGG+RGGW+NL AVIPGGSSVP +P     
Sbjct: 241 KVFAISGHVNRPCNVEEEMSIPLKTLLETHCGGVRGGWENLKAVIPGGSSVPMIPKDICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E+ SGLGTAAVIVMD+STD+++AI RL+ FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDALREVQSGLGTAAVIVMDQSTDVVRAIARLAYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+VKG A+  EID+L +VS  IEG TICALGDAAAWP+QGLI++FR  IEERI  Y
Sbjct: 361 RVLTRMVKGEAEASEIDMLLDVSYQIEGHTICALGDAAAWPVQGLIRHFRSEIEERISSY 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|288958984|ref|YP_003449325.1| NADH dehydrogenase I chain F [Azospirillum sp. B510]
 gi|288911292|dbj|BAI72781.1| NADH dehydrogenase I chain F [Azospirillum sp. B510]
          Length = 429

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 295/421 (70%), Positives = 337/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG Q   L  +  RG WDN   IL  GR+WII +VK SGLRGRGGAGF
Sbjct: 1   MLRDEDRIFTNLYGFQDFGLDGARKRGDWDNTASILANGREWIIEQVKQSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  +D+P YLV+NADE EPGTCKDRDI+RH+PH LIEGC+IA FAIGA  
Sbjct: 61  STGMKWSFMPKNVTDKPVYLVINADEGEPGTCKDRDILRHDPHKLIEGCLIAGFAIGASA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE YA+GL+G N+   GYD D+ +H GAGAYICGEETAL+
Sbjct: 121 CYIYIRGEFYNEGSNVQRAIDEAYAAGLIGKNACGTGYDYDVYIHRGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKGQPR KPPFPA  GLY CPTTVNNVESIAVVPTILRRGASW++G GR  N GT
Sbjct: 181 ESIEGKKGQPRNKPPFPAQAGLYSCPTTVNNVESIAVVPTILRRGASWFAGLGRPKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE M I   ELIEKH GG+RGGWDNLL +IPGGSSVP LP     
Sbjct: 241 KLFCISGHVNNPCNVEEEMGIPLKELIEKHAGGVRGGWDNLLGIIPGGSSVPVLPKSICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E+ SGLGTAAVIVMD+STDI+KAI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 301 TVLMDFDSLREVQSGLGTAAVIVMDKSTDIVKAIARLSSFYAHESCGQCTPCREGTGWMS 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+R+V G A+  EID+L +V+K +EG TICALGDAAAWPIQGL ++FRP +E RI  Y
Sbjct: 361 RVMQRMVTGNARLEEIDMLLQVTKQVEGHTICALGDAAAWPIQGLFRHFRPEVERRIQAY 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|114327961|ref|YP_745118.1| NADH dehydrogenase I subunit F [Granulibacter bethesdensis CGDNIH1]
 gi|114316135|gb|ABI62195.1| NADH-quinone oxidoreductase chain F [Granulibacter bethesdensis
           CGDNIH1]
          Length = 438

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 293/422 (69%), Positives = 343/422 (81%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L  +++RG WD    IL +GRD II ++K SGLRGRGGAGF
Sbjct: 1   MLNDRDRIFTNLYGEHDWGLKGALARGDWDGTAAILARGRDAIIEDIKISGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PH L+EGC+IA+FA+GAH 
Sbjct: 61  PTGMKWSFMPKESDGRPHYLVVNADESEPGTCKDRDILRHDPHKLVEGCLIAAFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IYVRGEF  E   LQAA+D+ Y +GL+G N+   G+D D+ VH GAGAYICGEETAL+
Sbjct: 121 AYIYVRGEFYNESCHLQAAIDQAYEAGLIGKNACGSGWDFDLYVHRGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG +W++  GR  N GT
Sbjct: 181 ESIEGKKGMPRLKPPFPAGVGLYGCPTTVNNVESIAVCPTILRRGGAWFASLGRPKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLFSISGHVN PC VEE + I   EL+E++ GG+RGGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KLFSISGHVNKPCNVEEELGIPLRELLERYAGGVRGGWDNLLAVIPGGSSVPLLPKSICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E  SGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 DVLMDFDSLREQRSGLGTAAVIVMDKSTDVIKAIARLSHFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M R+V+G A   EID+L +V++ +EG TICALGDAAAWP+QGLI++FRP+IE+RI  Y
Sbjct: 361 RIMNRMVEGRADLEEIDMLEQVTRQVEGHTICALGDAAAWPVQGLIRHFRPVIEDRIRAY 420

Query: 420 HR 421
            +
Sbjct: 421 KQ 422


>gi|158423296|ref|YP_001524588.1| NADH dehydrogenase I subunit F [Azorhizobium caulinodans ORS 571]
 gi|158330185|dbj|BAF87670.1| NADH-quinone oxidoreductase F subunit protein [Azorhizobium
           caulinodans ORS 571]
          Length = 433

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 308/423 (72%), Positives = 354/423 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG +   L  ++ RG+WD    ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGYEDSGLKGALKRGNWDGTKGILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK    RPHYLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+GAH 
Sbjct: 61  STGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE++RERE L+AA+DE Y +GL+G N+  GY  D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYVRERERLEAAIDEAYDAGLIGKNNIHGYPFDLYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV P ILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPEILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF I GHVN PC VE++MSITF EL+EKH GGIRGGWDNLLA+IPGG+S P +PA     
Sbjct: 241 LFGILGHVNTPCVVEDAMSITFRELVEKHGGGIRGGWDNLLAIIPGGASCPVVPAAACED 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            I+D+DGL+ + S  GTA V+VMD+STDI++AI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 LILDFDGLRAVKSSFGTAGVLVMDKSTDIVRAIARISYFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+ +G AQKREID L EV+  IEG TICALGDAAAWP+QGLI+NFR  IE+RIDQY 
Sbjct: 361 VLNRMAEGRAQKREIDQLLEVTTQIEGHTICALGDAAAWPVQGLIRNFRHEIEKRIDQYA 420

Query: 421 RCN 423
              
Sbjct: 421 ANP 423


>gi|148255908|ref|YP_001240493.1| NADH dehydrogenase I subunit F [Bradyrhizobium sp. BTAi1]
 gi|146408081|gb|ABQ36587.1| NADH dehydrogenase subunit F [Bradyrhizobium sp. BTAi1]
          Length = 441

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 308/420 (73%), Positives = 348/420 (82%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGL    L  +  RG WD    +++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFTNLYGLHDWGLEGARRRGSWDGTKGLIDKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+ AH
Sbjct: 61  PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLASFAMNAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G N+  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 ACYIYVRGEFIRERERLQAAIDQAYEANLIGKNNIHGWPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGASW++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGASWFAGIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR  IE RIDQY
Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLITHFRHEIEARIDQY 420


>gi|304319950|ref|YP_003853593.1| NADH dehydrogenase I, F subunit [Parvularcula bermudensis HTCC2503]
 gi|303298853|gb|ADM08452.1| NADH dehydrogenase I, F subunit [Parvularcula bermudensis HTCC2503]
          Length = 453

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 293/420 (69%), Positives = 340/420 (80%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGL+   L  +  RG W+    IL+ G DW+I +VK SGLRGRGGAGF
Sbjct: 22  MLQDKDRIFTNLYGLKDPFLEGAKDRGAWNGTKDILDMGIDWVIQQVKDSGLRGRGGAGF 81

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK   +RPHYLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 82  PTGLKWSFMPKEVGERPHYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMRAHA 141

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+I ERE LQ A+DE YA+ L+G ++  GYD D+ + HGAGAYICGEETALLE
Sbjct: 142 CYIYIRGEYIFEREQLQKAIDEAYAAKLIGKDNVHGYDFDLYLSHGAGAYICGEETALLE 201

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTI+RRGA W+  FGRENN GTK
Sbjct: 202 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTIIRRGADWFKRFGRENNHGTK 261

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F ISGHVN PC VEE MSI    LI+ HCGG+RGGWDNL AVIPGGSSV CLP      
Sbjct: 262 VFCISGHVNKPCNVEEEMSIPLKTLIDTHCGGVRGGWDNLKAVIPGGSSVRCLPKSICDD 321

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+E  SGLGTAAVIVMD+STD++KAI R++ FYKHESCGQCTPCREGTGWM R
Sbjct: 322 VLMDFDALREHKSGLGTAAVIVMDKSTDMVKAIARIAHFYKHESCGQCTPCREGTGWMWR 381

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+ +G A+  EID L +V+  +EG TICALGDAAAWP+QGLI++FR  IEE+I  Y 
Sbjct: 382 VLVRMSRGEAEMWEIDKLLDVAGQVEGHTICALGDAAAWPVQGLIQHFRHEIEEKITAYR 441


>gi|27380023|ref|NP_771552.1| NADH dehydrogenase I subunit F [Bradyrhizobium japonicum USDA 110]
 gi|27353177|dbj|BAC50177.1| NADH ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum
           USDA 110]
          Length = 441

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 305/420 (72%), Positives = 345/420 (82%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L  +  RG WD    I++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFKNLYGLHDWGLEGARRRGAWDGTKNIIDKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH
Sbjct: 61  PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASCAMNAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  G+  DI V HGAGAYICGEETALL
Sbjct: 121 ACYIYVRGEFIREREHLQAAIDQAYEAKLVGKDNVNGWPFDIYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR  IE RIDQY
Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420


>gi|84502613|ref|ZP_01000732.1| NADH-quinone oxidoreductase, F subunit [Oceanicola batsensis
           HTCC2597]
 gi|84389008|gb|EAQ01806.1| NADH-quinone oxidoreductase, F subunit [Oceanicola batsensis
           HTCC2597]
          Length = 430

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 318/422 (75%), Positives = 369/422 (87%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  +  RGHWD    I++KGRDWII+++KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNIYGMHDRTLQGARDRGHWDGTADIIKKGRDWIIDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG+N +K G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGANAAKSGWDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGRENN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFAGFGRENNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+   +M+
Sbjct: 241 KLFAVSGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLVKG A   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR +IE+RI  
Sbjct: 361 MRVMDRLVKGEASVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDVIEDRIKH 420

Query: 419 YH 420
             
Sbjct: 421 KR 422


>gi|193587168|ref|XP_001946240.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like [Acyrthosiphon pisum]
          Length = 482

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 279/423 (65%), Positives = 329/423 (77%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D DRIFTNLYG     L  ++ RG W    +IL KG D+IINEVK SGLRGRGGAGF 
Sbjct: 53  LSDSDRIFTNLYGRHDWQLKGALKRGDWYKTKEILIKGTDYIINEVKTSGLRGRGGAGFP 112

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A  A+GA  A
Sbjct: 113 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLVAGRAMGACAA 172

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ VH GAGAYICGEETAL+E
Sbjct: 173 YIYIRGEFYNEASNLQQAICEAYQAGLIGKNACNSGYDFDVFVHRGAGAYICGEETALIE 232

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W+ G GR  N GTK
Sbjct: 233 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGAWFLGLGRPRNSGTK 292

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GGI GGWDNLLAVIPGGSS P +P      
Sbjct: 293 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGIIGGWDNLLAVIPGGSSTPLIPKHVCET 352

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DGL    + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG  WM +
Sbjct: 353 AIMDFDGLVAAQTSLGTAALIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGINWMNK 412

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E R+ +Y 
Sbjct: 413 IMYRFVDGQAQSSEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELECRMKKYQ 472

Query: 421 RCN 423
             N
Sbjct: 473 EQN 475


>gi|220924010|ref|YP_002499312.1| NADH dehydrogenase subunit I F [Methylobacterium nodulans ORS 2060]
 gi|219948617|gb|ACL59009.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium nodulans
           ORS 2060]
          Length = 433

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 301/423 (71%), Positives = 351/423 (82%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+DQDRIFTNLYG     L  +  RG WD    +LE+GRDWI+ E+K SGLRGRGGAGF
Sbjct: 1   MLSDQDRIFTNLYGFHSPGLDAARKRGAWDGTKFLLEQGRDWIVEEMKRSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH 
Sbjct: 61  STGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGE++ E+ +LQ AVDE Y + L+G ++  GY  D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEYVAEKHALQRAVDEAYEARLIGQDNVHGYPFDLYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV   ILRRGA W++G GR NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGAILRRGAEWFAGIGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE++ I F ELI++HCGGIRGGWDNLL VIPGGSSVP +PA Q+  
Sbjct: 241 LFCVSGHVNRPCNVEEALGIPFRELIDRHCGGIRGGWDNLLCVIPGGSSVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ + SGLGTAAV+V+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDTLRGLQSGLGTAAVMVLDKSTDIVSAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R+ +G AQKREID+L +V+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y 
Sbjct: 361 VMLRMAEGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRYS 420

Query: 421 RCN 423
              
Sbjct: 421 ANP 423


>gi|170742516|ref|YP_001771171.1| NADH dehydrogenase I subunit F [Methylobacterium sp. 4-46]
 gi|168196790|gb|ACA18737.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium sp. 4-46]
          Length = 433

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 305/423 (72%), Positives = 355/423 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+DQDRIFTNLYG     L  +  RG WD    +LE+GRDWII+E+K SGLRGRGGAGF
Sbjct: 1   MLSDQDRIFTNLYGFHSPGLDAARRRGAWDGTKFLLEQGRDWIIDEMKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH 
Sbjct: 61  STGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGE++ E+ +LQ AVDE Y + L+G ++  GY  D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEYVAEKHALQRAVDEAYEARLIGPDNVHGYPFDLYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV   ILRRGA+W+SG GR NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGAILRRGAAWFSGIGRPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE++ I F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+  
Sbjct: 241 LFCVSGHVNRPCNVEEALGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAQIAD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ +GSGLGTAAVIV+D++TDI+ AI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 APMDFDTLRGLGSGLGTAAVIVLDKTTDIVAAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R+ +G AQKREID+L +V+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y 
Sbjct: 361 VMLRMAEGRAQKREIDMLLDVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRYS 420

Query: 421 RCN 423
              
Sbjct: 421 ANP 423


>gi|146341108|ref|YP_001206156.1| NADH dehydrogenase I subunit F [Bradyrhizobium sp. ORS278]
 gi|146193914|emb|CAL77931.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           (NDH-1, chain F) [Bradyrhizobium sp. ORS278]
          Length = 441

 Score =  549 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 309/420 (73%), Positives = 349/420 (83%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGLQ   L  +  RG WD    +++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFTNLYGLQDWGLEGARRRGSWDGTKGLIDKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+ AH
Sbjct: 61  PTGLKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHHLVEGCLLASFAMNAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  G+  DI V HGAGAYICGEETALL
Sbjct: 121 TCYIYVRGEFIRERERLQAAIDQAYEAKLVGKDNVHGWPFDIYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGASW++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGASWFAGIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+M I F ELIEKHCGGIRGGWDNL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCISGHVERPCNVEEAMGIPFRELIEKHCGGIRGGWDNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR  IE RIDQY
Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLITHFRHEIEARIDQY 420


>gi|126729558|ref|ZP_01745371.1| NADH-quinone oxidoreductase, F subunit [Sagittula stellata E-37]
 gi|126709677|gb|EBA08730.1| NADH-quinone oxidoreductase, F subunit [Sagittula stellata E-37]
          Length = 432

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 315/422 (74%), Positives = 363/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  +  RGHWD    ++EKGRDWII E+K SGLRGRGGAGF
Sbjct: 1   MLHDQDRIFTNLYGMHDRTLDGAKKRGHWDGTAGLIEKGRDWIIQEMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+ ASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLFASFAMQAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQ A+DE Y +GL+G N +  G+D +I +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQRAIDEAYDAGLVGPNAAGSGWDFEIFLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGASW+S FGRENN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSSFGRENNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNL AVIPGGSSVPC+   +M+
Sbjct: 241 KLFAVSGHVNKPCVVEEAMSISFEELIEKHCGGIRGGWDNLKAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKDTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLV+G A + EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVRGEADEEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|145354210|ref|XP_001421384.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581621|gb|ABO99677.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 449

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 292/423 (69%), Positives = 345/423 (81%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  +M RG W N   ++E G DWII+E+KASGLRGRGGAGF 
Sbjct: 21  LKDQDRIFTNLYGKHDPFLKGAMKRGDWHNTKSLVELGADWIISEMKASGLRGRGGAGFP 80

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMP+V   RP+YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA  A+ A  A
Sbjct: 81  SGLKWSFMPRVSDGRPNYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAA 140

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A+ ECYA+G LG N+   G D D+ +H+GAGAYICGEETAL+E
Sbjct: 141 YIYIRGEYVNERLALERALAECYAAGYLGKNACGSGMDFDVNIHYGAGAYICGEETALIE 200

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRGA W++ FGR+NN GTK
Sbjct: 201 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVAPTILRRGADWFASFGRKNNAGTK 260

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   +LIEKHCGG+RGGWDNLLAVIPGGSSVP +P      
Sbjct: 261 LFCISGHVNNPCTVEEEMSIPLRDLIEKHCGGVRGGWDNLLAVIPGGSSVPLIPKNVCED 320

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LKE  SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 321 VLMDFDSLKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTSWLYN 380

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M+R+VKG A+  EID L E++K IEG TICALGDAAAWPIQG+I++FRPL+EERI Q+ 
Sbjct: 381 IMQRMVKGDARLEEIDTLQELTKQIEGHTICALGDAAAWPIQGVIRHFRPLLEERISQFS 440

Query: 421 RCN 423
              
Sbjct: 441 SSP 443


>gi|73982785|ref|XP_864381.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 7 [Canis familiaris]
          Length = 457

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 275/421 (65%), Positives = 329/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 28  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 88  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 147

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 148 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 207

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 208 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 267

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 268 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 327

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 328 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 387

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ 
Sbjct: 388 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 447

Query: 421 R 421
           +
Sbjct: 448 Q 448


>gi|281353395|gb|EFB28979.1| hypothetical protein PANDA_010233 [Ailuropoda melanoleuca]
          Length = 440

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 11  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 71  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 130

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 131 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVVRGAGAYICGEETALIE 190

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 191 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 250

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 251 LFNISGHVNHPCTVEEEMSVPLRELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 310

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 311 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 370

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 371 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 429


>gi|298291842|ref|YP_003693781.1| NADH-quinone oxidoreductase, F subunit [Starkeya novella DSM 506]
 gi|296928353|gb|ADH89162.1| NADH-quinone oxidoreductase, F subunit [Starkeya novella DSM 506]
          Length = 435

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 300/423 (70%), Positives = 348/423 (82%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG     L  +  RG WD    +L+ GRD+II  +KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGHHDWGLDGARKRGSWDGTKLLLDAGRDFIIEHMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PH L+EGC+IA FA+GAH 
Sbjct: 61  PTGLKWSFMPKNNDGRPHYLVVNADESEPGTCKDREILRHDPHHLVEGCLIAGFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFI ERE LQAAVD+ Y +GL+G N+  G+D DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIVEREHLQAAVDQAYEAGLIGKNNVHGWDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W++G GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFAGIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PC VEE+M I F ELIEKH GG+RGGWDNLLA+IPGG+S P +PA Q   
Sbjct: 241 LFGISGHVNTPCIVEEAMGIPFKELIEKHGGGVRGGWDNLLAIIPGGASCPIIPADQCDD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DG + + S  GTA V+VMD++TD++KAI R+S F++HESCGQCTPCREGTGWM R
Sbjct: 301 LIMDFDGCRAVKSSFGTAGVLVMDKTTDVVKAIARISYFFRHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V++R+V G AQKREIDLL +V+  +EG TICALGDAAAWP+QGLI++FR  IE RIDQY 
Sbjct: 361 VLDRMVAGRAQKREIDLLLQVTTQVEGHTICALGDAAAWPVQGLIRHFRGEIERRIDQYA 420

Query: 421 RCN 423
              
Sbjct: 421 ANP 423


>gi|194218547|ref|XP_001917609.1| PREDICTED: similar to NADH dehydrogenase [Equus caballus]
          Length = 464

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQSGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMHRF 453


>gi|159043865|ref|YP_001532659.1| NADH dehydrogenase subunit I F [Dinoroseobacter shibae DFL 12]
 gi|157911625|gb|ABV93058.1| NADH-quinone oxidoreductase, F subunit [Dinoroseobacter shibae DFL
           12]
          Length = 433

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 314/422 (74%), Positives = 365/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L+ +  RGHWD  DK+++ GRD I+  +K SGLRGRGGAGF
Sbjct: 1   MLQDQDRIFTNIYGMHDRTLAGARKRGHWDGTDKLIQMGRDDIVKIMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGE+IRERE+LQAA+DE Y +GLLG N +  G+D D+ + HGAGAYICGEETAL+
Sbjct: 121 SYIYIRGEYIREREALQAAIDEAYEAGLLGKNAAGSGWDFDLYLTHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAQFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELI+KHCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNQPCVVEEAMSISFEELIDKHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDQSTDIIKAIWRLSAFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVRGEAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|114799778|ref|YP_760453.1| NADH dehydrogenase I subunit F [Hyphomonas neptunium ATCC 15444]
 gi|114739952|gb|ABI78077.1| NADH-quinone oxidoreductase, F subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 435

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 297/420 (70%), Positives = 348/420 (82%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGL    L  +  RG W    ++LE+G DWI N++KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNLYGLHSPDLEAAKKRGAWHLTREMLEQGPDWICNQIKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+FMPK   DRPHYLVVNADESEPGTCKDR+I+RH+PH LIEGC++AS A+ AH 
Sbjct: 61  PTGLKWTFMPKEVRDRPHYLVVNADESEPGTCKDREILRHDPHLLIEGCMVASRAMRAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            ++Y+RGE+I ER +L+ AV E Y + L+G ++  G+D D+ VHHGAGAYICGEETALLE
Sbjct: 121 CYVYIRGEYINERHALEKAVKEAYEAKLIGKDNVNGWDFDLYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN GLYGCPTTVNNVESIAV PTILRRGA W++GFGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANAGLYGCPTTVNNVESIAVAPTILRRGAQWFAGFGRPNNAGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PC VEE MSITF +LIE HCGGIRGGW+NL AVIPGGSSVP +PA Q+  
Sbjct: 241 LFCISGHVNTPCNVEEEMSITFRDLIETHCGGIRGGWENLKAVIPGGSSVPMVPAEQIMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+++ SGLGTAAVIVMD+ TD+I+AI RL+ FYKHESCGQCTPCREGTGWM R
Sbjct: 301 AHMDFDTLRDLKSGLGTAAVIVMDKQTDLIRAIARLAYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ER+ +G A+  EID L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI QY 
Sbjct: 361 VLERMARGEAEHDEIDTLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRHEIEDRITQYR 420


>gi|94468934|gb|ABF18316.1| mitochondrial NADH:ubiquinone oxidoreductase NDUFV1/51 kDa subunit
           [Aedes aegypti]
          Length = 486

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 275/421 (65%), Positives = 328/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL KG DWIINE+K SGLRGRGGAGF 
Sbjct: 60  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWIINEIKVSGLRGRGGAGFP 119

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 120 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 179

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 180 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 239

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG  W++ FGR  N GTK
Sbjct: 240 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFASFGRTRNSGTK 299

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+RGGWDNLL +IPGGSS P +P      
Sbjct: 300 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVRGGWDNLLGIIPGGSSTPIIPKNVCDD 359

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 360 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGITWMYK 419

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G  +  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y 
Sbjct: 420 MMHRFVDGNGRPEEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKYE 479

Query: 421 R 421
           +
Sbjct: 480 Q 480


>gi|19920794|ref|NP_608987.1| CG9140 [Drosophila melanogaster]
 gi|7297065|gb|AAF52334.1| CG9140 [Drosophila melanogaster]
 gi|15291595|gb|AAK93066.1| GM14163p [Drosophila melanogaster]
 gi|220945776|gb|ACL85431.1| CG9140-PA [synthetic construct]
 gi|220955472|gb|ACL90279.1| CG9140-PA [synthetic construct]
          Length = 474

 Score =  548 bits (1413), Expect = e-154,   Method: Composition-based stats.
 Identities = 275/421 (65%), Positives = 329/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG  W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+  + 
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469

Query: 421 R 421
           +
Sbjct: 470 K 470


>gi|639834|emb|CAA58823.1| NADH dehydrogenase [Solanum tuberosum]
          Length = 487

 Score =  548 bits (1412), Expect = e-154,   Method: Composition-based stats.
 Identities = 287/419 (68%), Positives = 337/419 (80%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 58  LKDEDRIFTNLYGLHDPYLKGAMKRGDWYRTKDLVIKGSDWIVNEMKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKTTDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRAKAA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER+SLQ A  E Y +GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERKSLQKARQEAYEAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI+  ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 298 LFCISGHVNKPCTVEEEMSISLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKNICED 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI ++
Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIREH 476


>gi|330843279|ref|XP_003293586.1| ubiquinone oxidoreductase [Dictyostelium purpureum]
 gi|325076073|gb|EGC29892.1| ubiquinone oxidoreductase [Dictyostelium purpureum]
          Length = 477

 Score =  548 bits (1412), Expect = e-154,   Method: Composition-based stats.
 Identities = 282/420 (67%), Positives = 334/420 (79%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  +M RG W     I++KG+DWI+ E+ ASGLRGRGGAGF 
Sbjct: 50  LKDQDRIFTNLYGEHDVYLKGAMLRGDWYRTKDIIDKGKDWILKEMMASGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RPHYLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA FA+ A  A
Sbjct: 110 SGLKWSFMPKVLKGRPHYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGFAMKACAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E + L+ A++E Y +GL+G N+   GY  D+ VH GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFHYEAKVLEQAIEEAYKAGLIGENASGTGYKFDVYVHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA  GLYGCPTTV NVE++AV PTILRRG +W++GFGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFAGFGRPKNAGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   ELI+KHCGG+ GGW+NL  VIPGGSSVP LP      
Sbjct: 290 LYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWENLKGVIPGGSSVPVLPKNICDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L++  SGLGTAAVIVM++ TD+IKAI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 350 VLMDFDDLRKHRSGLGTAAVIVMNKETDMIKAIARLSKFYKHESCGQCTPCREGTGWLWD 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           + ERLV G A+  EID+L E+SK IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+ 
Sbjct: 410 ITERLVTGDAKLDEIDMLEEISKQIEGHTICALGDAAAWPVQGLIRSFRPEIEDRIKQFQ 469


>gi|255547796|ref|XP_002514955.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus
           communis]
 gi|223546006|gb|EEF47509.1| NADH-ubiquinone oxidoreductase flavoprotein, putative [Ricinus
           communis]
          Length = 486

 Score =  548 bits (1412), Expect = e-154,   Method: Composition-based stats.
 Identities = 288/418 (68%), Positives = 336/418 (80%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 58  LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERINLERARKEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 298 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 358 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI +
Sbjct: 418 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 475


>gi|254452337|ref|ZP_05065774.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter
           antarcticus 238]
 gi|198266743|gb|EDY91013.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter
           antarcticus 238]
          Length = 428

 Score =  548 bits (1412), Expect = e-154,   Method: Composition-based stats.
 Identities = 313/421 (74%), Positives = 361/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L  + +RGHWD    I++KGR WI++++KASGLRGRGGAGF
Sbjct: 2   MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGRAWIVDQMKASGLRGRGGAGF 61

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 62  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 121

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DECY +G++G N+ K G+D DI +HHGAGAYICGEETALL
Sbjct: 122 CYIYIRGEYIREKEALQAAIDECYDAGMVGKNACKSGWDFDIYLHHGAGAYICGEETALL 181

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIA VPTILRRG  W++GFGR NN GT
Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIATVPTILRRGPDWFAGFGRPNNSGT 241

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL++ISGHVN PC VEESMSI F+ELIEKHCGG+RGGWDNL AVIPGGSSVP +    MR
Sbjct: 242 KLYAISGHVNNPCVVEESMSIPFEELIEKHCGGVRGGWDNLKAVIPGGSSVPMVRGENMR 301

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+DGLKE GS LGTAAVIVMD++TD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 302 DAIMDFDGLKEKGSSLGTAAVIVMDKNTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 361

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLVKG A   EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR  IE+RI   
Sbjct: 362 RVMDRLVKGDADVSEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRGEIEDRIAHK 421

Query: 420 H 420
            
Sbjct: 422 R 422


>gi|154248547|ref|YP_001419505.1| NADH dehydrogenase I subunit F [Xanthobacter autotrophicus Py2]
 gi|154162632|gb|ABS69848.1| NADH-quinone oxidoreductase, F subunit [Xanthobacter autotrophicus
           Py2]
          Length = 433

 Score =  548 bits (1412), Expect = e-154,   Method: Composition-based stats.
 Identities = 307/423 (72%), Positives = 356/423 (84%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGLQ   L  + +RG+WD    ILEKGRDWIINE+K SGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGLQDFGLKGARARGNWDGTKAILEKGRDWIINEMKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK    RPHYLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+GAH 
Sbjct: 61  STGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+I ER+ LQAA+DE Y +GL+G ++   Y  D+ VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIFERKRLQAAIDEAYDAGLIGKSNIHDYPFDLYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFS++GHVN PC VEE+MSI F EL++KH GG+RGGWDNLL +IPGG+S P +PA Q   
Sbjct: 241 LFSLAGHVNTPCVVEEAMSIPFRELVDKHGGGVRGGWDNLLGIIPGGASCPVIPAEQCAD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DG + + S LGTA V+VMD+STDIIKAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 301 LIMDFDGTRAVKSSLGTAGVLVMDKSTDIIKAIARISAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+ +G AQKREID+L EV+  IEG TICALGDAAAWP+QGLI+++R +IEERIDQY 
Sbjct: 361 VVNRMAEGRAQKREIDMLLEVTTQIEGHTICALGDAAAWPVQGLIRHYRHVIEERIDQYA 420

Query: 421 RCN 423
              
Sbjct: 421 ANP 423


>gi|13471402|ref|NP_102968.1| NADH dehydrogenase I subunit F [Mesorhizobium loti MAFF303099]
 gi|14022144|dbj|BAB48754.1| NADH-ubiquinone dehydrogenase chain F 1 [Mesorhizobium loti
           MAFF303099]
          Length = 434

 Score =  548 bits (1411), Expect = e-154,   Method: Composition-based stats.
 Identities = 313/421 (74%), Positives = 364/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL  KSL+ +M+RG WDN   I+ KGR+WI+NE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLFDKSLAGAMARGAWDNTPGIVAKGREWIVNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDRDI+R++PHTL+EG ++A FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPSYLVINADESEPGTCKDRDILRNDPHTLVEGALLAGFAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE+LQ A+DE Y + L+G  +  GYD D+ +HHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIREREALQRAIDEAYEAKLIGKGNTSGYDFDVYMHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRGA+W+S FGR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE+MSI F ELIE HCGGIRGGWDNLLAVIPGG+SVP +PA Q+  
Sbjct: 241 LFCVSGHVNNPCTVEEAMSIPFRELIETHCGGIRGGWDNLLAVIPGGASVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+++ SGLGTAAVIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 301 TPMDFDALRDLKSGLGTAAVIVMDKSTDVVKAIARLSYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLV+G AQKREID+L +V+K +EG TICALGDAAAWPIQGL+++FR  +E RID++ 
Sbjct: 361 VMERLVRGEAQKREIDMLLDVTKQVEGHTICALGDAAAWPIQGLMRHFRGEVERRIDEFS 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|302383053|ref|YP_003818876.1| NADH-quinone oxidoreductase, F subunit [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193681|gb|ADL01253.1| NADH-quinone oxidoreductase, F subunit [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 437

 Score =  548 bits (1411), Expect = e-154,   Method: Composition-based stats.
 Identities = 299/426 (70%), Positives = 346/426 (81%), Gaps = 2/426 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYGLQ   L  + +RG W+    +L+ GRDW+I  VK SGLRGRGGAGF
Sbjct: 4   LLEDKDRIFTNLYGLQDWGLEGAKNRGCWNATKDMLDMGRDWLITNVKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK   DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH 
Sbjct: 64  STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ ERE ++AAV + Y + L+G N+  G+D D+ +HHGAGAYICGEETALLE
Sbjct: 124 CYIYLRGEYVLERERMEAAVKQAYEARLIGKNNIHGWDFDVYIHHGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAEWFAGFGRPNNTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L SISGHVN PC VEE+MSI   +LIE HCGG+RGGWDNL A+IPGG SVP +       
Sbjct: 244 LMSISGHVNRPCNVEEAMSIPLRQLIEDHCGGVRGGWDNLKAIIPGGVSVPLITREMSEV 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D L+EM SGLGTAAV+VMD STD++KAI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 304 ALMDFDSLREMKSGLGTAAVVVMDNSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419
           V+ER+  G A   EID+L EVS  IEG TICALGDAAAWP+QGLI++FR  IE+RI QY 
Sbjct: 364 VLERMAVGEADPGEIDMLLEVSTQIEGHTICALGDAAAWPVQGLIRHFRHEIEDRISQYR 423

Query: 420 -HRCNF 424
             R NF
Sbjct: 424 TRRANF 429


>gi|311247118|ref|XP_003122486.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 1 [Sus scrofa]
          Length = 464

 Score =  548 bits (1411), Expect = e-154,   Method: Composition-based stats.
 Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Q+
Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQQF 453


>gi|322791265|gb|EFZ15789.1| hypothetical protein SINV_06284 [Solenopsis invicta]
          Length = 469

 Score =  548 bits (1411), Expect = e-154,   Method: Composition-based stats.
 Identities = 266/423 (62%), Positives = 322/423 (76%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  +MSRG W    +I+EKG DWIINE+K SGLRGRGGAGF 
Sbjct: 44  LADQDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIIEKGADWIINEIKVSGLRGRGGAGFP 103

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVN DE EPGTCKDR+I+RH+PH L+EGC+IA  A+GA  A
Sbjct: 104 SGMKWSFMNKPSDGRPKYLVVNGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 163

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  + Q A+ E Y +GL+G N+   GYD DI V  GAGAYICGEETAL+E
Sbjct: 164 YIYIRGEFYNEASNTQVAIAEAYQAGLIGKNACNSGYDFDIFVQRGAGAYICGEETALIE 223

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RR  +W++ FGR  N GTK
Sbjct: 224 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRSGAWFASFGRPRNTGTK 283

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L++ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 284 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 343

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            ++D+D L  + S  GTAAVIVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 344 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLMSFYKHESCGQCTPCREGISWMHK 403

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R V+G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE R+ +  
Sbjct: 404 ILKRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMKEQK 463

Query: 421 RCN 423
           R  
Sbjct: 464 RAT 466


>gi|157116636|ref|XP_001658587.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) [Aedes
           aegypti]
 gi|108876370|gb|EAT40595.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1) [Aedes
           aegypti]
          Length = 487

 Score =  548 bits (1411), Expect = e-154,   Method: Composition-based stats.
 Identities = 275/421 (65%), Positives = 328/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL KG DWIINE+K SGLRGRGGAGF 
Sbjct: 60  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWIINEIKVSGLRGRGGAGFP 119

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 120 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 179

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 180 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 239

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG  W++ FGR  N GTK
Sbjct: 240 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFASFGRTRNSGTK 299

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+RGGWDNLL +IPGGSS P +P      
Sbjct: 300 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVRGGWDNLLGIIPGGSSTPIIPKNVCDD 359

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 360 VLMDFDGLVQAQTSLGTAAIIVMDKSTDVIKAISRLIDFYKHESCGQCTPCREGITWMYK 419

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G  +  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ +Y 
Sbjct: 420 MMHRFVDGNGRPEEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEARMKKYE 479

Query: 421 R 421
           +
Sbjct: 480 Q 480


>gi|115502493|sp|Q0MQI5|NDUV1_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|111661793|gb|ABH12158.1| mitochondrial complex I subunit NDUFV1 [Gorilla gorilla]
          Length = 464

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+SGFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFSGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGW+NLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWENLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|296218952|ref|XP_002755638.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 1 [Callithrix jacchus]
          Length = 464

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 276/421 (65%), Positives = 331/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ 
Sbjct: 395 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 454

Query: 421 R 421
           +
Sbjct: 455 Q 455


>gi|84686436|ref|ZP_01014330.1| NADH-quinone oxidoreductase, F subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665619|gb|EAQ12095.1| NADH-quinone oxidoreductase, F subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 433

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 313/422 (74%), Positives = 366/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  +  RGHWD    I++KGRDWI++++KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRTLKGAQMRGHWDGTAGIIQKGRDWIVDQMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N +  G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++ FGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPEWFASFGRKNNEGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+   +M+
Sbjct: 241 KLFAVSGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            A+MD+D L+ E+GSGLGTAAVIVMD+STDI+KAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAVMDFDYLRGELGSGLGTAAVIVMDKSTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVRGEAELEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|149184631|ref|ZP_01862949.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. SD-21]
 gi|148831951|gb|EDL50384.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. SD-21]
          Length = 430

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 298/422 (70%), Positives = 352/422 (83%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG Q   L  + +RG WD+   ++ +G D II EVKASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNLYGFQNWGLKAAEARGDWDDTKSLIARGHDNIIEEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   D    +LV+NADESEPG+CKDR+I+RH+PH LIEG +++ +A+ A 
Sbjct: 61  PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVSGYAMRAR 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGE+IRE E LQAA+DE Y +GL+G N+ K GYD D+ +H GAGAYICGEETA+
Sbjct: 121 AAYIYIRGEYIREAEVLQAAIDEAYDAGLIGKNASKSGYDFDVFLHRGAGAYICGEETAM 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTILRRGASW+S FGRENN+G
Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSSFGRENNKG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHVN PC VEE++SI F ELIEKHCGGI GG DNLLAVIPGGSSVP +PA Q+
Sbjct: 241 TKLFQISGHVNKPCVVEEALSIPFSELIEKHCGGITGGKDNLLAVIPGGSSVPLVPAEQI 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A MD+DGLK++GSGLGTA VIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 WDAPMDFDGLKDLGSGLGTAGVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R+MERL  G A   EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI++
Sbjct: 361 WRMMERLRTGDAAIEEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420

Query: 419 YH 420
           ++
Sbjct: 421 HN 422


>gi|66805535|ref|XP_636489.1| ubiquinone oxidoreductase [Dictyostelium discoideum AX4]
 gi|74852419|sp|Q54I90|NDUV1_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|60464845|gb|EAL62961.1| ubiquinone oxidoreductase [Dictyostelium discoideum AX4]
          Length = 479

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 276/421 (65%), Positives = 331/421 (78%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +++RG W     I++KG+DWI+ E+ ASGLRGRGGAGF 
Sbjct: 51  LKDKDRIFTNLYGEHDVYLKGAIARGDWYKTKNIIDKGKDWILKEMMASGLRGRGGAGFP 110

Query: 62  TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK  S DRP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A  
Sbjct: 111 SGLKWSFMPKTTSKDRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACA 170

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E + L+ A+DE Y +GL+G N+   GY  D+ VH GAGAYICGEETAL+
Sbjct: 171 AYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHRGAGAYICGEETALI 230

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G+PRLKPPFPA  GLYGCPTTV NVE++AV PTILRRG +W++ FGR  N GT
Sbjct: 231 ESIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGT 290

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELI+KHCGG+ GGWDNL  VIPGGSSVP LP     
Sbjct: 291 KLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKGVIPGGSSVPVLPKNICD 350

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L++  SGLGTAAVIVM++ TD+I AI RLS FYKHESCGQCTPCREG GW+ 
Sbjct: 351 NVLMDFDDLRQHRSGLGTAAVIVMNKETDMIAAIARLSKFYKHESCGQCTPCREGVGWLY 410

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            + +RLV G A+  EID L E+S+ IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+
Sbjct: 411 DITDRLVTGNAKPDEIDSLEEISRQIEGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQF 470

Query: 420 H 420
            
Sbjct: 471 Q 471


>gi|226532265|ref|NP_001148767.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays]
 gi|195621992|gb|ACG32826.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays]
          Length = 504

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 285/418 (68%), Positives = 336/418 (80%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  ++ RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGLHDPFLKGAVKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E+RI +
Sbjct: 436 IMERLKVGDAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELEKRIRE 493


>gi|311247120|ref|XP_003122487.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 2 [Sus scrofa]
          Length = 455

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 276/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 26  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 85

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 86  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 145

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 265

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLAVIPGGSSTPLIPKSVCET 325

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ Q+
Sbjct: 386 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQQF 444


>gi|315499794|ref|YP_004088597.1| NADH-quinone oxidoreductase, f subunit [Asticcacaulis excentricus
           CB 48]
 gi|315417806|gb|ADU14446.1| NADH-quinone oxidoreductase, F subunit [Asticcacaulis excentricus
           CB 48]
          Length = 437

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 301/420 (71%), Positives = 343/420 (81%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYG     L  +  RG W+    IL  GRDWII  VK SGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGFHDWGLEGAKQRGCWNATRDILSYGRDWIITNVKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK   DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH 
Sbjct: 64  STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ ERE L+AA+ + Y + L+G N+  G+D DI VHHG GAYICGEETALLE
Sbjct: 124 CYIYIRGEYVFERERLEAAIKQAYEAKLVGKNNVHGWDFDIYVHHGGGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVV TILRRGA+W++GFG +NN GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAAWFAGFGAQNNTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q   
Sbjct: 244 LFCISGHVERPCNVEEAMSIPFRQLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCEN 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+ +GSGLGTAAVIVMD+STD+IKAI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 304 MPMDFDTLRGLGSGLGTAAVIVMDKSTDLIKAIARLSYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+ KG A  +EID+L +V+K +EG TICALGDAAAWP+QGLI++FR  IE+RI  Y 
Sbjct: 364 VMERMAKGDADPKEIDILLDVTKQVEGHTICALGDAAAWPVQGLIRHFRHEIEDRIALYR 423


>gi|194860015|ref|XP_001969499.1| GG10139 [Drosophila erecta]
 gi|190661366|gb|EDV58558.1| GG10139 [Drosophila erecta]
          Length = 474

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 275/421 (65%), Positives = 329/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGAMKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P+I RRG  W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPSICRRGGVWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+  + 
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469

Query: 421 R 421
           +
Sbjct: 470 K 470


>gi|39936010|ref|NP_948286.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris CGA009]
 gi|192291665|ref|YP_001992270.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris TIE-1]
 gi|39649864|emb|CAE28386.1| NADH-ubiquinone dehydrogenase chain F [Rhodopseudomonas palustris
           CGA009]
 gi|192285414|gb|ACF01795.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 441

 Score =  546 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 298/422 (70%), Positives = 346/422 (81%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL   +L  +  RG W+    I++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWTLKGARRRGGWEGTKAIIDKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A  A+GAH
Sbjct: 61  PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLAGCAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  GY  D+ V HGAGAYICGEETALL
Sbjct: 121 TGYIYVRGEFIRERERLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFSSIGRANNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA    
Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S  GTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV++R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLDRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|195473699|ref|XP_002089130.1| GE18950 [Drosophila yakuba]
 gi|194175231|gb|EDW88842.1| GE18950 [Drosophila yakuba]
          Length = 474

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 276/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG  W++GFGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGVWFAGFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNRPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+  + 
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHA 469

Query: 421 R 421
           +
Sbjct: 470 K 470


>gi|20149568|ref|NP_009034.2| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           isoform 1 precursor [Homo sapiens]
 gi|20455501|sp|P49821|NDUV1_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH dehydrogenase
           flavoprotein 1; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|3095113|gb|AAC39722.1| NADH:ubiquinone dehydrogenase 51 kDa subunit [Homo sapiens]
 gi|3136152|gb|AAC39750.1| NADH:ubiquinone dehydrogenase 51 kDa subunit [Homo sapiens]
 gi|5138912|gb|AAD40373.1| 51kDa subunit of NADH dehydrogenase [Homo sapiens]
 gi|15990511|gb|AAH15645.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Homo
           sapiens]
 gi|48145595|emb|CAG33020.1| NDUFV1 [Homo sapiens]
 gi|119595061|gb|EAW74655.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform
           CRA_d [Homo sapiens]
 gi|119595062|gb|EAW74656.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform
           CRA_d [Homo sapiens]
 gi|123993121|gb|ABM84162.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic
           construct]
 gi|124000113|gb|ABM87565.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic
           construct]
 gi|307684728|dbj|BAJ20404.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [synthetic
           construct]
 gi|311347578|gb|ADP90734.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347580|gb|ADP90735.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347582|gb|ADP90736.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347584|gb|ADP90737.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347586|gb|ADP90738.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347588|gb|ADP90739.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347590|gb|ADP90740.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347592|gb|ADP90741.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347594|gb|ADP90742.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347596|gb|ADP90743.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347598|gb|ADP90744.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347600|gb|ADP90745.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347602|gb|ADP90746.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347604|gb|ADP90747.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347606|gb|ADP90748.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347608|gb|ADP90749.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347610|gb|ADP90750.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347612|gb|ADP90751.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347614|gb|ADP90752.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347616|gb|ADP90753.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347618|gb|ADP90754.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347620|gb|ADP90755.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347622|gb|ADP90756.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347624|gb|ADP90757.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347626|gb|ADP90758.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347628|gb|ADP90759.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347630|gb|ADP90760.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347632|gb|ADP90761.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347634|gb|ADP90762.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347636|gb|ADP90763.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347638|gb|ADP90764.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347640|gb|ADP90765.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347642|gb|ADP90766.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347644|gb|ADP90767.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347646|gb|ADP90768.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347648|gb|ADP90769.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347650|gb|ADP90770.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347652|gb|ADP90771.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347654|gb|ADP90772.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
 gi|311347656|gb|ADP90773.1| mitochondrial NADH dehydrogenase ubiquinone flavoprotein 1 [Homo
           sapiens]
          Length = 464

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|170748473|ref|YP_001754733.1| NADH dehydrogenase I subunit F [Methylobacterium radiotolerans JCM
           2831]
 gi|170654995|gb|ACB24050.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 433

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 301/419 (71%), Positives = 352/419 (84%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+DQDRIFTNLYGL    L  +  RG WD    +LE+GRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLSDQDRIFTNLYGLHSPGLEAAKKRGAWDGTKFLLEQGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++A FA+ AH 
Sbjct: 61  PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCMLACFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ E+ +LQ AVDE YA+ L+G ++   Y  DI VHHGAGAYICGEETAL+E
Sbjct: 121 CYIYIRGEYVAEKHALQKAVDEAYAARLVGQSNVHDYPFDIYVHHGAGAYICGEETALIE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV  TILRRG +W++G G +NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + ITF ELI++HCGG+RGGWDNLL  IPGGSSVP +PA Q+  
Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDRHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIVD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVAAITRISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM+R+ +G AQKREID+L+EV+K IEG TICALGDAAAWPIQGLI++FRP IE+RID+Y
Sbjct: 361 VMQRMTEGRAQKREIDMLFEVTKQIEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDRY 419


>gi|153009746|ref|YP_001370961.1| NADH dehydrogenase I subunit F [Ochrobactrum anthropi ATCC 49188]
 gi|151561634|gb|ABS15132.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum anthropi ATCC
           49188]
          Length = 435

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 315/421 (74%), Positives = 364/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDQSLKGAMARGHWDNTKGLIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG  +K G+D+D++V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKGNKCGWDMDVLVSHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PC +EE + I F +LIEKH GGIRGGWDNLLAVIPGG+S P +    M  
Sbjct: 241 LFQISGHVNTPCVIEEGLGIPFRDLIEKHGGGIRGGWDNLLAVIPGGASCPVIKGEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG+++  S  GT  +IVMD+STDIIKAI RL+ F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AIMDFDGMRDKKSSFGTGGLIVMDKSTDIIKAIARLAAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDDYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|239831691|ref|ZP_04680020.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum intermedium
           LMG 3301]
 gi|239823958|gb|EEQ95526.1| NADH-quinone oxidoreductase, F subunit [Ochrobactrum intermedium
           LMG 3301]
          Length = 435

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 318/421 (75%), Positives = 362/421 (85%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  +M+RGHWDN   ++EKGRDWII E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDRSLKGAMARGHWDNTSGLIEKGRDWIIEEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+I+RH+PHTLIEGCVIA  A+GAH 
Sbjct: 61  PTGLKWSFMPKQSDGRPHYLVVNADESEPGTCKDREILRHDPHTLIEGCVIAGCAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGEF+RERE+LQAA+DECY +GLLG  +K G+D+DI V HGAGAYICGEETALLE
Sbjct: 121 AYIYIRGEFMREREALQAAIDECYEAGLLGKGNKCGWDMDIFVTHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PC VEE + I F ELIEKH GGIRGGWDNLLAVIPGG+S P +    M  
Sbjct: 241 LFQISGHVNTPCVVEEGLGIPFRELIEKHGGGIRGGWDNLLAVIPGGASCPVIKGEDMMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG+++  S  GT  +IVMD+STDIIKAI RL+ F+KHESCGQCTPCREGTGWM R
Sbjct: 301 AIMDFDGMRDKKSSFGTGGLIVMDKSTDIIKAIARLAAFFKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG AQKREID+L++V+K IEG TICALGDAAAWPIQGLI+NFRP IE+RID Y 
Sbjct: 361 VMERMVKGNAQKREIDMLFDVTKQIEGHTICALGDAAAWPIQGLIRNFRPEIEKRIDDYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|86137594|ref|ZP_01056171.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. MED193]
 gi|85825929|gb|EAQ46127.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. MED193]
          Length = 432

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 317/422 (75%), Positives = 362/422 (85%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  + +RGHWD    ++EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLKGAQARGHWDGTSGLIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRL+ FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLAKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLVKG A   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVKGEADLEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|115392085|ref|NP_001065293.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Pan troglodytes]
 gi|115502494|sp|Q0MQI6|NDUV1_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|111661791|gb|ABH12157.1| mitochondrial complex I subunit NDUFV1 [Pan troglodytes]
          Length = 464

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|332373616|gb|AEE61949.1| unknown [Dendroctonus ponderosae]
          Length = 473

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 267/425 (62%), Positives = 329/425 (77%), Gaps = 4/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DR+FTNLYG     L  +M RG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 46  LADEDRVFTNLYGRHDWRLKGAMKRGDWYKTKEILLKGSDWIVNELKTSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM +    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  AIGA  A
Sbjct: 106 TGMKWSFMNRPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAIGAKAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEASNMQVAIAEAYQAGFLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTVNNVE+IAV P+I RRG  W++ FGR  N GTK
Sbjct: 226 SIEGKQGKPRLKPPFPADVGVFGCPTTVNNVETIAVSPSICRRGGPWFASFGRTRNSGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   EL+E H GG++GGWDNLLA+IPGGSS P +P      
Sbjct: 286 LFNISGHVNRPCTVEEEMSIPLKELVEIHAGGVQGGWDNLLAIIPGGSSTPLIPKSVCED 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL    + LGTAA+IVM++ TDI+KAI RL +FYKHESCGQCTPCREG  WM +
Sbjct: 346 VLMDFDGLVAAQTSLGTAALIVMNKQTDIVKAIARLIMFYKHESCGQCTPCREGVNWMNK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419
           ++ R V G A+  EID+L+E+SK IEGR+ICAL D AAWP+QGLI++FRP +E+R+ ++ 
Sbjct: 406 MIYRFVDGNAKPEEIDMLWEISKQIEGRSICALADGAAWPVQGLIRHFRPELEDRMRKFA 465

Query: 420 --HRC 422
              +C
Sbjct: 466 ESKQC 470


>gi|296218954|ref|XP_002755639.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 2 [Callithrix jacchus]
          Length = 455

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 276/421 (65%), Positives = 331/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 26  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 85

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 86  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 145

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 265

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 325

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ 
Sbjct: 386 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 445

Query: 421 R 421
           +
Sbjct: 446 Q 446


>gi|119595060|gb|EAW74654.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform
           CRA_c [Homo sapiens]
          Length = 457

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 28  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 88  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 147

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 148 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 207

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 208 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 267

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 268 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 327

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 328 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 387

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 388 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 446


>gi|254465162|ref|ZP_05078573.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium
           Y4I]
 gi|206686070|gb|EDZ46552.1| NADH oxidoreductase (quinone), F subunit [Rhodobacterales bacterium
           Y4I]
          Length = 432

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 321/422 (76%), Positives = 366/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ + +RGHWD    I+EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAKARGHWDGTAGIIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y  GLLG+N +  G+D DI +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDEAYDQGLLGNNAAGSGWDFDIFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            A+MD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DALMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLVKG A+  EID+L++V+K +EG TICALGDAAAWPIQGLIKNFR  IE+RI  
Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIKNFREEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|224110746|ref|XP_002315622.1| predicted protein [Populus trichocarpa]
 gi|222864662|gb|EEF01793.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 286/418 (68%), Positives = 335/418 (80%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YGL    L  +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 57  LKDEDRIFTNVYGLHDPFLKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 116

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 117 SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 176

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 177 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 236

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 237 SLEGKQGKPRLKPPFPANSGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 296

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 297 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 356

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 357 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 416

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI +
Sbjct: 417 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKE 474


>gi|158299072|ref|XP_319184.4| AGAP010039-PA [Anopheles gambiae str. PEST]
 gi|157014192|gb|EAA13847.5| AGAP010039-PA [Anopheles gambiae str. PEST]
          Length = 472

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 278/421 (66%), Positives = 331/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 45  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWILNEMKVSGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 105 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 165 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 225 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGTWFASFGRTRNSGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GGIRGGWDNLL +IPGGSS P +P      
Sbjct: 285 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGIRGGWDNLLGIIPGGSSTPVIPKSVCED 344

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  + LGTAA+IVMD+STDIIKAI RL +FYKHESCGQCTPCREG  WM +
Sbjct: 345 VLMDFDGLVQAQTSLGTAAIIVMDKSTDIIKAISRLIMFYKHESCGQCTPCREGIAWMNK 404

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE R+ QY 
Sbjct: 405 IMHRFVTGNARPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIESRMKQYE 464

Query: 421 R 421
           +
Sbjct: 465 Q 465


>gi|260656005|ref|NP_001159574.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           isoform 2 precursor [Homo sapiens]
 gi|14198176|gb|AAH08146.1| NDUFV1 protein [Homo sapiens]
 gi|119595058|gb|EAW74652.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform
           CRA_a [Homo sapiens]
          Length = 455

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 275/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 26  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 85

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 86  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 145

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 146 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 205

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 206 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 265

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 266 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 325

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 326 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 385

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 386 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 444


>gi|308510360|ref|XP_003117363.1| CRE-NUO-1 protein [Caenorhabditis remanei]
 gi|308242277|gb|EFO86229.1| CRE-NUO-1 protein [Caenorhabditis remanei]
          Length = 479

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +M+RG W    +I+ KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 46  LKDSDRIFTNLYGRHDYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I   A+GA  A
Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A++E Y +G LG +    GY+ D+ VH GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISG VN PCTVEE MS+   +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P      
Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDT 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG  W+ +
Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H
Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465

Query: 421 R 421
           +
Sbjct: 466 K 466


>gi|62897683|dbj|BAD96781.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa variant [Homo
           sapiens]
          Length = 464

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +G +G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGPIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|323138150|ref|ZP_08073223.1| NADH-quinone oxidoreductase, F subunit [Methylocystis sp. ATCC
           49242]
 gi|322396612|gb|EFX99140.1| NADH-quinone oxidoreductase, F subunit [Methylocystis sp. ATCC
           49242]
          Length = 434

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 315/420 (75%), Positives = 363/420 (86%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+D DRIFTNLYGL  +SL+ +  RG WDN   +L KGRD II EVKASGLRGRGGAGF
Sbjct: 1   MLSDSDRIFTNLYGLGDRSLAGARKRGQWDNTKALLAKGRDKIIEEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK     RPHYLV+NADESEPGTCKDR+IMR++PHTL+EG ++ASFA+GAH
Sbjct: 61  STGLKWSFMPKDVDPRRPHYLVINADESEPGTCKDREIMRNDPHTLVEGALVASFAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFI ERE+LQ AVDE YA+ L+G N+  GY  D+ VHHGAGAYICGEETAL+
Sbjct: 121 ACYIYVRGEFIAEREALQRAVDEAYAANLIGKNNVHGYPFDLYVHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG +W++G G+ NN GT
Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGPNWFAGIGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLFSISGHVN PC VEE+MSI+F ELI+ HCGG+RGGWDNLLAVIPGGSSV C+PA Q+ 
Sbjct: 241 KLFSISGHVNRPCNVEEAMSISFRELIDTHCGGVRGGWDNLLAVIPGGSSVRCVPAHQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++GSGLGTAAVIVMD+STDII+AI RL+ FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DCPMDFDSLVKLGSGLGTAAVIVMDKSTDIIRAIARLAYFYKHESCGQCTPCREGTGWMY 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV++R+V+G A K+EID+L++VSK IEG TICALGDAAAWPIQGLI +FR +IE+RIDQY
Sbjct: 361 RVVQRMVEGRANKKEIDMLFDVSKQIEGHTICALGDAAAWPIQGLITHFRDVIEQRIDQY 420


>gi|217979054|ref|YP_002363201.1| NADH dehydrogenase I subunit F [Methylocella silvestris BL2]
 gi|217504430|gb|ACK51839.1| NADH-quinone oxidoreductase, F subunit [Methylocella silvestris
           BL2]
          Length = 436

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 301/423 (71%), Positives = 355/423 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L  +++RG WDN   ++EKG+DWI+ E+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFTNLYGFGDWGLKGALARGAWDNTKGLIEKGKDWILTEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  + RP YLVVNADESEPGTCKDR+IMR++PH L+EGC +ASFA+ AH 
Sbjct: 61  PTGLKWSFMPKADAARPSYLVVNADESEPGTCKDREIMRNDPHLLVEGCFVASFAMEAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+I E + L+AA+ + Y +GL+G ++  G+  DI VH GAGAYICGEETALLE
Sbjct: 121 CYIYIRGEYILEADRLEAAIQQAYEAGLVGKDNIHGWPFDIYVHRGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FG +NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGAKNNSGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PC VEE+MSI F ELI+KHCGG+RGG DNLLAVIPGGSSVPC+PA Q+  
Sbjct: 241 LFCISGHVNKPCNVEEAMSIPFRELIDKHCGGVRGGSDNLLAVIPGGSSVPCVPAAQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+++ SGLGTAAVIVMD+STDII+AI RLS FYKHESCGQCTPCREGTGW+ R
Sbjct: 301 AAMDFDTLRDLKSGLGTAAVIVMDKSTDIIRAIARLSYFYKHESCGQCTPCREGTGWLWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+ +G AQKREID+L EV+  IEG TICALGDAAAWP+QGLI++FRP IE+RIDQY 
Sbjct: 361 VVTRMAEGRAQKREIDMLLEVTTQIEGHTICALGDAAAWPVQGLIRHFRPEIEKRIDQYA 420

Query: 421 RCN 423
              
Sbjct: 421 ANP 423


>gi|160420036|dbj|BAF93481.1| NADH dehydrogenase flavoprotein 1 [Macaca fascicularis]
          Length = 464

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|163412|gb|AAA30661.1| NADH dehydrogenase [Bos taurus]
          Length = 490

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/416 (65%), Positives = 325/416 (78%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 61  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 120

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 121 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 180

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 181 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 240

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 241 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 300

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 301 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 360

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 361 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 420

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+
Sbjct: 421 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 476


>gi|163850512|ref|YP_001638555.1| NADH dehydrogenase I subunit F [Methylobacterium extorquens PA1]
 gi|218529209|ref|YP_002420025.1| NADH dehydrogenase I subunit F [Methylobacterium chloromethanicum
           CM4]
 gi|240137577|ref|YP_002962048.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           [Methylobacterium extorquens AM1]
 gi|254560048|ref|YP_003067143.1| NADH-quinone oxidoreductase subunit F [Methylobacterium extorquens
           DM4]
 gi|163662117|gb|ABY29484.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium extorquens
           PA1]
 gi|218521512|gb|ACK82097.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium
           chloromethanicum CM4]
 gi|240007545|gb|ACS38771.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           [Methylobacterium extorquens AM1]
 gi|254267326|emb|CAX23158.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           [Methylobacterium extorquens DM4]
          Length = 433

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 300/423 (70%), Positives = 348/423 (82%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYGL    L  +  RG WD    +L+ GRDWII+E+K SGLRGRGGAGF
Sbjct: 1   MLADQDRIFTNLYGLHSPGLEAAKKRGAWDGTKFLLDMGRDWIIDEMKGSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH 
Sbjct: 61  PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ E+ +LQ AVDE Y + L+G ++   Y  DI VHHGAGAYICGEETAL+E
Sbjct: 121 CYIYIRGEYVAEKFALQRAVDEAYEARLVGPSNIHDYPFDIYVHHGAGAYICGEETALIE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV  TILRRG +W++G G +NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + ITF ELI+KHCGG+RGGWDNLL  IPGGSSVP +PA Q+  
Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDKHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVGAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+  G AQKREID+L EV+K +EG TICALGDAAAWPIQGLI++FRP IE+RIDQY 
Sbjct: 361 VLTRMAAGRAQKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDQYS 420

Query: 421 RCN 423
              
Sbjct: 421 ANP 423


>gi|303278834|ref|XP_003058710.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459870|gb|EEH57165.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 468

 Score =  545 bits (1404), Expect = e-153,   Method: Composition-based stats.
 Identities = 287/417 (68%), Positives = 337/417 (80%), Gaps = 1/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W N   ++  G DWI+NE+KASGLRGRGGAGF 
Sbjct: 42  LKDEDRIFTNLYGKHDPFLKGAMKRGDWYNTKDLMLMGPDWIVNEIKASGLRGRGGAGFP 101

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLV+NADESEPGTCKDR+IMRH+PH L+EGC+IA  A+ A   
Sbjct: 102 SGLKWSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAC 161

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A DE YA+G LG N+   G D DI +H+GAGAYICGEETAL+E
Sbjct: 162 YIYIRGEYVNERLNLERARDEAYAAGYLGKNACGSGIDFDINIHYGAGAYICGEETALIE 221

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRGA W+S FGR+NN GTK
Sbjct: 222 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVAPTILRRGAEWFSSFGRKNNAGTK 281

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLA+IPGGSSVP +P      
Sbjct: 282 LFCISGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLIPKKICEE 341

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK   SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 342 VLMDFDSLKSAQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLYN 401

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           VMER+ KG A+  EID+L E++K IEG TICALGDAAAWP+QGLI++FRP +E RI+
Sbjct: 402 VMERMKKGDARLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELEARIN 458


>gi|316933898|ref|YP_004108880.1| NADH-quinone oxidoreductase subunit F [Rhodopseudomonas palustris
           DX-1]
 gi|315601612|gb|ADU44147.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 441

 Score =  544 bits (1403), Expect = e-153,   Method: Composition-based stats.
 Identities = 298/422 (70%), Positives = 345/422 (81%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL   +L  +  RG W+    I++KGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWTLKGARRRGAWEGTKAIIDKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A  A+GAH
Sbjct: 61  PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLAGCAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  GY  D+ V HGAGAYICGEETALL
Sbjct: 121 TGYIYVRGEFIRERERLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGL+GCPTTVNNVESIAV P ILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLFGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PC VEE+M I F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA    
Sbjct: 241 KLYGISGHVNTPCVVEEAMGIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S  GTA VIVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV++R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLDRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|126740382|ref|ZP_01756070.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. SK209-2-6]
 gi|126718518|gb|EBA15232.1| NADH-quinone oxidoreductase, F subunit [Roseobacter sp. SK209-2-6]
          Length = 432

 Score =  544 bits (1403), Expect = e-153,   Method: Composition-based stats.
 Identities = 318/422 (75%), Positives = 362/422 (85%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L  + +RGHWD    ++EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLKGAQTRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLVKG A   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVKGEADLEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|268532110|ref|XP_002631183.1| C. briggsae CBR-NUO-1 protein [Caenorhabditis briggsae]
 gi|187036977|emb|CAP23643.1| CBR-NUO-1 protein [Caenorhabditis briggsae AF16]
          Length = 479

 Score =  544 bits (1403), Expect = e-153,   Method: Composition-based stats.
 Identities = 268/421 (63%), Positives = 325/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  + +RG W    +I+ KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 46  LKDSDRIFTNLYGRHDYRLKGAQARGDWYKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I   A+GA  A
Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A++E Y +G LG +    GY+ D+ VH GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISG VN PCTVEE MS+   +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P      
Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKSVCDT 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG  W+ +
Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H
Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465

Query: 421 R 421
           +
Sbjct: 466 K 466


>gi|115502495|sp|Q0MQI4|NDUV1_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|111661795|gb|ABH12159.1| mitochondrial complex I subunit NDUFV1 [Pongo pygmaeus]
          Length = 464

 Score =  544 bits (1403), Expect = e-153,   Method: Composition-based stats.
 Identities = 276/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVNYPCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNYPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|188580280|ref|YP_001923725.1| NADH dehydrogenase I subunit F [Methylobacterium populi BJ001]
 gi|179343778|gb|ACB79190.1| NADH-quinone oxidoreductase, F subunit [Methylobacterium populi
           BJ001]
          Length = 433

 Score =  544 bits (1403), Expect = e-153,   Method: Composition-based stats.
 Identities = 299/423 (70%), Positives = 348/423 (82%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+DQDRIFTNLYG     L  +  RG WD    +LE GRDWII+E+K SGLRGRGGAGF
Sbjct: 1   MLSDQDRIFTNLYGQHSPGLDAAKKRGAWDGTKFLLEMGRDWIIDEMKGSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC++ASFA+GAH 
Sbjct: 61  PTGLKWSFMPKKSDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCMLASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ E+ +LQ AVDE Y + L+G ++   Y  DI VHHGAGAYICGEETAL+E
Sbjct: 121 CYIYIRGEYVAEKFALQRAVDEAYEARLVGPSNIHDYPFDIYVHHGAGAYICGEETALIE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PRLKPPFPAN+GLYGCPTTVNNVESIAV  TILRRG +W++G G +NN GTK
Sbjct: 181 SLEGKKGMPRLKPPFPANMGLYGCPTTVNNVESIAVAGTILRRGGAWFAGLGGKNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PC VEE + ITF ELI++HCGG+RGGWDNLL  IPGGSSVP +PA Q+  
Sbjct: 241 LFCVSGHVNKPCNVEEELGITFRELIDRHCGGMRGGWDNLLCSIPGGSSVPLVPAEQIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ +GSGLGTAAVIV+D+STDI+ AI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 301 AKMDFDTLRNLGSGLGTAAVIVLDKSTDIVGAIARISYFYKHESCGQCTPCREGTGWMWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+  G AQKREID+L EV+K +EG TICALGDAAAWPIQGLI++FRP IE+RIDQY 
Sbjct: 361 VLTRMAAGRAQKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIEKRIDQYS 420

Query: 421 RCN 423
              
Sbjct: 421 ANP 423


>gi|169868608|ref|XP_001840875.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coprinopsis cinerea
           okayama7#130]
 gi|116498033|gb|EAU80928.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 516

 Score =  544 bits (1403), Expect = e-153,   Method: Composition-based stats.
 Identities = 268/426 (62%), Positives = 334/426 (78%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN+Y      +  +MSRG W    +IL KG  WII  +K SGLRGRGGAGF 
Sbjct: 51  LKDQDRIFTNVYSRHDHGIKGAMSRGDWHKTKEILLKGDAWIIQTIKDSGLRGRGGAGFP 110

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K   +   RP YLV+NADE EPGTCKDR+I+R +PH LIEGC++A  A+ A
Sbjct: 111 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREILRGDPHKLIEGCLVAGRAMNA 170

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF +E   +Q A++E YA+G +G N+   GYD D+ VH GAGAYICGEETA
Sbjct: 171 NAAYIYIRGEFYQEASHVQQAINEAYAAGFIGKNACGSGYDFDVYVHRGAGAYICGEETA 230

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGR+ N 
Sbjct: 231 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGSWFASFGRQRNE 290

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PC VEE MSI   +LIEKHCGG+RGGWDNLL ++PGGSSVP +P   
Sbjct: 291 GTKLYCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVRGGWDNLLGIVPGGSSVPIIPKDV 350

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  +GLGT AVIVMD+STD+++AI R + FYKHESCGQCTPCREGT W
Sbjct: 351 CAEVLMDFDSLKDAQTGLGTGAVIVMDKSTDVVRAISRFADFYKHESCGQCTPCREGTTW 410

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M ++M+R+V+G A +REID+L E++K IEGRTICALGDAAAWPIQGL+++FRP +E RI 
Sbjct: 411 MKKMMDRMVEGRAHQREIDMLLELTKQIEGRTICALGDAAAWPIQGLMRHFRPEVERRIA 470

Query: 418 QYHRCN 423
           ++   N
Sbjct: 471 EFQAAN 476


>gi|17531727|ref|NP_496376.1| NADH Ubiquinone Oxidoreductase family member (nuo-1)
           [Caenorhabditis elegans]
 gi|3874218|emb|CAA90435.1| C. elegans protein C09H10.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 479

 Score =  544 bits (1403), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +M+RG W    +I+ KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 46  LKDSDRIFTNLYGRHDYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+I   A+GA  A
Sbjct: 106 SGMKWGFMNKPFDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIGGVAMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A++E Y +G LG +    GY+ D+ VH GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEACILQEAINEAYKAGYLGKDCLGTGYNFDVFVHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 226 SLEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVAPTICRRGGDWFASFGRERNRGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISG VN PCTVEE MS+   +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P      
Sbjct: 286 LFCISGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDT 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG  W+ +
Sbjct: 346 VLMDFDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H
Sbjct: 406 MMWRFVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFH 465

Query: 421 R 421
           +
Sbjct: 466 K 466


>gi|85717024|ref|ZP_01047986.1| NADH-quinone oxidoreductase, F subunit [Nitrobacter sp. Nb-311A]
 gi|85696148|gb|EAQ34044.1| NADH-quinone oxidoreductase, F subunit [Nitrobacter sp. Nb-311A]
          Length = 441

 Score =  544 bits (1403), Expect = e-153,   Method: Composition-based stats.
 Identities = 300/420 (71%), Positives = 344/420 (81%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L+ +  RG WD    I++KGRDWI++E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTKAIVDKGRDWIVSEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A   +GAH
Sbjct: 61  PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGEFIRERE LQAA+DE Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 AGYIYIRGEFIRERERLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAAIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+M ITF ELI+ HCGGIRGGW+NL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCISGHVERPCNVEEAMGITFRELIDTHCGGIRGGWNNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L EV+K IEG TICALGDAAAWPIQGLI +FR  IE RIDQY
Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQIEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420


>gi|83858409|ref|ZP_00951931.1| NADH dehydrogenase I, F subunit [Oceanicaulis alexandrii HTCC2633]
 gi|83853232|gb|EAP91084.1| NADH dehydrogenase I, F subunit [Oceanicaulis alexandrii HTCC2633]
          Length = 435

 Score =  544 bits (1403), Expect = e-153,   Method: Composition-based stats.
 Identities = 291/420 (69%), Positives = 341/420 (81%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYG     L  +  RGHW+   +ILE+GRDWII+E+K SGLRGRGGAGF
Sbjct: 4   LLQDKDRIFTNLYGRHDWRLEGAKQRGHWNATKEILEQGRDWIIDEMKKSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMR++P TLIEGC+IASFA+ AH 
Sbjct: 64  PTGLKWSFMPKEVGARPHYLVVNADESEPGTCKDREIMRNDPQTLIEGCLIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+  E   ++AA+ E Y + L+G ++  G+D D+ +HHGAGAYICGEETALLE
Sbjct: 124 CYIYIRGEYQFELGRMEAAIKEAYDAKLIGKDNIHGWDFDLYIHHGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN GLYG PTTVNNVESIAV PTILRRGA W++GFGRE N GTK
Sbjct: 184 SLEGKKGQPRLKPPFPANAGLYGAPTTVNNVESIAVAPTILRRGADWFAGFGREGNAGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FSISGHVN PC VEE MSI    LIE HCGG+RGGWDNL AVIPGGSSVP LP      
Sbjct: 244 VFSISGHVNAPCNVEEVMSIPLKTLIETHCGGVRGGWDNLKAVIPGGSSVPLLPKEICDD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LKE  SGLGTAAVIVMD+STD++KAI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 304 VLMDFDALKEHRSGLGTAAVIVMDKSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V++R+ +G A+  EID L +V+  +EG TICALGDAAAWP+QGLI++FR  IE+RI+ Y 
Sbjct: 364 VLDRMSRGEAETSEIDDLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRGEIEDRINNYR 423


>gi|307195432|gb|EFN77318.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           [Harpegnathos saltator]
          Length = 470

 Score =  544 bits (1403), Expect = e-153,   Method: Composition-based stats.
 Identities = 266/424 (62%), Positives = 325/424 (76%), Gaps = 1/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+DQDRIFTNLYG     L  ++SRG W    +IL+KG DWIINE+K SGLRGRGGAGF 
Sbjct: 46  LSDQDRIFTNLYGRHDWRLKGAISRGDWHKTKEILDKGADWIINEIKVSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLV+NADE EPGTCKDR+I+RH+PH L+EGC+IA  A+GA  A
Sbjct: 106 SGMKWSFMNKPSDGRPKYLVINADEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GY+ DI V  GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACNSGYNFDIFVQRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RR  +W++ FGR  N GTK
Sbjct: 226 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRSGAWFASFGRPRNHGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNL+ VIPGGSS P +P      
Sbjct: 286 LFNISGHVNKPCTVEEEMSIPLKELIERHAGGVIGGWDNLMGVIPGGSSTPVIPKSVCDT 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            ++D+D L  + S  GTAAVIVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 346 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMYK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R V+G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE R+ Q  
Sbjct: 406 ILKRFVEGNAEMHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMKQQK 465

Query: 421 RCNF 424
              F
Sbjct: 466 EVAF 469


>gi|73982783|ref|XP_851761.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 2 [Canis familiaris]
          Length = 460

 Score =  544 bits (1402), Expect = e-153,   Method: Composition-based stats.
 Identities = 273/421 (64%), Positives = 326/421 (77%), Gaps = 5/421 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG    WDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGG----WDNLLAVIPGGSSTPLIPKSVCET 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 331 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ 
Sbjct: 391 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 450

Query: 421 R 421
           +
Sbjct: 451 Q 451


>gi|548387|sp|P25708|NDUV1_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH dehydrogenase
           flavoprotein 1; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|109939909|gb|AAI18305.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Bos taurus]
 gi|296471573|gb|DAA13688.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Bos taurus]
          Length = 464

 Score =  544 bits (1402), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/416 (65%), Positives = 325/416 (78%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 450


>gi|260434174|ref|ZP_05788145.1| NADH oxidoreductase (quinone), f subunit [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260418002|gb|EEX11261.1| NADH oxidoreductase (quinone), f subunit [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 432

 Score =  544 bits (1402), Expect = e-153,   Method: Composition-based stats.
 Identities = 317/422 (75%), Positives = 364/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD    ++ KGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNIYGMHERTLKGAQARGHWDGTADLIAKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N +  G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIETHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ ++GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRNDLGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLV+G A+  EID+L+EV+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVRGEAELEEIDMLFEVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 RK 422


>gi|87200309|ref|YP_497566.1| NADH dehydrogenase I subunit F [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135990|gb|ABD26732.1| NADH dehydrogenase subunit F [Novosphingobium aromaticivorans DSM
           12444]
          Length = 428

 Score =  544 bits (1402), Expect = e-153,   Method: Composition-based stats.
 Identities = 301/422 (71%), Positives = 350/422 (82%), Gaps = 2/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG Q  +L+ + +RG WDN   ++E+G+D II E+KASGLRGRGGAGF 
Sbjct: 3   LQDKDRIFTNVYGFQPWNLAAARARGDWDNTKALMERGQDAIIEEIKASGLRGRGGAGFP 62

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D    +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA +A+ A  
Sbjct: 63  TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGYAMRARA 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+IRE ++L AAV E Y +GL+G N+   GYD D+ VH GAGAYICGEETA++
Sbjct: 123 AYIYIRGEYIREADTLFAAVQEAYDAGLIGKNASGSGYDFDVFVHRGAGAYICGEETAMI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRGASW+S FGRENN+GT
Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGASWFSSFGRENNKGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE MSI F ELIEKHCGGIRGG DNLLAVIPGGSSVP +PA ++ 
Sbjct: 243 KLFQISGHVNRPCVVEEEMSIPFSELIEKHCGGIRGGKDNLLAVIPGGSSVPLVPAAEIW 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 303 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMERL  G A   EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP IE RI + 
Sbjct: 363 RVMERLRTGDADVEEIDMLFNVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAEN 422

Query: 420 HR 421
            R
Sbjct: 423 AR 424


>gi|281203657|gb|EFA77854.1| ubiquinone oxidoreductase [Polysphondylium pallidum PN500]
          Length = 481

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 279/420 (66%), Positives = 331/420 (78%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  +  RG W     I+ KG+DWI+ E+ ASGLRGRGGAGF 
Sbjct: 54  LKDQDRIFTNLYGEHDVYLKGAEKRGDWYRTKDIIGKGKDWILKEMMASGLRGRGGAGFP 113

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK  + RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA FA+ A  A
Sbjct: 114 SGLKWSFMPKQSTGRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGFAMRACAA 173

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E + L+ A+DE Y +G LG+N+   GY  D+ VH GAGAYICGEETAL+E
Sbjct: 174 YIYIRGEFHHEAKVLEKAIDEAYKAGYLGANACGTGYHFDVYVHRGAGAYICGEETALIE 233

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA  GLYGCPTTV NVE++AV PTILRRG SW++GFGR  N GTK
Sbjct: 234 SLEGKQGKPRLKPPFPAMSGLYGCPTTVTNVETVAVAPTILRRGGSWFAGFGRPKNSGTK 293

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   ELI+KHCGG+ GGWDNLL VIPGGSSVP +P      
Sbjct: 294 LYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLLGVIPGGSSVPVIPKDICDD 353

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+ + SGLGTAAVIVMD+STDII AI RLS FYKHESCGQC+PCREGTGW+  
Sbjct: 354 VLMDFDDLRRVRSGLGTAAVIVMDKSTDIIAAIARLSKFYKHESCGQCSPCREGTGWLWD 413

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           + ERLV G A+  E+D+L E+S+ IEG TICALGDAAAWP+QGLI+++RP IE+RI  + 
Sbjct: 414 ITERLVTGDAKLDEVDMLEEISRQIEGHTICALGDAAAWPVQGLIRHYRPEIEQRIQDFQ 473


>gi|326490041|dbj|BAJ94094.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326490708|dbj|BAJ90021.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 505

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 289/418 (69%), Positives = 336/418 (80%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W+    ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGLHDPFLKGAMKRGDWNRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YASGLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYASGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAV+VMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVMVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI  
Sbjct: 436 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRD 493


>gi|301771850|ref|XP_002921334.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like [Ailuropoda melanoleuca]
          Length = 461

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 274/419 (65%), Positives = 325/419 (77%), Gaps = 5/419 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 36  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 95

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 96  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 155

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 156 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVVRGAGAYICGEETALIE 215

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 216 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 275

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG    WDNLLAVIPGGSS P +P      
Sbjct: 276 LFNISGHVNHPCTVEEEMSVPLRELIEKHAGG----WDNLLAVIPGGSSTPLIPKSVCET 331

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 332 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 391

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 392 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 450


>gi|294011313|ref|YP_003544773.1| NADH dehydrogenase I chain F [Sphingobium japonicum UT26S]
 gi|292674643|dbj|BAI96161.1| NADH dehydrogenase I chain F [Sphingobium japonicum UT26S]
          Length = 438

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 299/421 (71%), Positives = 348/421 (82%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG Q  ++  +M RG WDN  K+LE G+D II  +KASGLRGRGGAGF 
Sbjct: 8   LADKDRIFTNVYGFQDWAIDAAMKRGDWDNTKKLLEIGQDEIIERIKASGLRGRGGAGFP 67

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D    +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A  
Sbjct: 68  TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRARA 127

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFI E + L AAV++ Y  G LG N+   GYD D+ VH GAGAYICGEETA +
Sbjct: 128 AYIYIRGEFIYEAKVLFAAVEQAYEKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 187

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRG++W+S FGRENN+GT
Sbjct: 188 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGSAWFSSFGRENNKGT 247

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEESM I+F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA Q+ 
Sbjct: 248 KLFQISGHVNKPCVVEESMGISFKELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAQIM 307

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 308 DAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 367

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMERL  G A + EID+L++V+K +EG TICALGDAAAWPIQGLI++FRP IE RI++ 
Sbjct: 368 RVMERLRTGDADQSEIDMLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRINEN 427

Query: 420 H 420
            
Sbjct: 428 K 428


>gi|319408584|emb|CBI82239.1| NADH dehydrogenase I chain F [Bartonella schoenbuchensis R1]
          Length = 435

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 320/421 (76%), Positives = 369/421 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           MLTD+DRIFTN+YGL+ KSL  +M RGHWD    I+EKGRDWI++EVK SGLRGRGGAGF
Sbjct: 1   MLTDKDRIFTNIYGLKDKSLKGAMLRGHWDGTKAIVEKGRDWIVDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FAIGA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAIGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIY+RGE+IRERE+LQAA+DECY +GLLG  +K G+  DII+HHGAGAYICGEETALLE
Sbjct: 121 AFIYIRGEYIREREALQAAIDECYDAGLLGKKTKCGHVCDIIIHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPT VNNVESIAV+PTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTIVNNVESIAVIPTILRRGASWFSSIGRSNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+DG++++GS  GT  VIVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AVMDFDGMRDVGSSFGTGGVIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFR  IE+RID Y 
Sbjct: 361 LLERMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRSEIEQRIDDYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|332024708|gb|EGI64897.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           [Acromyrmex echinatior]
          Length = 470

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 264/423 (62%), Positives = 325/423 (76%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +MSRG W    +I++KG DWIINE+K SGLRGRGGAGF 
Sbjct: 45  LADEDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIIDKGADWIINEIKISGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLV+N DE EPGTCKDR+I+RH+PH L+EGC+IA  A+GA  A
Sbjct: 105 SGMKWSFMNKPSDGRPKYLVINGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD DI V  GAGAYICGEETAL+E
Sbjct: 165 YIYIRGEFYNEASNMQVAIAEAYQAGLIGKNACNSGYDFDIFVQRGAGAYICGEETALIE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 225 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L++ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 285 LYNISGHVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDT 344

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            ++D+D L  + S  GTAAVIVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 345 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMYK 404

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R V+G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE R+++  
Sbjct: 405 ILKRFVEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARMNEQK 464

Query: 421 RCN 423
           R  
Sbjct: 465 RAT 467


>gi|254437215|ref|ZP_05050709.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter
           antarcticus 307]
 gi|198252661|gb|EDY76975.1| NADH oxidoreductase (quinone), F subunit [Octadecabacter
           antarcticus 307]
          Length = 428

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 312/421 (74%), Positives = 358/421 (85%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L  + +RGHWD    I++KGR+WII+ +KASGLRGRGGAGF
Sbjct: 2   MLADKDRIFTNLYGMHDRTLKGAQARGHWDGTAGIIKKGREWIIDNMKASGLRGRGGAGF 61

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ A+ 
Sbjct: 62  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNANA 121

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRE+E+LQAA+DECY +G++G N+ K G+D DI + HGAGAYICGEETALL
Sbjct: 122 CYIYIRGEYIREKEALQAAIDECYEAGMVGKNASKSGWDFDIYLVHGAGAYICGEETALL 181

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG+ W++GFGR NN GT
Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGSDWFAGFGRPNNAGT 241

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEESMSI F+ELIEKHC GIRGGW NL AVIPGG+SVP +    MR
Sbjct: 242 KLFAISGHVNNPCVVEESMSIPFEELIEKHCDGIRGGWGNLKAVIPGGASVPMVRGENMR 301

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D LKE GS LGTAAVIVMD+ TD+IKAIWRL+ FYKHESCGQCTPCREGTGWMM
Sbjct: 302 DAIMDFDALKEKGSSLGTAAVIVMDKDTDVIKAIWRLAKFYKHESCGQCTPCREGTGWMM 361

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMERLVKG A   EID+L +V+K +EG TICALGDAAAWPIQGLIKNFR  IE+RI   
Sbjct: 362 RVMERLVKGDADVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIKNFRGEIEDRIAHK 421

Query: 420 H 420
            
Sbjct: 422 R 422


>gi|331226611|ref|XP_003325975.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309304965|gb|EFP81556.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 511

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/426 (63%), Positives = 328/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N Y      L  + +RG W     I+ KG ++II E+K SGLRGRGGAGF 
Sbjct: 49  LKDQDRIFQNAYMKHDHLLQGAQARGDWHKTKDIILKGHEFIIKEIKESGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 109 SGLKWSFMNKPGFEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 168

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI E   LQAA+DE Y +GL+G N+   GYD D+ +H GAGAYICGEETA
Sbjct: 169 SAAYIYIRGEFIMEAHHLQAAIDEAYKAGLIGKNACNSGYDFDVYLHRGAGAYICGEETA 228

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI+RRGASW++ FGRE N 
Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIIRRGASWFNSFGRERNS 288

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PC VEE MSI   +LI+KHCGG+ GGWDNLL ++PGGSSVP L   +
Sbjct: 289 GTKLFCISGHVNNPCVVEEEMSIPLRDLIDKHCGGVIGGWDNLLGIVPGGSSVPVLTKPE 348

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
              A+MD+D LK++ SGLGT AVIVM++STDI+ AI R + FYKHESCGQCTPCREGT W
Sbjct: 349 CEEALMDFDSLKDLYSGLGTGAVIVMNKSTDIVAAIARFAKFYKHESCGQCTPCREGTTW 408

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M ++M+R V G A +REID+L+E+++ IE  TICALGDAAAWPIQGL++ F+P IE RI 
Sbjct: 409 MEKMMDRFVVGRAHEREIDMLWELTRQIENHTICALGDAAAWPIQGLLRKFKPEIEARIQ 468

Query: 418 QYHRCN 423
            +   N
Sbjct: 469 DFRAKN 474


>gi|89071182|ref|ZP_01158373.1| NADH-quinone oxidoreductase, F subunit [Oceanicola granulosus
           HTCC2516]
 gi|89043278|gb|EAR49504.1| NADH-quinone oxidoreductase, F subunit [Oceanicola granulosus
           HTCC2516]
          Length = 428

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 317/422 (75%), Positives = 364/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    ++ KGR+WII E+K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRTLAGAKKRGHWDGTAGLIGKGREWIIEEMKGSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N +  G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC VEE+MSI+F+ELI+KHCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAVSGHVNQPCVVEEAMSISFEELIDKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLV+G A   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVRGDAAVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIKH 420

Query: 419 YH 420
             
Sbjct: 421 KR 422


>gi|1408306|gb|AAB03672.1| ndufv1 [Dictyostelium discoideum]
          Length = 479

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 274/421 (65%), Positives = 330/421 (78%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +++RG W     I++KG+DWI+ E+ ASGLRGRGGAGF 
Sbjct: 51  LKDKDRIFTNLYGEHDVYLKGAIARGDWYKTKNIIDKGKDWILKEMMASGLRGRGGAGFP 110

Query: 62  TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMP+  S DRP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A  
Sbjct: 111 SGLKWSFMPETTSKDRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACA 170

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E + L+ A+DE Y +GL+G N+   GY  D+ VH GAGAYICGEETAL+
Sbjct: 171 AYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHRGAGAYICGEETALI 230

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK+G+PRLKPPFPA  GLYGCPTTV NVE++AV PTILRRG +W++ FGR  N GT
Sbjct: 231 GSIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGT 290

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELI+KHCGG+ GGWDNL  VIPGGSSVP LP     
Sbjct: 291 KLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKGVIPGGSSVPVLPKNICD 350

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L++  SGLGTAAVIVM++ TD+I AI RLS FYKHESCGQCTPCREG GW+ 
Sbjct: 351 NVLMDFDDLRQHRSGLGTAAVIVMNKETDMIAAIARLSKFYKHESCGQCTPCREGVGWLY 410

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            + +RLV G A+  EID L E+S+ IEG TICALGDAAAWP+QGLI++FRP IE+RI Q+
Sbjct: 411 DITDRLVTGNAKPDEIDSLEEISRQIEGHTICALGDAAAWPVQGLIRHFRPEIEDRIKQF 470

Query: 420 H 420
            
Sbjct: 471 Q 471


>gi|62510804|sp|Q8HXQ9|NDUV1_MACFA RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|23574759|dbj|BAC20599.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Macaca
           fascicularis]
          Length = 464

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 273/419 (65%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYK+ESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKYESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|198415470|ref|XP_002131638.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa [Ciona intestinalis]
          Length = 457

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 274/421 (65%), Positives = 327/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  +M RG W    +I+ KG DW++ ++K SGLRGRGGAGF 
Sbjct: 30  LKDQDRIFTNLYGRHDWKLKGAMQRGDWYKTKEIILKGNDWVLQQIKESGLRGRGGAGFP 89

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM +    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A  A+GA  A
Sbjct: 90  TGMKWSFMNRPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLVAGVAMGARAA 149

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +L  A+ E Y +GL+G +S   GYD DI VH GAGAYICGEET+L+E
Sbjct: 150 YIYIRGEFYNEASNLNVAIKEAYDAGLIGKDSCGSGYDFDIFVHRGAGAYICGEETSLIE 209

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA VG++GCPTTV NVE++AV PTI RR   W++GFGRE N GTK
Sbjct: 210 SLEGKQGKPRLKPPFPAEVGVFGCPTTVANVETVAVAPTICRRTPQWFAGFGRERNTGTK 269

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE+MSI   ELIE+HCGG+RGGWDNLL VIPGGSS P LP      
Sbjct: 270 LFNISGHVNHPCTVEETMSIPMKELIERHCGGVRGGWDNLLCVIPGGSSTPLLPKNICDD 329

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L E+ SGLGTAA+IVMD+STD+I+AI RL  FYKHESCGQCTPCREG  WM  
Sbjct: 330 VLMDFDALVEVTSGLGTAALIVMDKSTDVIRAIARLMEFYKHESCGQCTPCREGVTWMND 389

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            ++R  +G A   EID L+E+SK +EG TICALGD AAWP QGLI++ RP+IEER+  YH
Sbjct: 390 TLQRFTRGDADPEEIDSLWEISKQVEGHTICALGDGAAWPAQGLIRHMRPVIEERMKAYH 449

Query: 421 R 421
           +
Sbjct: 450 Q 450


>gi|19526814|ref|NP_598427.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Mus musculus]
 gi|47117274|sp|Q91YT0|NDUV1_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 51 kDa subunit; Flags: Precursor
 gi|15928709|gb|AAH14818.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Mus musculus]
 gi|26344485|dbj|BAC35893.1| unnamed protein product [Mus musculus]
 gi|27469887|gb|AAH41682.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Mus musculus]
 gi|148701043|gb|EDL32990.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_b [Mus
           musculus]
          Length = 464

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 273/421 (64%), Positives = 329/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGPDWILGEMKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+    YD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++ 
Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRFA 454

Query: 421 R 421
           +
Sbjct: 455 Q 455


>gi|182679348|ref|YP_001833494.1| NADH dehydrogenase I subunit F [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635231|gb|ACB96005.1| NADH-quinone oxidoreductase, F subunit [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 436

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 303/423 (71%), Positives = 355/423 (83%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L  +M+RG WDN   +++KG+DWI+NE+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFTNLYGYGDWGLKGAMARGAWDNTKGLIDKGKDWILNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMR++PH LIEGC+IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKADPARPSYLVVNADESEPGTCKDREIMRNDPHLLIEGCLIASFAMEAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+I ERE L+AAV + Y + L+G N+  G+  DI VHHGAGAYICGEETALLE
Sbjct: 121 CYIYIRGEYIFERERLEAAVAQAYEAKLVGKNNIHGWPFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKG PR+KPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA+W+S FG +NN GTK
Sbjct: 181 SLEGKKGMPRMKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGAKNNAGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN  C VEE+MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVPC+PA ++  
Sbjct: 241 LFCISGHVNKRCNVEEAMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPCVPAHEIID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A MD+D L+ + SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGW+ R
Sbjct: 301 APMDFDTLRGLKSGLGTAAVIVMDKSTDIVRAIARLSHFYKHESCGQCTPCREGTGWLWR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R+ +G AQKREID+L +V+  IEG TICALGDAAAWP+QGLI++FR  IE++IDQY 
Sbjct: 361 VMTRMAEGRAQKREIDMLLDVTTRIEGHTICALGDAAAWPVQGLIRHFRSEIEKKIDQYA 420

Query: 421 RCN 423
              
Sbjct: 421 ANP 423


>gi|156396709|ref|XP_001637535.1| predicted protein [Nematostella vectensis]
 gi|156224648|gb|EDO45472.1| predicted protein [Nematostella vectensis]
          Length = 477

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 258/419 (61%), Positives = 323/419 (77%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +I+ KG +WI+ E+  SGLRGRGGAGF 
Sbjct: 46  LKDEDRIFTNLYGRHDWKLKGAISRGDWYKTKEIILKGPEWILKEITTSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+IMR++PH LIEGC++A  ++GA  A
Sbjct: 106 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGASMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A++E Y  GL+G N+   G+D D+ +H GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEASNMQVAINEAYKKGLIGKNACGSGFDFDVYMHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG  W+SGFGR  N GTK
Sbjct: 226 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGEWFSGFGRPRNTGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MS+   +LIE+H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 286 LFNISGHVNNPCTVEEEMSVPLKDLIERHAGGVIGGWDNLLGVIPGGSSTPLIPLSVCDD 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAA+IV ++  D+IK I RL  FYKHESCGQCTPCREG  WM++
Sbjct: 346 VLMDFDALVQAQTGLGTAALIVFNKQADVIKGIARLIEFYKHESCGQCTPCREGCNWMLK 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R  +G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI+++RP IE+R+ ++
Sbjct: 406 IMNRFTEGNAKTSEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHYRPEIEQRMKEF 464


>gi|260574764|ref|ZP_05842767.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sp. SW2]
 gi|259023181|gb|EEW26474.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sp. SW2]
          Length = 431

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 305/421 (72%), Positives = 352/421 (83%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL+ +  RG+WD     L  GRDWI+++VKASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHDRSLAGARKRGNWDGTAGFLAHGRDWIVDQVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPKV   RP YLV+NADESEPGTCKDR+IMRH+PHTL+EG +IA FA+GA  
Sbjct: 61  PTGLKWSFMPKVSDGRPAYLVINADESEPGTCKDREIMRHDPHTLVEGALIAGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GL+G N+   GY+ D+ + HGAGAYICGEETA+L
Sbjct: 121 GYIYIRGEYIREREALQAAIDEAYDAGLIGKNACGSGYNYDLYLVHGAGAYICGEETAML 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGASW++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAASGLYGCPTTVNNVESIAVVPTILRRGASWFAGFGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+MSI   EL++KHCGG+RGGW NL AVIPGGSSVP L A Q  
Sbjct: 241 KLFGISGHVVNPCVVEEAMSIPLRELLDKHCGGVRGGWKNLKAVIPGGSSVPMLNAAQCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMD+D L+E  SGLGTAAVIVMD+STD+IKAIWRLS FYKHESCGQCTPCREGTGWMM
Sbjct: 301 EAIMDFDWLREQRSGLGTAAVIVMDQSTDVIKAIWRLSKFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLVKG A+  EID+L  V+K +EG TICALGDAAAWPIQGL+++FR  IE+RI   
Sbjct: 361 RVMDRLVKGEAEIEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLVRHFREEIEDRIKAR 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|134110700|ref|XP_776177.1| hypothetical protein CNBD2240 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258845|gb|EAL21530.1| hypothetical protein CNBD2240 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 534

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/428 (62%), Positives = 331/428 (77%), Gaps = 4/428 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNL+      +  +++RG W     I+ KG  W+I  VK SGLRGRGGAGF 
Sbjct: 75  LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWLIQTVKDSGLRGRGGAGFP 134

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K   +   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 135 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 194

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF +E   +Q A+DE Y +GL+G N+   GYD D+ +H GAGAYICGEETA
Sbjct: 195 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 254

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N 
Sbjct: 255 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 314

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F +SGHVN PC VEE MSI   EL+EKHCGG+RGGW NL  ++PGGSSVP +    
Sbjct: 315 GTKVFCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVVNRET 374

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK+ G+ LGT AVIVMD STD+I AI R S FYKHESCGQCTPCREGT W
Sbjct: 375 SEKCLMDYDSLKDNGTSLGTGAVIVMDNSTDMIAAIARFSKFYKHESCGQCTPCREGTSW 434

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ 
Sbjct: 435 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 494

Query: 418 QYHRCNFQ 425
           Q+H  N Q
Sbjct: 495 QFHAKNGQ 502


>gi|168003423|ref|XP_001754412.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694514|gb|EDQ80862.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 462

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 286/418 (68%), Positives = 336/418 (80%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L+ +  RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 31  LKDEDRIFTNLYGLHDPFLAGAKKRGDWYRTKDLVHKGTDWIVNEVKKSGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 91  SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAA 150

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +LQ A+ ECY  GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 151 YIYIRGEYVNERLNLQKALHECYKEGLLGKNACSTGYDFDVYIHYGAGAYICGEETALLE 210

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 211 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNSGTK 270

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 271 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W+  
Sbjct: 331 VLMDFDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGSPWLWT 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI +
Sbjct: 391 MMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRILE 448


>gi|71004398|ref|XP_756865.1| hypothetical protein UM00718.1 [Ustilago maydis 521]
 gi|46095874|gb|EAK81107.1| hypothetical protein UM00718.1 [Ustilago maydis 521]
          Length = 846

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 267/426 (62%), Positives = 327/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N Y      L  + +RG W     IL KG DWII+++K SG+RGRGGAGF 
Sbjct: 387 LRDQDRIFQNAYMRHDHGLKGAKARGDWHRTKDILLKGHDWIISQMKESGMRGRGGAGFP 446

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K   +   RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 447 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREIMRGDPHKLIEGCLVAGRAMNA 506

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IYVRGEF  E   LQ A+ E YA GL+G N+   GYD D+ VH GAGAYICGEETA
Sbjct: 507 NAAYIYVRGEFYLEVAHLQHAIKEAYADGLIGKNACGSGYDFDVYVHKGAGAYICGEETA 566

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++A  PTI+RRG SW++GFGR+ N+
Sbjct: 567 LIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAAAPTIIRRGPSWFAGFGRDKNQ 626

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF+ISGHVN PC VEE MSI   ELIE+HCGG+RGGWDNLL ++PGGSSVP LP  +
Sbjct: 627 GTKLFAISGHVNNPCVVEEEMSIPLQELIERHCGGVRGGWDNLLGIVPGGSSVPILPKHK 686

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D L+E  S LGT AVIVMD++TD+++AI R + FYKHESCGQCTPCREGT W
Sbjct: 687 CEQVLMDFDSLRENQSSLGTGAVIVMDKTTDVVQAISRFAKFYKHESCGQCTPCREGTTW 746

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +MER  +G    REID++YE++K +EG TICAL DAAAWPIQGL++ FRP IEER+ 
Sbjct: 747 LANMMERFEEGRGNNREIDMIYELTKQMEGHTICALADAAAWPIQGLLRWFRPEIEERMR 806

Query: 418 QYHRCN 423
            Y   N
Sbjct: 807 LYQEKN 812


>gi|254475856|ref|ZP_05089242.1| NADH oxidoreductase (quinone), F subunit [Ruegeria sp. R11]
 gi|214030099|gb|EEB70934.1| NADH oxidoreductase (quinone), F subunit [Ruegeria sp. R11]
          Length = 432

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 317/422 (75%), Positives = 363/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    ++EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDEAYDNGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLVKG A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|148222918|ref|NP_001080215.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Xenopus
           laevis]
 gi|27370996|gb|AAH41320.1| Ndufv1 protein [Xenopus laevis]
 gi|77748340|gb|AAI06321.1| Ndufv1 protein [Xenopus laevis]
          Length = 471

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 272/425 (64%), Positives = 330/425 (77%), Gaps = 1/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  ++SRG W    +IL KG DWI  EVK SGLRGRGGAGF 
Sbjct: 41  LSDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWIQGEVKTSGLRGRGGAGFP 100

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  ++GA  A
Sbjct: 101 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 160

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ AV E Y++GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 161 YIYIRGEFYNEASNLQVAVREAYSAGLIGRNACGSGYDFDVFVVRGAGAYICGEETALIE 220

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK
Sbjct: 221 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNSGTK 280

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 281 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAVIPGGSSTPLIPRSVCET 340

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAA+IVM++STDI++AI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 341 VLMDFDALVQAQTGLGTAAIIVMNKSTDIVRAIARLIEFYKHESCGQCTPCREGVDWMNK 400

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R+ +G A   EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+  + 
Sbjct: 401 VMWRMCRGDAHVDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEQRMKLFD 460

Query: 421 RCNFQ 425
               Q
Sbjct: 461 TAKRQ 465


>gi|58265992|ref|XP_570152.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|57226385|gb|AAW42845.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 534

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/428 (62%), Positives = 331/428 (77%), Gaps = 4/428 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNL+      +  +++RG W     I+ KG  W+I  VK SGLRGRGGAGF 
Sbjct: 75  LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWLIQTVKDSGLRGRGGAGFP 134

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K   +   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 135 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 194

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF +E   +Q A+DE Y +GL+G N+   GYD D+ +H GAGAYICGEETA
Sbjct: 195 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 254

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N 
Sbjct: 255 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 314

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F +SGHVN PC VEE MSI   EL+EKHCGG+RGGW NL  ++PGGSSVP +    
Sbjct: 315 GTKVFCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVVNRET 374

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK+ G+ LGT AVIVMD STD+I AI R S FYKHESCGQCTPCREGT W
Sbjct: 375 SEKCLMDYDSLKDNGTSLGTGAVIVMDNSTDMIAAIARFSKFYKHESCGQCTPCREGTSW 434

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ 
Sbjct: 435 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 494

Query: 418 QYHRCNFQ 425
           Q+H  N Q
Sbjct: 495 QFHAKNGQ 502


>gi|58332830|ref|NP_001011491.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Xenopus
           (Silurana) tropicalis]
 gi|57033091|gb|AAH88876.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Xenopus
           (Silurana) tropicalis]
 gi|89269885|emb|CAJ83800.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Xenopus (Silurana)
           tropicalis]
          Length = 468

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 271/417 (64%), Positives = 331/417 (79%), Gaps = 1/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+KASGLRGRGGAGF 
Sbjct: 40  LSDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWILGEIKASGLRGRGGAGFP 99

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  ++GA  A
Sbjct: 100 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 159

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ AV E Y++GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 160 YIYIRGEFYNEASNLQVAVREAYSAGLIGRNACGSGYDFDVFVVRGAGAYICGEETALIE 219

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK
Sbjct: 220 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNAGTK 279

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 280 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVTGGWDNLLAVIPGGSSTPLIPQSVCET 339

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAA+IVM++STDI++AI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 340 VLMDFDALVQAQTGLGTAAIIVMNKSTDIVRAIARLIEFYKHESCGQCTPCREGVDWMNK 399

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           VM R+ +G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ 
Sbjct: 400 VMWRMCQGDARVDEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEKRMK 456


>gi|296536151|ref|ZP_06898279.1| NADH-quinone oxidoreductase subunit F [Roseomonas cervicalis ATCC
           49957]
 gi|296263522|gb|EFH10019.1| NADH-quinone oxidoreductase subunit F [Roseomonas cervicalis ATCC
           49957]
          Length = 435

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 286/422 (67%), Positives = 331/422 (78%), Gaps = 2/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYGL   +L ++  RG WD    I+ KGRDWII E+K SGLRGRGGAGF 
Sbjct: 3   LSDKDRIFTNLYGLHPWNLKEARRRGSWDGTAAIIAKGRDWIIEEMKQSGLRGRGGAGFP 62

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D    YLVVN DESEPGTCKDRDI+R++PH LIEGC+ A   +GAH 
Sbjct: 63  TGMKWSFMPKSNPDGRPSYLVVNGDESEPGTCKDRDIIRNDPHLLIEGCLYAGVGMGAHA 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVRGE+  E + LQAA+DE Y +GLLG N+   G+D D+ VH GAGAYICGEETAL+
Sbjct: 123 GYIYVRGEYYNEIQILQAAIDEAYEAGLLGPNAAGSGWDFDLYVHRGAGAYICGEETALI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA VGLYGCPTTVNNVE+IAVVP IL+RGASW+S FGR  N GT
Sbjct: 183 ESLEGKKGMPRLKPPFPAAVGLYGCPTTVNNVETIAVVPAILKRGASWFSSFGRPKNVGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F I GHVN PC VE  MSI   ELIE++ GG+RGGWDNLLAVIPGGSS P LP     
Sbjct: 243 KIFCIQGHVNKPCNVEAEMSIPMRELIERYAGGVRGGWDNLLAVIPGGSSTPLLPKHICD 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E  SGLGTA VIVMD+STDIIKAI RL+ FYKHESCGQCTPCREG GW  
Sbjct: 303 DVLMDFDALREHKSGLGTAGVIVMDKSTDIIKAIARLAQFYKHESCGQCTPCREGMGWQK 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M+R+V+G A+  EIDLL  V++ IEG TICAL D   WP+QGLI++FRPL+EERI QY
Sbjct: 363 RLMDRMVEGRAEIEEIDLLEGVTRQIEGHTICALADGGVWPVQGLIRHFRPLMEERIRQY 422

Query: 420 HR 421
            +
Sbjct: 423 KQ 424


>gi|226486986|emb|CAX75358.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma
           japonicum]
          Length = 476

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M RGHW    +I+ KG DWII E+K SGLRGRGGAGF 
Sbjct: 42  LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 101

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA  A+GA+ A
Sbjct: 102 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 161

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   G++ D+ +H GAGAYICGEETAL+E
Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 221

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 222 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 281

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG+ GGWDNLLAVIPGGSS P LP      
Sbjct: 282 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 341

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAA+IVM+RS D++  I RL  FY+HESCGQCTPCREG  WM +
Sbjct: 342 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 401

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R  ++
Sbjct: 402 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 460


>gi|226486984|emb|CAX75357.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma
           japonicum]
          Length = 476

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M RGHW    +I+ KG DWII E+K SGLRGRGGAGF 
Sbjct: 42  LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 101

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA  A+GA+ A
Sbjct: 102 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 161

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   G++ D+ +H GAGAYICGEETAL+E
Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 221

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 222 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 281

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG+ GGWDNLLAVIPGGSS P LP      
Sbjct: 282 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 341

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAA+IVM+RS D++  I RL  FY+HESCGQCTPCREG  WM +
Sbjct: 342 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 401

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R  ++
Sbjct: 402 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 460


>gi|99080589|ref|YP_612743.1| NADH dehydrogenase I subunit F [Ruegeria sp. TM1040]
 gi|99036869|gb|ABF63481.1| NADH-quinone oxidoreductase F subunit [Ruegeria sp. TM1040]
          Length = 432

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 316/422 (74%), Positives = 365/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    ++EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAQKRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+   +MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDI+KAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIVKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVRGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|255078918|ref|XP_002503039.1| predicted protein [Micromonas sp. RCC299]
 gi|226518305|gb|ACO64297.1| predicted protein [Micromonas sp. RCC299]
          Length = 441

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 284/417 (68%), Positives = 338/417 (81%), Gaps = 1/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M RG W N  +++  G DWI+NE+KASGLRGRGGAGF 
Sbjct: 15  LSDEDRIFTNLYGKHDPFLKGAMKRGDWYNTKELMLMGPDWIVNEMKASGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLV+NADESEPGTCKDR+IMRH+PH L+EGC+IA  A+ A   
Sbjct: 75  SGLKWSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAC 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L  A DE YA+G LG N+   G D DI +H+GAGAYICGEETAL+E
Sbjct: 135 YIYIRGEYVNERLALMKARDEAYAAGYLGKNACGSGIDFDINIHYGAGAYICGEETALIE 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRGA W++ FGR+NN GTK
Sbjct: 195 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVAPTILRRGADWFASFGRKNNAGTK 254

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   +LIEKHCGG+RGGWDNLLA+IPGGSSVP +P      
Sbjct: 255 LFCISGHVNKPCTVEEEMSIPLKDLIEKHCGGVRGGWDNLLAIIPGGSSVPLIPKSVCEE 314

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK   SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 315 VLMDFDSLKSAQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLYA 374

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +MER+ KG A+  EID+L E++K IEG TICALGDAAAWP+QGLI++FRP +E RI+
Sbjct: 375 IMERMKKGDARLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELEARIN 431


>gi|56753822|gb|AAW25108.1| SJCHGC01665 protein [Schistosoma japonicum]
 gi|226486990|emb|CAX75360.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma
           japonicum]
          Length = 475

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/419 (64%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M RGHW    +I+ KG DWII E+K SGLRGRGGAGF 
Sbjct: 41  LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 100

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA  A+GA+ A
Sbjct: 101 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 160

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   G++ D+ +H GAGAYICGEETAL+E
Sbjct: 161 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 220

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 221 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 280

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG+ GGWDNLLAVIPGGSS P LP      
Sbjct: 281 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 340

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAA+IVM+RS D++  I RL  FY+HESCGQCTPCREG  WM +
Sbjct: 341 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 400

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FRP +E R  ++
Sbjct: 401 IMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKH 459


>gi|90083182|dbj|BAE90673.1| unnamed protein product [Macaca fascicularis]
          Length = 464

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPAQGLIRHFRPELEERMQRF 453


>gi|75676073|ref|YP_318494.1| NADH dehydrogenase I subunit F [Nitrobacter winogradskyi Nb-255]
 gi|74420943|gb|ABA05142.1| NADH dehydrogenase subunit F [Nitrobacter winogradskyi Nb-255]
          Length = 441

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 300/420 (71%), Positives = 344/420 (81%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L+ +  RG WD    I+ KGRDWI++E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTKAIVGKGRDWIVSEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A   +GAH
Sbjct: 61  PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGEFIRERE LQAA+DE Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 AGYIYIRGEFIRERERLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGHV  PC VEE+M ITF ELI+ HCGGIRGGW NL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCVSGHVERPCNVEEAMGITFRELIDTHCGGIRGGWGNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLSKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR  IEERIDQY
Sbjct: 361 RVLTRMAEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEERIDQY 420


>gi|55741424|ref|NP_001006973.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Rattus norvegicus]
 gi|54035438|gb|AAH83709.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Rattus norvegicus]
 gi|149061920|gb|EDM12343.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_a
           [Rattus norvegicus]
          Length = 464

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 271/419 (64%), Positives = 326/419 (77%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQRRGDWYKTKEILLKGPDWILGEMKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+    YD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSDYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVLGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVM+ STDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMNSSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++
Sbjct: 395 VMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRF 453


>gi|319405693|emb|CBI79316.1| NADH dehydrogenase I chain F [Bartonella sp. AR 15-3]
          Length = 435

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 323/425 (76%), Positives = 369/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  ++ RGHWD    I+EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGLKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQAA+DECY +GLLG  +K G+  DIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHVCDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPIVRGEDMIN 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT   IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR  IE+RID Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIEQRIDNYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RSAVQ 425


>gi|163868368|ref|YP_001609577.1| NADH dehydrogenase I subunit F [Bartonella tribocorum CIP 105476]
 gi|161018024|emb|CAK01582.1| NADH dehydrogenase I chain F [Bartonella tribocorum CIP 105476]
          Length = 435

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 320/421 (76%), Positives = 371/421 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           MLTD+DRIFTN+YGL+ KSL  +M RGHW+ + +I++KGRDWII+EVKASGLRGRGGAGF
Sbjct: 1   MLTDKDRIFTNIYGLKDKSLKAAMLRGHWNGLKEIIDKGRDWIIDEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC IA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCAIATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIY+RGE+IRERE+LQ AVDECY +GLLG  +K G+  DII+HHGAGAYICGEETALLE
Sbjct: 121 AFIYIRGEYIREREALQTAVDECYEAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMVD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  VIVMD++TDIIKAIWR+S F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGVIVMDKTTDIIKAIWRISAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFRP IE RID+Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRPEIERRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|329850724|ref|ZP_08265569.1| NADH oxidoreductase quinone, F subunit [Asticcacaulis biprosthecum
           C19]
 gi|328841039|gb|EGF90610.1| NADH oxidoreductase quinone, F subunit [Asticcacaulis biprosthecum
           C19]
          Length = 437

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 301/420 (71%), Positives = 339/420 (80%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYG     L  +  RG W+    IL  G  WII+ VK SGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGFHDWGLEGAKQRGCWNATRDILSYGAPWIIDNVKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK   DRPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASFA+ AH 
Sbjct: 64  STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+I ERE L+AAV + Y + L+G N+  G+D D+ VHHGAGAYICGEETALLE
Sbjct: 124 CYIYLRGEYILERERLEAAVKQAYEAKLIGKNNVHGWDFDVYVHHGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVV TILRRGA+W++ FG  NN GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGSGLYGCPTTVNNVESIAVVGTILRRGAAWFASFGAPNNTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q   
Sbjct: 244 LFCISGHVERPCNVEEAMSIPFRKLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCEN 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L+ + SGLGTAAVIVMD+STD+I+AI RLS FYKHESCGQCTPCREGTGWM R
Sbjct: 304 LAMDFDTLRNLKSGLGTAAVIVMDKSTDLIRAIARLSYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+VKG A+  EID L EV+  +EG TICALGDAAAWPIQGLI++FRP IE RI  Y 
Sbjct: 364 VMERMVKGDAEPSEIDTLLEVTTQVEGHTICALGDAAAWPIQGLIRHFRPEIEARIAAYR 423


>gi|3184148|emb|CAA76757.1| NADH:ubiquinone oxidoreductase 51-kD subunit [Homo sapiens]
          Length = 464

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 273/419 (65%), Positives = 328/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH G + GGWD LLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGFVTGGWDYLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 453


>gi|326429055|gb|EGD74625.1| NADH dehydrogenase flavoprotein 1 [Salpingoeca sp. ATCC 50818]
          Length = 463

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 279/421 (66%), Positives = 328/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NLYG     L  +M RG W     I+ KG D+I+ EVK SGLRGRGGAGF 
Sbjct: 31  LQDSDRIFQNLYGKHDWGLKGAMKRGTWYKTKDIVLKGDDFILEEVKKSGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM     DRP YLVVNADE EPGTCKDR+IMRH+PH LIEGC++A  A+ A  A
Sbjct: 91  SGLKWSFMKGATDDRPKYLVVNADEGEPGTCKDREIMRHDPHMLIEGCLVAGRAMNARAA 150

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF +E  +LQ A++E Y +GL+G N+   GYD D+ +  GAGAYICGEETAL+E
Sbjct: 151 YIYIRGEFFQEASNLQVAINEAYDAGLIGKNACGSGYDFDVYLFRGAGAYICGEETALIE 210

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PRLKPPFPANVGL+GCPTTV NVE++AV PTILRRG  W++GFGR+ N GTK
Sbjct: 211 SLEGKTGKPRLKPPFPANVGLFGCPTTVANVETVAVAPTILRRGGDWFAGFGRKRNEGTK 270

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG+VN PC VEESMSIT  ELI+KHCGG+ GGWDNLL VIPGGSSVP LP      
Sbjct: 271 LFAISGNVNNPCVVEESMSITLRELIDKHCGGVTGGWDNLLGVIPGGSSVPVLPKHICDD 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVMD+S DII  I RLS FY HESCGQCTPCREGT W+ +
Sbjct: 331 VLMDFDALAAEKSGLGTAAVIVMDKSQDIIDCIARLSDFYVHESCGQCTPCREGTTWLAK 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R V+G A K EID+LYE+++ IEG TICALGDAAAWP+QGLI++FRP IE RID Y+
Sbjct: 391 VMHRFVRGDADKEEIDMLYELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIEARIDAYN 450

Query: 421 R 421
           +
Sbjct: 451 K 451


>gi|219112977|ref|XP_002186072.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582922|gb|ACI65542.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 493

 Score =  541 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 269/421 (63%), Positives = 329/421 (78%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
            L+DQDRIFTNLYG Q   L D++ RG +    +I+  G DWII E+K SGLRGRGGAGF
Sbjct: 38  FLSDQDRIFTNLYGEQDWRLPDAIKRGDYHLTKEIMCMGPDWIIQEIKDSGLRGRGGAGF 97

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            +G+KWSFMPK    RP +LVVNADESEPGTCKDR+IMR +PH LIEGC++A +A+ A  
Sbjct: 98  PSGLKWSFMPKETDGRPSFLVVNADESEPGTCKDREIMRKDPHKLIEGCILAGYAMRARA 157

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+  E   L  A+ E YA+GLLG N+   GYD DI +H GAGAYICGEETAL+
Sbjct: 158 AYIYIRGEYFNEAVVLDEAIHEAYAAGLLGKNACGSGYDYDIYLHRGAGAYICGEETALI 217

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G+PRLKPPFPA VGL+GCP+TV NVE++AV PTILRRGASW++ FG ENNRGT
Sbjct: 218 ESLEGKQGKPRLKPPFPAGVGLFGCPSTVTNVETVAVAPTILRRGASWFASFGNENNRGT 277

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHV  P  VEESMSI   +LI+KHCGG+R GW+++ A IPGGSSVP L   Q  
Sbjct: 278 KLFAISGHVKNPMVVEESMSIPLRDLIDKHCGGMRNGWESVQACIPGGSSVPVLNKDQCG 337

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+M++D L+  GSGLGTAAV + D + D++ AI RLS FYKHESCGQCTPCREGTGW+ 
Sbjct: 338 EALMEFDDLRAKGSGLGTAAVTMFDNTVDMVGAIRRLSHFYKHESCGQCTPCREGTGWLE 397

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ R+ KG A KREI +L E+S+ IEG TICALGDAAAWP+QGL+++F+  IE+RID  
Sbjct: 398 DILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQGLLRHFKKDIEDRIDNP 457

Query: 420 H 420
            
Sbjct: 458 K 458


>gi|92117738|ref|YP_577467.1| NADH dehydrogenase I subunit F [Nitrobacter hamburgensis X14]
 gi|91800632|gb|ABE63007.1| NADH dehydrogenase subunit F [Nitrobacter hamburgensis X14]
          Length = 441

 Score =  541 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 301/420 (71%), Positives = 344/420 (81%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L+ +  RG WD    I++KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWRLAGARRRGAWDGTRTIVDKGRDWIISEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PH LIEGC++A   +GAH
Sbjct: 61  PTGMKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHLLIEGCLLAGVGMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGEFIRERE LQAA+DE Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 AGYIYIRGEFIREREHLQAAIDEAYEARLIGKDNIHGFPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAGIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE+M ITF ELI+ HCGGIRGGW+NL AVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFCISGHVERPCNVEEAMGITFRELIDTHCGGIRGGWNNLKAVIPGGSSVRMVPAEQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++ SGLGTAAVIVMD+STD+I+AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DTPMDFDSLGKLRSGLGTAAVIVMDKSTDLIRAIARISYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+  G A KREID+L EV+K +EG TICALGDAAAWPIQGLI +FR  IE RIDQY
Sbjct: 361 RVLTRMADGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIAHFRHEIEARIDQY 420


>gi|307174607|gb|EFN65028.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           [Camponotus floridanus]
          Length = 468

 Score =  541 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 265/421 (62%), Positives = 324/421 (76%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DR+FTNLYG     L  +MSRG W    +IL+KG DWIINE+K SGLRGRGGAGF 
Sbjct: 44  LSDEDRVFTNLYGRHDWRLKGAMSRGDWYKTKEILDKGSDWIINEIKISGLRGRGGAGFP 103

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLV+N DE EPGTCKDR+I+RH+PH L+EGC+IA  A+GA  A
Sbjct: 104 SGMKWSFMNKPADGRPKYLVINGDEGEPGTCKDREILRHDPHKLVEGCLIAGRAMGACAA 163

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q AV E Y +GL+G NS   GYD DI +  GAGAYICGEETAL+E
Sbjct: 164 YIYIRGEFYNEASNMQVAVAEAYQAGLIGKNSCGSGYDFDIFIVRGAGAYICGEETALIE 223

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 224 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNHGTK 283

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELI++H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 284 LFNISGHVNNPCTVEEEMSIPLRELIDRHAGGVIGGWDNLLGVIPGGSSTPVIPKSACDT 343

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            ++D+D L  + S  GTAAVIVM++ TDIIKAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 344 VLLDFDDLIRVQSSFGTAAVIVMNKQTDIIKAITRLISFYKHESCGQCTPCREGISWMFK 403

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R V G A+  EID+L+E++K IE  TICAL D AAWP+QGLI++FRP IE R+ +  
Sbjct: 404 ILKRFVDGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLIRHFRPEIEARLKEQK 463

Query: 421 R 421
           R
Sbjct: 464 R 464


>gi|114764726|ref|ZP_01443911.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Pelagibaca
           bermudensis HTCC2601]
 gi|114542926|gb|EAU45947.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Roseovarius
           sp. HTCC2601]
          Length = 431

 Score =  541 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 291/421 (69%), Positives = 350/421 (83%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L  +  RGHWD    IL KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNLYGMHDRTLQGAKKRGHWDGTAGILGKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGE+IRERE+LQAA+DE Y +G++G N+   G+D D+ +HHGAGAYICGEET+LL
Sbjct: 121 SYIYIRGEYIREREALQAAIDEAYDAGMIGKNACGSGWDFDLYLHHGAGAYICGEETSLL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGASW+SGFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGASWFSGFGRKNNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL  ++GHVN P   EE MS++  E+IEKH GGIRGGWDNL A+IPGG+S P LP  ++ 
Sbjct: 241 KLMGLTGHVNTPSVFEEEMSLSVREIIEKHGGGIRGGWDNLKAIIPGGASCPILPKDKLE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AI D+D ++E  S  GT  +IVMD++TD++KA+WRLS F+KHESCGQCTPCREGTGWMM
Sbjct: 301 DAIFDFDWMRENKSSFGTGCMIVMDQNTDVVKAVWRLSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV+G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI   
Sbjct: 361 RVMDRLVRGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFREEIEDRIKAK 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|168052872|ref|XP_001778863.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669732|gb|EDQ56313.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 463

 Score =  541 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 284/419 (67%), Positives = 336/419 (80%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG+    L+ +  RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 31  LKDEDRIFTNLYGIHDPFLAGAKKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 91  SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAA 150

Query: 122 FIYVRGEFIRERESLQAAVDECYASG-LLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           +IY+RGE++ ER +LQ A+ ECY  G LLG N+   GYD D+ +H+GAGAYICGEETALL
Sbjct: 151 YIYIRGEYVNERLNLQKALHECYKEGSLLGKNACGSGYDFDVYIHYGAGAYICGEETALL 210

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GT
Sbjct: 211 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNSGT 270

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP LP     
Sbjct: 271 KLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKNICD 330

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W+ 
Sbjct: 331 DVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGSPWLW 390

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++FRP +E RI +
Sbjct: 391 TMMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRILE 449


>gi|85708748|ref|ZP_01039814.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. NAP1]
 gi|85690282|gb|EAQ30285.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter sp. NAP1]
          Length = 430

 Score =  541 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 299/422 (70%), Positives = 356/422 (84%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG Q   L  + +RG WDN   ++E+G+D II E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNVYGFQDAGLKAAQARGDWDNTKALIERGQDAIIEEIKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   D    +LV+NADESEPG+CKDR+I+RH+PH L+EG ++A FA+ A 
Sbjct: 61  PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLVEGALVAGFAMRAR 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGE+IRE + LQ A+DE Y +GL+G N+   G+D D+ +H GAGAYICGEETA+
Sbjct: 121 AAYIYIRGEYIREAQVLQKAIDEAYDAGLIGKNASGSGFDFDVFMHRGAGAYICGEETAM 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTILRR A+W+S FGRENN+G
Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRSANWFSSFGRENNKG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHV  PC VEE+MSI F+ELIEKHCGGIRGGWDNLLAVIPGGSSVP +PA Q+
Sbjct: 241 TKLFQISGHVEKPCVVEEAMSIPFEELIEKHCGGIRGGWDNLLAVIPGGSSVPLVPAEQI 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
           R A MD+DGLK++GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 RNAPMDFDGLKDLGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RVMERL  G A   EID+L+EV+K +EG TICALGDAAAWPIQGLI++FRP +E RI++
Sbjct: 361 WRVMERLRTGDAAIEEIDMLHEVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420

Query: 419 YH 420
           ++
Sbjct: 421 HN 422


>gi|259418795|ref|ZP_05742712.1| NADH oxidoreductase (quinone), f subunit [Silicibacter sp.
           TrichCH4B]
 gi|259345017|gb|EEW56871.1| NADH oxidoreductase (quinone), f subunit [Silicibacter sp.
           TrichCH4B]
          Length = 432

 Score =  541 bits (1395), Expect = e-152,   Method: Composition-based stats.
 Identities = 317/422 (75%), Positives = 365/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    ++EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAQKRGHWDGTAGLIEKGRDWIIQTMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDKGLLGKNAAGSGWDFDVFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+   +MR
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVRGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|195146494|ref|XP_002014219.1| GL19080 [Drosophila persimilis]
 gi|194106172|gb|EDW28215.1| GL19080 [Drosophila persimilis]
          Length = 477

 Score =  541 bits (1394), Expect = e-152,   Method: Composition-based stats.
 Identities = 276/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG +WIINE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPNWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMQKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGAAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGTWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ 
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQHA 469

Query: 421 R 421
           +
Sbjct: 470 Q 470


>gi|125986851|ref|XP_001357188.1| GA21571 [Drosophila pseudoobscura pseudoobscura]
 gi|54645518|gb|EAL34256.1| GA21571 [Drosophila pseudoobscura pseudoobscura]
          Length = 477

 Score =  541 bits (1394), Expect = e-152,   Method: Composition-based stats.
 Identities = 276/421 (65%), Positives = 330/421 (78%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG +WIINE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGPNWIINEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMQKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGAAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRG +W++ FGR  N GTK
Sbjct: 230 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPAICRRGGTWFASFGRTRNSGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P      
Sbjct: 290 LFNISGHVNNPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKKVCDD 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM +
Sbjct: 350 VIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNK 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ Q+ 
Sbjct: 410 IMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQQHA 469

Query: 421 R 421
           +
Sbjct: 470 Q 470


>gi|328771741|gb|EGF81780.1| hypothetical protein BATDEDRAFT_31463 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 462

 Score =  541 bits (1394), Expect = e-152,   Method: Composition-based stats.
 Identities = 275/422 (65%), Positives = 332/422 (78%), Gaps = 3/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D DRIFTNLYG     L  +  RG W    +I+ KG DWII+E+K SGLRGRGGAGF 
Sbjct: 39  LSDNDRIFTNLYGRHDFKLEGAKKRGDWYKTKEIILKGHDWIISEMKTSGLRGRGGAGFP 98

Query: 62  TGMKWSFMPKV--CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           +G+KWSFM K      RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++A  A+ A 
Sbjct: 99  SGLKWSFMNKPGGPDGRPRYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLLAGRAMNAT 158

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+RGEF  E  +LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEETAL
Sbjct: 159 ACYIYIRGEFYNEASNLQIAINEAYKAGLIGKNACGSGYDFDIYIHRGGGAYICGEETAL 218

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ES+EGK G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTILRRG SW++GFGRE N G
Sbjct: 219 IESIEGKAGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTILRRGGSWFAGFGRERNSG 278

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLL +IPGGSSVP LP    
Sbjct: 279 TKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLGIIPGGSSVPVLPRKMC 338

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A+MD+D L++M SGLGTAAVIVMD+STDI+ AI RLS FY+HESCGQCTPCREGT W+
Sbjct: 339 EDALMDFDSLRDMQSGLGTAAVIVMDKSTDIVHAISRLSAFYQHESCGQCTPCREGTTWL 398

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +M R  KG A+  EID++ E+S+ IEG TICALGDAAAWP+QGLI++FRP +E++I Q
Sbjct: 399 SNMMRRFEKGNAKVAEIDMIEELSRQIEGHTICALGDAAAWPVQGLIRHFRPEVEKKIMQ 458

Query: 419 YH 420
           + 
Sbjct: 459 FQ 460


>gi|260827659|ref|XP_002608782.1| hypothetical protein BRAFLDRAFT_273832 [Branchiostoma floridae]
 gi|229294134|gb|EEN64792.1| hypothetical protein BRAFLDRAFT_273832 [Branchiostoma floridae]
          Length = 475

 Score =  541 bits (1394), Expect = e-152,   Method: Composition-based stats.
 Identities = 265/421 (62%), Positives = 322/421 (76%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M+RG +    +I+ KG DWI+ E+  SGLRGRGGAGF 
Sbjct: 47  LSDEDRIFTNLYGRHDWKLKGAMARGDYYKTKEIILKGHDWILKEIVKSGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+GA  A
Sbjct: 107 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGVAMGARAA 166

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +L  A+ E Y +GL+G N+   GYD DI VH GAGAYICGEET+L+E
Sbjct: 167 YIYIRGEFYNEGTNLMVAIQEAYKAGLIGKNACGSGYDFDIYVHRGAGAYICGEETSLIE 226

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PRLKPPFPA++G++GCPTTV NVE++AV PTI RRG  W+ G GR  N GTK
Sbjct: 227 SLEGKAGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTICRRGGDWFVGMGRTRNSGTK 286

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG VN PCTVEE MSI   ELIE+H GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 287 LFNISGQVNNPCTVEEEMSIPLKELIERHAGGVIGGWDNLLAVIPGGSSTPLIPRSVCDD 346

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  + LGTAAVIV ++  D++K I RL  FYKHESCGQCTPCREGTGWM +
Sbjct: 347 VMMDFDALVQSQTALGTAAVIVFNKQADVVKGIARLIEFYKHESCGQCTPCREGTGWMTK 406

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V+G A+  EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R++ YH
Sbjct: 407 IMYRFVEGNARPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMEAYH 466

Query: 421 R 421
           +
Sbjct: 467 K 467


>gi|196010577|ref|XP_002115153.1| conserved hypothetical protein [Trichoplax adhaerens]
 gi|190582536|gb|EDV22609.1| conserved hypothetical protein [Trichoplax adhaerens]
          Length = 442

 Score =  541 bits (1394), Expect = e-152,   Method: Composition-based stats.
 Identities = 267/434 (61%), Positives = 331/434 (76%), Gaps = 12/434 (2%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + D+DRIFTNLYG     L  ++SRG W    +IL KG +WI+NEVK SGLRGRGGAGF 
Sbjct: 1   IKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGHEWILNEVKKSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  ++GA  A
Sbjct: 61  SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRSMGARAA 120

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A++E Y +GL+G N+   GYD DI +H GAGAYICGEETAL+E
Sbjct: 121 YIYIRGEFYNEASNMQIAINEAYKAGLIGKNACSSGYDFDIFMHRGAGAYICGEETALIE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV P I RRG  W++ FGRE N GTK
Sbjct: 181 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPAICRRGGDWFASFGRERNSGTK 240

Query: 241 -----------LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
                      LF ISGHVN PCTVEE MS+   ELIEKH GG+ GGWDNLL +IPGGSS
Sbjct: 241 ASLIIIFGYFDLFCISGHVNAPCTVEEEMSVPLKELIEKHAGGVIGGWDNLLGIIPGGSS 300

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
           VP +P       +MD+D L+++ SGLGTAAVIVM++ +D+IK I RL  FYKHESCGQCT
Sbjct: 301 VPVIPRRICDDVLMDFDALQQVQSGLGTAAVIVMNKQSDMIKCISRLMDFYKHESCGQCT 360

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           PCREGTGW+ ++M R V+G A   EID++ E+S+ IEG TICALGDAAAWP+QGL+++FR
Sbjct: 361 PCREGTGWLAKIMARFVEGNADPEEIDMIEELSRQIEGHTICALGDAAAWPVQGLVRHFR 420

Query: 410 PLIEERIDQYHRCN 423
             + ERI+QY   N
Sbjct: 421 HEMLERIEQYKAKN 434


>gi|40538780|ref|NP_777233.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Bos taurus]
 gi|162864|gb|AAA30450.1| mitochondrial NADH dehydrogenase (ubiquinone) 51kDa subunit [Bos
           taurus]
          Length = 464

 Score =  541 bits (1393), Expect = e-152,   Method: Composition-based stats.
 Identities = 274/416 (65%), Positives = 324/416 (77%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           VM R V+G A+  EID L E+SK IEG TICALGD AAWP+QGLI++FRP +EER+
Sbjct: 395 VMARFVRGDARPAEIDSLCEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 450


>gi|254512379|ref|ZP_05124446.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae
           bacterium KLH11]
 gi|221536090|gb|EEE39078.1| NADH oxidoreductase (quinone), F subunit [Rhodobacteraceae
           bacterium KLH11]
          Length = 433

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 315/422 (74%), Positives = 364/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YG+  ++L  + +RGHWD    ++ KGRDWII  +K SGLRGRGGAGF
Sbjct: 2   MLKDQDRIFTNIYGMHERTLKGAQARGHWDGTAGLINKGRDWIIQTMKDSGLRGRGGAGF 61

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PHTLIEGC+IASFA+ AH 
Sbjct: 62  PTGLKWSFMPKESDGRPSYLVVNADESEPGTCKDREIMRHDPHTLIEGCLIASFAMNAHT 121

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y +GLLG N +  G+D D+ +HHGAGAYICGEETAL+
Sbjct: 122 CYIYLRGEYIREREALQAAIDEAYDAGLLGKNAAGSGWDFDLFLHHGAGAYICGEETALI 181

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR+NN GT
Sbjct: 182 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGADWFAGFGRQNNAGT 241

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F++LIE HCGGIRGGWDNLLAVIPGGSSVPC+    MR
Sbjct: 242 KLFAISGHVNNPCVVEEAMSISFEDLIETHCGGIRGGWDNLLAVIPGGSSVPCVRGENMR 301

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD+STDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 302 DAIMDFDYLRGELGSGLGTAAVIVMDKSTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 361

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 362 MRVMDRLVRGEAELEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 421

Query: 419 YH 420
             
Sbjct: 422 QK 423


>gi|121601753|ref|YP_989075.1| NADH dehydrogenase I subunit F [Bartonella bacilliformis KC583]
 gi|120613930|gb|ABM44531.1| NADH dehydrogenase (quinone), F subunit [Bartonella bacilliformis
           KC583]
          Length = 435

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 321/421 (76%), Positives = 366/421 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + +SL  ++SRGHWDN   I+EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDRSLKGAISRGHWDNTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQAA+DECY +G LG  +K G+  DIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQAAIDECYDAGFLGKKTKHGHACDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVG+YGCPTTVNNVESIAV PTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGIYGCPTTVNNVESIAVAPTILRRGASWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCT EES+ I+F ELIEKH GGIRGGW+NLLAVIPGG+S P +    +  
Sbjct: 241 LFMISGHVNAPCTFEESLGISFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDIMD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT   IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFR  IE RID Y 
Sbjct: 361 LLGRMVEGKAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRSEIERRIDDYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|254420908|ref|ZP_05034632.1| NADH oxidoreductase (quinone), F subunit [Brevundimonas sp. BAL3]
 gi|196187085|gb|EDX82061.1| NADH oxidoreductase (quinone), F subunit [Brevundimonas sp. BAL3]
          Length = 437

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 297/426 (69%), Positives = 348/426 (81%), Gaps = 2/426 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYG Q  +L  + +RG W+    +L+ GRDWIIN VKASGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGFQDWTLDGAKTRGAWNATKDMLDLGRDWIINNVKASGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK   DRPHYLVVNADESEPGTCKDR+IMRH+P  LIEGC+IASFA+ AH 
Sbjct: 64  STGLKWSFMPKEVKDRPHYLVVNADESEPGTCKDREIMRHDPQLLIEGCLIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ ERE ++AAV + Y + L+G ++  G+D D+ +HHGAGAYICGEETALLE
Sbjct: 124 CYIYLRGEYVLERERMEAAVKQAYEARLIGKDNVHGWDFDVYIHHGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGAGWFAGFGRPNNTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L +ISGHVN PC VEE+MSI   +L+E+HCGG+RGGWDNL A+IPGGSSVP +       
Sbjct: 244 LMAISGHVNAPCVVEEAMSIPLRQLLEEHCGGVRGGWDNLKAIIPGGSSVPLITREMSET 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D L+EM SGLGTAAVIVMD STD++KAI R+S FYKHESCGQCTPCREGTGWM R
Sbjct: 304 ALMDFDSLREMRSGLGTAAVIVMDNSTDLVKAIARISYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419
           V+ER+  G A   EIDLL +V+  +EG TICALGDAAAWP+QGLI++FR  IEERI  Y 
Sbjct: 364 VLERMSVGEADPSEIDLLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRHEIEERIANYR 423

Query: 420 -HRCNF 424
             R NF
Sbjct: 424 SRRANF 429


>gi|163741486|ref|ZP_02148877.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161385220|gb|EDQ09598.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis
           2.10]
          Length = 432

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 316/422 (74%), Positives = 364/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    I+EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGIIEKGRDWIIQNMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDQGLLGRNAAGSGWDFDVFLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPDWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+   +M+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAA+IVMD+ TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAIIVMDKQTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLVKG A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|260428309|ref|ZP_05782288.1| NADH oxidoreductase (quinone), f subunit [Citreicella sp. SE45]
 gi|260422801|gb|EEX16052.1| NADH oxidoreductase (quinone), f subunit [Citreicella sp. SE45]
          Length = 431

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 291/418 (69%), Positives = 347/418 (83%), Gaps = 1/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG+  ++L  +  RGHWD    I+ KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLKDEDRIFTNLYGMHDRTLEGAKKRGHWDGTADIIGKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+IRE+E+LQAA+DE Y  G++G N+   G+D D+ +HHGAGAYICGEETAL+
Sbjct: 121 AYIYIRGEYIREKEALQAAIDEAYDKGMIGRNACGTGWDFDLYLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGASW+SGFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGASWFSGFGRKNNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +++GHVN PC  EE MS++  E+IEKH GGIRGGWDNL A+IPGG+S P LP   + 
Sbjct: 241 KLMALTGHVNTPCVFEEEMSLSVREIIEKHGGGIRGGWDNLKAIIPGGASCPVLPKHALE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AI D+D ++E  S  GT  +IVMD S D++KA+WRLS F+KHESCGQCTPCREGTGWMM
Sbjct: 301 DAIFDFDWMRENRSSFGTGCMIVMDNSVDVVKAVWRLSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVM+RLV G A+  EID+L +V+K +EG TICALGDAAAWPIQGLI++FR  IE+RI 
Sbjct: 361 RVMDRLVTGEAEVEEIDMLLDVTKQVEGHTICALGDAAAWPIQGLIRHFRDEIEDRIK 418


>gi|328871524|gb|EGG19894.1| ubiquinone oxidoreductase [Dictyostelium fasciculatum]
          Length = 473

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 276/420 (65%), Positives = 329/420 (78%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +++RG W     ++ KG+DWII E+ ASGLRGRGGAGF 
Sbjct: 46  LKDKDRIFTNLYGEHDVYLKGAIARGDWYRTKDLIGKGKDWIIKEMMASGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK  + RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A FA+ A  A
Sbjct: 106 SGLKWSFMPKQSTGRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLVAGFAMRACAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E + ++ A+ E Y +G LG N+   GY  D  VH GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFHLEAKVMEQAIAEAYKAGYLGENACGTGYKFDCYVHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA  GLYGCPTTV NVE++AV PTILRRG +W++GFGR  N GTK
Sbjct: 226 SLEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFAGFGRPKNSGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELI+KHCGG+ GGWDNLL +IPGGSSVP LP      
Sbjct: 286 LFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVIGGWDNLLGIIPGGSSVPVLPKDICNE 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+ + SGLGTAAV VMD+STDI+ AI RLS FYKHESCGQCTPCREGTGWM  
Sbjct: 346 VLMDFDDLRRVRSGLGTAAVTVMDKSTDIVGAIARLSKFYKHESCGQCTPCREGTGWMWD 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMERLV G A+  EID+L E+++ +EG TICALGDAAAWPIQGL+++FRP +E RI  + 
Sbjct: 406 VMERLVTGDAKLDEIDMLEEITRQVEGHTICALGDAAAWPIQGLLRHFRPEVEARIHSFQ 465


>gi|209964545|ref|YP_002297460.1| NADH dehydrogenase I subunit F [Rhodospirillum centenum SW]
 gi|209958011|gb|ACI98647.1| NADH-quinone oxidoreductase chain F [Rhodospirillum centenum SW]
          Length = 433

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 297/421 (70%), Positives = 334/421 (79%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG +   L  +  RG WDN   IL  GRD II  VK SGLRGRGGAGF
Sbjct: 1   MLRDEDRIFTNLYGFEDFRLEAARRRGDWDNTQDILALGRDRIIELVKESGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK     P YLVVNADE EPGTCKDRDI+RH+PH L+EGC+IA FAIGA  
Sbjct: 61  STGMKWSFMPKKSDGGPVYLVVNADEGEPGTCKDRDILRHDPHKLVEGCLIAGFAIGATA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E   +Q A+DE YA+GL+G N+   GYD DI +H GAGAYICGEETAL+
Sbjct: 121 CYIYIRGEFYDEGSHVQQAIDEAYAAGLIGRNACGSGYDFDIYLHRGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR KPPFPA  GLY  PTTVNNVE+IAVVPTILRRGA+W++G GR  N GT
Sbjct: 181 ESLEGKKGQPRNKPPFPAMAGLYARPTTVNNVETIAVVPTILRRGATWFAGLGRPKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE M I   EL+EKH GG+RGGWDNLLA+IPGGSSVP LP     
Sbjct: 241 KVFCISGHVNRPCNVEEEMGIPLRELVEKHAGGVRGGWDNLLAIIPGGSSVPMLPRETCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E+ SGLGTAAVIVMDRSTD++KAI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 301 TVLMDFDSLREVRSGLGTAAVIVMDRSTDVVKAIARLSKFYMHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+VKG A+  EID+L +VSK IEG TICALGDAAAWPIQGLI+NFRP +E RI +Y
Sbjct: 361 RVMERMVKGQARIEEIDMLLDVSKEIEGHTICALGDAAAWPIQGLIRNFRPEMERRILEY 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|49475653|ref|YP_033694.1| NADH dehydrogenase I subunit F [Bartonella henselae str. Houston-1]
 gi|49238460|emb|CAF27688.1| NADH dehydrogenase I, F subunit [Bartonella henselae str.
           Houston-1]
          Length = 435

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 321/421 (76%), Positives = 370/421 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYGL+ KSL  ++SRGHWD    I++KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNLYGLKDKSLKAAISRGHWDGTRAIIDKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCV+A+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVLATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIY+RGE+IRERE+LQAAVDECY +GLLG  +K G+  DII+HHGAGAYICGEETALLE
Sbjct: 121 AFIYIRGEYIREREALQAAVDECYDAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPVVRGEDMVD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFRP IE RID Y 
Sbjct: 361 LLGRMVEGKAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRPEIERRIDDYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|86749697|ref|YP_486193.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris HaA2]
 gi|86572725|gb|ABD07282.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 441

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 300/422 (71%), Positives = 345/422 (81%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L  +  RG W+    I++KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWGLKGARRRGQWEGTKAIIDKGRDWIISEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PHTL+EGC+IA  A+GAH
Sbjct: 61  PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLIAGCAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  GY  D+ V HGAGAYICGEETALL
Sbjct: 121 VGYIYVRGEFIREREHLQAAIDQAYEAKLIGKDNVHGYPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGASW++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGASWFAGIGRANNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA    
Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S  GTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV++R+V G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLDRMVHGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|49474182|ref|YP_032224.1| NADH dehydrogenase I subunit F [Bartonella quintana str. Toulouse]
 gi|49239686|emb|CAF26061.1| NADH dehydrogenase I, F subunit [Bartonella quintana str. Toulouse]
          Length = 435

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 323/425 (76%), Positives = 370/425 (87%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD +  I++KGRDWII+EVKASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGLKDKSLKAAMSRGHWDGIKAIIDKGRDWIIDEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC +A+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCALATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQAAVDECY +GLLG  +K G+  DII+HHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQAAVDECYDAGLLGKKTKYGHVCDIIIHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVG+YGCPTTVNNVESIAV+PTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGIYGCPTTVNNVESIAVIPTILRRGASWFSSIGRANNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT EE++ ++F ELIEKH GGIRGGW NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWSNLLAVIPGGASCPVVRGEDMVD 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  VIVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGVIVMDKSTDIIKAIWRITAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVS+ +EG TICALGDAAAWPIQGLI+NFRP IE RID Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSEQVEGHTICALGDAAAWPIQGLIRNFRPEIERRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RSVIQ 425


>gi|319898887|ref|YP_004158980.1| NADH dehydrogenase I chain F [Bartonella clarridgeiae 73]
 gi|319402851|emb|CBI76402.1| NADH dehydrogenase I chain F [Bartonella clarridgeiae 73]
          Length = 435

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 324/425 (76%), Positives = 368/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + KSL  +M RGHWDN   I+EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDKSLKGAMLRGHWDNTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQ A+DECY +GLLG  +K G+  DIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQVAIDECYEAGLLGKKTKYGHVCDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCT EE++ ++F ELIEKH GGIRGGWDNLLAVIPGG+S P +    M  
Sbjct: 241 LFMISGHVNAPCTFEEALGVSFRELIEKHTGGIRGGWDNLLAVIPGGASCPIVRGEDMID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT   IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDIGSSFGTGGAIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR  IE+RID Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIEQRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RSAIQ 425


>gi|163738803|ref|ZP_02146217.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis
           BS107]
 gi|161388131|gb|EDQ12486.1| NADH-quinone oxidoreductase, F subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 432

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 317/422 (75%), Positives = 366/422 (86%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  ++L+ +  RGHWD    I+EKGRDWII  +K SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMHERTLAGAKQRGHWDGTAGIIEKGRDWIIQNMKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPGTCKDR+IMRH+PHTLIEG +IASFA+ AH 
Sbjct: 61  PTGLKWSFMPKESDGRPSYLVINADESEPGTCKDREIMRHDPHTLIEGALIASFAMNAHT 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DECY  GLLG N+   G+D D+++HHGAGAYICGEETAL+
Sbjct: 121 CYIYLRGEYIREREALQAAIDECYDQGLLGRNAAGSGWDFDVLLHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG  W++GFGR+NN GT
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPDWFAGFGRQNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIEKHCGGIRGGWDNLLAVIPGGSSVPC+   +M+
Sbjct: 241 KLFAISGHVNNPCVVEEAMSISFEELIEKHCGGIRGGWDNLLAVIPGGSSVPCVRGEKMK 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ E+GSGLGTAAVIVMD++TDIIKAIWRLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRGELGSGLGTAAVIVMDKNTDIIKAIWRLSKFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           MRVM+RLVKG A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI  
Sbjct: 361 MRVMDRLVKGEAELEEIDMLWDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKA 420

Query: 419 YH 420
             
Sbjct: 421 QK 422


>gi|73982787|ref|XP_533212.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 1 [Canis familiaris]
          Length = 464

 Score =  539 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 269/421 (63%), Positives = 324/421 (76%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRL P   ++ G++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLNPSSHSSTGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 335 VLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ 
Sbjct: 395 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 454

Query: 421 R 421
           +
Sbjct: 455 Q 455


>gi|154298519|ref|XP_001549682.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Botryotinia
           fuckeliana B05.10]
 gi|150858040|gb|EDN33232.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Botryotinia
           fuckeliana B05.10]
          Length = 509

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 270/426 (63%), Positives = 320/426 (75%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L+ +   G W     IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 60  LRDQDRIFQNLYGHHGADLASAKKYGDWHRTKDILAKGHDWIISEIKASGLRGRGGAGFP 119

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +GMKWSFM     +    P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+  
Sbjct: 120 SGMKWSFMNFKGWENDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNC 179

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y  GL+G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 180 TAAYIYIRGEFYHEATVLQRAIQEAYKDGLIGKNACGSGYDFDVYVHRGMGAYVCGEETS 239

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG  W++ FGRE N 
Sbjct: 240 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGDWFASFGRERNA 299

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNL AVIPGGSS P LP   
Sbjct: 300 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKDV 359

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 360 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 419

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 420 TEQIMKRFEKGQGRVREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMK 479

Query: 418 QYHRCN 423
            Y   N
Sbjct: 480 DYAEKN 485


>gi|91977350|ref|YP_570009.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisB5]
 gi|91683806|gb|ABE40108.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 441

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 299/422 (70%), Positives = 346/422 (81%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L  +  RG W+    I++KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGLDDWGLKGARRRGQWEGTKAIIDKGRDWIISEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++A  A+GAH
Sbjct: 61  PTGLKWSFMPKDNADGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLVAGCAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAA+D+ Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 VGYIYVRGEFIREREHLQAAIDQAYEAKLIGKDNVHGFPFDLYVAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGASW++G GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGASWFAGIGRANNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA   +
Sbjct: 241 KLYGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCQ 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S  GTA VIVMD+STDI+ AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDIVAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV++R+V G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLDRMVHGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|91205998|ref|YP_538353.1| NADH dehydrogenase I subunit F [Rickettsia bellii RML369-C]
 gi|157826638|ref|YP_001495702.1| NADH dehydrogenase I subunit F [Rickettsia bellii OSU 85-389]
 gi|122425283|sp|Q1RHA0|NUOF_RICBR RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|166918573|sp|A8GYE0|NUOF_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|91069542|gb|ABE05264.1| NADH dehydrogenase I chain F [Rickettsia bellii RML369-C]
 gi|157801942|gb|ABV78665.1| NADH dehydrogenase I chain F [Rickettsia bellii OSU 85-389]
          Length = 417

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 295/418 (70%), Positives = 331/418 (79%), Gaps = 2/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +DRIFTNL+G Q   L  S   G WDN   +L KG++WII EVK SGLRGRGGAGF
Sbjct: 1   MLKKEDRIFTNLHGEQSHDLKSSKKLGDWDNTKALLNKGKEWIIEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG KWSFMPK  S +P YLVVNADESEPGTCKDRDI+R+EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGTKWSFMPK-ESKKPSYLVVNADESEPGTCKDRDILRYEPHKLIEGCLLASFAIGANS 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G++ DI +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFNCDIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I   E+IEKH GG+RGGWDNL A+IPGGSSVP LP     
Sbjct: 240 KIFCISGHVNKPCNVEEAMGIPLKEIIEKHAGGVRGGWDNLKAIIPGGSSVPLLPKSLCE 299

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+D LK  GS LGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 300 TADMDFDSLKAAGSSLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVM RLVKG A+K EID L EV+K IEG TICALGDAAAWPIQGLIK+FR  IE RI 
Sbjct: 360 RVMMRLVKGDAKKSEIDQLLEVTKEIEGHTICALGDAAAWPIQGLIKHFRNEIESRIQ 417


>gi|224009243|ref|XP_002293580.1| hypothetical protein THAPSDRAFT_29850 [Thalassiosira pseudonana
           CCMP1335]
 gi|220970980|gb|EED89316.1| hypothetical protein THAPSDRAFT_29850 [Thalassiosira pseudonana
           CCMP1335]
          Length = 499

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 269/418 (64%), Positives = 327/418 (78%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+DQDRIFTNLYG Q   L D++ RG +    +++  G DWI+ E+K SGLRGRGGAGF 
Sbjct: 44  LSDQDRIFTNLYGEQDWRLKDALKRGDYHLTKEMMWMGPDWIVQEIKDSGLRGRGGAGFP 103

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP +LVVNADESEPGTCKDR+IMR +PH LIEGC+IA +A+ A  A
Sbjct: 104 SGLKWSFMPKESDGRPSFLVVNADESEPGTCKDREIMRKDPHKLIEGCLIAGYAMRARAA 163

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+  E   L  A+ E YA+GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 164 YIYIRGEYFNEAVVLDEAIHEAYAAGLIGKNACGSGYDFDVYLHRGAGAYICGEETALIE 223

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++G+PRLKPPFPA VGL+GCP+TV NVE++AV PTILRRGASW++GFG  NNRGTK
Sbjct: 224 SLEGRQGKPRLKPPFPAGVGLFGCPSTVTNVETVAVSPTILRRGASWFAGFGNPNNRGTK 283

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV  P  VEESMSI   ELIEKHCGG+R GWD L A IPGGSSVP L   Q   
Sbjct: 284 LFAISGHVKNPIVVEESMSIPLQELIEKHCGGMRNGWDTLQACIPGGSSVPVLNKAQCDE 343

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+M++D L+  GSGLGTAAV + D S D++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 344 ALMEFDDLRAKGSGLGTAAVTMFDNSVDMVGAIRRLSHFYKHESCGQCTPCREGTSWLED 403

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++ R+ KG A KREI +L E+S+ IEG TICALGDAAAWP+QGL+++F+  IE+RID 
Sbjct: 404 ILIRMEKGDADKREIPMLEEISRQIEGHTICALGDAAAWPVQGLLRHFKKDIEDRIDD 461


>gi|89896716|ref|YP_520203.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
 gi|89336164|dbj|BAE85759.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
          Length = 597

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 165/424 (38%), Positives = 252/424 (59%), Gaps = 6/424 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q RI   N   +    L D ++   ++ + K L    + I+ EVK SGLRGRGGAG
Sbjct: 112 FFAKQTRIALKNCGFIDPTKLDDYLAHKGYEGLKKALTMAPEAIVEEVKESGLRGRGGAG 171

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           FSTG+KWS      SD   Y++ NADE +PG   DR ++  +PH +IEG +I ++AIGA 
Sbjct: 172 FSTGLKWSLCRATPSD-KKYVICNADEGDPGAFMDRGLLEGDPHAIIEGMLIGAYAIGAD 230

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y R E+    ++LQ A+ +   +G LG+N    G++  + ++ GAGA++CGEETAL
Sbjct: 231 EGYVYCRAEYPLAIKNLQIAIKQAEEAGFLGNNILGSGFNFHLKINAGAGAFVCGEETAL 290

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR++PPFPA  GL+G PT +NNVE+ + +P ILR GA WY+ +G E ++G
Sbjct: 291 MASIEGKRGMPRVRPPFPAQSGLWGKPTNINNVETWSNIPHILRNGAQWYAQYGTEKSKG 350

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G VN    VE  M +   ++I    GGI+       AV  GG S  CLP   M
Sbjct: 351 TKIFALTGKVNNTGLVEVPMGMPLRDIIFDIGGGIK-DGKKFKAVQIGGPSGGCLPED-M 408

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L + G+ +G+  +++MD +T ++        F + ESCG+CTPCREG   M
Sbjct: 409 LDLPVDYDTLTKAGAMVGSGGLVIMDETTCMVDIARFFLNFSQSESCGKCTPCREGNKRM 468

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +++R+ +G  ++ +I+ L  ++  ++  ++C LG  A  PI   +K FR   EE I  
Sbjct: 469 WEILDRITRGEGREDDIEKLETLAYTVKETSLCGLGQNAPNPILATLKYFREEFEEHI-H 527

Query: 419 YHRC 422
             +C
Sbjct: 528 AKKC 531


>gi|326387456|ref|ZP_08209065.1| NADH dehydrogenase I subunit F [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208112|gb|EGD58920.1| NADH dehydrogenase I subunit F [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 430

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 299/419 (71%), Positives = 350/419 (83%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG Q  +L+ + +RG WDN   +LE+GRD II E+K SGLRGRGGAGF 
Sbjct: 3   LADKDRIFTNLYGFQPWNLAAARARGDWDNTKALLERGRDAIIQEMKDSGLRGRGGAGFP 62

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D    +LV+NADESEPG+CKDR+I+RH+PH L+EG ++A FA+GA  
Sbjct: 63  TGMKWSFMPKESRDGRPSFLVINADESEPGSCKDREIIRHDPHKLVEGALVAGFAMGARA 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+IRE E+L AAV E Y +GL+G N+   GYD D+ VH GAGAYICGEETA++
Sbjct: 123 AYIYIRGEYIREAETLFAAVREAYDAGLIGRNASGSGYDFDVFVHRGAGAYICGEETAMI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRGA+W+S FGR+NN+GT
Sbjct: 183 ESIEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAAWFSSFGRDNNKGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV+ PC VEE MSI F ELIE+HCGGIRGGWDNLLAVIPGGSSVP +P+ Q+ 
Sbjct: 243 KLFQISGHVDKPCVVEEEMSIPFRELIERHCGGIRGGWDNLLAVIPGGSSVPLVPSEQIM 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 303 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVMERL  G A   EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP IE RI +
Sbjct: 363 RVMERLRTGDASVEEIDMLFNVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAE 421


>gi|307293265|ref|ZP_07573111.1| NADH-quinone oxidoreductase, F subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306881331|gb|EFN12547.1| NADH-quinone oxidoreductase, F subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 438

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 297/421 (70%), Positives = 344/421 (81%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG Q   +  +M RG WDN  K++E G+D II  +KASGLRGRGGAGF 
Sbjct: 8   LADKDRIFTNVYGFQDWGIDAAMKRGDWDNTRKLMEIGQDEIIERIKASGLRGRGGAGFP 67

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D    +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA FA+ A  
Sbjct: 68  TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIVRHDPHKLIEGALIAGFAMRARA 127

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFI E + L AAV++ Y  G LG N+   GYD D+ VH GAGAYICGEETA +
Sbjct: 128 AYIYIRGEFIYEAKVLFAAVEQAYEKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 187

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRG+ W+S FGRENN+GT
Sbjct: 188 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVGPTILRRGSEWFSSFGRENNKGT 247

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEESM I+F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ 
Sbjct: 248 KLFQISGHVNKPCVVEESMGISFKELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAKEIM 307

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGL+ +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 308 DAPMDFDGLRALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 367

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMERL  G A   EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP IE RI++ 
Sbjct: 368 RVMERLRSGDADISEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRINEN 427

Query: 420 H 420
            
Sbjct: 428 K 428


>gi|103486791|ref|YP_616352.1| NADH dehydrogenase I subunit F [Sphingopyxis alaskensis RB2256]
 gi|98976868|gb|ABF53019.1| NADH-quinone oxidoreductase, F subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 430

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 298/419 (71%), Positives = 350/419 (83%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG Q  +L  + +RG WDN   ++++G+D II E+KASGLRGRGGAGF 
Sbjct: 3   LADKDRIFTNLYGFQPWNLKAAQARGDWDNTRDLMKRGQDAIIEEIKASGLRGRGGAGFP 62

Query: 62  TGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG+KWSFMPK   +DRP +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA +A+ A  
Sbjct: 63  TGLKWSFMPKEPRADRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGYAMRARA 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFIRE E+L AAV E Y +GLLG N+ K GYD D+ VH GAGAYICGEETA++
Sbjct: 123 AYIYIRGEFIREAETLFAAVQEAYDAGLLGKNAAKSGYDFDVFVHRGAGAYICGEETAMI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++ FGRENN+GT
Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAPWFASFGRENNKGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE MSI F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ 
Sbjct: 243 KLFQISGHVNKPCVVEEEMSIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAAEIM 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+DGLK +GSGLGTAA IVMD+STD+++AI R+S FYKHESCG CTPCREGTGWM 
Sbjct: 303 DCPMDFDGLKAVGSGLGTAAAIVMDKSTDVVQAISRISYFYKHESCGHCTPCREGTGWMW 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVMERL  G A   EID L++V+K +EG TICALGDAAAWPIQGLI++FRP +E RI +
Sbjct: 363 RVMERLRTGDADISEIDTLFDVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIRE 421


>gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 607

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 162/425 (38%), Positives = 251/425 (59%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q RI T NL  +    + + ++R  +  + K L+   + +I E+K SGLRGRGGAG
Sbjct: 111 FFKKQVRIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAG 170

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW    +  ++   ++V NADE +PG   DR ++  +PH +IEG  IA++AIGA 
Sbjct: 171 FPTGLKWELAARQKAE-KKFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQ 229

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             F+YVR E+    E L  A+++    G LG N     +  DI +  GAGA++CGEETAL
Sbjct: 230 KGFVYVRAEYPLAIERLNIALNQAREYGFLGGNIMGTDFSFDIEIRIGAGAFVCGEETAL 289

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG++GQP++KPP+P   GL+G PT +NNVE++A VP I+R GA  +  +G EN+ G
Sbjct: 290 MASIEGERGQPKVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTENSPG 349

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G V     VE  M IT  ELI +  GGI G    L A+  GG S  C+PA  +
Sbjct: 350 TKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIAGD-KKLKAIQTGGPSGGCIPAEYV 408

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D++ L+++G+ +G+  +IVMD    ++        F   ESCG+CTPCREGT  M
Sbjct: 409 -DTPVDFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKM 467

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++E++  G   + +I+ L +++  ++  ++C LG  A  P+   ++ FR      + +
Sbjct: 468 LEILEKITSGEGTEEDIEELEKLAHVVKDTSLCGLGQTAPNPVLSTLRYFRDEYLAHVKE 527

Query: 419 YHRCN 423
             RC 
Sbjct: 528 -KRCP 531


>gi|332185757|ref|ZP_08387504.1| NADH oxidoreductase (quinone), F subunit [Sphingomonas sp. S17]
 gi|332014115|gb|EGI56173.1| NADH oxidoreductase (quinone), F subunit [Sphingomonas sp. S17]
          Length = 436

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 303/422 (71%), Positives = 350/422 (82%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG Q  ++  +M RG WDN   +LE G+D II+ +KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNLYGYQPWNVDAAMKRGDWDNTKALLELGQDKIIDVIKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK    DRP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A 
Sbjct: 61  PTGMKWSFMPKEPRPDRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGE+IRE E+L AAV E Y  G LG N+   GYD D+ VH GAGAYICGEETA+
Sbjct: 121 AAYIYIRGEYIREAETLFAAVAEAYDRGFLGKNACGSGYDFDVFVHRGAGAYICGEETAM 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRGA W+S FGRENN+G
Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAEWFSSFGRENNKG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHV+ PC VEESMSI+F ELIE+HCGGIRGGWDNLLAVIPGGSSVP +PA ++
Sbjct: 241 TKLFQISGHVDRPCVVEESMSISFRELIERHCGGIRGGWDNLLAVIPGGSSVPLVPAAEI 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 MDAPMDFDGLKAVGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RVMER+  G A   EID L++V+K +EG TICALGDAAAWPIQGLI++FRP +E RI +
Sbjct: 361 WRVMERMRTGDADVSEIDTLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMERRIRE 420

Query: 419 YH 420
             
Sbjct: 421 RK 422


>gi|118367869|ref|XP_001017144.1| NADH-quinone oxidoreductase, F subunit family protein [Tetrahymena
           thermophila]
 gi|89298911|gb|EAR96899.1| NADH-quinone oxidoreductase, F subunit family protein [Tetrahymena
           thermophila SB210]
          Length = 474

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 278/421 (66%), Positives = 331/421 (78%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY      +  ++ RG W    +IL  G +WII+E+K SGLRGRGGAGF 
Sbjct: 35  LKDQDRIFTNLYRDGDPFVKGALKRGDWHQTKEILSNGPEWIIDEIKKSGLRGRGGAGFL 94

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+K+SFMPKV  D    YLV+N+DESEPGTCKDR+I+R++PH L+EG ++  F++ A  
Sbjct: 95  SGLKYSFMPKVNPDGRPSYLVINSDESEPGTCKDREILRNDPHKLVEGALVVGFSMRARA 154

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   LQ A+DE YA G +G N+   GYD D+ +H GAGAYICGEET L+
Sbjct: 155 AYIYIRGEFWVEANILQQAIDEAYAKGFIGKNACGSGYDFDVYIHRGAGAYICGEETGLI 214

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK GQPR+KPPFPAN GLYGCPTTV NVE++AV PTI+RRGASW++ FGR NN GT
Sbjct: 215 ESIEGKAGQPRVKPPFPANAGLYGCPTTVTNVETVAVCPTIMRRGASWFASFGRPNNAGT 274

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PCTVEE MSI   EL+EKHCGG+RGGWDNLLAVIPGGSSVP +P     
Sbjct: 275 KLYCISGHVNNPCTVEEEMSIPLRELLEKHCGGVRGGWDNLLAVIPGGSSVPMMPKNVCD 334

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK +GSGLGTAAVIVMD+STD I AI RLS FYKHESCGQCTPCREGTGW++
Sbjct: 335 DVLMDFDALKAVGSGLGTAAVIVMDKSTDPIDAILRLSKFYKHESCGQCTPCREGTGWIV 394

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            VMERL+ G A   EID+L +V++ IE  TICALGDAAAWP+QGLIKNFR  IE+RID Y
Sbjct: 395 DVMERLLVGNADYAEIDMLQQVTQQIEMHTICALGDAAAWPVQGLIKNFREEIEDRIDSY 454

Query: 420 H 420
           H
Sbjct: 455 H 455


>gi|294083716|ref|YP_003550473.1| NADH-quinone oxidoreductase subunit F [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663288|gb|ADE38389.1| NADH-quinone oxidoreductase, F subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 430

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 301/421 (71%), Positives = 340/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTN+YG     L+ +  RG WDN   IL+ G   I+  +KASGLRGRGGAGF
Sbjct: 1   MLKDADRIFTNIYGWNDAMLAGAKKRGDWDNTAAILKLGHGEIVERMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+   DRPHYLVVNADESEPGTCKDRDI+RHEPH L+EGCV+A FA+ AH 
Sbjct: 61  PTGLKWSFMPQEVRDRPHYLVVNADESEPGTCKDRDIIRHEPHKLLEGCVVAGFAMRAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF+ E   LQAA+DE Y +GLLG N+ K G+D DI +H GAGAYICGEETALL
Sbjct: 121 AYIYIRGEFVNEARRLQAAIDEAYDAGLLGKNAAKSGWDFDIYLHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG+ W++G G+ENN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGSDWFAGLGKENNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE M I   EL+EKH GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 241 KLFCISGHVNKPCNVEEEMGIPLKELLEKHAGGVRGGWDNLLAVIPGGSSTPMMPKDTCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+E G+GLGTA VIVMD+STD++KAI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 301 TMTMDFDALREAGTGLGTAGVIVMDKSTDVVKAISRLSYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+MERLV+G A+  EID LYEV+K +EG TICALGDAAAWPIQGLIK+FRP IE RI   
Sbjct: 361 RMMERLVRGEAEPHEIDTLYEVTKQVEGHTICALGDAAAWPIQGLIKHFRPEIERRIAAR 420

Query: 420 H 420
           H
Sbjct: 421 H 421


>gi|303311397|ref|XP_003065710.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240105372|gb|EER23565.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
          Length = 529

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L ++M  G W    +IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 79  LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEET+
Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 499 KFAQQN 504


>gi|83592895|ref|YP_426647.1| NADH dehydrogenase I subunit F [Rhodospirillum rubrum ATCC 11170]
 gi|83575809|gb|ABC22360.1| NADH-quinone oxidoreductase, F subunit [Rhodospirillum rubrum ATCC
           11170]
          Length = 429

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 295/421 (70%), Positives = 339/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG Q   L+ +  RG WD    IL KGRD IINE+KASGLRGRGGAGF
Sbjct: 1   MLNDKDRIFTNLYGFQDWRLAGARKRGDWDGTGAILAKGRDGIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK   +RPHYLVVNADE EPGTCKDRD+MR +PH LIEGC+IA FA+GAH 
Sbjct: 61  PTGLKWSFMPKDIGERPHYLVVNADEGEPGTCKDRDMMRFDPHKLIEGCLIAGFAMGAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF RE E L+ A+ E   +GLLG N+   G+D+++ VH GAGAYICGEETAL+
Sbjct: 121 AYIYIRGEFFREAEHLEFAIAEAREAGLLGPNACGSGWDMEVYVHRGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRG +W++G GRENN GT
Sbjct: 181 QSLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGRENNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE M I   ELI+KH GG+RGGWDNLL VIPGG+SVP LP     
Sbjct: 241 KVFCISGHVNKPCNVEEEMGIPLRELIDKHAGGVRGGWDNLLGVIPGGASVPVLPRELCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTAAV+VMD+STDI++AI RLS FY HESCGQCTPCREGTGW+ 
Sbjct: 301 DVLMDFDSLKAVKSGLGTAAVMVMDKSTDIVRAIARLSAFYTHESCGQCTPCREGTGWLS 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLV G A   EID+L +V++ IEG TICALGDAAAWPIQGLI++FRP IE RI + 
Sbjct: 361 RVMTRLVNGDAAIEEIDVLEQVTRQIEGHTICALGDAAAWPIQGLIRHFRPEIERRIIEK 420

Query: 420 H 420
            
Sbjct: 421 R 421


>gi|77463076|ref|YP_352580.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides 2.4.1]
 gi|77387494|gb|ABA78679.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain F [Rhodobacter
           sphaeroides 2.4.1]
          Length = 431

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 291/421 (69%), Positives = 348/421 (82%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+Q +SL  +M+RG WD    +L  GRD II+ VKASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMQDRSLKGAMARGQWDGTADLLALGRDKIIDIVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTL+EG ++A FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPAYLVINADESEPATCKDREIMRHDPHTLVEGALLAGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE++RE+E+LQAA+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEYVREKEALQAAIDEAYDAGLIGQNAAKSGYDFDVYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAV+P ILRRG  W++ FGR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFASFGRPNNAGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC +EESMSI+  ELIEKH GG+RGGW NL AVIPGG+S P +PA Q  
Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MDYDG++E+ S  GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM
Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV+G A+  EID+L  V+K +EG TICALGDAAAWPIQGLI+++R  IE+RI   
Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIKAK 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|156042201|ref|XP_001587658.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Sclerotinia sclerotiorum 1980]
 gi|154696034|gb|EDN95772.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 508

 Score =  538 bits (1387), Expect = e-151,   Method: Composition-based stats.
 Identities = 270/426 (63%), Positives = 321/426 (75%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L+ +   G W     IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 59  LRDQDRIFQNLYGHHGADLASAKKYGDWHRTKDILAKGHDWIISEIKASGLRGRGGAGFP 118

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +GMKWSFM     +    P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+  
Sbjct: 119 SGMKWSFMNFKGWENDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNC 178

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y  GL+G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 179 TAAYIYIRGEFYHEATVLQRAIQEAYKDGLIGKNACGSGYDFDVYVHRGMGAYVCGEETS 238

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA+VGL+GCP+TV NVE+IAV PTI RRG  W++ FGRE N 
Sbjct: 239 LIESLEGKPGKPRLKPPFPASVGLFGCPSTVANVETIAVAPTICRRGGDWFASFGRERNA 298

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNL AVIPGGSS P LP   
Sbjct: 299 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKNV 358

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 359 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 418

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 419 TEQIMQRFEKGQGKIREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMK 478

Query: 418 QYHRCN 423
            Y   N
Sbjct: 479 DYAEKN 484


>gi|119194275|ref|XP_001247741.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Coccidioides immitis RS]
          Length = 529

 Score =  538 bits (1386), Expect = e-151,   Method: Composition-based stats.
 Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L ++M  G W    +IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 79  LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEET+
Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 499 KFAQQN 504


>gi|126461948|ref|YP_001043062.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides ATCC 17029]
 gi|221638932|ref|YP_002525194.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides KD131]
 gi|332557949|ref|ZP_08412271.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides WS8N]
 gi|126103612|gb|ABN76290.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221159713|gb|ACM00693.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides
           KD131]
 gi|332275661|gb|EGJ20976.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides WS8N]
          Length = 431

 Score =  538 bits (1386), Expect = e-151,   Method: Composition-based stats.
 Identities = 291/421 (69%), Positives = 348/421 (82%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+Q +SL  +M+RG WD    +L  GRD II+ VKASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMQDRSLKGAMARGQWDGTADLLALGRDKIIDIVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTL+EG ++A FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPAYLVINADESEPATCKDREIMRHDPHTLVEGALLAGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE++RE+E+LQAA+DE Y +GL+G N+ K GYD D+ +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEYVREKEALQAAIDEAYDAGLIGRNAAKSGYDFDVYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAV+P ILRRG  W++ FGR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFASFGRPNNAGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC +EESMSI+  ELIEKH GG+RGGW NL AVIPGG+S P +PA Q  
Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MDYDG++E+ S  GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM
Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV+G A+  EID+L  V+K +EG TICALGDAAAWPIQGLI+++R  IE+RI   
Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIKAK 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|296283840|ref|ZP_06861838.1| NADH dehydrogenase I subunit F [Citromicrobium bathyomarinum JL354]
          Length = 431

 Score =  538 bits (1386), Expect = e-151,   Method: Composition-based stats.
 Identities = 298/419 (71%), Positives = 347/419 (82%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG Q   L  + +RG WD+   +L KG+D II+++KASGLRGRGGAGF 
Sbjct: 3   LQDKDRIFTNLYGFQDWGLKAAQARGDWDDTKALLAKGQDSIIDDMKASGLRGRGGAGFP 62

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D    +LV+NADESEPG+CKDR+IMRH+PH LIEG ++A FA+ A  
Sbjct: 63  TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIMRHDPHKLIEGALVAGFAMRARA 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+IRE E+LQ A+DE Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+
Sbjct: 123 AYIYIRGEYIREAETLQKAIDEAYDAGLIGKNACGSGYDYDVFLHRGAGAYICGEETALI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTILRRG SW++ FGRE N GT
Sbjct: 183 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGPSWFASFGREKNDGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHV  PC VEE MSI F ELIE+HCGG+RGGWDNLLAVIPGGSSVP +PA Q+ 
Sbjct: 243 KLFQISGHVEKPCVVEEEMSIPFRELIERHCGGVRGGWDNLLAVIPGGSSVPLVPAEQIM 302

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGLKE+GSGLGTAAVIVMD+STDI++AI R+S FYKHESCGQCTPCREGTGWM 
Sbjct: 303 DAPMDFDGLKELGSGLGTAAVIVMDKSTDIVRAISRISYFYKHESCGQCTPCREGTGWMW 362

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVM+RL  G A   EID+L+ V+K +EG TICALGDAAAWPIQGLI++FRP +E RI +
Sbjct: 363 RVMKRLETGDADIDEIDMLHTVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIAE 421


>gi|320039567|gb|EFW21501.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 529

 Score =  538 bits (1386), Expect = e-151,   Method: Composition-based stats.
 Identities = 273/426 (64%), Positives = 333/426 (78%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L ++M  G W    +IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 79  LKDQDRIFQNLYGRHGPDLKNAMKCGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 138

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 139 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 198

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEET+
Sbjct: 199 TAAYIYIRGEFYHEATILQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 258

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 259 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 318

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 319 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 378

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 379 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 438

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 439 TMQIMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIQ 498

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 499 KFAQQN 504


>gi|189183823|ref|YP_001937608.1| NADH dehydrogenase I subunit F [Orientia tsutsugamushi str. Ikeda]
 gi|189180594|dbj|BAG40374.1| NADH dehydrogenase I chain F [Orientia tsutsugamushi str. Ikeda]
          Length = 422

 Score =  538 bits (1386), Expect = e-151,   Method: Composition-based stats.
 Identities = 272/421 (64%), Positives = 326/421 (77%), Gaps = 2/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +D+IFTNL G     L+ +  RG W     ++   R+WII E+K SGLRGRGGAGF
Sbjct: 1   MLNIEDKIFTNLSGSMAVDLASAKKRGDWHATKDLILNSREWIIEEIKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  S++  YLVVNADESEPGTCKDRDI+R+EPH LIEGC++A++AIGA  
Sbjct: 61  PTGLKWSFMPKN-SEKATYLVVNADESEPGTCKDRDIIRYEPHKLIEGCLLAAYAIGAQT 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+  E   LQ A+ E Y + L+G NS    ++ ++ +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEYYNEALILQNAIQEAYDARLIGLNSCGTDFNFNLYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPAN+GLYGCPTT+NNVESIAVVPTILRRGA W++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPANIGLYGCPTTINNVESIAVVPTILRRGAKWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FSISGHVN PC +EE+M +    LIEK+ GG+RGGWDNL A+IPGGSSVP +P     
Sbjct: 240 KIFSISGHVNNPCNIEEAMGVPLKYLIEKYAGGVRGGWDNLKAIIPGGSSVPLIPKNICD 299

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D LK +GSGLGT  +IVMD +TDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 300 TVEMDFDSLKSVGSGLGTGGIIVMDNNTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M RLVKG A   +ID+L +V+K IEG TICALGDAAAWPIQGLIK+FR  IE+RI  +
Sbjct: 360 RIMMRLVKGSASVSDIDMLLDVTKQIEGNTICALGDAAAWPIQGLIKHFRHEIEDRIKNF 419

Query: 420 H 420
           +
Sbjct: 420 N 420


>gi|89053670|ref|YP_509121.1| NADH dehydrogenase I subunit F [Jannaschia sp. CCS1]
 gi|88863219|gb|ABD54096.1| NADH dehydrogenase subunit F [Jannaschia sp. CCS1]
          Length = 431

 Score =  538 bits (1385), Expect = e-151,   Method: Composition-based stats.
 Identities = 309/419 (73%), Positives = 358/419 (85%), Gaps = 2/419 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG+  +SL+ +  RGHWD    ++  GRD I+  +KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGMHDRSLAGAKQRGHWDGTKDLIGLGRDKIVEIMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+IMR++PHTLIEGC+IASFA+ A+ 
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREIMRNDPHTLIEGCLIASFAMNANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+DE Y  GLLG ++ K G+D D+ + HGAGAYICGEETALL
Sbjct: 121 CYIYIRGEYIREREALQAAIDEAYEDGLLGKDAAKSGWDFDLYLAHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG+KG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++GFGR NN GT
Sbjct: 181 ESLEGRKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFAGFGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE+MSI+F+ELIE HCGGIRGGWDNL AVIPGGSSVPC+    MR
Sbjct: 241 KLFAISGHVNQPCVVEEAMSISFEELIETHCGGIRGGWDNLKAVIPGGSSVPCVRGENMR 300

Query: 300 GAIMDYDGLK-EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            AIMD+D L+ ++ SGLGTAAVIVMD STD+IKAIWRL+ FYKHESCGQCTPCREGTGWM
Sbjct: 301 DAIMDFDYLRNDLQSGLGTAAVIVMDNSTDMIKAIWRLAAFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MRVMERLVKG AQ  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI 
Sbjct: 361 MRVMERLVKGEAQVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFRDEIEDRIR 419


>gi|319407262|emb|CBI80901.1| NADH dehydrogenase I chain F [Bartonella sp. 1-1C]
          Length = 435

 Score =  538 bits (1385), Expect = e-151,   Method: Composition-based stats.
 Identities = 321/425 (75%), Positives = 367/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + KSL  ++ RGHWD    I+EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQAA+DECY +GLLG  +K G+  DIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHACDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT E+++ ++F ELIEKH GGIRGGW NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGIRGGWSNLLAVIPGGASCPIVRGEDMIN 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK IEG TICALGDAAAWPIQGLI+NFR  IE RID Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQIEGHTICALGDAAAWPIQGLIRNFRSEIERRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RSAVQ 425


>gi|85374157|ref|YP_458219.1| NADH dehydrogenase I subunit F [Erythrobacter litoralis HTCC2594]
 gi|84787240|gb|ABC63422.1| NADH-ubiquinone dehydrogenase chain F 1 [Erythrobacter litoralis
           HTCC2594]
          Length = 430

 Score =  538 bits (1385), Expect = e-151,   Method: Composition-based stats.
 Identities = 293/422 (69%), Positives = 352/422 (83%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG Q   L  + +RG WD+   ++ +G + II E+K SGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNVYGFQDWGLKAAQARGDWDDTKALIARGEENIIEEIKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   D    +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A 
Sbjct: 61  PTGLKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGE+IRE E+LQAA+DE Y +GL+G N+   G+D D+ +H GAGAYICGEETA+
Sbjct: 121 AAYIYIRGEYIREAETLQAAIDEAYDAGLIGKNASGSGFDYDVFLHRGAGAYICGEETAM 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVVPTILRRG +W++ FGRENN G
Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGGNWFASFGRENNHG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHV  PC VEE+MSI F+ELIEKHCGGI GGWDNLLAVIPGGSSVP +PA Q+
Sbjct: 241 TKLFQISGHVEKPCVVEEAMSIPFEELIEKHCGGITGGWDNLLAVIPGGSSVPLVPAEQI 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
           R A MD+DGLK++GSGLGTAAVIVMD+STDI++AI R+S FYKHESCGQCTPCREGTGWM
Sbjct: 301 RQAPMDFDGLKDVGSGLGTAAVIVMDKSTDIVRAISRISYFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R+MERL  G A   EID+L +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI++
Sbjct: 361 WRMMERLRTGDAAIEEIDMLQQVTKQVEGHTICALGDAAAWPIQGLIRHFRPELERRIEE 420

Query: 419 YH 420
           ++
Sbjct: 421 HN 422


>gi|83025076|ref|NP_001032653.1| hypothetical protein LOC641566 [Danio rerio]
 gi|82414771|gb|AAI10121.1| Zgc:123290 [Danio rerio]
          Length = 479

 Score =  538 bits (1385), Expect = e-151,   Method: Composition-based stats.
 Identities = 270/419 (64%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  + +RG W    ++L KG +WI+NE+K SGLRGRGGAGF 
Sbjct: 48  LSDEDRIFTNLYGRHDWRLKGAEARGDWYKTKEVLLKGHEWILNEMKKSGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 108 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 167

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +G LG N+   GYD D+ VH GAGAYICGE+TAL+E
Sbjct: 168 YIYIRGEFYNEGTNLQVAIHEAYKAGYLGKNACNSGYDFDVFVHRGAGAYICGEKTALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV PTI+RRG  W++  GR  N GTK
Sbjct: 228 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTIVRRGGEWFASLGRPRNSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   EL+EKH GG+ GGWDNLLA+ PGGSSVP LP      
Sbjct: 288 LFNISGHVNNPCTVEEEMSIPLKELVEKHAGGVLGGWDNLLAITPGGSSVPMLPKNLCEE 347

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVM++ TD++KAI RLS FYKHESCGQCTPCREGTGW+ +
Sbjct: 348 VLMDFDSLLAAQSGLGTAAVIVMNKQTDVVKAIARLSEFYKHESCGQCTPCREGTGWLTK 407

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R V G A+  EID+++E++K IEG TICALGDAAAWP+QGLI++FRP +E R+ +Y
Sbjct: 408 MMYRFVDGNARPEEIDMIWELTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMQEY 466


>gi|225708652|gb|ACO10172.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Osmerus
           mordax]
          Length = 472

 Score =  538 bits (1385), Expect = e-151,   Method: Composition-based stats.
 Identities = 278/421 (66%), Positives = 336/421 (79%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+DQDRIFTNLYG     L  ++SRG W    +IL KG DWIINE+K+SGLRGRGGAGF 
Sbjct: 46  LSDQDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGVDWIINEIKSSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A   +GA  A
Sbjct: 106 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRCMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A++E YA+GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNESSNLQVAINEAYANGLIGRNACGSGYDFDVFVMRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 226 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN P TVEE MSI   ELIE+H GG+RGGWDNLLAVIPGGSS P +P      
Sbjct: 286 LFNISGHVNTPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAVIPGGSSTPMIPRSVCET 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  +GLGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG  WM  
Sbjct: 346 VLMDFDGLIQAQTGLGTAAIIVMDKSTDVIKAIARLIEFYKHESCGQCTPCREGVDWMNT 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V+G A++ EID+++E+SK IEG TICALGD AAWP+QGLI++FRP++E RI ++ 
Sbjct: 406 MMWRFVRGDAKEAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPVMESRIAEFQ 465

Query: 421 R 421
            
Sbjct: 466 E 466


>gi|308811771|ref|XP_003083193.1| PREDICTED P0503D09.102 gene product [Oryza sativa (ISS)
           [Ostreococcus tauri]
 gi|116055072|emb|CAL57468.1| PREDICTED P0503D09.102 gene product [Oryza sativa (ISS)
           [Ostreococcus tauri]
          Length = 491

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 285/416 (68%), Positives = 340/416 (81%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D DRIFTNLYG     L  +M+RG W    K++E G DWI+NE+KASGLRGRGGAGF 
Sbjct: 65  LSDADRIFTNLYGRHDPFLKGAMARGDWYETKKLVELGADWIVNEMKASGLRGRGGAGFP 124

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA  A+ A  A
Sbjct: 125 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGTAMRARAA 184

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A+ E YA+G LG ++   G D D+ +H+GAGAYICGEETAL+E
Sbjct: 185 YIYIRGEYVNERLALERALAEAYAAGFLGKDACGTGLDFDVNIHYGAGAYICGEETALIE 244

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 245 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVAPTILRRGPEWFASFGRKNNAGTK 304

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   +LIEKHCGG+RGGWDNLLAVIPGGSSVP +       
Sbjct: 305 LFCISGHVNNPCTVEEEMSIPLKDLIEKHCGGVRGGWDNLLAVIPGGSSVPMITKDVCDD 364

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK +GSGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 365 VLMDFDALKGVGSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTSWIYN 424

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +M+RLVKG A+  E+++L E++K IEG TICALGDAAAWP+QGL+KNF PLI ERI
Sbjct: 425 IMKRLVKGDARLEEVEMLQEITKQIEGHTICALGDAAAWPVQGLLKNFSPLIRERI 480


>gi|302684473|ref|XP_003031917.1| hypothetical protein SCHCODRAFT_257275 [Schizophyllum commune H4-8]
 gi|300105610|gb|EFI97014.1| hypothetical protein SCHCODRAFT_257275 [Schizophyllum commune H4-8]
          Length = 501

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 272/426 (63%), Positives = 330/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN Y      L  + SRG W     I+ KG  WII  +K SGLRGRGGAGF 
Sbjct: 40  LKDQDRIFTNAYCRHDHGLKGAKSRGDWHRTKDIILKGDSWIIQTIKDSGLRGRGGAGFP 99

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K   +   RP YLVVNADE EPGTCKDR+I+R +PH LIEGC++A  A+ A
Sbjct: 100 SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREILRGDPHKLIEGCLVAGRAMNA 159

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF +E   +Q A++E YA+GL+G ++   GY  D+ +H GAGAYICGEETA
Sbjct: 160 TAAYIYIRGEFFQEASHVQQAINEAYAAGLIGKDACGSGYSFDVYLHRGAGAYICGEETA 219

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N+
Sbjct: 220 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGSWFASFGRERNQ 279

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PC VEE MSI   +LIEKHCGG+ GGWDNLL ++PGGSSVP LP  +
Sbjct: 280 GTKLFCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVIGGWDNLLGIVPGGSSVPILPIDK 339

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK+  SGLGT AVIVMD+STD++ AI R + FYKHESCGQCTPCREGT W
Sbjct: 340 CSEVLMDYDSLKDAQSGLGTGAVIVMDKSTDVVSAIARFASFYKHESCGQCTPCREGTTW 399

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM +M R+V+G    REID+L E+SK IEGRTICALGDAAAWPIQGL+++FRP +E+RI+
Sbjct: 400 MMNMMNRMVEGRGHVREIDMLLEISKQIEGRTICALGDAAAWPIQGLMRHFRPEVEKRIE 459

Query: 418 QYHRCN 423
           ++ R N
Sbjct: 460 EFRRAN 465


>gi|125559373|gb|EAZ04909.1| hypothetical protein OsI_27090 [Oryza sativa Indica Group]
          Length = 529

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 101 LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 160

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 161 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 220

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L  A +E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 221 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 280

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 281 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 340

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 341 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 400

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 401 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 460

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 461 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 508


>gi|225713920|gb|ACO12806.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 463

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 276/421 (65%), Positives = 325/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +MSRG W    +I+ KG DWIINEVK SGLRGRGGAGF 
Sbjct: 34  LKDSDRIFTNLYGRHDWRLKGAMSRGDWYKTKEIVLKGADWIINEVKVSGLRGRGGAGFP 93

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 94  SGMKWSFMQKPDDGRPKYLVINADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 153

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVRGEF  E  +LQ A+ E Y  G LG NS   GYD D+ VH GAGAYICGEETAL+E
Sbjct: 154 YIYVRGEFYNETTNLQVAIKEAYTKGFLGKNSCGTGYDFDVFVHRGAGAYICGEETALIE 213

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+S FGR  N GTK
Sbjct: 214 SLEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVAPTICRRGGTWFSSFGRPRNTGTK 273

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF++SGHVN PCTVEE MS+   ELIE+H GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 274 LFNVSGHVNNPCTVEEEMSVPLKELIERHAGGVIGGWDNLLAVIPGGSSTPLIPKHVCND 333

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAAVIVM++  D++KAI RL+ FYKHESCGQCTPCREG  WM  
Sbjct: 334 VMMDFDALIAAQTGLGTAAVIVMNKQCDVVKAIARLATFYKHESCGQCTPCREGCNWMDT 393

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V+G AQ  EID+L+E++K IEG TICAL D AAWP+QGLI++FRP +E R ++YH
Sbjct: 394 MMWRFVEGNAQAGEIDMLWELTKQIEGHTICALADGAAWPVQGLIRHFRPELEARFEEYH 453

Query: 421 R 421
           R
Sbjct: 454 R 454


>gi|327260438|ref|XP_003215041.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like [Anolis carolinensis]
          Length = 467

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 282/425 (66%), Positives = 334/425 (78%), Gaps = 1/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 39  LKDEDRIFTNLYGRHDWGLKGALSRGDWYKTKEILLKGVDWILNEIKTSGLRGRGGAGFP 98

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+GA  A
Sbjct: 99  TGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 158

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 159 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVARGAGAYICGEETALIE 218

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW+ GFGRE N GTK
Sbjct: 219 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGSWFVGFGRERNSGTK 278

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG++GGWDNLLAVIPGGSS P +P      
Sbjct: 279 LFNISGHVNTPCTVEEEMSIPLRDLIERHAGGVKGGWDNLLAVIPGGSSTPLIPKSVCET 338

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  +GLGTAAVIVMD+STD+++AI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 339 VLMDFDGLIQAQTGLGTAAVIVMDKSTDLVRAIARLIEFYKHESCGQCTPCREGVDWMNK 398

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R VKG AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ QYH
Sbjct: 399 VMWRFVKGNAQVAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMRQYH 458

Query: 421 RCNFQ 425
               Q
Sbjct: 459 ESKAQ 463


>gi|159489210|ref|XP_001702590.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Chlamydomonas
           reinhardtii]
 gi|158280612|gb|EDP06369.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Chlamydomonas
           reinhardtii]
          Length = 484

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 283/417 (67%), Positives = 337/417 (80%), Gaps = 1/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIF N+YG    S+  +MSRG W    +I+ KGRDWII+++K SGLRGRGGAGF 
Sbjct: 56  LKDEDRIFQNIYGRHDLSIKGAMSRGDWYMTKEIIGKGRDWIIDQMKKSGLRGRGGAGFP 115

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC++A  A+GA   
Sbjct: 116 SGLKWSFMPKASDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLMAGVAMGARAG 175

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF++ER +++ A+ E YA G LG N+   G D D++VH+GAGAYICGEETAL+E
Sbjct: 176 YIYIRGEFVQERRAVERAISEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETALIE 235

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 236 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 295

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN P TVEE MSI   ELIE+H GG+RGGWDNLLA+IPGGSSVP LP     G
Sbjct: 296 LFCISGHVNRPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLPKKICDG 355

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LKE  SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 356 VLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWLYD 415

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +M R+ KG A+  EID+L+E++K IEG TICALGDAAAWP+QGLI++FR  +EERI 
Sbjct: 416 IMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRGEMEERIK 472


>gi|83311881|ref|YP_422145.1| NADH dehydrogenase I subunit F [Magnetospirillum magneticum AMB-1]
 gi|82946722|dbj|BAE51586.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 427

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 295/417 (70%), Positives = 337/417 (80%), Gaps = 1/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTNLYG+    L  +M+RG W+    IL KGRDWII E+K SGLRGRGGAGF
Sbjct: 1   MLRDSDRIFTNLYGIHDWRLKGAMARGDWNGTKDILAKGRDWIIEEMKNSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+NADE EPGTCKDR++MR +PH LIEG +IASFAIGAH 
Sbjct: 61  PTGVKWSFMPKTEGPRPHYLVINADEGEPGTCKDREMMRFDPHKLIEGALIASFAIGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF+RE E L  A+DE  A+GLLG N+   G+D ++ VH GAGAYICGEE+AL+
Sbjct: 121 AYIYIRGEFVREAEHLNIAIDEARAAGLLGPNACGSGWDCEVYVHRGAGAYICGEESALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRGA+W+SG G+ NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGAAWFSGLGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE M I   ELIEKH GG+RGGWDNLLA+IPGGSSVP L   Q  
Sbjct: 241 KVFCISGHVNTPCNVEEEMGIPLKELIEKHAGGVRGGWDNLLAIIPGGSSVPMLTKQQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ M SGLGTAAV+VMD+STD+++AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 301 EVTMDFDALRAMRSGLGTAAVMVMDKSTDLVRAIHRLSRFYWHESCGQCTPCREGTGWMS 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+M R+V G A+  EIDLL E+S+ IEG TICALGDAAAWPIQGLI+ FRP +E RI
Sbjct: 361 RMMGRMVTGDAELSEIDLLEEISRQIEGHTICALGDAAAWPIQGLIRAFRPEMERRI 417


>gi|162148806|ref|YP_001603267.1| NADH dehydrogenase I subunit F [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209545446|ref|YP_002277675.1| NADH dehydrogenase subunit I F [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787383|emb|CAP56978.1| NADH-quinone oxidoreductase chain F [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533123|gb|ACI53060.1| NADH-quinone oxidoreductase, F subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 441

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 290/421 (68%), Positives = 341/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG Q   L+ + +RG WD   +I+ +GRD IINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNLYGQQDWRLAGARARGDWDGTAEIIARGRDAIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+N DESEPGTCKDR+I+RH+PH LIE  +IASFA+GAH 
Sbjct: 61  PTGVKWSFMPKNSDGRPHYLVINGDESEPGTCKDREILRHDPHKLIESALIASFAMGAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   LQ A+DE YA+GL+G N+   G+D D  +H GAGAYICGEETALL
Sbjct: 121 AYIYIRGEFFNEARHLQIAIDEAYAAGLIGQNAAGSGWDFDFYIHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV  TILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVAATILRRGATWFSSLGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +ISGHVN PC  EE + +   ++IEKH GG+RGGWDNLLAVIPGGSSVP LPA    
Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLKDIIEKHGGGVRGGWDNLLAVIPGGSSVPLLPASVCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+   SGLGTA +IVMD+STD+I+AI R S FYKHESCGQCTPCREGTGWMM
Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDVIRAIARFSQFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM R+V+G A+  EID+L +V++ +EG TICALGDAAAWPIQGLI++FRP++EERI  Y
Sbjct: 361 RVMHRMVEGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRHFRPVMEERIRAY 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|148555895|ref|YP_001263477.1| NADH dehydrogenase I subunit F [Sphingomonas wittichii RW1]
 gi|148501085|gb|ABQ69339.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas wittichii RW1]
          Length = 432

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 296/420 (70%), Positives = 345/420 (82%), Gaps = 2/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG Q  +L  +  RG WD+   +L +G D II ++KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFTNVYGFQPWNLEAARKRGDWDDTKALLARGPDQIIEDIKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK     RP +LV+NADESEPG+CKDR+I+RH+PH LIEG ++A FA+ A 
Sbjct: 61  PTGMKWSFMPKEPKPGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALVAGFAMRAR 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEFI E + L AAV+E YA+GLLG N+   GYD D+ VH GAGAYICGEETA 
Sbjct: 121 AAYIYIRGEFIYEAKVLFAAVEEAYAAGLLGKNAAGSGYDFDVFVHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRRGA+W++G GRE N+G
Sbjct: 181 IESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGAAWFAGIGREGNKG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHVN PC VEE+M I F ELI++H GGIRGGWDNLLAVIPGGSSVP +PA Q+
Sbjct: 241 TKLFQISGHVNKPCVVEEAMGIPFRELIDRHAGGIRGGWDNLLAVIPGGSSVPLVPAAQI 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM
Sbjct: 301 MDAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RVMERL  G A+  EID L +V+K +EG TICALGDAAAWPIQGL+++FRP +E RI +
Sbjct: 361 WRVMERLRTGEARIDEIDTLLDVTKQVEGHTICALGDAAAWPIQGLLRHFRPEVERRIRE 420


>gi|328856677|gb|EGG05797.1| hypothetical protein MELLADRAFT_43743 [Melampsora larici-populina
           98AG31]
          Length = 510

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 266/426 (62%), Positives = 329/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF N Y      L  + +RG W     I+ KG D++I E+K SGLRGRGGAGF 
Sbjct: 49  LRDSDRIFQNAYMRHDHLLKGAQARGDWHRTKDIILKGHDYLIKEIKDSGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKV---CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 109 SGLKWSFMNKPGFEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 168

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI E   LQ A++E Y +GL+G N+   GYD D+ +H GAGAYICGEETA
Sbjct: 169 SAAYIYIRGEFIMEAAHLQNAIEEAYKAGLIGKNACNSGYDFDVYLHRGAGAYICGEETA 228

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI+RRGASW++ FGRE N 
Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIIRRGASWFNSFGRERNS 288

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PC VEE MSI   +LI+KHCGG+ GGWDNLL ++PGGSSVP L   +
Sbjct: 289 GTKLFCISGHVNTPCVVEEEMSIPLRDLIDKHCGGVIGGWDNLLGIVPGGSSVPVLTKPE 348

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
              A+MD+D LK++ SGLGT AVIVM++STD+I AI R + FYKHESCGQCTPCREGT W
Sbjct: 349 CEEALMDFDSLKDLQSGLGTGAVIVMNKSTDMISAIARFAKFYKHESCGQCTPCREGTTW 408

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M ++M+RLV G A +RE+D+L+E+++ IEG TICALGDAAAWPIQGL++ F+P +E RI 
Sbjct: 409 MEKIMDRLVVGRAHERELDMLWELTRQIEGHTICALGDAAAWPIQGLLRKFKPEVEARIQ 468

Query: 418 QYHRCN 423
           ++   N
Sbjct: 469 EFRSKN 474


>gi|240850588|ref|YP_002971988.1| NADH dehydrogenase I subunit F [Bartonella grahamii as4aup]
 gi|240267711|gb|ACS51299.1| NADH dehydrogenase I subunit F [Bartonella grahamii as4aup]
          Length = 435

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 316/421 (75%), Positives = 371/421 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +M RGHW+ + ++++KGRDWII+EVKASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGLKDKSLKAAMLRGHWNGLKEMIDKGRDWIIDEVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGC IA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQNDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCAIATFAMGANV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIY+RGE+IRERE+LQAAVDECY +GLLG  +K G+  DII+HHGAGAYICGEETALLE
Sbjct: 121 AFIYIRGEYIREREALQAAVDECYDAGLLGKKTKYGHACDIIIHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGIYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT E+++ ++F ELIEKH GG+RGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGVRGGWNNLLAVIPGGASCPVVRGEDMID 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWP+QGLI+NFRP IE RID+Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPVQGLIRNFRPEIERRIDEYT 420

Query: 421 R 421
           R
Sbjct: 421 R 421


>gi|119384975|ref|YP_916031.1| NADH dehydrogenase I subunit F [Paracoccus denitrificans PD1222]
 gi|119374742|gb|ABL70335.1| NADH dehydrogenase subunit F [Paracoccus denitrificans PD1222]
          Length = 431

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 307/418 (73%), Positives = 354/418 (84%), Gaps = 1/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL+ +  RGHWD    I+++GRD II+E+KASGLRGRGGAGF
Sbjct: 1   MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH 
Sbjct: 61  PTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFIRERE+LQAA+DECY +GLLG N+   G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ++GHVN PC VEE+MSI   ELIEKH GGIRGGW NL AVIPGG+S P L A Q  
Sbjct: 241 KLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMDYDG++E+ S  GTA +IVMD+STD++KAIWRLS F+KHESCGQCTPCREGTGWMM
Sbjct: 301 NAIMDYDGMRELRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVMERLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI 
Sbjct: 361 RVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIK 418


>gi|299135027|ref|ZP_07028218.1| NADH-quinone oxidoreductase, F subunit [Afipia sp. 1NLS2]
 gi|298590004|gb|EFI50208.1| NADH-quinone oxidoreductase, F subunit [Afipia sp. 1NLS2]
          Length = 441

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 299/422 (70%), Positives = 347/422 (82%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L  +  RG WD    I++KGRDWI++E+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFKNLYGLHDWGLEGARRRGAWDGTKAIIDKGRDWIVSEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GAH
Sbjct: 61  PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+IY+RGEFIRERE LQAAVD+ Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 AAYIYIRGEFIREREHLQAAVDQAYEAKLIGKDNVHGWPFDLYVTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFAAIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VE+++ ITF ELIEKH GGIRGGWDNLLA+IPGG+S P +PA    
Sbjct: 241 KLFGISGHVNTPCVVEDALGITFKELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAHDCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S LGTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSLGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLTRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 TR 422


>gi|115524534|ref|YP_781445.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisA53]
 gi|115518481|gb|ABJ06465.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 441

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 300/422 (71%), Positives = 348/422 (82%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF N+YGL    L  +  RG WD    I++KG+DWIINE+KASGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNVYGLGDWGLDGARRRGGWDGTKAIIDKGKDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PHTL+EGC++ASFA+GAH
Sbjct: 61  PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHTLVEGCLLASFAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A++YVRGEFIRERE LQAA+D+ Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 TAYVYVRGEFIRERERLQAAIDQAYEARLIGKDNIHGWPFDLYVTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W++  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFASIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE+MSI F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA   +
Sbjct: 241 KLFGISGHVNTPCVVEEAMSIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCQ 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S  GTA VIVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSFGTAGVIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+V+G A +REID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLSRMVEGRAHRREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|319404254|emb|CBI77847.1| NADH dehydrogenase I chain F [Bartonella rochalimae ATCC BAA-1498]
          Length = 435

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 320/425 (75%), Positives = 368/425 (86%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YG + KSL  ++ RGHWD    I+EKGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNIYGFKDKSLKAAVLRGHWDGTKAIIEKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLVVNADESEPGTCKDRDI+RH+PHTLIEGCVIA+FA+GA+ 
Sbjct: 61  PTGMKWSFMPKQSDGRPHYLVVNADESEPGTCKDRDILRHDPHTLIEGCVIATFAMGANI 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           AFIYVRGE+IRERE+LQAA+DECY +GLLG  +K G+  DIIVHHGAGAYICGEETALLE
Sbjct: 121 AFIYVRGEYIREREALQAAIDECYEAGLLGKKTKYGHACDIIVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+G+YGCPTTVNNVESIAVVPTILRRGASW+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGVYGCPTTVNNVESIAVVPTILRRGASWFSSIGRANNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCT E+++ ++F ELIEKH GGIRGGW+NLLAVIPGG+S P +    M  
Sbjct: 241 LFMVSGHVNAPCTFEDALGVSFRELIEKHTGGIRGGWNNLLAVIPGGASCPIVRGEDMIN 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DG++++GS  GT  +IVMD+STDIIKAIWR++ F+KHESCGQCTPCREGTGWMMR
Sbjct: 301 AIMDFDGMRDVGSSFGTGGMIVMDKSTDIIKAIWRIAAFFKHESCGQCTPCREGTGWMMR 360

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+V+G AQKREIDLL+EVSK +EG TICALGDAAAWPIQGLI+NFR  IE RID Y 
Sbjct: 361 LLGRMVEGRAQKREIDLLFEVSKQVEGHTICALGDAAAWPIQGLIRNFRSEIERRIDDYT 420

Query: 421 RCNFQ 425
           R   Q
Sbjct: 421 RSAVQ 425


>gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
 gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
          Length = 610

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 162/420 (38%), Positives = 248/420 (59%), Gaps = 5/420 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q +I T NL  +    + + ++R  +  + K L+   + +I E+K SGLRGRGGAG
Sbjct: 114 FFKKQVKIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAG 173

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW    K  ++   ++V NADE +PG   DR ++  +PH +IEG  IA++AIGA 
Sbjct: 174 FPTGLKWELAAKQKAE-KKFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQ 232

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             F+YVR E+    E L  A+++    G LG N     +  DI +  GAGA++CGEETAL
Sbjct: 233 KGFVYVRAEYPLAIERLSIALEQAREYGFLGENIMGTDFSFDIEIRIGAGAFVCGEETAL 292

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG++GQPR+KPP+P   GL+G PT +NNVE++A VP I+R GA  +  +G E + G
Sbjct: 293 MASIEGERGQPRVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTETSPG 352

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G V     VE  M IT  ELI +  GGI G    L AV  GG S  C+PA  +
Sbjct: 353 TKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIVGD-KKLKAVQTGGPSGGCIPAEYI 411

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D++ L+++G+ +G+  +IVMD    ++        F   ESCG+CTPCREGT  M
Sbjct: 412 -DTPVDFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKM 470

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++E++  G   + +I+ L +++  I+  ++C LG  A  P+   ++ FR      + +
Sbjct: 471 LEILEKITSGEGTEEDIEELEKLANVIKDTSLCGLGQTAPNPVLSTLRYFRDEYLAHVRE 530


>gi|242019360|ref|XP_002430129.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212515220|gb|EEB17391.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 472

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 265/420 (63%), Positives = 323/420 (76%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +  RG W    +IL KG DWIINE+K SGLRGRGGAGF 
Sbjct: 45  LCDDDRIFTNLYGRHDWRLCGAYKRGDWYKTKEILHKGPDWIINEIKISGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+I+R++PH LIEGC++A  A+GA  A
Sbjct: 105 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREILRNDPHKLIEGCLVAGRAMGAQAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 165 YIYIRGEFYNEASNMQIAIAEAYQAGLIGKNACNSGYDFDVFMHRGAGAYICGEETALIE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++G++GCPTTV+NVE++AV PTI RRG SW++ FGR  N GTK
Sbjct: 225 SIEGKQGKPRLKPPFPADIGVFGCPTTVSNVETVAVAPTICRRGGSWFASFGRPRNSGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELI+ H G + GGWDNLLA+IPGGSS P +P      
Sbjct: 285 LFNISGHVNNPCTVEEEMSIPLKELIQLHAGDVIGGWDNLLAIIPGGSSTPLIPKDVCEE 344

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AIMD+DGL  + + LGTAAVIVM++ TDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 345 AIMDFDGLVAVQTSLGTAAVIVMNKQTDIVKAIARLIEFYKHESCGQCTPCREGINWMNK 404

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R + G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP +E R++   
Sbjct: 405 IIHRFITGNAEPGEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMENKQ 464


>gi|329114683|ref|ZP_08243442.1| NADH-quinone oxidoreductase chain 1 [Acetobacter pomorum DM001]
 gi|326696163|gb|EGE47845.1| NADH-quinone oxidoreductase chain 1 [Acetobacter pomorum DM001]
          Length = 442

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 292/421 (69%), Positives = 337/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L  +  RG WDN   I+ KGRD +I E+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNLYGQDDWRLPAARKRGDWDNTAAIIAKGRDAVIAEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+N DESEPGTCKDR++MRHEPH LIE  +IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKKSDGRPHYLVINGDESEPGTCKDREVMRHEPHKLIESAMIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGEF RE E LQAA+DE Y +GLLG N+   G+D D  +H GAGAYICGEETALL
Sbjct: 121 SYIYIRGEFCREAERLQAAIDEAYEAGLLGKNAAGTGWDFDFRIHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR+KPPFPA  GLYGCPTTVNNVESIAV  TI+RRGA+W+SG GR NN GT
Sbjct: 181 ESLEGKKGQPRMKPPFPAGAGLYGCPTTVNNVESIAVTSTIMRRGAAWFSGLGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +ISGHVN PC  EE + ++  E+IEKH GG+RGGWDNLLAVIPGG SVP LP     
Sbjct: 241 KLMAISGHVNTPCVFEEELGVSLKEIIEKHGGGVRGGWDNLLAVIPGGCSVPVLPKSICE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+   SGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM
Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDIIEAIARFSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M R+V+G A+  EIDLL +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI QY
Sbjct: 361 RMMNRMVQGKAEIEEIDLLEQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMEARIRQY 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|51230625|ref|NP_001003747.1| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
           precursor [Danio rerio]
 gi|50925098|gb|AAH78648.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Danio rerio]
 gi|94733524|emb|CAK04074.1| novel protein (zgc:86620) [Danio rerio]
          Length = 492

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 276/421 (65%), Positives = 334/421 (79%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL+KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 66  LADQDRIFTNLYGRHDWRLKGALRRGDWYKTKEILDKGVDWILNEIKTSGLRGRGGAGFP 125

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMR++PH LIEGC++A  A+GA  A
Sbjct: 126 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLIEGCLVAGRAMGARAA 185

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A++E YA+GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 186 YIYIRGEFYNESSNLQVAINEAYAAGLIGKNACGSGYDFDVFVMRGAGAYICGEETALIE 245

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 246 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFAGFGRERNSGTK 305

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+RGGWDNLL VIPGGSS P +P      
Sbjct: 306 LFNISGHVNNPCTVEEEMSIPLKELIERHAGGVRGGWDNLLCVIPGGSSTPLIPQHVCDT 365

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  +GLGTAA+IVMD+STD+I+AI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 366 VLMDFDALIQAQTGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNK 425

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG A+  EID+++E+SK IEG TICALGD AAWP+QGLI++FRPL+E RI  + 
Sbjct: 426 MMWRFVKGDARSAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPLMESRIADFQ 485

Query: 421 R 421
           +
Sbjct: 486 Q 486


>gi|321258005|ref|XP_003193778.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Cryptococcus gattii
           WM276]
 gi|317460248|gb|ADV21991.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, putative
           [Cryptococcus gattii WM276]
          Length = 495

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 266/423 (62%), Positives = 329/423 (77%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNL+      +  +++RG W     I+ KG  WII  VK SGLRGRGGAGF 
Sbjct: 36  LKDQDRIFTNLFCKHDHGIKGALARGDWHKTKDIILKGDAWIIQTVKDSGLRGRGGAGFP 95

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K   +   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 96  SGLKWSFMNKPGWEKDPRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 155

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF +E   +Q A+DE Y +GL+G N+   GYD D+ +H GAGAYICGEETA
Sbjct: 156 NAAYIYIRGEFYQEASHVQQAIDEAYKAGLIGKNACGSGYDFDVYLHRGAGAYICGEETA 215

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N 
Sbjct: 216 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTIARRGGSWFASFGRERNS 275

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK++ +SGHVN PC VEE MSI   EL+EKHCGG+RGGW NL  ++PGGSSVP +    
Sbjct: 276 GTKVYCVSGHVNNPCVVEEEMSIPLQELLEKHCGGVRGGWQNLKGIVPGGSSVPVITRET 335

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK+ G+ LGT AVIVMD +TD+I AI R S FYKHESCGQCTPCREGT W
Sbjct: 336 SEKCLMDYDSLKDNGTSLGTGAVIVMDNTTDMIAAIARFSKFYKHESCGQCTPCREGTSW 395

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM +M+R+V+G AQ+REID+L E++K +EG TICALGDAAAWPIQGL+KNFRP +E+R+ 
Sbjct: 396 MMNMMDRMVEGRAQEREIDMLLELTKQVEGHTICALGDAAAWPIQGLMKNFRPEVEQRLA 455

Query: 418 QYH 420
           Q+H
Sbjct: 456 QFH 458


>gi|266651|sp|P29913|NQO1_PARDE RecName: Full=NADH-quinone oxidoreductase chain 1; AltName:
           Full=NADH dehydrogenase I, chain 1; AltName: Full=NDH-1,
           chain 1
 gi|150598|gb|AAA25585.1| NADH dehydrogenase [Paracoccus denitrificans]
          Length = 431

 Score =  536 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 306/418 (73%), Positives = 354/418 (84%), Gaps = 1/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL+ +  RGHWD    I+++GRD II+E+KASGLRGRGGAGF
Sbjct: 1   MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +IASFA+GAH 
Sbjct: 61  PTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFIRERE+LQAA+DECY +GLLG N+   G+D D+ +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRGA W++ FGR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ++GHVN PC VEE+MSI   ELIEKH GGIRGGW NL AVIPGG+S P L A Q  
Sbjct: 241 KLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMDYDG++++ S  GTA +IVMD+STD++KAIWRLS F+KHESCGQCTPCREGTGWMM
Sbjct: 301 NAIMDYDGMRDVRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVMERLV+G A+  EID+L++V+K +EG TICALGDAAAWPIQGLI+NFR  IE+RI 
Sbjct: 361 RVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIK 418


>gi|242001646|ref|XP_002435466.1| NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit, putative
           [Ixodes scapularis]
 gi|215498802|gb|EEC08296.1| NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit, putative
           [Ixodes scapularis]
          Length = 477

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 271/420 (64%), Positives = 328/420 (78%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIF NLYG     L  +MSRG W    +I+ KG DWII+E+K SGLRGRGGAGF 
Sbjct: 48  LSDEDRIFQNLYGRHDWRLKGAMSRGDWYKTKEIVLKGADWIIDEIKKSGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTL+EGC++A  A+GA  A
Sbjct: 108 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLVEGCLVAGRAMGARAA 167

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +G LG N+   GYD D+ VH GAGAYICGEETAL+E
Sbjct: 168 YIYIRGEFYNEASNLQIAIREAYQAGYLGKNACGSGYDFDVFVHRGAGAYICGEETALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG  W++ FGR  N GTK
Sbjct: 228 SIEGKQGKPRLKPPFPADVGVFGCPTTVTNVETVAVSPTICRRGGEWFASFGRTRNSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 288 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGVIGGWDNLLGVIPGGSSTPVIPKSVCDD 347

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAAVIVM++ TD+I+AI RL  FYKHESCGQCTPCREG GW+ +
Sbjct: 348 VLMDFDALVAAQTGLGTAAVIVMNKQTDMIRAIARLLEFYKHESCGQCTPCREGVGWLHK 407

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G A+  EID++YE+SK IEG TICALGD AAWP+QGL+++FRPL+EERI Q+ 
Sbjct: 408 MMGRFVSGNARVDEIDMVYELSKQIEGHTICALGDGAAWPVQGLVRHFRPLMEERIRQFQ 467


>gi|46202357|ref|ZP_00208485.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
           subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 427

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 295/421 (70%), Positives = 335/421 (79%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTNLYG     L  + SRG WDN   IL+KGRDWII E+K SGLRGRGGAGF
Sbjct: 1   MLRDSDRIFTNLYGFHDWRLKGAQSRGDWDNTKAILDKGRDWIIEEMKNSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+NADE EPGTCKDR++MR +PH LIEG +IA FAIGAH 
Sbjct: 61  PTGVKWSFMPKTEGPRPHYLVINADEGEPGTCKDREMMRFDPHKLIEGALIACFAIGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF+ E E L  A+ E  A+GLLG N+   G+D ++ VH GAGAYICGEE+AL+
Sbjct: 121 AYIYIRGEFVLEAEHLNTAIAEARAAGLLGPNACGSGWDCEVYVHRGAGAYICGEESALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAV PTILRRGA+W+SG G+ NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVAPTILRRGAAWFSGLGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE M I   +LIEKH GG+RGGWDNLLA+IPGGSSVP L   Q  
Sbjct: 241 KVFCISGHVNTPCNVEEEMGIPLKDLIEKHAGGVRGGWDNLLAIIPGGSSVPMLNKQQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ M SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 301 EVTMDFDALRAMRSGLGTAAVIVMDKSTDLVRAIHRLSRFYWHESCGQCTPCREGTGWMS 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M R+V G A+  EIDLL EVS+ IEG TICALGDAAAWPIQGLI+ FRP +E RI + 
Sbjct: 361 RMMGRMVTGDAELSEIDLLEEVSRQIEGHTICALGDAAAWPIQGLIRTFRPEMERRIKER 420

Query: 420 H 420
            
Sbjct: 421 Q 421


>gi|209885057|ref|YP_002288914.1| f subunit of NADH oxidoreductase (quinone) [Oligotropha
           carboxidovorans OM5]
 gi|209873253|gb|ACI93049.1| f subunit of NADH oxidoreductase (quinone) [Oligotropha
           carboxidovorans OM5]
          Length = 441

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 301/422 (71%), Positives = 348/422 (82%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYGL    L+ +  RG WD    I+EKGRDWI++E+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFKNLYGLDDWGLAGARRRGAWDGTKSIIEKGRDWIVSEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GAH
Sbjct: 61  PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHLLVEGCLLASFAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+IYVRGEFIRERE LQAAVD+ Y + L+G ++  G+  D+ V HGAGAYICGEETALL
Sbjct: 121 AAYIYVRGEFIREREHLQAAVDQAYEAKLIGKDNVHGWPFDLYVTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VE+++ ITF ELI+KH GG+RGGWDNLLAVIPGG+S P +PA   +
Sbjct: 241 KLFGISGHVNTPCVVEDALGITFRELIDKHAGGVRGGWDNLLAVIPGGASCPLIPAADCQ 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S LGTA  IVMD+STD+I AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 DLIMDFDGTRAVKSSLGTAGAIVMDKSTDVIAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLTRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 TR 422


>gi|170578164|ref|XP_001894295.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Brugia malayi]
 gi|158599191|gb|EDP36876.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor, putative [Brugia malayi]
          Length = 481

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 268/423 (63%), Positives = 321/423 (75%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M  G W    ++L KG+DWII E+ ASG+RGRGGAGF 
Sbjct: 46  LKDEDRIFTNLYGRYDFRLKSAMKLGDWYKTKEVLLKGQDWIIKEMSASGMRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM +    RP YL +NADE EPGTCKDR+++RH PH LIEG +IA +A+GA  A
Sbjct: 106 TGIKWSFMKRPFDGRPKYLCINADEGEPGTCKDREVIRHHPHKLIEGALIAGYAMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A+ E Y +G +G NS   GY  D+ VH GAGAYICGEETAL+E
Sbjct: 166 YIYIRGEFYNEACILQEAIHEAYKAGFIGKNSCDTGYSFDVFVHRGAGAYICGEETALIE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTVNN+E+IA  P I +RGA WYS FGRE N GTK
Sbjct: 226 SIEGKQGKPRLKPPFPADIGLFGCPTTVNNIETIASAPAICKRGAKWYSSFGRERNHGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHV  PCTVEE MSI   ELIE+HCGG+ GGWDNL+A+IPGGSSVP +P      
Sbjct: 286 LYCISGHVVNPCTVEEEMSIPLKELIERHCGGVIGGWDNLMAIIPGGSSVPMIPKDICET 345

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD L  + +GLGTAAVIVM++  DI+K I RLS FY+HESCGQCTPCREGT W+  
Sbjct: 346 VLMDYDALVAVQTGLGTAAVIVMNKEVDIVKCIARLSHFYRHESCGQCTPCREGTKWLNS 405

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R VKG A+  EID L+E+SK IE  TICALGDAAAWP+QGLI++FRP IE RI +Y 
Sbjct: 406 VMWRFVKGQAKSSEIDSLWEISKQIEAHTICALGDAAAWPVQGLIRHFRPEIEHRISEYQ 465

Query: 421 RCN 423
             N
Sbjct: 466 AKN 468


>gi|167523547|ref|XP_001746110.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775381|gb|EDQ89005.1| predicted protein [Monosiga brevicollis MX1]
          Length = 463

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 274/421 (65%), Positives = 326/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  ++ RG W     I+E G D+I++EVK SGLRGRGGAGF 
Sbjct: 31  LADDDRVFQNLYGRHDWGLKGALKRGTWYKTKNIVEAGSDFILDEVKKSGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTL+EGC++A  A+GA  A
Sbjct: 91  SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLLEGCLVAGRAMGAQAA 150

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF +E  +LQ A++E Y  GL+G N+   GYD DI +  GAGAYICGEETAL+E
Sbjct: 151 YIYIRGEFFQEASNLQVAINEAYDKGLIGKNACGSGYDFDIFLFRGAGAYICGEETALIE 210

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG  W++ FGRE N GTK
Sbjct: 211 SIEGKTGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGGDWFASFGRERNSGTK 270

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG+VN PC VEE MSI+  EL+EKHCGG+ GGWDNLL VIPGGSSVP LP      
Sbjct: 271 LFAISGNVNKPCVVEEEMSISLRELLEKHCGGVTGGWDNLLGVIPGGSSVPVLPKHICDD 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVMD+S DII  I RLS FY HESCGQCTPCREGT W+ +
Sbjct: 331 VMMDFDALVAEKSGLGTAAVIVMDKSQDIIDCIARLSDFYVHESCGQCTPCREGTTWLSK 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R V G A K EID+LYE+++ IEG TICALGDAAAWP+QGLI++FRP IE RID Y+
Sbjct: 391 VMRRFVSGDADKEEIDMLYELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIEARIDAYN 450

Query: 421 R 421
           +
Sbjct: 451 Q 451


>gi|294677060|ref|YP_003577675.1| NADH-quinone oxidoreductase subunit F [Rhodobacter capsulatus SB
           1003]
 gi|7387959|sp|O07948|NUOF_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|1938240|emb|CAA71232.1| complex I 51kDa subunit [Rhodobacter capsulatus]
 gi|2182080|emb|CAA71013.1| NADH:ubiquinone oxidoreductase 47 kD complex I subunit [Rhodobacter
           capsulatus]
 gi|3282565|gb|AAC24991.1| NUOF [Rhodobacter capsulatus]
 gi|294475880|gb|ADE85268.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter capsulatus SB
           1003]
          Length = 431

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 295/421 (70%), Positives = 346/421 (82%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIFTN+YG+  +SL  +M+RGHWD    IL  GRDWII +VKASGLRGRGGAGF
Sbjct: 1   MLNDHDRIFTNIYGMHDRSLKGAMARGHWDGTAAILGNGRDWIIEQVKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP +LV+NADESEPGTCKDR+IMRH+PHTLIEG +IA FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPSFLVINADESEPGTCKDREIMRHDPHTLIEGALIAGFAMGARA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE++RE+E+LQAA+DECY +GL+G N+ +  YD D+ +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEYVREKEALQAAIDECYEAGLIGKNACRSDYDFDVYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAVVPTILRRG +W++G GR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGGAWFAGIGRPNNTGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC VEE+MSI+  ELIEKH GG+RGGW NL AVIPGG+S P +PA    
Sbjct: 241 KLFAMSGHVNTPCVVEEAMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPVIPAHLCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            AIMDYDG++E  S  GTA +IVMD+ TDIIKAI RLS F+KHESCGQCTPCREGT WM 
Sbjct: 301 DAIMDYDGMREKQSSFGTACLIVMDQQTDIIKAIARLSKFFKHESCGQCTPCREGTSWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMERLV G A+  EID+L+ V+K +EG TICALGDAAAWPIQGLI+++R  IE+RI   
Sbjct: 361 RVMERLVTGEAEVEEIDMLFSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIKAR 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|258542717|ref|YP_003188150.1| NADH dehydrogenase I subunit F [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633795|dbj|BAH99770.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636854|dbj|BAI02823.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639907|dbj|BAI05869.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642963|dbj|BAI08918.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646018|dbj|BAI11966.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649071|dbj|BAI15012.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652058|dbj|BAI17992.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655115|dbj|BAI21042.1| NADH-quinone oxidoreductase chain F [Acetobacter pasteurianus IFO
           3283-12]
          Length = 442

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 290/421 (68%), Positives = 336/421 (79%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L  +  RG W+N   I+ KGRD ++ E+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNLYGQDDWRLPAARKRGDWENTAAIIAKGRDAVVAEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+N DESEPGTCKDR++MRHEPH LIE  +IASFA+GAH 
Sbjct: 61  PTGLKWSFMPKKSDGRPHYLVINGDESEPGTCKDREVMRHEPHKLIESAMIASFAMGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGEF RE E LQAA+DE Y +GLLG N+   G+D D  +H GAGAYICGEETALL
Sbjct: 121 SYIYIRGEFCREAERLQAAIDEAYEAGLLGKNAAGSGWDFDFRIHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR+KPPFPA  GLYGCPTTVNNVESIAV  TI+RRGA+W+SG GR NN GT
Sbjct: 181 ESLEGKKGQPRMKPPFPAGAGLYGCPTTVNNVESIAVTSTIMRRGAAWFSGLGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +ISGHVN PC  EE + +   E+IEKH GG+RGGWDNLLAVIPGG SVP LP     
Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLKEIIEKHGGGVRGGWDNLLAVIPGGCSVPVLPKSICE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+   SGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM
Sbjct: 301 TVLMDYDSLRAERSGLGTACMIVMDKSTDIIEAIARFSKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M R+V+G A+  EIDLL +V+K +EG TICALGDAAAWPIQGLI++FRP +E RI QY
Sbjct: 361 RMMNRMVQGTAEIEEIDLLEQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEMEARIRQY 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|296444799|ref|ZP_06886762.1| NADH-quinone oxidoreductase, F subunit [Methylosinus trichosporium
           OB3b]
 gi|296257747|gb|EFH04811.1| NADH-quinone oxidoreductase, F subunit [Methylosinus trichosporium
           OB3b]
          Length = 434

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 305/424 (71%), Positives = 350/424 (82%), Gaps = 1/424 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG   + L+ +  RG WDN   +L  GRD II EVK SGLRGRGGAGF
Sbjct: 1   MLADKDRIFTNLYGYGDRGLAGARKRGQWDNTKALLALGRDKIIQEVKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK        YLV+NADESEPGTCKDR+IMR++PHTL+EG ++ASFA+GAH
Sbjct: 61  STGLKWSFMPKTPDPARPSYLVINADESEPGTCKDREIMRNDPHTLVEGAMVASFAMGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFI ER +LQ AVDE YA+ L+G ++  GY  D+ VHHGAGAYICGEETAL+
Sbjct: 121 ACYIYVRGEFIAERVALQRAVDEAYAARLIGKDNVHGYPFDLYVHHGAGAYICGEETALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 181 ESLEGKKGMPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWFAGIGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLFSISGHVN PC VEE+MSI F ELI++HCGG+RGG DNLLAVIPGGSSV  +PA Q+ 
Sbjct: 241 KLFSISGHVNKPCNVEEAMSIPFRELIDRHCGGVRGGSDNLLAVIPGGSSVRLVPADQII 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L ++GSGLGTAAVIVMD+STDII+AI RL+ FYKHESCGQCTPCREGTGWM 
Sbjct: 301 DCPMDFDSLVKLGSGLGTAAVIVMDKSTDIIRAIARLAYFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+ +G A KREID+L++VSK IEG TICALGDAAAWPIQGLI +FR  IE RID+Y
Sbjct: 361 RVVTRMAEGRAHKREIDMLFDVSKQIEGHTICALGDAAAWPIQGLINHFRGEIERRIDRY 420

Query: 420 HRCN 423
               
Sbjct: 421 AANP 424


>gi|115647097|ref|XP_001178525.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1
           (ndufv1) isoform 1 [Strongylocentrotus purpuratus]
 gi|115924266|ref|XP_001178444.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1
           (ndufv1) isoform 2 [Strongylocentrotus purpuratus]
          Length = 471

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 268/421 (63%), Positives = 327/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M+RG W    +IL KG DWI+ E++ SGLRGRGGAGF 
Sbjct: 42  LKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEILLKGHDWILKEIRDSGLRGRGGAGFP 101

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+GA  A
Sbjct: 102 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 161

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   GYD D+ +H GAGAYICGEETA++E
Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGYLGKNACGSGYDFDVYMHRGAGAYICGEETAVIE 221

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRGA W++GFGRE N+GTK
Sbjct: 222 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPIICRRGAPWFAGFGRERNQGTK 281

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG+VN PCTVEESMSI    LIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 282 LFNISGNVNTPCTVEESMSIPLKVLIEKHAGGVEGGWDNLLAVIPGGSSTPMIPKDVCDD 341

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAAVIVM++  D+I+ I RL  FY+HESCGQCTPCREGTGWM +
Sbjct: 342 VLMDFDALVAAQTGLGTAAVIVMNKQADVIRCIARLMEFYQHESCGQCTPCREGTGWMTK 401

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  R V+G A+  EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R+ ++H
Sbjct: 402 ITNRFVEGNAKPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMKKFH 461

Query: 421 R 421
            
Sbjct: 462 E 462


>gi|148259937|ref|YP_001234064.1| NADH dehydrogenase I subunit F [Acidiphilium cryptum JF-5]
 gi|326403109|ref|YP_004283190.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum
           AIU301]
 gi|146401618|gb|ABQ30145.1| NADH dehydrogenase subunit F [Acidiphilium cryptum JF-5]
 gi|325049970|dbj|BAJ80308.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum
           AIU301]
          Length = 431

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 285/421 (67%), Positives = 339/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+D+DRI+TNLYGL    L+ + +RG WD    IL +GRD II E+K+SGLRGRGGAGF
Sbjct: 1   MLSDRDRIYTNLYGLHDWRLAGARARGDWDGTKDILARGRDAIIEEIKSSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RP YLV+NADESEPGTCKDRDI+RHEPH L+EG +IA FA+GAH 
Sbjct: 61  PTGMKWSFMPKETDGRPSYLVINADESEPGTCKDRDILRHEPHKLVEGALIAGFAMGAHR 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           AFIYVRGE+  E ++LQAAVDE   +GLLG ++   G+  DI VH GAGAYICGEE+AL+
Sbjct: 121 AFIYVRGEYYNEYKNLQAAVDEAREAGLLGDDACGSGWAFDITVHRGAGAYICGEESALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA +GLYGCPTTVNNVE+IA V TI+RRGA+W+S  GR  N GT
Sbjct: 181 ESIEGKKGLPRMKPPFPAALGLYGCPTTVNNVETIAGVATIMRRGAAWFSALGRPKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEKH GG+RGGWDNL AVIPGGSSV  +P     
Sbjct: 241 KIFCISGHVNRPCNVEEELGIPLRELIEKHAGGVRGGWDNLQAVIPGGSSVHMIPKSVCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+E  +GLGTAAVIVMD+STD+I+AI RL+ FYKHESCGQCTPCREGTGWMM
Sbjct: 301 TVLMDYDSLREQRTGLGTAAVIVMDKSTDLIRAIARLAAFYKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M RLV+G A+  +IDLL +V+K +EG TIC LGDAAAWPIQGL+++FRP++E+RI  Y
Sbjct: 361 RMMYRLVEGRAEIADIDLLEQVTKQVEGHTICPLGDAAAWPIQGLLRHFRPVVEQRIADY 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|146278038|ref|YP_001168197.1| NADH dehydrogenase I subunit F [Rhodobacter sphaeroides ATCC 17025]
 gi|145556279|gb|ABP70892.1| NADH-quinone oxidoreductase, F subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 431

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 292/421 (69%), Positives = 347/421 (82%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+  +SL  +M+RG WD    +L  GRD II+ VK SGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNLYGMGDRSLKGAMARGQWDGTADLLALGRDRIIDIVKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEP TCKDR+IMRH+PHTLIEG +++ FA+GA  
Sbjct: 61  PTGLKWSFMPKQSDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALLSGFAMGAVA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGE+IRE+E+LQAA+DE Y +GL+G N+ K GYD DI +HHGAGAYICGEETALL
Sbjct: 121 AYIYIRGEYIREKEALQAAIDEAYDAGLIGRNAAKSGYDFDIYLHHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAV+P ILRRG  W++GFGR NN G 
Sbjct: 181 ESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVIPAILRRGGEWFAGFGRPNNAGV 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF++SGHVN PC +EESMSI+  ELIEKH GG+RGGW NL AVIPGG+S P +PA Q  
Sbjct: 241 KLFAMSGHVNTPCVIEESMSISMKELIEKHGGGVRGGWKNLKAVIPGGASCPIIPAEQCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MDYDG++E+ S  GTA +IVMD+ TD+IKA+WRL+ F+KHESCGQCTPCREGTGWMM
Sbjct: 301 DAVMDYDGMRELKSSFGTACMIVMDQQTDVIKAVWRLAKFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+RLV+G A+  EID+L  V+K +EG TICALGDAAAWPIQGLI+++R  IE+RI   
Sbjct: 361 RVMDRLVRGEAEVEEIDMLLSVTKQVEGHTICALGDAAAWPIQGLIRHYREEIEDRIKAK 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|72087543|ref|XP_791098.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1
           (ndufv1) isoform 2 [Strongylocentrotus purpuratus]
 gi|115924268|ref|XP_001178353.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase flavoprotein 1
           (ndufv1) isoform 1 [Strongylocentrotus purpuratus]
          Length = 471

 Score =  535 bits (1379), Expect = e-150,   Method: Composition-based stats.
 Identities = 268/421 (63%), Positives = 327/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M+RG W    +IL KG DWI+ E++ SGLRGRGGAGF 
Sbjct: 42  LKDEDRIFTNLYGRHDWKLKGAMARGDWYKTKEILLKGHDWILKEIRDSGLRGRGGAGFP 101

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+GA  A
Sbjct: 102 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 161

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   GYD D+ +H GAGAYICGEETA++E
Sbjct: 162 YIYIRGEFYNEASNMQLAIKEAYEAGYLGKNACGSGYDFDVYMHRGAGAYICGEETAVIE 221

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV P I RRGA W++GFGRE N+GTK
Sbjct: 222 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPIICRRGAPWFAGFGRERNQGTK 281

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG+VN PCTVEESMSI    LIEKH GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 282 LFNISGNVNTPCTVEESMSIPLKVLIEKHAGGVEGGWDNLLAVIPGGSSTPMIPKDVCDD 341

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAAVIVM++  D+I+ I RL  FY+HESCGQCTPCREGTGWM +
Sbjct: 342 VLMDFDALVAAQTGLGTAAVIVMNKQADVIRCIARLMEFYQHESCGQCTPCREGTGWMTK 401

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  R V+G A+  EID+LYE+SK IEG TICALGD AAWP+QGLI++FRP +E R+ ++H
Sbjct: 402 ITNRFVEGNAKPDEIDMLYELSKQIEGHTICALGDGAAWPVQGLIRHFRPELEARMKKFH 461

Query: 421 R 421
            
Sbjct: 462 E 462


>gi|34328784|gb|AAQ63696.1| NADH:ubiquinone oxidoreductase 51 kD subunit [Chlamydomonas
           reinhardtii]
          Length = 484

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 283/417 (67%), Positives = 337/417 (80%), Gaps = 1/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIF N+YG    S+  +MSRG W    +I+ KGRDWII+++K SGLRGRGGAGF 
Sbjct: 56  LKDEDRIFQNIYGRHDLSIKGAMSRGDWYMTKEIIGKGRDWIIDQMKKSGLRGRGGAGFP 115

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC++A  A+GA   
Sbjct: 116 SGLKWSFMPKASDSRPIYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLMAGVAMGARAG 175

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF++ER +++ A+ E YA G LG N+   G D D++VH+GAGAYICGEETAL+E
Sbjct: 176 YIYIRGEFVQERRAVERAISEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETALIE 235

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 236 SLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 295

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN P TVEE MSI   ELIE+H GG+RGGWDNLLA+IPGGSSVP LP     G
Sbjct: 296 LFCISGHVNRPVTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLPKKICDG 355

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LKE  SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 356 VLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWLYD 415

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +M R+ KG A+  EID+L+E++K IEG TICALGDAAAWP+QGLI++FR  +EERI 
Sbjct: 416 IMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRGEMEERIK 472


>gi|296808193|ref|XP_002844435.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Arthroderma otae CBS
           113480]
 gi|238843918|gb|EEQ33580.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Arthroderma otae CBS
           113480]
          Length = 534

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 273/421 (64%), Positives = 329/421 (78%), Gaps = 4/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DWII+EVK SGLRGRGGAGF 
Sbjct: 84  LKDQDRIFQNLYGRHPPDLKHAMKSGDWYKTKEIILKGHDWIISEVKTSGLRGRGGAGFP 143

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC+I+  A+ A
Sbjct: 144 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 203

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 204 TAAYIYIRGEFYEEATVLQQAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 263

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++GFGRE N+
Sbjct: 264 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 323

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 324 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 383

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 384 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 443

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 444 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 503

Query: 418 Q 418
           Q
Sbjct: 504 Q 504


>gi|300023448|ref|YP_003756059.1| NADH-quinone oxidoreductase, F subunit [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525269|gb|ADJ23738.1| NADH-quinone oxidoreductase, F subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 428

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 299/420 (71%), Positives = 349/420 (83%), Gaps = 1/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYG     L  ++SRG WD     ++KG D+II+EVK SGLRGRGGAGF
Sbjct: 1   MLHDRDRIFRNLYGFHDARLKGAISRGAWDGTKFFIDKGHDYIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLV+NADESEPG+CKDR+IMRH+PH LIEG ++A+FA+ AH 
Sbjct: 61  PTGLKWSFMPKAD-HRPSYLVINADESEPGSCKDREIMRHDPHLLIEGALLAAFAMRAHT 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           ++IYVRGE+IRERE+LQ A+DE YA+ L+G N+  G+D D+ VHHGAGAYICGEETA+LE
Sbjct: 120 SYIYVRGEYIREREALQRAIDEAYAAKLIGKNNVHGWDFDLYVHHGAGAYICGEETAMLE 179

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGKKGQPRLKPPFPANVGLYG PTT+NNVESIAV   ILRRGA+W++  G  NN GTK
Sbjct: 180 SIEGKKGQPRLKPPFPANVGLYGAPTTINNVESIAVTGEILRRGANWFAALGLPNNTGTK 239

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PCTVEE M I   ELI+KHCGGIRGGWDNLLAVIPGGSSV C+ A Q   
Sbjct: 240 LFQISGHVERPCTVEEEMGIPLKELIDKHCGGIRGGWDNLLAVIPGGSSVRCITAEQAMN 299

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L ++GSGLGTAA+IVMD+STDII AI R++ FYKHESCGQCTPCREGTGWM R
Sbjct: 300 VTMDFDALGKLGSGLGTAAIIVMDKSTDIIGAIRRIAYFYKHESCGQCTPCREGTGWMWR 359

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ER+ +G A+KREIDLL++V+K IEG TICALGDAAAWP+QGLIKNFRP+IEERIDQY 
Sbjct: 360 VLERMERGQAEKREIDLLFDVTKQIEGHTICALGDAAAWPVQGLIKNFRPVIEERIDQYQ 419


>gi|16126190|ref|NP_420754.1| NADH dehydrogenase I subunit F [Caulobacter crescentus CB15]
 gi|221234961|ref|YP_002517397.1| NADH dehydrogenase I subunit F [Caulobacter crescentus NA1000]
 gi|13423406|gb|AAK23922.1| NADH dehydrogenase I, F subunit [Caulobacter crescentus CB15]
 gi|220964133|gb|ACL95489.1| NADH-quinone oxidoreductase chain F [Caulobacter crescentus NA1000]
          Length = 439

 Score =  535 bits (1378), Expect = e-150,   Method: Composition-based stats.
 Identities = 294/421 (69%), Positives = 339/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYGL    L  +  RG W+    IL+ GRDWII  +K SGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGLHDWGLEGAKKRGCWNGTKDILDAGRDWIIENMKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK   D RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH
Sbjct: 64  STGLKWSFMPKEVKDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAH 123

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGE++ ERE L+AA+ + Y + L+G N+  G+D DI VHHGAGAYICGEETALL
Sbjct: 124 ACYIYIRGEYVFERERLEAAIKQAYEAKLVGKNNVHGWDFDIYVHHGAGAYICGEETALL 183

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYG PTTVNNVESIAV  TILRRGA+W++GFGR NN GT
Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNAGT 243

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGHVN PC VEE+MSI F +L+E HCGGIRGGW NL AVIPGGSSVP +PA Q  
Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLVEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ + SGLGTAAVIVMD+ TD+++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 304 DLPMDFDALRNLKSGLGTAAVIVMDKDTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+V G A  +EID L +V+  +EG TICALGDAAAWPIQGL ++FR  +EERI  Y
Sbjct: 364 RVMERMVTGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEERIASY 423

Query: 420 H 420
            
Sbjct: 424 R 424


>gi|302658280|ref|XP_003020846.1| hypothetical protein TRV_05072 [Trichophyton verrucosum HKI 0517]
 gi|291184712|gb|EFE40228.1| hypothetical protein TRV_05072 [Trichophyton verrucosum HKI 0517]
          Length = 595

 Score =  534 bits (1377), Expect = e-150,   Method: Composition-based stats.
 Identities = 272/426 (63%), Positives = 331/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DWII+E+K SGLRGRGGAGF 
Sbjct: 145 LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIISEIKTSGLRGRGGAGFP 204

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++  A+ A
Sbjct: 205 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 265 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++GFGRE N+
Sbjct: 325 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 385 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 444

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 445 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 504

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 505 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEGRIR 564

Query: 418 QYHRCN 423
           Q  + N
Sbjct: 565 QNAQAN 570


>gi|258567288|ref|XP_002584388.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Uncinocarpus reesii
           1704]
 gi|237905834|gb|EEP80235.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Uncinocarpus reesii
           1704]
          Length = 532

 Score =  534 bits (1377), Expect = e-150,   Method: Composition-based stats.
 Identities = 270/422 (63%), Positives = 331/422 (78%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIF NLYG  G  L ++M  G W    +IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 82  LKDRDRIFQNLYGRHGPDLKNAMKTGDWYKTKEILLKGHDWIISEIKASGLRGRGGAGFP 141

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D   RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 142 SGLKWSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 201

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEET+
Sbjct: 202 TAAYIYIRGEFYEEATVLQRAINEAYEAGLIGKNACGSGYDFDIYIHRGMGAYICGEETS 261

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 262 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 321

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 322 GTKLYCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKHV 381

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 382 CDDQIMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGSKW 441

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG +ICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 442 TMQIMQRFERGQAREREIDMLQELTKQVEGHSICALGEAFAWPIQGLIRHFRPELEARIQ 501

Query: 418 QY 419
           ++
Sbjct: 502 KF 503


>gi|170112662|ref|XP_001887532.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164637434|gb|EDR01719.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 501

 Score =  534 bits (1377), Expect = e-150,   Method: Composition-based stats.
 Identities = 267/426 (62%), Positives = 327/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN Y      +  ++SRG W     I+ KG  WII ++K SGLRGRGGAGF 
Sbjct: 41  LKDQDRIFTNAYCRHDHGIKGALSRGDWHRTKDIILKGDAWIIQQIKDSGLRGRGGAGFP 100

Query: 62  TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K       RP YLV+NADE EPGTCKDR+I+R +PH LIEGC++A  ++ A
Sbjct: 101 SGLKWSFMNKPGWQNDPRPRYLVINADEGEPGTCKDREILRGDPHKLIEGCLVAGRSMNA 160

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF +E   +Q A+ E Y +GLLG N+   GY  D+ VH GAGAYICGEETA
Sbjct: 161 TAAYIYIRGEFYQEASHVQQAIHEAYTAGLLGPNACGSGYAFDVYVHRGAGAYICGEETA 220

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRGASW++GFGRE N+
Sbjct: 221 LIESIEGKQGKPRLKPPFPADVGLFGCPTTVANVETVAVAPTICRRGASWFAGFGRERNQ 280

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PC VEE MSI   +LIEKHCGG+ GGWDNLL ++PGGSSVP +P   
Sbjct: 281 GTKLYCISGHVNNPCVVEEEMSIPLKDLIEKHCGGVVGGWDNLLGIVPGGSSVPVIPKDV 340

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK+  +GLGT AVIVM++STDI+ AI R S FYKHESCGQCTPCREGT W
Sbjct: 341 CAEVLMDYDSLKDAQTGLGTGAVIVMNKSTDIVAAIARFSQFYKHESCGQCTPCREGTTW 400

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM +M R+V+G    REID+L E++K +EGRTICALGDAAAWPIQGL+++FRP +E RI 
Sbjct: 401 MMNMMNRMVEGRGHLREIDMLLELTKQVEGRTICALGDAAAWPIQGLMRHFRPEVERRIQ 460

Query: 418 QYHRCN 423
           ++   N
Sbjct: 461 EFRAVN 466


>gi|312221816|emb|CBY01756.1| similar to NADH-ubiquinone oxidoreductase 51 kDa subunit
           [Leptosphaeria maculans]
          Length = 508

 Score =  534 bits (1377), Expect = e-150,   Method: Composition-based stats.
 Identities = 265/422 (62%), Positives = 324/422 (76%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W    +IL KG DWII+E+K SGLRGRGGAGF 
Sbjct: 59  LKDQDRIFQNLYGHHGADLKSAMKYGDWHKTKEILLKGHDWIISEIKTSGLRGRGGAGFP 118

Query: 62  TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM        D+P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 119 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 178

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   L+ A+ E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 179 TAAYIYIRGEFYHEAAVLERAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETS 238

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++ FGRE N+
Sbjct: 239 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFASFGRERNQ 298

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL++ISGHVN PC VEE MSI   ELI+KHCGG+RGGWDNL AVIPGGSS P LP   
Sbjct: 299 GTKLYAISGHVNKPCVVEEEMSIPLRELIDKHCGGVRGGWDNLKAVIPGGSSTPILPKHI 358

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W
Sbjct: 359 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 418

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI 
Sbjct: 419 THQIMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIK 478

Query: 418 QY 419
            Y
Sbjct: 479 DY 480


>gi|289615344|emb|CBI57930.1| unnamed protein product [Sordaria macrospora]
          Length = 493

 Score =  534 bits (1376), Expect = e-150,   Method: Composition-based stats.
 Identities = 271/426 (63%), Positives = 330/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +IL KG DWII EVKASGLRGRGGAGF 
Sbjct: 44  LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 104 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 163

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI E   LQ A++E YA GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 164 TAAYIYIRGEFIHEAAVLQNAINEAYADGLIGKNACGSGYDFDVYIHRGAGAYVCGEETS 223

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++ FGRE N+
Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFASFGRERNQ 283

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 284 GTKLYCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 344 CDDQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 463

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 464 KFAQEN 469


>gi|261199832|ref|XP_002626317.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis SLH14081]
 gi|239594525|gb|EEQ77106.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis SLH14081]
 gi|239607916|gb|EEQ84903.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis ER-3]
 gi|327357999|gb|EGE86856.1| NADH oxidoreductase F subunit [Ajellomyces dermatitidis ATCC 18188]
          Length = 518

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 272/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W    +I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 68  LKDQDRIFQNLYGNHGADLKTAMKFGDWYKTKEIMLKGHDWIISEIKASGLRGRGGAGFP 127

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 128 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 187

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E  S+Q A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 188 TAAYIYIRGEFYNEATSVQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 247

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 248 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGKWFASFGRERNQ 307

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 308 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 367

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 368 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 427

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R   G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 428 TYQMMKRFESGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 487

Query: 418 QYHR 421
           +Y +
Sbjct: 488 KYEQ 491


>gi|114569910|ref|YP_756590.1| NADH dehydrogenase I subunit F [Maricaulis maris MCS10]
 gi|114340372|gb|ABI65652.1| NADH dehydrogenase subunit F [Maricaulis maris MCS10]
          Length = 437

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 280/420 (66%), Positives = 334/420 (79%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNL+G     L  +  RG W+   +IL++GRDWII  +KASGLRGRGGAGF
Sbjct: 5   LLQDKDRIFTNLFGHHSPDLEGAKQRGCWNGTTEILQQGRDWIIENMKASGLRGRGGAGF 64

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IASF++ AH 
Sbjct: 65  PTGLKWSFMPKEVGARPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASFSMQAHA 124

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE++ ER +++ AV E Y + L+G ++  G+   + +HHGAGAYICGEETALLE
Sbjct: 125 CYIYLRGEYVTERLAMEKAVKEAYEAKLIGDDNIHGWPFHVYIHHGAGAYICGEETALLE 184

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN GLYGCPTTVNNVESIAV  TILRRGA W++ FGRE N GTK
Sbjct: 185 SLEGKKGQPRLKPPFPANAGLYGCPTTVNNVESIAVAGTILRRGAEWFASFGRERNVGTK 244

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FSISGHVN PC VEE+MSI    LIE H GG+RGGWDNL AVIPGGSSV  LP      
Sbjct: 245 IFSISGHVNNPCNVEEAMSIPMKTLIETHAGGVRGGWDNLKAVIPGGSSVSLLPKDICDD 304

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    SGLGTAAVIVMD+STD++KAI R+S FY+HESCGQCTPCREGTGWM R
Sbjct: 305 VLMDFDALSAHKSGLGTAAVIVMDKSTDVVKAIARISYFYRHESCGQCTPCREGTGWMWR 364

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+ +G +   EID+L +V+  +EG TICALGDAAAWP+QGLI++FR  IE+RI+ Y 
Sbjct: 365 VLTRMSRGESTIEEIDMLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRSEIEDRINNYR 424


>gi|90423909|ref|YP_532279.1| NADH dehydrogenase I subunit F [Rhodopseudomonas palustris BisB18]
 gi|90105923|gb|ABD87960.1| NADH-quinone oxidoreductase, F subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 441

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 300/422 (71%), Positives = 342/422 (81%), Gaps = 1/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLYG     L  +  RG WD    I+EKGRDWIINE+K SGLRGRGGAGF
Sbjct: 1   MLDDKDRIFRNLYGQGDWGLEGARRRGSWDGTKAIIEKGRDWIINEMKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSFMPK  +D    YLVVNADESEPGTCKDR+IMRH+PH L+EGC++ASFA+GA 
Sbjct: 61  PTGMKWSFMPKESTDGRPSYLVVNADESEPGTCKDREIMRHDPHVLVEGCLLASFAMGAK 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IYVRGEFIRERE LQAAVD+ Y + L+G ++  G+  ++ V HGAGAYICGEETALL
Sbjct: 121 VCYIYVRGEFIREREHLQAAVDQAYEAKLIGQDNIHGWPFELYVTHGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV P ILRRGA+W+S  GR NN GT
Sbjct: 181 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPDILRRGAAWFSSIGRPNNVGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE+M I F ELIEKH GGIRGGWDNLLA+IPGG+S P +PA    
Sbjct: 241 KLFGISGHVNTPCVVEEAMGIPFRELIEKHGGGIRGGWDNLLAIIPGGASCPLIPAADCG 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             IMD+DG + + S LGTA VIVMD+STD++ AI R+S F+KHESCGQCTPCREGTGWM 
Sbjct: 301 ELIMDFDGTRAVKSSLGTAGVIVMDKSTDVVAAIARISYFFKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RV+ R+V+G A KREID+L EV+K +EG TICALGDAAAWPIQGLI+ FRP IE RID +
Sbjct: 361 RVLSRMVEGRAHKREIDMLLEVTKQVEGHTICALGDAAAWPIQGLIRAFRPEIERRIDDF 420

Query: 420 HR 421
            R
Sbjct: 421 SR 422


>gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 597

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 171/426 (40%), Positives = 253/426 (59%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  +S+ + ++R  +  + K+L K   + +I+ +KASGLRGRGGA
Sbjct: 111 FFKRQTRVTLRNTGLINPESIEEYIARDGYQALGKVLSKYSPEEVISAIKASGLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  +  S  P Y+V NADE +PG   DR I+  +PH+++E   I  +AIGA
Sbjct: 171 GFPTGLKWEFTARA-SGNPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAICGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+    + L+ A+ +C   GLLG N    G++ DI +  GAGA++CGEETA
Sbjct: 230 EKGFIYVRAEYPLAVQRLETAIGKCLEYGLLGRNIFSTGFNFDIEIRVGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++G+PR KPPFPA  GL+G PT +NNVE+ A +P I+  G  W+S  G EN++
Sbjct: 290 LLASIEGRRGEPRPKPPFPAQEGLWGKPTVINNVETWANIPPIILNGPEWFSAIGTENSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M     E+I    GGI        AV  GG S  C+PA  
Sbjct: 350 GTKVFALAGKINNTGLVEVPMGTPLKEIIYDIGGGIP-NGKKFKAVQTGGPSGGCIPAEY 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L ++G+ +G+  +I++D  T ++        F + ESCG+C PCR GT  
Sbjct: 409 L-DTPVDYDSLVKLGTIMGSGGMIIVDEDTCMVDLAKFFLEFVQEESCGKCAPCRIGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +MER+V+G  +  +I+LL E+S+ I+   +C LG  A  P+   +++FR      I 
Sbjct: 468 MLEIMERIVEGNGKDGDIELLEELSQGIKSSALCGLGQTAPNPVLSTLRHFREEYIAHIK 527

Query: 418 QYHRCN 423
              RC 
Sbjct: 528 D-KRCP 532


>gi|315042968|ref|XP_003170860.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
 gi|311344649|gb|EFR03852.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
          Length = 535

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 274/426 (64%), Positives = 330/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DWIINEVK SGLRGRGGAGF 
Sbjct: 85  LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIINEVKTSGLRGRGGAGFP 144

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC+I+  A+ A
Sbjct: 145 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 204

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 205 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 264

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV P I RRG  W++GFGRE N+
Sbjct: 265 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPAICRRGGKWFAGFGRERNQ 324

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 325 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHV 384

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 385 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 444

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 445 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 504

Query: 418 QYHRCN 423
           Q  + N
Sbjct: 505 QNAQAN 510


>gi|322698851|gb|EFY90618.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Metarhizium acridum
           CQMa 102]
          Length = 486

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 268/426 (62%), Positives = 331/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG    +L  +   G W    +I+ KG DWIINE+KASGLRGRGGAGF 
Sbjct: 37  LKDQDRIFQNLYGRLPPNLKSAKKMGDWHKTKEIILKGHDWIINEIKASGLRGRGGAGFP 96

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 97  SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 156

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E   LQ A++E Y  GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 157 TAAYIYIRGEFVYEAAVLQNAINEAYKDGLIGKNACGSGYDFDVFIHRGAGAYVCGEETS 216

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+
Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 276

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 277 GTKLYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKNI 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R  +G  ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 397 TEQIMSRFERGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 457 KFAQEN 462


>gi|171682190|ref|XP_001906038.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941054|emb|CAP66704.1| unnamed protein product [Podospora anserina S mat+]
          Length = 497

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 272/426 (63%), Positives = 330/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +IL KG DWII E+KASGLRGRGGAGF 
Sbjct: 48  LRDQDRIFQNLYGRFPPDLKSAKKMGDWHKTKEILLKGHDWIIGEIKASGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 108 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 167

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI E   LQ A++E YA GL+G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 168 SAAYIYIRGEFIHEAAVLQNAINEAYADGLIGKNACGSGYDFDVYVHRGGGAYVCGEETS 227

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+
Sbjct: 228 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 287

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 288 GTKLFCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHV 347

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 407

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 408 TEQIMQRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 467

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 468 KFAQEN 473


>gi|298711911|emb|CBJ48598.1| NUOF homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus
           siliculosus]
          Length = 511

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 271/416 (65%), Positives = 331/416 (79%), Gaps = 1/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG Q   + D++ RG W    +I+  G DWI+ E+K SGLRGRGGAGF 
Sbjct: 54  LKDQDRIFTNLYGEQDWRVGDALKRGDWHQTKEIMWMGPDWIVQEMKDSGLRGRGGAGFP 113

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP +LVVNADESEPGTCKDR+IMR +PH L+EGC++A +A+ A  A
Sbjct: 114 SGLKWSFMPKNTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARAA 173

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+  E   +  A+ E Y  G LG N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 174 YIYIRGEYFNEAVVMDEAIHEAYQKGFLGKNACGSGYDFDVYLHRGAGAYICGEETALIE 233

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++G+PRLKPPFPANVG++GCPTTV NVE++AV PTILRRGASW++ FGR+NN GTK
Sbjct: 234 SLEGRQGKPRLKPPFPANVGVFGCPTTVTNVETVAVAPTILRRGASWFASFGRKNNHGTK 293

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN P  VEE MSIT  EL++KHCGG+RGGWDNL AVIPGGSSVP L       
Sbjct: 294 LFAISGHVNNPIVVEEEMSITLRELLDKHCGGVRGGWDNLQAVIPGGSSVPVLDINDCAD 353

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK+ GSGLGTAAV VMD+S D+I AI RL+ FYKHESCGQCTPCREGTGW+ +
Sbjct: 354 VMMDFDDLKKAGSGLGTAAVTVMDKSVDMIAAIRRLAHFYKHESCGQCTPCREGTGWLEQ 413

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ ++ KG A  REI +L E+S++IEG TICALGDAAAWP+QGLI+ F+P+IEERI
Sbjct: 414 MLVKMEKGEADTREIPMLEEISRSIEGHTICALGDAAAWPVQGLIRRFQPVIEERI 469


>gi|330914723|ref|XP_003296758.1| hypothetical protein PTT_06938 [Pyrenophora teres f. teres 0-1]
 gi|311330967|gb|EFQ95153.1| hypothetical protein PTT_06938 [Pyrenophora teres f. teres 0-1]
          Length = 506

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 266/422 (63%), Positives = 325/422 (77%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +   G W    +IL KG +WII+E+KASGLRGRGGAGF 
Sbjct: 57  LKDQDRIFQNLYGHHGADLKSAQKYGDWHKTKEILLKGHEWIISEIKASGLRGRGGAGFP 116

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 117 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 176

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 177 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETS 236

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++GFGRE N+
Sbjct: 237 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFAGFGRERNQ 296

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL++ISGHVN PC VEE MSI   +LIEKHCGG+RGGWDNL AVIPGGSS P LP   
Sbjct: 297 GTKLYAISGHVNRPCVVEEEMSIPLRDLIEKHCGGVRGGWDNLKAVIPGGSSTPILPKHI 356

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W
Sbjct: 357 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 416

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI 
Sbjct: 417 THQIMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIK 476

Query: 418 QY 419
            Y
Sbjct: 477 DY 478


>gi|125601292|gb|EAZ40868.1| hypothetical protein OsJ_25349 [Oryza sativa Japonica Group]
          Length = 514

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 86  LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 145

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 146 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 205

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L  A +E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 206 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 265

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 266 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 325

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 326 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 385

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 386 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 445

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 446 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 493


>gi|157803300|ref|YP_001491849.1| NADH dehydrogenase I subunit F [Rickettsia canadensis str. McKiel]
 gi|166918574|sp|A8EXI1|NUOF_RICCK RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|157784563|gb|ABV73064.1| NADH dehydrogenase I chain F [Rickettsia canadensis str. McKiel]
          Length = 420

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 288/419 (68%), Positives = 334/419 (79%), Gaps = 2/419 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IF NL+G Q   L  S  RG WDN   +L+KGRD+II EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFINLHGQQSHDLKSSKKRGDWDNTKALLDKGRDFIIEEVKQSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHCGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA+ GLYGCPTT+NNVESIAVVPTILRRGA+W++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPASFGLYGCPTTINNVESIAVVPTILRRGANWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE M I   ELIEK+ GG++GGW+NL A+IPGGSSVP +P     
Sbjct: 240 KVFCISGHVNKPCNVEEVMGIPLKELIEKYAGGVQGGWNNLKAIIPGGSSVPLIPKSICE 299

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVM++STDI+ AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 300 TVDMDFDSLRTAGSGLGTGGIIVMNQSTDIVYAIARLSKFYMHESCGQCTPCREGTGWMW 359

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVM RLVKG A+K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IEERI  
Sbjct: 360 RVMMRLVKGNAKKSEIDQLLSVTKAIEGHTICALGDAAAWPIQGLIRHFRDEIEERICH 418


>gi|329889336|ref|ZP_08267679.1| NADH oxidoreductase quinone, F subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328844637|gb|EGF94201.1| NADH oxidoreductase quinone, F subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 437

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 285/426 (66%), Positives = 336/426 (78%), Gaps = 2/426 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYG     L  +  RG W+    +L+ GRDWII  VK SGLRGRGGAGF
Sbjct: 4   ILQDKDRIFTNLYGFHDWGLEGAKKRGAWNATKDMLDLGRDWIIANVKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK   DRPHYLV+NADESEP TCKDR+IMRH+P  LIEG +IASFA+ AH 
Sbjct: 64  STGLKWSFMPKEVKDRPHYLVINADESEPATCKDREIMRHDPQLLIEGALIASFAMQAHA 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+I ERE ++AAV + Y + L+G ++  G+D  + +HHGAGAYICGEETALLE
Sbjct: 124 CYIYLRGEYILERERMEAAVKQAYEAKLIGDDNVHGWDFHVYIHHGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAVV TILRRGA W++GFGR NN GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVVGTILRRGADWFAGFGRPNNTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L S+SGHVN PC VEE+MSI   +LIE H GG+RGGW+NL A+IPGG+S P +   Q   
Sbjct: 244 LMSLSGHVNTPCVVEEAMSIPLRQLIEDHGGGVRGGWENLKAIIPGGASCPVITREQAEV 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D ++EM S LGTA V VMD+STDI+KAI R+S F+KHESCGQCTPCREGTGWM R
Sbjct: 304 ALMDFDSMREMRSSLGTAGVTVMDQSTDIVKAIARISYFFKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY- 419
           V+ER+  G A   EIDLL +V+  +EG TICALGDAAAWP+QGLI++FR  IEERI  Y 
Sbjct: 364 VLERMAIGDADPSEIDLLLDVAGQVEGHTICALGDAAAWPVQGLIRHFRHEIEERIHTYR 423

Query: 420 -HRCNF 424
             R NF
Sbjct: 424 SRRANF 429


>gi|94496476|ref|ZP_01303053.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas sp. SKA58]
 gi|94424222|gb|EAT09246.1| NADH-quinone oxidoreductase, F subunit [Sphingomonas sp. SKA58]
          Length = 445

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 295/419 (70%), Positives = 340/419 (81%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG Q   +  +M RG WDN   +LE G+D IIN +KASGLRGRGGAGF 
Sbjct: 17  LADKDRIFTNVYGFQDWGIDAAMKRGDWDNTKALLEIGQDEIINRIKASGLRGRGGAGFP 76

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TGMKWSFMPK   D    +LV+NADESEPG+CKDR+I+RH+PH LIEG +IA FA+ A  
Sbjct: 77  TGMKWSFMPKESKDGRPSFLVINADESEPGSCKDREIIRHDPHKLIEGALIAGFAMRARA 136

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEFI E + L AAV++ YA G LG N+   GYD D+ VH GAGAYICGEETA +
Sbjct: 137 AYIYIRGEFIYEAKVLFAAVEQAYAKGFLGKNACGSGYDFDVFVHRGAGAYICGEETAQI 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYGCPTTVNNVESIAV PTILRR   W++  GR NN GT
Sbjct: 197 ESLEGKKGQPRLKPPFPAGAGLYGCPTTVNNVESIAVGPTILRRSPEWFASIGRPNNLGT 256

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE+M I F ELI++HCGGIRGGWDNLLAVIPGGSSVP +PA ++ 
Sbjct: 257 KLFQISGHVNKPCVVEEAMGIPFRELIDRHCGGIRGGWDNLLAVIPGGSSVPLVPAKEIM 316

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MD+DGLK +GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 317 DAPMDFDGLKALGSGLGTAAVIVMDKSTDIVRAISRLSYFYKHESCGQCTPCREGTGWMW 376

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RVMERL  G A + EID+L++V+K +EG TICALGDAAAWPIQGLI++FRP IE RI +
Sbjct: 377 RVMERLRTGDADQSEIDMLFQVTKQVEGHTICALGDAAAWPIQGLIRHFRPEIERRIAE 435


>gi|302498901|ref|XP_003011447.1| hypothetical protein ARB_02297 [Arthroderma benhamiae CBS 112371]
 gi|291174998|gb|EFE30807.1| hypothetical protein ARB_02297 [Arthroderma benhamiae CBS 112371]
          Length = 535

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 272/426 (63%), Positives = 331/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DWII+E+K SGLRGRGGAGF 
Sbjct: 85  LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWIISEIKTSGLRGRGGAGFP 144

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++  A+ A
Sbjct: 145 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 204

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 205 TAAYIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 264

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++GFGRE N+
Sbjct: 265 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQ 324

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 325 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHI 384

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 385 CDDQMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKW 444

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 445 TLQMMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 504

Query: 418 QYHRCN 423
           Q  + N
Sbjct: 505 QNAQAN 510


>gi|302833609|ref|XP_002948368.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Volvox carteri f.
           nagariensis]
 gi|300266588|gb|EFJ50775.1| NADH:ubiquinone oxidoreductase 51 kDa subunit [Volvox carteri f.
           nagariensis]
          Length = 489

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 283/420 (67%), Positives = 334/420 (79%), Gaps = 3/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF N+YG    S+  +MSRG W    +++ KGRDWII+++K SGLRGRGGAGF 
Sbjct: 59  LKDDDRIFQNIYGRHDTSIKGAMSRGDWYMTKELVLKGRDWIIDQMKKSGLRGRGGAGFP 118

Query: 62  TGMKWSFMPKV--CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           +G+KWSFMPK      RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC+IA  A+GA 
Sbjct: 119 SGLKWSFMPKAMASDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLIAGVAMGAR 178

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+RGEF+ ER S+  A+DE YA G LG N+   G D D++VH+GAGAYICGEETAL
Sbjct: 179 AGYIYIRGEFVNERRSVMRAIDEAYAKGFLGKNACGSGVDFDLMVHYGAGAYICGEETAL 238

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGK+G+PRLKPPFPA VGLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN G
Sbjct: 239 IESLEGKQGKPRLKPPFPAGVGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAG 298

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TKLF ISGHVN PCTVEE MSI   ELIE+H GG+RGGWDNLLA+IPGGSSVP L     
Sbjct: 299 TKLFCISGHVNRPCTVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLLTKKLC 358

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              +MD+D LKE  SGLGTAAVIVMD+STD+I AI RLS FYKHESCGQCTPCREGTGW+
Sbjct: 359 DTVLMDFDALKEAQSGLGTAAVIVMDKSTDVIDAIARLSYFYKHESCGQCTPCREGTGWL 418

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +M R+ KG A+  EID+L+E++K IEG TICALGDAAAWP+QGLI++FR  +E+RI  
Sbjct: 419 YDIMTRMKKGDARLEEIDMLWEITKQIEGHTICALGDAAAWPVQGLIRHFRHEMEDRIKN 478


>gi|219885535|gb|ACL53142.1| unknown [Zea mays]
          Length = 504

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 279/408 (68%), Positives = 327/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  ++ RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGLHDPFLKGAVKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMR +PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRQDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 436 IMERLKVGDAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 483


>gi|242769552|ref|XP_002341788.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724984|gb|EED24401.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 497

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 270/424 (63%), Positives = 333/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W    +++ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 48  LKDQDRIFTNLYGHHGTDLKSAMKYGDWHKTKEMILKGHDWLISEIKASGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 108 SGLKYSFMNFKDWDKDSRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 167

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 168 TAAYIYIRGEFYHEATTLQRAIQEAYQAGLIGKNACGTGYDFDVYLHRGAGAYVCGEETS 227

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRGASW++GFGRE N+
Sbjct: 228 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIVRRGASWFAGFGRERNQ 287

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCT+EE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 288 GTKLFCISGHVNNPCTIEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKKI 347

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 407

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R+  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 408 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 467

Query: 418 QYHR 421
           +Y  
Sbjct: 468 KYEE 471


>gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 599

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 159/426 (37%), Positives = 252/426 (59%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +I T N+  +   ++ + ++R  +  + K+L+    D ++ EVK SGLRGRGGA
Sbjct: 111 FFARQVKIATRNVGYIDPMNIEEYIARDGYFALAKVLKHMSPDQVVEEVKKSGLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K   +   Y++ NADE +PG   DR ++  +PHT++E   IA +AIGA
Sbjct: 171 GFPTGLKWELTRKSKGE-KKYIICNADEGDPGAFMDRSVLEGDPHTILEAMAIAGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    E L AA+ +    G LG N     +  DI +  GAGA++CGEETA
Sbjct: 230 NQGYIYVRAEYPLAIERLNAAISQAKEYGFLGENIMDSNFGFDIEIRIGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+GQPR+KPP+PA  G++GCPT +NNVE++A +P I+ +GA W+   G E + 
Sbjct: 290 LIASIEGKRGQPRVKPPYPAQSGVWGCPTVINNVETLACIPPIIIKGADWFRSIGTEKSP 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M IT  EL+ +  GG       + AV  GG S  C+P+  
Sbjct: 350 GTKVFALAGKITNTGLVEVPMGITLKELLYEIGGG-SSTGKKIKAVQTGGPSGGCIPSDY 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+ L+++G+ +G+  +IVMD    ++        F   ESCG+CTPCREGT  
Sbjct: 409 -FDTPVDYESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVDESCGKCTPCREGTRQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+++++++  G   +R+++ L  ++  I+  ++C LG  A  P+   ++ +R   E  + 
Sbjct: 468 MLKILDKITSGEGTERDLEELERLANVIKDTSLCGLGQTAPNPVLSTLQYYRDEYEAHVK 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|169606386|ref|XP_001796613.1| hypothetical protein SNOG_06231 [Phaeosphaeria nodorum SN15]
 gi|111064942|gb|EAT86062.1| hypothetical protein SNOG_06231 [Phaeosphaeria nodorum SN15]
          Length = 502

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 269/426 (63%), Positives = 327/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W    +IL KG DWII+E+KASGLRGRGGAGF 
Sbjct: 53  LKDQDRIFQNLYGHHGADLKSAMKYGDWHKTKEILLKGHDWIISEIKASGLRGRGGAGFP 112

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++  A+ A
Sbjct: 113 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNA 172

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   L+ A+ E Y +G +G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 173 TAAYIYIRGEFYHEAAVLERAIQEAYKAGFIGKNACGSGYDFDVYVHRGMGAYVCGEETS 232

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+
Sbjct: 233 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQ 292

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF+ISGHVN+PCTVEE MSI   ELI+KHCGG+ GGWDNL AVIPGGSS P LP   
Sbjct: 293 GTKLFAISGHVNHPCTVEEEMSIPLRELIDKHCGGVIGGWDNLKAVIPGGSSTPILPKHV 352

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W
Sbjct: 353 CDDQLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKW 412

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI 
Sbjct: 413 THQIMDRFNKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIQ 472

Query: 418 QYHRCN 423
            Y   N
Sbjct: 473 GYAEKN 478


>gi|15242306|ref|NP_196470.1| CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster
           binding / FMN binding / NAD or NADH binding / NADH
           dehydrogenase (ubiquinone)/ oxidoreductase, acting on
           NADH or NADPH [Arabidopsis thaliana]
 gi|9759347|dbj|BAB10002.1| NADH dehydrogenase [Arabidopsis thaliana]
 gi|20260144|gb|AAM12970.1| NADH dehydrogenase [Arabidopsis thaliana]
 gi|30387597|gb|AAP31964.1| At5g08530 [Arabidopsis thaliana]
 gi|332003932|gb|AED91315.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Arabidopsis
           thaliana]
          Length = 486

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 280/408 (68%), Positives = 329/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 58  LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD ++ +H GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P      
Sbjct: 298 LFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>gi|212542183|ref|XP_002151246.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Penicillium
           marneffei ATCC 18224]
 gi|210066153|gb|EEA20246.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Penicillium
           marneffei ATCC 18224]
          Length = 505

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 271/424 (63%), Positives = 332/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     ++ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 56  LKDQDRIFTNLYGHHGTDLKSAMKYGDWYKTKDMILKGHDWLISEIKASGLRGRGGAGFP 115

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 116 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 175

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 176 TAAYIYIRGEFYEEATTLQRAIHEAYQAGLIGKNACGSGYDFDVYIHRGAGAYVCGEETS 235

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRG SW++GFGRE N+
Sbjct: 236 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIMRRGGSWFAGFGRERNQ 295

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 296 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKSI 355

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 356 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 415

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R+  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 416 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 475

Query: 418 QYHR 421
           QY +
Sbjct: 476 QYEK 479


>gi|115473713|ref|NP_001060455.1| Os07g0645400 [Oryza sativa Japonica Group]
 gi|23307584|dbj|BAC16718.1| putative NADH dehydrogenase [Oryza sativa Japonica Group]
 gi|113611991|dbj|BAF22369.1| Os07g0645400 [Oryza sativa Japonica Group]
          Length = 504

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 282/408 (69%), Positives = 328/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L  A +E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 316 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 436 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 483


>gi|321467624|gb|EFX78613.1| hypothetical protein DAPPUDRAFT_53209 [Daphnia pulex]
          Length = 437

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 274/419 (65%), Positives = 329/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     LS +M RG W    +IL KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 8   LKDEDRIFTNLYGRHDWRLSGAMKRGDWYKTKEILLKGVDWILNEVKKSGLRGRGGAGFP 67

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 68  SGMKWSFMNKPSDGRPRYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 127

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y  GL+G N+ + GYD D+ VH GAGAYICGEETAL+E
Sbjct: 128 YIYIRGEFYNEGTNVQVAIHEAYKQGLIGKNACESGYDFDVFVHRGAGAYICGEETALIE 187

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++G++GCPTTV NVE++AV PTI RRG  W+ GFGR  N GTK
Sbjct: 188 SIEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPTICRRGGDWFVGFGRPRNSGTK 247

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H  G+ GGWDNLLAVIPGGSS P +P      
Sbjct: 248 LFNISGHVNNPCTVEEEMSIPLRELIERHARGVVGGWDNLLAVIPGGSSTPMIPRKVCDD 307

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAA+IVM++ TD+I+AI RL  FYKHESCGQCTPCREGTGWM +
Sbjct: 308 VLMDFDALVAAQTGLGTAALIVMNKQTDVIRAIARLIEFYKHESCGQCTPCREGTGWMNK 367

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M R V+G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+ ++
Sbjct: 368 IMYRFVEGNAKPEEIDMLWELSKQIEGHTICALGDGAAWPVQGLIRHFRPEIEDRMKRF 426


>gi|225559879|gb|EEH08161.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
 gi|225559929|gb|EEH08211.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 512

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 273/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W     I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 62  LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWIISEIKASGLRGRGGAGFP 121

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 122 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 181

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 182 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 241

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 242 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 301

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 302 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHI 361

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 362 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 421

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 422 TMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 481

Query: 418 QYHR 421
           +Y +
Sbjct: 482 KYEQ 485


>gi|148284884|ref|YP_001248974.1| NADH dehydrogenase I subunit F [Orientia tsutsugamushi str.
           Boryong]
 gi|146740323|emb|CAM80727.1| NADH dehydrogenase I chain F [Orientia tsutsugamushi str. Boryong]
          Length = 422

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 269/421 (63%), Positives = 326/421 (77%), Gaps = 2/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +D+IFTNL G     L+ +  RG W     ++   R+WII E+K+SGLRGRGGAGF
Sbjct: 1   MLNIEDKIFTNLSGAMAVDLASAKKRGDWYTTKNLILNSREWIIEEIKSSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK  S++  YLVVNADESEPGTCKDRDI+R+EPH LIEGC++A++AIGA  
Sbjct: 61  PTGLKWSFMPKN-SEKATYLVVNADESEPGTCKDRDIIRYEPHKLIEGCLLAAYAIGAQT 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+  E   LQ A+ E Y + L+G N+    ++ ++ +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEYYNEALILQNAIQEAYGARLIGLNACGTDFNFNLYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPAN GLYGCPTT+NNVESIAVVPTILRRGA W++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPANTGLYGCPTTINNVESIAVVPTILRRGAKWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FSISGHVN PC +EE+M +    LIEK+ GG+RGGWDNL A+IPGGSSVP +P     
Sbjct: 240 KIFSISGHVNNPCNIEEAMGVPLKYLIEKYAGGVRGGWDNLKAIIPGGSSVPLIPKNICD 299

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D LK +GSGLGT  +IVMD +TDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 300 TVEMDFDSLKAVGSGLGTGGIIVMDNNTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 359

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M RLV+G A   +ID++ +V+K IEG TICALGDAAAWPIQGLIK+FR  IE+RI  +
Sbjct: 360 RIMMRLVEGNASVSDIDMILDVTKQIEGNTICALGDAAAWPIQGLIKHFRHEIEDRIKNF 419

Query: 420 H 420
           +
Sbjct: 420 N 420


>gi|73667105|ref|YP_303121.1| NADH dehydrogenase I subunit F [Ehrlichia canis str. Jake]
 gi|72394246|gb|AAZ68523.1| NADH dehydrogenase subunit F [Ehrlichia canis str. Jake]
          Length = 427

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 275/422 (65%), Positives = 326/422 (77%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DR+FTNLYG Q   L  + SRG W N+ +IL  G D II EVK SGLRGRGGAGF
Sbjct: 1   MLKDSDRVFTNLYGQQSPFLKSAKSRGVWSNILEILNLGPDHIIQEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK   D +P YLVVNADESEPGTCKDRDI+R++PH LIEG +IA FA+   
Sbjct: 61  STGLKWSFMPKTRKDGQPAYLVVNADESEPGTCKDRDILRYDPHRLIEGILIAGFAMNVT 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A++Y+RGEF  E   L  A+DE Y + L+G N+   GYD+DI +H GAGAYICGEETA 
Sbjct: 121 TAYVYIRGEFYNEYLVLSKALDEAYKAKLIGKNACGSGYDLDIFIHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA V  I+RRG+ W++  G+ENN G
Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATVSEIMRRGSDWFASLGKENNTG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP    
Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMKELIEKYAGGVRGGWDNLLAVIPGGSSVPMLPKSIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L+ + SGLGTA +IVMD+STD+I AI RLS FY HESCGQCTPCREGTGWM
Sbjct: 301 DTVTMDFDSLRAVQSGLGTAGLIVMDKSTDLIAAIERLSHFYMHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R+M+++VKG A    IDLL  ++  +EG TICALGDAAAWPIQGLI++FR +IE+RI  
Sbjct: 361 WRIMQKMVKGDATSESIDLLLNITHQVEGHTICALGDAAAWPIQGLIRHFRDVIEDRIKN 420

Query: 419 YH 420
           Y+
Sbjct: 421 YN 422


>gi|225462161|ref|XP_002266661.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 487

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 283/408 (69%), Positives = 331/408 (81%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 58  LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATTA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER++L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERKNLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++GFGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNAGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 298 LYCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW++ 
Sbjct: 358 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLLM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A   EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 418 MMERLKVGNANLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>gi|295689621|ref|YP_003593314.1| NADH-quinone oxidoreductase subunit F [Caulobacter segnis ATCC
           21756]
 gi|295431524|gb|ADG10696.1| NADH-quinone oxidoreductase, F subunit [Caulobacter segnis ATCC
           21756]
          Length = 439

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 293/421 (69%), Positives = 340/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYGLQ   L  +  RG W+    IL+ GRDWII+ +K SGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGLQDWGLEGAKKRGCWNGTKDILDAGRDWIIDNMKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK     RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ A+
Sbjct: 64  STGLKWSFMPKEVKEGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAN 123

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGE++ ERE L+AA+ + Y + L+G N+  G+D D+ VHHGAGAYICGEETALL
Sbjct: 124 ACYIYIRGEYVFERERLEAAIKQAYEAKLIGKNNVHGWDFDLYVHHGAGAYICGEETALL 183

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYG PTTVNNVESIAV  TILRRGA+W++GFGR NN GT
Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNAGT 243

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGHVN PC VEE+MSI F +LIE HCGGIRGGW NL AVIPGGSSVP +PA Q  
Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLIEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ + SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 304 DLPMDFDALRNLRSGLGTAAVIVMDKSTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+  G A  +EID L +V+  +EG TICALGDAAAWPIQGL ++FR  +EERI  Y
Sbjct: 364 RVMERMATGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEERIASY 423

Query: 420 H 420
            
Sbjct: 424 R 424


>gi|46134221|ref|XP_389426.1| NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial precursor (Complex I-51KD) (CI-51KD)
           [Gibberella zeae PH-1]
          Length = 486

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 272/426 (63%), Positives = 334/426 (78%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY      L  +   G W    +I+ KG DWII+EVKASGLRGRGGAGF 
Sbjct: 37  LRDQDRIFQNLYNRYPVDLKSARKMGDWHKTKEIILKGHDWIISEVKASGLRGRGGAGFP 96

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLV+NADE EPGTCKDR+IMR +PH LIEGC+I+  A+ A
Sbjct: 97  SGLKWSFMNFKDWDKDNKPRYLVINADEGEPGTCKDREIMRKDPHKLIEGCLISGRAMNA 156

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E   LQ A++E YA+GL+G N+ + GYD D+ +H GAGAY+CGEET+
Sbjct: 157 TAAYIYIRGEFVEEAAVLQRAINEAYAAGLIGKNACESGYDFDVYLHRGAGAYVCGEETS 216

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+
Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGSWFAGFGRERNQ 276

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 277 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPVLPKSV 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSHFYRHESCGQCTPCREGSKW 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 397 TEQMMKRFEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 457 KFAQEN 462


>gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
 gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
          Length = 597

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +    +  + K+L    +  +I+ +K SGLRGRGGA
Sbjct: 111 FYNRQRRIVLKNCGVIDPENIEEYIGADGYQALAKVLTGMTQQEVIDTIKKSGLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      D   Y++ NADE +PG   DR ++  +PH L+E   IA +A+GA
Sbjct: 171 GFPTGLKWQFTHDAIGD-KKYVLCNADEGDPGAFMDRSVLEGDPHALLEAMTIAGYAVGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L  A+++    GLLGSN    G+  DI +  GAGA++CGEETA
Sbjct: 230 DQGYIYVRAEYPLAVKRLNIAINQAREYGLLGSNIFGTGFKFDIDLRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+PR +PPFPAN G++G PT +NNVE+ A VP I+  G  W++  G + ++
Sbjct: 290 LMTSIEGKRGEPRPRPPFPANKGVFGKPTLLNNVETYANVPQIILNGPEWFASIGTDKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E+I    GGI  G     A   GG S  C+PA Q
Sbjct: 350 GTKVFALGGKINNTGLVEIPMGTTLREVIYDIGGGIPQG-KAFKAAQTGGPSGGCIPA-Q 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                ++YD L ++GS +G+  +IVMD    ++        F   ESCG+C PCR GT  
Sbjct: 408 FLDMPIEYDSLIQIGSMMGSGGMIVMDEDNCMVDIARFFLQFTVDESCGKCPPCRIGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++R+V+G  ++ +I+LL  ++KNI+   +C LG  A  P+   +K FR   E  I 
Sbjct: 468 MLEILDRIVEGKGKEGDIELLETLAKNIKASALCGLGQTAPNPVLSTLKYFRDEYEAHIR 527

Query: 418 QYHRCN 423
              +C 
Sbjct: 528 D-KKCP 532


>gi|147841727|emb|CAN73193.1| hypothetical protein VITISV_022287 [Vitis vinifera]
          Length = 489

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 283/408 (69%), Positives = 331/408 (81%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 60  LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 119

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 120 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATTA 179

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER++L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 180 YIYIRGEYVNERKNLERARKEAYEAGLLGKNACXSGYDFDVHIHYGAGAYICGEETALLE 239

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++GFGR+NN GTK
Sbjct: 240 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNAGTK 299

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 300 LYCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 359

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW++ 
Sbjct: 360 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLLM 419

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A   EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 420 MMERLKVGNANLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 467


>gi|325089901|gb|EGC43211.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 512

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 273/424 (64%), Positives = 328/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W     I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 62  LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWIISEIKASGLRGRGGAGFP 121

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 122 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 181

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 182 TAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYICGEETS 241

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 242 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 301

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 302 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHI 361

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 362 CDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 421

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 422 TMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 481

Query: 418 QYHR 421
           +Y +
Sbjct: 482 KYEQ 485


>gi|85086245|ref|XP_957659.1| NADH-quinone oxidoreductase chain F 1 [Neurospora crassa OR74A]
 gi|67477366|sp|P24917|NDUV1_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; Flags: Precursor
 gi|28918753|gb|EAA28423.1| NADH-quinone oxidoreductase chain F 1 [Neurospora crassa OR74A]
 gi|39979235|emb|CAE85605.1| NADH2 dehydrogenase (ubiquinone) flavoprotein 1 precursor
           [Neurospora crassa]
          Length = 493

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 272/426 (63%), Positives = 332/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +IL KG DWII EVKASGLRGRGGAGF 
Sbjct: 44  LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103

Query: 62  TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM        D+P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 104 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 163

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI+E   LQ A++E YA GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 164 TAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 223

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+
Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGRERNQ 283

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 284 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 344 CDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 463

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 464 KFAQEN 469


>gi|322710840|gb|EFZ02414.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 486

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 266/426 (62%), Positives = 329/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +I+ KG DWIINE+KASGLRGRGGAGF 
Sbjct: 37  LKDQDRIFQNLYGRFPPDLKSAKKMGDWHKTKEIILKGHDWIINEIKASGLRGRGGAGFP 96

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 97  SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 156

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E   LQ A++E Y  GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 157 TAAYIYIRGEFVYEAAVLQNAINEAYKDGLIGKNACGSGYDFDVFIHRGGGAYVCGEETS 216

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+
Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQ 276

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLA+IPGGSS P LP   
Sbjct: 277 GTKLYCISGHVNNPCTVEEEMSIPLRELIDKHCGGVRGGWDNLLAIIPGGSSTPILPKNI 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R  +G  ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 397 TEQIMSRFERGQGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 457 KFAQEN 462


>gi|157828027|ref|YP_001494269.1| NADH dehydrogenase I subunit F [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932725|ref|YP_001649514.1| NADH dehydrogenase I subunit F [Rickettsia rickettsii str. Iowa]
 gi|166918576|sp|A8GQT6|NUOF_RICRS RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|27312012|gb|AAO00970.1| NADH dehydrogenase I chain F [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800508|gb|ABV75761.1| NADH dehydrogenase I chain F [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165907812|gb|ABY72108.1| NADH-quinone oxidoreductase chain F [Rickettsia rickettsii str.
           Iowa]
          Length = 421

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 292/420 (69%), Positives = 334/420 (79%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK   ++  YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G NS   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLVKG   K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI  Y
Sbjct: 359 RVMMRLVKGNVTKSEIDELLNVTKAIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418


>gi|307136131|gb|ADN33976.1| NADH-ubiquinone oxidoreductase flavoprotein [Cucumis melo subsp.
           melo]
          Length = 480

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 285/408 (69%), Positives = 330/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 52  LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFP 111

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 112 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRATAA 171

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER++L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 172 YIYIRGEYVNERKNLEKARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 231

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 232 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 291

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 292 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 351

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STDI+ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 352 VLMDYDALKAVQSGLGTAAVIVMDKSTDIVDAIARLSYFYKHESCGQCTPCREGTGWLWM 411

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLIKNF
Sbjct: 412 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIKNF 459


>gi|297810971|ref|XP_002873369.1| hypothetical protein ARALYDRAFT_487692 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297319206|gb|EFH49628.1| hypothetical protein ARALYDRAFT_487692 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 486

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 282/408 (69%), Positives = 330/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           LTD+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 58  LTDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFDVYIHFGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P      
Sbjct: 298 LFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>gi|320589001|gb|EFX01469.1| NADH-ubiquinone oxidoreductase mitochondrial precursor [Grosmannia
           clavigera kw1407]
          Length = 525

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 268/426 (62%), Positives = 331/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY      L  +   G W    +IL KG +WII+EVKASGLRGRGGAGF 
Sbjct: 76  LKDQDRIFQNLYSRYPPDLKHARKMGDWHKTKEILLKGHEWIISEVKASGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA  A+ A
Sbjct: 136 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 195

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E E LQAA++E YA GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 196 TAAYIYIRGEFVYEAEVLQAAINEAYAEGLIGKNACGSGYDFDVFIHRGAGAYVCGEETS 255

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VG++GCP+TV NVE++AV PTI RRG +W++GFGRE N+
Sbjct: 256 LIESIEGKPGKPRLKPPFPAAVGVFGCPSTVTNVETVAVAPTICRRGGAWFAGFGRERNQ 315

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWD LLAVIPGGSS P LP   
Sbjct: 316 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDKLLAVIPGGSSTPILPKSM 375

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 376 CEDQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 435

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R  KG+ ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 436 TEQIMSRFEKGMGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 495

Query: 418 QYHRCN 423
           ++   N
Sbjct: 496 KFAAEN 501


>gi|194700414|gb|ACF84291.1| unknown [Zea mays]
 gi|195621570|gb|ACG32615.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Zea mays]
 gi|238010292|gb|ACR36181.1| unknown [Zea mays]
          Length = 504

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 281/408 (68%), Positives = 329/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   EL+E+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L+EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 436 IMERLKVGDAKLEEIDMLHEVTKQIEGHTICALGDAAAWPVQGLIRHF 483


>gi|226528477|ref|NP_001141461.1| hypothetical protein LOC100273571 [Zea mays]
 gi|194704660|gb|ACF86414.1| unknown [Zea mays]
          Length = 504

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 271/424 (63%), Positives = 334/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W    +++ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 55  LKDQDRIFTNLYGHHGTDLKSAMKYGDWHKTKEMILKGHDWLISEIKASGLRGRGGAGFP 114

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 115 SGLKYSFMNFKDWDKDSRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 174

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 175 TAAYIYIRGEFYHEATTLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 234

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AVVPTI+RRGASW++GFGRE N+
Sbjct: 235 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVVPTIVRRGASWFAGFGRERNQ 294

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 295 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPILPKNI 354

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 355 CDEQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 414

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R+  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 415 TQQIMHRMEHGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 474

Query: 418 QYHR 421
           +Y +
Sbjct: 475 KYEQ 478


>gi|330994059|ref|ZP_08317989.1| NADH-quinone oxidoreductase chain 1 [Gluconacetobacter sp. SXCC-1]
 gi|329759005|gb|EGG75519.1| NADH-quinone oxidoreductase chain 1 [Gluconacetobacter sp. SXCC-1]
          Length = 454

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 289/421 (68%), Positives = 339/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG    +L+ + +RG WD   +IL +GRD IINE+KASGLRGRGGAGF
Sbjct: 14  MLQDKDRIFTNLYGQGDWTLAGARARGDWDGTAEILARGRDAIINEMKASGLRGRGGAGF 73

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+N DESEPGTCKDR+I+RH+PH L+E  +IASFA+GAH 
Sbjct: 74  PTGVKWSFMPKKNDGRPHYLVINGDESEPGTCKDREILRHDPHKLVESALIASFAMGAHA 133

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   LQ A+DE YA+GL+G N+   G+D D  +H GAGAYICGEETALL
Sbjct: 134 AYIYIRGEFYNEAMHLQHAIDEAYAAGLIGPNACGSGWDFDFYIHRGAGAYICGEETALL 193

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV  TILRRGA+W+SG GR NN GT
Sbjct: 194 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVSATILRRGAAWFSGLGRPNNAGT 253

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +ISGHVN PC  EE + +   ELIEKH GG+RGGWDNLLAVIPGG SVP LP     
Sbjct: 254 KLMAISGHVNTPCVFEEELGVPMRELIEKHGGGVRGGWDNLLAVIPGGCSVPMLPRDVCD 313

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+  GSGLGT  +IVMD+STDII AI R S F+KHESCGQCTPCREGTGWMM
Sbjct: 314 TVLMDYDSLRAEGSGLGTGCMIVMDKSTDIIAAIARFSKFFKHESCGQCTPCREGTGWMM 373

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M+R+V+G A+  EID+L +V++ +EG TICALGDAAAWPIQGLI+ FRP++EERI  Y
Sbjct: 374 RIMDRMVQGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRRFRPVMEERIRAY 433

Query: 420 H 420
            
Sbjct: 434 K 434


>gi|70993752|ref|XP_751723.1| NADH-ubiquinone oxidoreductase, subunit F [Aspergillus fumigatus
           Af293]
 gi|66849357|gb|EAL89685.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           fumigatus Af293]
 gi|159125355|gb|EDP50472.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           fumigatus A1163]
          Length = 496

 Score =  531 bits (1369), Expect = e-149,   Method: Composition-based stats.
 Identities = 275/424 (64%), Positives = 331/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LRDQDRIFTNLYGHHGTDLKSAMKFGDWHRTKDIVLKGHDWLISEIKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +PH LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 167 TAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FG E N 
Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFSSFGAERNS 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 347 CDNQIMDFDSLKDSQSGLGTAAVIVMDKSTDIVRAISRLSKFYKHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 407 TAQMMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466

Query: 418 QYHR 421
           +Y R
Sbjct: 467 EYER 470


>gi|238650711|ref|YP_002916564.1| NADH dehydrogenase I subunit F [Rickettsia peacockii str. Rustic]
 gi|238624809|gb|ACR47515.1| NADH dehydrogenase I subunit F [Rickettsia peacockii str. Rustic]
          Length = 421

 Score =  531 bits (1368), Expect = e-149,   Method: Composition-based stats.
 Identities = 292/420 (69%), Positives = 335/420 (79%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK   ++  YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G NS   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQHALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLVKG  +K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI  Y
Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418


>gi|67459570|ref|YP_247194.1| NADH dehydrogenase I subunit F [Rickettsia felis URRWXCal2]
 gi|75536030|sp|Q4UKA6|NUOF_RICFE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|67005103|gb|AAY62029.1| NADH dehydrogenase I chain F [Rickettsia felis URRWXCal2]
          Length = 422

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 294/418 (70%), Positives = 336/418 (80%), Gaps = 3/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG WDN   +L+KGR++II EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWDNTKALLDKGREFIIEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  + +P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNSA-KPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGAND 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVM RLVKG AQK EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IEERI 
Sbjct: 359 RVMMRLVKGNAQKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIK 416


>gi|21593325|gb|AAM65274.1| NADH dehydrogenase [Arabidopsis thaliana]
          Length = 486

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 279/408 (68%), Positives = 328/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 58  LKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFP 117

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 118 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 177

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD ++ +H GAGAYICGEETALLE
Sbjct: 178 YIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLE 237

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W+S FGR+NN GTK
Sbjct: 238 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTK 297

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF IS HVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLA+IPGGSSVP +P      
Sbjct: 298 LFCISXHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICED 357

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 358 VLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 417

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MER+  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 418 IMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHF 465


>gi|147678346|ref|YP_001212561.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146274443|dbj|BAF60192.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 551

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 165/422 (39%), Positives = 243/422 (57%), Gaps = 5/422 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59
               Q  +  N   +   S+ + + R  +  + K+L       +I EVK SGLRGRGGAG
Sbjct: 124 FKKQQKIVLRNTIYIDPLSIEEYIGRDGYAALAKVLTQMTPAQVIEEVKKSGLRGRGGAG 183

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           FSTGMKW F        P Y+V N DE +PG   DR ++  +PH++IEG  I  +AIGA 
Sbjct: 184 FSTGMKWGFTA-AAPGTPKYVVCNGDEGDPGAFMDRSVLEGDPHSVIEGMAICGYAIGAE 242

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             ++YVR E+    + L  A+++    GLLG N     ++ DI +  GAGA++CGEETAL
Sbjct: 243 QGYVYVRAEYPLAIQRLSYAIEKAREYGLLGKNIFGTSFNFDIEIRIGAGAFVCGEETAL 302

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L S+EGK+G+PR +PPFPA  G++G PT +NNVE+ A +  I+ +GA WY+  G E ++G
Sbjct: 303 LASIEGKRGEPRPRPPFPAQSGVWGKPTVINNVETWANIAPIILKGADWYASIGTEKSKG 362

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +N    VE  M IT  E++ +  GGI        AV  GG S  C+PA  +
Sbjct: 363 TKVFALAGRINNTGIVEVPMGITLREIVYEIGGGIP-RKKQFKAVQTGGPSGGCIPAEHL 421

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L  +G+ +G+  +IVMD  T ++        F   ESCG+C+PCR GT  M
Sbjct: 422 -DTPIDYDSLGALGAIMGSGGMIVMDEDTCMVDIAKFFLDFVVDESCGKCSPCRIGTKRM 480

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +++R+  G  ++ +I+LL E++  I+   +C LG  A  P+   I+ FR   EE I +
Sbjct: 481 YEILDRITNGQGREGDIELLSELATTIKNTALCGLGQTAPNPVLSTIRYFRDEYEEHIKE 540

Query: 419 YH 420
             
Sbjct: 541 RK 542


>gi|229586353|ref|YP_002844854.1| NADH dehydrogenase I subunit F [Rickettsia africae ESF-5]
 gi|228021403|gb|ACP53111.1| NADH dehydrogenase I chain F [Rickettsia africae ESF-5]
          Length = 421

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 291/418 (69%), Positives = 334/418 (79%), Gaps = 3/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK   ++  YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNL-EQSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G NS   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVM RLVKG  +K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI 
Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIK 416


>gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
 gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
          Length = 602

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q ++ T N+  +   S+ + ++R  +  + K L E   + +I  VK SGLRGRGGA
Sbjct: 111 FFSRQVKVATRNVGIIDPLSIDEYIARDGYFALHKALKEMTPEQVIEVVKESGLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   Y++ NADE +PG   DR I+  +PH++IE   IA++AIGA
Sbjct: 171 GFPTGLKWEFARKSPGD-EKYMICNADEGDPGAFMDRSILEGDPHSIIEAMTIAAYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F+YVR E+    E L  A+++    G LG N     +  DI +  GAGA++CGEETA
Sbjct: 230 TKGFVYVRAEYPIAIERLTVALNQAREYGFLGENILGTDFSFDIEIRIGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+GQPR+KPPFPA  GL+G P+ +NNVE++A VP I+  G  W+  +G E + 
Sbjct: 290 LMHSIEGKRGQPRVKPPFPAQKGLWGKPSNINNVETLACVPPIIYHGPQWFRQWGTEKSP 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     VE  M IT  ELI +  GG   G   + AV  GG S   +P   
Sbjct: 350 GTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGSPTG-KKIKAVQTGGPSGGVIPEEY 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+ L+++G+ +G+  +IV+D    ++        F   ESCG+CTPCREGT  
Sbjct: 409 -FDTPVDYESLQQLGAIVGSGGMIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTKK 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  +++++ KG   + +I++L  ++  I+  ++C LG  A  P+   ++ ++      + 
Sbjct: 468 MYEILDKITKGEGTEEDIEILENLANVIKDSSLCGLGQTAPNPVLSTLRYYKDEYLAHVR 527

Query: 418 QYHRCN 423
               C 
Sbjct: 528 D-KTCP 532


>gi|34580891|ref|ZP_00142371.1| NADH dehydrogenase I chain F [Rickettsia sibirica 246]
 gi|28262276|gb|EAA25780.1| NADH dehydrogenase I chain F [Rickettsia sibirica 246]
          Length = 421

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 291/418 (69%), Positives = 334/418 (79%), Gaps = 3/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK   ++  YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G NS   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNVQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVM RLVKG  +K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI 
Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIK 416


>gi|226529035|ref|NP_001141093.1| hypothetical protein LOC100273176 [Zea mays]
 gi|194702602|gb|ACF85385.1| unknown [Zea mays]
          Length = 504

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 280/408 (68%), Positives = 328/408 (80%), Gaps = 1/408 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVIKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLEKARQEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN PCTVEE MSI   EL+E+HCGG+RGGWDNLLAVIP GSSVP LP      
Sbjct: 316 LYCISGHVNKPCTVEEEMSIPLKELLERHCGGVRGGWDNLLAVIPSGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGT W+  
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTPWLWM 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           +MERL  G A+  EID+L+EV+K IEG TICALGDAAAWP+QGLI++F
Sbjct: 436 IMERLKVGDAKLEEIDMLHEVTKQIEGHTICALGDAAAWPVQGLIRHF 483


>gi|15892078|ref|NP_359792.1| NADH dehydrogenase I subunit F [Rickettsia conorii str. Malish 7]
 gi|20139048|sp|Q92JB2|NUOF_RICCN RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|15619200|gb|AAL02693.1| NADH dehydrogenase I chain F [Rickettsia conorii str. Malish 7]
          Length = 421

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 291/418 (69%), Positives = 334/418 (79%), Gaps = 3/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK   ++  YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKNL-EKSCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G NS   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDQSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVM RLVKG  +K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI 
Sbjct: 359 RVMMRLVKGNVKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIK 416


>gi|302895873|ref|XP_003046817.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727744|gb|EEU41104.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 486

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 272/424 (64%), Positives = 329/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +I+ KG DWII EVKASGLRGRGGAGF 
Sbjct: 37  LRDQDRIFQNLYGRYPVDLKSAKRMGDWHKTKEIILKGHDWIIGEVKASGLRGRGGAGFP 96

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA  A+ A
Sbjct: 97  SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 156

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E   LQ A++E YA GL+G N+   GYD D+ VH GAGAY+CGEET+
Sbjct: 157 TAAYIYIRGEFVEEAAVLQRAINEAYADGLIGKNACGSGYDFDVYVHRGAGAYVCGEETS 216

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+
Sbjct: 217 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGNWFAGFGRERNQ 276

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN P TVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 277 GTKLFCISGHVNNPVTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPVLPKHV 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 337 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSHFYRHESCGQCTPCREGSKW 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R  KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ 
Sbjct: 397 TEQIMSRFEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQ 456

Query: 418 QYHR 421
           ++ +
Sbjct: 457 KFAQ 460


>gi|160935016|ref|ZP_02082402.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
 gi|156866469|gb|EDO59841.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
          Length = 571

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +++  +  + K+L E   + +I  +K SGLRGRGGA
Sbjct: 85  FYAKQRRIALRNCGVINPENIDEYIAQDGYAALGKVLTEMTPEQVIQVIKDSGLRGRGGA 144

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWS      +D   Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA
Sbjct: 145 GFPTGVKWSLAAGNKAD-QKYVCCNADEGDPGAFMDRSVLEGDPHCVLEAMAIAGYAIGA 203

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 204 TKGYIYVRAEYPIAVKRLEIAIGQAREYGLLGKNIFDSGFDFDIQLRLGAGAFVCGEETA 263

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+PR +PP+PA  GL+G P+ +NNVE+ A +  I+  GA W++  G E ++
Sbjct: 264 LMTSIEGKRGEPRPRPPYPAVKGLFGKPSILNNVETYANIAQIILHGAEWFNSVGTEKSK 323

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G + +   VE  M  T  E++E+  GG+        A   GG S  C+PA  
Sbjct: 324 GTKVFALGGKIKHTGLVEIPMGTTLREIVEEIGGGVP-DGKKFKAAQTGGPSGGCIPAS- 381

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD +T ++        F   ESCG+CTPCR GT  
Sbjct: 382 LIDTPIDYDNLIAIGSMMGSGGLIVMDETTCMVDIAKFFLEFTVDESCGKCTPCRVGTKR 441

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++  G     +ID + E+   I+   +C LG  A  P+   ++ FR   E  + 
Sbjct: 442 LLEMLNKITSGTGTMEDIDKMEELCYYIKDNALCGLGQTAPNPVLSTLRYFRDEYEAHVK 501

Query: 418 QYHRCN 423
           + HRC 
Sbjct: 502 E-HRCP 506


>gi|320166203|gb|EFW43102.1| mitochondrial NADH:ubiquinone oxidoreductase NDUFV1/51 kDa subunit
           [Capsaspora owczarzaki ATCC 30864]
          Length = 480

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 266/421 (63%), Positives = 328/421 (77%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     +  +++RG W    +IL KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 39  LKDSDRIFTNLYGRHDWGIKGALARGDWYKTKEILLKGHDWILNEVKKSGLRGRGGAGFP 98

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 99  SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 158

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 159 YIYIRGEFYNEASNMQVAIHEAYKAGFLGKNACGSGYDFDVFMHRGAGAYICGEETALIE 218

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RR   W++ FGRE N+GTK
Sbjct: 219 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRTGEWFASFGRERNQGTK 278

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISG VN P TVEE MSI   ELIE+H GG+ GGWDNLLA+IPGG+SVP LP      
Sbjct: 279 LFCISGQVNTPVTVEEEMSIPLKELIERHAGGVIGGWDNLLAIIPGGASVPLLPRKICDD 338

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+++ SGLGTAAVIVM++ +D+I+ I RLS FYKHESCGQCTPCREG GW+ +
Sbjct: 339 VLMDFDALRDVTSGLGTAAVIVMNKQSDVIRCISRLSDFYKHESCGQCTPCREGVGWLAK 398

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M+R V G A+  EID++ E+++ IEG TICALGDAAAWP+QGLI++FRP IE RI  + 
Sbjct: 399 IMKRFVDGNAKPAEIDMIEELTRQIEGHTICALGDAAAWPVQGLIRHFRPEIESRIATFQ 458

Query: 421 R 421
           +
Sbjct: 459 Q 459


>gi|157964179|ref|YP_001499003.1| NADH dehydrogenase I subunit F [Rickettsia massiliae MTU5]
 gi|166918575|sp|A8F0M0|NUOF_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|157843955|gb|ABV84456.1| NADH dehydrogenase I chain F [Rickettsia massiliae MTU5]
          Length = 421

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 294/420 (70%), Positives = 338/420 (80%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+I+ EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIVEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKEGLIGKNACDSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPK-LLC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVEMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLVKG A+K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE RI  Y
Sbjct: 359 RVMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEARIKSY 418


>gi|312066286|ref|XP_003136198.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Loa loa]
 gi|307768633|gb|EFO27867.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Loa loa]
          Length = 468

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 268/423 (63%), Positives = 320/423 (75%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M  G W    ++L KG+DWII E+ ASG+RGRGGAGF 
Sbjct: 33  LRDEDRIFTNLYGRYDFRLKSAMKLGDWYKTKEVLLKGQDWIIKEMSASGMRGRGGAGFP 92

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM +    RP YL +NADE EPGTCKDR+++RH PH LIEG +IA +A+GA  A
Sbjct: 93  TGIKWSFMKRPFDGRPKYLCINADEGEPGTCKDREVIRHHPHKLIEGALIAGYAMGARAA 152

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A+ E Y +G +G NS   GY  D+ +H GAGAYICGEETAL+E
Sbjct: 153 YIYIRGEFYNEACILQEAIHEAYKAGFIGKNSCDTGYSFDVFIHRGAGAYICGEETALIE 212

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTVNN+E+IA  P I +RGA WYS FGRE N GTK
Sbjct: 213 SIEGKQGKPRLKPPFPADIGLFGCPTTVNNIETIASAPAICKRGAEWYSSFGRERNHGTK 272

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHV  PCTVEE MSI   ELIE+HCGG+ GGWDNL+A+IPGGSSVP +P      
Sbjct: 273 LYCISGHVVNPCTVEEEMSIPLKELIERHCGGVIGGWDNLMAIIPGGSSVPMIPKDICET 332

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD L  + +GLGTAAVIVM++  DI+K I RLS FY+HESCGQCTPCREGT W+  
Sbjct: 333 VLMDYDALIAVQTGLGTAAVIVMNKEVDIVKCIARLSHFYRHESCGQCTPCREGTKWLNS 392

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R VKG A+  EID L+E+SK IE  TICALGDAAAWPIQGLI++FRP IE RI  Y 
Sbjct: 393 VMWRFVKGQAKPSEIDSLWEISKQIEAHTICALGDAAAWPIQGLIRHFRPEIEHRISDYC 452

Query: 421 RCN 423
             N
Sbjct: 453 AKN 455


>gi|323508270|emb|CBQ68141.1| probable NADH2 dehydrogenase (ubiquinone) flavoprotein 1
           [Sporisorium reilianum]
          Length = 508

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 265/426 (62%), Positives = 326/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N Y      L  + +RG W     IL KG DWII+++K SG+RGRGGAGF 
Sbjct: 49  LRDQDRIFQNAYMRHDHGLKGAKARGDWHRTKDILLKGHDWIISQMKESGMRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K   +   RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 109 SGLKWSFMNKPGWEKDPRPRYLVINADEGEPGTCKDREIMRGDPHKLIEGCLVAGRAMNA 168

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IYVRGEF  E   LQ A+ E YA GL+G N+   GYD D+ VH GAGAYICGEETA
Sbjct: 169 NAAYIYVRGEFYLEVAHLQHAIKEAYADGLIGKNACGSGYDFDVYVHKGAGAYICGEETA 228

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++A  PTI+RRG +W++GFGR+ N+
Sbjct: 229 LIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAAAPTIIRRGPAWFAGFGRDKNQ 288

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF+ISGHVN PC VEE MSI   ELIE+HCGG+RGGWDNLL ++PGGSSVP LP  +
Sbjct: 289 GTKLFAISGHVNTPCVVEEEMSIPLQELIERHCGGVRGGWDNLLGIVPGGSSVPILPKHK 348

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D L+E  S LGT AVIVMD++TD+++AI R + FYKHESCGQCTPCREGT W
Sbjct: 349 CEQVLMDFDSLRENQSSLGTGAVIVMDKTTDVVQAISRFAKFYKHESCGQCTPCREGTTW 408

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +MER  +G    REID++ E++K +EG TICAL DAAAWPIQGL++ FRP IEER+ 
Sbjct: 409 LANMMERFEEGRGNLREIDMIQELTKQMEGHTICALADAAAWPIQGLLRWFRPEIEERMR 468

Query: 418 QYHRCN 423
            Y   N
Sbjct: 469 LYQEKN 474


>gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
 gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
          Length = 599

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 163/426 (38%), Positives = 248/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T Q +I T NL  +   S+ + ++R  +  + K + E   + +I+EVK S LRGRGGA
Sbjct: 111 FFTKQVKIATRNLGVIDPLSIDEYIARDGYFALHKAIKEMTPEEVISEVKKSELRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F+ K   D   Y++ NADE +PG   DR I+  +PH+++E   IA++A+GA
Sbjct: 171 GFPTGLKWEFVRKAKGDI-KYVICNADEGDPGAFMDRAILEGDPHSVVEAMTIAAYAVGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+    E    A++     G LG N    G+  DI +  GAGA++CGEETA
Sbjct: 230 QKGFIYVRAEYPLAIERFSKALETAREYGFLGKNILGTGFSFDIEIRIGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR+KPP+PA  GL+G PT +NNVE+ A +  I+  G  W++ +G E +R
Sbjct: 290 LINSIEGKRGVPRVKPPYPATYGLWGKPTLINNVETYANIAPIILHGGDWFAQYGVEGSR 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M IT  ELI +  GG+      L AV  GG S  C+P   
Sbjct: 350 GTKVFALAGKIKNTGLVEVPMGITLRELIYEIGGGVP-DGKKLKAVQTGGPSGGCIPEEH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + YD LK++G+ +G+  +IVMD    ++        F   ESCGQCTPCR+GT  
Sbjct: 409 L-DTPITYDNLKKLGTIIGSGGMIVMDEDDCMVDVAKFFLEFTVEESCGQCTPCRDGTKK 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G   + ++++L E+ ++I   ++C LG  A  P+   ++ F       + 
Sbjct: 468 MLEILEKITAGEGTEEDLEVLKELGEHIMKTSLCGLGQTAPQPVVSTMRYFWDEYIAHVK 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|310800932|gb|EFQ35825.1| NADH oxidoreductase [Glomerella graminicola M1.001]
          Length = 477

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 268/422 (63%), Positives = 330/422 (78%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG    +L+ +   G W    +I+ KG DWII+EVKASGLRGRGGAGF 
Sbjct: 27  LKDQDRIFQNLYGRMPPTLASAKKMGDWHKTKEIILKGHDWIISEVKASGLRGRGGAGFP 86

Query: 62  TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM        D+P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 87  SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 146

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF+ E   LQ A++E Y  GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 147 SAAYIYIRGEFVHEAAVLQNAINEAYKDGLIGKNACNSGYDFDVFIHRGAGAYVCGEETS 206

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG +W++GFGRE N+
Sbjct: 207 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGNWFAGFGRERNQ 266

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN P TVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 267 GTKLFCISGHVNNPVTVEEEMSIPLRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKNV 326

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREG+ W
Sbjct: 327 CDNQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYAHESCGQCTPCREGSKW 386

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  + REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E+R++
Sbjct: 387 TDQIMKRFEKGQGRPREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEKRME 446

Query: 418 QY 419
           +Y
Sbjct: 447 EY 448


>gi|119500302|ref|XP_001266908.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Neosartorya
           fischeri NRRL 181]
 gi|119415073|gb|EAW25011.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Neosartorya
           fischeri NRRL 181]
          Length = 496

 Score =  529 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 274/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LRDQDRIFTNLYGHHGADLKSAMKFGDWHRTKDIVLKGHDWLISEIKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +PH LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FG E N 
Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFSSFGAERNS 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSI 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  +GLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 347 CDNQIMDFDSLKDSQTGLGTAAVIVMDKSTDIVRAISRLSKFYKHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 407 TAQMMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466

Query: 418 QYHR 421
           +Y R
Sbjct: 467 EYER 470


>gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 602

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 164/426 (38%), Positives = 248/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q +I T N+  +  K++ + ++R  +  + K L E   + +I  VK SGLRGRGGA
Sbjct: 111 FFSRQVKIATRNVGIIDPKNIDEYIARDGYFALHKALKEMTPEEVIQVVKDSGLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   Y++ NADE +PG   DR I+  +PHT+IE   IA +AIGA
Sbjct: 171 GFPTGLKWEFARKSPGD-EKYMICNADEGDPGAFMDRSILEGDPHTIIEAMTIAGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F+YVR E+    E L  A+++    G LG N     +  DI +  GAGA++CGEETA
Sbjct: 230 TKGFVYVRAEYPIAIERLTVALNQAREYGFLGENILGTDFSFDIEIRIGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+GQPR+KPPFPA  GL+G P+ +NNVE++A VP I+  GASW+  +G E + 
Sbjct: 290 LMHSIEGKRGQPRVKPPFPAQKGLWGKPSNINNVETLACVPPIIYNGASWFRQWGTEKSP 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     VE  M IT  ELI +  GG   G   + AV  GG S   +P   
Sbjct: 350 GTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGSPTG-KKIKAVQTGGPSGGVIPEEY 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+ L+++G+ +G+  +IV+D    ++        F   ESCG+CTPCREGT  
Sbjct: 409 -FDTPVDYESLQKLGAIVGSGGLIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTKK 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  +++++ KG   + +I++L  +   I+  ++C LG  A  P+   ++ ++      + 
Sbjct: 468 MYEILDKITKGEGTEEDIEILENLGNVIKDSSLCGLGQTAPNPVLSTLRYYKDEYIAHVK 527

Query: 418 QYHRCN 423
           +  +C 
Sbjct: 528 E-GKCP 532


>gi|221105450|ref|XP_002162472.1| PREDICTED: similar to GF15407 [Hydra magnipapillata]
          Length = 470

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 263/420 (62%), Positives = 324/420 (77%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D DRIFTNLYG     L  + +RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 40  LSDDDRIFTNLYGRHDWKLKGAQARGDWYKTKEIILKGHDWILNEIKTSGLRGRGGAGFP 99

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 100 SGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGARAA 159

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 160 YIYIRGEFYNEASNMQVAIQEAYKAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIE 219

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA++G++GCPTTV NVE++AV P I RRG SW++  GR  N G K
Sbjct: 220 SLEGKQGKPRLKPPFPADIGVFGCPTTVANVETVAVAPEICRRGGSWFASMGRPRNSGQK 279

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MSI   ELIE+H GG+ GGWDNLL +IPGGSS P +P      
Sbjct: 280 LFNISGHVNHPCTVEEEMSIPLKELIERHAGGVLGGWDNLLCIIPGGSSTPLIPKKVCED 339

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +GLGTAA+IVM++ +D+++ I RL  FYKHESCGQCTPCREG GWM  
Sbjct: 340 VLMDFDDLIRAQTGLGTAAIIVMNKQSDVVRCIARLIEFYKHESCGQCTPCREGVGWMNN 399

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M+R V G A+  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRPL+EER  QY 
Sbjct: 400 IMKRFVDGKAKSAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPLLEERFAQYQ 459


>gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
 gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
          Length = 626

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +    ++ + K+L     D +I  +  SGLRGRGGA
Sbjct: 140 FYKKQKRIALRNCGVINPENIEEYIGTSGYEALGKVLTTMTPDDVIQVILDSGLRGRGGA 199

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F     ++   Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA
Sbjct: 200 GFPTGLKWKFAKGNQAE-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMTIAGYAIGA 258

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L+ A+ +    G+LG +    G+D DI +  GAGA++CGEETA
Sbjct: 259 SQGYIYVRAEYPIAIERLEIAIRQAREYGMLGKDIFGSGFDFDIDLRLGAGAFVCGEETA 318

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+ +G  W+ G G E ++
Sbjct: 319 LMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETWANIPQIILKGPEWFVGMGTEKSK 378

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G ++    VE  M  T  E++E+  GGI        A   GG S  C+PA  
Sbjct: 379 GTKVFALGGKIHNTGLVEIPMGTTLREIVEEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 437

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L E+GS +G+  +IVMD +T ++        F   ESCG+CTPCR GT  
Sbjct: 438 L-DVPIDYDNLMEIGSMMGSGGLIVMDENTCMVDIAKFFLEFTVDESCGKCTPCRIGTRR 496

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++ KG A   ++D L E+  +++  ++CALG  A  P+   ++ FR      I 
Sbjct: 497 MLELLDKITKGQATMEDLDKLEELCYHLKDNSLCALGQTAPNPVLSTLRYFRDEYIAHIV 556

Query: 418 QYHRCN 423
              +C 
Sbjct: 557 D-KKCP 561


>gi|325187212|emb|CCA21752.1| ubiquinone oxidoreductase putative [Albugo laibachii Nc14]
          Length = 502

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 267/419 (63%), Positives = 318/419 (75%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG +   +  ++ RG W     +L  G +WII EVK SGLRGRGGAGF 
Sbjct: 45  LKDEDRIFTNLYGEKTWRIDGALKRGDWYRTKDLLCMGPEWIIQEVKDSGLRGRGGAGFP 104

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP +LVVNADESEPGTCKDR+IMR +PH L+EGC++A FA+ A  A
Sbjct: 105 SGLKWSFMPKQTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLVAGFAMRARAA 164

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   L+ A+ E Y  G LG NS   GYD D+ +H GAGAYICGEET+LLE
Sbjct: 165 YIYIRGEFFNEAVILEEAIHEAYQKGFLGVNSCGSGYDFDVYLHRGAGAYICGEETSLLE 224

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG SW++  GR+NN GTK
Sbjct: 225 SLEGKQGKPRLKPPFPANTGLYGCPTTVTNVETVAVSPTILRRGGSWFASLGRKNNSGTK 284

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   +LIEKHCGG+RGGW NL A IPGGSSVP L     + 
Sbjct: 285 LFCISGHVNNPCTVEEEMSIPLKDLIEKHCGGVRGGWGNLQACIPGGSSVPVLDEELCQD 344

Query: 301 AIMDYDGLKEM-GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            +MD+D LK   GSGLGTAAV + D+S D++ AI RL+ FY HESCGQCTPCREGTGWM 
Sbjct: 345 IMMDFDDLKNRGGSGLGTAAVTIFDKSVDMVAAIRRLAHFYTHESCGQCTPCREGTGWME 404

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++ ++ KG A   EI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+  I ERI+ 
Sbjct: 405 AILVKMEKGEADLEEIPMLEEISRQIEGHTICALGDAAAWPVQGLIRKFKHKIIERIED 463


>gi|189191100|ref|XP_001931889.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973495|gb|EDU40994.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 500

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 262/419 (62%), Positives = 320/419 (76%), Gaps = 4/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +   G W    +IL KG +WII+E+KASGLRGRGGAGF 
Sbjct: 57  LKDQDRIFQNLYGHHGADLKSAQKYGDWYKTKEILLKGHEWIISEIKASGLRGRGGAGFP 116

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KW +          YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A  A
Sbjct: 117 SGLKWDWDKDSKP---RYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNATAA 173

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAY+CGEET+L+E
Sbjct: 174 YIYIRGEFYHEATVLQRAIQEAYQAGLIGKNACGSGYDFDVYLHRGMGAYVCGEETSLIE 233

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+GTK
Sbjct: 234 SLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQGTK 293

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L++ISGHVN PC VEE MSI   +LIEKHCGG+RGGWDNL AVIPGGSS P LP      
Sbjct: 294 LYAISGHVNRPCVVEEEMSIPLRDLIEKHCGGVRGGWDNLKAVIPGGSSTPILPKHICDD 353

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK+  SG GTAAVIVMD+STD+++AI RL+ FY HESCGQCTPCREG+ W  +
Sbjct: 354 QLMDFDALKDSQSGFGTAAVIVMDKSTDVVRAITRLAKFYHHESCGQCTPCREGSKWTHQ 413

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +M+R  KG A++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E RI  Y
Sbjct: 414 IMDRFYKGQAREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARIKDY 472


>gi|54650938|gb|AAV37047.1| AT08270p [Drosophila melanogaster]
          Length = 702

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +M RG W    +I+ KG  WI+NE+K SGLRGRGGAGF 
Sbjct: 258 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 317

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA+  
Sbjct: 318 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 377

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+RGEF  E  +LQ A+ E Y +G LG N+   G+D D+ V  GAGAYICGEET+L+E
Sbjct: 378 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 437

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 438 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 497

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV  PCTVEE MS+   ELIE+H GG+ GGWDNLLA+IPGGSS PC+       
Sbjct: 498 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 557

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AI DYDGL  + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG  W+  
Sbjct: 558 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 617

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +M R V G AQ  EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI +
Sbjct: 618 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 675


>gi|219667454|ref|YP_002457889.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
 gi|219537714|gb|ACL19453.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
          Length = 597

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 163/424 (38%), Positives = 249/424 (58%), Gaps = 6/424 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q RI   N   +    L D ++   ++ + K L    + I+ EVK SGLRGRGGAG
Sbjct: 112 FFAKQTRIALKNCGFIDPTKLDDYLAHKGYEGLKKALTMDPEAIVEEVKESGLRGRGGAG 171

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           FSTG+KWS      SD   Y++ NADE +PG   DR ++  +PH +IEG +I ++AIGA 
Sbjct: 172 FSTGLKWSLCRATPSD-KKYVICNADEGDPGAFMDRGLLEGDPHAIIEGMLIGAYAIGAD 230

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y R E+    ++LQ A+ +   +G LG+N    G++  + ++ GAGA++CGEETAL
Sbjct: 231 EGYVYCRAEYPLAIKNLQIAIKQAEEAGFLGNNILGSGFNFHLKINAGAGAFVCGEETAL 290

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR++PPFPA  GL+G PT +NNVE+ + +P ILR GA WY+ +G E ++G
Sbjct: 291 MASIEGKRGMPRVRPPFPAQSGLWGKPTNINNVETWSNIPHILRNGAQWYAQYGTEKSKG 350

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G VN    VE  M +   ++I    G          AV  GG S  CLP   M
Sbjct: 351 TKIFALTGKVNNTGLVEVPMGMPLRDIIFDIGG-GIKDGGKFKAVQIGGPSGGCLPED-M 408

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L + G+ +G+  +++MD +T ++        F + ESCG+CTPCREG   M
Sbjct: 409 LDLPVDYDTLTKAGAMVGSGGLVIMDETTCMVDIARFFLNFSQSESCGKCTPCREGNKRM 468

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +++R+ +G  ++ +I+ L  ++  ++  ++C LG  A  PI   +K FR   EE I  
Sbjct: 469 WEILDRITRGEGREDDIEKLETLAYTVKETSLCGLGQNAPNPILATLKYFREEFEEHI-H 527

Query: 419 YHRC 422
             +C
Sbjct: 528 AKKC 531


>gi|254693013|gb|ACT79356.1| MIP04331p [Drosophila melanogaster]
          Length = 704

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +M RG W    +I+ KG  WI+NE+K SGLRGRGGAGF 
Sbjct: 260 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 319

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA+  
Sbjct: 320 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 379

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+RGEF  E  +LQ A+ E Y +G LG N+   G+D D+ V  GAGAYICGEET+L+E
Sbjct: 380 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 439

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 440 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 499

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV  PCTVEE MS+   ELIE+H GG+ GGWDNLLA+IPGGSS PC+       
Sbjct: 500 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 559

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AI DYDGL  + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG  W+  
Sbjct: 560 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 619

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +M R V G AQ  EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI +
Sbjct: 620 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 677


>gi|164662034|ref|XP_001732139.1| hypothetical protein MGL_0732 [Malassezia globosa CBS 7966]
 gi|159106041|gb|EDP44925.1| hypothetical protein MGL_0732 [Malassezia globosa CBS 7966]
          Length = 509

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 262/422 (62%), Positives = 332/422 (78%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +++RG W     I+E+G ++IIN++KASG+RGRGGAGF 
Sbjct: 43  LRDQDRIFQNLYGQHDFRLKGALARGDWHRTRDIIERGHEFIINQMKASGIRGRGGAGFP 102

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +GMKWSFM K   +   RP YLV+NADE EPGTCKDR+IMRH+PH LIEGC++A  A+GA
Sbjct: 103 SGMKWSFMLKPGWEKDPRPRYLVINADEGEPGTCKDREIMRHDPHKLIEGCLVAGRAMGA 162

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E  +LQ A++E Y +GL+G N+   GYD D+ VH GAGAYICGEETA
Sbjct: 163 NAAYIYIRGEFFLEAYNLQVAINEAYKAGLIGKNACGSGYDFDVYVHRGAGAYICGEETA 222

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK+G+PR+KPPFPA+ G++GCPTTV NVE+++V PTI+RRG  W++ FGRE N 
Sbjct: 223 LIESLEGKQGKPRMKPPFPADTGVFGCPTTVANVETVSVAPTIIRRGPEWFASFGRERNH 282

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL++ISGHVN PC VEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 283 GTKLYAISGHVNRPCVVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSTPMIPKEV 342

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D L++  S LGT AVIVMD+STD++KAI RL+ FY HESCGQCTPCREGT W
Sbjct: 343 CERTLMDFDSLRDNQSALGTGAVIVMDKSTDLVKAIARLTKFYHHESCGQCTPCREGTAW 402

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +M R   G A  REID+++E+++ +EG TIC L DA+AWPIQGL+++FRP++EERI 
Sbjct: 403 LDSMMTRFENGRASLREIDMIWEITRQMEGHTICGLADASAWPIQGLLRHFRPVVEERIK 462

Query: 418 QY 419
           +Y
Sbjct: 463 EY 464


>gi|15603992|ref|NP_220507.1| NADH dehydrogenase I subunit F [Rickettsia prowazekii str. Madrid
           E]
 gi|7387969|sp|Q9ZE33|NUOF_RICPR RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|3860683|emb|CAA14584.1| NADH DEHYDROGENASE I CHAIN F (nuoF) [Rickettsia prowazekii]
 gi|292571708|gb|ADE29623.1| NADH dehydrogenase I chain F [Rickettsia prowazekii Rp22]
          Length = 421

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 289/420 (68%), Positives = 336/420 (80%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNLYG Q   L  S  RG W N   +++KGRD+II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLYGQQSYDLKSSQKRGDWYNTKALIDKGRDFIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC+IASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANT 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNMQRALDEAYKEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC +EE M +   ELIEK+ GG+RGGW+NL A+IPGG+SVP LP   + 
Sbjct: 240 KVFCISGHVNKPCNIEEVMGVPLKELIEKYAGGVRGGWNNLKAIIPGGASVPLLPKS-LC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVEMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLV G A+K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE+RI  +
Sbjct: 359 RVMMRLVNGNAKKNEIDTLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEQRIKSF 418


>gi|290988111|ref|XP_002676765.1| predicted protein [Naegleria gruberi]
 gi|284090369|gb|EFC44021.1| predicted protein [Naegleria gruberi]
          Length = 480

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 266/421 (63%), Positives = 331/421 (78%), Gaps = 2/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLY    + +  +M RG W     ++ KG DWII+++K SGLRGRGGAGF+
Sbjct: 46  LKDKDRIFTNLYENFDRHIDGAMKRGDWFKTKDLINKGPDWIIDQIKKSGLRGRGGAGFN 105

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+K+SFMPK   D    YLV+N+DESEPGTCKDR+I+R++PH L+EG ++  F + A  
Sbjct: 106 SGLKYSFMPKSNPDGRPSYLVINSDESEPGTCKDREIVRNDPHKLVEGALLVGFGMRARA 165

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   LQ A+DE Y  G LG N+   GY+ D+ VH GAGAYICGEETAL+
Sbjct: 166 AYIYIRGEFYNESRRLQEAIDEAYQKGFLGKNACGTGYEFDVYVHRGAGAYICGEETALI 225

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G+PRLKPPFPA VGL+ CPTTV NVE++AVVPTILRR   W++GFGR+NN GT
Sbjct: 226 ESIEGKQGKPRLKPPFPAGVGLFSCPTTVTNVETVAVVPTILRRSPEWFAGFGRKNNAGT 285

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL++ISGHVN PC VEE MSI   ELIE+H GG+RGGWDNLLA+IPGGSSVP +P     
Sbjct: 286 KLYAISGHVNTPCVVEEEMSIPLKELIERHAGGVRGGWDNLLAIIPGGSSVPLIPKEICE 345

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+E+ SGLGTAAV+VMD+STDI+ AI RLS FY HESCGQCTPCREGTGW++
Sbjct: 346 TVLMDFDALREVQSGLGTAAVMVMDKSTDIVDAIARLSKFYAHESCGQCTPCREGTGWLL 405

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            +M+R+VKG A+  EID L EVS+ IEG TICALGDAAAWP+QGLI++FR  +E+RI +Y
Sbjct: 406 NMMDRMVKGNAEIEEIDTLEEVSRQIEGHTICALGDAAAWPVQGLIRHFRGEMEDRIKKY 465

Query: 420 H 420
            
Sbjct: 466 K 466


>gi|51473234|ref|YP_066991.1| NADH dehydrogenase I subunit F [Rickettsia typhi str. Wilmington]
 gi|81390307|sp|Q68XY3|NUOF_RICTY RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|51459546|gb|AAU03509.1| NADH dehydrogenase (ubiquinone) subunit F [Rickettsia typhi str.
           Wilmington]
          Length = 421

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 292/420 (69%), Positives = 336/420 (80%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IF NLYG Q   L  S  RG W N   +L+KGRD+II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFINLYGQQSYDLKSSKKRGDWYNTKALLDKGRDFIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC+IASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNMQRALDEAYTEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC +EE+M I   ELIEK+ GG+RGGWDNL A+IPGG+SVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNIEEAMGIPLKELIEKYAGGVRGGWDNLKAIIPGGASVPLLPKS-LC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +GSGLGT  +IVMDRSTDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVEMDFDSLRTVGSGLGTGGIIVMDRSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLV G A+K EI+ L  V+K IEG TICALGDAAAWPIQGLI++FR  IEERI  +
Sbjct: 359 RVMMRLVNGNAKKTEIETLLNVTKEIEGHTICALGDAAAWPIQGLIRHFRDEIEERIKNF 418


>gi|296116530|ref|ZP_06835140.1| NADH dehydrogenase I subunit F [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976742|gb|EFG83510.1| NADH dehydrogenase I subunit F [Gluconacetobacter hansenii ATCC
           23769]
          Length = 441

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 285/421 (67%), Positives = 338/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTNLYG     L+ +  RG W++   IL +GRD II E+KASGLRGRGGAGF
Sbjct: 1   MLEDKDRIFTNLYGQNDWRLAGARQRGDWNDTAAILARGRDAIIAEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLV+N DESEPGTCKDR+I+RH+PH LIE  +IASFA+GAH 
Sbjct: 61  PTGVKWSFMPKTSDGRPHYLVINGDESEPGTCKDREILRHDPHKLIESALIASFAMGAHK 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGEF  E + LQ A++E Y +GL+G N+   G+D D  +H GAGAYICGEETALL
Sbjct: 121 SYIYIRGEFFNEAQHLQHAIEEAYEAGLIGPNAAGSGWDFDFYIHRGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR+KPPFPA +GLYGCPTTVNNVESIAV  TILRRGA+W+SG GR NN GT
Sbjct: 181 ESLEGKKGQPRMKPPFPAAMGLYGCPTTVNNVESIAVTSTILRRGAAWFSGLGRPNNAGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +ISGHVN PC  EE + +   ++IEKH GG+RGGWDNLLAVIPGG SVP LP     
Sbjct: 241 KLMAISGHVNTPCVFEEELGVPLRDIIEKHGGGVRGGWDNLLAVIPGGCSVPMLPREVCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD L+  GSGLGTA +IVMD+STDII+AI R S F+KHESCGQCTPCREGTGWMM
Sbjct: 301 TVLMDYDSLRAEGSGLGTACMIVMDKSTDIIRAIARFSQFFKHESCGQCTPCREGTGWMM 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM+R+V+G A+  EID+L +V++ +EG TICALGDAAAWPIQGLI+ FRP++EERI  Y
Sbjct: 361 RVMQRMVEGRAEIEEIDMLEQVTRQVEGHTICALGDAAAWPIQGLIRRFRPVMEERIHAY 420

Query: 420 H 420
            
Sbjct: 421 K 421


>gi|45550452|ref|NP_611238.2| CG11423 [Drosophila melanogaster]
 gi|45445490|gb|AAF57825.3| CG11423 [Drosophila melanogaster]
          Length = 702

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 1/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +M RG W    +I+ KG  WI+NE+K SGLRGRGGAGF 
Sbjct: 258 LADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRGRGGAGFP 317

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP +LVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA+  
Sbjct: 318 SGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGANTG 377

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+RGEF  E  +LQ A+ E Y +G LG N+   G+D D+ V  GAGAYICGEET+L+E
Sbjct: 378 FIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIE 437

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PR KPPFPA++G++GCP+TV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 438 SLEGKAGKPRNKPPFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTK 497

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV  PCTVEE MS+   ELIE+H GG+ GGWDNLLA+IPGGSS PC+       
Sbjct: 498 LFNISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASS 557

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AI DYDGL  + S +GT A+IVM++ TDIIKAI RLS FYKHESCGQCTPCREG  W+  
Sbjct: 558 AIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNM 617

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +M R V G AQ  EID+L+E++K IEG TICAL D AAWP QGLI+NFRP+IEERI +
Sbjct: 618 IMHRFVTGQAQIAEIDMLFELTKQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK 675


>gi|302407582|ref|XP_003001626.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261359347|gb|EEY21775.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 477

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 270/426 (63%), Positives = 326/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NL G    +L+ +   G W    +IL KG +WII+EVKASGLRGRGGAGF 
Sbjct: 28  LKDSDRIFQNLNGRLPPTLASAKKMGDWHKTKEILAKGHEWIISEVKASGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 88  SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 147

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y  GL+G N+   GYD D+ VH GAGAY+CGEET+
Sbjct: 148 TAAYIYIRGEFYHEAAVLQTAINEAYKDGLIGKNACGSGYDFDVYVHRGAGAYVCGEETS 207

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG +W++GFGRE N+
Sbjct: 208 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGNWFAGFGRERNQ 267

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN P TVEE MSI   ELIEKHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 268 GTKLFCISGHVNNPVTVEEEMSIPLRELIEKHCGGVRGGWDNLLAVIPGGSSTPILPKDV 327

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD+++AI RLS FY HESCGQCTPCREG+ W
Sbjct: 328 CDNQLMDFDALKDSQSGLGTAAVIVMDKSTDVVRAISRLSHFYAHESCGQCTPCREGSKW 387

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  + REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E R+ 
Sbjct: 388 TDQIMKRFEKGQGRPREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARMA 447

Query: 418 QYHRCN 423
           +Y   N
Sbjct: 448 EYAAQN 453


>gi|121707889|ref|XP_001271969.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           clavatus NRRL 1]
 gi|119400117|gb|EAW10543.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           clavatus NRRL 1]
          Length = 496

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 273/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LRDQDRIFTNLYGHHGADLKSAMKFGDWHRTKDIVNKGDDWLISEIKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLV+NADE EPGTCKDR+IMR +PH LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKGWDKDPRPRYLVINADEGEPGTCKDREIMRKDPHKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 167 NAAYIYIRGEFYHEATVLQQAINEAYQAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW++ FG E N 
Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVCPTIMRRGASWFNSFGAERNS 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKAV 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               IMD+D LK+  SGLGTAAVIVMD+STDII+AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 347 CDDQIMDFDSLKDSQSGLGTAAVIVMDKSTDIIRAISRLSKFYKHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++MER+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 407 TAQIMERMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466

Query: 418 QYHR 421
           +Y +
Sbjct: 467 EYEQ 470


>gi|67538918|ref|XP_663233.1| NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial precursor (Complex I-51KD) (CI-51KD)
           [Aspergillus nidulans FGSC A4]
 gi|40743532|gb|EAA62722.1| NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial precursor (Complex I-51KD) (CI-51KD)
           [Aspergillus nidulans FGSC A4]
 gi|259484902|tpe|CBF81519.1| TPA: NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 497

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 270/422 (63%), Positives = 332/422 (78%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LKDQDRIFTNLYGHHGADLKSAMKYGDWYRTKDIVLKGHDWLISELKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 167 NAAYIYIRGEFYHEATVLQQAINEAYQAGLIGKNACGTGYDFDVFIHRGMGAYVCGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW++GFGRE N 
Sbjct: 227 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFAGFGRERNA 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNL AVIPGGSS P +P   
Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLKAVIPGGSSTPIIPKSV 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  +GLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 347 CDDQLMDFDALKDSQTGLGTAAVIVMDKSTDVVRAISRLSTFYKHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++M+RL KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 407 TLQMMQRLEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIK 466

Query: 418 QY 419
           +Y
Sbjct: 467 EY 468


>gi|51947519|gb|AAU14244.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Euplotes sp.
           BB-2004]
          Length = 470

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 266/423 (62%), Positives = 321/423 (75%), Gaps = 1/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY      +  ++ RG W     I+  G DWII+++KASGLRGRGGAGF 
Sbjct: 32  LQDQDRIFTNLYRDGDPFIDGALKRGDWHKTKDIVLNGDDWIIDQIKASGLRGRGGAGFP 91

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+K+SFMPKV   RP YLV+NADESEPGTCKDR+IMRH+PH LIEG +    ++ A  A
Sbjct: 92  SGLKYSFMPKVSDGRPSYLVINADESEPGTCKDREIMRHDPHKLIEGALCVGVSMRAKAA 151

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  +   L+ A+ E Y  GL+G N+   GYD D+ V HGAGAYICGEET L+E
Sbjct: 152 YIYIRGEFWYQYNCLERAISEAYERGLIGKNACGTGYDFDVHVVHGAGAYICGEETGLIE 211

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PR+KPPFPAN GLYGCPTTV NVE++AV PTILRR   W++ FGR+NN GTK
Sbjct: 212 SLEGKQGKPRMKPPFPANAGLYGCPTTVTNVETVAVCPTILRRTPEWFASFGRKNNAGTK 271

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF++SGHVN P   EE MSI   ELIEKHCGG+ GGWDNL A+IPGGSSVP LP      
Sbjct: 272 LFAVSGHVNNPGVFEEEMSIPLRELIEKHCGGVTGGWDNLKAIIPGGSSVPLLPKRICDD 331

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+++ SGLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREGT WM  
Sbjct: 332 VLMDFDALRDVRSGLGTAAVIVMDKSTDVIAAIHRLSKFYAHESCGQCTPCREGTSWMED 391

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ KG A   EID+L E+S  IEG TICALGDAAAWP+QGLI++FR  +E+RI+ Y 
Sbjct: 392 MLGRMRKGNADFAEIDMLEELSYQIEGHTICALGDAAAWPVQGLIRHFRHEMEDRIEDYK 451

Query: 421 RCN 423
             N
Sbjct: 452 AEN 454


>gi|239948357|ref|ZP_04700110.1| NADH-quinone oxidoreductase subunit F [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922633|gb|EER22657.1| NADH-quinone oxidoreductase subunit F [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 417

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 293/418 (70%), Positives = 336/418 (80%), Gaps = 3/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG W+N   +L+KGRD+II EVK SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGQQSHDLKSSKKRGDWENTKALLDKGRDFIIEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGAND 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y  GL+G N+   G+  +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNETSNIQRALDEAYKEGLIGKNACGSGFYCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRRGASW++G G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+R GWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRDGWDNLKAIIPGGSSVPLLPKS-LC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+  GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTAGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           RVM RLVKG A+K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IEERI 
Sbjct: 359 RVMMRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIK 416


>gi|225682624|gb|EEH20908.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 515

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 269/424 (63%), Positives = 327/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  ++  G W    +I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 65  LKDQDRIFQNLYGHHGADLKTAIKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA  A+ A
Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYLHRGMGAYICGEETS 244

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI 
Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484

Query: 418 QYHR 421
            Y +
Sbjct: 485 NYEQ 488


>gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Coprococcus catus GD/7]
          Length = 594

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 161/422 (38%), Positives = 236/422 (55%), Gaps = 6/422 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q R+   N   +  +S+ + +  G ++ + ++L E   D +I  + ASGLRGRGGAGF T
Sbjct: 111 QHRVALRNCGIINPESIDEYIGTGGYEALGRVLTEMSPDDVIETILASGLRGRGGAGFPT 170

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F      +   Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA   +
Sbjct: 171 GMKWKFASGNRGNVQKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGASQGY 230

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    E L  A+ +    GLLG N    G+D DI +  GAGA++CGEETAL+ S
Sbjct: 231 IYVRAEYPIAVERLNIAIKQAREYGLLGKNIFDSGFDFDIDLRLGAGAFVCGEETALMTS 290

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+  GA W++  G E ++GTK+
Sbjct: 291 IEGNRGEPRPRPPFPAVKGLFASPTILNNVETYANIPQIILNGAEWFASMGTEKSKGTKV 350

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G +N    VE  M  T   +IE   GGI        A   GG S  C+PA  M   
Sbjct: 351 FAVNGKINNTGLVEVPMGTTLRTIIEDIGGGIP-NGKKFKAAQTGGPSGGCIPAEHM-DI 408

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DYD L  +GS +G+  +IVMD  T ++        F   ESCG+CTPCR GT  +  +
Sbjct: 409 PIDYDNLISIGSMMGSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCTPCRVGTKRLYEM 468

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++++ KG     ++D + E+   I+   +C LG  A  P+   ++ FR      I    +
Sbjct: 469 LDKITKGEGTLEDLDKMEELCYYIKDNALCGLGQTAPNPVLSTLRYFRDEYIAHIVD-KK 527

Query: 422 CN 423
           C 
Sbjct: 528 CP 529


>gi|296425638|ref|XP_002842347.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638611|emb|CAZ86538.1| unnamed protein product [Tuber melanosporum]
          Length = 499

 Score =  528 bits (1360), Expect = e-148,   Method: Composition-based stats.
 Identities = 267/426 (62%), Positives = 327/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W    +IL KG DWII E+K SGLRGRGGAGF 
Sbjct: 50  LKDQDRIFQNLYGHHGTDLKSAMKYGDWYKTKEILLKGHDWIIGEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +GMKWSFM     +    P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 110 SGMKWSFMTPPGWNTGTTPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMEA 169

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y++GL+G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 170 TAAYIYIRGEFYHEATVLQRAIQEAYSAGLIGKNACGSGYDFDVFVHRGMGAYVCGEETS 229

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA+VGL+GCP+TV NVE+++V PTI RRG SW++ FGR+ N 
Sbjct: 230 LIESLEGKPGKPRLKPPFPASVGLFGCPSTVANVETVSVAPTICRRGGSWFASFGRKRNE 289

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNL A+IPGGSS P LP   
Sbjct: 290 GTKLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLQAIIPGGSSTPILPRKI 349

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK++ SGLGTAAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGT W
Sbjct: 350 CDDVLMDFDALKDVQSGLGTAAVIVMDKSTDVVRAISRLSKFYKHESCGQCTPCREGTRW 409

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++MER  KG  ++REID+L E++K +EG TICALG+A AWP+QGLI++FRP +E R+ 
Sbjct: 410 TAQIMERFEKGQGREREIDMLQELTKQVEGHTICALGEAFAWPLQGLIRHFRPELEARMQ 469

Query: 418 QYHRCN 423
            + + +
Sbjct: 470 AHAQAS 475


>gi|295669264|ref|XP_002795180.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
 gi|226285114|gb|EEH40680.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides
           brasiliensis Pb01]
          Length = 515

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 270/424 (63%), Positives = 328/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  +M  G W    +I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 65  LKDQDRIFQNLYGHHGADLKTAMKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA  A+ A
Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYIHRGMGAYICGEETS 244

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI 
Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484

Query: 418 QYHR 421
           +Y +
Sbjct: 485 KYEQ 488


>gi|226290045|gb|EEH45529.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 515

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 269/424 (63%), Positives = 327/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG  G  L  ++  G W    +I+ KG DWII+E+KASGLRGRGGAGF 
Sbjct: 65  LKDQDRIFQNLYGHHGADLKTAIKYGDWYKTKEIVLKGHDWIISEIKASGLRGRGGAGFP 124

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH L+EGC+IA  A+ A
Sbjct: 125 SGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLIAGRAMNA 184

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A+ E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 185 TAAYIYIRGEFYHEATVLQRAIQEAYGAGLIGKNACGTGYDFDVYLHRGMGAYICGEETS 244

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++ FGRE N+
Sbjct: 245 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFASFGRERNQ 304

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 305 GTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGGSSTPILPKHV 364

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 365 CDDQMMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQCTPCREGSKW 424

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  +G A++REID++ E++K +EG TICALG+A +WPIQGLI++FRP +E RI 
Sbjct: 425 TAQMMQRFERGQAREREIDMIQELTKQVEGHTICALGEAFSWPIQGLIRHFRPELEARIR 484

Query: 418 QYHR 421
            Y +
Sbjct: 485 NYEQ 488


>gi|323453876|gb|EGB09747.1| hypothetical protein AURANDRAFT_24188 [Aureococcus anophagefferens]
          Length = 469

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 271/424 (63%), Positives = 331/424 (78%), Gaps = 1/424 (0%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            DQDRIFTNLYG +   L D+  RG W     I+  G DWI+ E+K SGLRGRGGAGF +
Sbjct: 2   KDQDRIFTNLYGEEDWRLGDAKKRGDWHMTKDIMWMGPDWIVQEMKDSGLRGRGGAGFPS 61

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK    RP +LV+NADESEPGTCKDR+IMR +PH L+EGC++A +A+ A   +
Sbjct: 62  GLKWSFMPKASDGRPSFLVINADESEPGTCKDREIMRKDPHKLVEGCLLAGYAMRARACY 121

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+RGE+  E   +  A+ E Y +GL+G N+   GYD D+ +H GAGAY+CGEETAL+ES
Sbjct: 122 IYIRGEYFNEAMVMDEAIHEAYTAGLIGKNACGSGYDFDMYLHRGAGAYVCGEETALIES 181

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK+G+PRLKPPFPANVG++GCPTTV NVE+IAV PTILRRGASW++GFGR+NN GTKL
Sbjct: 182 LEGKQGKPRLKPPFPANVGVFGCPTTVTNVETIAVAPTILRRGASWFTGFGRKNNAGTKL 241

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+ISGHVN P  VEE MSI F ELI+KHCGG+RGGW+ L AVIPGGSSVP LP  +   A
Sbjct: 242 FAISGHVNNPIVVEEEMSIPFRELIDKHCGGVRGGWNKLQAVIPGGSSVPVLPIEECEEA 301

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           +MD+D LK  GSGLGTAAV VMD + D+I AI RL+ FY+HESCGQCTPCREGTGW+  +
Sbjct: 302 LMDFDDLKARGSGLGTAAVTVMDDTVDMIAAIRRLAHFYRHESCGQCTPCREGTGWLETI 361

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +ER+  G A  REI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+P+IEERI     
Sbjct: 362 LERMEVGDADVREIGMLDEISRQIEGHTICALGDAAAWPVQGLIRRFQPVIEERIADPQG 421

Query: 422 CNFQ 425
            +F+
Sbjct: 422 FDFE 425


>gi|3032|emb|CAA39676.1| 51 kD subunit of NADH dehydrogenase (ubiquinone) [Neurospora
           crassa]
          Length = 493

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 270/426 (63%), Positives = 329/426 (77%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +IL KG DWII EVKASGLRGRGGAGF 
Sbjct: 44  LKDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEILLKGHDWIIGEVKASGLRGRGGAGFP 103

Query: 62  TGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM        D+P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 104 SGLKWSFMNFKDWDKDDKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNA 163

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEFI+E   LQ A++E YA GL+G N+   GYD D+ +H GAGAY+CGEET+
Sbjct: 164 TAAYIYIRGEFIQEAAILQNAINEAYADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETS 223

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+  V PTI RRG +W++GFGRE N+
Sbjct: 224 LIESLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETAVVAPTICRRGGNWFAGFGRERNQ 283

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELI+KHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 284 GTKLFCISGHVNNPCTVEEEMSIPMRELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHI 343

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAA+IVMD+STD+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 344 CDTQLMDFDALKDSQSGLGTAALIVMDKSTDVVRAISRLSHFYRHESCGQCTPCREGSKW 403

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R  KG  ++REID+L E++K +EG TICALG+  AWPIQGLI++FRP +E RI 
Sbjct: 404 TEQIMKRFEKGQGREREIDMLQELTKQVEGHTICALGERFAWPIQGLIRHFRPELEARIR 463

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 464 KFAQEN 469


>gi|157864056|ref|XP_001687575.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania major
           strain Friedlin]
 gi|68223786|emb|CAJ02018.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           major strain Friedlin]
          Length = 481

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 267/424 (62%), Positives = 327/424 (77%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY   G  +  +  RG W     IL KG DW+INE+KASGLRGRGGAGF 
Sbjct: 20  LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79

Query: 62  TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK    DRP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A  
Sbjct: 80  SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  S++ A+ E Y  G LG N+   G+D D+  + GAGAYICGEETA++
Sbjct: 140 GYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETAMI 199

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG  W++ FGR+ N GT
Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MS+   EL+E+H GG+RGGWDNLL VIPGGSS P +P     
Sbjct: 260 KLFCISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE  +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ 
Sbjct: 320 DILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+K EI  L++VSK +EGR+ICALG AAAWP+QGLI++F+PL+EERI+++
Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFKPLMEERIERF 439

Query: 420 HRCN 423
              N
Sbjct: 440 WEAN 443


>gi|71896123|ref|NP_001026754.1| NADH dehydrogenase ubiquinone flavoprotein 1 precursor [Gallus
           gallus]
 gi|53136784|emb|CAG32721.1| hypothetical protein RCJMB04_33n14 [Gallus gallus]
          Length = 459

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 277/419 (66%), Positives = 330/419 (78%), Gaps = 1/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +IL KG DWI+ E+KASGLRGRGGAGF 
Sbjct: 31  LKDEDRIFTNLYGRHEWRLQGALRRGDWYKTKEILLKGVDWILGEIKASGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+GA  A
Sbjct: 91  TGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAMGARAA 150

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GLLG N+    Y  D+ V  GAGAYICGEETAL+E
Sbjct: 151 YIYIRGEFYNEASNLQVAIREAYEAGLLGKNACGSDYAFDVFVVRGAGAYICGEETALIE 210

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTK
Sbjct: 211 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGAWFAGFGRERNSGTK 270

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+RGGWDNLLAVIPGGSS P LP      
Sbjct: 271 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPKSVCET 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAAVIVMD+STDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 331 VLMDFDSLVQAQSGLGTAAVIVMDKSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           VM R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R+ ++
Sbjct: 391 VMARFVRGDAQAAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMRRF 449


>gi|146295664|ref|YP_001179435.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145409240|gb|ABP66244.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 584

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
           ML  Q RI   N   +  + + D +  G ++ + K+L     + +I E+K SGLRGRGGA
Sbjct: 98  MLKSQVRIALKNCGRINPEDIDDYIKNGGYEALKKVLTSMTPEEVIEEIKISGLRGRGGA 157

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW    K   D   Y+V NADE +PG   DR I+  +PH ++EG  IA++AIGA
Sbjct: 158 GFPTWFKWDAARKASGDI-KYVVCNADEGDPGAFMDRSILEGDPHAVLEGMTIAAYAIGA 216

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++     LLG+N     +  DI +  GAGA++CGEETA
Sbjct: 217 KEGYIYVRAEYPLAIKRLEIAIEQARNRNLLGNNILNTNFSFDIKLKKGAGAFVCGEETA 276

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PRLKPPFPA  GL+G PT +NNVE+ A VP I+  G   ++  G E ++
Sbjct: 277 LIASIEGERGMPRLKPPFPAQSGLWGRPTNINNVETYANVPWIITNGGKAFASLGTEKSK 336

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M ++  E+I    GGI+       AV  GG S  C+PA  
Sbjct: 337 GTKVFALAGKIKRGGLVEVPMGMSLREVIYNIGGGIKDD-KAFKAVQMGGPSGGCIPAD- 394

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ + + G+ +G+  +IVMD +T ++        F   ESCG+CT CR GT  
Sbjct: 395 LIDTPVDYESITKTGAIMGSGGMIVMDETTCMVDIARFFLEFTCKESCGKCTYCRVGTRR 454

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++R+  G  +  +++LL E++ +++  ++C LG  A  P+   ++ F+      I 
Sbjct: 455 MLEILDRICNGEGRDGDLELLEELAVSVKDGSLCGLGQTAPNPVLTTLRYFKDEYIAHIR 514

Query: 418 QYHRCN 423
              +C 
Sbjct: 515 D-KKCP 519


>gi|157779399|gb|ABV71243.1| NADPH-dependent sulfur oxidoreductase B subunit [Thermococcus
           litoralis DSM 5473]
          Length = 555

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 153/424 (36%), Positives = 242/424 (57%), Gaps = 5/424 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
               +  +  N   +  + + + ++ G ++ + K L+   + II+ +  SGLRGRGGAGF
Sbjct: 65  FAKQKKIVLENSGYINPEDIEEYIAAGGYEALKKALKMEPEEIIDIITKSGLRGRGGAGF 124

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  +   D   Y++ NADE +PG   DR+++  +PH +IEG +I ++AIGA  
Sbjct: 125 PTGLKWKFTRQAKGD-EKYVICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATK 183

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIYVR E+    + L+ A+ +    G LG N    G+  DI++  GAGA++CGEETAL+
Sbjct: 184 GFIYVRAEYPLAVKRLRIALQQARERGFLGENILGSGFSFDIVIKEGAGAFVCGEETALI 243

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK+G PR +PP+PA  GL+G PT +NNVE+ A VP I+R G   Y+  G E ++GT
Sbjct: 244 ASIEGKRGMPRPRPPYPAQKGLFGKPTNINNVETWANVPWIIRHGPEAYASLGTEKSKGT 303

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F++SG + +   VE  M IT  E++ +  GG + G   + AV  GG S  C+P   + 
Sbjct: 304 KVFALSGKIKHGGNVEVPMGITLREILYEIGGGTKTG-KKIKAVQLGGPSGGCIPEE-LF 361

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ +   G+ +G+  ++VMD  T ++        F   ESCG+CT CR GT  M 
Sbjct: 362 DTPVDYESVNATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRIGTKRMW 421

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            +++++ KG     +I  L E++  ++  ++C LG  A  P+   ++ FR      +   
Sbjct: 422 EILDKITKGQGTMEDIKELEELAPMVKAGSLCGLGQTAPNPVLTTLQYFRDEYIAHVKD- 480

Query: 420 HRCN 423
            RC 
Sbjct: 481 KRCP 484


>gi|209154510|gb|ACI33487.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo
           salar]
 gi|223647304|gb|ACN10410.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo
           salar]
 gi|223673187|gb|ACN12775.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor [Salmo
           salar]
          Length = 474

 Score =  525 bits (1353), Expect = e-147,   Method: Composition-based stats.
 Identities = 276/421 (65%), Positives = 333/421 (79%), Gaps = 1/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  + SRG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 48  LADQDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGVDWILNEIKVSGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW FM K    RP YLVVNADE EPGTCKDR+IMR++PH L+EGC++A  A+GA  A
Sbjct: 108 TGMKWGFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAA 167

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A++E YA+GL+G NS   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 168 YIYIRGEFYNESSNLQVAINEAYAAGLIGKNSCGSGYDFDVFVMRGAGAYICGEETALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W+ GFGRE N GTK
Sbjct: 228 SLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGTWFLGFGRERNSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG+RGGWDNLL VIPGGSS P +P      
Sbjct: 288 LFNISGHVNTPCTVEEEMSIPLKDLIERHAGGVRGGWDNLLCVIPGGSSTPLIPRSVCDT 347

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  +GLGTAA+IVMD+STD+I+AI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 348 VLMDFDGLVQAQTGLGTAALIVMDKSTDVIRAIARLIEFYKHESCGQCTPCREGVDWMNK 407

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R VKG A+  EID+++E+SK IEG TICALGD AAWP+QGLI++FRP++E RI ++ 
Sbjct: 408 MMWRFVKGDARAAEIDMIWEISKQIEGHTICALGDGAAWPVQGLIRHFRPIMETRIAEFQ 467

Query: 421 R 421
           +
Sbjct: 468 Q 468


>gi|115391293|ref|XP_001213151.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
 gi|114194075|gb|EAU35775.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
          Length = 496

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 272/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LQDKDRIFTNLYGHHGADLKSAMKYGDWYRTKDIVLKGHDWLISELKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N 
Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNS 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 287 GTKLFCISGHVNNPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  +GLGTAAV+VMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 347 CDDQLMDFDALKDSQTGLGTAAVVVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+RL  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP IE RI 
Sbjct: 407 TMQMMQRLETGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPEIEARIQ 466

Query: 418 QYHR 421
           +Y +
Sbjct: 467 EYSK 470


>gi|157825290|ref|YP_001493010.1| NADH dehydrogenase I subunit F [Rickettsia akari str. Hartford]
 gi|166918572|sp|A8GM77|NUOF_RICAH RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|157799248|gb|ABV74502.1| NADH dehydrogenase I chain F [Rickettsia akari str. Hartford]
          Length = 423

 Score =  525 bits (1352), Expect = e-147,   Method: Composition-based stats.
 Identities = 292/420 (69%), Positives = 337/420 (80%), Gaps = 3/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML ++D+IFTNL+G Q   L  S  RG WDN   +L+KGRD+II E+K SGLRGRGGAGF
Sbjct: 1   MLKEEDKIFTNLHGGQIHDLKSSKKRGDWDNTKALLDKGRDFIIEEIKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STGMKWSFMPK  S++P YLVVNADESEPGTCKDRDI+R EPH LIEGC++ASFAIGA+ 
Sbjct: 61  STGMKWSFMPKN-SEKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANN 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++Q A+DE Y   L+G N+   G+D +I +H GAGAYICGEETALL
Sbjct: 120 CYIYIRGEFYNEASNIQRALDEAYKDRLIGKNACGSGFDCNIYLHRGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PRLKPPFPA  GLYGCPTT+NNVESIAVVPTILRR ASW++  G+ NN GT
Sbjct: 180 ESLEGKKGMPRLKPPFPAGFGLYGCPTTINNVESIAVVPTILRRRASWFASIGKPNNTGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE+M I+  ELIEK+ GG+RGGWDNL A+IPGGSSVP LP   + 
Sbjct: 240 KIFCISGHVNKPCNVEEAMGISLKELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKS-LC 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +GSGLGT  +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 EVDMDFDSLRTVGSGLGTGGIIVMDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVM RLVKG A+K EID L  V+K IEG TICALGDAAAWPIQGLI++FR  IE+RI  Y
Sbjct: 359 RVMIRLVKGNAKKSEIDELLNVTKEIEGHTICALGDAAAWPIQGLIRHFRSEIEDRIKSY 418


>gi|146077013|ref|XP_001463061.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania infantum
           JPCM5]
 gi|134067143|emb|CAM65408.1| putative NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
           infantum JPCM5]
 gi|322496491|emb|CBZ31561.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 481

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 267/424 (62%), Positives = 327/424 (77%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY   G  +  +  RG W     IL KG DW+INE+KASGLRGRGGAGF 
Sbjct: 20  LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79

Query: 62  TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK    DRP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A  
Sbjct: 80  SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  S++ A+ E Y  G LG N+   G++ D+  + GAGAYICGEETA++
Sbjct: 140 GYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWNFDLYTYRGAGAYICGEETAMI 199

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG  W++ FGR+ N GT
Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MS+   ELIE+H GG+RGGWDNLL VIPGGSS P +P     
Sbjct: 260 KLFCISGHVNRPCTVEEEMSMPLRELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE  +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ 
Sbjct: 320 NILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+K EI  L++VSK +EGR+ICALG AAAWP+QGLI++F+PL+EERI+++
Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFKPLMEERIERF 439

Query: 420 HRCN 423
              N
Sbjct: 440 WEAN 443


>gi|145258049|ref|XP_001401928.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|134074533|emb|CAK38826.1| mitochondrial proton-pumping NADH:ubiquinone reductase
           nuo51-Aspergillus niger
          Length = 496

 Score =  524 bits (1351), Expect = e-147,   Method: Composition-based stats.
 Identities = 273/424 (64%), Positives = 335/424 (79%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 46  LKDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGHDWLISELKASGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF +E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 166 NAAYIYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 225

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N 
Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI+  ELI++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 286 GTKLFCISGHVNNPCTVEEEMSISLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKTI 345

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 346 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+R+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 406 TMQMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465

Query: 418 QYHR 421
           +Y +
Sbjct: 466 EYSK 469


>gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
 gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
          Length = 906

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + D ++ G +  + K L       +++EV  SGLRGRGGA
Sbjct: 414 FFHPQHRVALRNCGVINPEDIDDYLASGGYGGLAKALTAMTPAQVVDEVTKSGLRGRGGA 473

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW+F      D P Y+V NADE +PG   DR I+  +PH ++E   IA +AIGA
Sbjct: 474 GFLTGRKWAFTA-AAPDTPKYVVCNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGA 532

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +   +GLLG +    G+  DI +  GAGA++CGEETA
Sbjct: 533 RQGYIYVRAEYPVAVHRLEVAIAQARQAGLLGEDILGTGFSFDIDLRLGAGAFVCGEETA 592

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ GK+G+PR +PP+PA  GL+G PT +NNVE+ A +P I+  GA+WY+  G E ++
Sbjct: 593 LLHSVSGKRGEPRARPPYPALSGLWGKPTLLNNVETYANIPQIIVNGAAWYAAMGTERSK 652

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +N    +E  M  T   +I    GGI GG     AV  GG S  CLPA  
Sbjct: 653 GTKIFSLAGKINNTGLIEVPMGTTLRTIIYDIGGGIPGG-KAFKAVQTGGPSGGCLPAEY 711

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD S  ++        F + ESCG+CTPCR GT  
Sbjct: 712 L-DTPIDYDSLIAVGSMMGSGGLIVMDESDCMVDIARFYLEFTQDESCGKCTPCRIGTRR 770

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++  + +G  + ++++ L E+ ++I   ++C LG  A   +   ++ FR   E  I+
Sbjct: 771 LLEIITGITEGKGEPKDLERLEELGRDIREASLCGLGQTAPNLVLSTLRYFRHEYEAHIN 830

Query: 418 QYHRCN 423
            + RC 
Sbjct: 831 -HKRCP 835


>gi|310816709|ref|YP_003964673.1| NADH dehydrogenase I subunit F [Ketogulonicigenium vulgare Y25]
 gi|308755444|gb|ADO43373.1| NADH dehydrogenase I subunit F [Ketogulonicigenium vulgare Y25]
          Length = 437

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 317/432 (73%), Positives = 358/432 (82%), Gaps = 15/432 (3%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML+DQDRIFTN+YG   +SL+ +  RGH+D    I+ KGRDWI+NE+KASGLRGRGGAGF
Sbjct: 1   MLSDQDRIFTNIYGQHDRSLAGAQMRGHFDGTAGIIAKGRDWIVNEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK  SDRP YLVVNADESEPGTCKDR+I+RHEP  LIEGC++ASFAI AH 
Sbjct: 61  STGLKWSFMPKD-SDRPAYLVVNADESEPGTCKDREILRHEPFALIEGCLVASFAINAHA 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+IRERE+LQAA+D CY +GLLG+N+   G+D D+ +HHGAGAYICGEETALL
Sbjct: 120 CYIYIRGEYIREREALQAAIDACYDAGLLGANAAGSGWDFDLYLHHGAGAYICGEETALL 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKG PR+KPPFPA  GLYGCPTTVNNVESIAV PTILRRGASW+SGFGR NN GT
Sbjct: 180 ESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVAPTILRRGASWFSGFGRPNNAGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHC-------------GGIRGGWDNLLAVIPG 286
           KLF+ISGHVN PC VEE MSI F ELI++HC             GGIRGGWDNL  VIPG
Sbjct: 240 KLFAISGHVNRPCIVEEEMSIPFRELIDRHCGGIRGGGGTARHCGGIRGGWDNLKGVIPG 299

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           GSSVP LPA  M  AIMD+D L+   SGLGTAAVIVMD+S DI+KAIWRLS FYKHESCG
Sbjct: 300 GSSVPVLPASVMGEAIMDFDWLRAQQSGLGTAAVIVMDQSVDIVKAIWRLSKFYKHESCG 359

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           QCTPCREGTGWMMRVMERLV G A   EID+L EV+K +EG TICALGDAAAWPIQGL++
Sbjct: 360 QCTPCREGTGWMMRVMERLVAGTADPAEIDMLIEVTKQVEGHTICALGDAAAWPIQGLVR 419

Query: 407 NFRPLIEERIDQ 418
           +FRP IE R+ Q
Sbjct: 420 HFRPEIEARLHQ 431


>gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
 gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
          Length = 595

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  +++ + +    ++ +  +L     + +I  +  SGLRGRGGA
Sbjct: 109 FYKKQHRVALRNCGVINPENIEEYIGTRGYEALGTVLTSMKPEEVIQVILDSGLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F     +D   Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA
Sbjct: 169 GFPTGLKWKFAAANEAD-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L  A+++    GLLG N  + G+D DI +  GAGA++CGEETA
Sbjct: 228 SQGYIYVRAEYPIAVERLNIAIEQAREYGLLGKNIFETGFDFDIDIRLGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE++A +P I+  GA W+S  G E ++
Sbjct: 288 LMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETLANIPQIILNGAEWFSSMGTEKSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    VE  M  T  E++E+  GGI        A   GG S  C+PA  
Sbjct: 348 GTKVFALGGKVNNTGLVEIPMGTTLREIVEEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR GT  
Sbjct: 407 -FDVPIDYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRVGTRR 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G     ++D L E++ +++  ++CALG  A  P+   ++ FR      I 
Sbjct: 466 MLEILEKITNGQGTMEDLDKLEELAAHLKTNSLCALGQTAPNPVLSTMRYFRDEYVAHIV 525

Query: 418 QYHRCN 423
              +C 
Sbjct: 526 D-KKCP 530


>gi|54792418|emb|CAH65683.1| NADH-quinone oxidoreductase [Nilaparvata lugens]
          Length = 462

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 260/417 (62%), Positives = 315/417 (75%), Gaps = 1/417 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  ++ RG W    +I+ KG D+IINEVKASGLRGRGGAGF 
Sbjct: 43  LNDSDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADFIINEVKASGLRGRGGAGFP 102

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFM K    RP YL VNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 103 SGLKWSFMNKPSDGRPKYLCVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 162

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   G+D D+ +H GAGAYICGEETAL+E
Sbjct: 163 YIYIRGEFYNEASNMQVAISEAYQAGLIGKNACGTGFDFDVYMHRGAGAYICGEETALIE 222

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG +W++ FGR  N GTK
Sbjct: 223 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVAPTICRRGGAWFASFGRPRNTGTK 282

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MS+   ELIE+H GG+RGGWDNLLAVIPGGSS P +P      
Sbjct: 283 LFNISGHVNRPCTVEEEMSVPLRELIERHAGGVRGGWDNLLAVIPGGSSTPLIPKRVCDD 342

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L    +  GTAAVIVMD+STDIIKAI RL VFYKHESCGQCTPCREG  WM +
Sbjct: 343 VLMDFDALIAAETSFGTAAVIVMDKSTDIIKAIARLIVFYKHESCGQCTPCREGIAWMHK 402

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +M+R VKG A+  EID+L+E+SK +             WP+QGLI++FRP IE R+ 
Sbjct: 403 MMQRFVKGDARPAEIDMLWEISKRLRDTLFARWVTGLRWPVQGLIRHFRPEIENRMK 459


>gi|322488209|emb|CBZ23455.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 481

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 267/424 (62%), Positives = 328/424 (77%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY   G  +  +  RG W     IL KG DW+INE+KASGLRGRGGAGF 
Sbjct: 20  LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFP 79

Query: 62  TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK    DRP Y+VVN DESEPGTCKDR+IMRHEPH ++EG ++A FA+ A  
Sbjct: 80  SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARY 139

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  +++ A+ E YA G LG ++   G+D D+  + GAGAYICGEETA++
Sbjct: 140 GYIYIRGEFYNEWRAVEKAIHEAYAKGYLGKSACGSGWDFDLYTYRGAGAYICGEETAMI 199

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG  W++ FGR+ N GT
Sbjct: 200 ASLEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISGHVN PCTVEE MS+   ELIE+H GG+RGGWDNLL VIPGGSS P +P     
Sbjct: 260 KLYCISGHVNRPCTVEEEMSMPLRELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE  +GLGTAAVIVMD++TD+I AI RLS FY HESCGQCTPCREG+ W+ 
Sbjct: 320 DILMDYDALKEAQTGLGTAAVIVMDKTTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+K EI  L++VSK +EGR+ICALG AAAWP+QGLI++FRPL+EERI+++
Sbjct: 380 KMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFRPLMEERIERF 439

Query: 420 HRCN 423
              N
Sbjct: 440 WEAN 443


>gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 639

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 159/426 (37%), Positives = 242/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + + +  G ++ +  +L EK  + +I  +  SGLRGRGGA
Sbjct: 153 FYKKQHRVALRNCGVINPEKIDEYIGTGGYEALGIVLTEKKPEDVIQILLDSGLRGRGGA 212

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F     +D   Y+  NADE +PG   DR I+  +PH ++E   IA +AIGA
Sbjct: 213 GFPTGLKWKFAAGNDAD-QKYVCCNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGA 271

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 272 SQGYIYVRAEYPIAVQRLEIAIEQAREYGLLGKNIFDSGFDFDIELRLGAGAFVCGEETA 331

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+  G  W++  G E ++
Sbjct: 332 LMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETYANIPQIIVNGPEWFASMGTEKSK 391

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G ++    VE  M  T  E++E+  GG+        A   GG S  C+PA  
Sbjct: 392 GTKVFALGGKIHNTGLVEIPMGTTLREIVEEIGGGVP-NGKKFKAAQTGGPSGGCIPAEH 450

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD  T ++        F   ESCG+CTPCR GT  
Sbjct: 451 L-DIPIDYDNLLSIGSMMGSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCTPCRIGTRR 509

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++ KG A   ++D L E+  +++  ++CALG  A  P+   ++ FR      I 
Sbjct: 510 MLEILEKITKGQATMEDLDKLEELCYHLQSNSLCALGQTAPNPVLSTLRYFRDEYIAHIV 569

Query: 418 QYHRCN 423
              +C 
Sbjct: 570 D-KKCP 574


>gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 610

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 155/429 (36%), Positives = 245/429 (57%), Gaps = 10/429 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +I   N+  +   S+ + ++R  +  + K L     + +I E+K SGLRGRGGA
Sbjct: 114 FFARQVKIALRNVGVVDPMSIEEYIARDGYFALHKALTTMTPEDVIKEIKDSGLRGRGGA 173

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    +  SD   Y++ NADE +PG   DR ++  +PH+++E   IA +AIGA
Sbjct: 174 GFPTGLKWELARQQKSDI-KYMICNADEGDPGAFMDRSVLEGDPHSIVEAMTIAGYAIGA 232

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F+YVR E+    E L  A++  +  G LG N     +  DI +  GAGA++CGEETA
Sbjct: 233 QKGFVYVRAEYPLAIERLGRAIETAHEYGFLGENILGTNFSFDIEIRIGAGAFVCGEETA 292

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+GQPR+KPPFP   GL+G P+ +NNVE++++VP I+ +GASW+  +G E + 
Sbjct: 293 LMHSIEGKRGQPRVKPPFPVQKGLWGKPSVINNVETLSLVPPIILKGASWFRQYGTEKSP 352

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M IT  EL+ +  GG       + AV  GG S   +P+  
Sbjct: 353 GTKVFALAGKIKNTGLVEVPMGITLRELLYEIGGG-HPQGKQIKAVQTGGPSGGVIPSE- 410

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+ L ++G+ +G+  +IV+D    ++        F   ESCG+CTPCREGT  
Sbjct: 411 FFDTPVDYESLGKLGAIMGSGGMIVLDEDDCMVDVAKFFLEFTVDESCGKCTPCREGTKV 470

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  +++++ KG     +I+ L  +++ I+  ++C LG  A  P+   ++ +R   E  + 
Sbjct: 471 MYDLLDKITKGEGTMEDIEKLERLAQVIKDSSLCGLGQTAPNPVLSTLRYYRHEYEAHVK 530

Query: 418 QY----HRC 422
                  +C
Sbjct: 531 DNICPAKKC 539


>gi|225630643|ref|YP_002727434.1| NADH dehydrogenase I, F subunit [Wolbachia sp. wRi]
 gi|225592624|gb|ACN95643.1| NADH dehydrogenase I, F subunit [Wolbachia sp. wRi]
          Length = 417

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IFTNL G +   L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEQDKIFTNLNGKETPLLEGAKKRGGWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A  
Sbjct: 61  STGLKWSFMPKNLP--KAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLASRAISASV 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFTSLGKPNNTGT 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSAPLIPKSICD 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R+M+R+V G  +  EID L +++  IEG TICALGDAAAWPIQGLI++FR +I+ER
Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414


>gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5]
 gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5]
          Length = 597

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + + +  G ++ +  +L EK  + +I  +  SGLRGRGGA
Sbjct: 111 FYKKQKRVALRNCGVINPEDIEEYIGTGGYEALGTVLTEKKPEDVIQILLDSGLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F     +D   Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA
Sbjct: 171 GFPTGLKWKFAAANAAD-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    GLLG N  + G+D DI +  GAGA++CGEETA
Sbjct: 230 SQGYIYVRAEYPIAVKRLEIAIGQAREYGLLGKNIFESGFDFDIELRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+  G  W++  G E ++
Sbjct: 290 LMTSIEGNRGEPRPRPPFPALKGLFQRPTILNNVETYANIPQIIVNGPEWFASMGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E++E+  GG+        A   GG S  C+PA  
Sbjct: 350 GTKVFALGGKINNTGLVEIPMGTTLREIVEEIGGGVP-NGKKFKAAQTGGPSGGCIPAEH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR GT  
Sbjct: 409 -FDVPIDYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRVGTRR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++ KG A   ++D L E+  +++  ++CALG  A  P+   +  FR      I 
Sbjct: 468 MLEILEKITKGQATMADLDKLEELCYHLKSNSLCALGQTAPNPVLSTLHYFRDEYIAHIV 527

Query: 418 QYHRCN 423
              +C 
Sbjct: 528 D-KKCP 532


>gi|190571396|ref|YP_001975754.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018795|ref|ZP_03334603.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357668|emb|CAQ55112.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995746|gb|EEB56386.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 417

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 265/417 (63%), Positives = 319/417 (76%), Gaps = 3/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IF NL G +   L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEQDKIFINLNGKETPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A  AI A  
Sbjct: 61  STGLKWSFMPKNP--LKAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGRAISASV 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I+  ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P     
Sbjct: 239 KVFCISGHVNNPCNVEEELGISLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 TIEMDFDSLRAAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           R+M R+V G  +  E+D L +++  IEG TICALGDAAAWP+QGLI++FR +IEERI
Sbjct: 359 RIMRRMVAGNIKPGEVDKLLDLTTQIEGHTICALGDAAAWPVQGLIRHFRHIIEERI 415


>gi|57641548|ref|YP_184026.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
 gi|57159872|dbj|BAD85802.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
          Length = 600

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 154/424 (36%), Positives = 243/424 (57%), Gaps = 6/424 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
               +  +  N   +  +++ + +  G ++ + K L+   + II  +  SGLRGRGGAGF
Sbjct: 112 FAKQKKIVLENSGYIDPENIDEYIQAGGYEALKKALKMDPEEIIEIITKSGLRGRGGAGF 171

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  +   D   Y++ NADE +PG   DR+++  +PH +IEG +I ++AIGA  
Sbjct: 172 PTGLKWKFTRQAPGD-EKYVICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATK 230

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIYVR E+      L+ A+ +    G LG N    G+  DI++  GAGA++CGEETAL+
Sbjct: 231 GFIYVRAEYPLAIRRLKIALKQARERGFLGENILGSGFSFDIVIKEGAGAFVCGEETALI 290

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK+G PR +PP+PA  GL+G PT +NNVE+ A VP I+R G   Y+  G E ++GT
Sbjct: 291 ASIEGKRGMPRPRPPYPAQKGLWGKPTNINNVETWANVPWIIRHGWEAYASLGTEKSKGT 350

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F++SG + +   VE  M IT  E++ +  GG + G   + AV  GG S  C+P   + 
Sbjct: 351 KVFALSGKIKHGGNVEVPMGITLREILYEIGGGTKTG-KRIKAVQLGGPSGGCIPEE-LF 408

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ +   G+ +G+  ++VMD  T ++        F   ESCG+CT CR GT  M 
Sbjct: 409 DTPVDYESVNATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRIGTKRMW 468

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            +++R  +G A + +++ L  ++  ++  ++C LG  A  P+   ++ FR    E I+  
Sbjct: 469 EILDRFTRGEATEEDLEKLERLAYQVKAGSLCGLGQTAPNPVLTTLRYFREEYIEHIN-- 526

Query: 420 HRCN 423
            RC 
Sbjct: 527 GRCP 530


>gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
 gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
          Length = 595

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  +++ + +    ++ +  +L     + +I  +  SGLRGRGGA
Sbjct: 109 FYKKQHRVALRNCGVINPENIEEYIGTRGYEALGTVLTTMKPEEVIQVILDSGLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F     +D   Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA
Sbjct: 169 GFPTGLKWKFAAANEAD-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L+ A+ +    GLLG N  + G+D DI +  GAGA++CGEETA
Sbjct: 228 SQGYIYVRAEYPIAVERLKIAIGQAREYGLLGKNIFESGFDFDIDIRLGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE++A +P I+  G  W+S  G E ++
Sbjct: 288 LMTSIEGNRGEPRPRPPFPALKGLFQKPTILNNVETLANIPQIILNGPEWFSSMGTEKSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     VE  M  T  E++E+  GGI        A   GG S  C+PA  
Sbjct: 348 GTKVFALGGKVKNTGLVEIPMGTTLREIVEEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD L  +GS +G+  +IVMD  T ++        F   ESCG+C PCR GT  
Sbjct: 407 -FDVPIDYDNLIAIGSMMGSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCAPCRIGTRR 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G     ++D L +++ +++  ++CALG  A  P+   ++ F+      I 
Sbjct: 466 MLEILEKITNGQGTMEDLDKLEDLAAHLKSNSLCALGQTAPNPVLSTLRYFKDEYIAHIV 525

Query: 418 QYHRCN 423
              +C 
Sbjct: 526 D-KKCP 530


>gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 596

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 161/426 (37%), Positives = 246/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + ++++   +  + K+L E   + +I+E+K SGLRGRGG 
Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVISEIKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR ++  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + LQ A+D+    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ GK+G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W+S  G E ++
Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E+I +  GGI        A   GG S  C+PA  
Sbjct: 349 GTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD    ++        F   ESCG+C+PCR GT  
Sbjct: 408 L-DTPIDYDSLLSIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ ++  G  ++ +I+ L  ++ +I+  ++C LG  A  P+   ++ FR   E  I 
Sbjct: 467 MLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTLRYFRDEYEAHIK 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-KRCP 531


>gi|116202325|ref|XP_001226974.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Chaetomium globosum CBS 148.51]
 gi|88177565|gb|EAQ85033.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Chaetomium globosum CBS 148.51]
          Length = 495

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 264/421 (62%), Positives = 325/421 (77%), Gaps = 4/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +I+ KG DWII EVKASGLRGRGGAGF 
Sbjct: 52  LRDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEIILKGHDWIIGEVKASGLRGRGGAGFP 111

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KW +      ++P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A  A
Sbjct: 112 SGLKWDW---DKDNKPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNASAA 168

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEFI E   LQ A++E YA GL+G N+   GYD D+ VH G GAY+CGEET+L+E
Sbjct: 169 YIYIRGEFIEEAAVLQNAINEAYADGLIGKNACNSGYDFDVYVHRGGGAYVCGEETSLIE 228

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG SW++GFGRE N+GTK
Sbjct: 229 SLEGKPGKPRLKPPFPAAVGLFGCPSTVANVETVAVAPTICRRGGSWFAGFGRERNQGTK 288

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHVN P TVEE MSI   ELI+KHCGG+RGGWDNL AVIPGGSS P LP      
Sbjct: 289 LYCISGHVNNPATVEEEMSIPLRELIDKHCGGVRGGWDNLQAVIPGGSSTPILPKSVCDD 348

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK+  SGLGTAAVIVMD+S D+++AI RLS FY+HESCGQCTPCREG+ W  +
Sbjct: 349 QLMDFDALKDSQSGLGTAAVIVMDKSADVVRAISRLSHFYRHESCGQCTPCREGSKWTEQ 408

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M+R  KG+ ++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E R+ Q+ 
Sbjct: 409 IMQRFEKGLGREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARMQQFA 468

Query: 421 R 421
           +
Sbjct: 469 K 469


>gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
 gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
          Length = 595

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + +++ ++R  +  ++K+L E   D +I E+K SGLRGRGGA
Sbjct: 109 FYQKQFRVVLRNCGFINPEDINEYIARDGYAALEKVLLEMSPDEVIEELKRSGLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW F  +V SD   Y+V NADE +PG   DR ++  +PH+++E  +IA   +GA
Sbjct: 169 GFPTWRKWLFTKQVESDM-KYVVCNADEGDPGAYMDRSVLEGDPHSVLEAMIIAGKTVGA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IYVR E+      L  A+++    GLLG +    G+  DI +  GAGA++CGEETA
Sbjct: 228 HKGYIYVRAEYPLAIRRLNIAIEQARELGLLGEDILGSGFSFDIEIRLGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG +G PR +PPFPA  GL+G PT +NNVE++A +P I+ RG  W++  G E ++
Sbjct: 288 LLASIEGSRGTPRPRPPFPAVKGLWGKPTVINNVETLANIPVIILRGGDWFAKIGTETSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M  T  +++    GGI        AV  GG S   +P   
Sbjct: 348 GTKVFALTGKVNNSGLVEVPMGTTLRDIVFNIGGGIP-NGKKFKAVQTGGPSGGVIPEEY 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L+++GS +G+  +IVMD    ++        F   ESCG+C PCR G   
Sbjct: 407 L-DTPIDYENLQKLGSIMGSGGMIVMDEDDCMVNVAKFYLGFTVDESCGKCAPCRVGGRK 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++R+ KG     +ID + E+S  ++  ++C LG  A  P+   +  F       I 
Sbjct: 466 LYNILDRISKGKGTLEDIDKIKEISHAMKRASLCGLGQTAPNPVLSTLHYFEDEYRAHIV 525

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 526 E-KRCP 530


>gi|154332191|ref|XP_001561912.1| NADH-ubiquinone oxidoreductase, mitochondrial [Leishmania
           braziliensis MHOM/BR/75/M2904]
 gi|134059233|emb|CAM36932.1| putative NADH-ubiquinone oxidoreductase,mitochondrial [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 481

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 271/424 (63%), Positives = 327/424 (77%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLY   G  ++ +  RG W     IL KG DW++NE+KASGLRGRGGAGF 
Sbjct: 20  LRDQDRIFTNLYEDFGTGINAAERRGDWYRTKDILLKGHDWVVNEIKASGLRGRGGAGFP 79

Query: 62  TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK    DRP Y+VVN DESEPGTCKDR+IMRHEPH L+EG ++A FA+ A  
Sbjct: 80  SGLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKLVEGALVAGFAMRARY 139

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  S+  A+ E Y  G LG N+   G+D D+  + GAGAYICGEETA++
Sbjct: 140 GYIYIRGEFYNEWRSVDKAIHEAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETAMI 199

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG +G+PRLKPPFPANVGLYGCPTTV N E++AV PTI+RRG  W++ FGR+ N GT
Sbjct: 200 ASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELIE+H GG+RGGWDNLL VIPGGSS P +P     
Sbjct: 260 KLFCISGHVNRPCTVEEEMSIPLQELIERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICD 319

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE  +GLGTAAVIVMD+STD+I AI RLS FY HESCGQCTPCREG+ W+ 
Sbjct: 320 NILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLD 379

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+K EI  L++VSK +EGR+ICALG AAAWP+QGLI++FRPL+EERID++
Sbjct: 380 KMMKRFVHGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFRPLMEERIDRF 439

Query: 420 HRCN 423
              N
Sbjct: 440 WEAN 443


>gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum]
          Length = 596

 Score =  521 bits (1343), Expect = e-146,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + ++++   +  + K+L E   + +INE+K SGLRGRGG 
Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVINEIKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR ++  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGIKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + LQ A+D+    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ GK+G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W++  G E ++
Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E+I +  GGI        A   GG S  C+PA  
Sbjct: 349 GTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD    ++        F   ESCG+C+PCR GT  
Sbjct: 408 L-DTPIDYDSLLNIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ ++  G  ++ +I+ L  ++ +I+  ++C LG  A  P+   I+ FR   E  I 
Sbjct: 467 MLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTIRYFRDEYEAHIK 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-KRCP 531


>gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 596

 Score =  521 bits (1342), Expect = e-146,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + ++++   +  + K+L E   + +I E+K SGLRGRGG 
Sbjct: 110 FFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEQVIAEIKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR ++  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGIKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + LQ A+D+    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ GK+G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W++  G E ++
Sbjct: 289 LLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E+I +  GGI        A   GG S  C+PA  
Sbjct: 349 GTKVFALGGKINNTGLVEVPMGTTLREIIFEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD    ++        F   ESCG+C+PCR GT  
Sbjct: 408 L-DTPIDYDSLLNIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ ++  G  ++ +I+ L  ++ +I+   +C LG  A  P+   IK FR   E  I 
Sbjct: 467 MLELLNKITSGKGEEGDIEKLEALANSIKASALCGLGQTAPNPVLSTIKYFRDEYEAHIK 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-KRCP 531


>gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 616

 Score =  521 bits (1342), Expect = e-146,   Method: Composition-based stats.
 Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  +++ + ++   +  +  +L E     +I  VK SGLRGRGGA
Sbjct: 130 FFNKQMRVALRNCGLIDPENIDEYIAFDGYKALAAVLSEMSPSDVIQTVKTSGLRGRGGA 189

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG KW F  K  ++   Y+  NADE +PG   DR I+  +PH++IE   IA +AIG+
Sbjct: 190 GFSTGTKWEFASKNEAE-RKYVCCNADEGDPGAFMDRSILEGDPHSVIEAMAIAGYAIGS 248

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+      L+ A+ +    GLLG N    G+D D+ +  GAGA++CGEETA
Sbjct: 249 NQGYIYVRAEYPIAVHRLKIAISQARNYGLLGRNILDSGFDFDVDIRLGAGAFVCGEETA 308

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+PR++PPFPA  GL+  PT +NNVE++A V  IL  GA W++  G   ++
Sbjct: 309 LMASIEGKRGEPRVRPPFPAEKGLWQEPTILNNVETLANVAPILLNGAEWFADLGTLKSK 368

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+I G +     VE  M  T  E++ +  GGI GG     A   GG S  C+PA  
Sbjct: 369 GTKVFAIGGKIANTGLVEIPMGTTLREIVYEIGGGIPGG-KAFKAAQTGGPSGGCIPAKH 427

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A +DY+ L E+GS +G+  +IVMD  T ++        F   ESCG+CTPCR GT  
Sbjct: 428 I-DAPIDYESLIELGSMMGSGGLIVMDEDTCMVDIAKFFLEFTVDESCGKCTPCRVGTRM 486

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  +++++ +G   ++++D L   ++ I   ++CALG  A  P+   +K FR      I 
Sbjct: 487 MYDILDKITQGNGTEKDLDELERYARVITKTSLCALGQTAPNPVLSTLKYFREEYIAHIK 546

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 547 E-KRCP 551


>gi|50424275|ref|XP_460724.1| DEHA2F08360p [Debaryomyces hansenii CBS767]
 gi|49656393|emb|CAG89064.1| DEHA2F08360p [Debaryomyces hansenii]
          Length = 487

 Score =  521 bits (1342), Expect = e-146,   Method: Composition-based stats.
 Identities = 266/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+Y   G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 32  LKDQDRIFQNVYNKYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 91

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A  A+ A
Sbjct: 92  SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 151

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y  GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 152 TAAYIYIRGEFYNEAVILQQAINEAYKEGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 211

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTILRRG  W++ FGR+NN 
Sbjct: 212 LIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRKNNT 271

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   EL+EKHCGG++GGWDNLL VIPGG SVP +P   
Sbjct: 272 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGCSVPVMPKSV 331

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                MDYD L+++GSGLGTAAVIVM++ TD+I+AI R + FYKHESCGQCTPCREGT W
Sbjct: 332 CDDIAMDYDALRDVGSGLGTAAVIVMNKETDMIRAIQRFAAFYKHESCGQCTPCREGTTW 391

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + ++M+R VKG A ++EID+++E++K IEG TICALGDAAAWPIQGLIK+FRPL+ +RI 
Sbjct: 392 LQKMMDRFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPLMVDRIK 451

Query: 418 QYHR 421
           QY +
Sbjct: 452 QYEQ 455


>gi|50547327|ref|XP_501133.1| YALI0B20372p [Yarrowia lipolytica]
 gi|7684614|gb|AAF65194.2|AF197536_1 nucleotide-binding respiratory complex I subunit [Yarrowia
           lipolytica]
 gi|6689650|emb|CAB65520.1| NUBM protein [Yarrowia lipolytica]
 gi|49646999|emb|CAG83386.1| YALI0B20372p [Yarrowia lipolytica]
          Length = 488

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 262/423 (61%), Positives = 328/423 (77%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G  L+ +  +G W    +++ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 34  LKDQDRIFQNLYDNYGWDLASARKQGDWYKTKELILKGDTWIIDEIKKSGLRGRGGAGFP 93

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 94  SGLKWSFMNPPGWEKNEGPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLLAGRAMNA 153

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA+GL+G ++   GYD D+ +H G GAY+CGEET+
Sbjct: 154 TAAYIYIRGEFYNEAAVLQTAINEAYAAGLIGKDACGSGYDFDVYIHRGMGAYVCGEETS 213

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTILRRG  W++ FGRE N 
Sbjct: 214 LIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRERNS 273

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISG+VN PCTVEE MSI   EL+EKHCGGI+GGWDNLL VIPGG SVP LP   
Sbjct: 274 GTKLFCISGNVNEPCTVEEEMSIPLRELLEKHCGGIKGGWDNLLGVIPGGCSVPILPKNI 333

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK++ SGLGTAAVIV+++  D+I+AI R + FYKHESCGQCTPCREGT W
Sbjct: 334 CEDVLMDFDALKDVQSGLGTAAVIVINKQQDVIRAIQRFAAFYKHESCGQCTPCREGTTW 393

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +++ M+R   G A++REID+LYE++K+IEG TICALGDAAAWPIQGLI+NFRP +E R+ 
Sbjct: 394 LLKAMDRFRTGQAKEREIDMLYELTKDIEGHTICALGDAAAWPIQGLIRNFRPEMETRMK 453

Query: 418 QYH 420
           ++H
Sbjct: 454 KFH 456


>gi|255947866|ref|XP_002564700.1| Pc22g06720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211591717|emb|CAP97960.1| Pc22g06720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 495

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 275/424 (64%), Positives = 332/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  SM  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 46  LKDQDRIFTNLYGHHGADLKSSMKYGDWYRTKDIISKGDDWLISEIKASGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAYICGEET+
Sbjct: 166 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGSGYDFDVYIHRGMGAYICGEETS 225

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N 
Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN P TVEE MSI+  ELIEKHCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 286 GTKLFCISGHVNNPVTVEEEMSISLRELIEKHCGGVRGGWDNLLAVIPGGSSTPVIPKTV 345

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  +GLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 346 ADNQLMDFDALKDSQTGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M++M+RL  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 406 TMQMMQRLETGNAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465

Query: 418 QYHR 421
           QY +
Sbjct: 466 QYEK 469


>gi|42520789|ref|NP_966704.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410529|gb|AAS14638.1| NADH dehydrogenase I, F subunit, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 417

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IFTNL G     L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A  AI A  
Sbjct: 61  STGLKWSFMPKNLP--KAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P     
Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVM++STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMNKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R+M+R+V G  +  EID L +++  IEG TICALGDAAAWPIQGLI++FR +I+ER
Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414


>gi|301111442|ref|XP_002904800.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor
           [Phytophthora infestans T30-4]
 gi|262095130|gb|EEY53182.1| NADH dehydrogenase flavoprotein 1, mitochondrial precursor
           [Phytophthora infestans T30-4]
          Length = 498

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 265/419 (63%), Positives = 318/419 (75%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG     +  ++ RG W     +L  G DWI+ E+K SGLRGRGGAGF 
Sbjct: 40  LKDEDRIFTNVYGEDTWRVDGAVRRGDWHRTKDLLCMGPDWIVQEIKDSGLRGRGGAGFP 99

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP +LVVNADESEPGTCKDR+IMR +PH L+EGC+IA FA+ A  A
Sbjct: 100 SGLKWSFMPKQTDGRPSFLVVNADESEPGTCKDREIMRKDPHKLVEGCLIAGFAMRARAA 159

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++Y+RGEF  E   LQ A+ E Y  G LG N+   GYD D+ +H GAGAYICGEET LLE
Sbjct: 160 YVYIRGEFFNEALILQEAIHEAYQRGFLGRNACGSGYDFDVYLHRGAGAYICGEETGLLE 219

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG SW++  GR+NN GTK
Sbjct: 220 SLEGRQGKPRLKPPFPANTGLYGCPTTVTNVETVAVSPTILRRGGSWFASLGRKNNHGTK 279

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   +LIE+HCGG+RGGWDNL A IPGGSSVP L     + 
Sbjct: 280 LFCISGHVNNPCTVEEEMSIPLRDLIERHCGGVRGGWDNLQACIPGGSSVPVLDEELCQD 339

Query: 301 AIMDYDGLKEM-GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            +MDYD LK+  GSGLGTAAV + D+S D++ AI R S FY HESCGQCTPCREGTGWM 
Sbjct: 340 IMMDYDDLKQRGGSGLGTAAVTIFDKSVDMVGAIRRYSHFYTHESCGQCTPCREGTGWME 399

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +V+ R+  G A+  EI +L E+S+ IEG TICALGDAAAWP+QGLI+ F+  + ERI+ 
Sbjct: 400 KVLTRMETGDAELEEIPMLEEISRQIEGHTICALGDAAAWPVQGLIRKFKHKLVERIED 458


>gi|254569928|ref|XP_002492074.1| hypothetical protein [Pichia pastoris GS115]
 gi|238031871|emb|CAY69794.1| hypothetical protein PAS_chr2-2_0462 [Pichia pastoris GS115]
 gi|308152238|emb|CBI83538.1| NUBM (51 kDa) subunit of mitochondrial NADH:ubiquinone
           oxidoreductase (complex I) [Pichia pastoris]
 gi|328351436|emb|CCA37835.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Pichia pastoris CBS
           7435]
          Length = 473

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 271/420 (64%), Positives = 332/420 (79%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF N+Y   G+ L  S  RG W    +I+ KG +W+INE+KASGLRGRGGAGF 
Sbjct: 19  LKDSDRIFQNVYSKYGEDLKSSQQRGDWYKTKEIILKGHEWLINELKASGLRGRGGAGFP 78

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+K+SFMP   +  P YLVVNADE EPGTCKDR+I+R EPH L+EGC++A  A+ A  A
Sbjct: 79  SGLKYSFMPPNPNREPQYLVVNADEGEPGTCKDREIIRKEPHKLVEGCLLAGRAMNATAA 138

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A++E Y +GLLG N+   GYD D+ +H G GAYICGEETAL+E
Sbjct: 139 YIYIRGEFYNEAVALQTAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYICGEETALIE 198

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PRLKPPFPA VGL+G PTTV NVE++AV PTI RR  +W++ FGR+ N+GTK
Sbjct: 199 SIEGKAGKPRLKPPFPAGVGLFGRPTTVTNVETVAVTPTIFRRSGAWFASFGRDRNQGTK 258

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEESMSI   EL+EKHCGGI+GGWDNLL V+PGGSSVP +P      
Sbjct: 259 LFCISGHVNEPCTVEESMSIPLKELLEKHCGGIKGGWDNLLGVVPGGSSVPIMPKHVCED 318

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK++GSGLGTAAVIV+++ TDII+AI R S FYKHESCGQCTPCREGT ++ R
Sbjct: 319 VLMDFDALKDVGSGLGTAAVIVLNKQTDIIRAIQRFSAFYKHESCGQCTPCREGTTYLQR 378

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M+R V G A+++EIDL+YE+SK IEG TICALGDAAAWP+QGLIK+FRP + ERI QY 
Sbjct: 379 MMDRFVTGQAKEKEIDLIYELSKEIEGHTICALGDAAAWPVQGLIKSFRPEMVERIKQYE 438


>gi|2499312|sp|Q92406|NDUV1_ASPNG RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; Flags: Precursor
 gi|1556376|emb|CAA45744.1| 51kDa subunit of NADH:ubiquinone reductase (complex I) [Aspergillus
           niger]
          Length = 496

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 270/424 (63%), Positives = 334/424 (78%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 46  LKDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGHDWLISELKASGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 106 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 165

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A++Y+RGEF +E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 166 NAAYMYIRGEFYQEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 225

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N 
Sbjct: 226 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 285

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI+  ++I++HCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 286 GTKLFCISGHVNNPCTVEEEMSISLRDVIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKTI 345

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREG+ W
Sbjct: 346 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSTFYKHESCGQCTPCREGSKW 405

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            M +M+R+ KG A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI 
Sbjct: 406 TMHMMQRMEKGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIR 465

Query: 418 QYHR 421
           +Y +
Sbjct: 466 EYSK 469


>gi|39974413|ref|XP_368597.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Magnaporthe oryzae 70-15]
 gi|145018439|gb|EDK02718.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Magnaporthe oryzae 70-15]
          Length = 497

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 269/422 (63%), Positives = 322/422 (76%), Gaps = 4/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +   G W    +I+ KG DWII E+KASGLRGRGGAGF 
Sbjct: 48  LRDQDRIFQNLYGRYPPDLKHAKKMGDWHKTKEIILKGHDWIIGEIKASGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     D+   P YLVVNADE EPGTCKDR+IMR +PH LIEGC++A  A+ A
Sbjct: 108 SGLKWSFMNFKDWDKDTKPRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVAGRAMNA 167

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E YA GL+G N+   GYD D+ VH G GAY+CGEET+
Sbjct: 168 TAAYIYIRGEFYHEAAVLQGAINEAYADGLIGKNACGSGYDFDVFVHRGGGAYVCGEETS 227

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE+IAV PTI RRG SW++GFGRE N+
Sbjct: 228 LIESLEGKAGKPRLKPPFPAAVGLFGCPSTVANVETIAVAPTICRRGGSWFAGFGRERNQ 287

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISG VN PCTVEE MSI   ELIEKHCGG+RGGWDNLLAVIPGGSS P LP   
Sbjct: 288 GTKLFCISGQVNNPCTVEEEMSIPMRELIEKHCGGVRGGWDNLLAVIPGGSSTPILPKNI 347

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+S D+++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 348 CDDQLMDFDALKDSQSGLGTAAVIVMDKSADVVRAIARLSHFYRHESCGQCTPCREGSKW 407

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M R   G  + REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E+R+ 
Sbjct: 408 TEQIMHRFEHGQGRVREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEKRMA 467

Query: 418 QY 419
            +
Sbjct: 468 DF 469


>gi|190895700|gb|ACE96363.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895702|gb|ACE96364.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895708|gb|ACE96367.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895710|gb|ACE96368.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895714|gb|ACE96370.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895716|gb|ACE96371.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895720|gb|ACE96373.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895722|gb|ACE96374.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895724|gb|ACE96375.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895726|gb|ACE96376.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895728|gb|ACE96377.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895730|gb|ACE96378.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895732|gb|ACE96379.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895734|gb|ACE96380.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895736|gb|ACE96381.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895738|gb|ACE96382.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895740|gb|ACE96383.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895742|gb|ACE96384.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895744|gb|ACE96385.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895746|gb|ACE96386.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895752|gb|ACE96389.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895756|gb|ACE96391.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 408

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 279/405 (68%), Positives = 324/405 (80%), Gaps = 1/405 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 4   LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 64  SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408


>gi|99035131|ref|ZP_01314914.1| hypothetical protein Wendoof_01000244 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 417

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 266/416 (63%), Positives = 319/416 (76%), Gaps = 3/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IFTNL G     L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A  AI A  
Sbjct: 61  STGLKWSFMPKNLP--KAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFLHRGAGAYICGEETAQL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P     
Sbjct: 239 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVM++STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMNKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R+M+R+V G  +  EID L +++  IEG TICALGDAAAWPIQGLI++FR +I+ER
Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGLIRHFRHVIKER 414


>gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2]
 gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2]
          Length = 595

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 241/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q  R   N   +  + + + ++R  +  + K L E   D II E+ ASGLRGRGGA
Sbjct: 111 FFASQMFRAMRNKGLIDPEVIDEYIARDGYFALAKALNEMTPDNIIEEMMASGLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  GMKW F  +   D   +++ NADE +PG   DR ++  +PH ++EG  IA+ AI A
Sbjct: 171 GFPAGMKWKFAKQAEGD-KKFVLCNADEGDPGAFMDRSLLESDPHAILEGMTIAAKAINA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IY R E+    + L  A+ +    GLLG +    G++ DI V+ GAGA++CGEETA
Sbjct: 230 HKGYIYCRSEYPLAIKRLGIAIAQAKDYGLLGEDILGSGFNFDIEVYQGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PPFPA+ GL+  PT +NNVE++  VP I+ +G  WY+  G E ++
Sbjct: 290 LMRSIEGKRGMPRPRPPFPAHKGLWEKPTILNNVETLVNVPQIILKGGEWYASVGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++SG V     VE  M  T   L+    GG+        AV  GG S  C+P   
Sbjct: 350 GTKVFALSGDVANIGLVEIPMGTTLRTLVYDIGGGVPNKRK-FKAVQLGGPSGGCVPEEY 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ + ++G+ +G+   IVMD  T ++        F + ESCG+CTPCREGT  
Sbjct: 409 L-DTPIDYEEIVKVGAIMGSGGAIVMDNHTCMVDMARYFMDFIQDESCGKCTPCREGTKQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E + KG  Q  +I+ L  ++  I   ++C LG  A  P+   ++ FR   E  I+
Sbjct: 468 MLEILEAICKGKGQSGDIERLETLAHVIRRTSLCGLGQTAPNPVLSTLRYFRDEYEAHIE 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|262277296|ref|ZP_06055089.1| NADH oxidoreductase (quinone), f subunit [alpha proteobacterium
           HIMB114]
 gi|262224399|gb|EEY74858.1| NADH oxidoreductase (quinone), f subunit [alpha proteobacterium
           HIMB114]
          Length = 427

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 263/417 (63%), Positives = 328/417 (78%), Gaps = 2/417 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D DRIF NLYG +  +LS++++RG W +  +I+ KG++WII++VK S LRGRGGAGF
Sbjct: 1   MLKDTDRIFRNLYGDESFNLSNALNRGDWKDTKEIIAKGKEWIIDQVKKSELRGRGGAGF 60

Query: 61  STGMKWSFMPKVC-SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TGMKWSF PK   +DRPHYLV+NADESEPGTCKDRDI+R+EP  LIEG +IA++A+GA 
Sbjct: 61  PTGMKWSFAPKEPTADRPHYLVINADESEPGTCKDRDILRYEPQKLIEGSLIAAYAVGAK 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+RGE++ E + LQ A+DE Y   L+G N+   G+D D+ +H GAGAYICGEETAL
Sbjct: 121 TCYVYIRGEYVNEGKVLQQAIDEAYEKNLIGKNAAGSGWDFDMYIHFGAGAYICGEETAL 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG KGQPRLKPPFPA VGLYGCPT VNNVE+IAVVPTILRRG  W++ FGR  NRG
Sbjct: 181 LESLEGNKGQPRLKPPFPALVGLYGCPTIVNNVETIAVVPTILRRGPEWFASFGRPKNRG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISG+V  PC VEE MSI   ELIE H GG+ GGW NL AVIPGGSS+P LP    
Sbjct: 241 TKIFCISGNVVNPCNVEEEMSIPLKELIETHAGGVIGGWGNLQAVIPGGSSMPLLPKKVC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              +MD+D L E  SG+GTA ++V+D+S DI+  I R+S FYKHESCGQCTPCREG+GW+
Sbjct: 301 DNILMDFDALVEAKSGMGTAGIVVIDKSQDIVSCISRISRFYKHESCGQCTPCREGSGWL 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            R+MER+ +G A+  EID+L EV+K IEG TICA G+A+AWP+QGL+++FR  +EE+
Sbjct: 361 WRMMERINRGEAEIHEIDMLLEVTKQIEGHTICAFGEASAWPVQGLLRHFREQMEEK 417


>gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta thermophila DSM 6578]
          Length = 595

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + +++ ++R  +  ++K+L E   D +I E+K SGLRGRGGA
Sbjct: 109 FYQKQFRVVLRNCGFINPEDINEYIARDGYAALEKVLLEMSPDEVIEELKKSGLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW F  +   D   Y+V NADE +PG   DR ++  +PH+++E  +IA   + A
Sbjct: 169 GFPTWRKWLFTMQAKDD-VKYVVCNADEGDPGAYMDRSVLEGDPHSVLEAMIIAGKTVEA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IYVR E+      L  A+++    GLLG +    G+  DI +  GAGA++CGEETA
Sbjct: 228 HKGYIYVRAEYPLAIRRLNIAIEQARELGLLGEDILGSGFSFDIEIRLGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG +G PR +PPFPA  GL+G PT +NNVE++A +P I+ RG  W++  G E ++
Sbjct: 288 LLASIEGSRGTPRPRPPFPAVKGLWGKPTVINNVETLANIPVIILRGGDWFAKIGTETSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M  T  +++    GGI        AV  GG S   +P   
Sbjct: 348 GTKVFALTGKVNNSGLVEVPMGTTLRDIVFNIGGGIP-NGKKFKAVQTGGPSGGVIPEEY 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L+++GS +G+  +IVMD    ++        F   ESCG+C PCR G   
Sbjct: 407 L-DTPIDYENLQKLGSIMGSGGMIVMDEDDCMVNVAKFYLGFTVDESCGKCAPCRVGGRK 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++R+ KG     +ID + E+S  ++  ++C LG  A  P+   +  F       I 
Sbjct: 466 LYNILDRISKGKGTLEDIDKIKEISHAMKRASLCGLGQTAPNPVLSTLHYFEDEYRAHIV 525

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 526 E-KRCP 530


>gi|225631349|ref|ZP_03788019.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590954|gb|EEH12166.1| NADH dehydrogenase I, F subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 417

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 265/416 (63%), Positives = 317/416 (76%), Gaps = 3/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IFTNL G     L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 1   MLKEQDKIFTNLNGKGTPLLEGAKKRGSWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++A  AI A  
Sbjct: 61  STGLKWSFMPKNLP--KAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLAGKAISASV 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 119 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 179 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFASLGKPNNTGT 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP +P     
Sbjct: 239 KIFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSVPLIPKSICD 298

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 299 TIEMDFDSLRTAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 358

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R+M+R+V G  +  EID L +++  IEG TICALGDAAAWPIQG I++FR +I+ER
Sbjct: 359 RIMKRMVAGDIKPDEIDKLLDLTTQIEGHTICALGDAAAWPIQGFIRHFRHVIKER 414


>gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 600

 Score =  519 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 157/423 (37%), Positives = 241/423 (56%), Gaps = 5/423 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61
             Q  +      +  + + D +  G +  + K+L       +++EVK+SGLRGRGGAGF 
Sbjct: 116 RQQKIVLAKCGKINPERIEDYLVLGGYRAMKKVLTIMTPQAVVDEVKSSGLRGRGGAGFP 175

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG KW            Y++ NADE +PG   DR I+   PH ++EG +I  +A G+   
Sbjct: 176 TGTKWEGALHAKIKDKKYVICNADEGDPGAFMDRSILEGNPHEVLEGMIICGYATGSDEG 235

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+      L+ A+ +  A+G LG+N    G++  I +  GAGA++CGE TAL+ 
Sbjct: 236 YIYVRAEYPMAIRRLKIAISQAEAAGYLGNNILNSGFNFHIKIKAGAGAFVCGEGTALMA 295

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG +G PR K       GL+  PTT+NNVE+ A +PTI+ +GA WYS  G +N++GTK
Sbjct: 296 SIEGNRGMPRFKASRSTEKGLWDKPTTMNNVETFANIPTIIVKGALWYSSIGTDNSKGTK 355

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS++G V     VE  M  +  ++I    GGI        AV  GG S  C+PA  +  
Sbjct: 356 VFSLTGKVVNTGLVEVPMGTSLRQIIFDIGGGIPNNRK-FKAVQSGGPSGGCIPAKYL-D 413

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+ L ++G+ +G+  ++VMD +T ++        F K+ESCG+CTPCREGT  M+ 
Sbjct: 414 LPVDYNSLGKVGAMMGSGGLVVMDDTTCMVDVARFFLNFTKNESCGKCTPCREGTLRMLE 473

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ +G  + ++ID L  ++K I G ++C LG +A +P+   ++ FR   EE I    
Sbjct: 474 ILTRICEGKGEPKDIDDLERLAKVICGTSLCGLGQSAPFPVLSTLRYFRHEYEEHIYN-K 532

Query: 421 RCN 423
           RC 
Sbjct: 533 RCP 535


>gi|190895712|gb|ACE96369.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895718|gb|ACE96372.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895748|gb|ACE96387.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895754|gb|ACE96390.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895758|gb|ACE96392.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 408

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 279/405 (68%), Positives = 325/405 (80%), Gaps = 1/405 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 4   LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK+   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 64  SGLKWSFMPKISDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408


>gi|316978440|gb|EFV61427.1| putative NADH oxidoreductase, F subunit [Trichinella spiralis]
          Length = 709

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 263/427 (61%), Positives = 318/427 (74%), Gaps = 22/427 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+  SGLRGRGGAGF 
Sbjct: 281 LKDEDRIFTNLYGRHDWKLKGALSRGDWYKTKEILLKGEDWIVKEITKSGLRGRGGAGFP 340

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 341 AGLKWSFMNKPYDGRPRYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGRAMGARAA 400

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+R                   +GL+G N+   GYD D+ VH GAGAYICGEETALLE
Sbjct: 401 YIYIR-------------------AGLIGRNACGTGYDFDVFVHRGAGAYICGEETALLE 441

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VGL+GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK
Sbjct: 442 SIEGKQGKPRLKPPFPADVGLFGCPTTVTNVETVAVSPTICRRGGSWFASFGRERNHGTK 501

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV+ PCTVEE MSI   ELIE+H GG+ GGWDNLLAVIPGGSS P +P      
Sbjct: 502 LFCISGHVHTPCTVEEEMSIPLKELIERHGGGVIGGWDNLLAVIPGGSSTPVIPKQICND 561

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L E  +GLGTAAVIVM++ TDI+KAI RLS+FYKHESCGQCTPCREG  W+ +
Sbjct: 562 VLMDFDALIEAKTGLGTAAVIVMNKQTDIVKAIARLSLFYKHESCGQCTPCREGCSWLNK 621

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M R V G +   E+D+++E+SK +EG TICAL DAAAWP+QGL+++FRP +E R+ ++ 
Sbjct: 622 MMWRFVDGNSVPEELDMIWELSKQLEGHTICALADAAAWPVQGLVRHFRPELEARMKKFE 681

Query: 421 --RCNFQ 425
             R N Q
Sbjct: 682 TLRKNIQ 688


>gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
 gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
          Length = 596

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 172/426 (40%), Positives = 250/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  +S+ + ++ G +D + K L E   + ++ EVK SGLRGRGG 
Sbjct: 111 FYKKQMRLVLANCGHINPESIEEYIAVGGYDALAKALTEMTPEQVVAEVKKSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      D   Y+V NADE +PG   DR ++  +PH +IEG  I  +AIGA
Sbjct: 171 GFPTGLKWEFTRNAKGD-KKYVVCNADEGDPGAFMDRSVLEGDPHRVIEGMAICGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + L+ A+ +    GLLG N    G++  + +  GAGA++CGEETA
Sbjct: 230 DEGYVYVRAEYPLAIKRLKLAIKQAEDMGLLGDNILGTGFNFHLKIKEGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EGK+G PR +PPFPA  GL+G PT +NNVE+ A VP I+ RGA WY+  G E ++
Sbjct: 290 LLASIEGKRGMPRPRPPFPAISGLWGKPTNINNVETFANVPQIITRGADWYASIGTERSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N     E  M IT  E+I    GGI GG     AV  GG S  CLP   
Sbjct: 350 GTKVFALTGRINNTGLAEVPMGITMREIIYDIGGGIPGGRK-FKAVQIGGPSGGCLPEE- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD +T ++        F + ESCG+CTPCREGT  
Sbjct: 408 LLDLPIDYDSLTQAGAMMGSGGLVVMDETTCMVDVAKFFLNFTQSESCGKCTPCREGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+ +G  +  +I LL +++KNI+   +C LG  A  P+   ++ FR   E  I+
Sbjct: 468 MLEILTRITEGKGRPDDIALLEDLAKNIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIN 527

Query: 418 QYHRCN 423
              RC 
Sbjct: 528 D-KRCP 532


>gi|169771479|ref|XP_001820209.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|238485950|ref|XP_002374213.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           flavus NRRL3357]
 gi|83768068|dbj|BAE58207.1| unnamed protein product [Aspergillus oryzae]
 gi|220699092|gb|EED55431.1| NADH-ubiquinone oxidoreductase, subunit F, putative [Aspergillus
           flavus NRRL3357]
          Length = 496

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 265/424 (62%), Positives = 330/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG  G  L  +M  G W     I+ KG DW+I+E+KASGLRGRGGAGF 
Sbjct: 47  LQDQDRIFTNLYGHHGADLKSAMKYGDWHRTKDIVLKGDDWLISELKASGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+K+SFM     D   RP YLVVNADE EPGTCKDR+IMR +P  LIEGC++   A+ A
Sbjct: 107 SGLKYSFMNFKDWDKDPRPRYLVVNADEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNA 166

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           + A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEET+
Sbjct: 167 NAAYIYIRGEFYHEATVLQRAINEAYEAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETS 226

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI+RRGASW+S FGRE N 
Sbjct: 227 LIESIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVTPTIMRRGASWFSSFGRERNA 286

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN P TVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P +P   
Sbjct: 287 GTKLYCISGHVNNPVTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVIPKSV 346

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W
Sbjct: 347 CDDQLMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSSFYRHESCGQCTPCREGSKW 406

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++M+R+  G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E +I 
Sbjct: 407 TQQIMQRMETGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEAKIR 466

Query: 418 QYHR 421
           ++ +
Sbjct: 467 EHAQ 470


>gi|145498931|ref|XP_001435452.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402584|emb|CAK68055.1| unnamed protein product [Paramecium tetraurelia]
          Length = 462

 Score =  518 bits (1335), Expect = e-145,   Method: Composition-based stats.
 Identities = 266/407 (65%), Positives = 315/407 (77%), Gaps = 2/407 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN+Y      +  ++ RG W     IL  G+DWII+E+K SGLRGRGGAGF 
Sbjct: 23  LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+K+SFMPKV  D    YLV+NADESEPGTCKDR+I+RH+PH L+EG +   FA+ A  
Sbjct: 83  SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY RGEF  E  +LQ AVDE Y  G LG N+   GYD D+ VH GAGAYICGEET L+
Sbjct: 143 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT
Sbjct: 203 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNL  +IPGGSSVP LP     
Sbjct: 263 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKEVCE 322

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++
Sbjct: 323 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 382

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
            ++ER+  G A   EID L E++  IEG TICALGDAAAWP+QGLI+
Sbjct: 383 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIR 429


>gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
 gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
          Length = 594

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 164/426 (38%), Positives = 248/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +I   N   +   ++ D +S   +  ++K+L E   + +I E+K SGLRGRGG 
Sbjct: 108 FFKGQKKIALRNTGVIDPDNIEDYLSHDGYKALEKVLTEMSPEEVIEEIKESGLRGRGGG 167

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  +   +   Y+V NADE +PG   DR I+  +PH++IE   IA +A+GA
Sbjct: 168 GFPTGLKWQFTAQSEGE-QKYIVCNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAVGA 226

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++YVR E+    + ++ A+ +   +G +G+N     +  D+ +  GAGA++CGEETA
Sbjct: 227 NQGYVYVRAEYPLAVKRMEKAISDARENGFIGNNIFDTNFKFDLEIRVGAGAFVCGEETA 286

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+PR KPPFPA  GL+G PT +NNVE+ A +P I+ +GA W++  G E ++
Sbjct: 287 LMASIEGERGEPRPKPPFPAQSGLWGKPTLINNVETYANIPVIILKGAKWFNHIGTEKSK 346

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I   CGGI  G     A   GG S  C+P   
Sbjct: 347 GTKVFAVAGDINTTGLVEVPMGTTLREIIFDICGGIPEG-KKFKAAQTGGPSGGCIPREH 405

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MDYD L E+GS +G+  +IVMD +T ++        F + ESCG+C PCR GT  
Sbjct: 406 L-DISMDYDSLIEIGSMMGSGGLIVMDENTCMVDVARFFLDFTQDESCGKCVPCRIGTKR 464

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ KG  +  +I+ L ++ K I+   +C LG  A  P+   IK FR   E  I 
Sbjct: 465 MLEILERITKGQGEPGDIEKLEKLGKYIKENALCGLGQTAPNPVLSTIKYFRDEYEAHIK 524

Query: 418 QYHRCN 423
               C 
Sbjct: 525 D-KNCP 529


>gi|58584731|ref|YP_198304.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419047|gb|AAW71062.1| NADH:ubiquinone oxidoreductase, NADH-binding, chain F [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 424

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 263/416 (63%), Positives = 322/416 (77%), Gaps = 2/416 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + +QD+IFTNL G +   L  +  RG W    ++L+ G + II+EV+ SGLRGRGGAGFS
Sbjct: 1   MKEQDKIFTNLSGKETPLLKGAKKRGSWQKTKELLDLGSEKIIDEVRKSGLRGRGGAGFS 60

Query: 62  TGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG+KWSFMPK  S ++P YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A  
Sbjct: 61  TGLKWSFMPKNPSKEQPTYLVVNADESEPGTCKDRDILRYEPHKLLEGVLLASRAISASV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y  GL+G N+ K  YD+++ +H GAGAYICGEETA L
Sbjct: 121 AYIYIRGEFYNEYLVLKQALEEAYKEGLIGKNACKSSYDLNVFIHRGAGAYICGEETAQL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 181 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILYRGGEWFASLGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F +SGHVN PC VEE + I   ELIE++ GG+RGGWDNLLAVIPGGSSV  +P     
Sbjct: 241 KIFCVSGHVNNPCNVEEELGIPLRELIEEYAGGVRGGWDNLLAVIPGGSSVSLIPKSICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTAAVIVMD+STDII AI RLS FY HESCGQCTPCREGTGWM 
Sbjct: 301 IIKMDFDSLRAAQSGLGTAAVIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R+M+R+V G  +  EID L +++  IEG TICALGDAAAWPIQGLI++FR +IEER
Sbjct: 361 RIMKRMVTGNIKHGEIDKLLDLTTQIEGNTICALGDAAAWPIQGLIRHFRHVIEER 416


>gi|289522359|ref|ZP_06439213.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504195|gb|EFD25359.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 590

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 163/425 (38%), Positives = 252/425 (59%), Gaps = 7/425 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
           +  Q RI   N   +  + + +++SRG ++   K + E   D +I+EV  SGLRGRGGAG
Sbjct: 105 MAKQVRIVLRNCGIIDPEKIDEAISRGAYEAFSKAVKEMSPDEVIDEVYRSGLRGRGGAG 164

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F  +   + P Y++ NADE +PG   DR ++  +PHT+IEG  I ++A+GA 
Sbjct: 165 FPTGLKWKFTRQAKGE-PKYVICNADEGDPGAFMDRSVLEGDPHTVIEGMAICAYAVGAS 223

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+    + L  A+D+    G LG N    G++ DI +  GAGA++CGEETAL
Sbjct: 224 HGYIYCRAEYPLAIKRLNIALDQARERGFLGDNVFGSGFNFDIEIKEGAGAFVCGEETAL 283

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR +PPFPA  G++G PT +NNVE+ A VP I+R GAS +S FG E ++G
Sbjct: 284 IASIEGKRGMPRPRPPFPAESGVWGKPTNINNVETYANVPWIIRHGASEFSAFGTEKSKG 343

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G V     +E  M +   E+I    GGI  G + + AV  GG S  C+P   +
Sbjct: 344 TKVFALAGKVAKGGLIEIPMGMPIREVIYDIGGGIADGKE-IKAVQMGGPSGGCIP-SWL 401

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ +   G+ +G+  +IV+D ++ ++        F + ESCG+C  CR GT  M
Sbjct: 402 LDTPVDYESITATGAIMGSGGMIVLDETSCVVDVAKFFLNFTQRESCGKCPFCRIGTKRM 461

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ER+  G  +  ++DLLYE++  ++  ++C LG  A  P+   +K FR   E  +  
Sbjct: 462 LEILERISNGEGKMEDLDLLYELALQVKEGSLCGLGQTAPNPVLTTLKYFREEYETHVKD 521

Query: 419 YHRCN 423
             +C 
Sbjct: 522 -KKCP 525


>gi|190895704|gb|ACE96365.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895706|gb|ACE96366.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 408

 Score =  518 bits (1334), Expect = e-145,   Method: Composition-based stats.
 Identities = 278/405 (68%), Positives = 323/405 (79%), Gaps = 1/405 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 4   LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 64  SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLE K+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 184 SLEVKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           +MERL  G A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 408


>gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
 gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
          Length = 596

 Score =  518 bits (1333), Expect = e-145,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q RI   N+  +   ++ + ++R  +  + K+L E   + +I EVK SGLRGRGGA
Sbjct: 110 FFKNQVRIALRNVGFIDPLNIEEYIARDGYSALAKVLTEMTPEEVIEEVKKSGLRGRGGA 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K   +   Y+V NADE +PG   DR IM  +PH++IEG +I  +AIGA
Sbjct: 170 GFPTGLKWELGKKAKGE-EKYIVCNADEGDPGAFMDRSIMEGDPHSVIEGMLIGGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F+Y+R E+    + L AA+++    GLLG N     +  DI +  GAGA++CGEETA
Sbjct: 229 KKGFVYIRAEYPLAIKRLTAALEQAREYGLLGENILGTNFSFDIEIRIGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PPFP N GL+G PT +NNVE+ A +P I+  G+ W+S FG E ++
Sbjct: 289 LIASIEGKRGMPRPRPPFPVNSGLWGKPTVINNVETWANIPPIILNGSEWFSKFGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M IT  E++    G    G     AV  GG +  C+PA  
Sbjct: 349 GTKVFALAGKINMTGLIEVPMGITLREVVYDIGG-GIPGGKKFKAVQIGGPAGGCIPAEY 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ +  +G+ +G+  +IVMD    ++        F + ESCG+C PCR GT  
Sbjct: 408 L-DTPIDYESITALGAIMGSGGLIVMDEDNCMVDVAKFFLSFTQDESCGKCVPCRVGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++ KG   + ++  L +++  +   ++C LG  A  P+   +K FR      I 
Sbjct: 467 MLEILDKITKGEGTEEDLVELEQLAYTVRNTSLCGLGKGAPNPVLTTLKYFRDEYLAHIR 526

Query: 418 QYHRCN 423
              +C 
Sbjct: 527 D-KKCP 531


>gi|51947511|gb|AAU14240.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus
           ovalis]
          Length = 474

 Score =  518 bits (1333), Expect = e-145,   Method: Composition-based stats.
 Identities = 256/420 (60%), Positives = 327/420 (77%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           ++DQDRIF+NLY  Q   ++ ++ RG W     IL   +D++I+E+K SGLRGRGGAGF 
Sbjct: 34  ISDQDRIFSNLYKDQDPFINGALKRGDWYRTKDILSCPQDFVIDEIKKSGLRGRGGAGFP 93

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+K+SFMPK    RP YLVVNADESEP TCKDR+IMRH+PH L+EG +I  +A+ A  A
Sbjct: 94  SGLKYSFMPKKSDGRPSYLVVNADESEPATCKDREIMRHDPHKLVEGALIVGYAMRAKAA 153

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++Y+RGEF  E + L+ AV E Y  G +G N+   GYD DI VH GAGAY+CGEET++L 
Sbjct: 154 YVYIRGEFWHEAQQLERAVAEAYEKGFIGKNACGSGYDFDIYVHRGAGAYVCGEETSMLS 213

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG  G+PR+KPP+PA  GLYGCPTTV NVE+++ VPTI+RRG SW++ FGR+NN GTK
Sbjct: 214 SIEGVVGKPRMKPPYPAGTGLYGCPTTVTNVETVSTVPTIMRRGGSWFASFGRKNNHGTK 273

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGH+N PCTVE+ MSI+  ELIE+H GG+RGGWDNLL VIPGGSS P +       
Sbjct: 274 LYSLSGHINNPCTVEDEMSISVRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCET 333

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D L E GS  GTA VIV+D+STD+I AI RLS FY HESCGQCTPCREGTGW++ 
Sbjct: 334 ALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLHESCGQCTPCREGTGWLVD 393

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+  G A   EID LYE++K IEG TICALG+AAAWP+QGLIK++RP++E+R+D+YH
Sbjct: 394 MLERMKIGKADYGEIDQLYELTKQIEGHTICALGEAAAWPVQGLIKHYRPVMEDRMDKYH 453


>gi|149245198|ref|XP_001527133.1| NADH-quinone oxidoreductase chain F 1 [Lodderomyces elongisporus
           NRRL YB-4239]
 gi|146449527|gb|EDK43783.1| NADH-quinone oxidoreductase chain F 1 [Lodderomyces elongisporus
           NRRL YB-4239]
          Length = 491

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 265/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 35  LKDQDRIFQNVYGNYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A  A+ A
Sbjct: 95  SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 154

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAY+CGEETA
Sbjct: 155 TAAYIYIRGEFYNETVILQNAINEAYKAGLIGKNACGSGYDFDIYIHRGMGAYVCGEETA 214

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG  W+   GRE N 
Sbjct: 215 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGEWFDSLGRERNS 274

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   EL+EKHCGGI+GGWDNLL VIPGGSSVP +P   
Sbjct: 275 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIKGGWDNLLGVIPGGSSVPVMPKET 334

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD L+++GSGLGTAAVIVM++ TDII+AI R + FYKHESCGQCTPCREGT W
Sbjct: 335 CDTVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFAHFYKHESCGQCTPCREGTTW 394

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R+M+R   G A +REID+++E++K IEG TICALGDAAAWPIQGLIK+F+P++ +RI+
Sbjct: 395 LQRMMDRFQTGQATEREIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFKPVMIDRIN 454

Query: 418 QYHR 421
           +Y +
Sbjct: 455 EYQK 458


>gi|190895750|gb|ACE96388.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 408

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 278/405 (68%), Positives = 323/405 (79%), Gaps = 1/405 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF 
Sbjct: 4   LKDEDRIFTNVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFP 63

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPK    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 64  SGLKWSFMPKTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 123

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLE
Sbjct: 124 YIYIRGEYVNERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLE 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 184 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP      
Sbjct: 244 LFCVSGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 304 VLMDYDALKAVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWM 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           +MERL  G A+  EID+L EV+K IEG TICALGDAAA P+QGLI
Sbjct: 364 IMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAARPVQGLI 408


>gi|241951346|ref|XP_002418395.1| NADH dehydrogenase complex I subunit, putative [Candida
           dubliniensis CD36]
 gi|223641734|emb|CAX43695.1| NADH dehydrogenase complex I subunit, putative [Candida
           dubliniensis CD36]
          Length = 491

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 266/424 (62%), Positives = 327/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 35  LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A  A+ A
Sbjct: 95  SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 154

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAYICGEETA
Sbjct: 155 TAAYIYIRGEFYNETVVLQNAINEAYKAGLIGKNACGSGYDFDVYIHRGMGAYICGEETA 214

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG  W++ FGRE N 
Sbjct: 215 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNS 274

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   EL+EKHCGGI GGWDNLL VIPGGSSVP +P   
Sbjct: 275 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIVGGWDNLLGVIPGGSSVPIMPKET 334

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W
Sbjct: 335 CDNVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 394

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R+M+R   G A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI 
Sbjct: 395 LQRMMDRFYTGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 454

Query: 418 QYHR 421
           ++ +
Sbjct: 455 EFQQ 458


>gi|68171485|ref|ZP_00544869.1| NADH-quinone oxidoreductase, F subunit [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658598|ref|YP_507360.1| NADH dehydrogenase I subunit F [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999091|gb|EAM85758.1| NADH-quinone oxidoreductase, F subunit [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88600055|gb|ABD45524.1| NADH dehydrogenase I, F subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 427

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 268/422 (63%), Positives = 323/422 (76%), Gaps = 2/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D D++FTNL G     L  + SRG W N+ +IL  G + II E+K SGLRGRGGAGF
Sbjct: 1   MLKDSDKVFTNLSGQYSPFLRSAKSRGIWSNILEILNLGPEHIIQEIKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK     +P YL++NADESEPGTCKDRDI+R++PH LIEG +IA FA+   
Sbjct: 61  STGLKWSFMPKTRKEGQPAYLIINADESEPGTCKDRDILRYDPHRLIEGILIAGFAMNVT 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEF  E   L  A++E Y + L+G N+   GYD+DI +H GAGAYICGEETA 
Sbjct: 121 TAYIYIRGEFYNEYLVLSKALEEAYKAKLIGKNACNSGYDLDIFIHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA V  I+RRG+ W++  GRENN G
Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATVSEIMRRGSDWFASLGRENNTG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP    
Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMKELIEKYAGGVRGGWDNLLAVIPGGSSVPMLPKSIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L+ + SGLGTA +IVMD+STD+I AI RLS FY HESCGQCTPCREGTGWM
Sbjct: 301 DTVNMDFDSLRAVQSGLGTAGLIVMDKSTDLIAAIERLSHFYMHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R+M+++VKG A    IDLL  ++  +EG TICALGDAAAWPIQGLI++FR +IE+RI  
Sbjct: 361 WRIMKKMVKGDATSESIDLLLNITHQVEGHTICALGDAAAWPIQGLIRHFRNVIEDRIRD 420

Query: 419 YH 420
           Y+
Sbjct: 421 YN 422


>gi|145538866|ref|XP_001455133.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124422921|emb|CAK87736.1| unnamed protein product [Paramecium tetraurelia]
          Length = 463

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 266/407 (65%), Positives = 315/407 (77%), Gaps = 2/407 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN+Y      +  ++ RG W     IL  G+DWII+E+K SGLRGRGGAGF 
Sbjct: 24  LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 83

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+K+SFMPKV  D    YLV+NADESEPGTCKDR+I+RH+PH L+EG +   FA+ A  
Sbjct: 84  SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 143

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY RGEF  E  +LQ AVDE Y  G LG N+   GYD D+ VH GAGAYICGEET L+
Sbjct: 144 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 203

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT
Sbjct: 204 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 263

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNL  +IPGGSSVP LP     
Sbjct: 264 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKEVCE 323

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++
Sbjct: 324 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 383

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
            ++ER+  G A   EID L E++  IEG TICALGDAAAWP+QGLI+
Sbjct: 384 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIR 430


>gi|255724736|ref|XP_002547297.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|15425872|gb|AAK97627.1|AF399714_1 NADH dehydrogenase complex I 51 kDa subunit [Candida tropicalis]
 gi|240135188|gb|EER34742.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 489

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 267/424 (62%), Positives = 328/424 (77%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 33  LKDQDRIFQNVYGNYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 92

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A  A+ A
Sbjct: 93  SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 152

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD D+ +H G GAY+CGEETA
Sbjct: 153 TAAYIYIRGEFYNETVILQNAINEAYKAGLIGKNACGSGYDFDVYIHRGMGAYVCGEETA 212

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG  W++ FGRE N 
Sbjct: 213 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNS 272

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   EL+EKHCGGI+GGWDNLL VIPGGSSVP +P   
Sbjct: 273 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIKGGWDNLLGVIPGGSSVPIMPKET 332

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W
Sbjct: 333 CDHVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 392

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R+M+R  KG A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI 
Sbjct: 393 LQRMMDRFYKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 452

Query: 418 QYHR 421
           Q+  
Sbjct: 453 QFQE 456


>gi|307105658|gb|EFN53906.1| NADH:ubiquinone oxidoreductase 51 kD subunit [Chlorella variabilis]
          Length = 444

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 276/409 (67%), Positives = 330/409 (80%), Gaps = 1/409 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTN+YG     +  +  RG W     I+ KG DW+++++K SGLRGRGGAGF 
Sbjct: 8   LADKDRIFTNIYGRHDPFIKGAEKRGDWYRTKDIVSKGSDWVVDQMKKSGLRGRGGAGFP 67

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVN DESEPGTCKDR+IMRHEPH L+EGC+IA   + A   
Sbjct: 68  SGLKWSFMPKVSDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGCLIAGVGMRARAG 127

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF+ ER+++  A+DE YA G LG N+   GYD D+ VH GAGAYICGEETAL+E
Sbjct: 128 YIYIRGEFVEERKAVMRAIDEAYAKGYLGRNACGSGYDFDLNVHWGAGAYICGEETALIE 187

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPANVGLYGCPTTV NVE++AV PTILRRG  W++GFGR+NN GTK
Sbjct: 188 SLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFAGFGRKNNHGTK 247

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN P TVEE MSI+  ELIE+H GG+RGGWDNLLA+IPGGSSVP LP  Q   
Sbjct: 248 LFAISGHVNRPVTVEEEMSISLKELIERHAGGVRGGWDNLLAIIPGGSSVPMLPKAQCED 307

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LKE  SGLGTAAV+VMD+STD I+AI RLS FYKHESCGQCTPCREGTGW+  
Sbjct: 308 VLMDFDALKERQSGLGTAAVMVMDKSTDPIEAIARLSYFYKHESCGQCTPCREGTGWLYD 367

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           +M R+ KG A+  EID+L+E++K IEG TICALGDAAAWP+QGLI++FR
Sbjct: 368 IMTRMKKGDARVEEIDMLWELTKQIEGHTICALGDAAAWPVQGLIRHFR 416


>gi|313238308|emb|CBY13392.1| unnamed protein product [Oikopleura dioica]
 gi|313246735|emb|CBY35608.1| unnamed protein product [Oikopleura dioica]
          Length = 458

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 270/423 (63%), Positives = 320/423 (75%), Gaps = 3/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + DQDRIFTNLYG    S+  + +RG W    +IL KG DWI  E+K SGLRGRGGAGF 
Sbjct: 25  MKDQDRIFTNLYGFHDFSIKGAEARGDWYKTKEILLKGADWIQQEMKDSGLRGRGGAGFP 84

Query: 62  TGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG+KWSFM    +D RP YLVVNADE EPGTCKDRDIMRH+PH LIEGC++A +A+GA  
Sbjct: 85  TGLKWSFMNVPVTDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLIEGCLVAGYAMGATA 144

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IYVRGEF  E  +L  AV E YA+G LG N+   GYD D+ V  GAGAY+CGEETAL+
Sbjct: 145 AYIYVRGEFYNETSNLMYAVREAYAAGYLGQNACGTGYDFDVYVQRGAGAYVCGEETALI 204

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G+PRLKPPFPA +G +GCPTTVNNVE+IAV PTI RRGA W+S FGRE N GT
Sbjct: 205 ESLEGKQGKPRLKPPFPAAIGAFGCPTTVNNVETIAVAPTICRRGAEWFSSFGRERNTGT 264

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISG+VN PCTVEE+MSI   ELIEKH GG+RGGWDNLLAVIPGGSS P LP     
Sbjct: 265 KLFNISGNVNTPCTVEETMSIPMRELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPKHICD 324

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L    SGLGTAA+IVM++  D ++ IWRL  FYKHESCGQCTPCREG  WM 
Sbjct: 325 DIMMDFDALAAAPSGLGTAALIVMNKDDDPVECIWRLMEFYKHESCGQCTPCREGVSWMN 384

Query: 360 RVMERLVKGIAQ-KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +++R   G ++   EI+ L+E+SK +EG TICAL D AAWP QGLI+ F+P +EER  +
Sbjct: 385 DILKRWTFGQSRGPEEIEQLWEISKQVEGNTICALADGAAWPAQGLIRWFKPYLEERFAE 444

Query: 419 YHR 421
             R
Sbjct: 445 DVR 447


>gi|68486372|ref|XP_712921.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida
           albicans SC5314]
 gi|68486437|ref|XP_712889.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida
           albicans SC5314]
 gi|46434308|gb|EAK93721.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida
           albicans SC5314]
 gi|46434343|gb|EAK93755.1| potential mitochondrial Complex I, NUBM_51kd subunit [Candida
           albicans SC5314]
 gi|238882235|gb|EEQ45873.1| NADH-quinone oxidoreductase chain F [Candida albicans WO-1]
          Length = 490

 Score =  516 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 267/424 (62%), Positives = 326/424 (76%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 34  LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 93

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A  A+ A
Sbjct: 94  SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRAMNA 153

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GL+G N+   GYD DI +H G GAYICGEETA
Sbjct: 154 TAAYIYIRGEFYNETVVLQNAINEAYKAGLIGKNACGSGYDFDIYIHRGMGAYICGEETA 213

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVES++V PTILRRG  W++ FGRE N 
Sbjct: 214 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVESVSVAPTILRRGGDWFASFGRERNA 273

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF ISGHVN PCTVEE MSI   EL+EKHCGGI GGWDNLL VIPGGSSVP +P   
Sbjct: 274 GTKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGIVGGWDNLLGVIPGGSSVPIMPKET 333

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD L+++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W
Sbjct: 334 CDNVLMDYDALRDVGSGLGTAAVIVMNKQTDIIRAIQRFSHFYKHESCGQCTPCREGTTW 393

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R+M+R   G A ++EID ++E++K IEG TICALGDAAAWP+QGLIK+FRP++ +RI 
Sbjct: 394 LQRMMDRFYTGQATEKEIDQIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPVMVDRIK 453

Query: 418 QYHR 421
           ++ +
Sbjct: 454 EFQQ 457


>gi|254173091|ref|ZP_04879765.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
 gi|214033247|gb|EEB74075.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
          Length = 599

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 154/424 (36%), Positives = 243/424 (57%), Gaps = 7/424 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
              Q +I   N   +  +++ + ++ G ++ + K L    + II+ +  SGLRGRGGAGF
Sbjct: 112 FAKQVKIVLENSGYIDPENIDEYITVGGYEALKKALSMEPEEIIDIIMKSGLRGRGGAGF 171

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  +   D   Y++ NADE +PG   DR+++  +PH +IEG +I ++AIGA  
Sbjct: 172 PTGLKWKFTREAKGD-EKYIICNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATK 230

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIYVR E+      L+ A+ +    G LG N    G+  DI +  GAGA++CGEETAL+
Sbjct: 231 GFIYVRAEYPLAIRRLRIALKQAKERGFLGENILGSGFSFDIEIKEGAGAFVCGEETALI 290

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK+G PR +PP+PA  GL+G PT +NNVE+ A VP I+R G   ++  G E ++GT
Sbjct: 291 ASIEGKRGMPRPRPPYPAQKGLFGKPTNINNVETWANVPWIIRHGWKAFASLGTEKSKGT 350

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F++SG + +   VE  M  T  E++    GG + G   + AV  GG S  C+P   + 
Sbjct: 351 KVFALSGKIKHGGNVEVPMGTTLREILYDIGGGTKTG-KRIKAVQLGGPSGGCIP-EYLF 408

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ +   G+ +G+  ++VMD  T ++        F   ESCG+CT CR GT  M+
Sbjct: 409 DTPVDYESVNATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRVGTKRML 468

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ER  +G A K +++ L +++  ++  ++C LG  A  P+   ++ FR      I+  
Sbjct: 469 EILERFTEGKATKEDLERLEKLAHQVKAGSLCGLGQTAPNPVLTTLRYFRDEYLAHIE-- 526

Query: 420 HRCN 423
            +C 
Sbjct: 527 GKCP 530


>gi|51947517|gb|AAU14243.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus
           ovalis]
          Length = 475

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 255/420 (60%), Positives = 321/420 (76%), Gaps = 1/420 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           ++DQDRIF+NLY  Q   +  ++ RG W     IL    D++I+E+K SGLRGRGGAGF 
Sbjct: 35  ISDQDRIFSNLYKDQDPFIDGALKRGDWYRTKDILACPHDFVIDEIKKSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+K+SFMPK    RP +LVVNADESEP TCKDR+IMRH+PH L+EG +I  +A+ A  A
Sbjct: 95  SGLKYSFMPKKSDGRPSFLVVNADESEPATCKDREIMRHDPHKLVEGALIVGYAMRARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++Y+RGEF  E   L+ AV E Y  G +G N+   GYD DI VH GAGAYICGEET++L 
Sbjct: 155 YVYIRGEFWDEAMQLERAVAEAYEKGFIGKNACGSGYDFDIYVHRGAGAYICGEETSMLS 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG  G+PR+KPP+PA  GLYGCPTTV NVE+++ VPTI+RRG  W++ FGR+NN GTK
Sbjct: 215 SIEGVIGKPRMKPPYPAGTGLYGCPTTVTNVETVSTVPTIMRRGGGWFASFGRKNNHGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ +SGH+N PCTVE+ MSI+  ELIE+H GG+RGGWDNLL VIPGGSS P +       
Sbjct: 275 LYCLSGHINNPCTVEDEMSISLRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCET 334

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+MD+D L E GS  GTA VIV+D+STD+I AI RLS FY HESCGQCTPCREGTGW++ 
Sbjct: 335 ALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLHESCGQCTPCREGTGWLVD 394

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+  G A   EID LYE++K IEG TICALG+AAAWP+QGLIK++R +IE+RID+YH
Sbjct: 395 ILERMKIGKADYGEIDQLYELTKQIEGHTICALGEAAAWPVQGLIKHYRDVIEDRIDKYH 454


>gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
          Length = 643

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 159/426 (37%), Positives = 236/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + + +  G ++ + K+L     + +I  + ASGLRGRGGA
Sbjct: 157 FYKKQKRVALRNCGVINPEKIEEYIGTGGYEALGKVLTTMSPEDVIEVITASGLRGRGGA 216

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW F     +D   Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA
Sbjct: 217 GFPTGRKWQFAKDNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGA 275

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L  A+ +    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 276 TQGYIYVRAEYPIAVERLNIAIKQAREMGLLGKNLFNTGFDFDIELRLGAGAFVCGEETA 335

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A VP I+  GA W+S FG E ++
Sbjct: 336 LMTSIEGHRGEPRPRPPFPAVKGLFEKPTILNNVETWANVPQIIMNGAEWFSSFGTEKSK 395

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G ++    VE  M  T  E++E+  G    G     A   GG S  C+PA  
Sbjct: 396 GTKVFALGGKIHNTGLVEVPMGTTLREIVEEIGG-GIPGGKKFKAAQTGGPSGGCIPAEH 454

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD  T ++        F   ESCG+C+PCR GT  
Sbjct: 455 L-DVPIDYENLMAIGSMMGSGGLIVMDEETCMVDIAKFFLNFTVDESCGKCSPCRLGTKR 513

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ +++++  G A   ++D L E+   I+   +CALG  A  P+   +  FR      I 
Sbjct: 514 LLEMLDKITSGNATMEDLDKLEELCYYIKDNALCALGQTAPNPVLSTLHYFRDEYIAHIV 573

Query: 418 QYHRCN 423
              +C 
Sbjct: 574 D-KKCP 578


>gi|58579167|ref|YP_197379.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417793|emb|CAI26997.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 425

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 275/420 (65%), Positives = 323/420 (76%), Gaps = 2/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+D++FTNL G     L  + SRG W N+  IL  G + II EVK SGLRGRGGAGF
Sbjct: 1   MLEDKDKVFTNLSGQGSPFLKSAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK     +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+   
Sbjct: 61  STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEF  E   L  A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA 
Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA +  ILRRG++W++  G+ENN G
Sbjct: 181 LESLEGRKGNPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP    
Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM
Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++M +LVKG A   +IDLL  +S  IEG TICALGDAAAWP+QGLI++FR +IEERID 
Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420


>gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
          Length = 626

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 158/428 (36%), Positives = 237/428 (55%), Gaps = 7/428 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +I   N+  +Q +SL++ +    +  + K + +  +  II+E+K SGLRGRGGA
Sbjct: 141 FYDKQYKIALRNVEKIQLESLNEYIGADGYQALHKAIFDLDQKDIIDEMKKSGLRGRGGA 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    KV +    Y++ NADE +PG   DR I+  +PH+++EG  I   AIGA
Sbjct: 201 GFPTGRKWESAYKVEN-SQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  FIYVR E+    + L+ A+ +   + LLG N     +  DI +  G+GA++CGE TA
Sbjct: 260 NQGFIYVRAEYPIAVKRLRIAIQQAKETNLLGDNIFGSDFSFDIELRLGSGAFVCGEGTA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EG++G PR K    A  GL+  PT +NNVE+ A VP I+ RGA W++ FG E + 
Sbjct: 320 LMESIEGRRGMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYRGADWFTSFGTEGSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     VE  M  T  E+I    GGI+       AV  GG S  C+P   
Sbjct: 380 GTKVFALGGKVVNTGLVEVPMGSTLREIIFDIGGGIK-DGKKFKAVQTGGPSGGCIPEEF 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D++ L ++GS +G+  +IVMD    ++        F   ESCG+C PCREGT  
Sbjct: 439 L-DTPVDFESLAKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKR 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G  +  +I+ L ++   I   ++C LG  A  P+   +K FR   E  I 
Sbjct: 498 MLEILEKITSGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHIY 557

Query: 418 QYHRCNFQ 425
              +C   
Sbjct: 558 D-KKCPAH 564


>gi|145488753|ref|XP_001430380.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397477|emb|CAK62982.1| unnamed protein product [Paramecium tetraurelia]
          Length = 462

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 266/407 (65%), Positives = 315/407 (77%), Gaps = 2/407 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN+Y      +  ++ RG W     IL  G+DWII+E+K SGLRGRGGAGF 
Sbjct: 23  LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+K+SFMPKV  D    YLV+NADESEPGTCKDR+I+RH+PH L+EG +   FA+ A  
Sbjct: 83  SGLKYSFMPKVNPDGRPSYLVINADESEPGTCKDREILRHDPHKLVEGALCVGFAMRARA 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY RGEF  E  +LQ AVDE Y  G LG N+   GYD D+ VH GAGAYICGEET L+
Sbjct: 143 AYIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLI 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK G+PRLKPPFPAN GL+GCPTTV NVE+++V PTILRRGA+W++ FGR NNRGT
Sbjct: 203 ESLEGKPGKPRLKPPFPANAGLWGCPTTVTNVETVSVCPTILRRGANWFASFGRPNNRGT 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNL  +IPGGSSVP LP     
Sbjct: 263 KLFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKETCE 322

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++
Sbjct: 323 TVLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLV 382

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
            ++ER+  G A   EID L E++  IEG TICALGDAAAWP+QGLI+
Sbjct: 383 DLLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIR 429


>gi|197105262|ref|YP_002130639.1| NADH dehydrogenase I, F subunit [Phenylobacterium zucineum HLK1]
 gi|196478682|gb|ACG78210.1| NADH dehydrogenase I, F subunit [Phenylobacterium zucineum HLK1]
          Length = 437

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 261/420 (62%), Positives = 325/420 (77%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIF NLYGL    L  + +RG W+    I+ +  +WI +++KASGLRGRGGAGF
Sbjct: 4   ILADKDRIFLNLYGLHDWGLEGAKARGAWNGTKDIVAQSPEWICDQIKASGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+FMPK  S+RPHYLVVNADESEPG CKDR+I+R++PH LIEGC+IA  AI AH 
Sbjct: 64  PTGLKWTFMPKQESERPHYLVVNADESEPGACKDREILRNDPHLLIEGCLIACRAIRAHT 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IY+RGE++ ERE L AA+ + Y + L+G  +  G+D D+ + HG GAYICG+ETAL+E
Sbjct: 124 AYIYIRGEYVHERERLTAAIQQAYDAKLIGPGNIHGWDCDVRIQHGGGAYICGDETALME 183

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPA  G++G PTT+NNVESI+VV TILRRGA W++GFG E + GTK
Sbjct: 184 SLEGKKGQPRLKPPFPAGAGIWGAPTTINNVESISVVGTILRRGADWFAGFGTEKSTGTK 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ SGHVN PC VE+++ I   +LIE+H GG+RGGW NL AVIPGG SV  +PA +   
Sbjct: 244 LFAASGHVNKPCVVEDAVGIPVRQLIEEHFGGVRGGWGNLKAVIPGGISVRMIPAHEAEE 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+M Y+ L+  GSGLGT  +IV D+  D++KAI R S FYKHESCGQCTPCREGTGWM R
Sbjct: 304 AVMTYEDLQARGSGLGTGTMIVFDKDADLVKAIARASYFYKHESCGQCTPCREGTGWMWR 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VMER+V G A+  EIDLL +V+  +EG TIC LGDAAAWPIQGL ++FR  +EERI  Y 
Sbjct: 364 VMERMVTGEAEMSEIDLLLDVASQVEGHTICGLGDAAAWPIQGLFRHFRHEVEERITSYR 423


>gi|242399493|ref|YP_002994918.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
 gi|242265887|gb|ACS90569.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
          Length = 602

 Score =  515 bits (1326), Expect = e-144,   Method: Composition-based stats.
 Identities = 151/424 (35%), Positives = 244/424 (57%), Gaps = 6/424 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
            +  +  +  N   +  +++ + ++ G ++ + K  +   + II+ +  SGLRGRGGAGF
Sbjct: 112 FVKQKKIVLENSGYIDPENIEEYIAAGGYEALKKAFKMKPEEIIDFITKSGLRGRGGAGF 171

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F      D   Y+V NADE +PG   DR+++  +PH +IEG +I ++AIGA  
Sbjct: 172 PTGLKWKFTRDAPGD-EKYIVCNADEGDPGAFMDRNVLEGDPHRVIEGMIIGAYAIGATK 230

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIYVR E+    + L+ A+ +    G LG N    G+  +I++  GAGA++CGEETAL+
Sbjct: 231 GFIYVRAEYPLAIKRLRIALKQAREKGFLGENILGSGFSFEIVIKEGAGAFVCGEETALI 290

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK+G PR +PP+PA  GL+G PT +NNVE+ A VP I++ G   Y+  G E ++GT
Sbjct: 291 ASIEGKRGMPRPRPPYPAQKGLWGRPTNINNVETWANVPWIIKHGWEAYAALGTEKSKGT 350

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F++SG + +   VE  M IT  E++ +  GG + G   + AV  GG S  C+P   + 
Sbjct: 351 KVFALSGKIKHGGNVEVPMGITLREILYEIGGGTKTG-KKIKAVQLGGPSGGCIP-DYLF 408

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ +   G+ +G+  ++VMD  T ++        F   ESCG+CT CR GT  M 
Sbjct: 409 NTPVDYESVTATGAIMGSGGMVVMDEDTCMVDVAKFFLDFTVKESCGKCTFCRLGTKRMW 468

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            +++++ KG     +I+ L +++  ++  ++C LG  A  P+   +K F+      I+  
Sbjct: 469 ELLDKITKGEGALEDIEKLEKLAPLVKTGSLCGLGQTAPNPVLTTLKYFKDEYLAHIE-- 526

Query: 420 HRCN 423
            RC 
Sbjct: 527 GRCP 530


>gi|57239209|ref|YP_180345.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161288|emb|CAH58209.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 425

 Score =  514 bits (1325), Expect = e-144,   Method: Composition-based stats.
 Identities = 275/420 (65%), Positives = 323/420 (76%), Gaps = 2/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+D++FTNL G     L  + SRG W N+  IL  G + II EVK SGLRGRGGAGF
Sbjct: 1   MLEDKDKVFTNLSGQGSPFLKSAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK     +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+   
Sbjct: 61  STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEF  E   L  A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA 
Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA +  ILRRG++W++  G+ENN G
Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP    
Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM
Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++M +LVKG A   +IDLL  +S  IEG TICALGDAAAWP+QGLI++FR +IEERID 
Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420


>gi|144899470|emb|CAM76334.1| NADH-quinone oxidoreductase, F subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 425

 Score =  514 bits (1325), Expect = e-144,   Method: Composition-based stats.
 Identities = 300/418 (71%), Positives = 341/418 (81%), Gaps = 1/418 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTNLYG+    L  + SRG WDN   +L KGRD II EVK SGLRGRGGAGF
Sbjct: 1   MLRDQDRIFTNLYGIHDWRLKGAQSRGDWDNTKALLAKGRDAIIEEVKTSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSFMPK    RPHYLV+NADE EPGTCKDR+IMR +PH L+EG ++ASFAIGAH 
Sbjct: 61  GTGMKWSFMPKTEGARPHYLVINADEGEPGTCKDREIMRFDPHKLVEGALLASFAIGAHA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           ++IY+RGEF+RE E LQ A+DE YA+GL+G N+   G+D D+ VH GAGAYICGEE+AL+
Sbjct: 121 SYIYIRGEFVREAEHLQVAIDEAYAAGLIGKNACGSGWDFDLYVHRGAGAYICGEESALI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA VGLYGCPTTVNNVESIAVVP ILRR  +W++G GR  N GT
Sbjct: 181 ESLEGKKGQPRLKPPFPAGVGLYGCPTTVNNVESIAVVPAILRRSGAWFAGLGRAKNSGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISGHVN PC VEE M I+F ELI+KHCGGIRGGWDNL+ VIPGG S P L    + 
Sbjct: 241 KLFCISGHVNKPCNVEEEMGISFRELIDKHCGGIRGGWDNLMGVIPGGCSTPVLTREVIE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+DGL+E GSGLGTAAVIVMD+STDI++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 301 NCPMDFDGLREAGSGLGTAAVIVMDKSTDIVRAITRLSRFYKHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           R+MER+ KG A   EIDLL +V+K +EG TICALGDAAAWPIQGLI+NFRP IE++I 
Sbjct: 361 RMMERMDKGDATIEEIDLLQQVTKQVEGHTICALGDAAAWPIQGLIRNFRPEIEKKIR 418


>gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
 gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
          Length = 596

 Score =  514 bits (1325), Expect = e-144,   Method: Composition-based stats.
 Identities = 163/426 (38%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  +++ + ++ G ++ + K +       +++EVK SGLRGRGG 
Sbjct: 111 FYKKQHRLVLANCGAINPEAIEEYIAVGGYEALAKAVTQMTPQEVVDEVKKSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKW F     SD   Y++ NADE +PG   DR ++  +PH ++EG  I  +A+GA
Sbjct: 171 GFPTGMKWQFAKNSESD-KKYVICNADEGDPGAFMDRSVLEGDPHRVLEGMAICGYAMGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    GLLG +  +  +   I +  GAGA++CGEETA
Sbjct: 230 DEGYIYVRAEYPLAIKRLRTAIAQAEEMGLLGEHIFESDFSFTIHIKEGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PPFPA  GL+G PT +NNVE+ A V  I+  GA WY   G E ++
Sbjct: 290 LMASIEGKRGMPRPRPPFPAVSGLWGKPTNINNVETFANVAQIIVNGADWYCRLGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N     E  M I+  E+I    GGI        AV  GG S  CLP   
Sbjct: 350 GTKVFALTGKINNTGLAEVPMGISMREIIYDIGGGI-TNGKKFKAVQIGGPSGGCLPES- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +DYD L   G+ +G+  ++VMD  T ++        F + ESCG+CTPCREGT  
Sbjct: 408 MLDLPVDYDSLIAAGAMMGSGGLVVMDEDTCMVDVAKFFLNFTQSESCGKCTPCREGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+ +G  ++ +I+LL  ++KNI+   +C LG  A  P+   +K FR   E  I 
Sbjct: 468 MLEILTRITEGQGREGDIELLENLAKNIKETALCGLGQTAPNPVLSTLKYFRDEYEAHIK 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|330813987|ref|YP_004358226.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487082|gb|AEA81487.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 430

 Score =  514 bits (1324), Expect = e-144,   Method: Composition-based stats.
 Identities = 262/424 (61%), Positives = 329/424 (77%), Gaps = 4/424 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D++RIF NLYG +  SL  +  RG W +  +I+ KG+DWII EVK S LRGRGGAGF
Sbjct: 1   MLEDKNRIFKNLYGDESFSLPAAEVRGDWKDTKEIISKGKDWIIEEVKKSELRGRGGAGF 60

Query: 61  STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSF PK     RPHYLV+NADESEPGTCKDRDI+R+EPH LIEGC+IA++A+ A+
Sbjct: 61  PTGVKWSFAPKEVKEGRPHYLVINADESEPGTCKDRDILRYEPHKLIEGCLIAAYAVSAN 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+RGE++ E + LQ A++E Y  G LG N+   G+D+DI +H+GAGAYICGEETAL
Sbjct: 121 ICYVYIRGEYVNEGKVLQEAINEAYEKGYLGKNAAGTGWDLDIFIHYGAGAYICGEETAL 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG KGQPRLKPPFPA +GLYGCPT VNNVE++AVVPTIL+RG+ W++ FGR  NRG
Sbjct: 181 LESLEGNKGQPRLKPPFPALIGLYGCPTIVNNVETVAVVPTILKRGSEWFASFGRVKNRG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISG+VN PC VEE M I    LIEKH GG+ GGWDNL AVIPGGSS+P LP    
Sbjct: 241 TKIFCISGNVNNPCNVEEEMGIPLKVLIEKHAGGVIGGWDNLQAVIPGGSSMPLLPKNIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L E  SGLGTA ++V+D+S DI+K + R++ FYKHESCGQCTPCREGTGWM
Sbjct: 301 ETINMDFDALIEAKSGLGTAGIVVIDKSQDIVKCMTRIARFYKHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-- 416
            R++ER+ +G +   EID+L +V+K IEG TICA G+ ++WP+QGL+++FR  +E +   
Sbjct: 361 WRMLERIGRGESNISEIDMLMDVTKQIEGHTICAFGEGSSWPVQGLLRHFRKEMEAKCNS 420

Query: 417 DQYH 420
           DQYH
Sbjct: 421 DQYH 424


>gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4]
 gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4]
          Length = 626

 Score =  514 bits (1324), Expect = e-144,   Method: Composition-based stats.
 Identities = 158/428 (36%), Positives = 236/428 (55%), Gaps = 7/428 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +I   N+  +Q +SL++ +    +  + K + +  +  II+E+K SGLRGRGGA
Sbjct: 141 FYDKQYKIALRNVEKIQLESLNEYIGADGYQALHKAIFDLDQKDIIDEMKKSGLRGRGGA 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    KV +    Y++ NADE +PG   DR I+  +PH+++EG  I   AIGA
Sbjct: 201 GFPTGRKWESAYKVEN-SQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  FIYVR E+    + L+ A+ +     LLG N     +  DI +  G+GA++CGE TA
Sbjct: 260 NQGFIYVRAEYPIAVKRLRIAIQQAKEMNLLGDNIFGSDFSFDIELRLGSGAFVCGEGTA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EG++G PR K    A  GL+  PT +NNVE+ A VP I+ RGA W++ FG E + 
Sbjct: 320 LMESIEGRRGMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYRGADWFTSFGTEGSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     VE  M  T  E+I    GGI+       AV  GG S  C+P   
Sbjct: 380 GTKVFALGGKVVNTGLVEVPMGSTLREIIFDIGGGIK-DGKKFKAVQTGGPSGGCIPEEF 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D++ L ++GS +G+  +IVMD    ++        F   ESCG+C PCREGT  
Sbjct: 439 L-DTPVDFESLGKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKR 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G  +  +I+ L ++   I   ++C LG  A  P+   +K FR   E  I 
Sbjct: 498 MLEILEKITSGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHIY 557

Query: 418 QYHRCNFQ 425
              +C   
Sbjct: 558 D-KKCPAH 564


>gi|58617220|ref|YP_196419.1| NADH dehydrogenase I subunit F [Ehrlichia ruminantium str. Gardel]
 gi|58416832|emb|CAI27945.1| NADH-quinone oxidoreductase chain F [Ehrlichia ruminantium str.
           Gardel]
          Length = 425

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 275/420 (65%), Positives = 323/420 (76%), Gaps = 2/420 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+D++FTNL G     L  + SRG W N+  IL  G + II EVK SGLRGRGGAGF
Sbjct: 1   MLEDKDKVFTNLSGQGSPFLKAAKSRGIWSNILDILNLGSEHIIQEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           STG+KWSFMPK     +P YLVVNADESEPGTCKDRDI+R+EPH LIEG +IA FA+   
Sbjct: 61  STGLKWSFMPKTRKEGQPAYLVVNADESEPGTCKDRDILRYEPHRLIEGILIAGFAMRVT 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEF  E   L  A+ E Y + L+G N+ K GYD+DI +H GAGAYICGEETA 
Sbjct: 121 TAYIYIRGEFYNEYLILSEALKEAYKAKLIGKNACKSGYDIDIFIHRGAGAYICGEETAQ 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG+KG PRLKPPFPA +GLYGCPTT+NNVE+IA +  ILRRG++W++  G+ENN G
Sbjct: 181 LESLEGRKGMPRLKPPFPAAIGLYGCPTTINNVETIATIGEILRRGSNWFASLGKENNTG 240

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSSVP LP    
Sbjct: 241 TKIFCISGHVNNPCNVEEELGIPMRELIEKYAGGVRGGWDNLLAVIPGGSSVPVLPKSIC 300

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD+D L+ + SGLGTA +IVMD+STDII AI RLS FY HESCGQCTPCREGTGWM
Sbjct: 301 DTITMDFDSLRAVQSGLGTAGLIVMDKSTDIIAAIERLSHFYMHESCGQCTPCREGTGWM 360

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++M +LVKG A   +IDLL  +S  IEG TICALGDAAAWP+QGLI++FR +IEERID 
Sbjct: 361 WKIMRKLVKGTATYDDIDLLLSISYQIEGHTICALGDAAAWPVQGLIRHFRGVIEERIDN 420


>gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
 gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
          Length = 626

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 156/428 (36%), Positives = 236/428 (55%), Gaps = 7/428 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +I   N+  +Q +SL++ +    +  + K + +  +  II E+K SGLRGRGGA
Sbjct: 141 FYDKQFKIALRNVEKIQLESLNEYIGADGYQALHKAIFDLDQKEIIEEMKKSGLRGRGGA 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    KV +    Y++ NADE +PG   DR I+  +PH+++EG  I   AIGA
Sbjct: 201 GFPTGRKWESAYKVEN-NQKYVICNADEGDPGAFMDRAILEGDPHSVLEGMAICGRAIGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  FIYVR E+    + L+ A+ +     LLG+N     +  DI +  G+GA++CGE TA
Sbjct: 260 NQGFIYVRAEYPIAVKRLRIAIQQAKEMNLLGNNIFGSDFSFDIELRLGSGAFVCGEGTA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EG++G PR K    A  GL+  PT +NNVE+ A VP I+ +GA W++ +G E + 
Sbjct: 320 LMESIEGRRGMPRTKIFRTAERGLWDKPTIINNVETFANVPAIMYKGADWFTSYGTEGSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     VE  M  T  E+I    GGI+       AV  GG S  C+P   
Sbjct: 380 GTKVFALGGKVVNTGLVEVPMGSTLREIIFDIGGGIK-DGKKFKAVQTGGPSGGCIPEEF 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D++ L ++GS +G+  +IVMD    ++        F   ESCG+C PCREGT  
Sbjct: 439 L-DTPVDFESLAKIGSIMGSGGMIVMDEDDCMVDIARFFLEFTVDESCGKCVPCREGTKR 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G  +  +I+ L ++   I   ++C LG  A  P+   +K FR   E  I 
Sbjct: 498 MLEILEKITSGKGEDGDIEALEDLCDTITSASLCGLGQTAPNPVISTLKYFRNEYEAHIY 557

Query: 418 QYHRCNFQ 425
              +C   
Sbjct: 558 D-KKCPAH 564


>gi|126135420|ref|XP_001384234.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor (Complex I-51KD) (CI-51KD) [Scheffersomyces
           stipitis CBS 6054]
 gi|126091432|gb|ABN66205.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor (Complex I-51KD) (CI-51KD) [Scheffersomyces
           stipitis CBS 6054]
          Length = 484

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 263/426 (61%), Positives = 327/426 (76%), Gaps = 4/426 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF N+YG  G  L  SM  G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 31  LKDTDRIFQNIYGKYGHDLKSSMKMGDWHKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 90

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A   + A
Sbjct: 91  SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRGMNA 150

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +G LG N+   GYD DI +H G GAY+CGEETA
Sbjct: 151 TAAYIYIRGEFYNEAVILQNAINEAYKAGFLGKNACGSGYDFDIYIHRGMGAYVCGEETA 210

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG  W++ FGRE N+
Sbjct: 211 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGDWFASFGRERNQ 270

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G KLF ISGHVN PCTVEE MSI   EL+EKHCGG++GGWDNLL VIPGGSSVP +    
Sbjct: 271 GVKLFCISGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGSSVPIMTKET 330

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD L+++GSGLGTAAVIVM++ TDII+ I R S FYKHESCGQCTPCREGT W
Sbjct: 331 CDNILMDYDALRDVGSGLGTAAVIVMNKQTDIIRGIQRFSHFYKHESCGQCTPCREGTTW 390

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R+M+R  +G A ++EID+++E++K IEG TICALGDAAAWPIQGLIK+FRP++ +RI+
Sbjct: 391 LQRMMDRFQEGQATEKEIDMIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPVMVDRIN 450

Query: 418 QYHRCN 423
           ++ + N
Sbjct: 451 EFKKKN 456


>gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 625

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 153/422 (36%), Positives = 242/422 (57%), Gaps = 6/422 (1%)

Query: 4   DQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            Q RI     G +  +++ + ++ G +  + K L+   + I   +  + LRGRGGAGF  
Sbjct: 142 KQSRIVLEHCGKINPENIKEYIAAGGYQALAKALQMTPEEICQVMLKAKLRGRGGAGFPA 201

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW  + K  SD   Y++ N DE +PG   DR IM  +PH +IEG +IA +A GA   +
Sbjct: 202 GIKWDSVRKQKSD-VKYVICNGDEGDPGAFMDRSIMEGDPHRVIEGMIIAGYASGATQGY 260

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+      L+ A+++    GLLG N    G+D DI ++ GAGA++CGE +AL+ S
Sbjct: 261 IYVRAEYPLAVRRLKKAIEQAREFGLLGKNILGSGFDFDIKINMGAGAFVCGEGSALIAS 320

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++G P+ +PP     GL+G PT +NNVE+ A VP I+  GA WY   G E + GTK 
Sbjct: 321 IEGQRGMPKTRPPRTVEKGLFGKPTVLNNVETYANVPMIILNGADWYLSIGTETSPGTKA 380

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G++     +E  M  T  E+I +  GGI  G + L AV  GG S  CL    +   
Sbjct: 381 FALTGNIVNTGLIEVPMGTTLREVIYEIGGGIPNGKE-LKAVQIGGPSGGCLTKEHL-DL 438

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+D L  +G+ +G+  ++VMD  T +++       F + ESCG+C PCREGT  M+++
Sbjct: 439 PLDFDTLGTVGAMIGSGGMVVMDEDTCMVEVARFFMSFTQRESCGKCVPCREGTKRMLKL 498

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +E++  G   +++++LL E++  ++  ++C LG  A  P+   +K FR      + +  R
Sbjct: 499 LEKITSGKGTEKDLELLEELAVTVKDGSLCGLGQTAPNPVLTTLKYFRDEYLAHVRE-KR 557

Query: 422 CN 423
           C 
Sbjct: 558 CP 559


>gi|254456627|ref|ZP_05070056.1| NADH oxidoreductase (quinone), F subunit [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207083629|gb|EDZ61055.1| NADH oxidoreductase (quinone), F subunit [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 443

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 261/416 (62%), Positives = 323/416 (77%), Gaps = 1/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLY   G  L+ S  RG W N  ++ +KGRDWIINE+K+S LRGRGGAGF
Sbjct: 1   MLKDKDRIFQNLYNDLGSDLNSSQKRGDWVNTKELTDKGRDWIINEIKSSELRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSF PK    RPHYLV+N DESEPGTCKDRDI+R EPH LIEGC+IAS+A+ AH 
Sbjct: 61  PTGLKWSFAPKEVGSRPHYLVINGDESEPGTCKDRDILRFEPHKLIEGCLIASYAVQAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+  + + LQAA+DE Y   L+G N+   G+D+DI +H+GAGAYICGEETALL
Sbjct: 121 CYIYIRGEYFIDGQKLQAAIDEAYKKKLIGKNAAGTGWDLDIYIHYGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILRRG  W+S  GRE N GT
Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRRGGKWFSSLGRERNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISG+VN PC VEE M+I   ELIE H GG+ GGWDNL AVIPGGSS+P +P  +  
Sbjct: 241 KIFCISGNVNNPCNVEEEMNIPLKELIEVHAGGVIGGWDNLQAVIPGGSSMPLIPKKKCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L    SGLGTA ++V+++  DIIK + R++ FYKHESCGQCTPCREG+GWM 
Sbjct: 301 TLTMDFDSLMAEKSGLGTAGIVVINKDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R++ER+ KG A K EI++L +V+  I G TICA G+ ++WP+QGL+++F+  IEER
Sbjct: 361 RMLERMAKGEATKDEIEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFKKEIEER 416


>gi|332295878|ref|YP_004437801.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM
           14796]
 gi|332178981|gb|AEE14670.1| NADH dehydrogenase (quinone) [Thermodesulfobium narugense DSM
           14796]
          Length = 537

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
             + Q RI   N   +  + +++ +++G ++++ K L       +I  +K S LRGRGGA
Sbjct: 109 FFSKQTRIVLRNCGFINPEDITEYIAQGGYESLGKALTSMSSADVIKIIKDSLLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K  SD   Y++ NADE +PG   +R ++  +PH+++EG  IA +A+GA
Sbjct: 169 GFPTGLKWELAKKQTSDI-KYIICNADEGDPGAYMNRSVLEGDPHSVLEGMTIAGYAVGA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIY+R E+    + LQ A+ +    GLLG N     +  DI +  GAGA++CGEETA
Sbjct: 228 QKGFIYIRAEYPLAVKRLQIAIKQAKEIGLLGKNILGTNFSFDIELRIGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S EGK+G+PR KPP+P  +GL+G PT +NNVE++A VP I+ +GA+++   G E + 
Sbjct: 288 LINSTEGKRGEPRKKPPYPIEIGLFGRPTVINNVETLANVPIIIEKGANFFKQIGTEKSP 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FS+ G VN    +E  +  +   ++    GGI        A   GG S   +PA  
Sbjct: 348 GTKAFSLVGKVNIAGLIEVPLGTSLRTIVFDIGGGIP-EGHTFKAAQTGGPSGGVIPANY 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MDY+ L ++G+ +G+  +IVMD ++ ++        F   ESCG+C PCREGT  
Sbjct: 407 I-DIPMDYENLPQLGAIMGSGGLIVMDETSCMVDVAKFFLKFTVDESCGKCVPCREGTRQ 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++ +G    +++DLL ++   I+  ++C LG  A  P+   +++FR      + 
Sbjct: 466 MLNILEKITRGGGTMKDLDLLEKLGNVIKSTSLCGLGQTAPNPVLSTLRHFRDEYISHVK 525

Query: 418 QYHRCN 423
              +C 
Sbjct: 526 D-KKCP 530


>gi|260945745|ref|XP_002617170.1| hypothetical protein CLUG_02615 [Clavispora lusitaniae ATCC 42720]
 gi|238849024|gb|EEQ38488.1| hypothetical protein CLUG_02615 [Clavispora lusitaniae ATCC 42720]
          Length = 486

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 266/424 (62%), Positives = 325/424 (76%), Gaps = 4/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF N+YG  G  L  +   G W    +I+ KG  WII+E+K SGLRGRGGAGF 
Sbjct: 32  LKDSDRIFQNVYGTYGHDLKSAQKMGDWYKTKEIILKGDKWIIDEMKKSGLRGRGGAGFP 91

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++A   + A
Sbjct: 92  SGLKWSFMNPPGWEKNPGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLLAGRGMNA 151

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y SG LG N+   GYD D+ +H G GAYICGEETA
Sbjct: 152 TAAYIYIRGEFYNETTILQNAINEAYKSGFLGKNACGSGYDFDVYIHRGMGAYICGEETA 211

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK G+PRLKPPFPA VGL+G PTTV NVE+++V PTILRRG  W++ FGRE N 
Sbjct: 212 LIESIEGKAGKPRLKPPFPAGVGLFGRPTTVANVETVSVAPTILRRGGDWFASFGRERNA 271

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ISGHVN PCTVEE MSI   EL+EKHCGG+ GGWDNLL VIPGG SVP +P   
Sbjct: 272 GTKLYCISGHVNEPCTVEEEMSIPLKELLEKHCGGVIGGWDNLLGVIPGGCSVPVMPKDV 331

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MDYD LK++GSGLGTAAVIVM++ TDII+AI R S FYKHESCGQCTPCREGT W
Sbjct: 332 CDNVLMDYDALKDVGSGLGTAAVIVMNKQTDIIRAIQRFSAFYKHESCGQCTPCREGTTW 391

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + ++M+R VKG A ++EID ++E++K IEG TICALGDAAAWPIQGLIK+FRP++ +RI+
Sbjct: 392 LQKMMDRFVKGQATEKEIDQIFELTKEIEGHTICALGDAAAWPIQGLIKSFRPVMVDRIN 451

Query: 418 QYHR 421
           QY +
Sbjct: 452 QYQK 455


>gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 160/425 (37%), Positives = 241/425 (56%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q+R+   N   +  + + D      +  + K+    +  +I+ +K SGLRGRGGAG
Sbjct: 130 FYKKQERVALRNCGLVDPEDIDDYFLHDGYTALHKVTGMEQQAVIDIIKNSGLRGRGGAG 189

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           FSTGMKW F     +D   Y+V NADE +PG   DR I+  +PH++IE   I  +AIGA 
Sbjct: 190 FSTGMKWQFALNNKAD-QKYVVCNADEGDPGAFMDRSILEGDPHSIIEAMAICGYAIGAT 248

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
              +Y+R E+    + L+ A++E   SG+LG+N    G++ DI + +GAGA++CGEETAL
Sbjct: 249 KGLVYIRAEYPLAIKRLKIALEEAKESGVLGTNIFNSGFEFDIEIKYGAGAFVCGEETAL 308

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG +G+P  KPPFPA  G  G PT VNNVE++A +P I+ +GA W+  FG E + G
Sbjct: 309 IHSMEGHRGEPTTKPPFPAEHGYNGYPTNVNNVETLANIPVIINKGADWFKSFGTEKSSG 368

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +N    +E  M  T  E+I +  GGI+       +V  GG S  CL    +
Sbjct: 369 TKVFALAGKINNVGLIEVPMGTTLREVIYEIGGGIK-DGKKFKSVQTGGPSGGCLTEKHL 427

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D+D L E GS +G+  +IVMD    ++        F   ESCG+CTPCR G   +
Sbjct: 428 -DVAIDFDSLMEQGSMMGSGGMIVMDEDDCMVAVSKFYLEFTVEESCGKCTPCRIGNQRL 486

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++E++ KG   + ++  L E+S  I+  ++C LG  A  PI   + NF    E  +  
Sbjct: 487 LEILEKITKGNGTEDDLRKLKELSNVIKDTSLCGLGQTAPNPILSTLNNFWDEYEAHVKD 546

Query: 419 YHRCN 423
            H+C 
Sbjct: 547 -HKCP 550


>gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 604

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 159/425 (37%), Positives = 246/425 (57%), Gaps = 7/425 (1%)

Query: 2   LTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
           L  Q RI   N   +  +++   +  G +  +   L E     +I EV++SGLRGRGGAG
Sbjct: 101 LDSQKRILLKNSGKIDPENIESYLEEGGYQGLLNALKEMTPKDVIEEVQSSGLRGRGGAG 160

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW F  ++   +P Y++ NADE +PG   DR ++  +PH+L+EG  IA +AIGA+
Sbjct: 161 FPTFKKWEFT-RIEERQPKYVICNADEGDPGAFMDRSVLESDPHSLLEGMAIAGYAIGAN 219

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+R E+    + L+ A+++    G LG N    G+D DI +  GAGA++CGEETAL
Sbjct: 220 TGYIYIRAEYPLAVKRLEIAIEQAKEKGYLGKNIQDTGFDFDIYIREGAGAFVCGEETAL 279

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G P  KPPFPA  GL+  P+ +NNVE++A VP +  +GA  YS  G EN++G
Sbjct: 280 IASIEGKRGTPTFKPPFPAQKGLWTQPSCINNVETLANVPRVFLQGAEAYSELGTENSKG 339

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G V     +E  M I   +++ +  GGI        AV  GG S  C+PA   
Sbjct: 340 TKVFALAGDVKRGGLIEVPMGIKIKDIVYEVGGGIVED-KGFKAVQIGGPSGGCIPAKY- 397

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
           +   +DY+ L E+G+ +G+  ++VMD  T ++        F   ESCG+CT CR GT  M
Sbjct: 398 QDVSVDYESLNELGAIMGSGGLLVMDEDTCMVDVAKFFLDFTAEESCGKCTFCRIGTHQM 457

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +++++ +G  +  +ID L ++   I   ++C LG  A  P+   +K FR   E  + +
Sbjct: 458 LDILDKITEGRGEMEDIDRLEDLGSKIIKGSLCGLGQTAPNPVLTTLKYFRDEYEAHVKE 517

Query: 419 YHRCN 423
            +RC 
Sbjct: 518 -NRCP 521


>gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
          Length = 595

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 236/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +  G +  + K+L E   D +I  +  SGLRGRGGA
Sbjct: 109 FYKKQHRIALRNCGVINPEVIEEYIGTGGYQALGKVLTEMTPDEVIQTLLDSGLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW       +D   Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA
Sbjct: 169 GFPTGLKWKLAKGNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHAVLEAMAIAGYAIGA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+    + L+ A+++     LLG +    G+  DI +  GAGA++CGEETA
Sbjct: 228 SQGFIYVRAEYPIAVQRLKIAIEQAREMELLGKDIFGTGFSFDIDLRLGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+PR +PPFPA  GL+G P+ +NNVE++A +P I+  G  W++  G E ++
Sbjct: 288 LMTSIEGKRGEPRPRPPFPAQKGLFGKPSILNNVETLANIPQIILNGPEWFNAMGTEKSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G ++    VE  M  T  E++E+  G    G     A   GG S  C+PA  
Sbjct: 348 GTKVFALGGKIHNTGLVEVPMGTTLREIVEEIGG-GIPGGKKFKAAQTGGPSGGCIPAEH 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD L  +GS +G+  +IV+D    ++        F   ESCG+CTPCR GT  
Sbjct: 407 -FDIPIDYDNLISIGSMMGSGGLIVLDEDDCMVDIAKFFLEFTVEESCGKCTPCRIGTKR 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ ++ KG A   +ID L E+   ++  ++C LG  A  P+   +  FR   E  I 
Sbjct: 466 MLEILTKITKGQATMEDIDKLEELCYYVKTNSLCGLGQTAPNPVLSTLHFFRDEYEAHIK 525

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 526 E-KRCP 530


>gi|158319328|ref|YP_001511835.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158139527|gb|ABW17839.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 582

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 157/427 (36%), Positives = 249/427 (58%), Gaps = 8/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
           +L+ Q R+   N   +  +++ + ++ G ++ + K LE    + +I E+K SGL+GRGGA
Sbjct: 95  ILSKQKRVALKNCGIIDPENIDEYIATGGYEAMKKCLETMTPEDVIEEIKISGLKGRGGA 154

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW+   K       Y+V NADE +PG   DR ++  +PH LIEG +I  +AIGA
Sbjct: 155 GFPTWFKWN-AAKQSPGSVKYVVCNADEGDPGAFMDRSVLEGDPHNLIEGMIINGYAIGA 213

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK--LGYDVDIIVHHGAGAYICGEET 176
           +   IYVR E+      L  A++E  + G LG N      +D D+ +  GAGA++CGEET
Sbjct: 214 NEGIIYVRAEYPLAINRLNHAIEEARSRGYLGKNILGLDKFDFDLRIKAGAGAFVCGEET 273

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ESL+G++G PRLKPPFPA  G +  PT +NNVE+ A V  I+  G + +   G EN+
Sbjct: 274 ALIESLQGERGMPRLKPPFPAQRGYWDKPTNINNVETFANVAWIINNGGAAFGHMGTENS 333

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F+++G +     VE  M IT  +++    GGI+G  +   AV  GG S  C+PA 
Sbjct: 334 KGTKVFALTGKIKKGGLVEVPMGITLRDIVYDIGGGIKGDKE-FKAVQMGGPSGGCIPAE 392

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DY+ + ++G+ +G+  ++VMD +T ++        F + ESCG+C  CR GT 
Sbjct: 393 -LLDTSVDYESIAKIGAIMGSGGMVVMDETTCMVDMARFFLDFTRKESCGKCIHCRIGTK 451

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ R+ +G  ++ +I+LL ++ + I+  ++C LG  A  P+   I+ FR   E  I
Sbjct: 452 RMLEILTRICEGEGKEGDIELLEDLGEKIKEGSLCGLGQTAPNPVLSTIRYFREEYESHI 511

Query: 417 DQYHRCN 423
               +C 
Sbjct: 512 -HRKKCP 517


>gi|322825181|gb|EFZ30268.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 484

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 269/424 (63%), Positives = 323/424 (76%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G +++ +  RG W     IL KG DW+I E+KASGLRGRGGAGF 
Sbjct: 23  LKDQDRIFLNLYNDFGTNIASAERRGDWYRTKDILLKGHDWVIAEMKASGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPKV  D    YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 83  SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+RGEF  E  S++ A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG  G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG  W+S FGR+NN G 
Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPQWFSSFGRKNNAGV 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVE+ MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE+ +GLGTAAVIVMD+STD+I AI R+S FY +ESCGQCTPCREG+ W+ 
Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKSTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M R V G A+K EI  + +VSK +EGRTICAL  AAAWP+QGL ++F P++EERI++Y
Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442

Query: 420 HRCN 423
              N
Sbjct: 443 WEAN 446


>gi|71410619|ref|XP_807595.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
           strain CL Brener]
 gi|70871631|gb|EAN85744.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 484

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 268/424 (63%), Positives = 323/424 (76%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G +++ +  RG W     IL KG DW+I E+KASGLRGRGGAGF 
Sbjct: 23  LKDQDRIFLNLYNDFGTNIASAERRGDWYRTKDILLKGHDWVIAEMKASGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPKV  D    YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 83  SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+RGEF  E  S++ A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG  G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG  W+S FGR+NN G 
Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPQWFSSFGRKNNAGV 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVE+ MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE+ +GLGTAAVIVMD++TD+I AI R+S FY +ESCGQCTPCREG+ W+ 
Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKTTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M R V G A+K EI  + +VSK +EGRTICAL  AAAWP+QGL ++F P++EERI++Y
Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442

Query: 420 HRCN 423
              N
Sbjct: 443 WEAN 446


>gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 597

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 159/426 (37%), Positives = 247/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
               Q+RI  +N   +  +S+ + ++RG +  + + + +     +  EV  + LRGRGGA
Sbjct: 111 FYKQQERIVLSNCGYINPESIDEYIARGGYQGLARAVTEFDPQGVTEEVINANLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW F  +   +   Y+V NADE +PG   DR I+  +PH++IEG  IAS+AIGA
Sbjct: 171 GFPAGKKWKFASQEP-EPTKYMVCNADEGDPGAFMDRSILEGDPHSVIEGMAIASYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++Y+R E+      L+ A+ +    GLLG N    G++  + V  GAGA++CGE TA
Sbjct: 230 EVGYVYIRAEYPLAVRRLKEAIQQAEELGLLGENILGSGFNFKLKVKEGAGAFVCGESTA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG++G PR  PP     GL+G PT +NNVE++A V  IL +GA  ++ FG E + 
Sbjct: 290 LTRSIEGRRGMPRPTPPRSTEKGLWGKPTVLNNVETLACVSFILSKGAEEFTKFGTEQSP 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M I+  +++    GGI+ G   + AV  GG S  CLP  +
Sbjct: 350 GTKVFALTGKVNNTGLVEVPMGISIRDIVFDIGGGIQHGNK-IKAVQIGGPSGGCLPEDK 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L + G+ +G+  ++VMD  T ++        F + ESCG+CTPCREGT  
Sbjct: 409 L-DLSVDFDTLDDAGAMMGSGGLVVMDEETCVVDVSKFFLKFTQAESCGKCTPCREGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ KG  + ++IDLL E+ + I   ++C LG +A  P+   ++ F     E I+
Sbjct: 468 MLEILERITKGQGEPKDIDLLKELGEMIINTSLCGLGKSAPNPVLSTLRYFEDEYREHIE 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 K-GRCP 532


>gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis]
          Length = 846

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  +++++ ++ G +  + K L       +I  +  SGLRGRGGA
Sbjct: 353 FFHPQIRVALRNCGIIDPENINEYIASGGYFGLAKALTAMKPTEVIETITCSGLRGRGGA 412

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW++      +   Y+V NADE +PG   DR I+  +PH ++E   IA +AIGA
Sbjct: 413 GFLTGRKWAYTA-AVKETVKYVVCNADEGDPGAFMDRSILEGDPHAVLEAMTIAGYAIGA 471

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F+YVR E+      L+ A+D+ + +GLLG N    G+  DI +  GAGA++CGEETA
Sbjct: 472 QQGFVYVRAEYPIAVHRLEVAIDQAHQAGLLGQNILGTGFSFDIEIRLGAGAFVCGEETA 531

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ GK+G+PR +PP+PA  GL+G PT +NNVE+ A +P I+ +GA WY+  G   ++
Sbjct: 532 LLNSVSGKRGEPRTRPPYPAVSGLWGKPTLLNNVETYANIPQIICKGADWYAAMGTSGSK 591

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +N    +E  M  +   +     GG         AV  GG S  CLPA  
Sbjct: 592 GTKIFSLAGKINNTGLIEVPMGTSLRTI-IYGIGGGIPKGKAFKAVQTGGPSGGCLPAEY 650

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L ++GS +G+  +IVMD +  ++        F + ESCG+CTPCR GT  
Sbjct: 651 L-DIPIDYDSLMKIGSMMGSGGLIVMDETDCMVDIARFYLEFTQDESCGKCTPCRIGTRR 709

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ R+ +G    ++++LL E+  +I+  ++C LG  A  P+   +++FR   E  I 
Sbjct: 710 LLEIITRITEGKGTMKDLELLEELGHDIKEASLCGLGQTAPNPVLSTLRHFRHEYEAHIK 769

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 770 E-KRCP 774


>gi|320160662|ref|YP_004173886.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1]
 gi|319994515|dbj|BAJ63286.1| bidirectional hydrogenase F subunit [Anaerolinea thermophila UNI-1]
          Length = 538

 Score =  512 bits (1318), Expect = e-143,   Method: Composition-based stats.
 Identities = 155/421 (36%), Positives = 241/421 (57%), Gaps = 6/421 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
             T Q +    N   +  + + D ++ G +  + K+L +     +I EV+ SGLRGRGGA
Sbjct: 114 FFTRQKKNALENAGVVDPERIEDYIATGGYAALIKVLTEFSPSEVIQEVQKSGLRGRGGA 173

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KWS + K   +   ++V NADE +PG   DR I+  +PH ++EG +IA++A+GA
Sbjct: 174 GYPTGLKWSTVAKAEGE-QKFVVCNADEGDPGAFMDRSILESDPHRVLEGMIIAAYAVGA 232

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++YVR E+    +  + A+ +    G LG N     +   + V  GAGA++CGEETA
Sbjct: 233 NQGYVYVRAEYPLAVKRFRTAIRQAEKMGFLGQNICGTPFSFKVDVRLGAGAFVCGEETA 292

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+S+EG +G PRL+PP+PA  GL+G PT VNNVE+ A +P ILR G  W++  G E ++
Sbjct: 293 LLQSVEGNRGMPRLRPPYPAQSGLFGKPTLVNNVETYANIPAILRNGGEWFAQTGTEKSK 352

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     +E  M IT  E++    GG+  G     AV  GG S  C+P   
Sbjct: 353 GTKVFALTGKVKNTGLIEVPMGITLREIVYDIGGGVPDGRK-FKAVQTGGPSGGCIPEE- 410

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ LK +GS +G+  +IV+D  +D+I        F   ESCG+C PCR GT  
Sbjct: 411 LLDTPVDYESLKALGSMMGSGGMIVIDDRSDMIDVARYFMEFSMEESCGKCVPCRVGTVQ 470

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ +  +  A + ++  L E+   +   ++C LG AA  PI   +K FR     +I 
Sbjct: 471 LYNLLGKFQRREATEEDLKTLEELCDLVRSASLCGLGQAAPNPILSTLKYFREEYLAKIR 530

Query: 418 Q 418
           +
Sbjct: 531 K 531


>gi|301062485|ref|ZP_07203131.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300443415|gb|EFK07534.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 540

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q R I  N   +  + + + ++ G +  + K+L    R+ +I+E+K SGLRG GGA
Sbjct: 110 FYSKQQRTILRNCGHIDPEEIEEYLAAGGYQTIKKVLLGMSREEVIDEIKRSGLRGLGGA 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    K       Y++ N DE +PG  +DR +M   PH+++EG +IA++AIGA
Sbjct: 170 GFPTGRKWEVCYKAQGP-KKYVICNGDEGDPGAFQDRSVMEGTPHSVLEGMMIAAYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    G LG +    G+D  I +  GAGA++CGEETA
Sbjct: 229 QQGYIYVRAEYPLAVKRLRIAISQAKQKGFLGKDILGSGFDFKIALFQGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G PRL+PPFPA  G+ G PT ++NV+++A +P I+ +GA  ++  G E ++
Sbjct: 289 LIASVEGFRGMPRLRPPFPAESGMEGKPTIIDNVKTLASIPVIIDQGAESFARVGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT +F+++G V     +E  M +T  E+I    GGI        AV  GG S  CLP   
Sbjct: 349 GTVVFALTGKVENNGLIEVPMGMTLREIIFDIGGGIP-DGKTFKAVQTGGPSGGCLPESA 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK  GS +G+  ++VMD  T ++        F + ESCGQCTPCR GT  
Sbjct: 408 L-DMPVDFDSLKAAGSMMGSGGLVVMDEDTCMVDLARYFLDFTQRESCGQCTPCRLGTKQ 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++  + KG  +  +IDLL E+S+ +   ++CALG  A  P+   I+ FR   E  I+
Sbjct: 467 LFDILNDITKGQGRPEDIDLLLEISEAVSTHSLCALGKTAPNPVITTIRYFRDEYEAHIN 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-KRCP 531


>gi|301060418|ref|ZP_07201277.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
 gi|300445472|gb|EFK09378.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [delta
           proteobacterium NaphS2]
          Length = 540

 Score =  511 bits (1317), Expect = e-143,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q R +  N   +  + + + ++ G +  + K+L    R+ +I+E+K SGLRG GGA
Sbjct: 110 FYSKQQRTLLRNCGHIDPEEIEEYLAAGGYQTIKKVLLGMSREEVIDEIKRSGLRGLGGA 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    K   D   Y++ N DE +PG  +DR +M   PH+++EG +IA++AIGA
Sbjct: 170 GFPTGRKWEVCYKAQ-DTKKYVICNGDEGDPGAFQDRSVMEGTPHSVLEGMMIAAYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    G LG +    G+D  I +  GAGA++CGEETA
Sbjct: 229 QQGYIYVRAEYPLAVKRLRIAISQAKKKGFLGKDILGSGFDFKIALFQGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G PRL+PPFPA  G+ G PT ++NV+++A +P I+  GA  +   G E ++
Sbjct: 289 LIASVEGFRGMPRLRPPFPAESGMEGKPTIIDNVKTLASIPIIIDEGAESFVRIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT +F+++G V     +E  M +T  E+I    GGI        AV  GG S  CLPA  
Sbjct: 349 GTVVFALTGKVENNGLIEVPMGMTLREIIFDIGGGIP-DGKAFKAVQTGGPSGGCLPASF 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK  GS +G+  ++VMD  T ++        F + ESCGQC PCR GT  
Sbjct: 408 L-DMPVDFDSLKAAGSMMGSGGLVVMDEETCMVDLARYFLDFTQRESCGQCIPCRLGTKQ 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++  + KG  +  +IDLL E+S+ +   ++CALG  A  P+   I+ FR   E  I+
Sbjct: 467 LFDILNDITKGQGRPEDIDLLLEISEAVSTHSLCALGKTAPNPVITTIRYFRDEYEAHIN 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-KRCP 531


>gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
 gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 596

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + ++++   +  + K+L E   + +I EVK SGLRGRGG 
Sbjct: 110 FFRKQRRIALRNCGVINPEDIREAIAFDGYKALAKVLTEMTPEQVIEEVKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   + P Y+V NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGVKWEFAYKQK-ETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + L+ A+ +    GLLG +    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLKIAIQQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ GK+G+PR +PPFPA  G++G PT +NNVE+ A +P I+  G  W++  G E ++
Sbjct: 289 LLNSIMGKRGEPRPRPPFPAVKGVWGKPTIINNVETFANIPPIILNGGEWFASIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E+     GG   G     AV  GG S  C+PA  
Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREI-IYEIGGGIPGGKKFKAVQIGGPSGGCIPAE- 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   G+ +G+  ++VMD  T ++        F   ESCG+C PCR GT  
Sbjct: 407 LLDTPIDYDSLTSAGAMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G  ++ +I+ L E++K I+   +C LG  A  P+   ++ FR   E  I 
Sbjct: 467 MLELLDKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIK 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-KRCP 531


>gi|71083587|ref|YP_266306.1| NADH dehydrogenase I subunit F [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062700|gb|AAZ21703.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 443

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 255/416 (61%), Positives = 321/416 (77%), Gaps = 1/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLY  +G  +  S +RG W +  +I++KGR+WII EVK+S LRGRGGAGF
Sbjct: 1   MLNDKDRIFQNLYNDKGSDVESSKNRGDWVDTAEIIKKGREWIIEEVKSSELRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSF PK    RPHYLV+N DESEPGTCKDRDI+R EPH LIEGC+IAS+A+ AH 
Sbjct: 61  PTGLKWSFAPKELGSRPHYLVINGDESEPGTCKDRDILRFEPHKLIEGCLIASYAVQAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+  + + LQ A+DE Y   L+G N+   G+D+DI +H+GAGAYICGEETALL
Sbjct: 121 CYIYIRGEYFIDGQKLQKAIDEAYEKKLIGKNASGTGWDLDIYIHYGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILR+G  W++  G+  N GT
Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRKGGKWFASLGKAKNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISG+VN PC VEE MSI+  ELIE H GG+ GGWDNL AVIPGGSS+P +P     
Sbjct: 241 KIFCISGNVNKPCNVEEEMSISLKELIEVHAGGVIGGWDNLQAVIPGGSSMPIIPKKTCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L    SGLGTA ++V++   DIIK + R++ FYKHESCGQCTPCREG+GWM 
Sbjct: 301 TLTMDFDSLVAEKSGLGTAGIVVINNDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R++ER+ KG A K E+++L +V+  I G TICA G+ ++WP+QGL+++FR  IEER
Sbjct: 361 RMLERMAKGEASKDEVEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFRKEIEER 416


>gi|261327930|emb|CBH10907.1| NADH-ubiquinone oxidoreductase, mitochondrial,putative [Trypanosoma
           brucei gambiense DAL972]
          Length = 496

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 265/424 (62%), Positives = 320/424 (75%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G  +  +  RG W     +L KG DW+INE+KASGLRGRGGAGF 
Sbjct: 35  LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D    Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 95  SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++  A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG  G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G 
Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVEE MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LKE  +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ 
Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+  E+  + +VSK +EGRTICAL  AAAWP+QGL ++F PL+EERI++Y
Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLEERIEKY 454

Query: 420 HRCN 423
              N
Sbjct: 455 WEAN 458


>gi|288572802|ref|ZP_06391159.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568543|gb|EFC90100.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 589

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 157/425 (36%), Positives = 238/425 (56%), Gaps = 7/425 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59
           +  Q RI   N   +  + + + + R  +D + K++     + +  EV  SGLRGRGGAG
Sbjct: 104 MDKQVRIVLRNCGIIDPEKIDEYIEREGYDALKKVVSSMTSEQVYTEVLDSGLRGRGGAG 163

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F      D   Y+V NADE +PG   DR ++  +PH +IEG  I  +AIGA 
Sbjct: 164 FPTGLKWKFANLSKGD-EKYVVCNADEGDPGAFMDRSVLEGDPHAIIEGMAICGYAIGAS 222

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
              IY R E+    ++L  A+++    G LG +    G+  D+ +  GAGA++CGEETAL
Sbjct: 223 HGIIYCRAEYPLAIKNLNIAIEQAKERGFLGEDIMGSGFSFDLKIKEGAGAFVCGEETAL 282

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR +PPFPA  G++G PT +NNVE+ A V  I+R G+  +S +G   +RG
Sbjct: 283 IASIEGKRGMPRPRPPFPAQSGVFGKPTNINNVETYANVAWIIRNGSKEFSKYGIGKSRG 342

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +     VE  M +   E+I    GGI    +   AV  GG S  C+P   +
Sbjct: 343 TKVFALAGKIAKGGLVEVPMGMPIREVIYDIGGGIPDDKE-FKAVQMGGPSGGCIPKE-L 400

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ +   G+ +G+  ++VMD  T +I        F ++ESCG+C  CR GT  M
Sbjct: 401 LDTPVDYESINATGAIMGSGGMVVMDEDTCMIDVARFFLSFVQNESCGKCPFCRIGTKRM 460

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +++R+ KG  ++ +IDLL E+   I+  ++C LG  A  P+   IK F+      I  
Sbjct: 461 LEILDRITKGEGKESDIDLLLELCHQIKDGSLCGLGQTAPNPVLTTIKYFKDEYMAHIVD 520

Query: 419 YHRCN 423
            HRC 
Sbjct: 521 -HRCP 524


>gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 592

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + + D ++ G ++ + K+L       +++E+K SGLRGRGG 
Sbjct: 106 FYAKQKRLVLHNCGHINPERIEDYVANGGYEALRKVLTSMSPQEVVDEIKKSGLRGRGGG 165

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      D   Y+V NADE +PG   DR ++  +PH ++EG  I  +A+GA
Sbjct: 166 GFPTGLKWQFTRDAKGD-KKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAICGYAVGA 224

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + LQ A+ +    G LG N    G++  I +  GAGA++CGEETA
Sbjct: 225 DEGYIYVRAEYPLAIKRLQIAIKQAEEKGYLGENIFGSGFNFRIKIKAGAGAFVCGEETA 284

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG +G PR +PPFPA  GL+G PT +NNVE+ A VP I++ GA WY+  G E ++
Sbjct: 285 LLTSIEGNRGMPRPRPPFPAVKGLWGKPTNINNVETFANVPLIIKNGADWYASMGTEGSK 344

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M IT  ++     GG   G     AV  GG S  CLP   
Sbjct: 345 GTKIFALTGKVNNTGLVEVPMGITMRQI-IFDIGGGIKGGRKFKAVQIGGPSGGCLPEE- 402

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD +T ++        F + ESCG+C PCREGT  
Sbjct: 403 LLDLPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVAKFFLRFTQKESCGKCVPCREGTKR 462

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++ +G  +  +++ L +++ NI+  ++C LG  A  P+   ++ FR   E  I 
Sbjct: 463 MLEILEKITEGKGEPGDLETLEKLAYNIKNSSLCGLGQTAPNPVLSTLRYFRHEYEAHIY 522

Query: 418 QYHRCN 423
              +C 
Sbjct: 523 D-KKCP 527


>gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
 gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
          Length = 624

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 170/426 (39%), Positives = 255/426 (59%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q+RI  +N   +  + L D ++ G +  + K L E   + +  EV  SGLRGRGG 
Sbjct: 138 FYANQNRIALSNCGNIDPEDLDDYLAHGGYKALSKALLEMSPEEVCKEVTESGLRGRGGG 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW F  +  +D   Y++VN DE +PG   DR IM  +PH +IEG  IA +A GA
Sbjct: 198 GFPTGKKWEFAYREKAD-QKYVIVNGDEGDPGAFMDRSIMEGDPHRVIEGITIAGYATGA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++ Y  GLLG +    G+D D+++  GAGA++CGEETA
Sbjct: 257 TKGYIYVRAEYPLAVKRLRKAINDAYDQGLLGEDILGSGFDFDLMIKEGAGAFVCGEETA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G P  KPPFPA  GL+G PTT+NNVE++A VP I+ +GA W++  G EN+ 
Sbjct: 317 LMASIEGKRGMPNPKPPFPAQSGLWGKPTTINNVETLANVPQIILKGADWFTSLGTENSP 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+I+G V     +E  M +T  EL+    GGI+       AV  GG S  CL    
Sbjct: 377 GTKTFAITGDVANTGLIEVPMGMTLRELVYDIGGGIKNNNK-FKAVQIGGPSGGCLTEEH 435

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MD+D L+E+G+ +G+  ++VMD +T +++       F ++ESCG+C  CREGT  
Sbjct: 436 L-DMPMDFDSLQEVGAMIGSGGLVVMDENTCMVEVARFFMEFTQNESCGKCVLCREGTKQ 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M++++ER+V+G     ++DLL E++  ++  ++C LG  A  P+   +K FR   E  + 
Sbjct: 495 MLKILERIVEGKGTMEDLDLLEELALAVKDGSLCGLGKTAPNPVLTTLKYFRDEYEAHVK 554

Query: 418 QYHRCN 423
              +C 
Sbjct: 555 D-KKCP 559


>gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
 gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
          Length = 593

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 156/421 (37%), Positives = 244/421 (57%), Gaps = 6/421 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++++ ++R  +  ++K L E   + I++E+K SGLRGRGGA
Sbjct: 108 FYQKQLRIVLRNCGVINPENINEYIARDGYLALEKALFELTPEQIVDEIKKSGLRGRGGA 167

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K   D   Y+V NADE +PG   DR  +  +PH++IE  +I   AIGA
Sbjct: 168 GFPTGLKWEAGMKASGD-VKYVVCNADEGDPGAYMDRSTIEGDPHSIIEAMIICGKAIGA 226

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  F+Y+R E+    + L+ A+ + + +GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 227 HQGFVYIRAEYPLAIDRLRIAMAQAHENGLLGKNILGSGFDFDIEIRLGAGAFVCGEETA 286

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++G P  KPPFPA  GL+G PT +NNVE+ A +P IL +GA W++  G ++++
Sbjct: 287 LLRSIEGQRGMPTPKPPFPAQCGLWGKPTVINNVETWANIPVILTKGADWFNKIGTDDSK 346

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M  T  E+I +  GGI+        V  GG S   +    
Sbjct: 347 GTKVFALTGKVNNSGLVEVPMGTTLREIIFEIGGGIK-NGKKFKGVQTGGPSGGIITEEH 405

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+  L ++GS +G+  +IVMD    ++        F   ESCG+C+PCR GT  
Sbjct: 406 L-DTPIDFGALIKLGSMMGSGGMIVMDEDDCVVDVAKFYMEFCVDESCGKCSPCRIGTRQ 464

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++E++ +G  +  ++  L ++ + ++  ++CALG +A  P    I+ F     + I 
Sbjct: 465 MYTILEKISRGNGEMDDLQKLKDIGQAMKTSSLCALGQSAPNPTLSTIRKFEQEYIDHIR 524

Query: 418 Q 418
            
Sbjct: 525 N 525


>gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
 gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
          Length = 600

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 247/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + ++ G ++   K L       +I+E+K SGLRGRGG 
Sbjct: 113 FYKKQKRISLKNCGHIDPEDIDEYIALGGYEAAGKALTLMEPQGVIDELKESGLRGRGGG 172

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F     SD   Y++ NADE +PG   DR ++  +PH +IEG +IA++AIGA
Sbjct: 173 GFPTGLKWQFARNTESD-KKYVICNADEGDPGAFMDRSLLEGDPHVIIEGMMIAAYAIGA 231

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+      L+ A+ +    GLLG N    G+D  + +  GAGA++CGEETA
Sbjct: 232 DEGYVYVRAEYPLAITRLEKAIKDAEEYGLLGENIFNSGFDFKLHIKKGAGAFVCGEETA 291

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G P+ +PP+P+  GL+G PT +NNVE+ A VP I+  G+  +S  G E++ 
Sbjct: 292 LMNSIEGKRGMPKPRPPYPSVSGLWGKPTNINNVETFANVPFIINEGSEAFSSIGTESSA 351

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I +  GG+        AV  GG S  CLP   
Sbjct: 352 GTKVFALTGKINNTGLVEVPMGTTLREVIFEIGGGLDKN-KKFKAVQTGGPSGGCLPEEY 410

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD  + ++        F + ESCG+CTPCREGT  
Sbjct: 411 L-NLPIDYDSLLDAGTMMGSGGMVVMDEDSCMVDVARFFLNFTQSESCGKCTPCREGTKR 469

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+  G  ++ +I+LL E+  +I+  ++C LG +A  P+   I +FR   E  I 
Sbjct: 470 MLEILNRITTGEGREGDIELLEELGDHIKSTSLCGLGKSAPNPVLSTITHFRKEYEAHIH 529

Query: 418 QYHRCN 423
           + + C 
Sbjct: 530 KQN-CP 534


>gi|71402029|ref|XP_803973.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma cruzi
           strain CL Brener]
 gi|70866690|gb|EAN82122.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma cruzi]
          Length = 484

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 267/424 (62%), Positives = 321/424 (75%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G  ++ +  RG W     +L KG DW+I E+KASGLRGRGGAGF 
Sbjct: 23  LKDQDRIFLNLYNDFGTDITSAERRGDWYRTKDLLLKGHDWVIAEMKASGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPKV  D    YLVVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 83  SGLKWSFMPKVKPDGRPSYLVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+RGEF  E  S++ A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 143 GFIYIRGEFYNEWRSVERAIQEAYAKGYLGRNACGSGYDFDLYTYRGAGAYICGEETAMI 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG  G+PRLKPPFPANVGLYGCPTTV N E+++V PTILRRG  W+S FGR+NN G 
Sbjct: 203 SSLEGGPGKPRLKPPFPANVGLYGCPTTVTNAETVSVSPTILRRGPQWFSSFGRKNNAGV 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVE+ MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 263 KLFCICGHVNRPCTVEDEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 322

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MDYD LKE+ +GLGTAAVIVMD+STD+I AI R+S FY +ESCGQCTPCREG+ W+ 
Sbjct: 323 NVLMDYDSLKEVQTGLGTAAVIVMDKSTDLIAAIHRISKFYANESCGQCTPCREGSPWLE 382

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M R V G A+K EI  + +VSK +EGRTICAL  AAAWP+QGL ++F P++EERI++Y
Sbjct: 383 KMMRRFVHGNAKKEEIGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPMLEERIERY 442

Query: 420 HRCN 423
              N
Sbjct: 443 WEAN 446


>gi|188593015|emb|CAQ55523.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei TREU927]
          Length = 496

 Score =  508 bits (1309), Expect = e-142,   Method: Composition-based stats.
 Identities = 264/424 (62%), Positives = 320/424 (75%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G  +  +  RG W     +L KG DW+INE+KASGLRGRGGAGF 
Sbjct: 35  LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D    Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 95  SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++  A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG  G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G 
Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVEE MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LKE  +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ 
Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+  E+  + +VSK +EGRTICAL  AAAWP+QGL ++F PL++ERI++Y
Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLQERIEKY 454

Query: 420 HRCN 423
              N
Sbjct: 455 WEAN 458


>gi|72388848|ref|XP_844719.1| NADH-ubiquinone oxidoreductase, mitochondrial [Trypanosoma brucei
           TREU927]
 gi|62176128|gb|AAX70246.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei]
 gi|70801253|gb|AAZ11160.1| NADH-ubiquinone oxidoreductase, mitochondrial, putative
           [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
          Length = 496

 Score =  508 bits (1308), Expect = e-142,   Method: Composition-based stats.
 Identities = 264/424 (62%), Positives = 320/424 (75%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLY   G  +  +  RG W     +L KG DW+INE+KASGLRGRGGAGF 
Sbjct: 35  LKDQDRIFVNLYQDFGTDIDSAERRGDWYRTRDLLLKGHDWVINEIKASGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D    Y+VVN DESEPGTCKDR+IMRHEPH L+EG +IA FA+ A  
Sbjct: 95  SGLKWSFMPKSKPDGRPSYIVVNGDESEPGTCKDREIMRHEPHKLVEGALIAGFAMRARY 154

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGEF  E  ++  A+ E YA G LG N+   GYD D+  + GAGAYICGEETA++
Sbjct: 155 GYIYIRGEFYNEWRAVDQAIKEAYARGYLGRNACGSGYDFDLYTYCGAGAYICGEETAMI 214

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG  G+PRLKPPFPANVGLYGCPTTV NVE+++V PTILRRG SW++ FGR NN G 
Sbjct: 215 SSIEGGPGKPRLKPPFPANVGLYGCPTTVTNVETVSVSPTILRRGPSWFNSFGRRNNAGV 274

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF I GHVN PCTVEE MSI   +LIE+H GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 275 KLFCICGHVNRPCTVEEEMSIPLRDLIERHAGGVRGGWDNLLAVIPGGSSCPLIPKSICD 334

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LKE  +GLGTAAVIVMD+STD+I AI RLS+FY HESCGQCTPCREG+ W+ 
Sbjct: 335 NVLMDFDALKEAQTGLGTAAVIVMDKSTDLIAAIHRLSMFYAHESCGQCTPCREGSPWLE 394

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++M+R V G A+  E+  + +VSK +EGRTICAL  AAAWP+QGL ++F PL++ERI++Y
Sbjct: 395 KMMQRFVHGNARMEEVGTMLDVSKQLEGRTICALATAAAWPVQGLARHFTPLLQERIEKY 454

Query: 420 HRCN 423
              N
Sbjct: 455 WEAN 458


>gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
 gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
          Length = 595

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 153/426 (35%), Positives = 230/426 (53%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +  G +  + K+L E   D +I  +  SGLRGRGGA
Sbjct: 109 FYKKQHRIALRNCGVINPEEIEEYIGTGGYQALGKVLTEMTPDEVIQVLLDSGLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    +  +D   Y+  NADE +PG   DR ++  +PH L+E   IA +AIGA
Sbjct: 169 GFPTGLKWKLASQNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHALLEAMTIAGYAIGA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++     LLG +    G+  +I +  GAGA++CGEETA
Sbjct: 228 SQGYIYVRAEYPIAVQRLKIAIEQARKMELLGDDIFGSGFSFNIDLRLGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +P I+  G  W++  G E ++
Sbjct: 288 LMVSIEGNRGEPRPRPPFPAQKGLFGKPTILNNVETYANIPQIILNGPEWFASMGTEKSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G ++    VE  M  T  E+  +  GG         A   GG S  C+P   
Sbjct: 348 GTKVFALGGKIHNTGLVEVPMGTTLREI-IEEIGGGIPNGKKFKAAQTGGPSGGCIPVEH 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD L  +GS +G+  +IVMD +  ++        F   ESCG+CTPCR GT  
Sbjct: 407 Y-DIPIDYDNLISIGSMMGSGGLIVMDETDCMVDIAKFFLEFTVEESCGKCTPCRIGTKR 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  +++++ KG A   ++D L E+   ++  + C LG  A  P+   +K FR      I 
Sbjct: 466 MHEILDKITKGQATLEDLDRLEELCYYVKENSACGLGQTAPNPVLSTLKFFRDEYNAHIV 525

Query: 418 QYHRCN 423
               C 
Sbjct: 526 D-KTCP 530


>gi|269958707|ref|YP_003328494.1| NADH dehydrogenase subunit F [Anaplasma centrale str. Israel]
 gi|269848536|gb|ACZ49180.1| NADH dehydrogenase subunit F [Anaplasma centrale str. Israel]
          Length = 430

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 261/422 (61%), Positives = 319/422 (75%), Gaps = 2/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           +  +D +FTNL G +   L  + +RG WD   +ILE G D II EVK SGLRGRGGAGF 
Sbjct: 1   MKSEDAVFTNLAGRECPYLEAARARGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG+KW FMPK     RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G   
Sbjct: 61  TGVKWGFMPKARPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A++Y+RGEF  E   L  A+DE Y  GL+G N+   GYD+DI +H GAGAYICGEE+A L
Sbjct: 121 AYVYIRGEFYNEYLVLSRALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG+KG PRLKPPFPA VGLYGCPTTVNN+E++AVV  I+RRG+ W++  G+ NN GT
Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTVNNIETVAVVGDIMRRGSQWFASLGKPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVVGGWDNLLAVIPGGSSVPMLPKSICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M+++V G A+  EID L +V+  IEG TICAL DAA WPIQGL ++FR ++E+RI   
Sbjct: 361 RMMKKMVDGTAKDGEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRIGNK 420

Query: 420 HR 421
            +
Sbjct: 421 GK 422


>gi|164687260|ref|ZP_02211288.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
 gi|164603684|gb|EDQ97149.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
          Length = 584

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 242/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
           ++  Q RI   N   +  + + + ++R  +   +K+L     + +I+ +K SGLRGRGGA
Sbjct: 98  LMKKQKRIVLRNCGSINPEEIDEYIARDGYKATEKVLTTMTDEEVIDVIKVSGLRGRGGA 157

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW+   +  +D   Y+V NADE +PG   DR ++  +PH+L+EG +I  +A+GA
Sbjct: 158 GFPTWFKWNAARQNKAD-QKYIVCNADEGDPGAFMDRAVLEGDPHSLLEGMIIGGYAMGA 216

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IYVR E+    + L+ A+ +    G LG N    G+D DI +  GAGA++CGEETA
Sbjct: 217 TEGVIYVRAEYPLAIKRLEIAIAQAKERGYLGKNIFSSGFDFDIRIKEGAGAFVCGEETA 276

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PRLKPPFPA  G +  PT +NNVE+ A V  I+  G   +   G + + 
Sbjct: 277 LIASLEGERGMPRLKPPFPAQKGYWQKPTNINNVETYANVAWIMLNGGDTFGSMGTKTSN 336

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M I+  E+I    GGI+   +   AV  GG S  C+PA  
Sbjct: 337 GTKVFALAGKIKKGGLVEVPMGISLREVIYDIGGGIKEDKE-FKAVQMGGPSGGCIPAS- 394

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ + + G+ +G+  +IVMD +T ++        F + ESCG+C  CR GT  
Sbjct: 395 LIDTPVDYENINKTGAIVGSGGMIVMDETTCMVDMARYFLDFTRKESCGKCNYCRIGTKR 454

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+  G  +  +I+LL E++  ++   +C LG  A  P+   +K FR   E+ I 
Sbjct: 455 MLEILERITNGEGKDGDIELLEELAYKVKDGAMCGLGQTAPNPVITTLKYFRHEYEDHIY 514

Query: 418 QYHRCN 423
              +C 
Sbjct: 515 N-KKCT 519


>gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479]
 gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479]
          Length = 573

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 231/426 (54%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +  G +  + K+L E   D +I  +  SGLRGRGGA
Sbjct: 87  FYKKQHRIALRNCGVINPEVIEEYIGTGGYQALGKVLTEMTPDDVIQVLLDSGLRGRGGA 146

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW       +D   Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA
Sbjct: 147 GFPTGLKWKLAKGNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHAVLEAMTIAGYAIGA 205

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++     LLG +    G+  +I +  GAGA++CGEETA
Sbjct: 206 SQGYIYVRAEYPIAVQRLKIAIEQAREMELLGDDIFGSGFSFNIDLRLGAGAFVCGEETA 265

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +P I+  G  W++  G E ++
Sbjct: 266 LMVSIEGNRGEPRPRPPFPAQKGLFGKPTILNNVETWANIPQIILNGPEWFASMGTEKSK 325

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G ++    VE  M  T  E+  +  GG         A   GG S  C+PA  
Sbjct: 326 GTKVFALGGKIHNTGLVEVPMGTTLREI-IEEIGGGIPNGKKFKAAQTGGPSGGCIPAEH 384

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR GT  
Sbjct: 385 -FDIPIDYDNLVAIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTPCRIGTKR 443

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++ KG A   ++D L E+   I+  + CALG  A  P+   ++ FR      I 
Sbjct: 444 MLEILEKITKGQATMADLDKLEELCYYIKANSACALGQTAPNPVLSTLQYFRDEYVAHIV 503

Query: 418 QYHRCN 423
               C 
Sbjct: 504 D-KTCP 508


>gi|222099432|ref|YP_002534000.1| NADP-reducing hydrogenase, subunit C [Thermotoga neapolitana DSM
           4359]
 gi|221571822|gb|ACM22634.1| NADP-reducing hydrogenase, subunit C [Thermotoga neapolitana DSM
           4359]
          Length = 545

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 172/423 (40%), Positives = 253/423 (59%), Gaps = 6/423 (1%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           +++ RI   N+  +    + + ++R  +  + K L+   + II E+K SGLRGRGGAGF 
Sbjct: 107 SEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMKPEEIIEEIKRSGLRGRGGAGFP 166

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW F  K  SD   Y++ NADE EPGT KDR IM  +PH+LIEG +IA +A+GA   
Sbjct: 167 TGLKWEFTYKASSD-QKYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGARKG 225

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+    E L+ A+++ Y  G LG N    G+  D+ +  GAGAY+ GEETAL+E
Sbjct: 226 YIYIRGEYYSSIEILKRAIEQAYEYGFLGENILGTGFSFDLKIRLGAGAYVAGEETALIE 285

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK  +PRLKPP+P   GL+G PT VNNVE+   VP I+  GA W+  FG E++ GTK
Sbjct: 286 SIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIILNGADWFRKFGTESSPGTK 345

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G+V     VE  M +T  +LI K  GG+  G   L  V  GGS+   +   ++  
Sbjct: 346 VFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGVEKG-KRLKLVQTGGSAGTFIGPDKL-D 403

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D   + G  LG+  ++V D S   +     +  F++HESCG+CTPCREGT   + 
Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADESHCAVDLALTVMRFFEHESCGKCTPCREGTRIAVE 463

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+ +G  +K ++DLL +V++N    + C LG +   P+  ++ NF       I +  
Sbjct: 464 ILERISRGEGRKEDLDLLRKVAENAGETSFCGLGQSIPVPLLSIVNNFEDEFRAHI-ESK 522

Query: 421 RCN 423
            C 
Sbjct: 523 ECP 525


>gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
 gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
          Length = 630

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + ++   +  + K L     D ++ EV  SG+RGRGGA
Sbjct: 144 FYRKQKRIALRNCGVIDPEDIEEYIATDGYQALYKALTSMTPDEVVKEVLDSGIRGRGGA 203

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW F      D   Y+  NADE +PG   DR I+  +PH +IE   IAS+A+GA
Sbjct: 204 GFPTGRKWMFTKDAPGD-VKYVACNADEGDPGAFMDRSILEGDPHAVIEAMTIASYAVGA 262

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  ++YVR E+      LQ A+D+    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 263 HQGYVYVRAEYPVAVNRLQIALDQAREYGLLGKNILGTGHDFDIEIRLGAGAFVCGEETA 322

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +  I+R+GA+WYS  G E ++
Sbjct: 323 LLTSIEGNRGEPRPRPPFPAVKGLFGKPTLLNNVETYANIAQIIRKGAAWYSAMGTEKSK 382

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +     VE  M  T  E+  +  GG         A   GG S  C+PA  
Sbjct: 383 GTKVFALGGKITNVGLVEIPMGTTLREI-IEEIGGGIPDGKAFKAAQTGGPSGGCIPAQH 441

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR GT  
Sbjct: 442 I-DTPIDYESLAALGSMMGSGGLIVMDEDNCMVDVSKFYLNFTVDESCGKCTPCRVGTRK 500

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +++++E++  G  +  +++ + +++ +++  ++CALG +A  P+   ++ F       I 
Sbjct: 501 LLQLLEKITDGKGEMEDLEKIQDLATHMKSSSLCALGQSAPNPVLSTLQYFGDEYLAHIK 560

Query: 418 QYHRCN 423
           +  +C 
Sbjct: 561 E-KKCP 565


>gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 596

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + ++++   +  + K+L       +I EVK SGLRGRGG 
Sbjct: 110 FFRKQKRIALRNCGIINPEDIREAIAFDGYKALAKVLTQMTPKEVIEEVKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + L+ A+++    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ G++G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W+S  G E ++
Sbjct: 289 LLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E+I +  GGI        A   GG S  C+PA  
Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  ++VMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 L-DTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G  ++ +I+ L E++K I+   +C LG  A  P+   I+ FR   E  I 
Sbjct: 467 MLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIK 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-KRCP 531


>gi|307297600|ref|ZP_07577406.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916860|gb|EFN47242.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 599

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 165/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T+Q RI T NL  +   S+ + ++R  +  + K+L E G D +I  ++ S L+GRGGA
Sbjct: 111 FFTEQVRIATRNLGVIDPLSIDEYIARDGYFALHKVLFEIGIDDVIEILRKSELKGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T MKW F  K   D   Y++ NADE +PG   DR ++  +PH+++E   IA+  +GA
Sbjct: 171 GFPTWMKWDFTKKAEGD-TKYVICNADEGDPGAFMDRAVLEGDPHSIVEAMTIAARVVGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F+YVR E+    E L  A+      G LG N     +  D+ +  GAGA++CGEETA
Sbjct: 230 QKGFVYVRAEYPLAIERLTHAMKMAREYGFLGENILGTDFSFDLEIRIGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR+KPPFPAN GL+  PT +NNVE+ A +P I+  G  W+S FG E +R
Sbjct: 290 LINSIEGKRGIPRVKPPFPANKGLWQKPTLLNNVETFANIPPIINNGGEWFSQFGVEGSR 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G+V     VE  M IT  +LI +  GG+  G   L A+  GG S  C+P   
Sbjct: 350 GTKVFALAGNVKNTGLVEVPMGITLRKLIFEIGGGVP-GGKKLKAIQTGGPSGGCIPLE- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + YD +K++G+ +G+  +IVMD  + ++        F   ESCGQCTPCR+GT  
Sbjct: 408 LIDTPITYDNMKKLGTIIGSGGMIVMDEDSCMVDVAKYFLEFTVEESCGQCTPCRDGTRR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+  G     ++ LL ++ +NI   ++C LG  A  P+   ++ F    E  + 
Sbjct: 468 MLEILERITSGEGTMEDLQLLKDLGENIMATSLCGLGQTAPQPVISTMRYFWNEYEAHVK 527

Query: 418 QYHRCN 423
              RC 
Sbjct: 528 D-GRCP 532


>gi|56416878|ref|YP_153952.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. St.
           Maries]
 gi|222475243|ref|YP_002563659.1| NADH dehydrogenase I chain F (nuoF) [Anaplasma marginale str.
           Florida]
 gi|255003227|ref|ZP_05278191.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. Puerto
           Rico]
 gi|56388110|gb|AAV86697.1| NADH dehydrogenase chain F [Anaplasma marginale str. St. Maries]
 gi|222419380|gb|ACM49403.1| NADH dehydrogenase I chain F (nuoF) [Anaplasma marginale str.
           Florida]
          Length = 430

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 265/422 (62%), Positives = 317/422 (75%), Gaps = 2/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           +  +D  FTNL G +   L  +  RG WD   +ILE G D II EVK SGLRGRGGAGF 
Sbjct: 1   MKSEDAAFTNLAGRESPYLGAAKKRGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG KWSFMPK     RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G   
Sbjct: 61  TGTKWSFMPKTRPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L  A+DE Y  GL+G N+   GYD+DI +H GAGAYICGEE+A L
Sbjct: 121 AYIYIRGEFYNEYLVLSQALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG+KG PRLKPPFPA VGLYGCPTT+NNVE++AVV  I+RRG+ W+S  GR NN GT
Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTINNVETVAVVADIMRRGSKWFSSLGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKSVCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M+++V G A+  EID L +V+  IEG TICAL DAA WPIQGL ++FR ++E+RI   
Sbjct: 361 RMMKKMVDGTAKDGEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRIGNK 420

Query: 420 HR 421
            +
Sbjct: 421 GK 422


>gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
          Length = 596

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + ++++   +  + K+L       +I EVK SGLRGRGG 
Sbjct: 110 FFRKQKRIALRNCGIINPEDIREAIAFDGYRALAKVLTQMTPKEVIEEVKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + L+ A+++    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ G++G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W+S  G E ++
Sbjct: 289 LLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E+I +  GGI        A   GG S  C+PA  
Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  ++VMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 L-DTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G  ++ +I+ L E++K I+   +C LG  A  P+   I+ FR   E  I 
Sbjct: 467 MLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIK 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-KRCP 531


>gi|91761992|ref|ZP_01263957.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717794|gb|EAS84444.1| NADH Dehydrogenase I Chain F [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 443

 Score =  506 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 253/416 (60%), Positives = 320/416 (76%), Gaps = 1/416 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIF NLY  +G  +  S +RG W +  +I++KGR+WII EVK+S LRGRGGAGF
Sbjct: 1   MLNDKDRIFQNLYNDKGSDVESSKNRGDWVDTAEIIKKGREWIIEEVKSSELRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSF PK    RPHYLV+N DESEPGTCKDRDI+R EP  LIEGC+IAS+A+ AH 
Sbjct: 61  PTGLKWSFAPKELGSRPHYLVINGDESEPGTCKDRDILRFEPQKLIEGCLIASYAVQAHV 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+  + + LQ A+DE Y   L+G N+   G+D+DI +H+GAGAYICGEETALL
Sbjct: 121 CYIYIRGEYFIDGQKLQKAIDEAYEKKLIGKNASGTGWDLDIYIHYGAGAYICGEETALL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKGQPRLKPPFPA +GLYGCPT +NNVE+IAVVPTILR+G  W++  G+  N GT
Sbjct: 181 ESIEGKKGQPRLKPPFPALIGLYGCPTIINNVETIAVVPTILRKGGKWFASLGKAKNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISG+VN PC VEE MSI+  ELIE H GG+ GGWDNL AVIPGGSS+P +P     
Sbjct: 241 KIFCISGNVNKPCNVEEEMSISLKELIEVHAGGVIGGWDNLQAVIPGGSSMPIIPKKTCE 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L    SGLGTA ++V++   DIIK + R++ FYKHESCGQCTPCREG+GWM 
Sbjct: 301 TLTMDFDSLVAEKSGLGTAGIVVINNDQDIIKCMARIARFYKHESCGQCTPCREGSGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           R++ER+ KG A K E+++L +V+  I G TICA G+ ++WP+QGL+++FR  IE+R
Sbjct: 361 RMLERMAKGEASKDEVEMLGDVTNQIAGHTICAFGEGSSWPVQGLLRHFRKEIEKR 416


>gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 628

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 164/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + ++   +  + K+L       ++ EVK +GLRGRGG 
Sbjct: 142 FFRKQQRIALRNCGTIDPEDIDEYIAMNGYKALHKVLTTMEPAQVVAEVKEAGLRGRGGG 201

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K  +  P Y++ NADE +PG   DR I+  +PH+++EG  IA +AIGA
Sbjct: 202 GFPTGIKWETAAKQQTG-PKYMICNADEGDPGAFMDRSILEGDPHSVLEGMAIAGYAIGA 260

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
           +  FIYVR E+      +QAA+ +    GLLG +    G+  DI V  GAGA++CGEETA
Sbjct: 261 NHGFIYVRAEYPIAVRRVQAAIKQARDYGLLGEDLFGTGFSFDISVRLGAGAFVCGEETA 320

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G P  KPPFPA  GL+G PT +NNVE++A VP I+ +GASWY+  G E ++
Sbjct: 321 LMNSVEGKRGMPNPKPPFPAVSGLWGQPTVINNVETLANVPIIMLKGASWYASIGTEKSK 380

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     VE  M IT  ++I +  GGI GG     AV  GG S  CL +  
Sbjct: 381 GTKVFALGGKVVNTGLVEVPMGITLRDVIYEIGGGIPGG-KAFKAVQTGGPSGGCLTSEH 439

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  ++VMD  T ++        F + ESCG+C PCR GT  
Sbjct: 440 L-DRPIDYDTLLSLGSMMGSGGMLVMDEETCMVDVARYYLDFTRDESCGKCAPCRIGTKR 498

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++E++ +G     +++ L ++S+ I+  ++C LG  A  P+   +K FR      + 
Sbjct: 499 LLEILEKITEGKGTMEDLNALEDLSEQIKAASLCGLGQTAPNPVLSTLKYFREEYIAHVV 558

Query: 418 QYHRCN 423
              +C 
Sbjct: 559 D-KKCP 563


>gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
 gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
          Length = 625

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 162/425 (38%), Positives = 246/425 (57%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + + D+++ G ++  +K   E   + +I  +  S LRGRGGA
Sbjct: 139 FYAKQTRLVLKNCGHIDAEHIEDALAVGAYEAFEKAVFEMTPEAVIKTITQSNLRGRGGA 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWS +     ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+ A
Sbjct: 199 GFQTGRKWSQVAGQK-EKIRYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMMIAAYAVQA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +    G+LG N    G+   + ++ GAGA++CGE +A
Sbjct: 258 QEGYIYVRAEYPLAVSRLRIAIRQAEELGILGDNILGTGFSFHLHINRGAGAFVCGEGSA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+G PT +NNVE+ A VP I++ GA WY+G G   + 
Sbjct: 318 LTASIEGKRGMPRVKPPRTVEKGLFGKPTVLNNVETYANVPMIVKHGADWYTGIGTPESP 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G+VN    +E  M IT  E+I    GGIR       AV  GG S  CL   Q
Sbjct: 378 GTKAFALTGNVNNTGLIEVPMGITLREIIFDIGGGIR-DGKKFKAVQIGGPSGGCLTESQ 436

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  + MD+D L ++G+ +G+  ++VMD +T +++       F + ESCG+C PCREGT  
Sbjct: 437 L-DSKMDFDSLTKIGAMIGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKR 495

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  ++ +I+ L E++  IE   +C LG +A  P+   I+ FR   EE I 
Sbjct: 496 MLEILERIVAGEGREGDIEELEELADMIENTALCGLGKSAPKPVISTIQAFREEYEEHIR 555

Query: 418 QYHRC 422
              +C
Sbjct: 556 D-KKC 559


>gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 597

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 167/426 (39%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + +++ ++   +  ++K+L E   + +I+ +K SGLRGRGG 
Sbjct: 111 FFNRQMRIALRNCGRINPEDINEYIAFDGYKALEKVLTEMTPEAVIDTMKKSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  +D   Y+  NADE +PG   DR ++  +PH++IE   IA FAIGA
Sbjct: 171 GFPTGVKWEFAAKQTAD-QKYVCCNADEGDPGAFMDRSVLEGDPHSVIEAMSIAGFAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+    + LQ A+DE    G+LG N    G+  ++ +  GAGA++CGEETA
Sbjct: 230 TQGFIYVRAEYPIAVKRLQLAIDEAKEYGILGDNVLGTGHKFNLEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A VP I+ +GA W+SG G E ++
Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWEKPTILNNVETYANVPVIILKGAEWFSGIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E++    GGI  G     A   GG S  C+PA  
Sbjct: 350 GTKVFALGGKINNTGLVEVPMGTTLREVVYDIGGGIPNG-KKFKAAQTGGPSGGCIPASH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD    ++        F   ESCG+C PCR GT  
Sbjct: 409 L-DTPIDYDSLIALGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCPPCRIGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  +  +I+ L  ++KNI+   +C LG  A  PI   +K FR   E  + 
Sbjct: 468 MLEILERITEGKGEAGDIEKLELLAKNIKASALCGLGQTAPNPILSTLKYFRDEYEAHVF 527

Query: 418 QYHRCN 423
              +C 
Sbjct: 528 D-KKCP 532


>gi|126701029|ref|YP_001089926.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile 630]
 gi|254977028|ref|ZP_05273500.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-66c26]
 gi|255094355|ref|ZP_05323833.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile CIP 107932]
 gi|255102609|ref|ZP_05331586.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-63q42]
 gi|255308435|ref|ZP_05352606.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile ATCC 43255]
 gi|255316108|ref|ZP_05357691.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-76w55]
 gi|255518769|ref|ZP_05386445.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-97b34]
 gi|255651947|ref|ZP_05398849.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-37x79]
 gi|255657359|ref|ZP_05402768.1| putative iron-only hydrogenase,electron-transferring subunit
           [Clostridium difficile QCD-23m63]
 gi|260684911|ref|YP_003216196.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260688569|ref|YP_003219703.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|296451827|ref|ZP_06893546.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
 gi|296879777|ref|ZP_06903751.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
 gi|306521696|ref|ZP_07408043.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile QCD-32g58]
 gi|115252466|emb|CAJ70309.1| putative iron-only hydrogenase,electron-transferring subunit
           HymB-like [Clostridium difficile]
 gi|260211074|emb|CBA66445.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile CD196]
 gi|260214586|emb|CBE07152.1| putative iron-only hydrogenase, electron-transferring subunit
           [Clostridium difficile R20291]
 gi|296259306|gb|EFH06182.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP08]
 gi|296429248|gb|EFH15121.1| NADH dehydrogenase (quinone) [Clostridium difficile NAP07]
          Length = 628

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 140/428 (32%), Positives = 233/428 (54%), Gaps = 8/428 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +   S+ + ++   +  + K L       +I EVK SGLRGRGGA
Sbjct: 140 FYKKQLRIALKNCGLIDPDSIEEYIANDGYLALGKCLTSLTPQEVIAEVKTSGLRGRGGA 199

Query: 59  GFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           GF TG KW    K  +      ++V NADE +PG   DR ++  +PH+++E   I  +AI
Sbjct: 200 GFPTGSKWEAASKNPAGPTDKKFVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAICGYAI 259

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175
           G+   +IY+R E+ +  E L+ A+ +    GLLG N    G++  + + +GAGA++CGE 
Sbjct: 260 GSDTGYIYIRAEYPKSIERLKVAIAQAEKYGLLGENILGTGFNFKLELKYGAGAFVCGEG 319

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ S+EG++G+PR+K    +  GL+  PT +NNVE+ A +P I+ +G  W++  G E+
Sbjct: 320 TALMHSIEGRRGEPRMKTYSSSKSGLWKSPTCLNNVETFANIPAIILKGGDWFANLGTED 379

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           + GTK+F++ G V     VE  M  T  +++ +  GGI        AV  GG S  C+P 
Sbjct: 380 SSGTKVFALGGKVENVGLVEVPMGTTLRDIVFEIGGGIP-EGKKFKAVQTGGPSGGCIPT 438

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +    +D+  L  +GS +G+  ++V+D S  ++        F   ESCG+CTPCR GT
Sbjct: 439 EHL-DTPIDFGSLSSIGSMMGSGGMLVLDESDCMVDIAKFFLEFTVEESCGKCTPCRIGT 497

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             ++ ++ ++ +G    +++D L  +++ I+  ++C LG AA  P+   ++ F+      
Sbjct: 498 TRLLEILTKITEGNGTLQDLDDLENLAETIQTASLCGLGKAAPNPVLSTLQYFKDEYIAH 557

Query: 416 IDQYHRCN 423
           +    +C 
Sbjct: 558 VVD-KKCP 564


>gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
 gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
          Length = 622

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 149/423 (35%), Positives = 241/423 (56%), Gaps = 6/423 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + ++ G ++ ++K+L +  ++  ++E+  SGLRGRGGA
Sbjct: 136 FYEKQTRIVLKNCGHIDAEHIEEYIAVGGYEGLEKVLFDMTKEEGLDEILKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW+ + K    +  Y+V N DE +PG   DR IM  +PH +IEG +I ++ +GA
Sbjct: 196 GFPTGRKWAEVAKQP-VKERYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMIIGAYLVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L+ A+ +    GLLG N    G++  + ++ GAGA++CGE +A
Sbjct: 255 QNGYIYVRAEYPLAVERLKIAIAQAEERGLLGDNILGSGFNFRLHINRGAGAFVCGEGSA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP  A  GL+  PT +NNVE+ A VP I+  G+ WY GFG E + 
Sbjct: 315 LTASIEGNRGMPRVKPPRSAEKGLFERPTVLNNVETYANVPMIIANGSDWYRGFGTEGSP 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G VN    +E  M  T  E++    GG++       AV  GG S  CL   +
Sbjct: 375 GTKAFALTGSVNNTGLIEVPMGTTLREIVYDIGGGVKDNVP-FKAVQIGGPSGGCL-VEK 432

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +D+D +K++ + +G+  ++VMD ++ ++        F + ESCG+CTPCR GT  
Sbjct: 433 HLDLPLDFDSVKKLNAIMGSGGLVVMDENSCMVDVARFFMSFTQRESCGKCTPCRIGTKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++ +G     ++D L E +  +   ++C LG +A  P+   ++ FR   EE I 
Sbjct: 493 MLEILDKITEGKGTLEDLDKLEETANTVRTMSLCGLGKSAPLPVISTLELFRHEYEEHIV 552

Query: 418 QYH 420
              
Sbjct: 553 DGK 555


>gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
 gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
          Length = 659

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 166/425 (39%), Positives = 245/425 (57%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q RI   N   +  + L + ++R  +    K L   R  +I EVK SGLRGRGGAG
Sbjct: 174 FYARQHRIVLANCGHINPEDLGEYLARQGYRGFLKALAMERAAVIAEVKRSGLRGRGGAG 233

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW F      +   Y+V NADE +PG   DR ++  +PH ++EG ++A +AIGA 
Sbjct: 234 FLTGQKWEFTADAPGE-EKYIVCNADEGDPGAFMDRSVLEGDPHAVLEGMLVAGYAIGAR 292

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVR E+      L+ A+ +  A GLLG N    G+   + V  GAGA++CGEETAL
Sbjct: 293 EGYIYVRAEYPLAIRRLRTAIAQAEACGLLGENILASGFSFRVYVKAGAGAFVCGEETAL 352

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L S+EG +G PR++PP+PA  GL+  PT +NNVE++A +P ILRRGA WY+  G   ++G
Sbjct: 353 LTSIEGNRGMPRVRPPYPAVKGLWSKPTNINNVETLANIPHILRRGADWYAAMGVGRSKG 412

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           +K+F+++G VN    VE  M ++  E+I    GGI  G     AV  GG S  CLP   +
Sbjct: 413 SKVFALTGKVNNTGLVEVPMGLSLREIIFAIGGGI-QGGKAFKAVQIGGPSGGCLPES-L 470

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ L E G+ +G+  ++VMD ST ++        F + ESCG+C PCREGT  M
Sbjct: 471 LDTPVDYESLLEAGAMVGSGGLVVMDESTCMVDIARYFLNFTQQESCGKCAPCREGTKRM 530

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ R+ +G  +  +++ L +++  I+  ++C LG +A  P+   ++ FR   E  I  
Sbjct: 531 LEIVTRITEGEGRLEDLEALEKLAAVIKDTSLCGLGQSAPNPVLTTLRYFRDEYEAHI-H 589

Query: 419 YHRCN 423
             RC 
Sbjct: 590 DQRCP 594


>gi|296132262|ref|YP_003639509.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296030840|gb|ADG81608.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 619

 Score =  505 bits (1301), Expect = e-141,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 248/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +    N   +   S+ + ++ G ++ ++K+L    +  +I EVK SGLRGRGG 
Sbjct: 133 FYKKQVKTAIANCGIINPDSIEEYIAYGGYEALEKVLSSMSQTQVIEEVKKSGLRGRGGG 192

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   +   Y++ NADE +PG   DR ++  +PH ++EG  I  +AIGA
Sbjct: 193 GFPTGLKWEFAYKSPGE-KKYVICNADEGDPGAFMDRSVLEGDPHAVLEGMAICGYAIGA 251

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +   +GLLG N    G++  + +  GAGA++CGEETA
Sbjct: 252 DEGYIYVRAEYPLAIKRLENAIAQAEEAGLLGENILGSGFNFKLRIKAGAGAFVCGEETA 311

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR++PPFPA  GL+  PT  NNVE+ A +P I+R+GA W++G G E ++
Sbjct: 312 LINSIEGKRGMPRVRPPFPAQSGLWNKPTNNNNVETYANIPGIIRKGADWFAGMGTEKSK 371

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G+K+F+++G VN     E  + IT  E+I    GGI+       AV  GG S  C+P   
Sbjct: 372 GSKVFALTGKVNRTGLAEVPIGITIREIIFDIAGGIQNN-KKFKAVQIGGPSGGCIPEEY 430

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +G+ +G+  ++VMD +T ++        F + ESCG+CTPCREGT  
Sbjct: 431 L-DTPVDYDSLTALGAMMGSGGLVVMDETTCMVDVARFFLNFTQKESCGKCTPCREGTKR 489

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+  G  +  +ID L  +S  I+   +C LG +A  P+   ++ FR   E+ I 
Sbjct: 490 MLEILNRICDGKGKPEDIDTLERLSNVIKSTALCGLGQSAPNPVLATLRYFRNEYEDHI- 548

Query: 418 QYHRCN 423
              +C 
Sbjct: 549 HNKKCT 554


>gi|298528321|ref|ZP_07015725.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511973|gb|EFI35875.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 615

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 155/418 (37%), Positives = 240/418 (57%), Gaps = 6/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  +S+   ++R  +    + L E   + I+ E++ SGLRGRGGAGF   +KW
Sbjct: 139 VLRNKGIIDPESIDQYIARDGYFAAARALTEMAPEDILQEMQKSGLRGRGGAGFPVHLKW 198

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F  +  S    Y++ NADE +PG   DR I+   PH+++EG +IA+  I A   FIY R
Sbjct: 199 KFAYRETSG-VKYVLCNADEGDPGAFMDRSILEANPHSVLEGMLIAARTINADQGFIYCR 257

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    E +Q A+D     GLLGS+    G+  D+ ++ GAGA++CGEETAL+ S+EG 
Sbjct: 258 TEYPLALERVQIAIDRAREYGLLGSDILGSGFGFDLEIYQGAGAFVCGEETALMRSIEGG 317

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PPFPA  GL+  PT +NNVE++A VP I++ G  WY+G G  +++GTK+F++S
Sbjct: 318 RGMPRPRPPFPAQKGLWDRPTVLNNVETLANVPLIIQAGGDWYAGVGTRHSKGTKVFALS 377

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V     VE  M  +   +I    GGI G  +   AV  GG S  C+PA  +    +DY
Sbjct: 378 GDVRNIGLVEVPMGTSLRSIIYDIGGGIPGKRE-FKAVQLGGPSGGCVPAEYL-DLPVDY 435

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   G+ +G+  +IVMD+ T ++        F + ESCG+CTPCREGT  ++ +++R+
Sbjct: 436 EAISRAGAIMGSGGMIVMDQRTCMVDMARFFMDFVQEESCGKCTPCREGTMRILEILDRI 495

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             G    +++  L ++S  I   ++C LG  A  P+   +K F    E+ I +  +C 
Sbjct: 496 RAGEGVIQDLWELEDLSATIRDSSLCGLGQTAPNPVLSTLKYFPKEYEDHI-RNKKCP 552


>gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 623

 Score =  505 bits (1300), Expect = e-141,   Method: Composition-based stats.
 Identities = 154/425 (36%), Positives = 243/425 (57%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ + ++ G +  + K++       +I+EV  SGLRGRGGA
Sbjct: 136 FLNQQTRIVLENCGKIDAESIEEYIAVGGYQALAKVMGSMSPQEVIDEVTKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS + +   ++  Y+V N DE +PG   D  +M  +P+ +IEG  IA++A+GA
Sbjct: 196 GFPAGKKWSQVARQA-EKTRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++    GLLG N    G +  + ++ GAGA++CGE +A
Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEKYGLLGDNILNSGVNFHLHINRGAGAFVCGEGSA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+G PT +NNVE+ A VP I+ +GA W+   G E + 
Sbjct: 315 LTASIEGNRGMPRVKPPRTVEKGLWGKPTVLNNVETYANVPKIILQGADWFRTIGTEGSP 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FS++G +     +E  M  T   +I    GG++ G      V  GG S  CL   Q
Sbjct: 375 GTKTFSLTGSIENTGLIEVPMGTTLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLILDQ 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A +D+D +K++ + +G+  ++VMD +T +++       F + ESCG+C PCREGT  
Sbjct: 434 L-DAPLDFDSVKKLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  +  ++D L E++  ++   +C LG +A  P+   +K FR   EE I 
Sbjct: 493 MLEILERIVDGKGEMSDLDELEELANMVQNMALCGLGKSAPLPVISTLKRFRNEYEEHIR 552

Query: 418 QYHRC 422
              +C
Sbjct: 553 D-KKC 556


>gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
 gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
          Length = 596

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 163/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + ++++   +  + K+L       +I+EVK SGLRGRGG 
Sbjct: 110 FFRKQKRIALRNCGIINPEDIREAIAFDGYKALAKVLTQMTPKEVIDEVKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + L+ A+++    GLLG +    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ G++G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W+S  G E ++
Sbjct: 289 LLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E+I +  GGI        A   GG S  C+PA  
Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  ++VMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 L-DTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ V++++  G  ++ +I+ L E++K I+   +C LG  A  P+   I+ FR   E  I 
Sbjct: 467 MLEVLDKITSGKGEEGDIERLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIK 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-KRCP 531


>gi|160872482|ref|ZP_02062614.1| NADH oxidoreductase (quinone), f subunit [Rickettsiella grylli]
 gi|159121281|gb|EDP46619.1| NADH oxidoreductase (quinone), f subunit [Rickettsiella grylli]
          Length = 426

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 216/421 (51%), Positives = 277/421 (65%), Gaps = 7/421 (1%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTG 63
           D  F  L+  +  SL +    G ++  ++IL++    + II E+K S LRGRGGAGF TG
Sbjct: 4   DICFRTLHFDKPWSLENYRRVGGYEVWERILKEKTPPEQIIAELKRSCLRGRGGAGFPTG 63

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSF+ +       Y++ N+DE EPGTCKDRDI+R  PH LIEG  IA + +GA   + 
Sbjct: 64  LKWSFITRNAPG-QKYILCNSDEGEPGTCKDRDILRFNPHQLIEGMAIAGYVMGATVGYN 122

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE+    E  + A+ E Y +G LG N    G+D  +  H GAGAYICGEETAL+ESL
Sbjct: 123 YIRGEYDEPFERCETALAEAYEAGWLGENIIGSGFDFQLYNHRGAGAYICGEETALMESL 182

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGKKG PR KPPFPAN GLYGCPTT+NN E++A VP IL++G  W+   G+ NN G KLF
Sbjct: 183 EGKKGFPRFKPPFPANYGLYGCPTTINNTETLASVPVILQKGGQWFLELGKPNNGGCKLF 242

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S++GHVN P   E  + I F EL+    G        L AVIPGGSS+P L A  M    
Sbjct: 243 SVTGHVNKPGNYEVPLGIPFKELLALAGGMKAN--RKLKAVIPGGSSMPVLTAEAMWNTA 300

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MDYD + + GS LG+ AVIVMD +T ++K + R++ FYK ESCGQCTPCREGTGWM RV+
Sbjct: 301 MDYDSIIKAGSMLGSGAVIVMDETTCMVKVLTRIAHFYKEESCGQCTPCREGTGWMWRVL 360

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+ +G AQ+ ++DLL  V+  I G TICALGDAAA P+Q  IK+FR    E I ++ RC
Sbjct: 361 HRIEQGHAQRSDLDLLESVAGRIMGHTICALGDAAAMPVQSFIKHFRSEFIEHI-EHKRC 419

Query: 423 N 423
            
Sbjct: 420 P 420


>gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 596

 Score =  504 bits (1299), Expect = e-141,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + ++++   +  + K+L       +I+EVK SGLRGRGG 
Sbjct: 110 FFRKQKRIALRNCGIINPEDIREAIAFDGYKALAKVLTQMTPKEVIDEVKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + L+ A+++    GLLG +    G+D DI +  GAGA++CGEETA
Sbjct: 229 NHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ G++G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W+S  G E ++
Sbjct: 289 LLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E+I +  GGI        A   GG S  C+PA  
Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  ++VMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 L-DTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G  ++ +I+ L E++K I+   +C LG  A  P+   I+ FR   E  I 
Sbjct: 467 MLELLEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIK 526

Query: 418 QYHRCN 423
           +  +C 
Sbjct: 527 E-KKCP 531


>gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 597

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 165/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + +++ ++   +  ++K+L E   + +I+ +K SGLRGRGG 
Sbjct: 111 FFNRQMRIALRNCGRINPEDINEYIAFDGYKALEKVLTEMTPEAVIDTMKKSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKW F  K  ++   Y+  NADE +PG   DR ++  +PH++IE   IA FAIGA
Sbjct: 171 GFPTGMKWDFAAKQTAE-QKYVCCNADEGDPGAFMDRSVLEGDPHSVIEAMSIAGFAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + LQ A+D+    G+LG N    G+  ++ +  GAGA++CGEETA
Sbjct: 230 TQGYIYVRAEYPIAVKRLQMAIDQAVEYGILGDNVLGTGHKFNLEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A VP I+ +GA W+SG G E ++
Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTILNNVETYANVPVIILKGADWFSGIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E++    GGI  G     A   GG S  C+P   
Sbjct: 350 GTKVFALGGKINNTGLVEVPMGTTLREVVYDIGGGIPKG-KKFKAAQTGGPSGGCIPTEH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD    ++        F   ESCG+C PCR GT  
Sbjct: 409 L-DTPIDYDSLIALGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCPPCRIGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  +  +I+ L  ++KNI+   +C LG  A  PI   +K FR   E  + 
Sbjct: 468 MLEILERITEGKGEAGDIEKLELLAKNIKASALCGLGQTAPNPILSTLKYFRDEYEAHVF 527

Query: 418 QYHRCN 423
              +C 
Sbjct: 528 D-KKCP 532


>gi|325290779|ref|YP_004266960.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966180|gb|ADY56959.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Syntrophobotulus glycolicus DSM 8271]
          Length = 650

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 167/428 (39%), Positives = 247/428 (57%), Gaps = 7/428 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q+R I      +  + +S   +   +  ++K+L +   + +I EVK SGLRGRGGA
Sbjct: 164 FYAKQNRVILKKCGLIDPERVSQYFAHQGYRALEKVLQKMKPEEVIEEVKQSGLRGRGGA 223

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSF      D   YL+ NADE +PG   DR ++  +PH +IEG +I ++AIGA
Sbjct: 224 GFPTGLKWSFCRAAEGD-KKYLICNADEGDPGAFMDRSVLEGDPHAVIEGMLIGAYAIGA 282

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+    E L+ A+ +    GLLG N    G+   + +  GAGA++CGEETA
Sbjct: 283 AEGYIYCRAEYPLAVERLKTAIGQAEKYGLLGKNILNSGFHFKLRIKEGAGAFVCGEETA 342

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR++PP+PA  GL+G PT +NNVE+ A VP I+  GA WYS FG E ++
Sbjct: 343 LIASIEGQRGMPRVRPPYPAVKGLWGKPTNINNVETWANVPHIILNGAGWYSQFGTEKSK 402

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M IT  E+     GG   G     A   GG S  CLP   
Sbjct: 403 GTKIFAMTGKVNNTGLVEVPMGITLREI-IFDIGGGIKGGKKFKAAQIGGPSGGCLPES- 460

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +D+D L  +G+ +G+  + ++D +T ++        F ++ESCG+CTPCREGT  
Sbjct: 461 MLDIPVDFDSLGAVGAMVGSGGLTILDETTCMVDMARYFLNFTQNESCGKCTPCREGTKR 520

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+ KG  ++ +++ L  ++  I   ++C LG  A  P+   IK FRP  E  I 
Sbjct: 521 MLEILVRITKGEGKEGDLENLERLAGVIRKTSLCGLGQTAPNPVSATIKYFRPEYEAHIK 580

Query: 418 QYHRCNFQ 425
           +  RC   
Sbjct: 581 E-KRCPAH 587


>gi|256544554|ref|ZP_05471927.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC
           51170]
 gi|256399879|gb|EEU13483.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC
           51170]
          Length = 512

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 164/422 (38%), Positives = 244/422 (57%), Gaps = 7/422 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q +I   N   +  +S+ + ++RG +  + K L E  R  II  +  S LRGRGGAGF T
Sbjct: 29  QVKIALRNCGVIDPRSIDEYIARGGYFALHKALSEMDRKEIIEIISNSMLRGRGGAGFPT 88

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW        D   Y++ NADE +PG   DR I+ ++PH+++E   IA +AIG+   F
Sbjct: 89  GKKWQTAYDYDVD-KKYIICNADEGDPGAYMDRSILENDPHSVLEAMAIAGYAIGSDEGF 147

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+ +  ESL+ A+ +    G LG N    G++  I +  G+GA++CGE TAL+ES
Sbjct: 148 IYVRAEYPKAVESLKYAIKDAEEKGFLGKNIMDSGFNFTIELRLGSGAFVCGESTALMES 207

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G PR+K    A  GL+  PT +NNVE++A V  I+  GA WY   G E + GTK+
Sbjct: 208 IEGKRGMPRVKIHRTAFRGLWQKPTVINNVETLANVAQIIINGADWYRSIGTEKSPGTKV 267

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+ G V     +E  M  T  E+I    GGI G  + L AV  GG S  C+PA  +  +
Sbjct: 268 FSLVGDVKNSGLIEVPMGTTLREIIYDLGGGIEGDKE-LKAVQTGGPSGGCIPAKYL-DS 325

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ LKE+ S +G+  ++VMD +T ++        F   ESCG+C PCREGT  ++ +
Sbjct: 326 SVDYETLKELNSIMGSGGMVVMDENTCMVDIARFFLDFTCDESCGKCVPCREGTKRILEI 385

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +ER+V G  +  +ID L E+S+ +   ++C LG +AA+P+   +K ++    + I   H 
Sbjct: 386 LERIVAGKGKMEDIDRLEELSELVTEASLCGLGKSAAFPVISTLKYYKDEYIDHIKNKH- 444

Query: 422 CN 423
           C 
Sbjct: 445 CP 446


>gi|320161182|ref|YP_004174406.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
 gi|319995035|dbj|BAJ63806.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
          Length = 594

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 158/424 (37%), Positives = 246/424 (58%), Gaps = 7/424 (1%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
             + R+   N   +   ++ D ++   +  + K+L +   + +I+EV  SGLRGRGGAGF
Sbjct: 110 AKEVRVVLRNCGVIDPNNIEDYIAEDGYMALAKVLSDMTPEQVIDEVTRSGLRGRGGAGF 169

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG KW F     +D   Y+V NADE +PG   +R ++  +PH++IEG +IA++AIGA  
Sbjct: 170 LTGRKWQFCRNSQADM-KYIVCNADEGDPGAFMNRRVLESDPHSVIEGMIIAAYAIGARQ 228

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY R E+    ++L  A+ +    G LG N    G+  D+ V  GAGA++CGEETAL+
Sbjct: 229 GYIYCRAEYPLAVKTLNIAIKQAREFGFLGENILGTGFSFDLEVRQGAGAFVCGEETALM 288

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG++G+PR +PPFPA  GL+G PT +NNVE+ A VP I+ +GA W++  G E ++GT
Sbjct: 289 ASIEGRRGEPRPRPPFPAVSGLWGKPTNINNVETYANVPQIILKGADWFASMGTEKSKGT 348

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K F+++G V +   +E  + IT  E++    GGI+       A+  GG    CLPA  + 
Sbjct: 349 KTFALAGDVKHTGLIEVPLGITLREIVYDVGGGIKDD-KGFKAIQTGGPMGGCLPAEFL- 406

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ L + GS +G+  ++VMD  T ++        F + ESCG+CTPCR GT  ++
Sbjct: 407 DLPVDYESLTQAGSIMGSGGMVVMDEETCMVDIARFFMEFTQEESCGKCTPCRIGTRRLL 466

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ R+ +G  +  +I+ L E+   I   ++C LG  A  P+   +K FR   E  I + 
Sbjct: 467 EILTRICEGKGEDGDIERLEELCDQIRTASLCGLGQGAPNPVASTLKYFRHEYEAHIYE- 525

Query: 420 HRCN 423
            RC 
Sbjct: 526 KRCP 529


>gi|160936128|ref|ZP_02083501.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440938|gb|EDP18662.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
          Length = 574

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 159/426 (37%), Positives = 237/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +  G +  + K+L E   D +I  +  +GLRGRGGA
Sbjct: 88  FYKKQHRIALRNCGVINPENIEEYIGTGGYQALGKVLTEMTPDDVIQTLLDAGLRGRGGA 147

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    +  +D   Y+  NADE +PG   DR ++  +PH L+E   IA +AIG+
Sbjct: 148 GFPTGLKWKLCKQNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGS 206

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    E L+ A+ +     LLG N    G+D DI +  GAGA++CGEETA
Sbjct: 207 NQGYIYVRAEYPIAVERLKIAIQQAREMELLGKNIFGTGFDFDIDLRLGAGAFVCGEETA 266

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+PR +PPFPA  GL+G P+ +NNVE+ A +P I+  G  W++  G E ++
Sbjct: 267 LMTSIEGKRGEPRPRPPFPAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSK 326

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T   +IE+  GGI        A   GG S  C+PA  
Sbjct: 327 GTKVFALGGKINNTGLVEVPMGTTLRTVIEEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 385

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CT CR GT  
Sbjct: 386 -FDIPIDYDNLISIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTACRIGTKR 444

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ ++ KG A   ++D L E+   ++  ++C LG  A  P+   +  FR   E  I 
Sbjct: 445 MVEILTKITKGQAVMEDLDKLEELCHYVKANSLCGLGQTAPNPVLSTLHFFRDEYEAHIK 504

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 505 E-KRCP 509


>gi|71906593|ref|YP_284180.1| NADH-quinone oxidoreductase, F subunit [Dechloromonas aromatica
           RCB]
 gi|71846214|gb|AAZ45710.1| NADH dehydrogenase subunit F [Dechloromonas aromatica RCB]
          Length = 442

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 217/414 (52%), Positives = 280/414 (67%), Gaps = 7/414 (1%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           L G    SL D ++RG +  + +IL  +  ++ +I+EVK S LRGRGGAGF TG+KWSFM
Sbjct: 15  LDGDNSWSLKDYVARGGYAQLKRILDSKMTQEDVISEVKKSVLRGRGGAGFPTGLKWSFM 74

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
           P+       Y+V N DE EPGT KDRDIMR+ PH +IEG  IA++A+GA+  + YV GE 
Sbjct: 75  PRSFPG-DKYVVCNTDEGEPGTFKDRDIMRYNPHAVIEGMAIAAYAMGANRGYNYVHGEV 133

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
             E +  + A+D+  A+G +G N    G++ ++  HHG GAYICGEETALLES+EGKKGQ
Sbjct: 134 WLEYKRFEEALDQARAAGFIGQNILGSGFNFELFAHHGYGAYICGEETALLESIEGKKGQ 193

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR KPPFPA+ GLYG PTT+NN E+ A +P IL+ G   +   G+ NN GTKLFS+SGHV
Sbjct: 194 PRFKPPFPASFGLYGKPTTINNTETFASIPFILKMGGEEFLNLGKPNNGGTKLFSVSGHV 253

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
           N P   E  +   F  L+E  CGG+RGG   L AVIPGGSS P +PA  +    MDYD +
Sbjct: 254 NRPGNYEIPLGTPFATLLEM-CGGMRGGRK-LKAVIPGGSSAPVMPADVIMDCTMDYDSI 311

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            + GS LG+ AVIVMD +  ++KA+ RLS FY  ESCGQCTPCREGT WM +V+ R+  G
Sbjct: 312 SKGGSMLGSGAVIVMDETVCMVKALDRLSFFYHEESCGQCTPCREGTAWMYKVVHRIENG 371

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + +  ++DLL  V  NI GRTICALGDAAA+P+Q  IK+F    E  I ++  C
Sbjct: 372 LGKPEDLDLLNSVLGNIAGRTICALGDAAAFPVQSFIKHFGKEFEYHI-EHKTC 424


>gi|255994340|ref|ZP_05427475.1| protein HymB [Eubacterium saphenum ATCC 49989]
 gi|255993053|gb|EEU03142.1| protein HymB [Eubacterium saphenum ATCC 49989]
          Length = 593

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            +T Q RI   N   +  + + D +S G ++     L EK  + +I E+K SGLRGRGGA
Sbjct: 108 FITRQQRIVLRNCGLINPEKIEDYISEGGYEAARIALTEKTPEEVIEEIKKSGLRGRGGA 167

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW+      +D   Y+V NADE +PG   DR ++  +PH L+EG +I  +AIGA
Sbjct: 168 GFPTWFKWNAARSNEAD-QKYIVCNADEGDPGAFMDRSVLEGDPHALLEGMLIGGYAIGA 226

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IYVR E+    + L+ A+++   +  LG N    G+D D+ +  GAGA++CGEETA
Sbjct: 227 TKGVIYVRAEYPLAIKRLENAMEQARKANYLGDNILGSGFDFDLYIKAGAGAFVCGEETA 286

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PRLKPPFPA  G +  PT +NNVE++A V  I++ G   ++ FG   ++
Sbjct: 287 LIASIEGERGMPRLKPPFPAQKGFWKKPTNINNVETLANVAWIIKNGGDKFAEFGLGESK 346

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +      E  + +   ++I    GGI+       AV  GG S  C+PA  
Sbjct: 347 GTKVFALAGKIKKGGLCEVPLGMPLRDVIYNIGGGIKNDRK-FKAVQMGGPSGGCIPAE- 404

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + Y+ + + G+ +G+  +IVMD  T ++        F + ESCG+C  CR GT  
Sbjct: 405 LIDTKVTYEDIVKTGAIVGSGGMIVMDEDTCMVDMARYFLDFTRKESCGKCIYCRLGTKR 464

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  +  +I+LL E+S  ++  ++C LG  A  P+   IK FR   E+ I 
Sbjct: 465 MLEILERITQGKGKDGDIELLLELSNKVKEGSMCGLGQTAPNPVLTTIKYFRHEYEDHIY 524

Query: 418 QYHRCN 423
             H+C 
Sbjct: 525 N-HKCT 529


>gi|296132535|ref|YP_003639782.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296031113|gb|ADG81881.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 634

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 146/421 (34%), Positives = 234/421 (55%), Gaps = 5/421 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           +Q  +  +   +  + ++  ++R  +  + K L      ++ E+K + LRGRGGAGF TG
Sbjct: 137 EQKIVLADCGLINPEDINQYLARDGYSALAKALSMKPAEVVAEIKDAKLRGRGGAGFPTG 196

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW    +  S    Y++ NADE +PG   DR ++   PH +IEG +IA FA+GA   + 
Sbjct: 197 VKWEICHQAVSP-EKYVICNADEGDPGAFMDRALLESNPHQVIEGLMIAGFAVGASKGYF 255

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+      L+ A+++    G+LGS+     +  DI +  G+GA++CGEETAL+ S+
Sbjct: 256 YVRAEYPLAITRLRTALEQAREKGILGSSVLGSDFGFDIEIFQGSGAFVCGEETALIASM 315

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK G P  +PPFPA  GL G PT +NNV++++ VP I+R+G  W+   G  ++ GT +F
Sbjct: 316 EGKPGIPNHRPPFPAVSGLRGKPTVINNVKTLSYVPHIIRKGVDWFKSVGTPDSPGTAVF 375

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G V      E  M  T   LI     GI+       AV  GG S  CLP   +    
Sbjct: 376 ALAGKVVSTGLAEVPMGTTLRTLIYDVGNGIKDD-KPFKAVQIGGPSGGCLPESSL-DLP 433

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+D L++ G+ +G+  ++V+     +++       F + ESCG+CT CR GT  M+ ++
Sbjct: 434 IDFDSLQQAGAMMGSGGLVVLSEDDCMVEIARYFLEFTQKESCGKCTFCRLGTKQMLEIL 493

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             + KG  +  +IDLL E+ ++I+  ++C+LG  A  P+   I+ FR   E  I +  RC
Sbjct: 494 TDITKGQGKPEDIDLLLELGEDIKAGSLCSLGKTAPNPVLTTIRFFRHEYEAHIQE-KRC 552

Query: 423 N 423
            
Sbjct: 553 P 553


>gi|256072407|ref|XP_002572527.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238657687|emb|CAZ28759.1| NADH-ubiquinone oxidoreductase flavoprotein 1 (ndufv1), putative
           [Schistosoma mansoni]
          Length = 413

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 257/397 (64%), Positives = 313/397 (78%), Gaps = 1/397 (0%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           M RGHW    +I+ KG DWII E+K SGLRGRGGAGF +GMKWSFM K    RP YLV+N
Sbjct: 1   MQRGHWYKTKEIVLKGSDWIIEEIKKSGLRGRGGAGFPSGMKWSFMNKPSDGRPKYLVIN 60

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADE EPGTCKDR+IMRH+PHTLIEGC+IA  A+GA+ A+IY+RGEF  E  ++Q A+ E 
Sbjct: 61  ADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANAAYIYIRGEFYNEASNMQLAIKEA 120

Query: 144 YASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
           Y +G LG N+   G++ D+ +H GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA++GL+
Sbjct: 121 YEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADIGLF 180

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTKLF+ISGHVN PCTVEE MSI  
Sbjct: 181 GCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTKLFNISGHVNNPCTVEEEMSIPM 240

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            +LIE+H GG+ GGWDNLLAVIPGGSS P LP       +MD+D L +  SGLGTAA+IV
Sbjct: 241 RDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICSTVLMDFDALVQANSGLGTAALIV 300

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           M+RS D++  I RL  FY+HESCGQCTPCREG  W+ ++M R VKG A K EID+++E+S
Sbjct: 301 MNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWLSQIMTRFVKGNANKDEIDMIWEIS 360

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           K +EGRTICAL D AAWP+QGLI++FRP +E R  +Y
Sbjct: 361 KQMEGRTICALADGAAWPVQGLIRHFRPELEARFAKY 397


>gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 598

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  + K+L E     +++ +K SGLRGRGG 
Sbjct: 111 FFKRQMRIALRNCGIINPENIDEYIAYDGYKALAKVLTELKPTDVVDTLKKSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K       Y+  NADE +PG   DR ++  +PH++IE   IA +AIG+
Sbjct: 171 GFPTGLKWEFAAKQPEG-QKYVCCNADEGDPGAFMDRSVLEGDPHSVIEAMAIAGYAIGS 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + LQ A+++    GLLG N     +  D+ +  GAGA++CGEETA
Sbjct: 230 NQGYIYVRAEYPIAVKRLQIAIEQAKEYGLLGKNIFGTDFSFDLEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+ +GA W+S  G E ++
Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWEKPTILNNVETYANIPMIILKGAEWFSSIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E++    GGI        A   GG S  C+PA  
Sbjct: 350 GTKVFAVGGKINNTGLVEIPMGTTLREVLYDIGGGIP-NGKKFKAAQTGGPSGGCIPASH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L ++GS +G+  +IVMD    ++        F   ESCG+C PCR GT  
Sbjct: 409 I-DTPIDYDSLIQLGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCPPCRIGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  +  +I+ L  ++KNI+   +C LG  A  P+   +K F+      + 
Sbjct: 468 MLEILERITEGKGEIGDIEKLEILAKNIKASALCGLGQTAPNPVLSTLKYFKDEYMAHVI 527

Query: 418 QYHRCN 423
              +C 
Sbjct: 528 D-KKCP 532


>gi|225175951|ref|ZP_03729943.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168539|gb|EEG77341.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 608

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 158/422 (37%), Positives = 246/422 (58%), Gaps = 6/422 (1%)

Query: 4   DQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            Q+R    N   +  +++   +  G +  + K +    + +I EVK+SGLRGRGGAGF T
Sbjct: 108 RQERFLLHNCGNIDPENIESYLDAGGYKGLAKAVAMKPEEVIAEVKSSGLRGRGGAGFPT 167

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
             KW+F      +   Y++ NADE +PG   DR I+  +PH+++EG +IA +AIGA   +
Sbjct: 168 HQKWTFARDAKGE-QKYIICNADEGDPGAFMDRSILESDPHSVLEGMMIAGYAIGASVGY 226

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+R E+      L+ A+ +      LG+N    G+D DI +  GAGA++CGEETAL+ S
Sbjct: 227 IYIRAEYPLAIRRLKIAIAQAKEHYYLGTNILNSGFDFDIKIREGAGAFVCGEETALIAS 286

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G PR +PPFPA  GL+  PT++NNVE+ A VP IL +GA+ Y+  G E ++GTK+
Sbjct: 287 IEGKRGMPRFRPPFPAVSGLFASPTSINNVETFANVPQILAQGAAAYNVHGTEFSKGTKV 346

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G VN    +E  M ++ ++++    GGI        AV  GG S  C+PA  +   
Sbjct: 347 FALAGKVNRGGLIEVPMGMSINDIVFAVGGGI-STGKAFKAVQTGGPSGGCIPAE-LADT 404

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ LKE+G+ +G+  +++MD  T ++        F + ESCG+CT CR GT  M+R+
Sbjct: 405 AVDYESLKEIGAIMGSGGLLIMDEETCMVDVAKFFLTFTREESCGKCTFCRVGTEQMLRI 464

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +ER+ +G   + +ID L ++   I+  ++C LG     P+   IK FR   E  +     
Sbjct: 465 LERITEGEGTEEDIDTLEDLGSKIKAGSLCGLGQTVPNPVLTTIKYFRDEYEAHVRD-KV 523

Query: 422 CN 423
           C 
Sbjct: 524 CP 525


>gi|154249673|ref|YP_001410498.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154153609|gb|ABS60841.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 539

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 167/422 (39%), Positives = 253/422 (59%), Gaps = 5/422 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L +   +  N+  +  +++ + ++R  +  + K L+   + +I E+K SGLRGRGGAGF 
Sbjct: 104 LKETRIVTRNIGVIDPRNIDEYIARDGYFALSKALKMTPEEVIKEIKDSGLRGRGGAGFP 163

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW F  K  +D   Y+V NADE EPGT KDR IM  +PH++IE  +IA +A+GA   
Sbjct: 164 TGLKWEFTAKTKAD-QKYIVCNADEGEPGTFKDRLIMEGDPHSVIEAMIIAGYAVGATKG 222

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+    E+L+ A+ + Y  G LG +    G++ D+ V  GAGAY+CGEETALLE
Sbjct: 223 YIYIRGEYYNSVENLKKAIKDAYEYGFLGEDILGSGFNFDLTVRLGAGAYVCGEETALLE 282

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PRLKPP+P   GL+G PT +NNVE++A VP I+  GA W+   G  N+ GTK
Sbjct: 283 SIEGKSGRPRLKPPYPPQSGLFGKPTVINNVETLANVPQIILNGAQWFRSIGTPNSPGTK 342

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F + G VN    VE  M +T  E++    GG++GG + L  V  GG +   +   ++  
Sbjct: 343 VFCLVGDVNRRGMVELPMGVTVREVLYGFGGGVKGGRE-LKMVQTGGLAGTFIGPDKL-D 400

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DYD +K  G  LG+  ++ +D S  ++        F++HESCG+CTPCREGT     
Sbjct: 401 VPLDYDSMKNYGVSLGSGVILAIDDSHCVVDIALNTMEFFRHESCGKCTPCREGTRLACE 460

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-DQY 419
           ++E++ K  A   ++  L +++      + C LG +   P+  LI NF+    + I D+Y
Sbjct: 461 ILEKMTKFEATMDDLKYLEQIAILSADASFCGLGQSINVPLLSLINNFKEEFIQHIKDKY 520

Query: 420 HR 421
            +
Sbjct: 521 CK 522


>gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 147/425 (34%), Positives = 230/425 (54%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q +I   N   +  +++ D +    +  +DK L+   + ++  +K SGLRGRGGAG
Sbjct: 130 FYKKQKKIALRNCGIIDPENIDDYVLADGYTALDKALKMTPEEVVEIIKKSGLRGRGGAG 189

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW       +    Y+V NADE +PG   DR I+  +PH+++E   +  +AIGA 
Sbjct: 190 FPTGKKWEIALHNKAP-KKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAVCGYAIGAE 248

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
              +Y+R E+    + L  A+ +    G LG N     ++ DI + +GAGA++CGEETAL
Sbjct: 249 YGLVYIRAEYPNAMKILAKAIKDAKNHGFLGKNIYNTNFNFDIQLKYGAGAFVCGEETAL 308

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S++GK+G+P  KPPFPA  G    PT VNNVE++A +P I+++GA W+  FG EN+ G
Sbjct: 309 IRSMQGKRGEPVNKPPFPAERGYKNSPTNVNNVETLANIPVIIKKGAEWFRSFGTENSPG 368

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +N    +E  M  T  E+I +  GGI+       AV  GG S  CL    +
Sbjct: 369 TKVFALAGKINNTGLIEVPMGTTLREIIYEIGGGIK-NGKKFKAVQTGGPSGGCLTMDDL 427

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D+D L   GS +G+  +I+MD    +         F   ESCG+CTPCR G   +
Sbjct: 428 -DTPIDFDNLVAKGSMMGSGGMIIMDEDNCMPAVAKFYLDFTVDESCGKCTPCRIGNKRL 486

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +++R+  G   + ++D L E+S  I+   +C LG  A  P+   ++ F       +  
Sbjct: 487 LEILKRITDGEGTEDDLDTLKELSLIIKDSALCGLGQTAPNPVLSTLEKFWDEYVAHVRD 546

Query: 419 YHRCN 423
             +C 
Sbjct: 547 -KKCP 550


>gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 596

 Score =  502 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 163/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + ++++   +  + K+L       +I EVK SGLRGRGG 
Sbjct: 110 FFRKQKRIALRNCGIINPEDIREAIAFDGYRALAKVLTQMTPKEVIEEVKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      + P Y+V NADE +PG   DR I+  +PH++IE   IA +AIGA
Sbjct: 170 GFPTGVKWEFAY-NQKETPKYVVCNADEGDPGAFMDRSILEGDPHSVIEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + L+ A+++    GLLG +    G+D DI +  GAGA++CGEETA
Sbjct: 229 NYGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ G++G+PR +PPFPA  G++  PT +NNVE+ A +P I+  GA W+S  G E ++
Sbjct: 289 LLNSVMGRRGEPRPRPPFPAVKGVWSKPTIINNVETFANIPPIILNGAEWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E+I +  GGI        A   GG S  C+PA  
Sbjct: 349 GTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  ++VMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 L-DTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G  ++ +I+ L E++K I+   +C LG  A  P+   I+ FR   E  I 
Sbjct: 467 MLELLEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIK 526

Query: 418 QYHRCN 423
           +  +C 
Sbjct: 527 E-KKCP 531


>gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Halanaerobium praevalens DSM 2228]
          Length = 601

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++ G ++   K+L E     +++ VK SGLRGRGG 
Sbjct: 113 FYKKQQRIALANCGQIDPEAIDEYIALGGYEAAGKVLTEMDAQEVVDTVKDSGLRGRGGG 172

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      D   Y++ NADE +PG   DR I+  +PH +IEG +IA++ IGA
Sbjct: 173 GFPTGLKWQFAKNSDGD-KKYVICNADEGDPGAFMDRSILEGDPHRVIEGMLIAAYGIGA 231

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++Y R E+    + L+ A+ +    GLLG N     +D  + +  GAGA++CGEETA
Sbjct: 232 DEGYVYARAEYPLAIKRLEKAIKDAEEYGLLGKNIFSSNFDFKLHIKKGAGAFVCGEETA 291

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A +P I+  GA+ +S  G E + 
Sbjct: 292 LMNSIEGKRGMPIPRPPYPAKKGLWGKPTNINNVETYANIPFIINEGAAEFSKIGTEGSS 351

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I +  GG+        AV  GG S  CLP   
Sbjct: 352 GTKVFALTGKINNTGLVEVPMGTTLKEVIYEIGGGL-NKGKKFKAVQTGGPSGGCLPEDY 410

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD  + ++        F + ESCG+CTPCREGT  
Sbjct: 411 L-DLPIDYDSLLDAGTMMGSGGMVVMDEDSCMVDVARFFLNFTQSESCGKCTPCREGTKR 469

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+ +G  ++ +I+LL E+  +I+  ++C LG +A  P+   I+ FR   E  I 
Sbjct: 470 MLEILNRITEGEGKEGDIELLLELGDHIKSTSLCGLGQSAPNPVLSTIRYFRDEYEAHIK 529

Query: 418 QYHRCN 423
             + C 
Sbjct: 530 DQN-CP 534


>gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
 gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
          Length = 589

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 156/425 (36%), Positives = 244/425 (57%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
           +L +Q RI   N   +  + + D  +R  +  + K L+  R+ II E+K SGLRGRGGAG
Sbjct: 104 LLANQQRIVLRNCGIIDPECIEDYEAREGYQALKKALKMERNAIIEEIKKSGLRGRGGAG 163

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW       S    Y++ NADE +PG   DR  +  +PH++IEG +I ++AIGA+
Sbjct: 164 FPTGLKWQLCAFENS-SKKYVICNADEGDPGAFMDRSTLEGDPHSVIEGMIIGAYAIGAN 222

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+    E L+ A+      G LG N     +   + +  GAGA++CGEETAL
Sbjct: 223 EGYIYCRAEYPMALEHLKTAISAAEKKGYLGKNILGSSFSFALHIKEGAGAFVCGEETAL 282

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           ++S+EGK+G P L+PP+PA  GL+G PT +NNVE+ A +P I+  GA  +  +G E + G
Sbjct: 283 MQSIEGKRGMPTLRPPYPAVKGLWGKPTNINNVETWANIPWIIMHGAQEFRKYGTEKSPG 342

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +     +E  M I   ++I K  GG++       AV  GG S  C+PA ++
Sbjct: 343 TKVFALAGKIAGSGLIEVPMGIPLKDIIYKVGGGMKTANP-FKAVQMGGPSGGCIPAEKL 401

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              I+DYD +   G+ +G+  ++VMD  T ++        F ++ESCG+CT CR GT  M
Sbjct: 402 E-TIVDYDSITATGAIMGSGGMVVMDSGTCMVDVARFFLNFTQNESCGKCTFCRIGTKRM 460

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ R+ +G  + +++D L E+++N+   ++C LG  A  P+   +  FR      I  
Sbjct: 461 LEILTRITEGKGELQDLDNLEELAENVIKGSLCGLGQTAPDPVLTTLHYFRDEYLAHIVD 520

Query: 419 YHRCN 423
            H C 
Sbjct: 521 KH-CP 524


>gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Clostridium thermocellum ATCC 27405]
 gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 597

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 156/425 (36%), Positives = 241/425 (56%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  + K+L E   + +++ +K SGLRGRGG 
Sbjct: 110 FFAKQQRIALRNCGVINPENIDEYIAFDGYKALAKVLTEMTPEQVVDVIKRSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  +D   Y+  NADE +PG   DR ++  +PH++IE   IA +AIGA
Sbjct: 170 GFPTGLKWEFAMKQDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHSVIEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++YVR E+    + L  A+ +    GLLG N     +  D+ +  GAGA++CGEETA
Sbjct: 229 NQGYVYVRAEYPIAVKRLGIAIQQAREYGLLGKNIFGTDFSFDVDIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+ +G  W++  G E ++
Sbjct: 289 LMTSIEGHRGEPRPRPPFPAVKGLWQKPTLLNNVETYANIPQIILKGPEWFASIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E+I    GGI        A   GG S  C+PA  
Sbjct: 349 GTKVFAVGGKINNTGLVEIPMGTTLREVIYDIGGGIP-NGKKFKAAQTGGPSGGCIPASH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L ++GS +G+  +I+MD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 I-DTPIDYDSLTQLGSMMGSGGLIIMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ER+ +G  ++ +I+ L  ++KNI+   +C LG  A  PI   ++ FR    E + 
Sbjct: 467 MYEILERITEGKGEEGDIEKLEMLAKNIKASALCGLGQTAPNPILSTLRYFRHEYIEHVR 526

Query: 418 QYHRC 422
              +C
Sbjct: 527 D-KKC 530


>gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
 gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
          Length = 599

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 163/427 (38%), Positives = 246/427 (57%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + ++   +  ++K+L +     +I+EVKASGLRGRGG 
Sbjct: 111 FYKKQKRIALANCGVIDPEDIEEYIAFDGYMALEKVLFKMTPQEVIDEVKASGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TG+KW F     S D   ++  NADE +PG   DR ++  +PH LIE   IA++AIG
Sbjct: 171 GFPTGLKWQFAYNADSPDGVKFVACNADEGDPGAFMDRSVLEGDPHRLIEAMAIAAYAIG 230

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176
           A   ++YVR E+    + LQ A+D+    GLLG N     +  D+ +  GAGA++CGEET
Sbjct: 231 AQKGYVYVRAEYPIAVKRLQIAIDQAKDYGLLGDNVFDTDFSFDLEIRLGAGAFVCGEET 290

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EGK+G+PR +PPFPAN GL+  PT +NNVE+ A +PTI+  GA  ++  G E +
Sbjct: 291 ALMNSVEGKRGEPRPRPPFPANKGLFERPTVLNNVETYANIPTIILEGAESFASVGTEKS 350

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F++ G +N    +E  M  T  E+I +  GGI        A   GG S  C+P+ 
Sbjct: 351 KGTKVFALGGKINNTGLLEIPMGTTLREVIYEIGGGIP-NGKAFKAAQTGGPSGGCIPSS 409

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           ++    +DYD L  +G+ +G+  +IVMD    ++        F + ESCG+C PCR GT 
Sbjct: 410 EL-DIPIDYDNLISIGAMMGSGGLIVMDEDNCMVDVARFFLDFTQDESCGKCPPCRIGTK 468

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ER+  G  ++ +I+ L E+++ I+   +C LG  A  P+   IK FR   E  I
Sbjct: 469 RMLEILERICDGQGEEGDIERLEELAEGIKASALCGLGQTAPNPVLSTIKYFRDEYEAHI 528

Query: 417 DQYHRCN 423
            +  RC 
Sbjct: 529 YE-KRCP 534


>gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 573

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 242/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q RI  +N   +  + + + ++R  +  + K L E   + +++EVK SGLRGRGGA
Sbjct: 87  FYSKQHRIVLSNCGYIDPEKIEEYIARDGYIALGKALLEMTPEEVLDEVKKSGLRGRGGA 146

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K       Y++ NADE +PG   DR  +  +PH++IEG  + ++AIGA
Sbjct: 147 GFPTGLKWEFARKAP-GNKKYVICNADEGDPGAFMDRSTLEGDPHSVIEGMALGAYAIGA 205

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+    + L+ A+ +    GLLG N     +   + +  GAGA++CGEETA
Sbjct: 206 DEGYIYCRAEYPLAIKRLKIAIAQAEEMGLLGDNIMGTNFSFHLHLKEGAGAFVCGEETA 265

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A VP I+  GA W++  G E ++
Sbjct: 266 LMASIEGRRGMPRPRPPFPAQHGLWGKPTNINNVETWANVPKIILNGADWFASMGTEKSK 325

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M IT  E+I +  GGI        AV  GG S  CL    
Sbjct: 326 GTKIFALTGKITNTGLIEVPMGITIKEIIYELGGGI-LNGKEFKAVQIGGPSGGCLTKEH 384

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L   G+ +G+  ++VMD  T ++        F + ESCG+C PCREGT  
Sbjct: 385 L-DLPIDYESLTGAGAIMGSGGLVVMDEDTCMVDVARFFLEFTQRESCGKCVPCREGTKQ 443

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++ KG     ++  L E++  ++  ++C LG  A  P+   I+ FR      I+
Sbjct: 444 MLLMLEKICKGEGTLEDLSKLEELAYMVKETSLCGLGQTAPNPVITTIRYFRDEYLAHIE 503

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 504 E-KRCP 508


>gi|289207898|ref|YP_003459964.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp.
           K90mix]
 gi|288943529|gb|ADC71228.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp.
           K90mix]
          Length = 426

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 215/419 (51%), Positives = 273/419 (65%), Gaps = 8/419 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           F   Y     SL    S G +  ++K+ +     + +I EVK S LRGRGGAGF TG+KW
Sbjct: 7   FATRYLDDPASLETYKSVGGYQALEKVYKGKMAPEDVIEEVKTSNLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DESEPGTCKDR+I+ + PH LIEG  IA +AIGA   + Y+R
Sbjct: 67  SFMPRNTPG-QKYIVCNSDESEPGTCKDREILMYNPHALIEGMAIAGYAIGATVGYNYMR 125

Query: 127 GEFIRERE-SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           GEF+ E      AA+ E Y +G LG +    G D D+    GAGAYICGEETALLESLEG
Sbjct: 126 GEFMDEVNTRFTAALKEAYDAGYLGKDIFGSGVDFDLYPSLGAGAYICGEETALLESLEG 185

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPAN GLYG PTT+NN ES+A +P I+R G  W++  G   + G KLFS+
Sbjct: 186 KKGQPRFKPPFPANYGLYGKPTTINNTESLASIPAIIRNGGQWFADLGVPKSGGEKLFSV 245

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHVN P   E  +   F +L+E   G        L AVIPGGSSVP +P   M  A MD
Sbjct: 246 SGHVNKPGNYEIPLGTPFKDLLEMSGG--VLNGRKLKAVIPGGSSVPVVPGDVMLKANMD 303

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D + + GS LG+ AVIVMD + D++KA+ R+S FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 304 FDSIAQAGSMLGSGAVIVMDETADMVKALQRISRFYFSESCGQCTPCREGTGWLYRMLTR 363

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           +V+G  +  +++ L +V+  IEG TICALGDAAA P++  IK+FR   E  I Q+ R  
Sbjct: 364 IVEGQGRPEDLERLDDVASKIEGHTICALGDAAAMPVRSFIKHFRHEFEYYI-QHGRSP 421


>gi|190895762|gb|ACE96394.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895772|gb|ACE96399.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 396

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 272/396 (68%), Positives = 316/396 (79%), Gaps = 1/396 (0%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           N+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP
Sbjct: 1   NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A+IY+RGE++
Sbjct: 61  KASDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
            ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLESLEGK+G+P
Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTKLF +SGHVN
Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP       +MDYD LK
Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  +MERL  G 
Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396


>gi|328950036|ref|YP_004367371.1| NADH-quinone oxidoreductase, F subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450360|gb|AEB11261.1| NADH-quinone oxidoreductase, F subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 442

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 197/421 (46%), Positives = 264/421 (62%), Gaps = 12/421 (2%)

Query: 6   DRIFTNLYGL----QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60
            R    LY         +L   ++ G ++   K L     D +I EVK SGLRGRGGAGF
Sbjct: 14  PRFVRTLYAHVGRPNSWTLEYYLAHGGYEAARKALTRMTPDEVIEEVKKSGLRGRGGAGF 73

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK      HY+V NADESEPG+ KDR ++  +PH LIEG +IA +AI A  
Sbjct: 74  PTGVKWSFMPKEPK-TQHYIVCNADESEPGSFKDRYLLEDDPHQLIEGMIIAGYAIRATK 132

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVRGE+ R  + L AA+ E YA G LG N    G+  D+ VH GAGAYICGEETAL+
Sbjct: 133 GYVYVRGEYRRAYDRLTAAIREAYAKGYLGENLFGSGFSFDLYVHRGAGAYICGEETALM 192

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG +  PR+KPPFPA  GLYG PTT+NNVE++  V  I+ RGA W+   G E ++G 
Sbjct: 193 NSLEGLRANPRMKPPFPAQSGLYGKPTTINNVETLCSVVHIIERGADWFGQMGTERSKGH 252

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQM 298
           KLF ISG V  P   E  +  TF ELI    GG     + + A+IPGGSS P +P   ++
Sbjct: 253 KLFQISGPVRRPGVYELPLGTTFRELIYDWAGGPT---EPIKAIIPGGSSTPPVPWTDEV 309

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GW 357
             + MDY+  + +G+ LGT  VI++  S  I+ A+W ++ FY HESCG+CTPCREG  GW
Sbjct: 310 LDSPMDYEHCQRLGTLLGTGGVILIPESVCIVNAMWNVTRFYAHESCGKCTPCREGVSGW 369

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + ++ E++ +G  +  +++LL  +  NIEG+  C L DAA WP++G +K+FR   E  I+
Sbjct: 370 LPKLFEKIERGRGEPGDVELLENLLDNIEGKAFCPLADAAVWPVRGSLKHFRHEYEHHIE 429

Query: 418 Q 418
            
Sbjct: 430 H 430


>gi|190895764|gb|ACE96395.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895766|gb|ACE96396.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895768|gb|ACE96397.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895770|gb|ACE96398.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 396

 Score =  502 bits (1292), Expect = e-140,   Method: Composition-based stats.
 Identities = 272/396 (68%), Positives = 316/396 (79%), Gaps = 1/396 (0%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           N+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP
Sbjct: 1   NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K    RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A+IY+RGE++
Sbjct: 61  KTSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
            ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLESLEGK+G+P
Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTKLF +SGHVN
Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP       +MDYD LK
Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  +MERL  G 
Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396


>gi|302388830|ref|YP_003824651.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199458|gb|ADL07028.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 583

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 161/422 (38%), Positives = 251/422 (59%), Gaps = 7/422 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +  +S+ + + +G +  ++K+L E   + +I E+K SGLRGRGGAGF T
Sbjct: 101 QVRIALRNCGAIDPESIEEYIEKGGYKALEKVLKEMTPEQVIEEMKVSGLRGRGGAGFPT 160

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
             KW+   +     P Y+V NADE +PG   DR ++  +PH+++EG  IA +AIGA   +
Sbjct: 161 WFKWNAT-RSAQGSPKYVVCNADEGDPGAFMDRSVLEGDPHSVLEGMAIAGYAIGAEHGY 219

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IYVR E+    + L+ A+++    G LGSN    G+  D+ +  GAGA++CGEETAL+ S
Sbjct: 220 IYVRAEYPLAIKRLEIAIEQAREKGFLGSNIFGTGFSFDVKIKAGAGAFVCGEETALIAS 279

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEG++G PRLKPPFPA  G  G PT +NNVE+ A VP I+  G   ++  G E ++GTK+
Sbjct: 280 LEGERGMPRLKPPFPAQKGYMGKPTNINNVETFANVPWIILNGGKAFAAIGTEKSKGTKV 339

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G V     VE  M I   ++I +  GGI+     + AV  GG S  C+P   +   
Sbjct: 340 FALAGKVKKGGLVEVPMGIPLRDVIFRIGGGIKNDRK-IKAVQLGGPSGGCVPES-LLDT 397

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ + + G+ +G+  +IVMD +T ++        F + ESCG+CT CR GT  M+ +
Sbjct: 398 PVDYESIVKTGAIMGSGGMIVMDETTCMVDMARFFLDFTRKESCGKCTHCRLGTKRMLEI 457

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +ER+ +G  ++ +++LL E++ N++G ++C LG  A  P+   ++ FR   E  I    +
Sbjct: 458 LERICEGRGEESDLELLEELAVNVKGGSLCGLGQTAPNPVLTTLRYFRDEYEAHIKD-KK 516

Query: 422 CN 423
           C 
Sbjct: 517 CP 518


>gi|312371261|gb|EFR19494.1| hypothetical protein AND_22330 [Anopheles darlingi]
          Length = 1009

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 258/401 (64%), Positives = 305/401 (76%), Gaps = 10/401 (2%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG     L  ++ RG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 61  LADQDRIFTNLYGRHDWRLKGALKRGDWYKTKEILLKGTDWILNEIKVSGLRGRGGAGFP 120

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 121 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGKAMGARAA 180

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+E
Sbjct: 181 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGSGYDFDVFMHRGAGAYICGEETALIE 240

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPA+VG++GCPTTV+NVE++AV PTI RRG  W++GFGR  N GTK
Sbjct: 241 SLEGKQGKPRLKPPFPADVGVFGCPTTVSNVETVAVAPTICRRGGVWFAGFGRTRNSGTK 300

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   ELIE+H GGIRGGWDNLL +IPGGSS P +P      
Sbjct: 301 LFNISGHVNTPCTVEEEMSIPLKELIERHAGGIRGGWDNLLGIIPGGSSTPVIPKSVCED 360

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+DGL +  + LGTAA+IVMD+STDIIKAI RL +FYKHESCGQCTPCREG  WM +
Sbjct: 361 VLMDFDGLVQAQTSLGTAAIIVMDKSTDIIKAISRLIMFYKHESCGQCTPCREGIAWMNK 420

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGR---------TICA 392
           +M R V G A+  EID+L+E+SK IE           TIC 
Sbjct: 421 IMHRFVAGNARPSEIDMLWEISKQIEVAASHHIEEELTICG 461


>gi|296136701|ref|YP_003643943.1| hypothetical protein Tint_2263 [Thiomonas intermedia K12]
 gi|295796823|gb|ADG31613.1| hypothetical protein Tint_2263 [Thiomonas intermedia K12]
          Length = 442

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/421 (50%), Positives = 268/421 (63%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
           Q +I   L G    +L   + R  +  + KIL +G   + +I EVKAS LRGRGGAGF T
Sbjct: 21  QPQILAGLNG-DNWALEGYLQRDGYQALRKILTEGWTPEQVIAEVKASALRGRGGAGFPT 79

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N+DE EPGT KDRDI+R  PH +IEG  IA+FA+G    +
Sbjct: 80  GLKWSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHAVIEGMTIAAFAMGITVGY 138

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   + +  + A+ +   +G LG N     +   +   HG GAYICGEETALLES
Sbjct: 139 NYIHGEIFEDYDRFEEALRQARDAGYLGDNILGSNFSFQLHAAHGFGAYICGEETALLES 198

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+
Sbjct: 199 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRHGGQAYLEVGKPNNGGTKI 258

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           +S+SG V  P   E  M   F +L+E   G        L AVIPGGSS P LPA  M   
Sbjct: 259 YSVSGDVAKPGNYEVPMGTPFAKLLELAGGM--REGRELKAVIPGGSSAPVLPASIMMDC 316

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIV++ +  ++K++ RLS FY+HESCGQCTPCREGTGW+ RV
Sbjct: 317 TMDYDSIAKAGSMLGSGAVIVLNDTRCMVKSLMRLSYFYQHESCGQCTPCREGTGWLWRV 376

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+  G  +  ++DLL  VS NI GRTICALGDAAA P++  +K+FRP  E  I  +  
Sbjct: 377 VHRIENGQGRMEDLDLLNSVSDNIAGRTICALGDAAAMPVKSFVKHFRPEFEHHIT-HKT 435

Query: 422 C 422
           C
Sbjct: 436 C 436


>gi|323702552|ref|ZP_08114215.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532526|gb|EGB22402.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 649

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + ++D ++ G + ++ ++L+    + +I EV+ SGLRGRGGA
Sbjct: 163 FYAKQTRLLLANCGYIDPEQIADYVAVGGYRSLVQVLQHMAPEQVIEEVQQSGLRGRGGA 222

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW+   +   D   Y++ NADE +PG   DR ++  +PH ++EG +IA +A+G+
Sbjct: 223 GFPTGKKWAAARRAAGDI-KYIICNADEGDPGAFMDRSVLEGDPHAVLEGMLIAGYAVGS 281

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+    + L+ A+++    GLLG N    G+D DII+  GAGA++CGE TA
Sbjct: 282 TVGYIYCRAEYPLAIKRLKIAIEQARRWGLLGRNILNSGFDFDIILKEGAGAFVCGEGTA 341

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG++G PR+KPP     GL+  PT +NNVE++A +P I+R GA  +   G  N+ 
Sbjct: 342 LQASIEGQRGMPRVKPPRSTEKGLWQKPTVLNNVETLANIPLIIRIGAERFRQIGTANSP 401

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++SG V  P  VE  M +T  E+I    GGIR       AV  GG S  CL   Q
Sbjct: 402 GTKIFALSGAVANPGLVEVPMGVTLREVIFGIGGGIR-DGKKFKAVQLGGPSGGCLT-EQ 459

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +D+D L   G+ +G+  ++VMD +T ++        F + ESCG+CTPCREGT  
Sbjct: 460 HLDLPVDFDSLTSAGATVGSGGMVVMDENTCMVDVARFFLAFTQAESCGKCTPCREGTKR 519

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G A   ++  L  + + ++  ++C LG A   P+   +K FR      I 
Sbjct: 520 MLEILERMCQGRAGMDDLADLERLCRVVKTTSLCGLGQACPNPVLSTLKYFRNEYLAHIV 579

Query: 418 QYHRCN 423
             H C 
Sbjct: 580 DKH-CP 584


>gi|308271888|emb|CBX28496.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
           Desulfobacterium sp.]
          Length = 541

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 155/427 (36%), Positives = 237/427 (55%), Gaps = 8/427 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  +++ D ++ G ++ + K+L    R+ +I+EVK SGLRG GGA
Sbjct: 110 FYNKQQRTLLKNCGHIDPENIDDYIAAGGYEALKKVLSGMTREQVIDEVKRSGLRGLGGA 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW    K   D   Y++ NADE +PG  +DR ++   PH+L+EG VIA +AIGA
Sbjct: 170 GFPAGRKWEACYKAEGD-VKYVICNADEGDPGAFQDRSVIEGTPHSLLEGMVIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +   +  LG       +  +I V  GAGA++CGE TA
Sbjct: 229 KVGYIYVRAEYPLAVKRLRTAISKAKKNKYLGKKILGTDFTFNIEVFQGAGAFVCGESTA 288

Query: 178 LLESLEGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           L+ S+EGK+G P+  P P    VGL+  PT +NNV+++A +P I+  GA W++G G E +
Sbjct: 289 LVLSIEGKRGMPKASPRPRTTEVGLWDKPTLLNNVKTLAYIPQIIANGADWFAGIGTEKS 348

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GT + +++G V     +E  M IT  E+     GG         AV  GG S  CLP  
Sbjct: 349 KGTVILALTGKVVNNGLIEVPMGITLREI-IFGIGGGIPDGKKFKAVQTGGPSGGCLP-E 406

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D+D L + GS +G+  ++VMD  T ++        F + ESCGQC PCR GT 
Sbjct: 407 HLLDLPVDFDSLNDAGSIMGSGGIVVMDEETCMVDVARYFLDFTQRESCGQCIPCRLGTK 466

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M  +++ + KG  Q  +ID+L E+ + +   ++CALG  A  P+   ++ FR   E  I
Sbjct: 467 QMFDILDDITKGKGQPEDIDMLLEIGEAVAKTSLCALGKTAPNPVLTTLRFFRHEYEAHI 526

Query: 417 DQYHRCN 423
           ++  RC 
Sbjct: 527 NE-KRCP 532


>gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 613

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 250/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
              +Q +I  TN   +  + + + ++ G +  + + L     + +I+EVK SGLRGRGG 
Sbjct: 128 FYNEQQQIALTNCGQINPEDIEEYLAVGGYQALGEALTGMKPEEVIDEVKESGLRGRGGG 187

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  +   D   Y++ NADE +PG   DR I+  +PH ++EG +IA +A+G+
Sbjct: 188 GFPTGLKWQFAQESEGD-KKYIICNADEGDPGAFMDRSILEGDPHKVLEGMIIAGYAVGS 246

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    GLLG N     +  DI +  GAGA++CGEETA
Sbjct: 247 DEGYIYVRAEYPLAVKRLREAISQAREYGLLGENLFGTEFSFDINIKEGAGAFVCGEETA 306

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G P+ +PP+PA  GL+G PT +NNVE+ A + TI+  GA  +S  G E ++
Sbjct: 307 LIASIEGRRGMPQSRPPYPAQEGLWGKPTNINNVETYANISTIITEGAESFSSVGTEESK 366

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M IT +E+I    GGI G  D   AV  GG S  CLP  +
Sbjct: 367 GTKVFALAGKINNTGLVEVPMGITVEEIIYDIGGGIPGDKD-FKAVQIGGPSGGCLPEEK 425

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L E G+ +G+  ++VMD  T ++        F   ESCG+C PC EGT  
Sbjct: 426 LH-LPIDYDSLLEAGAMMGSGGLVVMDEDTCMVDVARYFLDFTVSESCGKCAPCSEGTKR 484

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+  G  ++ +++ L ++++ I+  ++C LG  A  P+   +K FR   +  + 
Sbjct: 485 MLDILERITDGNGKQEDLEQLEKLAEVIKDTSLCGLGQTAPNPVLSTLKYFRDEYKAHVK 544

Query: 418 QYHRCN 423
             ++C 
Sbjct: 545 D-NKCP 549


>gi|294340856|emb|CAZ89251.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           (NDH-1, chain F) [Thiomonas sp. 3As]
          Length = 442

 Score =  501 bits (1291), Expect = e-140,   Method: Composition-based stats.
 Identities = 211/421 (50%), Positives = 268/421 (63%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
           Q +I   L G     L   ++R  +  + KIL +G   + +I EVKAS LRGRGGAGF T
Sbjct: 21  QPQILAGLNGEN-WDLQGYLARDGYQALRKILTEGWTPEQVIAEVKASALRGRGGAGFPT 79

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N+DE EPGT KDRDI+R  PH +IEG  IA+FA+G    +
Sbjct: 80  GLKWSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHAVIEGMTIAAFAMGITVGY 138

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   + +  + A+ +   +G LG N     +   +   HG GAYICGEETALLES
Sbjct: 139 NYIHGEIFEDYDRFEEALRQARDAGYLGDNILGSNFSFQLHAAHGFGAYICGEETALLES 198

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+
Sbjct: 199 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKI 258

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           +S+SG V  P   E  M   F +L+E   G        L AVIPGGSS P LPA  M   
Sbjct: 259 YSVSGDVAKPGNYEVPMGTPFAKLLELAGGM--REGRELKAVIPGGSSAPVLPASIMMDC 316

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIV++ +  ++K++ RLS FY+HESCGQCTPCREGTGW+ RV
Sbjct: 317 TMDYDSIAKAGSMLGSGAVIVLNDTRCMVKSLMRLSYFYQHESCGQCTPCREGTGWLYRV 376

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+  G  +  ++DLL  VS NI GRTICALGDAAA P++  +K+FRP  E  I  +  
Sbjct: 377 VHRIENGQGRMEDLDLLNSVSDNIAGRTICALGDAAAMPVKSFVKHFRPEFEHHIT-HKT 435

Query: 422 C 422
           C
Sbjct: 436 C 436


>gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
 gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
          Length = 597

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 153/427 (35%), Positives = 234/427 (54%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + + R  ++ + K+L+    D +I  +  SGLRGRGG 
Sbjct: 109 FYKKQHRIALRNCGVINPECIDEYIGRNGYEALGKVLKTMTPDDVIQVILDSGLRGRGGG 168

Query: 59  GFSTGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TG KW     +  D    Y+  NADE +PG   DR ++  +PH +IE   IA +AIG
Sbjct: 169 GFPTGKKWQLARNLVKDADQKYVCCNADEGDPGAFMDRSVLEGDPHVVIEAMAIAGYAIG 228

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IY+R E+    + LQ A+D+    GLLG N    G+D D+ +  GAGA++CGEET
Sbjct: 229 ATQGYIYIRAEYPIAVQRLQIAIDQAREYGLLGKNIFDSGFDFDLDIRLGAGAFVCGEET 288

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+  GA W++  G E +
Sbjct: 289 ALMTSIEGNRGEPRPRPPFPAESGLFKKPTVLNNVETYANIPQIILNGADWFASMGTEKS 348

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F++ G ++    VE  M  T  E+I +  GGI        A   GG S  C+PA 
Sbjct: 349 KGTKVFALGGKIHNTGLVEVPMGTTLREVIYEIGGGIP-NGKAFKAAQTGGPSGGCIPAE 407

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR GT 
Sbjct: 408 HL-DIPIDYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLQFTVDESCGKCTPCRIGTK 466

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +  ++E++  G A   ++D + ++   I+  ++C LG  A  P+   ++ F+      +
Sbjct: 467 RLYEMLEKITSGNATMEDLDKMEKLCYYIKNNSLCGLGQTAPNPVLSTLRYFKDEYIAHV 526

Query: 417 DQYHRCN 423
               +C 
Sbjct: 527 KD-KKCP 532


>gi|320161184|ref|YP_004174408.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1]
 gi|319995037|dbj|BAJ63808.1| NADH dehydrogenase [Anaerolinea thermophila UNI-1]
          Length = 548

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 167/423 (39%), Positives = 252/423 (59%), Gaps = 6/423 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61
            +Q  +      +   ++ D +    +  + K+L     + +I EV+ SGL+GRGGAGF 
Sbjct: 115 AEQRIVLERAGVIDPANIEDYILHDGYAALGKVLTSMKPEEVIAEVQKSGLKGRGGAGFP 174

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+ K       Y++ NADESEPGT KDR I+  +PH ++E   IA +A+GA   
Sbjct: 175 TGLKWSFVAKAP-GTKKYVICNADESEPGTFKDRVILEGDPHAILEAMAIAGYAVGADEG 233

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVRGE+   +E L  A+ +    G LG N     ++ +I VH GAGAYICGEETAL+E
Sbjct: 234 YIYVRGEYALAQERLAIAIAQAKEYGFLGKNIFGTEFNFEIHVHSGAGAYICGEETALIE 293

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PR +PP+P   GL+G PT VNNVE++A +P ILR GA WY  FG  ++ GTK
Sbjct: 294 SIEGKRGEPRARPPYPTTHGLWGKPTLVNNVETLANIPPILRNGAEWYRKFGTPSSPGTK 353

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +++I G+VN    +E  M IT  E+I  +  G++           GGSS   +PA  ++ 
Sbjct: 354 VYTILGNVNNTGLIEVPMGITLREVIAIYGRGMK-NGRTFKLAQTGGSSGSVIPAS-LQD 411

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD++   + G  LG+ A+++ D  T ++     L  F++ ESCG+CTPCR GT    +
Sbjct: 412 TPMDFESYNKAGVSLGSGALLICDEDTCVVDLAKVLMNFFRRESCGKCTPCRIGTYRAYQ 471

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R+ +G    +++D L  +S+N+   + C LG  AA PI+ ++K FR  +E  I +  
Sbjct: 472 ILQRISEGQGVLKDLDELLSLSENLVNLSNCGLGQTAATPIKDILKYFRAEVEAHI-RLG 530

Query: 421 RCN 423
            C 
Sbjct: 531 VCP 533


>gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 169/423 (39%), Positives = 252/423 (59%), Gaps = 6/423 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61
             Q  + +N   +  +S+ + ++   +  V + L       +I+EVK +GLRGRGG GF 
Sbjct: 116 KQQRVVLSNCGRVDPESIKEYIAEDGYQAVGETLTTMTSQEVIDEVKEAGLRGRGGGGFP 175

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW F      D   Y++ NADE +PG   DR I+  +PH +IEG +IA++AIGA   
Sbjct: 176 TGIKWQFAHDSEDD-KKYIICNADEGDPGAFMDRSILEGDPHRVIEGMIIAAYAIGASEG 234

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+    E L+ A+++    GLLG N  + G+D  + +  GAGA++CGEETAL+ 
Sbjct: 235 YIYVRAEYPLAIERLEKAIEQAEEYGLLGDNLFESGFDFKLQIKKGAGAFVCGEETALMN 294

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G PR +PPFPA  GL+G P+ +NNVE+ A VP I+ +GA  YS  G E++ GTK
Sbjct: 295 SIEGKRGMPRPRPPFPAQKGLWGYPSNINNVETYANVPVIINQGADEYSKVGTEDSTGTK 354

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+I+G +      E  M IT  E+I    GGI  G  +  AV  GG S  CLP  ++  
Sbjct: 355 IFAITGKIQNTGLAEVPMGITMREIIYDVGGGI-MGGKDFKAVQIGGPSGGCLPEEKL-D 412

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DYD L E G+ +G+  ++VMD  T ++        F + ESCG+CTPCREGT  M+ 
Sbjct: 413 LSVDYDSLIEAGAMMGSGGLVVMDEDTCMVDVAKFFLDFTQSESCGKCTPCREGTKRMLE 472

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R+  G  ++ +I+LL E+S +I+  ++C LG +A  P+   I+ FR   E  I +  
Sbjct: 473 ILKRITAGEGKEGDIELLEELSHHIKSTSLCGLGQSAPNPVLSTIQYFRDEYEAHIYE-E 531

Query: 421 RCN 423
            C 
Sbjct: 532 TCP 534


>gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
 gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
          Length = 595

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 146/426 (34%), Positives = 235/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + +++ ++   +  + ++L E   D +I  +K SGLRGRGGA
Sbjct: 109 FYKKQMRVALRNCGVIDPEDINEYIAYDGYQALGRVLTEMTPDDVIEILKTSGLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T +KW+F     +    Y+  NADE +PG   DR ++  +PH ++E   IA + IG+
Sbjct: 169 GFPTWLKWNFAKAQPAG-QKYVCCNADEGDPGAFMDRSVLEGDPHAVLEAMTIAGYTIGS 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + L+ A+++    G LG +    G+D DI +  GAGA++CGEETA
Sbjct: 228 NQGYIYVRAEYPIAVKRLEIAINQSREMGFLGKDIFGSGFDFDIELRLGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G P+ +NNVE+ A +P I+ +G  W++  G E ++
Sbjct: 288 LMTSIEGHRGEPRPRPPFPAVKGLFGKPSILNNVETWANIPQIILKGPEWFASMGTEKSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G ++    VE  M  T  E+  +  GG         A   GG S  C+PA  
Sbjct: 348 GTKVFALGGKIHNTGLVEVPMGTTLREI-IEEIGGGIPNGKKFKAAQTGGPSGGCIPAS- 405

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR GT  
Sbjct: 406 LIDTEIDYDNLLAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTKR 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++++ +G A   ++D + E+   I+   +C LG  A  P+   ++ FR      + 
Sbjct: 466 LYEMLDKITRGNATLEDLDKMEELCYYIKENALCGLGQTAPNPVLSTLRYFRDEYIAHVV 525

Query: 418 QYHRCN 423
              RC 
Sbjct: 526 D-KRCP 530


>gi|190895760|gb|ACE96393.1| esterase/lipase/thioesterase [Populus tremula]
 gi|190895774|gb|ACE96400.1| esterase/lipase/thioesterase [Populus tremula]
          Length = 396

 Score =  501 bits (1290), Expect = e-140,   Method: Composition-based stats.
 Identities = 272/396 (68%), Positives = 317/396 (80%), Gaps = 1/396 (0%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           N+YGL       +M RG W     ++ KG DWI+NEVK SGLRGRGGAGF +G+KWSFMP
Sbjct: 1   NVYGLHDPFFKGAMKRGDWYRTKDLVLKGTDWIVNEVKKSGLRGRGGAGFPSGLKWSFMP 60

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K+   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A+IY+RGE++
Sbjct: 61  KISDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 120

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
            ER +L+ A  E Y +GLLG N+   GYD D+ +H+GAGAYICGEETALLESLEGK+G+P
Sbjct: 121 NERINLERARKEAYEAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 180

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTKLF +SGHVN
Sbjct: 181 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCVSGHVN 240

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGGSSVP LP       +MDYD LK
Sbjct: 241 KPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALK 300

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            + SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREGTGW+  +MERL  G 
Sbjct: 301 AVTSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 360

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           A+  EID+L EV+K IEG TICALGDAAAWP+QGLI
Sbjct: 361 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLI 396


>gi|323703026|ref|ZP_08114682.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532039|gb|EGB21922.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 613

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 250/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
            +  Q RI   +   +  + +   +S G +  ++K L+    + +I E+  SGLRGRGGA
Sbjct: 116 FIDKQQRIILKHCGVVNPEDIDSYLSVGGYKAIEKALKSMTPEQVIEEISRSGLRGRGGA 175

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWSF  K    R  Y++ NADE +PG   DR ++   PH+++EG +IA +A+GA
Sbjct: 176 GFPTGTKWSFARKSP-GREKYVICNADEGDPGAFMDRSVLESNPHSVLEGMLIAGYAMGA 234

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY+R E+    + L+ A+ +    G LGS+     +  +I++  GAGA++CGEETA
Sbjct: 235 ENGYIYIRAEYPLAIKRLKIAIAQALEKGYLGSHILDSNFSFNIMIREGAGAFVCGEETA 294

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G  R++PPFPA  G++G PT++NNVE+ A VP I+  G   +S FG EN++
Sbjct: 295 LIASVEGKRGMTRIRPPFPAQSGVWGKPTSINNVETFANVPWIILNGGDSFSRFGTENSK 354

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M IT +E++    GG+  G   L AV  GG S  C+PA  
Sbjct: 355 GTKVFALAGSIARGGLVEVPMGITINEIVYDVGGGLSSGRK-LKAVQTGGPSGGCIPAS- 412

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK++G+ +G+  +++MD ST ++        F K ESCG+CT CR GT  
Sbjct: 413 LADTQVDYDSLKKIGAIMGSGGMLIMDDSTCMVDVAKFFLKFTKSESCGKCTFCRVGTKQ 472

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +++++ER+  G  +  +I+LL E+ + I    +C LG     P+   IK FR   E  I 
Sbjct: 473 LLKILERITNGEGRDGDIELLEELGQKISAGALCGLGQTVPNPVLTTIKYFRHEYEAHIF 532

Query: 418 QYHRCN 423
               C 
Sbjct: 533 D-KACP 537


>gi|88607132|ref|YP_505037.1| NADH dehydrogenase I subunit F [Anaplasma phagocytophilum HZ]
 gi|88598195|gb|ABD43665.1| NADH dehydrogenase I, F subunit [Anaplasma phagocytophilum HZ]
          Length = 426

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 258/418 (61%), Positives = 315/418 (75%), Gaps = 2/418 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + D+D IFTNL G +   L+ + SRG W N  ++L  GRD II E+K SGLRGRGGAGF 
Sbjct: 1   MRDEDSIFTNLSGKESPYLAAAKSRGTWFNTKELLALGRDKIIQEIKDSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG+KWSFMPK        YLVVNADESEPGTCKDRDI+R++PH ++EG +IA FA+G   
Sbjct: 61  TGLKWSFMPKALPEGSSAYLVVNADESEPGTCKDRDIIRYDPHKILEGILIAGFAMGVTA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L  A+ E YA GLLG N+   GY++++ +H GAGAYICGEE+A +
Sbjct: 121 AYIYIRGEFYNEYTVLFKALQEAYADGLLGENACGSGYNLNVFIHRGAGAYICGEESAQI 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EG+KG PRLKPPFPA VGLYG PTTVNNVE+IAVV  ILRRG+ W+S  G  NN GT
Sbjct: 181 ESIEGRKGMPRLKPPFPAAVGLYGSPTTVNNVETIAVVGDILRRGSGWFSSLGIPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KVFCISGHVNNPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKHICD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+   SGLGTA +IVMD+STD+I+AI R+S FY HESCGQC+PCREGTGWM 
Sbjct: 301 DITMDFDSLRAAKSGLGTAGLIVMDKSTDLIEAIERISSFYMHESCGQCSPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           R+M +++ G A++ EID L +V+  IEG TICAL DAA WPIQGL ++FR ++EER+ 
Sbjct: 361 RMMRKMLDGTAEESEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRSVVEERLR 418


>gi|217077616|ref|YP_002335334.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
 gi|217037471|gb|ACJ75993.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
          Length = 537

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 165/410 (40%), Positives = 245/410 (59%), Gaps = 6/410 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N+  +  K++ + ++   +  + K L    + IINE+K SGLRGRGGAGF TG+KW 
Sbjct: 110 VTRNIGKIDPKNIDEYIANDGYFALAKALSMKPEEIINEIKESGLRGRGGAGFPTGLKWE 169

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F  K  +D   Y+V NADE EPGT KDR IM  +PH++IE  +IA +A+GA   +IY+RG
Sbjct: 170 FAYKTDAD-QKYIVCNADEGEPGTYKDRLIMEGDPHSVIEAMIIAGYAVGATKGYIYIRG 228

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    E+++ A+++ Y  G LG N    G++ D+ +  GAGAYICGEETALLES+EG  
Sbjct: 229 EYYGSIENIKKAINDAYEYGFLGENILNSGFNFDLSIRLGAGAYICGEETALLESIEGHA 288

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PRLKPPFP   GL+G PT +NNVE++A VP I+  GA W+   G EN+ GTK+F  +G
Sbjct: 289 GRPRLKPPFPPQKGLFGKPTVINNVETLANVPQIILNGAEWFKQIGTENSPGTKVFCFAG 348

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           ++N    VE  M +T  EL+    G        L  V  GG +   +   ++    +DYD
Sbjct: 349 NLNNRGIVELPMGVTVKELLIYAGG---ISGGKLKMVQTGGIAGTFIDESKL-DVPLDYD 404

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
              + G  LG+  ++ ++ S  ++     +  F++HESCG+CTPCREGT   + ++E++ 
Sbjct: 405 SFAKYGVSLGSGVILGVNDSHCVVDIAKNVMEFFRHESCGKCTPCREGTKIAVEILEKMS 464

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           K  A   +++ L E+S   +   +C LG +   P+  LI NF+   E  I
Sbjct: 465 KFEATMDDLEHLIEISNVAKEAALCGLGQSFPVPLLSLIDNFKEEFEMHI 514


>gi|148269832|ref|YP_001244292.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|147735376|gb|ABQ46716.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
          Length = 545

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 171/423 (40%), Positives = 254/423 (60%), Gaps = 6/423 (1%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
            ++ RI   N+  +    + + ++R  +  + K L+     +I E+K SGLRGRGGAGF 
Sbjct: 107 AEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFP 166

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW F  K  +D   Y++ NADE EPGT KDR IM  +PH+LIEG +IA +A+GA   
Sbjct: 167 TGLKWEFTYKASAD-QKYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKG 225

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+    E L+ AV++ Y  G LG N    G++ D+ +  GAGAY+ GEETAL+E
Sbjct: 226 YIYIRGEYHSSIEILKKAVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIE 285

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK  +PRLKPP+P   GL+G PT VNNVE+   VP I+  GA W+  FG E++ GTK
Sbjct: 286 SIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTK 345

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G+V     VE  M +T  +LI K  GGI GG   L  V  GGS+   +   ++  
Sbjct: 346 VFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK-LKVVQTGGSAGTFIGPDKL-D 403

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D   + G  LG+  ++V D +  ++     +  F++HESCG+CTPCREGT  ++ 
Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVN 463

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+ +G  +K ++D L E+++N    + C LG +   P+  ++ NF       I    
Sbjct: 464 ILERISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNFEEEFRAHIS-AD 522

Query: 421 RCN 423
           +C 
Sbjct: 523 KCP 525


>gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 629

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 157/427 (36%), Positives = 243/427 (56%), Gaps = 8/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +I   NL  +    + D ++ G +  + K+L E   + +I EVK SGLRGRGGA
Sbjct: 129 FFRHQLKIALRNLGKINPMDIEDYLAVGGYTALAKVLTEMTPEEVIEEVKKSGLRGRGGA 188

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG- 117
           GF TG+KW    +       +++ N DE +PG   D  +M  +PH++IEG +I ++AIG 
Sbjct: 189 GFPTGVKWEGARRAP-GARKFVICNGDEGDPGAFMDASLMEGDPHSVIEGMIICAYAIGN 247

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
               +IYVR E+    + L  A+++  A G LG +    G+  DI +  GAGA++CGE T
Sbjct: 248 CREGYIYVREEYPLAVKRLSIALEQARAWGFLGEDILGTGFSFDIQLKKGAGAFVCGEST 307

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
            L+ S+EGK+  PR+ PP     GL+G PT +NNVE+ A +P I+ +G  WY+ +G E +
Sbjct: 308 TLMMSIEGKRPSPRVTPPRSVEKGLWGMPTCLNNVETFANIPIIILKGGEWYAQYGTETS 367

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK F I+G V     +E  M +T  E+++K  GG+      L AV  GG S  C+P  
Sbjct: 368 KGTKAFCITGKVRNTGLIEVPMGMTLREIVQKLGGGMLEEA-QLKAVQTGGPSGGCIPEE 426

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DY+ L  +GS +G+  ++V+D  T +++       F + ESCG+C PCR GT 
Sbjct: 427 YL-DTPVDYESLTRLGSMMGSGGMVVVDEGTCMVEFARFFLNFTQQESCGKCPPCRIGTY 485

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M++++ R+V G  Q+ +I+LL E+ + I+  ++C LG +A  P+   IK FR   E  I
Sbjct: 486 EMLQILNRIVAGEGQEGDIELLEELGRKIKETSLCGLGQSAPNPVLSTIKYFREEYEAHI 545

Query: 417 DQYHRCN 423
            +  RC 
Sbjct: 546 RE-KRCP 551


>gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment
           culture clone BF]
          Length = 595

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 167/426 (39%), Positives = 250/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
              +Q RI   N   +    + + ++R  +  + K+L +   + ++N VK SGLRGRGG 
Sbjct: 110 FFQNQLRIALRNCGHINPDDVEEYIARDGYRALGKVLAEYKPEDVVNVVKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K  SD   Y++ NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGLKWELTRKSTSDM-KYVICNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              F+YVR E+    E L  A+ +    GLLG N  + G+  DI +  GAGA++CGEETA
Sbjct: 229 QQGFVYVRAEYAIAVERLTTAIKQAREKGLLGKNLFESGFSFDIDLRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE++A +P I+  GA W++GFG E ++
Sbjct: 289 LITSIEGNRGEPRPRPPFPAQQGLWGKPTLINNVETLANIPMIILNGADWFAGFGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+I+G +     +E  M IT  ++I    GGI  G +   A   GG S  C+PA  
Sbjct: 349 GTKVFAIAGKIGNTGLIEVPMGITLRDIIYNIGGGIPDGRE-FKAAQTGGPSGGCIPAK- 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L E+GS +G+  +I+MD ST ++        F   ESCG+CTPCR GT  
Sbjct: 407 LIDTPIDYDSLLEIGSMMGSGGLIIMDDSTCMVDIAKFYLEFTCDESCGKCTPCRVGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  ++ +IDLL E+   I+  ++C LG +A  P+   ++ F       + 
Sbjct: 467 MLEILERITEGKGREEDIDLLQELGHGIKETSLCGLGQSAPNPVLSTLRYFEDEYIAHVR 526

Query: 418 QYHRCN 423
               C 
Sbjct: 527 D-KVCP 531


>gi|153812806|ref|ZP_01965474.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
 gi|149831166|gb|EDM86255.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
          Length = 623

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 153/425 (36%), Positives = 241/425 (56%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ + ++ G +  + K   +     +I+EV  SGLRGRGGA
Sbjct: 136 FLNQQTRIVLENCGNINAESIDEYIAVGGFQAMAKAFFDMSPQDVIDEVTKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS + +   ++  Y+V N DE +PG   D  +M  +P+ +IEG  IA++A+GA
Sbjct: 196 GFPAGKKWSQVARQK-EKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++  A GLLG N    G +  + ++ GAGA++CGE +A
Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEAYGLLGDNILGSGVNFHLHINRGAGAFVCGEGSA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I+ +GA W+   G E + 
Sbjct: 315 LTASIEGKRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILQGADWFRTIGTEGSP 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FS++G +     +E  M  +   +I    GG++ G      V  GG S  CL   Q
Sbjct: 375 GTKTFSLTGAIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIEDQ 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D +K + + +G+  ++VMD +T +++       F + ESCG+C PCREGT  
Sbjct: 434 I-DRPLDFDSVKSLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  +  ++D L E++  ++   +C LG +A  P+   +K FR   EE I 
Sbjct: 493 MLEILERIVDGKGEMSDLDELEELATMVQSMALCGLGKSAPLPVISTLKRFRDEYEEHIK 552

Query: 418 QYHRC 422
              +C
Sbjct: 553 D-KKC 556


>gi|160947614|ref|ZP_02094781.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
 gi|158446748|gb|EDP23743.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
          Length = 531

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 151/426 (35%), Positives = 233/426 (54%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI    +G+  + S+ + ++ G +  + K++     + ++NE+K SGLRGRGGA
Sbjct: 46  FFEKQTRIALKNFGIVDEHSVKEYVALGGYYALAKVISSYTPEEVVNEMKNSGLRGRGGA 105

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +       Y+V NADE +PG   DR I+  +PH+++EG  I  +AIGA
Sbjct: 106 GFPTGRKWEGAMQQPPG-QKYVVCNADEGDPGAFMDRSILEGDPHSVLEGMAICGYAIGA 164

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+ +   +L+ A+ +     LLG N     +   + +  GAGA++CGE TA
Sbjct: 165 DRGFIYVRAEYPKAVINLREAIKKAEDENLLGDNIMGTDFSFHVELRLGAGAFVCGEGTA 224

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G PR K       GL+  PT +NNVE+ A VP I+ +G+ WY   G E++ 
Sbjct: 225 LIESIEGKRGMPRTKVYRTTVKGLFQKPTVLNNVETFANVPQIMYKGSDWYRSIGTEDSS 284

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     VE  M  T +E++    GG       + AV  GG S  C+P   
Sbjct: 285 GTKVFALVGKVANAGLVEVPMGTTINEIVYDIGGGTGND-KKVKAVQTGGPSGGCIPTDY 343

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +D+  L ++GS +G+  ++VMD +  ++        F   ESCG+C PCREGT  
Sbjct: 344 -FDTPVDFGSLAKIGSIMGSGGMVVMDETDCMVDIARFFLDFTVEESCGKCVPCREGTKR 402

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G  +  +I+ L ++S+ I   ++C LG  AA P+   +  FR   E  I 
Sbjct: 403 MLELLEKITSGKGEDGDIERLEDLSETITVASLCGLGQTAANPVVSTLHYFRNEYEAHIY 462

Query: 418 QYHRCN 423
              +C 
Sbjct: 463 D-KKCP 467


>gi|167646790|ref|YP_001684453.1| NADH dehydrogenase subunit I F [Caulobacter sp. K31]
 gi|167349220|gb|ABZ71955.1| NADH-quinone oxidoreductase, F subunit [Caulobacter sp. K31]
          Length = 439

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 292/421 (69%), Positives = 340/421 (80%), Gaps = 1/421 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +L D+DRIFTNLYGLQ   L  +  RG W+    IL+ GRDWII+ +K SGLRGRGGAGF
Sbjct: 4   ILEDKDRIFTNLYGLQDWGLEGAKKRGCWNGTKDILDAGRDWIIDNMKNSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   D RPHYLVVNADESEPGTCKDR+IMRH+PH LIEGC+IAS A+ AH
Sbjct: 64  GTGLKWSFMPKEVKDGRPHYLVVNADESEPGTCKDREIMRHDPHLLIEGCLIASRAMLAH 123

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+RGE++RERE L+AA+ + Y + L+G N+  G+D D+ VHHGAGAYICGEETALL
Sbjct: 124 ACYIYIRGEYVREREVLEAAIKQAYEAKLIGKNNVHGWDFDLYVHHGAGAYICGEETALL 183

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPRLKPPFPA  GLYG PTTVNNVESIAV  TILRRGA+W++GFGR NN GT
Sbjct: 184 ESLEGKKGQPRLKPPFPAGAGLYGMPTTVNNVESIAVAGTILRRGAAWFAGFGRPNNTGT 243

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGHVN PC VEE+MSI F +L+E HCGGIRGGW NL AVIPGGSSVP +PA Q  
Sbjct: 244 KLFCVSGHVNLPCNVEEAMSIPFRQLMEDHCGGIRGGWGNLKAVIPGGSSVPMIPAEQCE 303

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ + SGLGTAAVIVMD+ TD+++AI RLS FYKHESCGQCTPCREGTGWM 
Sbjct: 304 DLPMDFDALRNLRSGLGTAAVIVMDKDTDLVRAIARLSYFYKHESCGQCTPCREGTGWMW 363

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           RVMER+  G A  +EID L +V+  +EG TICALGDAAAWPIQGL ++FR  +E+RI  Y
Sbjct: 364 RVMERMATGEADPKEIDTLLDVTTQVEGHTICALGDAAAWPIQGLFRHFRHEVEDRIASY 423

Query: 420 H 420
            
Sbjct: 424 R 424


>gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 238/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
             + Q RI   N   +   ++ + + R  +  + K+L+   RD +INE+K SGLRGRGG 
Sbjct: 111 FYSKQMRITLRNCGYINPDNIDEYIGRDGYQGLAKVLQDLSRDDVINEMKTSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKW F  K   D   +++ NADE +PG   DR ++  +PH ++EG  I ++A+GA
Sbjct: 171 GFPTGMKWEFCKKSPGD-KKFVICNADEGDPGAFMDRSLLEGDPHAILEGMAIGAYAMGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+    + L  A+ +    GLLG N     +  +I V  GAGA++CGEETA
Sbjct: 230 DEGYIYCRAEYPLAIKRLHQAIAQAEEYGLLGKNIMGTDFSFEIHVKEGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPAN GL+  P+ +NNVE+ A V  I+  G +WY+  G E ++
Sbjct: 290 LMASIEGQRGMPRPRPPFPANKGLWEKPSNINNVETWANVAQIILHGGAWYASVGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     VE  M  T  E++ +  GGI        AV  GG S  CL    
Sbjct: 350 GTKVFALTGKVKNTGLVEVPMGTTIREVVFEIGGGILND-KKFKAVQIGGPSGGCLTEEH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + Y+ L   G+ +G+  ++V+D  T ++        F + ESCG+C PCREGT  
Sbjct: 409 L-DLPISYESLTAAGAIMGSGGLVVVDEDTCMVDVAKFFLEFTQAESCGKCVPCREGTKK 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+ +G  Q+ +I+ L  +   I+  ++C LG  A  P+   I+ FR   E  I 
Sbjct: 468 MLDILTRITEGKGQEGDIEKLQYLGTQIKDASLCGLGQTAPNPVLTTIRYFRHEYEAHIK 527

Query: 418 QYHRCN 423
              +C 
Sbjct: 528 D-KKCP 532


>gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 596

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q RI   N+  +   ++ + ++R  +  + K+L E   + +I EVK SGLRGRGGA
Sbjct: 110 FFKNQVRIALRNVGFIDPLNIEEYIARDGYSALAKVLTEMKPEEVIEEVKKSGLRGRGGA 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K   +   Y+V NADE +PG   DR IM  +PH++IEG +I  +AIGA
Sbjct: 170 GFPTGLKWELGRKAKGE-EKYIVCNADEGDPGAFMDRSIMEGDPHSVIEGMLIGGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F+Y+R E+    + L  A+++    G+LG N     +  DI +  GAGA++CGEETA
Sbjct: 229 KKGFVYIRAEYPLAIKRLTVALEQARNYGILGENILGTDFSFDIEIRIGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PPFP N GL+G PT +NNVE+ A +P I+  GA W+S FG E ++
Sbjct: 289 LIASIEGKRGMPRPRPPFPVNSGLWGKPTVINNVETWANIPPIILNGAEWFSSFGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M IT  E++    G    G     AV  GG +  C+PA  
Sbjct: 349 GTKVFALAGKINMTGLIEVPMGITLREVVYDIGG-GIPGGKKFKAVQIGGPAGGCIPAEY 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ +  +G+ +G+  +IVMD    ++        F + ESCG+C PCR GT  
Sbjct: 408 L-DTPIDYESITALGAIMGSGGLIVMDEDNCMVDVAKFFLSFTQDESCGKCVPCRVGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++ KG   + ++  L E++  +   ++C LG  A  P+   +K FR      I 
Sbjct: 467 MLDILDKITKGEGTEEDLVELEELAYTVRNTSLCGLGKGAPNPVLTTLKYFRDEYLAHIR 526

Query: 418 QYHRCN 423
              +C 
Sbjct: 527 D-KKCP 531


>gi|295110158|emb|CBL24111.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus obeum A2-162]
          Length = 623

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 154/425 (36%), Positives = 243/425 (57%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ + ++ G +  + K   +     +I+EV  SGLRGRGGA
Sbjct: 136 FLNQQTRIVLENCGNIDAESIDEYIAAGGFQAMAKAFFDMSPQEVIDEVTKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS + +   ++  Y+V N DE +PG   D  +M  +P+ +IEG VIA++A+GA
Sbjct: 196 GFPAGKKWSQVARQK-EKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMVIAAYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++  A GLLG N    G +  + ++ GAGA++CGE +A
Sbjct: 255 ENGYIYVRAEYPLSVKRLRMAIEQAEAYGLLGDNILGSGINFHLHINRGAGAFVCGEGSA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I+ +GA W+   G E + 
Sbjct: 315 LTASIEGKRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILQGADWFRTIGTEGSP 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FS++G +     +E  M  +   +I    GG++ G      V  GG S  CL   Q
Sbjct: 375 GTKTFSLTGAIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIEDQ 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D +K + + +G+  ++VMD +T +++       F + ESCG+C PCREGT  
Sbjct: 434 I-DRPLDFDSVKSLDAIMGSGGLVVMDENTCMVEVARFFMNFTQRESCGKCVPCREGTKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V+G  +  ++D L E++  ++   +C LG +A  P+   +K FR   EE I 
Sbjct: 493 MLEILERIVEGKGEMSDLDELEELATMVQSMALCGLGKSAPLPVISTLKRFRDEYEEHIR 552

Query: 418 QYHRC 422
              +C
Sbjct: 553 D-KKC 556


>gi|189499447|ref|YP_001958917.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
 gi|189494888|gb|ACE03436.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
          Length = 594

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 243/426 (57%), Gaps = 8/426 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGA 58
           L  Q RI   N+  +  +SL     RG + +++KI+ +G   + +I EV+ SGLRGRGGA
Sbjct: 106 LDRQTRIALRNIGQVDPQSLDAYRERGGYRSIEKIITEGIKPEQVIEEVRVSGLRGRGGA 165

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T +KW F  +       YL+ N DE +PG   DR ++  +PH  +EG +IA++AIGA
Sbjct: 166 GFPTAVKWGF-ARSAKGEKKYLICNGDEGDPGAFMDRSLLEGDPHNALEGMLIAAYAIGA 224

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+    E  + A+D+   +GLLG+N     +D D+ +  GAGA++CGEETA
Sbjct: 225 SSGYAYIRAEYPLAVEHFRKAIDDARKAGLLGNNILGSSFDFDVTIKQGAGAFVCGEETA 284

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR++PPFPA  GL+G PT +NNVES+A +P I+  G + Y+  G E ++
Sbjct: 285 LIASIEGERGMPRIRPPFPAVKGLFGKPTIINNVESLANLPWIIEHGGAAYAEIGTEKSK 344

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M  T  E++    GG       + AV  GG S  C+P   
Sbjct: 345 GTKVFALAGPIKRGGLVEVPMGTTVREVLYDIGGG-SSAGRPIKAVQLGGPSGGCIPES- 402

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    ++Y+ L   G+ +G+  ++VMD  + ++        F + ESCG+CT CR GT  
Sbjct: 403 LFDTPIEYEALNATGAIMGSGGMVVMDTKSCMVDIARYFLEFTQIESCGKCTFCRIGTLR 462

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ R+  G     +ID L +++  +   ++C LG  A  P+   +K FR      ++
Sbjct: 463 MKELLTRICDGQGTMDDIDTLEDIAHQVRSSSLCGLGQTAPNPVLTTLKYFRDEYVAHVE 522

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 523 E-KRCP 527


>gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 625

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + + D +  G +  + K+L +   + + +E+  SGLRGRGGA
Sbjct: 139 FYRRQTRLVLKNCGKIDAEDIRDYIVCGGYKALAKVLMKMTPEEVCDEILKSGLRGRGGA 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  +    +D   Y+V N DE +PG   DR +M  +PH ++EG +IA +A GA
Sbjct: 199 GFPTGKKWKQVLMQDADI-KYVVCNGDEGDPGAFMDRSVMEGDPHQMLEGMIIAGYASGA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVRGE+    + LQ A+ + +  G LG N     +D DI ++ GAGA++CGE +A
Sbjct: 258 REGYIYVRGEYPLAVKRLQVAIQQAHEWGFLGKNILGSNFDFDIHINKGAGAFVCGEGSA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L +S+EG +G PR +PP     GL+G PT +NNVE+ A VP I+  GA WY   G   + 
Sbjct: 318 LTQSIEGFRGMPRPRPPRTVEKGLFGKPTVLNNVETFANVPLIISNGADWYLSIGTPGSP 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G++N    +E  M IT  ++I     GIR       AV  GG S  CL    
Sbjct: 378 GTKIFALTGNINNTGLIEVPMGITLRQIIFDIGAGIR-NGKKFKAVQIGGPSGGCLTEEH 436

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MD+D L+  G+ +G+  ++V+D  + +++       F + ESCG+C PCREGT  
Sbjct: 437 L-DISMDFDSLEAAGAMVGSGGLVVLDEDSCMVEVARFFMDFTQRESCGKCVPCREGTKR 495

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++V G A  +++ LL E+++ ++  ++C LG  A  P+   +K F+      + 
Sbjct: 496 MLEILEKIVSGNANIKDLQLLEELAEVVKIGSLCGLGKTAPNPVLTTMKYFKDEYMAHVV 555

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 556 E-KRCP 560


>gi|302342952|ref|YP_003807481.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301639565|gb|ADK84887.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 596

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 163/426 (38%), Positives = 244/426 (57%), Gaps = 6/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q  I   N   L  +S+ + ++R  +  + K L E     I+NEVK SGLRGRGG 
Sbjct: 111 FFAHQQLIALRNRGLLDAESIDEYIARDGYRALAKALTEMSPQDIVNEVKKSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  +   +   Y++ NADE +PG   DR I+  +PH++IEG  IA+ AIGA
Sbjct: 171 GFPTGLKWEFCQRTPGEI-KYVLCNADEGDPGAFMDRSILEADPHSVIEGMTIAAKAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  F+Y R E+    E L+ A+++    GLLG N    G+  ++ ++ GAGA++CGEETA
Sbjct: 230 HHGFVYCRAEYPLAIERLKLAIEKATEYGLLGDNILDTGFSFNLQIYQGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PPFPA  GLY  PT +NNVE+ A V  I+ +G  WY+  G   ++
Sbjct: 290 LMRSIEGKRGMPRPRPPFPAVKGLYDKPTVLNNVETWANVAPIIIKGGDWYASIGTAGSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++GHVN    VE  M  +   +I    GG+        AV  GG S  C+P   
Sbjct: 350 GTKVFALTGHVNNIGLVEVPMGTSLRTIIYDIGGGMPKKHRKFKAVQLGGPSGGCVPEQY 409

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +     DY+ + + G+ +G+  +IVMD ST ++        F + ESCG+CTPCREGT  
Sbjct: 410 L-DLPCDYEEIIKAGAIMGSGGMIVMDDSTCMVDMARFFMEFVQDESCGKCTPCREGTRR 468

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M++++E++ +G  +  ++DLL E++  I+   +C LG     P+   ++ FR      I 
Sbjct: 469 MLQILEKICEGRGEMSDLDLLEELAAMIKDSALCGLGQTGPNPVLSTLRYFRDEYVAHIV 528

Query: 418 QYHRCN 423
              +C 
Sbjct: 529 D-KKCP 533


>gi|116748290|ref|YP_844977.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116697354|gb|ABK16542.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 572

 Score =  499 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 10/431 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
           +   Q+RI   N   +   S+ + + R  +  + K L       ++ E+K SGLRGRGGA
Sbjct: 136 LFKKQERIVLRNTLYIDPLSIEEYIGRDGYAALAKALTRMRPGEVVEEIKRSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTGMKWSF     +  P Y+V N DE +PG   DR ++  +PH++IEG  I   AIGA
Sbjct: 196 GFSTGMKWSFSA-AAAGTPKYVVCNGDEGDPGAFMDRSVLEGDPHSVIEGMAICGRAIGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    E L+ A+ +    GLLG +    G++ DI +  GAGA++CGEETA
Sbjct: 255 EQGYVYVRAEYPLAIERLEHAIRKAREFGLLGKDIFGTGFNFDIEIRIGAGAFVCGEETA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++G+PR +PPFPA  G++G PT +NNVE+ A +P I+ +GA W++  G   ++
Sbjct: 315 LLASVEGRRGEPRPRPPFPAIEGVFGKPTVINNVETWANIPAIIFKGADWFASIGTPKSK 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M  T  E++    GGI    +   AV  GG S  C+PA  
Sbjct: 375 GTKVFALAGKITNTGIVEVPMGTTLREMVFDIGGGIPKKKE-FKAVQTGGPSGGCIPARH 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +G+ +G+  +IVMD+ T ++        F   ESCG+C+PCR GT  
Sbjct: 434 L-DTPIDYDSLGALGAIMGSGGMIVMDQDTCMVDIAKFFLEFCVDESCGKCSPCRIGTKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ER+  G  ++ +I+LL E++  I+   +C LG  A  P+   I+ FR   E+ I 
Sbjct: 493 MHEILERISTGHGREGDIELLVELATTIKTTALCGLGQTAPNPVLSTIRYFRDEYEQHIR 552

Query: 418 QY----HRCNF 424
            +      C+F
Sbjct: 553 DHVCVAKVCDF 563


>gi|281412285|ref|YP_003346364.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|281373388|gb|ADA66950.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 545

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 168/423 (39%), Positives = 254/423 (60%), Gaps = 6/423 (1%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
            ++ RI   N+  +    + + ++R  +  + K L+     +I E+K SGLRGRGGAGF 
Sbjct: 107 AEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFP 166

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW F  K  +D   Y++ NADE EPGT KDR IM  +PH+LIEG +IA +A+GA   
Sbjct: 167 TGLKWEFTYKASAD-QKYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKG 225

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+    E L+ A+++ Y  G LG N    G++ D+ +  GAGAY+ GEETAL+E
Sbjct: 226 YIYIRGEYHSSIEILKKAIEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIE 285

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK  +PRLKPP+P   GL+G PT VNNVE+   VP I+  GA W+  FG +++ GTK
Sbjct: 286 SIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTDSSPGTK 345

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G+V     VE  M +T  +LI K  GG+ GG   L  V  GGS+   +   ++  
Sbjct: 346 VFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGVEGGRK-LKVVQTGGSAGTFIGPDKL-D 403

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D   + G  LG+  ++V D +   +     +  F++HESCG+CTPCREGT  ++ 
Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADETHCAVDLALAVMRFFEHESCGKCTPCREGTRMIVN 463

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+ +G  +K ++D L E+++N    + C LG +   P+  ++ NF       I   +
Sbjct: 464 ILERISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNFEEEFRAHI-GAN 522

Query: 421 RCN 423
           +C 
Sbjct: 523 KCP 525


>gi|83590721|ref|YP_430730.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
 gi|83573635|gb|ABC20187.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
          Length = 592

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 165/425 (38%), Positives = 247/425 (58%), Gaps = 6/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q R +  N   +  +++   ++   +  + K L   R+ +IN +K SGLRGRGGAG
Sbjct: 107 FYRQQSRHVLKNCGHINPENIDAYLAVEGYQGLKKALALPREEVINIIKESGLRGRGGAG 166

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW +  K   D   Y+V NADE +PG   DR ++  +PH ++EG +IA++AIGA 
Sbjct: 167 FPTGLKWEYTFKAPGD-RKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMLIAAYAIGAR 225

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVR E+    + L+ A+ +    G  G       +  ++ +  GAGA++CGEETAL
Sbjct: 226 EGYIYVRAEYPLAVQRLRIALAQARERGFCGERILGTDFSCELYIREGAGAFVCGEETAL 285

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L S++G++G PR +PPFPA  GL+G PT +NNVE+ A VP ILRRGA WY+  G E ++G
Sbjct: 286 LASIQGERGMPRPRPPFPARQGLWGQPTNINNVETYANVPLILRRGAGWYASLGTEKSKG 345

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G V     VE  M IT  E+I    GGI        AV  GG S  CLPA  +
Sbjct: 346 TKIFALTGKVKNTGLVEVPMGITLREIIFNIGGGILEDRG-FKAVQIGGPSGGCLPAEHL 404

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L   G+ +G+  ++VMD ST +++       F + ESCG+CTPCREG   M
Sbjct: 405 -DLPVDYDSLTAAGAMMGSGGLVVMDDSTCMVEVARFFLNFTQAESCGKCTPCREGIQQM 463

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ R+ +G  ++ +++ L  +++ I+G  +C LG  A  P+   ++ FR   E  I  
Sbjct: 464 LAILTRITRGQGREGDLEQLERLARVIKGTALCGLGQTAPNPVLSTLRYFRAEYEAHIRD 523

Query: 419 YHRCN 423
            HRC 
Sbjct: 524 -HRCP 527


>gi|150021053|ref|YP_001306407.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149793574|gb|ABR31022.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 538

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 165/421 (39%), Positives = 251/421 (59%), Gaps = 7/421 (1%)

Query: 2   LTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           LT + +I T N+  +  K++ + ++   +  + K  +     II E+K SGLRGRGGAGF
Sbjct: 103 LTKEVKIVTRNIGKIDPKNIEEYIANDGYFALAKAFKMKPHEIIEEIKESGLRGRGGAGF 162

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  K  SD   Y+V NADE EPGT KDR IM  +PH++IE  +IA +A+GA  
Sbjct: 163 PTGLKWEFAFKTQSD-QKYIVCNADEGEPGTYKDRLIMEGDPHSVIEAMIIAGYAVGATK 221

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+    E+++ A+ + Y  G LG N     ++ D+ V  GAGAYICGEETALL
Sbjct: 222 GYIYIRGEYYGSVENIKKAIKDAYEYGFLGENILNSNFNFDLSVRLGAGAYICGEETALL 281

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EG  G+PRLKPP+P   GL+G PT +NNVE++A VP I+  GA W+  FG EN+ GT
Sbjct: 282 ESIEGNAGRPRLKPPYPPQSGLFGKPTVINNVETLANVPQIILNGAKWFKQFGTENSPGT 341

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F  +G++N    VE  M +T  EL+    G      D L  V  GG +   +   +  
Sbjct: 342 KVFCFTGNLNNRGIVELPMGVTVRELLVHAGG---VSGDKLKMVQTGGIAGTFIDESK-F 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DYD   +    LG+  ++ ++ +  ++     +  F++HESCG+CTPCREGT  ++
Sbjct: 398 DIPLDYDSFAKYSVSLGSGVILGVNNNHCVVDIAKNVMEFFRHESCGKCTPCREGTKMVV 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++++++ K  A K +++ L E++   +   +C LG +   P+  LI NF+    + I+  
Sbjct: 458 KILDKMSKLEANKEDLERLVEIANTAKETALCGLGQSFPVPLLSLINNFKEEFLDHIENK 517

Query: 420 H 420
           +
Sbjct: 518 N 518


>gi|159027690|emb|CAO89555.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 535

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 150/423 (35%), Positives = 250/423 (59%), Gaps = 7/423 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q +I   N   +    + + ++ G + ++ K L E     ++ E+  SGLRGRGGA
Sbjct: 112 FFSHQVKIVRENSGKIDPDRIEEYIAVGGYQSLYKALYEMTPAQVVEEITKSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K    +  Y++ NADE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 172 GYPTGLKWATVAKQP-GKQKYVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + LQ A+++    GL+GS   +  +D  + +  GAGA++CGEETA
Sbjct: 231 DHGYIYVRAEYPLAIDRLQKAINQAKKFGLMGSQVFESTFDFKVDIRIGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G PR +PP+PA  GL GCPT +NNVES A +  I+R GA+WY+  G   ++
Sbjct: 291 LIHSIEGGRGTPRTRPPYPAQSGLDGCPTLINNVESYANIAAIIREGAAWYANIGTATSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G ++    +E  M IT  E++E+  GG+  G   + AV  GG S  C+PA  
Sbjct: 351 GTKIFALTGKISNNGLIEVPMGITLREIVEEMGGGVPDG--QVKAVQTGGPSGGCIPAN- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L ++GS +G+  ++VMD ST ++K       F + ESCG+C PCR GT  
Sbjct: 408 LLDTPVDYESLAKLGSMMGSGGMVVMDDSTSMVKVAKFYMEFCREESCGKCIPCRTGTVQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ +++ G A   +++ L  + + ++  ++C LG +A  PI   ++ F+      + 
Sbjct: 468 MFELLAKIIDGKADIHDLENLEHLCQMVKETSLCGLGQSAPNPILSTLQYFKEEYLALLQ 527

Query: 418 QYH 420
           +  
Sbjct: 528 ETK 530


>gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 631

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 242/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R    N   +  + +++ ++   +  + K L     + ++ E+KASGLRGRGG 
Sbjct: 146 FYKKQKRTALRNCGLINPEDINEYIAFDGYKALAKTLTTMTPEDVVAEIKASGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKW F  K    +  Y+V NADE +PG   DR I+  +P+ LIE  +I+ +A+GA
Sbjct: 206 GFPTGMKWDFTAKAE-GKEKYVVCNADEGDPGAFMDRSILEGDPNALIEAMIISGYAVGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+      L  A+ +    GLLGSN     +  D+ +  GAGA++CGEETA
Sbjct: 265 QWGYVYVRAEYPIAVGRLDLAIKQAREKGLLGSNILGTDFSFDMEIRLGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EGK+G PR +PPFPA  GL+G PT +NNVE+ A +P I+  GA  +   G E ++
Sbjct: 325 LLNSIEGKRGMPRPRPPFPAVKGLWGKPTLINNVETFANIPQIILHGAEEFIKTGTEKSK 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N+   VE  M  T  E++ +  GGI  G     AV  GG S  C+    
Sbjct: 385 GTKVFALGGKINHTGLVEIPMGTTLREIVYEIGGGIPNG-KAFKAVQTGGPSGGCISVEH 443

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCREGT  
Sbjct: 444 L-DTPIDYDNLIALGSMMGSGGMIVMDEDNCMVDIARFFLDFTVDESCGKCTPCREGTKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  ++ +I+ L  ++++I+  ++C LG  A  PI   +K FR   E  I 
Sbjct: 503 MLEILERITEGKGKEGDIERLESLAQSIKISSLCGLGQTAPNPILSTLKYFRHEYEAHI- 561

Query: 418 QYHRCN 423
           Q  +C 
Sbjct: 562 QDKKCP 567


>gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 596

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 238/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +  G +  + K+L E   D +I  +  +GLRGRGGA
Sbjct: 110 FYKKQHRIALRNCGVINPENIEEYIGTGGYQALGKVLTEMTPDDVIQTLLDAGLRGRGGA 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    +  +D   Y+  NADE +PG   DR ++  +PH L+E   IA +AIG+
Sbjct: 170 GFPTGLKWKLCKQNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGS 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++YVR E+    + L  A+ +     LLG N    G+D D+ +  GAGA++CGEETA
Sbjct: 229 NQGYVYVRAEYPIAVDRLNIAIKQAREMELLGKNIFGTGFDFDVDIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+PR +PPFPA  GL+G P+ +NNVE+ A +P I+  G  W++  G E ++
Sbjct: 289 LMTSIEGKRGEPRPRPPFPAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T   +I++  GGI        A   GG S  C+PA  
Sbjct: 349 GTKVFALGGKINNTGLVEVPMGTTLRTVIDEIGGGIP-NGKKFKAAQTGGPSGGCIPAEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CT CR GT  
Sbjct: 408 -FDIPIDYDNLLSIGSMMGSGGLIVMDEDDCMVDIAKFFLEFTVEESCGKCTACRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++ KG A+  ++D L E+   ++  ++C LG  A  P+   +  FR   E  I 
Sbjct: 467 MLEILEKITKGTAEMEDLDKLEELCHYVKANSLCGLGQTAPNPVLSTLHFFRDEYEAHIK 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-RRCP 531


>gi|170288518|ref|YP_001738756.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|170176021|gb|ACB09073.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
          Length = 545

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 171/423 (40%), Positives = 253/423 (59%), Gaps = 6/423 (1%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
            ++ RI   N+  +    + + ++R  +  + K L+     +I E+K SGLRGRGGAGF 
Sbjct: 107 AEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEVIEEIKRSGLRGRGGAGFP 166

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW F  K  +D   Y++ NADE EPGT KDR IM  +PH+LIEG +IA +A+GA   
Sbjct: 167 TGLKWEFTYKASAD-QKYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKG 225

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+    E L+ AV+  Y  G LG N    G++ D+ +  GAGAY+ GEETAL+E
Sbjct: 226 YIYIRGEYHSSIEILKKAVERAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIE 285

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK  +PRLKPP+P   GL+G PT VNNVE+   VP I+  GA W+  FG E++ GTK
Sbjct: 286 SIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTK 345

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G+V     VE  M +T  +LI K  GGI GG   L  V  GGS+   +   ++  
Sbjct: 346 VFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK-LKVVQTGGSAGTFIGPDKL-D 403

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D   + G  LG+  ++V D +  ++     +  F++HESCG+CTPCREGT  ++ 
Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVN 463

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+ +G  +K ++D L E+++N    + C LG +   P+  ++ NF       I    
Sbjct: 464 ILERISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNFEEEFRAHI-GAD 522

Query: 421 RCN 423
           +C 
Sbjct: 523 KCP 525


>gi|15643000|ref|NP_228042.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|4980726|gb|AAD35319.1|AE001707_6 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
          Length = 545

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 172/423 (40%), Positives = 255/423 (60%), Gaps = 6/423 (1%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
            ++ RI   N+  +    + + ++R  +  + K L+     II E+K SGLRGRGGAGF 
Sbjct: 107 AEETRIVLKNVGEIDPTRIEEYIARDGYFALAKALQMEPGEIIEEIKRSGLRGRGGAGFP 166

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW F  K  +D   Y++ NADE EPGT KDR IM  +PH+LIEG +IA +A+GA   
Sbjct: 167 TGLKWEFTYKASAD-QKYVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKG 225

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+    E L+ AV++ Y  G LG N    G++ D+ +  GAGAY+ GEETAL+E
Sbjct: 226 YIYIRGEYHSSIEILKKAVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIE 285

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK  +PRLKPP+P   GL+G PT VNNVE+   VP I+  GA W+  FG E++ GTK
Sbjct: 286 SIEGKPARPRLKPPYPPTFGLFGKPTVVNNVETFVNVPRIIMNGAEWFKKFGTESSPGTK 345

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G+V     VE  M +T  +LI K  GGI GG   L  V  GGS+   +   ++  
Sbjct: 346 VFSLVGNVVRKGIVEVPMGVTVRDLIFKFGGGIEGGRK-LKVVQTGGSAGTFIGPDKL-D 403

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D   + G  LG+  ++V D +  ++     +  F++HESCG+CTPCREGT  ++ 
Sbjct: 404 VPLDFDSYAKYGVSLGSGVILVADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVN 463

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+ +G  +K ++D L E+++N    + C LG +   P+  ++ NF    +  I    
Sbjct: 464 ILERISRGEGKKEDLDTLREIARNAGETSFCGLGQSIPVPLLSIVDNFEEEFKAHI-GAD 522

Query: 421 RCN 423
           +C 
Sbjct: 523 KCP 525


>gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 595

 Score =  499 bits (1284), Expect = e-139,   Method: Composition-based stats.
 Identities = 157/425 (36%), Positives = 238/425 (56%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q R+   N   +   ++ + ++R  +  + K+L   ++ +INEVKASGLRGRGG G
Sbjct: 111 FYKKQMRVALRNCGFIDPDNIEEYIARDGYAALAKVLTMTQEEVINEVKASGLRGRGGGG 170

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F  K  +D   Y+V NADE +PG   DR I+  +P++++E   I  +AIGA 
Sbjct: 171 FPTGLKWEFAYKNKAD-QKYVVCNADEGDPGAFMDRSILEGDPNSIVEAMAICGYAIGAT 229

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
              +Y+R E+    + L++A+      GLLG N     +  DI +  GAGA++CGEETAL
Sbjct: 230 KGLVYIRAEYPLAIKRLESAIHSAREYGLLGDNIMGSDFCFDIDIRFGAGAFVCGEETAL 289

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG +G+P  KPPFPA  G +G PT VNNVE+ A +P I+ +GA W+S  G E ++G
Sbjct: 290 IHSMEGMRGEPTTKPPFPAASGYWGKPTNVNNVETFANIPVIILKGAEWFSKIGTEKSKG 349

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +N    +E  M IT  E+I    GGI+       AV  GG S  CL    +
Sbjct: 350 TKVFALAGKINNVGLIEVPMGITLREVIYDIGGGIK-NGKQFKAVQTGGPSGGCLTVKDL 408

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D+D L   GS +G+  +IV+D    +         F   ESCG+CTPCR GT  +
Sbjct: 409 -DTPIDFDNLIAKGSMMGSGGMIVLDEDDCMPAVAKFYLEFTAEESCGKCTPCRIGTKRL 467

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++E++  G   + ++ +L E+S+ I+   +C LG  A  P+   +  F       I  
Sbjct: 468 LEILEKITAGKGSEEDLKVLKELSEVIKDTALCGLGQTAPNPVLSTLTTFEDEYLAHIYD 527

Query: 419 YHRCN 423
            H+C 
Sbjct: 528 -HKCP 531


>gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
 gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 140/427 (32%), Positives = 237/427 (55%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + +++ ++   +  + K LE      +I E+K SGLRGRGGA
Sbjct: 141 FYKKQLRIALRNCGHINPEDITEYIANDGYLALAKCLEEMTPQEVIEEMKKSGLRGRGGA 200

Query: 59  GFSTGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TG+KW    K  +     ++V NADE +PG   DR ++  +P++++E   IA +A+G
Sbjct: 201 GFPTGVKWESASKNPAVNGKKFIVCNADEGDPGAFMDRSLLEGDPNSVLEAMAIAGYAVG 260

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IY+R E+    + L+ A+ +   +G+LG N    G++  I + +GAGA++CGE T
Sbjct: 261 ASQGYIYIRAEYPLAIDRLKIAIAQAEEAGVLGDNILGTGFNFKIELKYGAGAFVCGEGT 320

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EGK+G+PR+K    +  GL+  PT+VNNVE+   VP I+ +GA W++ +G E++
Sbjct: 321 ALINSIEGKRGEPRMKTFSSSKHGLWQAPTSVNNVETFGNVPAIINKGADWFASYGTEDS 380

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F++ G VN    VE  M  T  E++ +  GGI  G +   AV  GG S  C+ A 
Sbjct: 381 KGTKVFALGGKVNNVGLVEVPMGTTLREIVYEIGGGIPNGKE-FKAVQTGGPSGGCISAR 439

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D+  L  +GS +G+  ++V+D +  ++        F   ESCG+CTPCR G  
Sbjct: 440 DL-DTPIDFKSLASIGSMMGSGGMLVLDETDCMVDISKFFLEFTVDESCGKCTPCRIGNK 498

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++ ++ ++  G   + ++  L +++  I+  ++C LG  A  P+   +  F       +
Sbjct: 499 RLLEMLTKICDGKGTEEDLADLKDLALTIKNTSLCGLGKCAPNPVLSTLDCFYDEYLAHV 558

Query: 417 DQYHRCN 423
               +C 
Sbjct: 559 KD-KKCP 564


>gi|255004355|ref|ZP_05279156.1| NADH dehydrogenase I subunit F [Anaplasma marginale str. Virginia]
          Length = 430

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 262/422 (62%), Positives = 315/422 (74%), Gaps = 2/422 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           +  +D  FTNL G +   L  +  RG WD   +ILE G D II EVK SGLRGRGGAGF 
Sbjct: 1   MKSEDAAFTNLAGRESPYLGAAKKRGAWDGTKRILELGPDKIIQEVKDSGLRGRGGAGFP 60

Query: 62  TGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           TG KWSFMPK     RP YLV+NADESEPGTCKDRDI+R+EPH +IEG +IA FA+G   
Sbjct: 61  TGTKWSFMPKTRPEGRPAYLVINADESEPGTCKDRDIIRYEPHKIIEGILIAGFAMGVTA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L  A+DE Y  GL+G N+   GYD+DI +H GAGAYICGEE+A L
Sbjct: 121 AYIYIRGEFYNEYLVLSQALDEAYKHGLVGKNACSSGYDLDIFIHRGAGAYICGEESAQL 180

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG+KG PRLKPPFPA VGLYGCPTT+NNVE++AVV  I+RRG+ W+S  GR NN GT
Sbjct: 181 ESLEGRKGMPRLKPPFPAAVGLYGCPTTINNVETVAVVADIMRRGSKWFSSLGRPNNTGT 240

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+ GGWDNLLAVIPGGSSVP LP     
Sbjct: 241 KVFCISGHVNKPCNVEEELGIPMRELIEKYAGGVIGGWDNLLAVIPGGSSVPMLPKSVCD 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D LK + SGLGTA +IVMD+STD+++AI R+S FY HESCGQCTPCREGTGWM 
Sbjct: 301 DVLMDFDSLKAVQSGLGTAGLIVMDKSTDLVEAIERISRFYMHESCGQCTPCREGTGWMW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+M++  +   ++ EID L +V+  IEG TICAL DAA WPIQGL ++FR ++E+RI   
Sbjct: 361 RMMKKNGRWNGKRWEIDKLLDVASQIEGHTICALADAAVWPIQGLFRHFRHVVEDRIGNK 420

Query: 420 HR 421
            +
Sbjct: 421 GK 422


>gi|91202657|emb|CAJ72296.1| similar to nuoF subunit of the NADH:ubiquinone oxidoreductase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 552

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 162/422 (38%), Positives = 250/422 (59%), Gaps = 6/422 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +I   N   +  K +S+ + R  +  ++K+L     D +I EVKASGLRGRGGA
Sbjct: 131 FYKKQKKIVLRNCGVIDPKKISEYILRNGYAALEKVLSGMSPDKVIEEVKASGLRGRGGA 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW        D   Y++ N DE +PG   DR ++  +PH++IEG +I  +AIG+
Sbjct: 191 GFPTGKKWESAKNAVGD-EKYVICNGDEGDPGAFMDRAVLEGDPHSVIEGMLICGYAIGS 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IYVR E+    E ++ A+ +  + GLLG N    G+  DI V  GAGA++CGEETA
Sbjct: 250 GKGIIYVREEYPIAVEHVKIAIGDARSLGLLGENILGSGFHFDIEVKMGAGAFVCGEETA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE++A +P I+  GA ++S  G E+++
Sbjct: 310 LIASIEGERGMPRPRPPFPAVSGLWGKPTNINNVETLANIPVIILEGAKYFSAIGTESSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M  T  EL+ +  GGI        A   GG S  C+P   
Sbjct: 370 GTKIFALAGSVNNTGLVEVPMGTTLRELVFEIGGGIP-RRRQFKAAQMGGPSGGCVPEQY 428

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ +KE+G+ +G+  +I+MD +T +++       F ++ESCG+CTPCR GT  
Sbjct: 429 L-DTPIDYESVKEVGAIMGSGGLIIMDETTSMVEIARYFMEFCQNESCGKCTPCRVGTKR 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+  G  ++ +I LL E+++     ++C LG  +A P+   ++ F+   EE I 
Sbjct: 488 MLEILTRIANGEGEREDIGLLEELAEATRTSSLCGLGQTSANPVVSTLQYFKNEYEENIA 547

Query: 418 QY 419
           + 
Sbjct: 548 KK 549


>gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 595

 Score =  498 bits (1283), Expect = e-139,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 232/426 (54%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +    ++ + K+L E   D +I  +  SGLRGRGG 
Sbjct: 109 FYKKQHRIALRNCGVINPENIDEYIGTRGYEALGKVLTEMTPDDVIQVLLDSGLRGRGGG 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW       +D   Y+  NADE +PG   DR ++  +PH ++E   IA +AIGA
Sbjct: 169 GFPTGLKWKLAKGNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIGA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +    GLLG+N     +  D+ +  GAGA++CGEETA
Sbjct: 228 TQGYIYVRAEYPIAVARLEIAIKQAREYGLLGNNIFGTDFSFDVGLRLGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+  G+ W++  G E ++
Sbjct: 288 LMTSIEGNRGEPRPRPPFPAQKGLFQKPTILNNVETYANIPQIILNGSEWFASMGTEKSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +     VE  M  T  E++E+  GGI  G     A   GG S  C+P   
Sbjct: 348 GTKVFALGGKIKNTGLVEIPMGTTLREVVEQIGGGIPNG-KKFKAAQTGGPSGGCIPVEH 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR GT  
Sbjct: 407 -FDIPIDYDNLISIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTKR 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++ KG     ++D L E+   I+  ++C LG  A  P+   ++ FR      + 
Sbjct: 466 MLEILEKITKGNGTLEDLDKLEELCYYIKDNSLCGLGQTAPNPVLSTLRYFRDEYVAHVV 525

Query: 418 QYHRCN 423
              +C 
Sbjct: 526 D-KKCP 530


>gi|225572064|ref|ZP_03780928.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040499|gb|EEG50745.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
          Length = 584

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
            L+ Q R+   N   +  + + + +++G ++   K++    +D +I  VK SGLRGRGGA
Sbjct: 99  FLSQQRRVVLRNCGLINPEKIDEYIAKGGYEAAKKVITTMTQDEVIEVVKVSGLRGRGGA 158

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW+ + K  +    Y+V NADE +PG   DR ++  +PH+L+EG +I  FA GA
Sbjct: 159 GFPTWFKWNAI-KSNAGAQKYMVCNADEGDPGAFMDRSVLEGDPHSLLEGMIIGGFAAGA 217

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
               IY R E+      L+ A+++    G LG N     +  DI +  GAGA++CGEETA
Sbjct: 218 TEGVIYCRAEYPLAIARLEIAMEQAREKGFLGKNLFGTDFSFDIRIKAGAGAFVCGEETA 277

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PRLKPPFPA  G +  PT +NNVE+ A VP I   G   ++  G   ++
Sbjct: 278 LIASLEGERGMPRLKPPFPAAKGYWKLPTNINNVETYANVPWIFANGGEAFAAMGTAQSK 337

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M +   E+I    GGI+    N  AV  GG S  C+PA Q
Sbjct: 338 GTKVFALAGKIKKGGLVEVPMGLPLKEVIYGIGGGIKND-KNFKAVQMGGPSGGCIPA-Q 395

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + Y+ + + G+ +G+  +IVMD +T ++        F K ESCG+C  CR GT  
Sbjct: 396 LIDTPVTYEDINKTGAIVGSGGMIVMDENTCMVDMARYFLDFTKKESCGKCNYCRIGTKR 455

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  +  +I+LL E++  I+   +C LG  A  P+   I+ FR   E+ I 
Sbjct: 456 MLEILERITRGEGKDGDIELLEELAGKIKDGAMCGLGQTAPNPVLTTIRYFRNEYEDHIY 515

Query: 418 QYHRCN 423
             H C 
Sbjct: 516 N-HTCT 520


>gi|302879336|ref|YP_003847900.1| NADH-quinone oxidoreductase, F subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582125|gb|ADL56136.1| NADH-quinone oxidoreductase, F subunit [Gallionella
           capsiferriformans ES-2]
          Length = 421

 Score =  498 bits (1282), Expect = e-139,   Method: Composition-based stats.
 Identities = 210/416 (50%), Positives = 270/416 (64%), Gaps = 7/416 (1%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           T +   Q  +L + +  G +  + KIL +    D II EVK S LRGRGGAGF TG+KWS
Sbjct: 8   TTMDFDQPWTLENYLKVGGYQALRKILTEQTSPDAIIAEVKLSALRGRGGAGFPTGLKWS 67

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+  +    Y+V N+DE EPGTCKD DIM + PH LIEG  IA++ +     + Y+ G
Sbjct: 68  FMPRSFAG-DKYIVCNSDEGEPGTCKDWDIMLYNPHLLIEGMAIAAYTMNVKTGYNYIHG 126

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     E ++ A +   A+G LG N   LG+  D+  H G GAYICGEETALLES+EGKK
Sbjct: 127 EIFEAYERMEEACELARAAGFLGDNIMGLGFSFDLHNHLGYGAYICGEETALLESIEGKK 186

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ GLYG PTT+NN E+ A +P I+  G   +   G+ NN GTKLFS+SG
Sbjct: 187 GQPRFKPPFPASFGLYGKPTTINNTETFASIPYIINNGGKAFLELGKPNNGGTKLFSVSG 246

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HVN P   E  M   F +L+E   G        L AVIPGGSS+P L    M    MDYD
Sbjct: 247 HVNNPGNFEVPMGTPFAKLLEMAGG--VRNGHKLKAVIPGGSSMPVLTGEVMMDLTMDYD 304

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +++ GSGLG+ AVIVMD +  +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R+ 
Sbjct: 305 SIQKAGSGLGSGAVIVMDETVCMVRALERLSYFYHEESCGQCTPCREGTGWLYRIVHRIE 364

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            G  +  ++DLL  + +NI GRTICALG+AA WP+QG++KNFR   E  I ++ RC
Sbjct: 365 HGQGRPEDLDLLLSIGENIAGRTICALGEAAVWPVQGMLKNFRAEFEYHI-EHKRC 419


>gi|220934167|ref|YP_002513066.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995477|gb|ACL72079.1| NADH-quinone oxidoreductase, F subunit [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 425

 Score =  497 bits (1281), Expect = e-139,   Method: Composition-based stats.
 Identities = 217/417 (52%), Positives = 277/417 (66%), Gaps = 8/417 (1%)

Query: 7   RI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTG 63
           RI FT L   +  +L   +  G +    KIL  +  ++ +I EVK S LRGRGGAGF TG
Sbjct: 3   RICFTTLQFDEPWTLESYLKVGGYQAWKKILTEKMSQEDVIEEVKKSNLRGRGGAGFPTG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSFMP+       Y+V N+DESEPGTCKDRDI+R  PH L+EG  I  +AIGA   + 
Sbjct: 63  LKWSFMPRNAPG-QKYIVCNSDESEPGTCKDRDILRFNPHALVEGMAIGGYAIGATVGYN 121

Query: 124 YVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           Y+RGEF+ E  +    AV E Y  G LG +    G D D+    GAGAYICGEETALLES
Sbjct: 122 YMRGEFMDEPYQRFAQAVREAYEQGFLGKDILGSGVDFDLYPTLGAGAYICGEETALLES 181

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPAN GLYG PTT+NN ES++ +P+I+R G  W++  G   + G KL
Sbjct: 182 LEGKKGQPRFKPPFPANFGLYGRPTTINNTESLSSIPSIIREGGDWFAALGIPKSGGEKL 241

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+SGHVN P   E  +   F +L+E   G + G    L AVIPGGSSVP +P   M  A
Sbjct: 242 FSVSGHVNKPGNFEIPLGTPFKDLLEMAGGVLGG--RKLKAVIPGGSSVPVVPGDVMLTA 299

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +TD+++A+ R+S FY  ESCGQCTPCREGTGW+ R+
Sbjct: 300 NMDYDSIAKAGSMLGSGAVIVMDETTDMVRALQRISRFYFSESCGQCTPCREGTGWLYRM 359

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + R+V+G  +  +++ L +V+  IEGRTICALGDAAA P++  +K+FR   E  I  
Sbjct: 360 LTRIVEGKGRPEDLERLDDVASKIEGRTICALGDAAAMPVRSFVKHFRHEFEYYIQH 416


>gi|169831497|ref|YP_001717479.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638341|gb|ACA59847.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 572

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +   S+ + + R  +  + ++L    R+ ++ E+K SGLRGRGGA
Sbjct: 136 FFNRQKRIVLRNCGIIDPLSIEEYIGRDGYTALARVLNGMTREQVVEEIKKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  +   D P Y+V N DE +PG   DR ++  +PH+++EG  I  +A+GA
Sbjct: 196 GFPTGLKWQFTLQAE-DEPKYVVCNGDEGDPGAFMDRSVLEGDPHSVLEGMAIGGYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+    ++  AA+      GLLG++    G+  D+ +  GAGA++CGEETA
Sbjct: 255 SKGYAYIRAEYPLAIKNFGAAIKSAREMGLLGTDILDSGFSFDVEIRVGAGAFVCGEETA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ GK+G+PR +PPFPA  GL+  PT +NNVE+ A +  I+ RG  WY+G G E ++
Sbjct: 315 LLHSIAGKRGEPRPRPPFPAQCGLFDKPTVINNVETWANIAPIILRGGDWYAGIGTEKSK 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  +  T  E++    GG++    +L A+  GG S   +PA  
Sbjct: 375 GTKVFALAGKIVNTGLVEVPLGTTLREVVYDIGGGMK-NGKSLKAIQSGGPSGGAIPAEY 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  + S +G+  +IV+D  + ++        F + ESCG+CTPCR GT  
Sbjct: 434 I-DTPIDYEALAALDSIMGSGGMIVLDEDSCMVDVARFFMDFVQDESCGKCTPCRIGTRR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ RL +G A K +++LL E++  ++   +C LG  A  P+    +++R   +    
Sbjct: 493 MLEILTRLTQGRATKEDVELLIELANVVKKTALCGLGQTAGNPVLSTTRHYRHEYDRHAV 552

Query: 418 QYHRCN 423
           +  +C 
Sbjct: 553 E-KQCP 557


>gi|73982779|ref|XP_864317.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 5 [Canis familiaris]
          Length = 424

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 252/421 (59%), Positives = 301/421 (71%), Gaps = 41/421 (9%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 215 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH                               
Sbjct: 275 LFNISGHVNHPCTVEEEMSVPLKELIEKH------------------------------- 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                       +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +
Sbjct: 304 ---------AAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNK 354

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++ 
Sbjct: 355 VMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFA 414

Query: 421 R 421
           +
Sbjct: 415 Q 415


>gi|282895630|ref|ZP_06303755.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Raphidiopsis brookii D9]
 gi|281199324|gb|EFA74189.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Raphidiopsis brookii D9]
          Length = 533

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 150/421 (35%), Positives = 242/421 (57%), Gaps = 6/421 (1%)

Query: 1   MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T Q   +  N   +  + +   ++   +  + ++L E     ++  +  SGLRGRGGA
Sbjct: 116 FFTKQLPIVLENSGRVDPERIQSYIAANGYQALYQVLREMKPTEVVEVITKSGLRGRGGA 175

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW  + K  S    +++ NADE +PG   DR ++  +PH ++EG  IA+++IGA
Sbjct: 176 GYPTGLKWGTVAKS-SGAKKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYSIGA 234

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + L+ A+ +    G+LG+N  +  +D  I +  GAGAY+CGEETA
Sbjct: 235 NQGYIYVRAEYPIAIKRLETAIRQAQRLGVLGTNIFESPFDFKIEIRIGAGAYVCGEETA 294

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A +  I+R GA W++  G E ++
Sbjct: 295 LMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPIIRNGAEWFANIGTEKSK 354

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M  T  E++E+  GGI  G     AV  GG S  C+PA  
Sbjct: 355 GTKVFALAGKIRNTGLIEVPMGTTLGEIVEQMGGGIPDGG-MAKAVQTGGPSGGCIPASA 413

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+ L  +GS +G+  +IVMD+ST+++        F   ESCG+C PCR GT  
Sbjct: 414 -FTTPVDYESLSALGSMMGSGGMIVMDQSTNMVDVARFFMEFCMDESCGKCIPCRVGTVQ 472

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ R+ KG   + ++ LL E+   ++  ++C LG +A  P+   ++ FR      I 
Sbjct: 473 LHDLLTRISKGKGTQNDLHLLEELCDMVKYTSLCGLGQSAPNPVFSTLRYFREEYLALIK 532

Query: 418 Q 418
           Q
Sbjct: 533 Q 533


>gi|251771122|gb|EES51706.1| NADH dehydrogenase, subunit F [Leptospirillum ferrodiazotrophum]
          Length = 1059

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 159/425 (37%), Positives = 242/425 (56%), Gaps = 8/425 (1%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59
              Q++I +   G +   S+ D ++   +  ++K+L     + +I  V  SGLRGRGGAG
Sbjct: 117 FRKQNKIVSRRCGVIDPSSIDDYLATNGYKALEKVLGGMTPEQVIEVVTISGLRGRGGAG 176

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-A 118
           F TG+KW F  +   D   Y+V NADE +PG   DR ++  +PH+++EG  IA+FAIG A
Sbjct: 177 FPTGLKWKFTLQSQGD-EKYVVCNADEGDPGAFMDRSVLEGDPHSVLEGMTIAAFAIGHA 235

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+    + L  A+ +    G LG+N        DI V  GAGAY+CGEETA
Sbjct: 236 KKGYIYCRAEYPHAIKLLNRAIGQARERGYLGNNILGTSLSFDIEVKEGAGAYVCGEETA 295

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL SL G +G P  KPPFPA  G++G PT +NNVE++A +P IL  G  WY+ FG E  +
Sbjct: 296 LLASLMGDRGMPWPKPPFPAQSGVWGKPTVINNVETLANIPHILLGGGEWYASFGTEKTK 355

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G +     +E +   T  E++ +  GG+ G      A   GG S  C+P   
Sbjct: 356 GTKTFALTGKIKRTGLIEVNAGTTLKEIVYEIAGGMSGT-KKFKAAQLGGPSGGCIPGS- 413

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D++ L   G+ +G+  +IV+D +  I+        F K ESCG+CTPCR+GT  
Sbjct: 414 LIETPIDFESLISAGAIMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKV 473

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  + +++D L  +S  ++  ++C LG AA  P+   I+ FR   E+ I 
Sbjct: 474 MLDMIERISEGRGEMKDLDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIK 533

Query: 418 QYHRC 422
           +  +C
Sbjct: 534 R-KKC 537


>gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 639

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 240/426 (56%), Gaps = 8/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + + + ++ G + ++ K   E   D II E+K SGLRGRGGA
Sbjct: 146 FFRYQKRLVLRNSGIINPEDIEEYIAVGGYKSLFKAFKEMNPDEIIEEIKKSGLRGRGGA 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  SD   Y++ NADE +PG   +R+ M  +PH +IEG +I  + IGA
Sbjct: 206 GFPTGLKWEFAKKEKSD-VKYVICNADEGDPGAYMNRNEMESDPHMIIEGMIICGYTIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +   IYVR E+    E LQ A+D+  + G LG +    G+D DI +  GAGA++CGEETA
Sbjct: 265 NEGIIYVRAEYPLAIERLQKAIDDARSLGFLGKDILGTGFDFDITIVKGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK G+P+ +PPFPA  GL+G PT +NNVE+ + +P I+ +G  W+S FG E + 
Sbjct: 325 LIASIEGKAGRPKPRPPFPAQKGLWGKPTNINNVETWSNIPIIVEKGGDWFSKFGTEKST 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G V     VE  +     ++I             + AV  GG S  C+P+  
Sbjct: 385 GTKVFSLVGKVENVGLVEVELGTPVRKIIYDIG--GGTKKGKIKAVQTGGPSGGCIPSK- 441

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L E+GS +G+  V+VMD  T ++        F   ESCG+C PCREG   
Sbjct: 442 LFDTPVDYEHLAEVGSIMGSGGVVVMDEDTCMVDTAKFFLDFSVDESCGKCVPCREGLTH 501

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  +++ + KG A   +++ L E+S+ ++  ++C LG  A  P+   ++ F     E + 
Sbjct: 502 MYEILDNITKGKASIEDVETLKELSETVKTTSLCGLGQTAPNPVLTTLEYFYEEYIEHVV 561

Query: 418 QYHRCN 423
              RC 
Sbjct: 562 N-KRCP 566


>gi|291280352|ref|YP_003497187.1| NADH-quinone oxidoreductase subunit F [Deferribacter desulfuricans
           SSM1]
 gi|290755054|dbj|BAI81431.1| NADH-quinone oxidoreductase, F subunit [Deferribacter desulfuricans
           SSM1]
          Length = 596

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 242/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  +   +  + + D ++ G ++ + K+L E   + +I EVK SGLRGRGG 
Sbjct: 112 FYKLQKRYVLADCGKVDPEDIDDYIAHGGYEAIKKVLKEMTPEEVIEEVKKSGLRGRGGG 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW+F      D   YL+ NADE +PG   DR I+   PH +IEG +IA++AIG 
Sbjct: 172 GFPTGLKWTFCRASKGD-LKYLICNADEGDPGAFMDRSIIEGNPHVVIEGMLIAAYAIGC 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+    + ++ A+      G LG N     ++  + +  GAGA++CGEETA
Sbjct: 231 KEGYIYCRAEYPLAIKRVKKALKIAEERGFLGKNILGTDFEFHLHLKEGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G P+ VNNVE+ A +P I+  GA WY+  G E ++
Sbjct: 291 LIASIEGERGMPRPRPPFPAVKGLWGKPSNVNNVETFANLPLIINNGADWYASIGTEKSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++SG V     +E  M +T  +L+    GGI      + AV  GG S  CLP   
Sbjct: 351 GTKIFALSGKVKSTGLIEVPMGVTVRQLVFDVGGGIPKKRK-IKAVQLGGPSGGCLPES- 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   G+ +G+  V+VMD +  ++        F + ESCG+C PCR GT  
Sbjct: 409 LLDTPIDYDSLIAAGAMMGSGGVVVMDETNCMVNVAKFFLTFTQRESCGKCIPCRIGTKT 468

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+  G  ++ +I+LL  ++ +I+  ++C LG  A  P+   IK FR   E  I 
Sbjct: 469 MLDILERICAGEGREGDIELLESLAMDIKTASLCGLGQTAPNPVLTTIKYFRHEYEAHIK 528

Query: 418 QYHRCN 423
              +C 
Sbjct: 529 D-RKCP 533


>gi|91200210|emb|CAJ73254.1| strongly similar to proton-translocating NADH dehydrogenase I, 51
           kDa subunit (NuoF) [Candidatus Kuenenia stuttgartiensis]
          Length = 552

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 162/422 (38%), Positives = 250/422 (59%), Gaps = 6/422 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +I   N   +  K +S+ + R  +  ++K+L     D +I EVKASGLRGRGGA
Sbjct: 131 FYKKQKKIVLRNCGVIDPKKISEYILRNGYVALEKVLSGMSPDKVIEEVKASGLRGRGGA 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW        D   Y++ N DE +PG   DR ++  +PH++IEG +I  +AIG+
Sbjct: 191 GFPTGKKWESAKNAVGD-EKYVICNGDEGDPGAFMDRAVLEGDPHSVIEGMLICGYAIGS 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IYVR E+    E ++ A+ +  + GLLG N    G+  DI V  GAGA++CGEETA
Sbjct: 250 GKGIIYVREEYPIAVEHVKIAIGDARSLGLLGENILGSGFHFDIEVKMGAGAFVCGEETA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE++A +P I+  GA ++S  G E+++
Sbjct: 310 LIASIEGERGMPRPRPPFPAVSGLWGKPTNINNVETLANIPVIILEGAKYFSAIGTESSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M  T  EL+ +  GGI        A   GG S  C+P   
Sbjct: 370 GTKIFALAGSVNNTGLVEVPMGTTLRELVFEIGGGIP-RRRQFKAAQMGGPSGGCVPEQY 428

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ +KE+G+ +G+  +I+MD +T +++       F ++ESCG+CTPCR GT  
Sbjct: 429 L-DTPIDYESVKEVGAIMGSGGLIIMDETTSMVEIARYFMEFCQNESCGKCTPCRVGTKR 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+  G  ++ +I LL E+++     ++C LG  +A P+   ++ F+   EE I 
Sbjct: 488 MLEILTRIANGEGEREDIGLLEELAEATRTSSLCGLGQTSANPVVSTLQYFKNEYEENIA 547

Query: 418 QY 419
           + 
Sbjct: 548 KK 549


>gi|325960237|ref|YP_004291703.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
 gi|325331669|gb|ADZ10731.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
          Length = 619

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 161/423 (38%), Positives = 246/423 (58%), Gaps = 6/423 (1%)

Query: 2   LTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  Q  RI  N   +   ++   ++RG +  ++  L+   + +I ++K+SGLRGRGGAGF
Sbjct: 130 MKPQVRRILRNCGLIDPSNIKHYIARGGYSGLNSALKTKPEKVIEQMKSSGLRGRGGAGF 189

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T MKW F     S    YL+ NADE +PG   +R ++  +PH+++EG VIAS+AIG   
Sbjct: 190 PTWMKWQFCVDFDS-VEKYLICNADEGDPGAFMNRSLLESDPHSVLEGIVIASYAIGVKE 248

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY R E+    E L+ A+ +    GLLG N  + G+D++I +  GAGA++CGEETAL+
Sbjct: 249 AYIYCRAEYPLALERLKQAISQMRDVGLLGKNILETGFDLEIKIKEGAGAFVCGEETALI 308

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK+G PR +PPFP   GL+G PT +NNVE++A V  I++ G   +  FG   ++GT
Sbjct: 309 ASIEGKRGMPRTRPPFPTTAGLWGKPTVINNVETMASVSLIMQTGHEQFKEFGTVESKGT 368

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K FS+ G+V  P  +E  +  T  E+I    GGI     N  AV  GG S  CLP   + 
Sbjct: 369 KTFSLVGNVKKPGLIEVPLGTTLREVIYDIGGGI-NNEGNFKAVQIGGPSGGCLPEEFL- 426

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DYD L   G+ +G+  ++VMD+++ ++        F ++ESCG+C PCR GT  M+
Sbjct: 427 DTKIDYDSLTMAGAIMGSGGLVVMDQNSCMVDVARYFLEFIQNESCGKCVPCRLGTKQML 486

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++  + +G  ++ + DLL E+S+ I   ++C LG  +  PI   +K F       I+  
Sbjct: 487 DILSDITQGKGKQGDNDLLRELSQGIRDGSLCGLGQTSPNPILTTLKYFEDEYISHIED- 545

Query: 420 HRC 422
            RC
Sbjct: 546 KRC 548


>gi|166362850|ref|YP_001655123.1| bidirectional hydrogenase diaphorase subunit [Microcystis
           aeruginosa NIES-843]
 gi|166085223|dbj|BAF99930.1| bidirectional hydrogenase diaphorase subunit [Microcystis
           aeruginosa NIES-843]
          Length = 535

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 148/423 (34%), Positives = 249/423 (58%), Gaps = 7/423 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q +I   N   +    + + ++ G + ++ K L E     ++ E+  SGLRGRGGA
Sbjct: 112 FFSHQVKIVRENSGKIDPDRIEEYIAVGGYQSLYKALYEMTPAQVVEEITQSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K    +  Y++ NADE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 172 GYPTGLKWATVAKQP-GKQKYVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + LQ A+++    GL+GS   +  +D  + +  GAGA++CGEETA
Sbjct: 231 DHGYIYVRAEYPLAIDRLQKAINQAKKFGLMGSQVFESTFDFKVDIRIGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G PR +PP+PA  GL GCPT +NNVES A +  I+R GA+WY+  G  +++
Sbjct: 291 LIHSIEGGRGTPRTRPPYPAQSGLDGCPTLINNVESYANIAAIIREGAAWYANIGTASSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M IT  E++E+  GG+  G   + AV  GG S  C+PA  
Sbjct: 351 GTKIFALTGKIRNNGLIEVPMGITLREIVEEMGGGVPDG--QVKAVQTGGPSGGCIPAN- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L ++GS +G+  ++VMD +T +++       F + ESCG+C PCR GT  
Sbjct: 408 LLDTPVDYESLAKLGSMMGSGGMVVMDDTTSMVEVAKFYMEFCREESCGKCIPCRTGTVQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ +++   A   +++ L  + + ++  ++C LG +A  PI   +K F+      + 
Sbjct: 468 MFELLAKIIARKADIHDLENLEHLCQMVKETSLCGLGQSAPNPILSTLKYFKEEYLALLQ 527

Query: 418 QYH 420
           +  
Sbjct: 528 EIK 530


>gi|300245619|gb|ADJ93867.1| putative aromatic-degrading protein [Clostridia bacterium
           enrichment culture clone BF]
          Length = 634

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 149/421 (35%), Positives = 238/421 (56%), Gaps = 5/421 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           +Q  +  +   +   ++   ++R  +  + K L      ++ EVK S LRGRGGAGF TG
Sbjct: 140 EQKVVLADCGLIDPDNIDHYLARDGYAALAKALTGKPAAVVAEVKDSKLRGRGGAGFPTG 199

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW       +  P Y++ NADE +PG   DR ++   PH ++EG ++A++A+GA+  +I
Sbjct: 200 IKWETCM-NAAGSPKYVICNADEGDPGAFVDRALLESNPHQMLEGLILAAYAVGANEGYI 258

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+      L  A+++    GLLG +     +++DI V  G+GA++CGEETAL+ S+
Sbjct: 259 YVRAEYPLAITRLHTAIEQAREKGLLGESILGSDFNLDITVFQGSGAFVCGEETALIASI 318

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG  G P  +PPFPA  GL G PT +NNV++++ +P I+R GA W+   G   + GT +F
Sbjct: 319 EGNAGIPTHRPPFPAVSGLRGKPTIINNVKTLSYIPNIIRNGADWFKSIGTPGSPGTAVF 378

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           +++G V      E  M  T   L+     GI+       AV  GG S  CLP   +    
Sbjct: 379 ALAGKVVGTGLAEVPMGTTIRTLVYDVGNGIKND-KQFKAVQIGGPSGGCLPESAI-DLP 436

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+D LKE G+ +G+  ++V+D    +++       F +HESCG+CT CR GT  M+ ++
Sbjct: 437 IDFDSLKEAGAMMGSGGMVVLDEDDCMVEIARFFLEFTQHESCGKCTFCRLGTKQMLDIL 496

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             + +G  +  +IDLL+E++++I+  ++CALG  A  P+   I+ FR   E  I +  RC
Sbjct: 497 TDITQGRGKPEDIDLLWELAEDIKIGSLCALGKTAPNPVLTTIRFFRNEYEAHIQE-GRC 555

Query: 423 N 423
            
Sbjct: 556 P 556


>gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
 gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
          Length = 636

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 169/426 (39%), Positives = 247/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLY-GLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R+   L   +  KSL D ++ G +  + K L +   + +I EVK + LRGRGGA
Sbjct: 131 FYKNQQRLILGLNTKIDPKSLEDYLAVGGYQAMAKALLKMTPEQVIGEVKQAKLRGRGGA 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF +G KW F      D   Y+VVN DE +PG   DR +M   P T++EG +I ++AIGA
Sbjct: 191 GFPSGTKWEFARNAPGD-QKYVVVNCDEGDPGAYMDRSLMEGNPFTVLEGLLIGAYAIGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    ++L  A+ +    G LG N    G+D  + VH GAGA+ICGEET+
Sbjct: 250 SEGYIYVRQEYPLAVDNLTVAIKKAEEHGFLGKNILGSGFDFTVKVHRGAGAFICGEETS 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+SLEGK G+P+ +PPFPA  GL+G PT +NNVE+ A +P I+ +GA ++S  G E+++
Sbjct: 310 LLQSLEGKPGEPKPRPPFPAIKGLWGKPTNINNVETWANIPVIINQGAEYFSSIGTESSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G VN    VE  M +   ++I K  GG+        AV  GG S  C+P   
Sbjct: 370 GTKIFSLVGKVNNTGLVEVPMGMPLRDIIFKIGGGVP-NGKKFKAVQTGGPSGGCIPEEY 428

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L +MG+ +G+  +IVMD  T ++        F   ESCG+C PCREG   
Sbjct: 429 L-DVKVDFDELMKMGAMMGSGGMIVMDEDTCLVDIARYFLEFLSDESCGKCVPCREGIRQ 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M++VM  + +G  ++ +I+LL  ++   +G  +CALG  A  P+   +K FR   E  I 
Sbjct: 488 MLKVMTAITQGKGKEGDIELLENMAMATQGAALCALGKTAPNPVLSTLKYFRHEYEAHIK 547

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 548 E-KRCP 552


>gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
 gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 159/426 (37%), Positives = 237/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   L  +++ + ++R  ++ + ++L       +++ VK SGLRGRGG 
Sbjct: 111 FYKKQMRIALRNCGFLDPENVQEYIARDGYEALGRVLSTMKPADVVDTVKKSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K  +D   Y++ NADE +PG   DR I+  +PH+++E   I  +AIGA
Sbjct: 171 GFPTGLKWEIASKYGAD-QKYVICNADEGDPGAFMDRSILEGDPHSVVEAMAICGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    E LQ A+      GLLG +    G+D DI + +GAGA++CGEETA
Sbjct: 230 SKGMVYIRAEYPLAVERLQKAIVAAREIGLLGKDILGTGFDFDIELRYGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++SLEG +G+P  KPPFPA  G +G P+ VNNVE+ A VP I+ +GA W++  G E ++
Sbjct: 290 LIQSLEGNRGEPTSKPPFPAEKGFWGKPSNVNNVETFANVPPIILKGADWFASIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M  T  E+I    GGIR       AV  GG S  CL    
Sbjct: 350 GTKVFALAGKVNNVGLVEVPMGTTLREVIYDIGGGIR-DGKAFKAVQTGGPSGGCLTQKH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 409 L-DTPIDFDNLIAAGSMMGSGGMIVMDEDNCMVSVAKFYLEFTVEESCGKCTPCRVGNKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++E++ +G   ++++  L E++  I+   +C LG  A  P+   + NF       + 
Sbjct: 468 MHEILEKITQGKGTEKDLARLRELALVIKDTALCGLGQTAPNPVLSTLDNFGDEYLAHVR 527

Query: 418 QYHRCN 423
             HRC 
Sbjct: 528 D-HRCP 532


>gi|156778103|gb|ABU95426.1| NADH dehydrogenase 51 kDa subunit [Sawyeria marylandensis]
          Length = 440

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 247/424 (58%), Positives = 311/424 (73%), Gaps = 2/424 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLY      L  +  RG W+N + ++ KG DWII+++K SGLRGRGGAGFS
Sbjct: 18  LKDSDRIFTNLYKDFDDFLDGAKKRGDWNNTENLITKGSDWIIDQLKKSGLRGRGGAGFS 77

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+K+SFMPK  + +PHYLV+N DESEP TCKDR+I+RHEPH LIEG ++  +++ A  A
Sbjct: 78  TGLKYSFMPKKDN-KPHYLVINGDESEPQTCKDREIIRHEPHKLIEGALVCGYSLNAKAA 136

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVRGEF  E + LQ A+DE Y SGL+G N+   GYD D+ VH GAGAY+ GEETALLE
Sbjct: 137 YIYVRGEFYNEVKVLQKAIDEAYKSGLIGKNACGTGYDFDVFVHRGAGAYVSGEETALLE 196

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PR+KPPFPA  GL+G PT V+NVE+++VVPTIL+RGA W+S  GR NN GTK
Sbjct: 197 SLEGKSGKPRIKPPFPAQAGLWGFPTMVSNVETVSVVPTILKRGADWFSSLGRPNNTGTK 256

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ ISGHV YPCTVEE MSI    LIEKHCGG+RGGWDNLLAVIPGGSS   +P      
Sbjct: 257 LYCISGHVKYPCTVEEEMSIPLKTLIEKHCGGVRGGWDNLLAVIPGGSSTAPIPKKVCDS 316

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L  + S  GTA+++V+D+STDI+KA  R + FYK ESCGQCTPCREG  W+  
Sbjct: 317 VLMDFDSLASVNSSFGTASILVLDKSTDIVKAFARQAHFYKEESCGQCTPCREGYAWITD 376

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++   KG  +  +ID L +  ++I GR+ICAL D A   I GLI NFRP +E +  + +
Sbjct: 377 MLDSFQKGEGRLEDIDFLMDTCQHISGRSICALADGACQGIIGLINNFRPYLEAKCQKKN 436

Query: 421 RCNF 424
           +  F
Sbjct: 437 KHEF 440


>gi|319789711|ref|YP_004151344.1| NADH-quinone oxidoreductase, F subunit [Thermovibrio ammonificans
           HB-1]
 gi|317114213|gb|ADU96703.1| NADH-quinone oxidoreductase, F subunit [Thermovibrio ammonificans
           HB-1]
          Length = 421

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 184/420 (43%), Positives = 254/420 (60%), Gaps = 7/420 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+      ++   +  G +  + K L E   D ++ EVK SGLRGRGGAGF TGMKW
Sbjct: 5   LLRNVDKENSHTIEVYLKGGGYSALRKALKEMSPDDVVEEVKLSGLRGRGGAGFPTGMKW 64

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F      + P + V NADE EP T KDR I+  +PH LIEG +I ++A G    +IY+R
Sbjct: 65  EFAAADLKE-PKFFVCNADEGEPCTFKDRVIIEKDPHALIEGMLIGAYATGCRYGYIYLR 123

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+   ++ L+ A+ E Y  G LG N     +  D+ VH GAGAYICGEETAL+ESLEGK
Sbjct: 124 GEYPIGKKILERAIAEAYEKGFLGENILGTDFSFDLYVHSGAGAYICGEETALIESLEGK 183

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G+PR+KPPFP N G    PT VNNVE++A VP I+ RG  WYS  G  +  G KLF +S
Sbjct: 184 RGEPRIKPPFPVNAGYLWKPTVVNNVETLANVPLIIERGGKWYSQIGSPDCPGPKLFPVS 243

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  M     E+I +H GGI      L AV PGG+S   L A ++    MD+
Sbjct: 244 GKVKRPGVYELPMGTPLREIIFEHAGGIVKDRK-LKAVFPGGASSSLLTADEI-DVPMDF 301

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
             L + G+ LG+ A++V+D +  ++KA  RL  F++HESCG+CTPCREGT W++R+M R+
Sbjct: 302 PSLAKAGTMLGSGAIMVLDETDCVVKAALRLIEFFRHESCGKCTPCREGTDWLVRIMRRI 361

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            +G+  + ++D +  VS+ +E  + C LG AA  P+   ++ FR    E I +  RC F+
Sbjct: 362 EEGLGTEEDLDTILSVSETME-NSFCGLGMAAHNPVASSVRKFRDEFLEHI-KLGRCPFR 419


>gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter
           bemidjiensis Bem]
 gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative
           [Geobacter bemidjiensis Bem]
          Length = 636

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 169/426 (39%), Positives = 247/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLY-GLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R+   L   +  KSL D ++ G +  + K L +   + +I EVK + LRGRGGA
Sbjct: 131 FYKNQQRLILGLNTKIDPKSLEDYLAVGGYQAMAKALLQMTPEEVIGEVKGAKLRGRGGA 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF +G KW F      D   Y+VVN DE +PG   DR +M   P T++EG +I ++AIGA
Sbjct: 191 GFPSGTKWEFARNAPGD-QKYVVVNCDEGDPGAYMDRSLMEGNPFTVLEGLLIGAYAIGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    ++L  A+ +    G LG N    G+D  + VH GAGA+ICGEET+
Sbjct: 250 SEGYIYVRQEYPLAVDNLTVAIKKAEEHGFLGKNILGSGFDFTVKVHRGAGAFICGEETS 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+SLEGK G+P+ +PPFPA  GL+G PT +NNVE+ A +P I+ +GA ++S  G E+++
Sbjct: 310 LLQSLEGKPGEPKPRPPFPAVRGLWGKPTNINNVETWANIPVIINKGADYFSSIGTESSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G VN    VE  M +   ++I K  GG+        AV  GG S  C+P   
Sbjct: 370 GTKIFSLVGKVNNTGLVEVPMGMPLRDIIFKIGGGVP-NGKKFKAVQTGGPSGGCIPEEY 428

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L +MG+ +G+  +IVMD  T ++        F   ESCG+C PCREG   
Sbjct: 429 L-DVKVDFDELMKMGAMMGSGGMIVMDEDTCLVDIARYFLEFLSDESCGKCVPCREGIRQ 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M++VM  + +G  ++ +I+LL  ++   +G  +CALG  A  P+   +K FR   E  I 
Sbjct: 488 MLKVMTAITQGKGKEGDIELLENMAMATQGAALCALGKTAPNPVLSTLKYFRHEYEAHIK 547

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 548 E-KRCP 552


>gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 595

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 249/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R+   N   +    + + +++  +  + K L E   + ++ E+K SGLRGRGG 
Sbjct: 110 FFRNQTRVVLRNCGQINPDDIHEYIAKDGYKALGKALKEMTPNQVVAEIKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K   D   Y++ NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 170 GFPTGLKWELTAKSSGD-TKYVICNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              F+YVR E+    E +  A+++    GLLG N  +  +  DI V  GAGA++CGEETA
Sbjct: 229 RQGFVYVRAEYAIAVERVSHAIEQARELGLLGKNLFETDFAFDIEVRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE++A +P I+  GA W++ FG E +R
Sbjct: 289 LITSIEGNRGEPRPRPPFPAQKGLWGNPTLINNVETLANIPAIILNGAEWFTQFGTERSR 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T   +I    GGI     NL AV  GG S  C+PA  
Sbjct: 349 GTKVFALAGKINNTGLIEVPMGATLRHVIYDIGGGIP-DGKNLKAVQTGGPSGGCIPA-H 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    ++YD L E+GS +G+  +IV+D S  ++        F + ESCG+CTPCR GT  
Sbjct: 407 LLDTPIEYDTLLELGSMMGSGGMIVLDESDCMVDIAKFYLEFTRDESCGKCTPCRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ER+ +G  ++ +I LL E+++ I+  ++C LG +A  P+   ++ F+      + 
Sbjct: 467 LLEILERITEGRGKEDDIPLLQELAEGIKETSLCGLGQSAPNPVLSTLRYFKDEYMAHVR 526

Query: 418 QYHRCN 423
               C 
Sbjct: 527 D-KVCP 531


>gi|300113270|ref|YP_003759845.1| NADH-quinone oxidoreductase subunit F [Nitrosococcus watsonii
           C-113]
 gi|299539207|gb|ADJ27524.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus watsonii
           C-113]
          Length = 427

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 215/425 (50%), Positives = 277/425 (65%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGA 58
           M+      F  L       L   +    ++   +IL++      II+E+K SGLRGRGGA
Sbjct: 1   MIALNQVCFRTLDLDPPWGLESYLKVKGYEVWKRILKEKTPPSKIIDEIKTSGLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFMPK  +    Y+V N+DE EPGT KDRDI+R+ PH LIEG  IA + IGA
Sbjct: 61  GFPTGLKWSFMPKDLAGI-KYIVCNSDEGEPGTFKDRDILRYNPHQLIEGMAIAGYTIGA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y RGEF    E  + A++E Y +GLLG N    G D D+  H GAGAYICGEETA
Sbjct: 120 TVGYNYTRGEFSEPIERFEDALEEAYQAGLLGKNILASGVDFDLYSHPGAGAYICGEETA 179

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGKKG PR KPPFPA  GLYG PTT+NN E++A VP IL +G  W+   G   + 
Sbjct: 180 LLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTETLASVPVILEKGGPWFLKLGTPTSG 239

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+SGHVN P   E  M I+F +L+E   G      + L AVIPGG+SVP +PA  
Sbjct: 240 GTKIFSVSGHVNRPGNYEVPMGISFKDLLELAGGM--RNGNALKAVIPGGTSVPVMPAET 297

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A MDYD L + GS LG  +VI+MD +T +++A+ R+S FY+ ESCGQCTPCREGTGW
Sbjct: 298 IMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYREESCGQCTPCREGTGW 357

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + RV+ R+ +G   + ++D +  V++NI+G TICALGDAAA P+   IK+FR   +  ID
Sbjct: 358 LYRVVHRIEQGQGTQEDLDKVVNVAQNIDGHTICALGDAAAAPVISFIKHFRDEFQYHID 417

Query: 418 QYHRC 422
            + RC
Sbjct: 418 -HKRC 421


>gi|158319965|ref|YP_001512472.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140164|gb|ABW18476.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 635

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 157/424 (37%), Positives = 236/424 (55%), Gaps = 7/424 (1%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
             Q RI   N   +  +S+ + ++   +  + K + E     +I+ VKASGLRGRGG GF
Sbjct: 145 KRQHRIALKNCGVIDPESIDEYLALDGYKALQKAITEMAPQDVIDVVKASGLRGRGGGGF 204

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKW F  K  +D   Y+V NADE +PG   DR I+  +P +++E   IA +AIG+  
Sbjct: 205 PTGMKWEFTAKAAND-KKYVVCNADEGDPGAFMDRSILEGDPQSVLEAMAIAGYAIGSDK 263

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+R E+      L+ A+ +    GLLG       ++ DI +  GAGA++CGEETAL+
Sbjct: 264 GFIYIRAEYPMAVRRLEKAIAQAKEYGLLGQRIMGTEFNFDIEIRLGAGAFVCGEETALI 323

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG++G    KPPFPAN GL+G PT +NNVE+ A V  I+ +GA W+   G E + GT
Sbjct: 324 RSIEGERGMSVQKPPFPANSGLWGKPTLINNVETFANVAQIILKGAEWFKSVGSEKSAGT 383

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F++ G +     VE  M  T  E+I    GGI        AV  GG S  C+P   + 
Sbjct: 384 KVFALGGKITNTGLVEIPMGTTLKEVIYDIGGGIPHN-KKFKAVQTGGPSGGCIPYTHI- 441

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            + +DYD L  +GS +G+  +IVMD    ++        F  HESCG+C+PCR GT  ++
Sbjct: 442 DSPIDYDTLTTIGSMMGSGGMIVMDEDNCMVDVAKFFLEFVSHESCGKCSPCRIGTKRLL 501

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ ++ +G     +++ L ++S +I+   +C LG  A  P+   +K F+   E  + + 
Sbjct: 502 EILTKITEGKGTMEDLENLEKLSHDIKATALCGLGQTAPNPVLSTLKYFKHEYEAHVRE- 560

Query: 420 HRCN 423
            RC 
Sbjct: 561 DRCP 564


>gi|295112090|emb|CBL28840.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Synergistetes bacterium SGP1]
          Length = 628

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 149/414 (35%), Positives = 234/414 (56%), Gaps = 5/414 (1%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
              +    L++ ++RG +  + K L +   + + +E+  SGLRGRGGAGF TG KW  + 
Sbjct: 152 CGKIDAVDLNEYIARGGYAALGKALHDMTPEAVCDEIDRSGLRGRGGAGFPTGKKWKSVL 211

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           +  +   HY+V N DE +PG   D  IM   P+ +IEG  IA++A  +   +IYVR E+ 
Sbjct: 212 RQKAP-KHYVVCNGDEGDPGAFMDCSIMEGAPYRMIEGMTIAAYAARSDEGYIYVRAEYP 270

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
              + L+ A++    +GLLG       +   + ++ GAGA++CGE +AL  S+EG +G P
Sbjct: 271 LAVKRLRTAIERATEAGLLGDGILGTDFSFKLHINQGAGAFVCGEGSALTSSIEGNRGMP 330

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R+KPP     GL+G PT +NNVE+ A VP I++ GA W+ G G E + GTK F+++G+V 
Sbjct: 331 RVKPPRTVEQGLFGKPTVLNNVETYANVPKIVQEGADWFRGIGTEGSPGTKAFALTGNVV 390

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
               +E  M  T  ++I    GGIR       AV  GG S  CL   +     +D+D L+
Sbjct: 391 NTGLIEVPMGTTLRKIIFDIGGGIR-NGKKFKAVQIGGPSGGCLCLDEHLDLPLDFDSLQ 449

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            +G+ +G+  ++VMD  T +++       F + ESCG+C PCREGT  M+ ++ER+V G 
Sbjct: 450 RIGAMIGSGGLVVMDEDTCMVEVARFFMNFTQRESCGKCVPCREGTKRMLEIVERIVGGQ 509

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            +  ++DLL E++  ++   +C LG  AA P+   ++ FR   E  + +  RC 
Sbjct: 510 GRPEDLDLLEELADTVKNTALCGLGKTAANPVTSTLRYFRDEYEAHVSE-KRCP 562


>gi|74317165|ref|YP_314905.1| NADH-quinone oxidoreductase subunit F [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056660|gb|AAZ97100.1| NADH-quinone oxidoreductase, chain F [Thiobacillus denitrificans
           ATCC 25259]
          Length = 426

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 203/410 (49%), Positives = 264/410 (64%), Gaps = 7/410 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              SL+  ++ G +  + +++ +    D II E+K S LRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DPASLATYVANGGYQALRRVVTEAVPGDDIIAEIKTSALRGRGGAGFPTGLKWSFMPRAF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N+DE EPGT KDRDI+R+ PH LIEG  IA + +GA   + Y+ GE     
Sbjct: 79  PG-DKYIVCNSDEGEPGTFKDRDILRYNPHQLIEGMAIAGYVLGARVGYNYIHGEIFEVY 137

Query: 134 ESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  + A++E   +G LG+N     +  D+  HHG GAYICGEETALLES+EGKKGQPR K
Sbjct: 138 QIFERALEEARQAGYLGANLFGTDFCFDLHAHHGYGAYICGEETALLESIEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E++A VP I++ G   +   G+ NN G KLFS+SGHVN P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETLASVPWIVQHGGQAFLELGKPNNGGAKLFSVSGHVNRPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F EL+E   G       +L AVIPGGSS P LP   M    MD+D + + G
Sbjct: 258 NYEVPLGTPFTELLEMAGG--VRDGRSLKAVIPGGSSAPVLPGHIMMETTMDFDSIAKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVIVMD +  +++A+ RLS FY  ESCGQCTPCREGTGWM RV+ R+  G  + 
Sbjct: 316 SMLGSGAVIVMDETVCMVRALERLSYFYYEESCGQCTPCREGTGWMYRVIHRIENGQGRP 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            ++DLL  V+  I G TICALGDAAA P+Q  +K+F    E  I ++ RC
Sbjct: 376 EDMDLLNSVAGQIGGHTICALGDAAAMPVQSFLKHFGHEFEHHI-EHKRC 424


>gi|319779203|ref|YP_004130116.1| NADH-ubiquinone oxidoreductase chain F [Taylorella equigenitalis
           MCE9]
 gi|317109227|gb|ADU91973.1| NADH-ubiquinone oxidoreductase chain F [Taylorella equigenitalis
           MCE9]
          Length = 452

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 215/421 (51%), Positives = 272/421 (64%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
           + +I  +L G     L D + RG ++ + KIL  G  ++ II E+KASGLRGRGGAGF T
Sbjct: 31  KPQILADLDGSN-WHLEDYVKRGGYEAIKKILTTGLKQEDIIAELKASGLRGRGGAGFPT 89

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       Y+V N+DE EPGT KDRDI+R  PH +IEG +I  FA+G    +
Sbjct: 90  GLKWSFMPRAFPG-QKYIVCNSDEGEPGTFKDRDILRFNPHCIIEGMIIGGFAMGVTRGY 148

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE     E  Q A+ E  A+G LGSN     +  D+  HHG GAYICGEETALLES
Sbjct: 149 NYIHGEIFEVYERFQEAIHEARAAGYLGSNILGTDFCFDLEAHHGYGAYICGEETALLES 208

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G  NN GTKL
Sbjct: 209 IEGKKGQPRFKPPFPASFGLYGKPTTINNAETFAAVPWIIRNGGPAYLEVGLPNNGGTKL 268

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FSISG V  P T E  +   F +L+E   G        L AVIPGGSS P LPA  M   
Sbjct: 269 FSISGDVEKPGTYEIPLGTPFSKLLELAGGM--REGRPLKAVIPGGSSSPVLPAEIMMQT 326

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVM+ +  ++K++ RLS FY+ ESCGQCTPCREGTGW+ R+
Sbjct: 327 NMDYDSISKAGSMLGSGAVIVMNDTRCMVKSLLRLSHFYQDESCGQCTPCREGTGWLYRL 386

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+  G  +  ++D L  V+ NI GRTICALGDAAA P++G +K++R      I+   +
Sbjct: 387 VHRIEHGHGKLEDLDQLDRVAGNIMGRTICALGDAAAMPVRGFLKHYRDEFIYHIEN-KK 445

Query: 422 C 422
           C
Sbjct: 446 C 446


>gi|270158109|ref|ZP_06186766.1| NADH-quinone oxidoreductase F subunit [Legionella longbeachae
           D-4968]
 gi|289163626|ref|YP_003453764.1| NADH dehydrogenase I chain F [Legionella longbeachae NSW150]
 gi|269990134|gb|EEZ96388.1| NADH-quinone oxidoreductase F subunit [Legionella longbeachae
           D-4968]
 gi|288856799|emb|CBJ10610.1| NADH dehydrogenase I chain F [Legionella longbeachae NSW150]
          Length = 425

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 212/408 (51%), Positives = 271/408 (66%), Gaps = 6/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  +LS   S G +    KIL++      II+E+K S LRGRGGAGF TG+KWSFM +  
Sbjct: 16  EPWTLSAYESVGGYSAWRKILKEQTSPQHIIDELKTSALRGRGGAGFPTGLKWSFMNRN- 74

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +    Y+V N+DE EPGTCKDRDI+R  PH LIEG  IA + +GA   + Y+RGEF    
Sbjct: 75  NPVQKYVVCNSDEGEPGTCKDRDILRFNPHQLIEGMAIAGYTMGATVGYNYIRGEFWLPY 134

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E  + A+ E YA+GLLG N    G+D D+  H GAGAYICGEETALL SLEGKKGQPR K
Sbjct: 135 EHTEMAIKEAYAAGLLGKNILGSGFDFDLYNHLGAGAYICGEETALLNSLEGKKGQPRFK 194

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPAN GLYG PTT+NN E+ A VP I+ +G  W+   G+ NN G K FS+SGHVN P 
Sbjct: 195 PPFPANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPG 254

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F  L+E   G        + AVIPGG+S+P LP   M G  MDYD +++ G
Sbjct: 255 NFEIPLGTPFKMLVELAGG--VREGRKIKAVIPGGTSMPVLPGDVMMGLDMDYDSIQKAG 312

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           SGLG+ AVI+MD +T ++ A++R++ FY  ESCGQCTPCREGTGWM+R++ R+  G  + 
Sbjct: 313 SGLGSGAVIIMDETTCMVDALYRIAEFYMDESCGQCTPCREGTGWMVRLLHRIKAGHGEP 372

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +++ L  V+ NIEGRTICALG+AAAWP+Q  IK+FR   E  +    
Sbjct: 373 GDVERLVNVANNIEGRTICALGEAAAWPVQSFIKHFRDEFEYFVKNKR 420


>gi|323702077|ref|ZP_08113745.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532959|gb|EGB22830.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 569

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 247/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R    N   +   S+ + ++   +  + K+L E     +++EVK SGLRGRGGA
Sbjct: 135 FFKKQKRNALRNCGLINQTSIEEYIAMDGYKALAKVLQEMTPQQVVDEVKKSGLRGRGGA 194

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKW F+    +D   Y+VVN DE +PG   DR ++  +P+++IE   I  +A+GA
Sbjct: 195 GFPTGMKWQFVLDQKAD-QKYVVVNGDEGDPGAFMDRSVLEDDPYSVIEAMTIGGYAVGA 253

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+ R  +    A+      GLLG+N     +  DI +  GAGA++CGEETA
Sbjct: 254 SKGYAYIRLEYPRAIDHFTKALARAREVGLLGNNILGTDFSFDIEIRVGAGAFVCGEETA 313

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++G+PR +PPFPA  GL+G PT +NNVE+ A +  I+ +G  WY+  G E ++
Sbjct: 314 LLASIEGRRGEPRPRPPFPAVSGLFGKPTLINNVETWANICPIIIKGGDWYATMGTEKSK 373

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  + IT  E++E   GG+ GG     A   GG S  C+PA  
Sbjct: 374 GTKVFTLAGKINNTGLVEVPLGITLREIVEDIGGGVPGG-KAFKAAQTGGPSGGCIPAAY 432

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +I++D  T ++        F + ESCG+CTPCR GT  
Sbjct: 433 L-DTPIDYENLAALGSIVGSGGMIIVDEGTCMVDLAKFYLGFTQDESCGKCTPCRIGTKR 491

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ KG+ ++ +I+LL E++ +I+   +C LG  A  PI   ++ FR   E  + 
Sbjct: 492 MLEILERITKGVGKEEDIELLIELANSIKASALCGLGQTAPNPILSTLRYFRDEYEAHVK 551

Query: 418 QYHRCN 423
               C 
Sbjct: 552 D-KTCP 556


>gi|313672282|ref|YP_004050393.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939038|gb|ADR18230.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 595

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 161/426 (37%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  +   +  + + D ++ G ++ + K+L E   + +I EVK SGLRGRGG 
Sbjct: 111 FYKLQKRYVLKDCGKVDPEDIDDYIAHGGYEAIKKVLKEMTPEQVIEEVKKSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      D   YL+ NADE +PG   DR I+   PH +IEG +IA++AIG 
Sbjct: 171 GFPTGVKWGFCRASKGD-LKYLICNADEGDPGAFMDRSIIEGNPHVVIEGMLIAAYAIGC 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+    + ++ A+      G LG N     ++  + +  GAGA++CGEETA
Sbjct: 230 REGYIYCRAEYPLAIKRVKKALRIAEERGFLGKNILGTDFEFHLHLKEGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT VNNVE+ A +P I+  GA +Y+  G E ++
Sbjct: 290 LIASIEGERGMPRSRPPFPAVRGLWGKPTNVNNVETFANLPLIILDGADFYASMGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++SG V     VE  M IT  +LI    GGI        AV  GG S  CLP   
Sbjct: 350 GTKIFALSGKVKSTGLVEVPMGITVRQLIFDVGGGIPKKRK-FKAVQLGGPSGGCLPES- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   G+ +G+  V+VMD +  ++        F + ESCG+C PCR GT  
Sbjct: 408 LLDTPIDYDSLIAAGAMMGSGGVVVMDETNCMVNVAQFFLTFTQRESCGKCIPCRIGTKT 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+  G  ++ +I+ L +++++I+  ++C LG  A  P+   IK FR   E  I 
Sbjct: 468 MLDILNRITSGEGREGDIENLLDLAQDIKTASLCGLGQTAPNPVITTIKYFRDEYEAHIK 527

Query: 418 QYHRCN 423
              +C 
Sbjct: 528 N-KKCP 532


>gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 596

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 247/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++++ ++R  ++ + K+L       +I EVK SGLRGRGG 
Sbjct: 110 FYKKQMRIALRNCGFIDPENVNEYIARDGYEALGKVLTSMKPQDVIAEVKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    +  +D   Y++ NADE +PG   DR I+  +PH++IE   I  +AIGA
Sbjct: 170 GFPTGLKWEIASRFSAD-QKYVICNADEGDPGAFMDRSILEGDPHSVIEAMAICGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    + LQ A+++    GLLG +    G+D D+ + +GAGA++CGEETA
Sbjct: 229 TKGMVYIRAEYPLAVKRLQKAIEDAREVGLLGKDILGSGFDFDVELRYGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++SLEG +G+P  KPPFPA  G YG P+ VNNVE+ A VP I+ +GA W++  G E ++
Sbjct: 289 LIQSLEGNRGEPVSKPPFPAERGFYGKPSNVNNVETFACVPPIILKGADWFASIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M IT  E+I    GGIR G     AV  GG S  CL    
Sbjct: 349 GTKVFALAGKVNNVGLVEVPMGITLREVIYDIGGGIRDGRK-FKAVQTGGPSGGCLTEKH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L E GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 408 L-DTPIDFDTLLEAGSMMGSGGMIVMDEDNCMVSVAKFYLEFTVEESCGKCTPCRVGNRR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++ +G A + +++ L E++  I+  ++C LG  A  P+   + NF       ++
Sbjct: 467 MLEMLDKICQGKATRDDLNRLRELALIIKDTSLCGLGQTAPNPVLSTLDNFFDEYLAHVE 526

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 527 E-KRCP 531


>gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 596

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + ++++ G ++ + K+L     + +I+E+K SGLRGRGG 
Sbjct: 110 FYKKQMRVALRNCGIIDPEDIEEAIAMGAYEALGKVLTTMTPEQVIDEMKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   + P Y+V NADE +PG   DR IM  +PH+++EG  IA +AIGA
Sbjct: 170 GFPTGLKWEFAYKQK-ETPKYVVCNADEGDPGAFMDRSIMEGDPHSVLEGMAIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +   IYVR E+    + LQ A+ +    GLLG N     +  D+ +  GAGA++CGEETA
Sbjct: 229 NHGVIYVRAEYPLAVKRLQIAIKQAREYGLLGDNIFGTDFSFDVEIRFGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ G++G+PR +PP+PA  GL+  PT +NNVE+ A VP I+  GA W+S  G E ++
Sbjct: 289 LLNSVMGRRGEPRPRPPYPAVKGLWNKPTIINNVETFANVPVIISNGAEWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E+I    GGI        AV  GG S  C+P   
Sbjct: 349 GTKVFALTGKVNRTGLIEVPMGTTLREIIFDIGGGIP-DGKRFKAVQIGGPSGGCIPEEH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   ++DYD L  +G+ +G+  ++VMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 L-DTVIDYDSLISLGAMMGSGGLVVMDEDTCMVNVAKFFLEFIVDESCGKCAPCRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G  +  +ID L +++  I+   +C LG  A   +   ++ FR   E  I+
Sbjct: 467 MLEILDKITSGKGEPEDIDRLEKLATTIKDTALCGLGQTAPNAVLSTLRYFRNEYEAHIN 526

Query: 418 QYHRCN 423
           Q  +C 
Sbjct: 527 Q-KKCP 531


>gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
 gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
          Length = 622

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 156/425 (36%), Positives = 239/425 (56%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + +  +++ G +  ++K L E   + +I  +  S LRGRGGA
Sbjct: 135 FYAKQTRLVLKNCGHIDAEHIGGALAVGAYAGIEKALFEMTPEAVIQTIYDSNLRGRGGA 194

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  +     ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+ A
Sbjct: 195 GFRTGRKWQQVA-SQKEKIRYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMMIAAYAVQA 253

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L+ A+ +  A GLLG N     +   + ++ GAGA++CGE +A
Sbjct: 254 QEGYIYVRAEYPLAIERLKTAISQAEAIGLLGDNILGTNFSFHLHINRGAGAFVCGEGSA 313

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I+  GA W+ G G   + 
Sbjct: 314 LTASIEGKRGMPRVKPPRTVEQGLWARPTVLNNVETYANVPMIVTNGADWFKGIGTPESP 373

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G+V     +E  M IT  E+I    GGI+       AV  GG S  CL   Q
Sbjct: 374 GTKAFALTGNVRNTGLIEVPMGITLREVIYDIGGGIQND-KKFKAVQIGGPSGGCLTEDQ 432

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  + MD+D L ++G+ +G+  +++MD  T +++       F + ESCG+C PCREGT  
Sbjct: 433 L-DSKMDFDSLAKIGAMIGSGGLVIMDEDTCMVEVARFFMSFTQRESCGKCVPCREGTKR 491

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  +  ++D L E++  IE   +C LG +A  P+   +  F     E I+
Sbjct: 492 MLEILERIVAGNGKPSDMDELRELADMIESTALCGLGKSAPKPVISTMNAFEEEYLEHIN 551

Query: 418 QYHRC 422
           +  RC
Sbjct: 552 E-KRC 555


>gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
 gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
          Length = 628

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 234/426 (54%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   L  +++ + ++R  ++ + K L E     +I+E+K SGLRGRGG 
Sbjct: 141 FYAKQQRIALKNCGQLDPENIREYIARDGYEALAKALHEMQPQEVIDEIKKSGLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F     +    Y++ NADE +PG   DR I+  +PH ++E   IA +AIGA
Sbjct: 201 GFPTGVKWQFAADQPAG-DKYVICNADEGDPGAFMDRSILEGDPHAVLEAMAIAGYAIGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++Y+R E+    + LQ A+++    GL G +     +  DI +  GAGA++CGEETA
Sbjct: 260 QQGYVYIRAEYPIAVKRLQIAIEQAKELGLFGEHILGTDFSFDIEIRLGAGAFVCGEETA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++S+EGK+G P  KPPFPA  G++G PT +NNVE+ A V  I+ +G+ W+S  G E ++
Sbjct: 320 LIQSIEGKRGMPVPKPPFPAVSGVWGKPTIINNVETYANVAQIILKGSGWFSAIGTEKSK 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +     VE  M  T  E+I +  GG         AV  GG S  CL    
Sbjct: 380 GTKVFALGGKIVNTGLVEIPMGTTLREVIYEIGGGCP-NGKKFKAVQTGGPSGGCLTVED 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +GS +G+  +IV+D    ++        F   ESCG+CTPCR GT  
Sbjct: 439 L-DTPIDFDNLIALGSMMGSGGMIVLDEDNCMVDVARFYMEFIVDESCGKCTPCRVGTKR 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++  + +G      +D L  + K I+   +C LG  AA P+   ++ FR   E  + 
Sbjct: 498 MLELLTDICEGRGTMETLDELETLGKMIKDTALCGLGQTAANPVLSTLRLFRDEYEAHVK 557

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 558 E-KRCP 562


>gi|150390845|ref|YP_001320894.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149950707|gb|ABR49235.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 582

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 158/425 (37%), Positives = 240/425 (56%), Gaps = 7/425 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
           L  Q RI   N   +  +++   + +  ++ + K + E     +I E+K S +RGRGGAG
Sbjct: 97  LRKQKRIALKNCGLIDPQNIHHYIDQNGYEAIKKCIGEMTPAEVIEEIKVSNIRGRGGAG 156

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW+   +  ++ P Y+V NADE +PG   DR I+  +PH +IEG +IA++AIGA 
Sbjct: 157 FPTWFKWNAAMQS-NEYPKYIVCNADEGDPGAFMDRSILEGDPHAIIEGMMIAAYAIGAQ 215

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
              +YVR E+    E LQ A+ +     LLG +     +  DI V  GAGA++CGEETAL
Sbjct: 216 YGVVYVRAEYPLAIERLQKAILQAKELNLLGDHIFNSQFQFDIKVKAGAGAFVCGEETAL 275

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + SLEG++G PRLKPPFPA  GL+  PT +NNVE+ A +P I+ +G   ++  G  N++G
Sbjct: 276 IASLEGERGMPRLKPPFPAEKGLWQKPTNINNVETFANIPWIINQGGKAFADIGVNNSQG 335

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +     VE  M  +  E+I    GGI    D   A+  GG S  C+P   +
Sbjct: 336 TKVFALTGKIRDGGLVEVPMGTSLQEIIFDIGGGILNDRD-FKALQLGGPSGGCVP-NAL 393

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              I+DY+ + + G+ +G+  ++VMD +T ++        F   ESCG+C  CR GT  M
Sbjct: 394 LDTIVDYESVTKTGAIMGSGGMVVMDDTTCMVDMAKFFLDFTCKESCGKCIHCRLGTKRM 453

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ R+ +G  Q  +I+LL E+   I+  ++C LG  A  P+   IK FR   E+ I  
Sbjct: 454 LEILTRITEGHGQTGDIELLEELGSGIKEGSLCGLGQTAPNPVLSTIKYFREEYEKHIID 513

Query: 419 YHRCN 423
              C 
Sbjct: 514 -KTCP 517


>gi|52842982|ref|YP_096781.1| NADH dehydrogenase I, F subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630093|gb|AAU28834.1| NADH dehydrogenase I, F subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 428

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 211/408 (51%), Positives = 271/408 (66%), Gaps = 6/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  SLS   S G +    KIL++      II E+K S LRGRGGAGF TG+KWSFM +  
Sbjct: 19  ESWSLSTYESIGGYSAWRKILKEQTSPQLIIEELKTSALRGRGGAGFPTGLKWSFMNRN- 77

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           S    Y+V N+DE EPGTCKDR+I+   PH LIEG  IA + +GA   + Y+RGEF    
Sbjct: 78  SPVQKYVVCNSDEGEPGTCKDREILTLNPHQLIEGMAIAGYVMGATVGYNYIRGEFWLPF 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E  +AA+ E Y +GLLG N    G+D D+  H GAGAYICGEETALL S+EGKKG PR K
Sbjct: 138 ERTEAAIKEAYDAGLLGKNILGSGFDFDLYNHLGAGAYICGEETALLNSIEGKKGMPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPAN GLYG PTT+NN E+ A VP I+ +G  W+   G+ NN G K FS+SGHVN P 
Sbjct: 198 PPFPANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F  L++   G I+G    + AVIPGGSS+P LP   M G  MDYD +++ G
Sbjct: 258 NYEIPLGTPFKTLLDLAGGVIKG--RKIKAVIPGGSSMPVLPGDVMLGLDMDYDSIQKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           SGLG+ AVI+MD +T ++ A++R+S FY  ESCGQCTPCREGTGW++R++ R++ G  + 
Sbjct: 316 SGLGSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIINGHGEP 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +++ L  V+ NIEGRTICALG+AAAWP+Q  +K+F    E  I    
Sbjct: 376 GDVEKLVNVANNIEGRTICALGEAAAWPVQSFVKHFYDEFEYFIKHKR 423


>gi|282899670|ref|ZP_06307634.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195549|gb|EFA70482.1| Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit
           [Cylindrospermopsis raciborskii CS-505]
          Length = 533

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 146/421 (34%), Positives = 241/421 (57%), Gaps = 6/421 (1%)

Query: 1   MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T Q   +  N   +  + +   ++   +  + ++L E     ++  +  SGLRGRGGA
Sbjct: 116 FFTKQLPIVLENSGRVDPERIQSYIAANGYQALYQVLREMKPAEVVEVITKSGLRGRGGA 175

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW  + K       +++ NADE +PG   DR ++  +PH ++EG  IA+++IGA
Sbjct: 176 GYPTGLKWGTVAKSP-GAKKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYSIGA 234

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + L+ A+ +    G+LG+N  +  +D  I +  GAGAY+CGEETA
Sbjct: 235 NQGYIYVRAEYPIAIKRLETAIRQAQRLGVLGTNIFESPFDFKIEIRIGAGAYVCGEETA 294

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A +  I+R GA W++  G E ++
Sbjct: 295 LMASIEGKRGVPHPRPPYPAESGLWGYPTLINNVETFANIAPIIRNGAEWFANIGTEKSK 354

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M  T  E++E+  GGI  G     AV  GG S  C+PA  
Sbjct: 355 GTKVFALAGKIRNTGLIEVPMGTTLGEIVEQMGGGIPDGG-MAKAVQTGGPSGGCIPASA 413

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+ L  +GS +G+  +IVMD++T+++        F   ESCG+C PCR GT  
Sbjct: 414 -FTTPVDYESLSALGSMMGSGGMIVMDQTTNMVDVARFFMEFCMDESCGKCIPCRVGTVQ 472

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ R+ +G   + ++ LL E+   ++  ++C LG +A  P+   ++ F+      I 
Sbjct: 473 LHDLLTRISQGKGTQNDLHLLEELCDMVKHTSLCGLGQSAPNPVFSTLRYFKEEYLALIK 532

Query: 418 Q 418
           Q
Sbjct: 533 Q 533


>gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 631

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +    +  + K+L E   D +I  +  SGLRGRGG 
Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG KWSF     SD   Y++ NADE +PG   DR I+  +PH++IE   IA +AIGA
Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+      L+ A+D+    GLLG N    G++ +I + +GAGA++CGEETA
Sbjct: 265 SKGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P I+ +GA WY   G E + 
Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINKGADWYKSIGTEKSN 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I    GGI+       AV  GG S  C+PA  
Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++  + ++  G   + +++ L E+S  I+  ++C LG  A  P+   ++ F    E  ++
Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVN 562

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 563 E-KRCP 567


>gi|257095314|ref|YP_003168955.1| NADH-quinone oxidoreductase subunit F [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047838|gb|ACV37026.1| NADH-quinone oxidoreductase, F subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 442

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 211/414 (50%), Positives = 275/414 (66%), Gaps = 7/414 (1%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           L G     L+D + RG +  + +ILE+   ++++INEVK S LRGRGGAGF TG+KWSFM
Sbjct: 15  LDGDNAWRLADYVKRGGYTALRRILEEKLPQEYVINEVKKSVLRGRGGAGFPTGLKWSFM 74

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
           P+       Y+V N+DE EPGT KDRDI+R++PH++IEG  IA FA+GA   + Y+ GE 
Sbjct: 75  PRSFPG-DKYVVCNSDEGEPGTFKDRDILRYDPHSVIEGMAIAGFAMGAGRGYNYIHGEV 133

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
               E  + A+DE  A+GLLG +    G++ D+  HHG GAYICGEETALLES+EGKKGQ
Sbjct: 134 WEIYERFEEALDEARAAGLLGKDILGSGFNFDLFAHHGYGAYICGEETALLESIEGKKGQ 193

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR KPPFPA+ GLYG PTT+NN E+ A +P I+  G   Y   G+ NN GTKLFS+SGHV
Sbjct: 194 PRFKPPFPASFGLYGKPTTINNTETFASIPYIINLGGEHYLEAGKANNGGTKLFSVSGHV 253

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
           N P   E  +   F  L++   G    G   L   IPGGSS P +PA  M    MDYD +
Sbjct: 254 NRPGNYEIPLGTPFATLLDMAGGM--RGGRQLKGCIPGGSSSPVVPAATMMDCTMDYDSI 311

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            + GS LG+ AVIVMD +T ++KA+ RLS FY  ESCGQCTPCREGT W+ +++ R+  G
Sbjct: 312 SKAGSMLGSGAVIVMDETTCMVKALERLSFFYYEESCGQCTPCREGTNWLYKIVHRIEHG 371

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             +  ++DLL  V+ NI GRTICALGDAA+ P+Q  IK++R      I ++ +C
Sbjct: 372 QGRADDLDLLASVTTNIMGRTICALGDAASMPVQSFIKHYRDEFAYHI-EHKKC 424


>gi|222529289|ref|YP_002573171.1| NADH dehydrogenase [Caldicellulosiruptor bescii DSM 6725]
 gi|312622465|ref|YP_004024078.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456136|gb|ACM60398.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor bescii DSM 6725]
 gi|312202932|gb|ADQ46259.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 598

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG 
Sbjct: 111 FYKKQMRIALRNCGVINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+
Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + L+ A+++    GLLG N    G++ DI +  GAGA++CGEETA
Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAIEQARQYGLLGKNILGTGFEFDIEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++
Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    +E  M  T  E++E   G    G     AV  GG S  C+PA  
Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G   + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + 
Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|332285012|ref|YP_004416923.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Pusillimonas
           sp. T7-7]
 gi|330428965|gb|AEC20299.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Pusillimonas
           sp. T7-7]
          Length = 455

 Score =  495 bits (1274), Expect = e-138,   Method: Composition-based stats.
 Identities = 211/414 (50%), Positives = 261/414 (63%), Gaps = 9/414 (2%)

Query: 14  GLQG--KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           GL G    L D + RG ++ + KIL      D +I EVKAS LRGRGGAGF TG+KWSFM
Sbjct: 40  GLDGANWGLEDYVKRGGYEALRKILTTGMTPDDVIAEVKASSLRGRGGAGFPTGLKWSFM 99

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
           P+       YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    + Y+ GE 
Sbjct: 100 PRTLPG-QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGITVGYNYIHGEI 158

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
               E  + A+++  A+G LG       +   +   HG GAYICGEETALLESLEGKKGQ
Sbjct: 159 FEIYERFEEALEQARAAGFLGDKILGSEFSFQLHAFHGYGAYICGEETALLESLEGKKGQ 218

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR KPPFPA+ GLYG PTT+NN E+ A VP I R  A  Y   G  N  GTKLFSISG V
Sbjct: 219 PRFKPPFPASFGLYGKPTTINNTETFAAVPWIFRHSAQEYLDIGVANAGGTKLFSISGDV 278

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E  +   F +L+E   G    G   L AVIPGGSS P LPA  M    MDYD +
Sbjct: 279 ELPGNYEIPLGTPFSKLLELAGGM--RGGRKLKAVIPGGSSAPVLPAEIMMQTNMDYDSI 336

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G
Sbjct: 337 AKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMLARIENG 396

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             +  ++D+L  V+ NI GRTICALGDAAA P++  IK+FR      I ++  C
Sbjct: 397 QGRPEDLDVLDSVAHNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHI-EHKSC 449


>gi|54295613|ref|YP_128028.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Lens]
 gi|54298767|ref|YP_125136.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Paris]
 gi|148361097|ref|YP_001252304.1| NADH dehydrogenase I subunit F [Legionella pneumophila str. Corby]
 gi|296108427|ref|YP_003620128.1| NADH dehydrogenase I chain F [Legionella pneumophila 2300/99 Alcoy]
 gi|53752552|emb|CAH13984.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Paris]
 gi|53755445|emb|CAH16941.1| NADH dehydrogenase I chain F [Legionella pneumophila str. Lens]
 gi|148282870|gb|ABQ56958.1| NADH dehydrogenase I, F subunit [Legionella pneumophila str. Corby]
 gi|295650329|gb|ADG26176.1| NADH dehydrogenase I chain F [Legionella pneumophila 2300/99 Alcoy]
 gi|307611653|emb|CBX01344.1| NADH dehydrogenase I chain F [Legionella pneumophila 130b]
          Length = 425

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 211/408 (51%), Positives = 270/408 (66%), Gaps = 6/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           +  SLS   S G +    KIL++      II E+K S LRGRGGAGF TG+KWSFM +  
Sbjct: 16  EPWSLSTYESIGGYSAWRKILKEQTSPQLIIEELKTSALRGRGGAGFPTGLKWSFMNRN- 74

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           S    Y+V N+DE EPGTCKDR+I+   PH LIEG  IA + +GA   + Y+RGEF    
Sbjct: 75  SPVQKYVVCNSDEGEPGTCKDREILTLNPHQLIEGMAIAGYVMGATVGYNYIRGEFWLPF 134

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E  +AA+ E Y +GLLG N    G D D+  H GAGAYICGEETALL S+EGKKG PR K
Sbjct: 135 ERTEAAIKEAYDAGLLGKNILGSGVDFDLYNHLGAGAYICGEETALLNSIEGKKGMPRFK 194

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPAN GLYG PTT+NN E+ A VP I+ +G  W+   G+ NN G K FS+SGHVN P 
Sbjct: 195 PPFPANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGAKCFSVSGHVNKPG 254

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F  L++   G I+G    + AVIPGGSS+P LP   M G  MDYD +++ G
Sbjct: 255 NYEIPLGTPFKTLLDLAGGVIKG--RKIKAVIPGGSSMPVLPGDVMLGLDMDYDSIQKAG 312

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           SGLG+ AVI+MD +T ++ A++R+S FY  ESCGQCTPCREGTGW++R++ R++ G  + 
Sbjct: 313 SGLGSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRIINGHGEP 372

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +++ L  V+ NIEGRTICALG+AAAWP+Q  +K+F    E  I    
Sbjct: 373 GDVEKLVNVANNIEGRTICALGEAAAWPVQSFVKHFYDEFEYFIKHKR 420


>gi|119897692|ref|YP_932905.1| putative NADH-ubiquinone oxidoreductase subunit F [Azoarcus sp.
           BH72]
 gi|119670105|emb|CAL94018.1| putative NADH-ubiquinone oxidoreductase chain F [Azoarcus sp. BH72]
          Length = 439

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 216/418 (51%), Positives = 273/418 (65%), Gaps = 7/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G +   L D + RG +  + KI+ +    + II E+KAS LRGRGGAGF TG+K
Sbjct: 7   ILAGLDGDRTWRLQDYIGRGGYSALKKIIAEKIPPETIIAELKASALRGRGGAGFPTGLK 66

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YL  N+DE EPGT KDRDI+R+ PHT+IEG VIA++A+GA   + Y+
Sbjct: 67  WSFMPRSFPG-DKYLACNSDEGEPGTFKDRDILRYNPHTVIEGMVIAAYAMGATRGYNYI 125

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     +  + A+DE   +GL+G N     +  ++  HHG GAYICGEETALLES+EG
Sbjct: 126 HGEVFELYQRFEEALDEARQAGLVGQNILGSEFSFELFAHHGYGAYICGEETALLESIEG 185

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   +   G+ NN GTKLFSI
Sbjct: 186 KKGQPRFKPPFPASYGLYGKPTTINNTETFASVPFIINLGGEGFLNLGKPNNGGTKLFSI 245

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHVN P   E ++   F EL+E   G    G   L AVIPGGSS P LP   M    MD
Sbjct: 246 SGHVNRPGVYEINLGTPFSELLEMAGGM--RGGRKLKAVIPGGSSAPVLPGDIMMDCTMD 303

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  ++KA+ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 304 YDSISKAGSMLGSGAVIVMDETVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRVVHR 363

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +  G+ +  ++DLL  V+ NI GRTICALGDAA+ P+Q  IK+F    E  I+   +C
Sbjct: 364 IENGLGRPDDLDLLNSVTGNIMGRTICALGDAASMPVQSFIKHFGAEFEYHIEN-KKC 420


>gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
          Length = 623

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 236/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ + ++ G +  + K L E   + +I+EV  SGLRGRGGA
Sbjct: 136 FLKLQTRIVLENCGNIDAESIDEYIAIGGFSALSKALFEMTPETVIDEVDKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW  +     ++  Y+V N DE +PG   D  +M  +P+ +IEG  IA++A+GA
Sbjct: 196 GFPAGKKWKQVAGQP-EKTRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMTIAAYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +    GLLG +     +   + ++ GAGA++CGE +A
Sbjct: 255 QEGYIYVRAEYPLSVARLKKAMRQAEEYGLLGDHILGTDFSFHLHINRGAGAFVCGEGSA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+ A VP I+  GA W+   G E + 
Sbjct: 315 LTASIEGNRGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPKIILEGADWFRTIGTEKSP 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FS++G +     +E  M  T   +I    GG++ G      V  GG S  CL    
Sbjct: 375 GTKTFSLTGSIETTGLIEVPMGTTLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLTEEH 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D +K+  + +G+  ++VMD +T +++       F + ESCG+C PCREGT  
Sbjct: 434 L-DQPLDFDAVKKFDAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V+G  + +++D L E+++ +    +C LG +A  P+   +K FR   EE I 
Sbjct: 493 MLEILERIVEGKGELKDLDQLEELAEMVRSMALCGLGKSAPLPVISTLKRFREEYEEHII 552

Query: 418 QYHRC 422
              +C
Sbjct: 553 N-KKC 556


>gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402
           065]
          Length = 631

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +    +  + K+L E   D +I  +  SGLRGRGG 
Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG KWSF     SD   Y++ NADE +PG   DR I+  +PH++IE   IA +AIGA
Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+      L+ A+D+    GLLG N    G++ +I + +GAGA++CGEETA
Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P I+ RGA WY   G E + 
Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINRGADWYKSIGTEKSN 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I    GGI+       AV  GG S  C+PA  
Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++  + ++  G   + +++ L E+S  I+  ++C LG  A  P+   ++ F    E  +D
Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVD 562

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 563 E-KRCP 567


>gi|114566201|ref|YP_753355.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337136|gb|ABI67984.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 590

 Score =  494 bits (1273), Expect = e-138,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ D   +  +  + K+L     + +I E++ S LRGRGGA
Sbjct: 99  FLQQQLRIVLRNCGRIDPESIDDYRRQDGYSALQKVLAKMSPEEVIEEIEVSALRGRGGA 158

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    +       Y++ NADE +PG   DR I+  +PH ++EG +IA++AIGA
Sbjct: 159 GFLTGLKWKAT-REAGGLYRYIICNADEGDPGAFMDRSILEGDPHAVLEGMIIAAYAIGA 217

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY R E+    + L+ A+ +    GLLG       +  DI +  GAGA++CGEETA
Sbjct: 218 EQGIIYCRAEYPLAVKRLEIAIAQARQKGLLGQRILGSDFSFDISIQQGAGAFVCGEETA 277

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PRLKPP+P+  GL+G P+++NNVE++A VP I+R G   ++  G   ++
Sbjct: 278 LIASLEGERGMPRLKPPYPSESGLWGYPSSINNVETLANVPWIIRNGGEAFAALGSRESK 337

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M  T  E+I    GG++ G   + AV  GG S  C+PA  
Sbjct: 338 GTKVFALAGKIERGGLVEVPMGTTLREIIYGIGGGVKTG-RRIKAVQMGGPSGGCIPAE- 395

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY  L   G+ +G+  ++V+D S+ ++        F + ESCG+C  CR GT  
Sbjct: 396 LLDIPVDYQSLSNTGAIMGSGGMVVLDESSCMVDLARFFLDFTQKESCGKCVQCRIGTKR 455

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  Q+ +I+LL E+S +I   ++C LG +A  P+   I+ FR   E  I 
Sbjct: 456 MLEILERICQGEGQEGDIELLEELSAHISENSLCGLGQSAPNPVLTTIRYFRDEYEAHIR 515

Query: 418 QYHRCN 423
           +  +C 
Sbjct: 516 E-KKCP 520


>gi|226470474|emb|CAX70517.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma
           japonicum]
          Length = 432

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 252/390 (64%), Positives = 305/390 (78%), Gaps = 1/390 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D+DRIFTNLYG     L  +M RGHW    +I+ KG DWII E+K SGLRGRGGAGF 
Sbjct: 41  LSDEDRIFTNLYGRHDWRLKGAMKRGHWYKTKEIILKGSDWIIEEIKKSGLRGRGGAGFP 100

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PHTLIEGC+IA  A+GA+ A
Sbjct: 101 SGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHTLIEGCLIAGKAMGANVA 160

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +G LG N+   G++ D+ +H GAGAYICGEETAL+E
Sbjct: 161 YIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGAYICGEETALIE 220

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++ FGRE NRGTK
Sbjct: 221 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFASFGRERNRGTK 280

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN PCTVEE MSI   +LIE+H GG+ GGWDNLLAVIPGGSS P LP      
Sbjct: 281 LFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSSTPLLPKDICST 340

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L +  SGLGTAA+IVM+RS D++  I RL  FY+HESCGQCTPCREG  WM +
Sbjct: 341 VLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCTPCREGCRWMGQ 400

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
           +M R VKG A K EID+++E+SK +EGRTI
Sbjct: 401 IMSRFVKGNANKSEIDMIWEISKQMEGRTI 430


>gi|297565709|ref|YP_003684681.1| NADH-quinone oxidoreductase subunit F [Meiothermus silvanus DSM
           9946]
 gi|296850158|gb|ADH63173.1| NADH-quinone oxidoreductase, F subunit [Meiothermus silvanus DSM
           9946]
          Length = 444

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 196/414 (47%), Positives = 265/414 (64%), Gaps = 7/414 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           ++ ++      +L   +S G ++ V K L    + ++ EVK SGLRGRGGAGF TG+KWS
Sbjct: 23  LYKHVGIKDSWTLEYYLSHGGYNAVKKALAMTPEQVVEEVKRSGLRGRGGAGFPTGLKWS 82

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMPK  S + HY+V NADESEPG+ KDR +M  +PH LIEG +IA +AI A   +IY+RG
Sbjct: 83  FMPK-PSGKQHYIVCNADESEPGSFKDRYLMEDDPHQLIEGMIIAGYAIHATKGYIYIRG 141

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+ R  + L+ A+ E YA G LG N    G+  D+ VH GAGAYICGEETAL+ SLEG +
Sbjct: 142 EYRRAYDRLKGAIQEAYARGYLGQNLFGTGFSFDLYVHRGAGAYICGEETALMNSLEGLR 201

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
             PRLKPPFPA  GL+G PTT+NNVES+     I+ RGA W++  G E ++G KL+ +SG
Sbjct: 202 ANPRLKPPFPAQAGLWGKPTTINNVESLCSAVHIIDRGADWFASMGTEKSKGHKLYQVSG 261

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDY 305
               P   E  M  TF EL+    GG     + + A+IPGGSS P LP         MDY
Sbjct: 262 PFKRPGVYELPMGTTFRELLMDWAGGPT---EPIQAIIPGGSSCPPLPWNDDTLDTPMDY 318

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMRVMER 364
           + L   GS LGT  VI +  S  ++ A+W ++ FY HESCG+CTPCREG  GWM+ + E+
Sbjct: 319 ESLAAKGSLLGTGGVIGIPASMSMVDAMWNVTRFYGHESCGKCTPCREGVSGWMVGLFEK 378

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +G  +  +++LL ++   IEGR+ CAL DAA WP++G +K+FR    E ++Q
Sbjct: 379 IGRGQGKPGDVELLEDLLDQIEGRSFCALADAACWPVRGSLKHFRHQYVELVEQ 432


>gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. 230613]
          Length = 631

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +    +  + K+L E   D +I  +  SGLRGRGG 
Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG KWSF     SD   Y++ NADE +PG   DR I+  +PH++IE   IA +AIGA
Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+      L+ A+D+    GLLG N    G++ +I + +GAGA++CGEETA
Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P I+ +GA WY   G E + 
Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINKGADWYKSIGTEKSN 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I    GGI+       AV  GG S  C+PA  
Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++  + ++  G   + +++ L E+S  I+  ++C LG  A  P+   ++ F    E  ++
Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVN 562

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 563 E-KRCP 567


>gi|149927546|ref|ZP_01915800.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Limnobacter
           sp. MED105]
 gi|149823819|gb|EDM83045.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Limnobacter
           sp. MED105]
          Length = 420

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 201/413 (48%), Positives = 265/413 (64%), Gaps = 8/413 (1%)

Query: 12  LYGLQG--KSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           L GL G    L    +RG +  + KIL +G  ++ +I EVK S LRGRGGAGF TG+KWS
Sbjct: 3   LAGLDGSNWDLKGYEARGGYKALRKILTEGISQEDVIAEVKKSALRGRGGAGFPTGLKWS 62

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+       YL  N+DE EPGT KDRDI+R+ PH++IEG  IA++A+G    + Y+ G
Sbjct: 63  FMPRQFPG-QKYLACNSDEGEPGTFKDRDILRYNPHSVIEGMAIAAYAMGISVGYNYIHG 121

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E     E  + A+++  A+G LG N     +   +  H G GAYICGEETAL+ES+EGKK
Sbjct: 122 EIWETYERFEEALEQARAAGYLGDNIMGSKFSFQLHAHQGYGAYICGEETALIESIEGKK 181

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPR KPPFPA+ G+YG PTT+NN E+ A VP I++ G  W+   G+ NN GTK+FSISG
Sbjct: 182 GQPRFKPPFPASYGIYGKPTTINNTETFAAVPFIIQNGGDWFLELGKPNNGGTKIFSISG 241

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  +   F  L+E   G    G   + AVIPGGSS+P LP   M    MDYD
Sbjct: 242 DVEKPGNYEIPLGTPFATLLEMAGGM--KGGRKIKAVIPGGSSMPVLPGDVMMATDMDYD 299

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+ 
Sbjct: 300 SIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWLYRIINRIE 359

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            G  +  ++D+L  ++ NI+GRTICALGDAAA P++  +K+F    E  I   
Sbjct: 360 HGEGRPEDLDMLNSIADNIQGRTICALGDAAAMPVRAFLKHFHEEFEHHITHK 412


>gi|239616592|ref|YP_002939914.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
 gi|239505423|gb|ACR78910.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
          Length = 539

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 165/417 (39%), Positives = 250/417 (59%), Gaps = 5/417 (1%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +T ++RI     G +  K++ + ++   +  + K L+   + +I EVK SGLRGRGGAGF
Sbjct: 106 ITKEERIVLKRAGEINPKNIDEYIAFDGYQGLAKALQMSPEDVIKEVKESGLRGRGGAGF 165

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW F  KV + +  Y++ NADE EPGT KDR IM  +PH++IEG  I ++A+GA+ 
Sbjct: 166 PAGLKWEFTYKVDA-KEKYVICNADEGEPGTFKDRLIMEGDPHSVIEGMAITAYAVGANK 224

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+     +L+ A+ + Y  GLLG N     +  D+ V  GAGAY+CGEETAL+
Sbjct: 225 GYIYIRGEYFESVNNLRIAISQAYDYGLLGENILGTNFSFDLSVRLGAGAYVCGEETALI 284

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EG  G+PRLKPP+P   GLY  PT VNNVE+ A VP I+  GA W+   G E++ GT
Sbjct: 285 ESIEGHAGRPRLKPPYPPVKGLYQKPTVVNNVETFANVPWIVLNGAEWFRSIGTESSPGT 344

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K++S+ G++      E  M  T  ELI KH GGI     NL  V  GG++   +   ++ 
Sbjct: 345 KVYSLCGNLVRRGITEVPMGTTVAELIYKHGGGIA-NGRNLKMVQTGGAAGTFIKPDEI- 402

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D++  ++ G  LG+  ++ +D +   +     L  F+ HESCG+C+PCREGT  ++
Sbjct: 403 NTPLDFNSFRDYGVALGSGVILAVDDTHCAVDVALNLMEFFAHESCGKCSPCREGTKLIV 462

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +++ + KG   K  I  LY++++ ++    C LG +   P++ L+  FR  IE  I
Sbjct: 463 NILKEISKGRGTKEMIGQLYDIAETMQNSAFCGLGQSVPVPLRSLLDRFRDEIEAHI 519


>gi|319943353|ref|ZP_08017635.1| NADH-quinone oxidoreductase subunit F [Lautropia mirabilis ATCC
           51599]
 gi|319743168|gb|EFV95573.1| NADH-quinone oxidoreductase subunit F [Lautropia mirabilis ATCC
           51599]
          Length = 449

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 203/423 (47%), Positives = 265/423 (62%), Gaps = 12/423 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-------KGRDWIINEVKASGLRGRGGAGF 60
           IF  L    G +L    +RG +  + ++L           + +I EVKASGLRGRGGAGF
Sbjct: 25  IFAGLTSADGWTLEQYEARGGYQALKRVLLGADGKQPMTPEEVIAEVKASGLRGRGGAGF 84

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+       YLV N+DE EPGT KDRDI+R+ PH +IEG  IA++A+G   
Sbjct: 85  PTGLKWSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRYNPHIVIEGMTIAAYAMGISA 143

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            + Y+ GE  R  E  + A+ +  A+G LG       +  ++  HHG GAYICGEETALL
Sbjct: 144 GYNYIHGEIFRIYERFEEALAQARAAGYLGDRILGTDFSFNLNAHHGFGAYICGEETALL 203

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ + VP I+R G   +   G+ NN GT
Sbjct: 204 ESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFSAVPWIIRNGGQAFLEAGKPNNGGT 263

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS+ G V  P   E  +   F +L+E   G        L  VIPGGSS P +P   M 
Sbjct: 264 KIFSVGGDVERPGNYEVPLGTPFAKLLELAGG--VRYGRKLKMVIPGGSSAPVIPGHMMM 321

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDYD + + GS LG+ AVIVMD +   ++++ RLS FY HESCGQCTPCREGTGW+ 
Sbjct: 322 DLTMDYDAIAKAGSMLGSGAVIVMDETRCPVRSLERLSYFYSHESCGQCTPCREGTGWLY 381

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R++ R+  G  +  +ID L  V+ NI+GRTICALGDAAA P++G IK++R      + ++
Sbjct: 382 RLVHRIEHGQGRPEDIDELDRVAGNIQGRTICALGDAAAMPVRGFIKHYRDEFVHHV-EH 440

Query: 420 HRC 422
             C
Sbjct: 441 KTC 443


>gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
 gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
          Length = 628

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 246/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++RG +  ++K L E     +I  VKASGLRGRGG 
Sbjct: 142 FYAKQMRIALRNCGAIDPENIDEYIARGGYLAIEKCLSEMTPAQVIETVKASGLRGRGGG 201

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    +  +D   Y+  NADE +PG   DR I+  +PH +IE   IA +AIGA
Sbjct: 202 GFPTGIKWGLAAQNKAD-QKYVCCNADEGDPGAFMDRSILEGDPHAVIEAMSIAGYAIGA 260

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+      L+ A+++    GLLG N    G+  D+ +  GAGA++CGEETA
Sbjct: 261 TQGYVYVRAEYPIAVHRLRVAIEQAREYGLLGDNVLGTGFKFDMDIRLGAGAFVCGEETA 320

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+PR +PP+PA  GL+  PT +NNVE+ A +P I+ +GA W++  G + + 
Sbjct: 321 LMTSIEGKRGEPRPRPPYPAVKGLFEKPTILNNVETYANIPQIILKGADWFNSIGTKGST 380

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N+   VE  M  T   ++E+  GGI  G     A   GG S  C+PA  
Sbjct: 381 GTKVFALGGKINHTGLVEVPMGTTLRTIVEEIGGGIPSGRP-FKAAQMGGPSGGCVPAEY 439

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L E+G+ +G+  +IVMD +T ++        F   ESCG+CTPCR GT  
Sbjct: 440 L-DVPIDYDSLIEIGAMMGSGGLIVMDDTTCMVDIAKFFLEFTVDESCGKCTPCRIGTKR 498

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ +++R+ +G      ++ + ++S++I+   +CALG  A  P+   +K FR      + 
Sbjct: 499 LLELLDRISRGEGTMESLEEIEDLSQHIKNSALCALGQTAPNPVLSTLKFFRNEYVAHVK 558

Query: 418 QYHRCN 423
              +C 
Sbjct: 559 D-RKCP 563


>gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 623

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 158/425 (37%), Positives = 240/425 (56%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  +S S+ +++G +  + K+L E     +   +  S LRGRGG 
Sbjct: 137 FYRKQTRMVLKNCGSINAESFSEYVAKGGYKALGKVLFEMQPQEVCQSILDSNLRGRGGG 196

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ +G KW  + K  S+   Y+V N DE +PG   DR IM  +PH +IEG  IA +A  +
Sbjct: 197 GYPSGAKWKQVLKQDSE-VKYVVCNGDEGDPGAFMDRSIMEGDPHGVIEGMTIAGYATKS 255

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L+ A+++    G+LG N    G+  DI ++ GAGA++CGE +A
Sbjct: 256 TIGYIYVRAEYPLAVERLKIAIEDARKHGMLGENILSSGFSFDININMGAGAFVCGEGSA 315

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG++G PR+KPP     GL+  PT +NNVE+ A VP I+  G+ WY   G EN+ 
Sbjct: 316 LTASIEGERGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPLIINNGSEWYKSIGPENSP 375

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+I+G+VN+   +E  M  T  E+I    GGI+       AV  GG S  CL    
Sbjct: 376 GTKAFAITGNVNHTGLIEVPMGTTLREVIFDIGGGIK-NGKKFKAVQIGGPSGGCLTEEH 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK +G+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  
Sbjct: 435 L-DLPLDFDSLKRVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTKR 493

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++V G   K ++DLL E++  I    +C LG +AA P+   +K FR    E + 
Sbjct: 494 MLEILEKIVNGKGSKEDLDLLEELADTISSTALCGLGKSAASPVVSTLKYFRDEYLEHVV 553

Query: 418 QYHRC 422
              +C
Sbjct: 554 D-KKC 557


>gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
 gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
          Length = 599

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 153/417 (36%), Positives = 232/417 (55%), Gaps = 5/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N+  +   ++ D ++RG +  + K L    D II EV+ASG+RGRGGAGF TG KW 
Sbjct: 117 VLHNIGEIDPTNIDDYIARGGYSALKKALSMDADRIIGEVEASGIRGRGGAGFPTGTKWR 176

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
              K  SD   Y+  N DE +PG   DR I+  +PH++IEG +I + AI A   ++Y+R 
Sbjct: 177 QALKYDSD-VKYVACNGDEGDPGAFMDRSILEGDPHSVIEGMIICACAIDAQEGYMYIRD 235

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    E+ + A+ +    G LG +    G   DI +  G GA++CGE TAL+ S+EG+ 
Sbjct: 236 EYGLAVENCKIALQQAREKGFLGDSVMGTGKSFDIQIVRGGGAFVCGESTALMASVEGRV 295

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR K       GL+  PT +NNVE++A +P I++ G + +   G E + GTK+F++ G
Sbjct: 296 GEPRAKYIRSVQRGLWNKPTVLNNVETLANIPRIIQDGGAKFKELGTEKSSGTKVFALVG 355

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V     VE  M  T   LI    GGI G      AV  GG S  C+PA  +    MD+D
Sbjct: 356 KVKRTGLVEIPMGSTLRHLIYDIGGGIPGDRP-FKAVQTGGPSGGCIPAE-LLDLPMDFD 413

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L   G+ +G+  VIVMD  + +++       F   ESCG+CTPCREG   ++ ++  + 
Sbjct: 414 TLTSYGAMMGSGGVIVMDDRSCMVEVARYYIEFLCDESCGKCTPCREGLRHLLTILTDIC 473

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           +G  Q+ +I+L+ ++   ++  ++C+LG +AA P+   IK FR   E  I +  RC 
Sbjct: 474 EGRGQEGDIELMEKICHTMQDASLCSLGKSAANPVLTTIKYFRDEYEAHIHE-KRCP 529


>gi|217968066|ref|YP_002353572.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217337165|gb|ACK42958.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 545

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 168/427 (39%), Positives = 244/427 (57%), Gaps = 10/427 (2%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
             Q RI   N   +  +S+ + ++ G ++ + K L E   + +I E+K SGLRGRGGAGF
Sbjct: 112 RRQVRIVLRNSGVINPESIEEYIANGGFEGLSKALSEMTPEDVIKEIKESGLRGRGGAGF 171

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW F  K+ SD   Y+V NADE EPGT KDR I+  +P  ++E   IA +A+GA  
Sbjct: 172 PAGLKWEFTYKIPSD-EKYVVCNADEGEPGTFKDRLILEGDPFRIVEAMTIAGYAVGAKK 230

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+    E +Q A++     GLLG N     +  DI V  GAGAYICGEETAL+
Sbjct: 231 GYIYIRGEYKLSIERMQKAINTAREYGLLGENILGTNFSFDIEVRKGAGAYICGEETALI 290

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR+KPP+P + GL   PT VNNVE++A VP I+R GA W+  FG E   GT
Sbjct: 291 ESLEGKRGIPRIKPPYPVSQGLRNKPTVVNNVETLANVPDIIRNGAKWFRQFGTEKCPGT 350

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+++I G V     +E  M     ++I ++ GGI+ G       + GG++   L    M 
Sbjct: 351 KVYTILGDVVNAGLIEVEMGTPLRDIIFQYGGGIKNGGK-FKCALVGGAAGAFLGEE-ML 408

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD++ LKE  + LG+ A++VM     I+  +  +  F+KHESCG+CTPCR GT  ++
Sbjct: 409 DVKMDFENLKEYKAVLGSGAILVMSDGACIVDMLKSILRFFKHESCGRCTPCRVGTKRLV 468

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ER       + ++D +  +S  ++  + C LG +   P+   +K FR          
Sbjct: 469 EIIERFASLEGTEEDLDEMVNISLVMKDTSFCPLGQSVYLPVSSAVKYFREEFVSHFKDK 528

Query: 420 H----RC 422
           +    RC
Sbjct: 529 YCVSGRC 535


>gi|116624103|ref|YP_826259.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227265|gb|ABJ85974.1| NADH dehydrogenase (quinone) [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 548

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 154/419 (36%), Positives = 243/419 (57%), Gaps = 6/419 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +I   N   +  + + D ++   +  +   + E     +I +VK+S LRGRGGA
Sbjct: 116 FFARQKKIVLENSGVIDPERIEDYIAHHGYAALVTAITEMSPQEVIEQVKSSSLRGRGGA 175

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KWS + K   ++  Y++ NADE +PG   DR ++  +PH ++EG  IA+FA+GA
Sbjct: 176 GYPTGLKWSTVAKT-GEQQKYVICNADEGDPGAFMDRAVLESDPHRVLEGMAIAAFAVGA 234

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+    + L+ A+ +    GLLG++     +   I +  GAGA++CGEETA
Sbjct: 235 QKGFIYVRAEYPLAVKHLKGAIRQAERLGLLGNSICGTRFSFHIDIRLGAGAFVCGEETA 294

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PPFPA  GL+ CPT +NNVE+ A +  ILR GA+W++  G E ++
Sbjct: 295 LIASIEGKRGTPRPRPPFPAESGLWECPTLINNVETFANIAPILRNGAAWFAAIGTERSK 354

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     +E  M IT  E+I +  GG+        AV  GG S  C+P  Q
Sbjct: 355 GTKVFALAGRVANTGLIEVPMGITLREIIHEIGGGVP-DGKRYKAVQTGGPSGGCIP-EQ 412

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
              + +DY+ L  +GS +G+  +IVMD+++ ++        F   ESCG+C PCR GT  
Sbjct: 413 HLDSPVDYESLARIGSIMGSGGMIVMDQTSCMVDVAKYFMEFCMSESCGKCIPCRAGTQQ 472

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M  ++E++  G A  +++ LL E+   +   ++C LG +A  P+   +K FR   +  +
Sbjct: 473 MHAILEKITAGEATAQDVALLEELCDLVRSTSLCGLGQSAPNPVVTTLKYFRGEYDAHL 531


>gi|302337010|ref|YP_003802216.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634195|gb|ADK79622.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Spirochaeta smaragdinae DSM 11293]
          Length = 1040

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 161/415 (38%), Positives = 246/415 (59%), Gaps = 5/415 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + +    +   S+ D+++ G +  + K+L E+  D +I+ +K SGLRGRGGAGF T +KW
Sbjct: 142 VLSRCGVVDPDSIEDAIACGAYTALAKVLNEEDADKVIDTLKISGLRGRGGAGFPTWLKW 201

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F  K   +   Y++ NADE +PG   DR ++  +PH LIEG  IA   IGA    +YVR
Sbjct: 202 DFTRKSPGE-EKYVLCNADEGDPGAFMDRSVLEGDPHALIEGMAIAGKTIGADHGVVYVR 260

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + L  A++    SGLLG N     ++ DI +  G+GA++CGEETAL+ S+EGK
Sbjct: 261 AEYPLAVKRLGHAIEAAKESGLLGENILGSEFNFDIEIRMGSGAFVCGEETALIASIEGK 320

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G+PR +PPFPAN GL+G P+ +NNVE+ A +  I+++GA WY+ FG   ++GTK+F+++
Sbjct: 321 RGEPRPRPPFPANKGLWGKPSLLNNVETYANIAGIIKKGAEWYASFGTTESKGTKVFALA 380

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G ++    VE  +     E++    GGI GG +   A   GG S  C+P   +    +DY
Sbjct: 381 GAISTSGLVEVPIGTCLGEVVFDIGGGIPGGKE-FKAAQIGGPSGGCIPREYL-NVPLDY 438

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
             L+E+G+ +G+  +IVMD  T ++        F + ESCG+CTPCR GT  M+ ++ER+
Sbjct: 439 ASLQELGAIMGSGGLIVMDDDTCMVDVARYFLEFVQEESCGKCTPCRVGTKRMLEILERI 498

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  +  +ID L E+   I+   +C LG  A  P+   I++FR   EE I  +H
Sbjct: 499 CNGKGEMEDIDRLIELGTKIKETALCGLGQTAPNPVLSTIRHFRHEYEEHIRDHH 553


>gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 626

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 149/423 (35%), Positives = 241/423 (56%), Gaps = 6/423 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
             Q  +      +  + +++ ++ G +  +  +L     + +I E+K SGLRGRGGAGF 
Sbjct: 143 KQQRVVLERCGYINPEDIAEYIAAGGYRALTSVLFSLSPEEVIEEIKKSGLRGRGGAGFP 202

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG KW    +V S    Y++ NADE +PG   DR ++  +PH +IEG +I  +AIG+   
Sbjct: 203 TGKKWEAARRVPS-SKRYVICNADEGDPGAFMDRALLEGDPHAVIEGMIICGYAIGSDEG 261

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++YVR E+    + L+ A+++ YA+GLLG N    G+   + ++ GAGA++CGE TAL+ 
Sbjct: 262 YVYVRAEYPLAVKRLRIAIEQAYAAGLLGENILGSGFSFHLHINEGAGAFVCGESTALMA 321

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG +G PR+K P     GL+G PT +NNVE+ A VP I+ RG+ W++  G + ++GTK
Sbjct: 322 SIEGNRGIPRIKVPRSTEKGLFGKPTVLNNVETFANVPLIILRGSQWFANIGTKGSKGTK 381

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F++SG V +   VE  M  T  ELI    G    G     A+  GG S  C+P   M  
Sbjct: 382 IFALSGKVKHTGLVEVPMGTTLKELIFDIGG-GIKGGKRFKALQIGGPSGGCIPED-MLD 439

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+ L   G+ +G+ +++VMD    ++        F + ESCG+CTPCREGT  M+ 
Sbjct: 440 LPIDYESLTGAGAMMGSGSIVVMDEDNCMVNTARFFLNFTERESCGKCTPCREGTKQMLN 499

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ER+ +G     ++ LL  + + ++  + C LG +A  P+   ++ FR    + + +  
Sbjct: 500 ILERITRGEGSPSDLSLLEFLGQVVKATSFCGLGTSAPNPVLTTLRFFRSEYLQHVTE-R 558

Query: 421 RCN 423
           RC+
Sbjct: 559 RCS 561


>gi|225621401|ref|YP_002722660.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kDa) subunit
           [Brachyspira hyodysenteriae WA1]
 gi|225216222|gb|ACN84956.1| DH:ubiquinone oxidoreductase, DH-binding (51 kDa) subunit
           [Brachyspira hyodysenteriae WA1]
          Length = 562

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 157/419 (37%), Positives = 240/419 (57%), Gaps = 6/419 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +    +  + K+L E   D +INE+  SGLRGRGGA
Sbjct: 138 FYQKQRRIVLKNCGMIDPENIDEYIGNDGYKALSKVLFEMTPDDVINEMHTSGLRGRGGA 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KWSF  +V SD   Y+V NADE +PG   DR I+  +PH++IE   IA + IGA
Sbjct: 198 GFPTWKKWSFTKEVKSD-QKYIVCNADEGDPGAYMDRSILEGDPHSVIEAMTIAGYTIGA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++Y+R E+    E ++ A+ + Y  GLLG       +  D+ +  GAGA++CGEETA
Sbjct: 257 NKGYLYIRAEYGLAVERVRIALKQAYDYGLLGEKILGSDFSFDLDIRLGAGAFVCGEETA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG +G PR +PPFPA  GL+  PT +NNVE+ A V  I+  G  W++  G EN+ 
Sbjct: 317 LLASIEGNRGTPRPRPPFPAIKGLFEKPTVINNVETFANVTAIINNGGDWFASIGTENST 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G+VN    VE  M  T  E++    GGI      +  V  GG S   LP   
Sbjct: 377 GTKVFALTGNVNVSGLVEVPMGTTIREIVFDIGGGIPND-KFVKGVQTGGPSGGILPES- 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           + G  +D+D L ++GS +G+  +IV+D  ++++        F   ESCG+C PCR G   
Sbjct: 435 LFGTRIDFDNLVKLGSMMGSGGMIVIDEDSNMVDFAKFYLGFCVDESCGKCVPCRVGGMQ 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M++++E+  K  A++ +I  L +++  +   ++CALG  AA P+   +K+F    +  I
Sbjct: 495 MLKILEKFTKKRAKEDDIQKLRDIALTMRKASLCALGSTAANPVMSTLKHFEEEYKAGI 553


>gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium
           enrichment culture clone BF]
          Length = 597

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + + ++R  ++ + K+L       +I ++K +GLRGRGG 
Sbjct: 111 FYAKQQRVALRNCGHINPEYIQEYIARDGYEALAKVLTTMTPAQVIEDMKIAGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K       Y++ NADE +PG   DR ++  +PH+++EG +IA++AIGA
Sbjct: 171 GFPTGLKWDFASKSPGP-KKYIICNADEGDPGAFMDRSVLEGDPHSVLEGMMIAAYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    GLLG N    G++  + +  GAGA++CGEETA
Sbjct: 230 DEGYIYVRAEYPLAIKRLKVAIAQAEELGLLGENIMGSGFNCTLHIKEGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G P  +PPFPA  GL+  P+ +NNVE+ A VP I   GA  Y+  G E ++
Sbjct: 290 LMASIEGSRGMPNPRPPFPAVKGLWEKPSNINNVETFANVPVIYLNGAEKYASVGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V      E  M IT  E+I    GGI        AV  GG S  C+P  Q
Sbjct: 350 GTKVFALTGKVRNTGLAEVPMGITLREIIFDIGGGI-MDDKKFKAVQIGGPSGGCIP-EQ 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD L  +G+ +G+  ++VMD ++ ++        F + ESCG+C PCREGT  
Sbjct: 408 HLDTPVDYDSLIALGAMMGSGGLVVMDETSCMVDVARFFLNFTQKESCGKCIPCREGTMR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G     +I  L  +   I+   +CALG +A  PI   ++ FR   E  I 
Sbjct: 468 MLEILEKICAGKGVPEDITTLETLGAAIKNTALCALGQSAPNPILSTLRYFRHEYEAHI- 526

Query: 418 QYHRCN 423
              +C 
Sbjct: 527 HDKKCP 532


>gi|326201302|ref|ZP_08191174.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325988870|gb|EGD49694.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 623

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 157/425 (36%), Positives = 241/425 (56%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  +S ++ +++G +  + K+L +     +   +  S LRGRGG 
Sbjct: 137 FYKKQTRMVLKNCGSINAESFAEYVAKGGYQALGKVLFDMEPQEVCQSILDSNLRGRGGG 196

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+  G KW  + K  S +  Y+V N DE +PG   DR IM  +PH +IEG  IA +A  +
Sbjct: 197 GYPAGRKWQQVLKQDS-KIKYVVCNGDEGDPGAFMDRSIMEGDPHGVIEGMTIAGYATKS 255

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L+ A+++    G+LG N    G+  DI ++ GAGA++CGE +A
Sbjct: 256 TSGYIYVRAEYPLAVERLRIAIEDARKHGMLGENILNSGFSFDININKGAGAFVCGEGSA 315

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG++G PR+KPP     GL+  PT +NNVE+ A VP+I+  G+ WY G G EN+ 
Sbjct: 316 LTASIEGERGMPRVKPPRTVEKGLWEKPTVLNNVETYANVPSIIINGSEWYKGIGPENSP 375

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+I+G+VN    +E  M  T  E+I    GGI+       AV  GG S  CL    
Sbjct: 376 GTKAFAITGNVNNTGLIEVPMGTTLREVIFDIGGGIKDN-KKFKAVQIGGPSGGCLTEEH 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK++G+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  
Sbjct: 435 LE-LPLDFDSLKKVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTKR 493

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++V G   K ++DLL E++  I    +C LG +AA P+   +K FR    E + 
Sbjct: 494 MLEILEKIVNGKGTKEDLDLLEELADTISSTALCGLGKSAASPVVSTLKYFRDEYLEHVI 553

Query: 418 QYHRC 422
              +C
Sbjct: 554 D-KKC 557


>gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. SR1/5]
          Length = 623

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 154/425 (36%), Positives = 243/425 (57%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            L  Q RI   N   +  +S+ + +S G +  + K   E     +I+E+  SGLRGRGGA
Sbjct: 136 FLNQQTRIVLENCGKIDAESIDEYISVGGFSAMAKAFFEMTPQGVIDEISKSGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS + +  S++  Y+V N DE +PG   D  +M  +P+ +IEG VIA++A+GA
Sbjct: 196 GFPAGKKWSQVARQ-SEKVRYVVCNGDEGDPGAFMDGSVMEGDPYKMIEGMVIAAYAVGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++  + GLLG N    G +  + ++ GAGA++CGE +A
Sbjct: 255 EDGYIYVRAEYPLSVQRLRMAIEQAESYGLLGDNILGSGINFHLHINRGAGAFVCGEGSA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+G PT +NNVE+ A VP I+ +GA W+   G E + 
Sbjct: 315 LTASIEGNRGMPRVKPPRTVEQGLWGKPTVLNNVETYANVPKIILQGADWFHTIGTEGSP 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FS++G +     +E  M  +   +I    GG++ G      V  GG S  CL   Q
Sbjct: 375 GTKTFSLTGSIENTGLIEVPMGTSLRHIIYDIGGGLKSGA-AFKGVQIGGPSGGCLIDDQ 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D +K++ + +G+  ++VMD +T +++       F + ESCG+C PCREGT  
Sbjct: 434 I-DHPLDFDSVKKLDAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  +  ++D L E++  ++   +C LG +A  P+   +K FR    E I 
Sbjct: 493 MLEILERIVAGKGELSDLDELEELANMVQSMALCGLGKSAPLPVISTLKRFRDEYVEHIV 552

Query: 418 QYHRC 422
              +C
Sbjct: 553 D-KKC 556


>gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
 gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
          Length = 640

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 151/423 (35%), Positives = 232/423 (54%), Gaps = 6/423 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q+R +  +   +  +++ D + RG +  + K L +   + ++ EV  + LRGRGG 
Sbjct: 131 FYKYQERTVLGDNEHINPQNIEDYIQRGGYSALVKALFQMTPESVLEEVDTANLRGRGGD 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW        D   Y++VN DE +PG   DR IM   PH ++EG  I +FA+GA
Sbjct: 191 GFPAGKKWRTTRDAP-DPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAVGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E+L AA+ +    GLLG N    G+D  + VH GAGA++ GE +A
Sbjct: 250 KEGYIYVRAEYPLAVENLYAAIRQAEEYGLLGKNILGSGFDFIVKVHEGAGAFVSGESSA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ ++EG+ G+PR K    A  GL+  P+ +NNVE+ A VP I+ +GA W+   G E ++
Sbjct: 310 LMTAIEGRVGEPRPKYIRTAIKGLWDKPSNLNNVETWANVPHIINKGAEWFRSIGTEGSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    VE  M  T  ++I K  GG+R     + AV  GG S  C+P   
Sbjct: 370 GTKIFALVGKVNNTGLVEVPMGTTLRDIIFKIGGGLR-DGKKIKAVQTGGPSGGCIP-EN 427

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  + +DYD L ++GS +G+  +I+MD  T ++        F   ESCG+C PCREG   
Sbjct: 428 LLDSPVDYDVLSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQ 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ R+ +G     ++D L ++S  +    +CALG  A  P+   +K FR    + I 
Sbjct: 488 LVEILTRITEGKGTMADMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIK 547

Query: 418 QYH 420
             H
Sbjct: 548 NKH 550


>gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 631

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +    +  + K+L E   D +I  +  SGLRGRGG 
Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW F     SD   Y++ NADE +PG   DR I+  +PH++IE   IA +AIGA
Sbjct: 206 GFPTGKKWGFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+      L+ A+D+    GLLG N    G++ +I + +GAGA++CGEETA
Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKEYGLLGENILNTGFNFNIEIKYGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P I+  GA+WY   G E + 
Sbjct: 325 LIHSIEGERGEPTYKPPFPAESGLWNKPTVVNNVETLANIPAIINNGANWYKSIGTEKSN 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  +  E+I    GGI+       AV  GG S  C+PA  
Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTSLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++  + ++  G   + +++ L E+S  I+  ++C LG  A  P+   ++ F    E  ++
Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVN 562

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 563 E-KRCP 567


>gi|226939461|ref|YP_002794534.1| NuoF [Laribacter hongkongensis HLHK9]
 gi|226714387|gb|ACO73525.1| NuoF [Laribacter hongkongensis HLHK9]
          Length = 431

 Score =  492 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 208/410 (50%), Positives = 263/410 (64%), Gaps = 7/410 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
               L   + RG +  + KI+  +  ++ +I EVK S LRGRGGAGF TG+KWSFMP+  
Sbjct: 19  NCWKLDAYVKRGGYQALKKIIGNKIPQEDVIAEVKGSNLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                YLV N DE EPGT KDRDI R  PH LIEG +IA++A+G    + Y+ GE   E 
Sbjct: 79  PG-DKYLVCNTDEGEPGTFKDRDIHRFNPHALIEGMIIAAYAMGVKRGYNYIHGEIFEEY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  + A+DE   +GLLG++     +  D+  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEEALDEARRAGLLGNSILDSEFSFDLFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN ES A VP I+R G   +   G+ NN GTKLFS+SGHVN P 
Sbjct: 198 PPFPASFGLYGKPTTINNTESFASVPFIIRDGGQSFLEKGKPNNGGTKLFSVSGHVNRPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F EL+E   G        L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NFEVPLGTPFAELLEMAGGM--KDGKKLKAVIPGGSSAPVLPADIMMDCTMDYDSIAKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVIVM+    ++KA+ RL+ FY  ESCGQCTPCREGTGW+ R++ R+  G  + 
Sbjct: 316 SMLGSGAVIVMNEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYRIIHRIEHGEGRP 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            ++DLL  V  N+ GRTICAL DAA +P++   K+FR   E  I ++ +C
Sbjct: 376 EDLDLLASVGNNMAGRTICALADAAVFPVRSFTKHFRNEFEYHI-EHKKC 424


>gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
 gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
          Length = 598

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 158/423 (37%), Positives = 243/423 (57%), Gaps = 6/423 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61
             Q  + +N   +  +S+ + +++  +  V ++L       +I+E+K SGLRGRGG GF 
Sbjct: 116 KQQRVVLSNCGKINPESIEEYIAQDGYQAVGEVLTTMEPQEVIDEIKKSGLRGRGGGGFP 175

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW F      D   Y++ NADE +PG   DR ++  +PH L+EG +IA +AIGA   
Sbjct: 176 TGVKWQFAYDAEGD-KKYIICNADEGDPGAFMDRSLLEGDPHKLLEGMIIAGYAIGADEG 234

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+    E L+ A+D+    GLLG N     +  D+ +  GAGA++CGEETAL+ 
Sbjct: 235 YIYVRAEYPLAIERLEKAIDQANEHGLLGENLFGTDFSFDLQIKAGAGAFVCGEETALMA 294

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G PR +PPFPA  GL+G PT +NNVE+   VP I+  GA  +S  G E+++GTK
Sbjct: 295 SIEGERGMPRPRPPFPAQKGLWGKPTNINNVETYGNVPEIINNGAEAFSEIGTEDSKGTK 354

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +N     E  M IT  E+     GG      +  AV  GG S  CLP  ++  
Sbjct: 355 VFALTGKINNTGLAEVPMGITMREI-IDDIGGGIDEGKDFKAVQIGGPSGGCLPEEKL-D 412

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DYD L + G+ +G+  ++VMD  T ++        F   ESCG+CTPCREGT  M+ 
Sbjct: 413 LPIDYDSLLDAGAMMGSGGLVVMDEDTCMVDVARFFLNFTVSESCGKCTPCREGTKRMLE 472

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++E++  G     +ID L  +++ I+  ++C LG  A  P+   ++ FR   E  +++  
Sbjct: 473 ILEKITDGEGTLADIDKLESLAETIKTASLCGLGQTAPNPVLSTLRYFRDEYEAHVEE-Q 531

Query: 421 RCN 423
            C 
Sbjct: 532 TCP 534


>gi|303245642|ref|ZP_07331925.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492905|gb|EFL52770.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 491

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 153/425 (36%), Positives = 234/425 (55%), Gaps = 6/425 (1%)

Query: 3   TDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
             Q RI T N   +  +S+ D ++   ++ + K+L      +++ VK SGLRGRGGAGF 
Sbjct: 8   KKQLRIATRNCGFIDPESIDDYIALRGYEGLAKVLTMTPAEVVDLVKRSGLRGRGGAGFP 67

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW       +D   Y+V NADE +PG   DR ++  +PH+++E   I  +AIGA   
Sbjct: 68  TGIKWGIALGNKAD-QKYMVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATRG 126

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            +Y+R E+    + L+ A+D+    GLLG N    G+D DI + +GAGA++CGEETAL+ 
Sbjct: 127 TVYIRAEYPLAIKRLKKAIDDAREYGLLGENIFGSGFDFDIELKYGAGAFVCGEETALIR 186

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+P  KPPFPA  G +  PT VNNVE+ A +P I+  GA W+SG G   ++GTK
Sbjct: 187 SMEGKRGEPVTKPPFPAQSGYWEKPTIVNNVETFANIPAIIINGADWFSGIGTATSKGTK 246

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +     +E  M I+  E+I    GG         AV  GG S   L A +   
Sbjct: 247 VFALAGKIQNVGLIEVPMGISLREVIFDIGGGCP-DGKAFKAVQTGGPSGGAL-ANKDLD 304

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+ L    S +G+  ++VMD    ++        F   E+CG+CTPCR G+  +  
Sbjct: 305 VAIDYESLAACKSIMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYE 364

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R+ KG   + ++D L  +S+ I+   +C LG     PI   +  F    E  +D   
Sbjct: 365 ILDRITKGKGTRADLDRLKSLSEIIKDTALCGLGQTMPNPILSTMDTFANEYEAHVDD-K 423

Query: 421 RCNFQ 425
           +C   
Sbjct: 424 KCPAH 428


>gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
          Length = 597

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 152/425 (35%), Positives = 232/425 (54%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ ++++R  +  + K L E   + ++ E+K SGLRGRGGA
Sbjct: 110 FYKKQLRIALRNCGFIDPENIEEAIARDGYAALGKCLTEMTPEQVVAEIKKSGLRGRGGA 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K       Y+V NADE +PG   DR ++  +PH+++E   I  + IGA
Sbjct: 170 GFPTGLKWEIAAKSRPGEQKYVVCNADEGDPGAFMDRSLLEGDPHSILEAMAICGYCIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+      LQ A+ +    GLLG +    G++ +I + +GAGA++CGEETA
Sbjct: 230 DKGLIYIRAEYPLAIHRLQVAIQQAEEYGLLGKDILGTGFNFEIELRYGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P  KPPFPA  G  G PT VNNVE+ A +P I+ +GA W++  G E ++
Sbjct: 290 LIHSMEGKRGEPTFKPPFPAQSGYLGKPTNVNNVETYANIPVIINKGADWFASIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M IT  E+     GG   G     AV  GG S  CL    
Sbjct: 350 GTKVFALAGKINNVGLIEVPMGITLREI-IYEIGGGIKGGKKFKAVQTGGPSGGCLTEKH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 409 L-DTPIDYDSLVAAGSMMGSGGMIVMDEDDCMVAIAKFYLGFTVDESCGKCTPCRVGNRR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++  G     +++ L  +S  I+   +C LG  +  P+   I NF     E + 
Sbjct: 468 LLEILTKITDGNGTMEDLEELKNLSAVIKDTALCGLGQTSPNPVLSTINNFWDEYVEHVT 527

Query: 418 QYHRC 422
           +  +C
Sbjct: 528 E-KKC 531


>gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
 gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
          Length = 631

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 161/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +    +  + K+L E   D +I  +  SGLRGRGG 
Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG KWSF     SD   Y++ NADE +PG   DR I+  +PH++IE   IA +AIGA
Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+      L+ A+D+    GLLG N    G++ +I + +GAGA++CGEETA
Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P I+ RGA WY   G E + 
Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINRGADWYKSIGTEKSN 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I    GGI+       AV  GG S  C+PA  
Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++  + ++  G   + +++ L E+S  I+  ++C LG  A  P+   ++ F    E  ++
Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFIDEYEAHVN 562

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 563 E-KRCP 567


>gi|77920299|ref|YP_358114.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77546382|gb|ABA89944.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 488

 Score =  492 bits (1267), Expect = e-137,   Method: Composition-based stats.
 Identities = 153/424 (36%), Positives = 237/424 (55%), Gaps = 7/424 (1%)

Query: 3   TDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
             Q RI T   G +  + +   ++ G +  + + L +     +I+E+  SGLRGRGGAGF
Sbjct: 4   KKQLRIATRNSGFIDPEKVDAYIAVGGYQAIGRCLNDMTPSQVIDEMTRSGLRGRGGAGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  K  SD   Y+V NADE +PG   DR ++  +PH+++EG ++A +A+GA+ 
Sbjct: 64  PTGVKWGFAAKYESD-TKYIVCNADEGDPGAFMDRAVLEGDPHSVLEGMLVAGYAVGANH 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
             IY+R E+    + L+ A+ +  A GLLG +     +  DI + +GAGA++CGEETAL+
Sbjct: 123 GVIYIRAEYPLAIKRLRTAIKQASAYGLLGEHILGSDFSFDIELKYGAGAFVCGEETALI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S++G +G+P  KPPFPA  G +G PT VNNVE++A VP I+ +GA W+S  G    +GT
Sbjct: 183 RSIQGNRGEPYTKPPFPAESGYWGKPTIVNNVETLANVPAIMMKGADWFSSIGSPTAKGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS+ G +     +E  M IT  E++    GG   G     AV  GG S   L    + 
Sbjct: 243 KVFSLVGKITNVGLIEVPMGITLREVVFDIGGGCP-GGKKFKAVQTGGPSGGVLTYKDL- 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A +DY+ L    S +G+  +IVMD    ++        F   ESCG+CTPCR G+  + 
Sbjct: 301 DAPIDYENLAARESIMGSGGMIVMDEDACMVAIAKFFLQFTMDESCGKCTPCRVGSKRLW 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            +++++  G A + +++ L  +++ I+   +C LG     PI   ++ FR      I + 
Sbjct: 361 ELLDKITLGQATEDDLETLVTLARTIKDTALCGLGQTMPNPILSTVRVFRDEYLAHIKE- 419

Query: 420 HRCN 423
            RC 
Sbjct: 420 KRCP 423


>gi|116750139|ref|YP_846826.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116699203|gb|ABK18391.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 552

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 152/425 (35%), Positives = 238/425 (56%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
            +  +  +  +   +  + L   ++RG +  +   L E   + +  E+  SG+RGRGGAG
Sbjct: 121 FVKQKKIVLADSGTVDPEKLESYVARGGYTALGHALREMTPEEVCEEIARSGIRGRGGAG 180

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           + +G+KW  + K   +   Y+V N DE +PG   DR +M  +PH ++EG  IA +A+GA 
Sbjct: 181 YPSGLKWHMVRKAPGE-KKYVVANGDEGDPGAYMDRTLMESDPHRVLEGMAIAGYAVGAD 239

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVRGE+    + L+ A+      GLLGS      +   I +  GAGA++CGEETAL
Sbjct: 240 QGYIYVRGEYPLAAKRLEKAIRAAERRGLLGSRVLDSNFSFRIDIRMGAGAFVCGEETAL 299

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+ G++GQP  +PP+PAN GL+G PT +NNVE+   +  I+  GA WY+ FG E ++G
Sbjct: 300 MASIMGRRGQPVPRPPYPANKGLWGGPTLINNVETFGNIAAIIGNGAEWYASFGTEKSKG 359

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
            K+F+++G VN    +E  + IT  E++    GGI GG     A   GG S  C+PA  +
Sbjct: 360 AKIFALAGKVNNTGLIEVPIGITLREIVYDIGGGIPGG-RAFKAAQTGGPSGGCIPAEYL 418

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ L+++GS +G+  +IVMD  + +         F   ESCG+CTPCR GT  M
Sbjct: 419 -DTPIDYETLQKLGSIMGSGGLIVMDDQSCMPDVAKFFMEFCMDESCGKCTPCRVGTVQM 477

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R+++++  G A   ++  L E+   ++  ++C LG  A  PI   ++ FR   E  I  
Sbjct: 478 HRMLDKITNGTATMDDLKRLEELCLMVKESSLCGLGQTAPNPIYSTLRYFRDEYEAHIKD 537

Query: 419 YHRCN 423
           +H C 
Sbjct: 538 HH-CP 541


>gi|257066578|ref|YP_003152834.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
 gi|256798458|gb|ACV29113.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
          Length = 526

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 148/426 (34%), Positives = 233/426 (54%), Gaps = 6/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R +  N   +   S+ D +    +  + K + E  R  II+ VK SGLRGRGGA
Sbjct: 40  FFENQKRLVLKNCGIIDPSSIEDYIGLDGYKALYKAIFELDRKEIIDIVKDSGLRGRGGA 99

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW       +D   Y++ NADE +PG   DR ++  +PH+++E   I + AIG+
Sbjct: 100 GFPTGRKWEAAFLQDTDI-KYIICNADEGDPGAFMDRSVLELDPHSVLEAMAICARAIGS 158

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  FIYVR E+ +   +L+ A+D+     LLG N     +  DI +  GAGA++CGE TA
Sbjct: 159 NKGFIYVRAEYPKAVRALEIAIDQAKKYNLLGDNILGSDFSFDIELRLGAGAFVCGEGTA 218

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EG++G PR K       GL+G PT +NNVE+ A +  I+ +G++W+  FG E + 
Sbjct: 219 LMESIEGRRGMPRNKEYRTTVRGLWGKPTVINNVETFANIAQIINKGSAWFRSFGTEKSP 278

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++SG V     VE  M  + D+++     GI+   D   AV  GG S  C+P  +
Sbjct: 279 GTKVFALSGKVKNAGLVEVEMGTSIDQIVYDIGKGIQNDKDA-KAVQTGGPSGGCIPK-R 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +     D++ L  +GS +G+  ++VMD    ++        F   ESCG+CTPCR G   
Sbjct: 337 LFDTACDFESLGAIGSIMGSGGMVVMDEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKR 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++ + KG A    +D L E+S+ +   ++C LG ++  PI   ++ F    E  ++
Sbjct: 397 LFEMLDDITKGKANHETLDKLEELSEIVSEASLCGLGKSSPNPIISTMRYFYDEYEAHVN 456

Query: 418 QYHRCN 423
           +   C 
Sbjct: 457 ENKTCP 462


>gi|312793480|ref|YP_004026403.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180620|gb|ADQ40790.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 598

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG 
Sbjct: 111 FYKKQMRIALRNCGVINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+
Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + L+ A+++    GLLG N     ++ DI +  GAGA++CGEETA
Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAIEQARQYGLLGKNILGTDFEFDIEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++
Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    +E  M  T  E++E   G    G     AV  GG S  C+PA  
Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G   + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + 
Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|116750130|ref|YP_846817.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116699194|gb|ABK18382.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 603

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 160/425 (37%), Positives = 242/425 (56%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
             + Q RI   N   +  + + D ++ G +  + K L   R  +INE+K SGLRGRGG G
Sbjct: 120 FFSPQRRIVLKNCGFINPEDIDDYIAVGGYQGIQKALGGSRMDVINEIKKSGLRGRGGGG 179

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TGMKW F      D   YL+ NADE +PG   DR ++  +PH ++EG +IA++AIGA 
Sbjct: 180 FPTGMKWEFCHNSPGD-QKYLICNADEGDPGAFMDRAVLEGDPHAVLEGMMIAAYAIGAS 238

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY R E+    E    A+D+    G LG        D +I +  GAGA++CGEETAL
Sbjct: 239 KAYIYCRAEYPMAYERSMIAIDQATKRGFLGKKIFGSDMDFEIKLKLGAGAFVCGEETAL 298

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G P  +PPFPA  GL+G PT +NNVE+   + TI+ +G  W++  G E ++G
Sbjct: 299 MASIEGKRGMPMPRPPFPAVKGLFGKPTNINNVETFGNIATIMTKGGDWFASVGTEKSKG 358

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G ++Y   VE  M     E+I++  GGI        A   GG S  C+P+   
Sbjct: 359 TKVFALAGKISYSGLVEIPMGTPLREIIDEIGGGIPNKRK-FKAAQTGGPSGGCIPSEH- 416

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDY+ L ++GS +G+  +IV D +T ++        F + ESCG+C PCR GT  M
Sbjct: 417 FDIPMDYENLTQVGSIMGSGGLIVTDETTCMVDMAKFFLGFTQKESCGKCVPCRLGTKKM 476

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + V+  + KG A   +++ L E++++++G ++C LG  A  P+   ++ FR   E  I +
Sbjct: 477 LEVLGDISKGKATMEDLEQLLELAQDVKGGSLCGLGQTAPNPVLSTVRYFRDEYEAHILR 536

Query: 419 YHRCN 423
              C 
Sbjct: 537 -KECP 540


>gi|302871901|ref|YP_003840537.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574760|gb|ADL42551.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 598

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG 
Sbjct: 111 FYKKQMRIALRNCGLINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+
Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + L+ A+++    GLLG N     ++ DI +  GAGA++CGEETA
Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAINQAREYGLLGKNILGTDFEFDIEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++
Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    +E  M  T  E++E   G    G     AV  GG S  C+PA  
Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G   + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + 
Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|291285962|ref|YP_003502778.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
 gi|290883122|gb|ADD66822.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
          Length = 597

 Score =  492 bits (1266), Expect = e-137,   Method: Composition-based stats.
 Identities = 163/425 (38%), Positives = 242/425 (56%), Gaps = 5/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q R +  +   +  +SL D +  G ++ + K +    + +I EVKASGLRGRGG G
Sbjct: 113 FYDKQKRYVLHDCGRVDPESLEDYVKLGGYEAIKKAITMKPEEVIEEVKASGLRGRGGGG 172

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW+F     ++   YL+ NADE +PG   DR I+   PH +IEG +IA +AIG  
Sbjct: 173 FPTGLKWTFCRGAKTEDHKYLICNADEGDPGAFMDRSIIEGNPHAVIEGMLIAGYAIGCD 232

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+    E +  A+ +  A+G LG       Y+  + +  GAGA++CGEETAL
Sbjct: 233 EGYIYCRAEYPLAIERVIKAIKDAEAAGYLGKGVFSSDYNFKLKLKEGAGAFVCGEETAL 292

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG++G PR +PPFPA  GL+  P+ VNNVE+ A +P I+ +G+ WYSG G E ++G
Sbjct: 293 IASIEGERGMPRPRPPFPAVRGLWQKPSNVNNVETFANLPNIILKGSGWYSGIGTEKSKG 352

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F++SG +     VE  M IT  ELI    GGI        AV  GG S  CL    +
Sbjct: 353 TKIFALSGKIKSSGLVEVPMGITVRELIFDVGGGIPKKRK-FKAVQLGGPSGGCLTPDHL 411

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L   G+ +G+  V+VMD +  ++        F + ESCG+C PCR GT  M
Sbjct: 412 E-TPIDYDSLIAAGAMMGSGGVVVMDETNCMVNVAQFFLTFTQRESCGKCIPCRIGTKTM 470

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +++R+  G  ++ +I+LL ++ ++I+  ++C LG  A  P+   IK FR   E  I  
Sbjct: 471 LDILDRITTGKGREGDIELLQQIGEDIKTSSLCGLGQTAPNPVLTTIKYFRHEYEAHIKD 530

Query: 419 YHRCN 423
             +C 
Sbjct: 531 -KKCP 534


>gi|206900196|ref|YP_002251393.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
 gi|206739299|gb|ACI18357.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
          Length = 545

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 168/427 (39%), Positives = 247/427 (57%), Gaps = 10/427 (2%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
             Q RI   N   +  +S+ + +++G ++ + K L E   + +I E+KASGLRGRGGAGF
Sbjct: 112 RKQVRIVLRNSGVINPESIEEYIAQGGFEGLSKALSEMTPENVIKEIKASGLRGRGGAGF 171

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW F  KV SD   Y+V NADE EPGT KDR I+  +P  ++E   IA +AIGA  
Sbjct: 172 PAGLKWEFTYKVPSD-EKYVVCNADEGEPGTFKDRLILEGDPFRIVEAMAIAGYAIGAKK 230

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+RGE+    + +Q A++     GLLG N     +  D+ V  GAGAYICGEETAL+
Sbjct: 231 GYIYIRGEYKLSIDRMQKAINVAKEYGLLGDNILGTNFSFDLEVRKGAGAYICGEETALI 290

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR+KPP+P + GL   PT VNNVE++A VP I++ GA W+  FG E+  GT
Sbjct: 291 ESLEGKRGIPRIKPPYPVSQGLRNKPTLVNNVETLANVPDIIKNGAQWFRQFGTESCPGT 350

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+++I G V     +E  M     ++I ++ GGI+         + GG++   L   +M 
Sbjct: 351 KVYTILGDVVNAGLIEVEMGTPLRDIIFQYGGGIK-DGKKFKCALVGGAAGAFL-GNEML 408

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D LKE  + LG+ A++VM     I+  +  +  F+KHESCG+CTPCR GT  ++
Sbjct: 409 DVKMDFDNLKEYKAVLGSGAILVMSDGVCIVDMLKSILRFFKHESCGRCTPCRVGTKRLV 468

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++E+       + ++D +  +S  ++  + C LG +   P+   IK FR          
Sbjct: 469 EIIEKFASLEGTEEDLDEMLNISLVMKDTSFCPLGQSVYLPVSSAIKYFRDEFISHFKDK 528

Query: 420 H----RC 422
           +    RC
Sbjct: 529 YCVSGRC 535


>gi|91203805|emb|CAJ71458.1| similar to NADH:ubiquinone oxidoreductase 51 kDa subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 594

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 150/423 (35%), Positives = 237/423 (56%), Gaps = 6/423 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +I   N   +    ++  + +G ++ V K+L       +I E+K SGLRGRGGA
Sbjct: 108 FRQKQHKIVLENCGIIDPDDIAPYIKKGGYEAVKKVLGTMSPQQVIEEIKTSGLRGRGGA 167

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      +   Y++ NADE +PG   DR ++  +PH +IEG +I  +AIGA
Sbjct: 168 GFPTGLKWQFARNSTGE-KKYMICNADEGDPGAFMDRAVLEGDPHKVIEGLIIGGYAIGA 226

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + L+ A+ +     LLG N     +   + +  GAGA++CGEETA
Sbjct: 227 EHGYVYVRAEYPLAIKRLKLAISQATEKNLLGHNILNSEFSFHLKIKEGAGAFVCGEETA 286

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PRLKPPFPA  GL+G PT +NNVE++A VP I+  GA  Y+ +G E ++
Sbjct: 287 LIASIEGERGHPRLKPPFPAGSGLWGYPTNINNVETLASVPWIINNGAKIYASYGTEKSK 346

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E  M     ++I    GG         AV  GG S  C+P  +
Sbjct: 347 GTKVFSLAGKIARGGLIEVDMGTPLRDIIYTIGGGT-SSGKPFKAVQLGGPSGGCVP-ER 404

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ +   G+ +G+  ++VMD  T I+        F ++ESCG+CT CR GT  
Sbjct: 405 LLDTPVDYESISVTGAIMGSGGMVVMDDDTCIVDVAKFFLTFTQNESCGKCTFCRIGTKR 464

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++E++ +G     ++D L  +S+ ++  ++C LG  A  PI   +K F+    E I 
Sbjct: 465 LLEILEKITEGRGGMADLDELESLSEKVKDLSLCGLGKTAPNPIMTTLKYFKDEYVEHIK 524

Query: 418 QYH 420
           +  
Sbjct: 525 ENK 527


>gi|312876005|ref|ZP_07735994.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311797203|gb|EFR13543.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 598

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG 
Sbjct: 111 FYKKQMRIALRNCGVINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+
Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + L+ A+++    GLLG N     ++ DI +  GAGA++CGEETA
Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAIEQARQYGLLGKNILGTDFEFDIEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++
Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    +E  M  T  E++E   G    G     AV  GG S  C+PA  
Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G   + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + 
Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|152980581|ref|YP_001353157.1| NADH dehydrogenase I chain F [Janthinobacterium sp. Marseille]
 gi|151280658|gb|ABR89068.1| NADH dehydrogenase I chain F [Janthinobacterium sp. Marseille]
          Length = 431

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 207/416 (49%), Positives = 270/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMK 65
           IF  L G     L + + RG + ++ +IL      + +I EVKAS LRGRGGAGF +G+K
Sbjct: 13  IFAGLTG-DNWGLEEYVKRGGYASLKRILSEGMTPEQVIAEVKASTLRGRGGAGFPSGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK  +    YLV N+DE EPGT KDRDI+R+ PH++IEG  IA++A+G    + Y+
Sbjct: 72  WSFMPKNFAG-QKYLVCNSDEGEPGTFKDRDILRYNPHSVIEGMTIAAYAMGVSVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE   E +  + A+++  A+G LG N     +   +   HG GAYICGEETALLESLEG
Sbjct: 131 HGEIFAEYDRFEEALEQARAAGFLGDNILGSTHSFQLHAFHGFGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I + GA  Y+  G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASYGLYGKPTTINNTETFAAVPFIFQVGAEAYAAIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F EL++   G    G   L AVIPGGSSVP +    M    MD
Sbjct: 251 SGDVENPGNYEIPLGTPFAELLKLAGG--VRGGKKLKAVIPGGSSVPVVKGDLMMATDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 309 YDSVAKAGSMLGSGAVIVMDETRCMVKALLRLSYFYYEESCGQCTPCREGTGWLYRMVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  +  ++D+L  V+ NI+GRTICALGDAAA P++ +I+ FR      I+  H
Sbjct: 369 IENGQGRPEDLDMLNSVADNIQGRTICALGDAAAMPVRAMIQQFREEFVYHIEHKH 424


>gi|254496126|ref|ZP_05109025.1| NADH dehydrogenase I, F subunit [Legionella drancourtii LLAP12]
 gi|254354667|gb|EET13303.1| NADH dehydrogenase I, F subunit [Legionella drancourtii LLAP12]
          Length = 428

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 213/415 (51%), Positives = 275/415 (66%), Gaps = 6/415 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  ++  +  +LS   S G +    KIL++      II+E+K S LRGRGGAGF TG+KW
Sbjct: 12  YRTVHLPEPWTLSAYESVGGYSAWRKILKEQTSPQLIIDELKTSALRGRGGAGFPTGLKW 71

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFM +  S    Y+V N+DE EPGTCKDR+I+   PH LIEG  IA + +G+   + Y+R
Sbjct: 72  SFMNRN-SPVQKYVVCNSDEGEPGTCKDREILALNPHQLIEGMAIAGYVMGSSVGYNYIR 130

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF    E  +AA+ E YA+GLLG N    G D D+  H GAGAYICGEETALL SLEGK
Sbjct: 131 GEFWLPYERTEAALKEAYAAGLLGKNILGSGVDFDLYNHLGAGAYICGEETALLNSLEGK 190

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPAN GLYG PTT+NN E+ A VP I+ +G  W+   G+ NN GTK FS+S
Sbjct: 191 KGQPRFKPPFPANYGLYGKPTTINNTETFASVPVIMEKGGEWFLKLGKPNNGGTKCFSVS 250

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHVN P   E  +   F  L+E   G    G   + AVIPGGSS+P LP   M G  MDY
Sbjct: 251 GHVNKPGNFEIPLGTPFKTLLELAGG--VKGDRRIKAVIPGGSSMPVLPGDVMMGLDMDY 308

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D +++ GSGLG+ AVI+MD +T ++ A++R+S FY  ESCGQCTPCREGTGW++R++ R+
Sbjct: 309 DSIQKAGSGLGSGAVIIMDETTCMVDALYRISEFYMDESCGQCTPCREGTGWLVRLLHRI 368

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +G  +  +I+ L  V+ NIEGRTICALG+AAAWP+Q  +K+F    +  I    
Sbjct: 369 KEGHGEPGDIEKLVNVADNIEGRTICALGEAAAWPVQSFVKHFYNEFDYFIKHKR 423


>gi|88608878|ref|YP_506590.1| NADH dehydrogenase I subunit F [Neorickettsia sennetsu str.
           Miyayama]
 gi|88601047|gb|ABD46515.1| NADH dehydrogenase I, F subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 413

 Score =  491 bits (1265), Expect = e-137,   Method: Composition-based stats.
 Identities = 250/416 (60%), Positives = 309/416 (74%), Gaps = 7/416 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +DRIF+N+   +G +LS+++ RG W +  K L+K  +WI+ E+K SGLRGRGGAGF
Sbjct: 1   MLKPEDRIFSNIQKREGITLSEALRRGDWKDTKKFLDKEPEWIVEEIKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   + +P YLVVNADESEPGTCKDRDI+R EPH LIEG V+AS A+   
Sbjct: 61  PTGIKWSFMPKEKEAGKPSYLVVNADESEPGTCKDRDIIRFEPHKLIEGIVLASHAMRID 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            ++IY+RGEF  E   L+  + E   + L+    K      I VH GAGAYICGEETALL
Sbjct: 121 VSYIYIRGEFYNESLVLEKVIQEAMDAHLIPEQLK------IFVHRGAGAYICGEETALL 174

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR+KPPFPA  GLYG PTT+NNVESIA VPTIL RG+ W++  G +N+ GT
Sbjct: 175 ESLEGKRGMPRMKPPFPAGCGLYGKPTTINNVESIASVPTILSRGSDWFANLGVKNSCGT 234

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE++ I    LIE++ GG+ GGWDNLLAVIPGGSSVP +      
Sbjct: 235 KIFCISGHVNKPCNVEEALGIPLKFLIEEYAGGVIGGWDNLLAVIPGGSSVPMITKEVAE 294

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +GS LGT  +IVM++ TDII+AI RLS FY HESCGQCTPCREGTGW+ 
Sbjct: 295 TVTMDFDSLRAVGSSLGTGGIIVMNKETDIIRAIERLSHFYMHESCGQCTPCREGTGWLW 354

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            +M++L +G  +K ++D L +++K IEG TICALGDAAAWPIQGLIKNFR  IE R
Sbjct: 355 SIMKQLSEGKGKKSDVDFLLQLTKQIEGNTICALGDAAAWPIQGLIKNFRDEIEAR 410


>gi|312127640|ref|YP_003992514.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777659|gb|ADQ07145.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis
           108]
          Length = 598

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  + K+L E   + +++ VK SGLRGRGG 
Sbjct: 111 FYKKQMRIALRNCGVINPENIEEYIAYDGYKALAKVLTEMTPEQVVDWVKRSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+
Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + L+ A+++    GLLG N     ++ DI +  GAGA++CGEETA
Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAIEQARQYGLLGKNILGTNFEFDIEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++
Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    +E  M  T  E++E   G    G     AV  GG S  C+PA  
Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G   + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + 
Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|320354225|ref|YP_004195564.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122727|gb|ADW18273.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 617

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 159/425 (37%), Positives = 251/425 (59%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
           M+  Q RI   N   +   ++   +++G +  + +    G + +I E+KASGLRGRGGAG
Sbjct: 132 MIQPQVRIVLRNCGIIDPTNIDHYLAQGGYSGMARAFSLGPEQVIEEMKASGLRGRGGAG 191

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F     +D   Y++ NADE +PG   DR ++  +PH ++EG +IA +AIGA 
Sbjct: 192 FPTGVKWGFARSSVAD-QKYVICNADEGDPGAFMDRSVLEGDPHAVLEGLLIAGYAIGAT 250

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y R E+    E LQ A+ +    G LG+N    G+D DI +  GAGA++CGEET+L
Sbjct: 251 VGYVYCRAEYPLAIERLQDAIAQMREQGFLGANILGSGFDFDIKIKKGAGAFVCGEETSL 310

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           ++S+EGK+G P  KPPFPA  GL+G PT +NNVE++A V  I+ +GA+WY+GFG E +RG
Sbjct: 311 MQSIEGKRGMPLSKPPFPAVSGLFGKPTNINNVETLAAVSAIMEKGAAWYAGFGTEKSRG 370

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK F+++G +     +E  M I    +I++  GG+  G     AV  GG S  C+PA  +
Sbjct: 371 TKTFALAGKITRTGLIEVPMGIRLRTIIDEVGGGV-LGGKPFKAVQTGGPSGGCIPAQFI 429

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ L  +GS +G+  +IV+D  + ++        F ++ESCG+C PCR GT  +
Sbjct: 430 -DLEVDYEHLASVGSIMGSGGMIVIDAESCMVDMARYFLTFTENESCGKCVPCRMGTQHL 488

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +R++  + +G     ++D L ++   ++  ++C LG  AA P+   ++ F       I+ 
Sbjct: 489 LRILTGITQGKGTLDQLDTLRKIGDTMKSASLCGLGQTAANPVLTTLQYFEEEYRAHIED 548

Query: 419 YHRCN 423
            H+C 
Sbjct: 549 -HKCP 552


>gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
 gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
          Length = 600

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 147/428 (34%), Positives = 227/428 (53%), Gaps = 8/428 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGG 57
               Q RI   N   +  + + + +    +  + +IL +      +I+E+ ASGLRGRGG
Sbjct: 111 FYKHQLRIALRNCGVINPEDIDEYIGVDGYAALGRILTEKIPPQQVIDEILASGLRGRGG 170

Query: 58  AGFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           AGF TG KW F     S D   ++  NADE +PG   DR ++  +PH++IE   IA + I
Sbjct: 171 AGFPTGRKWQFTHDAVSPDGVKFVCCNADEGDPGAFMDRSVLEGDPHSVIEAMAIAGYCI 230

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175
           GA   +IYVR E+    + L+ A+ +    GLLG N     +  ++ +  GAGA++CGEE
Sbjct: 231 GAQQGYIYVRAEYPIAVKRLEIAIKQAKEYGLLGDNIFGSDFSFNLELRLGAGAFVCGEE 290

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ S+EGK+G+P  +PPFPAN GL+  PT +NNVE+ A +  IL  GA  ++  G   
Sbjct: 291 TALMTSIEGKRGEPHPRPPFPANKGLFERPTLLNNVETYANITWILNHGADKFAAIGTPK 350

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           + GTK+F++ G +     VE  M      +IE   GG         A   GG S  C+PA
Sbjct: 351 STGTKVFALGGKITNTGLVEIPMGTPLRTVIEDIGGGCP-NGKKFKAAQTGGPSGGCIPA 409

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +    MDYD L  +GS +G+  +IVMD    ++        F   ESCG+C+ CR GT
Sbjct: 410 S-LIDTPMDYDSLGAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFIVDESCGKCSVCRIGT 468

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             ++ ++ ++ +G     ++D + E+  +++   +C LG  A  P+   +K+FR      
Sbjct: 469 KRLLGLLTKITEGEGTLEDLDTIEELCYHLKSSALCGLGQTAPNPVLSTLKHFRDEYVAH 528

Query: 416 IDQYHRCN 423
           + +  RC 
Sbjct: 529 VVE-KRCP 535


>gi|312135114|ref|YP_004002452.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
 gi|311775165|gb|ADQ04652.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
          Length = 598

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG 
Sbjct: 111 FYKKQMRIALRNCGIINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+
Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + L+ A+++    GLLG N     ++ DI +  GAGA++CGEETA
Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAINQAREYGLLGKNILGTDFEFDIEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +P I+ +G  W++  G E ++
Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWGKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    +E  M  T  E++E   G    G     AV  GG S  C+PA  
Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 LIDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G   + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + 
Sbjct: 468 MLEILQKITTGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|237748886|ref|ZP_04579366.1| NADH dehydrogenase chain F [Oxalobacter formigenes OXCC13]
 gi|229380248|gb|EEO30339.1| NADH dehydrogenase chain F [Oxalobacter formigenes OXCC13]
          Length = 433

 Score =  491 bits (1264), Expect = e-137,   Method: Composition-based stats.
 Identities = 211/419 (50%), Positives = 277/419 (66%), Gaps = 8/419 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMK 65
           +F  L G    +L+D +SRG ++   +IL     R+ II+EV+ASGLRGRGGAGF T +K
Sbjct: 13  LFRGLTG-DNWTLADYVSRGGYEQFKRILAERMPRERIIDEVRASGLRGRGGAGFPTAVK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           W FMPK    +  YL+ NADESEPGT KDRDI+R+ PH +IEG +IA++A+G    +IY+
Sbjct: 72  WGFMPKDHPGQM-YLICNADESEPGTFKDRDILRYNPHAVIEGMLIAAYAMGITAGYIYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     E    A+ +   +GL+G +    G+D ++   HG GAYICGEETALLES+EG
Sbjct: 131 HGEIWAVYEQFGEAIRQAREAGLIGRDLQGSGFDFELHAFHGYGAYICGEETALLESMEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K+GQPR KPPFPA  GLYG PTT+NNVE++A VP I+  G   Y+  GR N  GTK+F +
Sbjct: 191 KRGQPRFKPPFPATNGLYGQPTTINNVETLAYVPFIMAMGGDAYAALGRNNCPGTKIFCL 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  + I+F EL+E   G        + AVIPGGSS P LPA  M    MD
Sbjct: 251 SGDVARPGNYEVPLGISFPELLELAGGM--KDGLAMKAVIPGGSSSPVLPAETMMQLNMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LGT  VIV++ +  ++KA+  LS FY +ESCGQCTPCREGTGW++ ++ER
Sbjct: 309 YDSIAKAGSMLGTGGVIVLNETRCMVKALLNLSRFYWNESCGQCTPCREGTGWLVSLIER 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           +  G  +  ++DLL  V+ NI GRTICALGDAAA P++  IK+FR   E  I ++ RC 
Sbjct: 369 IENGQGKTEDLDLLDNVAANIMGRTICALGDAAAMPVRSFIKHFRAEFEYHI-EHKRCP 426


>gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
 gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 631

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 237/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +    +  + K+L E   D +I  +  SGLRGRGG 
Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG KWSF     SD   Y++ NADE +PG   DR I+  +PH++IE   IA +AIGA
Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+      L+ A+D+    GLLG N    G++ +I + +GAGA++CGEETA
Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P I+ +G  WY   G E + 
Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINKGGDWYKSIGTEKSN 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I     GI+       AV  GG S  C+PA  
Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGEGIK-NGKKFKAVQTGGPSGGCIPAS- 442

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 443 LLDIPIDYESLTAIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++  + ++  G   + +++ L E+S  I+  ++C LG  A  P+   ++ F    E  ++
Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVN 562

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 563 E-KRCP 567


>gi|57234506|ref|YP_181467.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224954|gb|AAW40011.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 623

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 165/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R +F N   +   S+ D ++ G + ++ K +     + I+ EV  SGLRGRGG 
Sbjct: 136 FYKKQMRLVFGNNGNIDPTSIDDYLAVGGYKSLAKAISGLKPEEIVEEVIKSGLRGRGGG 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +   D   Y++ N DE +PG   DR +M   PH++IEG +I ++AIG+
Sbjct: 196 GFPTGWKWKSC-RDAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGS 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H A+IY+R E+    +    A+ +    GLLG N    G+D+ I ++ G GA++CGE TA
Sbjct: 255 HEAYIYIRDEYPMAVKHALLAIKQAEDYGLLGENILGSGFDLKIHINRGGGAFVCGESTA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEGK G+PR K    +  GL+  PTT+NNVE+ A +P I+ +GA W++  G E ++
Sbjct: 315 LMASLEGKVGEPRAKYVHTSEKGLHDKPTTLNNVETWANIPLIIEKGADWFNKIGTEGSK 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G VN    +E  M IT  E++    GGI  G     A+  GG S  CLP   
Sbjct: 375 GTKIFSLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPES- 432

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +D+D L + GS +G+ A+IVMD    +++       F + ESCG+C PCREG   
Sbjct: 433 MLDLPVDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M +++ER+ KG  ++ +I+LL ++S+ I+  ++CALG +A  P+   IK FR   E  I 
Sbjct: 493 MRQILERITKGEGEEGDIELLEQLSQAIQDASLCALGGSAPNPVLSTIKYFRDEYEAHIR 552

Query: 418 QYHRCN 423
           Q   C 
Sbjct: 553 Q-KTCP 557


>gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 631

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + +++S++   +  + K + E   D ++  +  SGLRGRGG 
Sbjct: 146 FYKKQHRIALRNCGFINPEDITESIATKGYLALGKCITEMSADDVVKLIIDSGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWSF     +D   Y++ NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 206 GFPTGKKWSFAKAYDAD-QKYIICNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+      L+ A+D+    G+LG+N     +  +I + +GAGA++CGEETA
Sbjct: 265 SKGVIYIRAEYPLAVSRLKTAIDQALECGVLGNNILGSEFSFNIDIRYGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+P  KPPFPA  GL+  PT VNNVE++A +P I+  GA WYS  G   ++
Sbjct: 325 LIHSVEGCRGEPTNKPPFPAESGLWDKPTCVNNVETLANIPAIINNGAEWYSSIGTATSK 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I    GGI+ G     +V  GG S  C+PA  
Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIKNGRK-FKSVQTGGPSGGCIPASN 443

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 444 L-DIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVEESCGKCTPCRIGNKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++  G   + +++ L E+++ I+  ++C LG  A  PI   +K F    E  + 
Sbjct: 503 LLEILTKITNGQGTEDDLEKLKELAQTIKDTSLCGLGQTAPNPILSTMKYFADEYEAHVK 562

Query: 418 QYHRCN 423
           +   C 
Sbjct: 563 E-KSCP 567


>gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
 gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
          Length = 631

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 161/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +    +  + K+L E   D +I  +  SGLRGRGG 
Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGLEGYLALGKVLSEMTPDELIKLITDSGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG KWSF     SD   Y++ NADE +PG   DR I+  +PH++IE   IA +AIGA
Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+      L+ A+D+    GLLG N    G++ +I + +GAGA++CGEETA
Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P I+ RGA WY   G E + 
Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINRGADWYKSIGTEKSN 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I    GGI+       AV  GG S  C+PA  
Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++  + ++  G   + +++ L E+S  I+  ++C LG  A  P+   ++ F    +  +D
Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYKAHVD 562

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 563 E-KRCP 567


>gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
 gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
          Length = 597

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 163/426 (38%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  +++ + ++   +  + K+L E     +I+EV  SGLRGRGG 
Sbjct: 111 FYKRQKRVALRNCGLINPENIEEYIANDGYRALAKVLSEMTPQQVIDEVTRSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW F      D   Y+V N DE +PG   DR I+  +PHT++E   IA +AIGA
Sbjct: 171 GFPTGKKWQFAKDAPGD-VKYVVCNGDEGDPGAFMDRSILEGDPHTVLEAMAIAGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++    GLLG N    G++ DI +   +GA++CGEETA
Sbjct: 230 KEGYIYVRAEYPLAVKRLEIAIEQARERGLLGKNILGTGFEFDIFLRLRSGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++G+PR +PPFPA  GL+G PT +NNVE+ A +P I+  GA W++  G E ++
Sbjct: 290 LLASIEGRRGEPRPRPPFPAIEGLWGKPTLINNVETFANIPPIILNGADWFASIGTERSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E+I    GGI        AV  GG S  C+PA  
Sbjct: 350 GTKVFAVGGKINNTGLVEIPMGTTLREVIYDIGGGIP-NGKKFKAVQTGGPSGGCIPAS- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    ++YD L + GS +G+  +IVMD  T ++        F + ESCG+C PCR GT  
Sbjct: 408 LLDMPIEYDTLTQAGSMMGSGGMIVMDEDTCMVDIAKFFLTFTQDESCGKCPPCRIGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+  G  ++ +I+LL  ++KNI+   +C LG  A  P+   ++ FR   E  I 
Sbjct: 468 MLEILERITNGEGREGDIELLETLAKNIKASALCGLGQTAPNPVLSTLRYFRDEYEAHIR 527

Query: 418 QYHRCN 423
           +  +C 
Sbjct: 528 E-KKCP 532


>gi|300176713|emb|CBK24378.2| subunit NuoF (NDUFV1) [Blastocystis hominis]
          Length = 503

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 249/419 (59%), Positives = 308/419 (73%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+DQDRIFTNLY      +  +M RG W    ++LE G D II ++KASGLRGRGGA F 
Sbjct: 66  LSDQDRIFTNLYSQYDWHIDSAMERGFWYKTKELLEMGPDQIIADIKASGLRGRGGAAFP 125

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D    +LVVN DESEPGTCKDR+I+R +PH L+EGC++A +A+ A  
Sbjct: 126 SGLKWSFMPKASKDGRPNFLVVNCDESEPGTCKDREIIRKDPHALVEGCLVAGYAMHARA 185

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A+ E Y  G LG N+   GY+ D+ VH GAGAY+CGEE+A L
Sbjct: 186 AYIYIRGEFYNESIRLEEAIHEAYQKGFLGRNACGTGYNFDVFVHRGAGAYVCGEESAQL 245

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G+PRLKPPFPAN GLYGCPTTV N E+++V PTILRRG  W++GFGR+NN G 
Sbjct: 246 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNCETVSVSPTILRRGPEWFAGFGRKNNAGV 305

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE MSI+  EL+EKH GG+RGGWDNL AVIPGG+S   L      
Sbjct: 306 KLFAISGHVNNPCVVEEEMSISLRELLEKHAGGVRGGWDNLQAVIPGGASTRALNKDMCD 365

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MDYD L    SGLG+AAVIVMD+STD++ AI  LS FY HESCGQCTPCREG  W+ 
Sbjct: 366 VALMDYDSLGSFKSGLGSAAVIVMDKSTDMMAAIRNLSHFYMHESCGQCTPCREGLPWVY 425

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +M R+ +G  ++REID+L E+   IE  TIC L DAA WPI+GL+++++  I ER   
Sbjct: 426 DIMCRMERGQLEEREIDMLMEIGTQIELHTICGLADAAIWPIEGLMRSWKKEILERSRH 484


>gi|300123837|emb|CBK25108.2| subunit NuoF (NDUFV1) [Blastocystis hominis]
          Length = 490

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 249/419 (59%), Positives = 308/419 (73%), Gaps = 2/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+DQDRIFTNLY      +  +M RG W    ++LE G D II ++KASGLRGRGGA F 
Sbjct: 53  LSDQDRIFTNLYSQYDWHIDSAMERGFWYKTKELLEMGPDQIIADIKASGLRGRGGAAFP 112

Query: 62  TGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +G+KWSFMPK   D    +LVVN DESEPGTCKDR+I+R +PH L+EGC++A +A+ A  
Sbjct: 113 SGLKWSFMPKASKDGRPNFLVVNCDESEPGTCKDREIIRKDPHALVEGCLVAGYAMHARA 172

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A+ E Y  G LG N+   GY+ D+ VH GAGAY+CGEE+A L
Sbjct: 173 AYIYIRGEFYNESIRLEEAIHEAYQKGFLGRNACGTGYNFDVFVHRGAGAYVCGEESAQL 232

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G+PRLKPPFPAN GLYGCPTTV N E+++V PTILRRG  W++GFGR+NN G 
Sbjct: 233 ESLEGKQGKPRLKPPFPANAGLYGCPTTVTNCETVSVSPTILRRGPEWFAGFGRKNNAGV 292

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF+ISGHVN PC VEE MSI+  EL+EKH GG+RGGWDNL AVIPGG+S   L      
Sbjct: 293 KLFAISGHVNNPCVVEEEMSISLRELLEKHAGGVRGGWDNLQAVIPGGASTRALNKDMCD 352

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A+MDYD L    SGLG+AAVIVMD+STD++ AI  LS FY HESCGQCTPCREG  W+ 
Sbjct: 353 VALMDYDSLGSFKSGLGSAAVIVMDKSTDMMAAIRNLSHFYMHESCGQCTPCREGLPWVY 412

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +M R+ +G  ++REID+L E+   IE  TIC L DAA WPI+GL+++++  I ER   
Sbjct: 413 DIMCRMERGQLEEREIDMLMEIGTQIELHTICGLADAAIWPIEGLMRSWKKEILERSRH 471


>gi|75910850|ref|YP_325146.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Anabaena variabilis ATCC 29413]
 gi|1032476|emb|CAA55873.1| hydrogenase subunit [Anabaena variabilis ATCC 29413]
 gi|75704575|gb|ABA24251.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Anabaena variabilis ATCC 29413]
          Length = 535

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 145/413 (35%), Positives = 241/413 (58%), Gaps = 5/413 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + +   ++   +  + ++L E     +++ V  SGLRGRGGAG+ TG+KW
Sbjct: 126 VLENSGKIDPERIQAYIAAQGYQALYQVLREMTPAGVVDSVNRSGLRGRGGAGYPTGLKW 185

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           + + K   +   +++ NADE +PG   DR ++  +PH ++EG  IA++A+GA   +IYVR
Sbjct: 186 ATVAKAKGE-RKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGASQGYIYVR 244

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + LQ A+ +    GLLGSN  +  +D  I +  GAGAY+CGEETAL+ S+EGK
Sbjct: 245 AEYPIAIKRLQTAIHQAQRLGLLGSNIFESPFDFKIDIRIGAGAYVCGEETALMASIEGK 304

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G P  +PP+PA  GL+G PT +NNVE+ A +  I+R+GA W++  G   ++GTK+F+++
Sbjct: 305 RGVPHPRPPYPAESGLWGYPTLINNVETFANIAPIIRKGADWFASIGTAKSKGTKVFALA 364

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G +     +E  M  +  +++E+  GGI  G     AV  GG S  C+PA       +DY
Sbjct: 365 GKIRNTGLIEVPMGTSLRQIVEQMGGGIPDGG-VAKAVQTGGPSGGCIPASA-FDTPVDY 422

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L  +GS +G+  +IVMD +T+++        F   ESCG+C PCR GT  +  ++ ++
Sbjct: 423 ESLTNLGSMMGSGGMIVMDDTTNMVDVARFFMEFCMDESCGKCIPCRVGTVQLHGLLSKI 482

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +G A   +++LL E+   ++  ++C LG +A  P+   ++ FR      I +
Sbjct: 483 REGKASFADLELLEELCDMVKNTSLCGLGQSAPNPVFSTLRYFRDEYLALIAE 535


>gi|148244394|ref|YP_001219088.1| NADH dehydrogenase I chain F [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326221|dbj|BAF61364.1| NADH dehydrogenase I chain F [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 422

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 218/412 (52%), Positives = 275/412 (66%), Gaps = 6/412 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           F NL   Q  SL    + G + +  KIL  E   + II+E+K SGLRGRGGAGF TG+KW
Sbjct: 6   FKNLKKDQCWSLKIYEASGGYSSWRKILKGELTPEQIIDELKLSGLRGRGGAGFPTGLKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+  SD   Y+V N+DE EPGTCKDRDI+R  PH +IEG  I  F + A   + Y+R
Sbjct: 66  SFMPR-HSDGQKYVVCNSDEGEPGTCKDRDILRFNPHAVIEGMAIGGFVMNASVGYNYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF+   +  ++A++E Y +GLLG N      + D+  H GAGAYICGEETALLES+EGK
Sbjct: 125 GEFMEPFKRFESALEEAYKAGLLGQNINNSSINFDLYTHLGAGAYICGEETALLESIEGK 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPANVGL+G PTT+NN ES A VP ILR G  W++  G EN+ G KLFS+S
Sbjct: 185 KGQPRFKPPFPANVGLFGKPTTINNTESFASVPEILRCGGQWFADIGVENSGGCKLFSVS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M I+F +L+E   G        L AVIPGGSS P L A  +    MDY
Sbjct: 245 GHVTNPANFEVPMGISFKDLLEMAGGM--RDGAKLKAVIPGGSSTPVLTAEIVMNMTMDY 302

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DG+++ GS LG  +VIVM+ ST +++ + RL+ FY  ESCGQCTPCREGTGW+ RV++R+
Sbjct: 303 DGIEKAGSMLGAGSVIVMNESTCMVEVLTRLAHFYYDESCGQCTPCREGTGWLYRVLKRI 362

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + G  ++ +IDLL  V   I G TICALGDAAA P++  ++NFR   E  I 
Sbjct: 363 IDGNGRQGDIDLLLSVQNKIMGNTICALGDAAAMPVESFLRNFREEFEYYIK 414


>gi|82702225|ref|YP_411791.1| NADH-quinone oxidoreductase, F subunit [Nitrosospira multiformis
           ATCC 25196]
 gi|82410290|gb|ABB74399.1| NADH dehydrogenase subunit F [Nitrosospira multiformis ATCC 25196]
          Length = 425

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 208/410 (50%), Positives = 265/410 (64%), Gaps = 7/410 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
               L++   R  +  + KIL      + II EVK S LRGRGGAGF TG+KWSFMPK  
Sbjct: 18  NDWRLNNYEQREGYAALRKILSDKIPPEKIIEEVKKSALRGRGGAGFPTGLKWSFMPKQY 77

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                YLV N+DE EPGT KDRDIMR+ PH LIEG +I ++A+G    + YV GE     
Sbjct: 78  EG-DKYLVCNSDEGEPGTFKDRDIMRYNPHMLIEGMLIGAYAMGIRAGYNYVHGEIWDVY 136

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E ++ AVDE  A+G LG N     +   +  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 137 ERMEEAVDEARAAGYLGDNILGSDFSFQLYNHHGYGAYICGEETALLESLEGKKGQPRFK 196

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ A VP I+R G   +   G+ NN GTK+FS+SGHVN P 
Sbjct: 197 PPFPASFGLYGKPTTINNTETFASVPWIIRHGGDKFLQLGKPNNGGTKIFSVSGHVNKPG 256

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F  L+E   G    G   L   IPGGSS+P LP   M    MDYD + + G
Sbjct: 257 NYEVPLGTPFAALLEMAGGM--RGGRKLKGCIPGGSSMPVLPGDVMMQTDMDYDSIAKAG 314

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVI+MD +T +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  + 
Sbjct: 315 SFLGSGAVIIMDDTTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIVHRIETGKGRM 374

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            ++DLL  ++ NI+GRTICALGDAAA P++ +I++FR      + ++ +C
Sbjct: 375 EDLDLLNNLADNIQGRTICALGDAAAMPVRAMIQHFRDEFAYHV-EHKKC 423


>gi|332526752|ref|ZP_08402854.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
 gi|332111155|gb|EGJ11187.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
          Length = 448

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 211/425 (49%), Positives = 270/425 (63%), Gaps = 13/425 (3%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGA 58
           Q +I+  L G     L+D ++RG +  + KIL          D +I EVK S LRGRGGA
Sbjct: 24  QPQIYAGLDGRN-WRLADYVARGGYSALKKILGADGGPGMTPDQVIAEVKLSALRGRGGA 82

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFMP+     P YLV N+DE EPGTCKDRDI+ + PH +IEG  IA++A+G 
Sbjct: 83  GFPTGLKWSFMPRQFPG-PKYLVCNSDEGEPGTCKDRDILSYNPHIVIEGMCIAAYAMGI 141

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+ GE     +  + A+DE  A+G LG N     +   +   HG GAYICGEETA
Sbjct: 142 RTGYNYIHGEIFEVYQRFEEALDEARAAGFLGDNILGSQHSFQLHAFHGFGAYICGEETA 201

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   Y   G+ NN 
Sbjct: 202 LLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINHGGQAYLEVGKPNNG 261

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G V  P   E  M   F  L+E   G        L AVIPGGSS P LPA  
Sbjct: 262 GTKIFSVVGDVERPGNFEIPMGTPFATLLEMAGG---VKGGALKAVIPGGSSAPVLPARV 318

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    MDYD + + GS LG+ AVIVM+    +++++ RLS FY+HESCGQCTPCREGTGW
Sbjct: 319 MMDLTMDYDAIAKAGSMLGSGAVIVMNDKRCMVRSLMRLSYFYQHESCGQCTPCREGTGW 378

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R++ER+  G  +  ++ LL  V+ NI+GRTICALGDAAA P+QG++K+FR      + 
Sbjct: 379 LWRLVERIETGKGRAEDLALLDSVADNIKGRTICALGDAAAMPVQGMLKHFRDEFAWHV- 437

Query: 418 QYHRC 422
           ++  C
Sbjct: 438 EHKTC 442


>gi|298528247|ref|ZP_07015651.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511899|gb|EFI35801.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 774

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 154/429 (35%), Positives = 243/429 (56%), Gaps = 8/429 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
             + Q +I   N   +    +   ++ G +  V K+      D ++ EVK + LRGRGGA
Sbjct: 130 FYSKQVKIALRNTGKVDPHDIHQYIAAGGFKAVKKMFSRMSPDDVLEEVKKANLRGRGGA 189

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW+   +     P  ++ N DE +PG   DR IM  +P +L+EG +I +++I A
Sbjct: 190 GFPAGFKWAHTKRSGKGVPKLVIANGDEGDPGAFMDRSIMEGDPFSLLEGMLICAYSIDA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  FIYVR E+    ++L+ A+ +    GLLG N    G+D  + +  GAGA++CGE T+
Sbjct: 250 NFGFIYVRHEYPLAIKTLEKAIKQAEEMGLLGRNILGTGFDFSVFIKEGAGAFVCGEATS 309

Query: 178 LLESLEGKKGQPRLKPPFPANVG--LYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           L+ SLEG++G PR +PP  + VG   +G P+ +NN+E+ A VP I+ +GA W+ G G   
Sbjct: 310 LVASLEGQRGFPRARPPRLSEVGGGAWGYPSNLNNIETYACVPPIIEKGADWFLGIGTPG 369

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           + GTK+FS++G VN    VE  M IT  E++++  GGI        A+  GG S  C+P 
Sbjct: 370 SPGTKVFSLAGKVNNTGLVEVPMGITLREIVDEIGGGILNNRK-FKAIQTGGPSGGCIPE 428

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +    +D+D L ++GS +G+  ++VMD S  ++        F + ESCG+C PCR GT
Sbjct: 429 QYL-DLPVDFDSLWQVGSMMGSGGMVVMDESDCMVDIAKFFLAFCQSESCGKCPPCRVGT 487

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             M+++MER+  G  Q  +I+ L ++ + +   ++C LG +A  P+   ++ FR   EE 
Sbjct: 488 YQMLQIMERITSGEGQPGDIERLEKLIETVGEGSLCGLGRSAPNPVATTLRYFREEYEEH 547

Query: 416 I-DQYHRCN 423
           I D+Y R N
Sbjct: 548 IHDKYCRAN 556


>gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. 18P13]
          Length = 597

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 156/427 (36%), Positives = 236/427 (55%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R+   N   +  + + + + R  +  + K+L E   + +I  +  SGLRGRGG 
Sbjct: 109 FYKNQHRVALRNCGVINPECIDEYIGRDGYQALGKVLTEMTPEEVIQCILDSGLRGRGGG 168

Query: 59  GFSTGMKWSFMPK-VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TG KW      V +    Y+  NADE +PG   DR ++  +PH ++E   IA +AIG
Sbjct: 169 GFPTGRKWQLARNIVPNADQKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMAIAGYAIG 228

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IYVR E+    + L+ A+ +    GLLG N     +  DI +  GAGA++CGEET
Sbjct: 229 ATQGYIYVRAEYPIAVQRLEIAIKQAREYGLLGKNIFGTDFSFDIGLRLGAGAFVCGEET 288

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+ +GA W++  G E +
Sbjct: 289 ALMTSIEGNRGEPRPRPPFPAEKGLFQKPTILNNVETYANIPQIILKGADWFASMGTEKS 348

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F++ G ++    VE  M  T   +IE+  GGI  G     A   GG S  C+PA 
Sbjct: 349 KGTKVFALGGKIHNTGLVEVPMGTTLRTVIEEIGGGIPNG-KKFKAAQTGGPSGGCIPAE 407

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            M    +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR GT 
Sbjct: 408 HM-DIAIDYDNLIAIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTK 466

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M  +++++ KG A   ++D L E+  +++  ++C LG  A  P+   ++ FR      I
Sbjct: 467 RMYEILDKITKGKATLEDLDKLEELCYHVKANSLCGLGQTAPNPVLSTLRYFRDEYIAHI 526

Query: 417 DQYHRCN 423
            +  RC 
Sbjct: 527 VE-KRCP 532


>gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
              +Q R+   N   +  + +++ ++R  +  +  IL  + R  +I++V  S LRGRGG 
Sbjct: 137 FFHNQQRVVLRNCGVINPEDINEYIARDGYAALADILNHRSRAEVIDQVINSVLRGRGGG 196

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +     P Y+V NADE +PG   DR I+  +PH ++EG  I ++A+GA
Sbjct: 197 GFPTGKKWQIAARQE-VNPKYIVCNADEGDPGAFMDRSILEGDPHAILEGMSIGAYAVGA 255

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    GLLG N    G++ DI +  GAGA++CGEETA
Sbjct: 256 EQGYIYVRAEYPIAVDRLEIAIGQARQMGLLGKNILGSGFNFDIDIKLGAGAFVCGEETA 315

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S  G +G+PR +PP+PA  GL+G PT +NNVE+ A V  + ++G  W+ G G   + 
Sbjct: 316 LLHSCMGARGEPRPRPPYPAQEGLWGKPTVINNVETFANVTVVFQKGWQWFVGRGTAKSS 375

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E  M  T   +I    GGI        AV  GG S  C+P   
Sbjct: 376 GTKVFSLAGKIKNTGLIEVPMGSTLRSIIFDTGGGIP-DGHRYKAVQTGGPSGGCIPEEY 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   ++DYD L ++GS +G+  +IVMD    ++        F + ESCG+CTPCR GT  
Sbjct: 435 L-DILVDYDSLAKVGSIMGSGGLIVMDDRDCMVDIARFYVEFAQDESCGRCTPCRVGTKR 493

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ +++R+ KG  +  ++ LL E+S++I+  ++C LG  A  P+   ++ FR      I 
Sbjct: 494 LLEILQRITKGEGEMEDLRLLEELSQDIKVASLCGLGQTAPNPVLSTLRFFRDEYIAHIR 553

Query: 418 QYHRCN 423
             H C 
Sbjct: 554 DKH-CP 558


>gi|77993213|dbj|BAE46793.1| bidirectional hydrogenase F subunit [Nostoc sp. PCC 7422]
          Length = 541

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 146/426 (34%), Positives = 246/426 (57%), Gaps = 11/426 (2%)

Query: 1   MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T Q   +  N   +  + +   ++   +  +  +L ++    +++++  SGLRGRGGA
Sbjct: 118 FFTKQLPIVLENSGKVDPERIESYIAADGYQALYHVLRDRTPTEVVDDITRSGLRGRGGA 177

Query: 59  GFSTGMKWSFMPKVCSD------RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           G+ TG+KW+ + K   D         +++ NADE +PG   DR ++  +PH ++EG  IA
Sbjct: 178 GYPTGVKWATVAKAKGDAYGAHSERKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIA 237

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYI 171
           ++++GA+  +IY+R E+      LQ A+ +    GLLGSN     +D  I +  GAGAY+
Sbjct: 238 AYSVGANQGYIYIRAEYPIAINRLQIAIRQAQRLGLLGSNIFDSPFDFKIDIRIGAGAYV 297

Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
           CGEETAL+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A VP I+R+GA  ++  
Sbjct: 298 CGEETALMASIEGKRGTPHPRPPYPAESGLWGFPTLINNVETYANVPWIIRKGADVFASI 357

Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           G E ++GTK+F+++G +     +E  M  T  +++E+  GG+  G     AV  GG S  
Sbjct: 358 GTEKSKGTKVFALAGKIKNTGIIEVPMGTTLRQIVEEMGGGVPDGG-TAKAVQTGGPSGG 416

Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351
           C+PA     + +DY+ L ++GS +G+  +IVMD S++++        F   ESCG+C PC
Sbjct: 417 CIPASA-FDSAVDYESLTQLGSMMGSGGMIVMDESSNMVDVARFFMEFCMDESCGKCIPC 475

Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411
           R GT  + +++ ++ +G A   +++LL E+   ++  ++C LG +A  P+   ++ FR  
Sbjct: 476 RVGTVQLYKLLTKISEGKASFADLELLEELCDMVKHTSLCGLGQSAPNPVFSTLRYFRDE 535

Query: 412 IEERID 417
               I 
Sbjct: 536 YLTLIK 541


>gi|307110580|gb|EFN58816.1| hypothetical protein CHLNCDRAFT_56910 [Chlorella variabilis]
          Length = 949

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 266/441 (60%), Positives = 316/441 (71%), Gaps = 18/441 (4%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIFTNLYG     L  +  RG W     ++ KG +WII+EVKASG+RGRGGAGFS
Sbjct: 482 LQDSDRIFTNLYGRHDPFLEGAQKRGDWYRTADLIGKGPEWIISEVKASGIRGRGGAGFS 541

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMPK   DRPHYLVVN DE EPGT KDR+IMRH+PH L+EG ++A  A  A  A
Sbjct: 542 TGLKWSFMPKNF-DRPHYLVVNGDEGEPGTSKDREIMRHDPHKLLEGILLAGVATRAQAA 600

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE+   R SL+ A+ E Y +G LG N+   G D  +    GAGAY+CGEETALLE
Sbjct: 601 YIYIRGEYRNYRHSLERAIGEAYQAGYLGKNACGSGMDFHVYTQQGAGAYVCGEETALLE 660

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPP+PAN GLYGCPTT+NNVE+IA +P ILRRG+SWYS  GR NN GTK
Sbjct: 661 SLEGKQGRPRLKPPYPANAGLYGCPTTINNVETIASIPAILRRGSSWYSSLGRRNNTGTK 720

Query: 241 LFSISGHVNYPCTV--------------EESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
           LFSI       C                +E  S    ELIEKH GG+RGGWDNLLAVIPG
Sbjct: 721 LFSIRHATASQCPRGCRPRQPPVHGGGGDEHTSQARQELIEKHAGGVRGGWDNLLAVIPG 780

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           GSSVP +P       +MDYD L+E G+  GT AVIVMD+STDI++AI RLS FYKHESCG
Sbjct: 781 GSSVPLVPQSVASEVLMDYDSLQEAGTYFGTGAVIVMDKSTDIVEAIRRLSWFYKHESCG 840

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           QCTPCREG+GW+  ++ R+  G A  +EID+   +SK IEG TICALGDAAAWP+QGLI+
Sbjct: 841 QCTPCREGSGWLWDILTRIQTGEADVKEIDMAISISKIIEGHTICALGDAAAWPVQGLIR 900

Query: 407 NFRPLIEERIDQYH--RCNFQ 425
           +FRPL+EERI +    R N Q
Sbjct: 901 HFRPLVEERIRERQAARANNQ 921


>gi|146296868|ref|YP_001180639.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145410444|gb|ABP67448.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 598

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  + K+L E   + +I+ VK SGLRGRGG 
Sbjct: 111 FYKKQMRIALRNCGVINPENIEEYIAYDGYKALAKVLTEMTPEQVIDWVKRSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   Y+V NADE +PG   DR I+  +PH++IE   IA +AIG+
Sbjct: 171 GFPTGLKWEFAAKAPGD-VKYVVCNADEGDPGAYMDRSILEGDPHSVIEAMAIAGYAIGS 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + L+ A+++    GLLG N     ++ DI +  GAGA++CGEETA
Sbjct: 230 KQGYVYVRAEYPLAVKRLEIAINQAREYGLLGKNILGTDFEFDIEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+ +G  W++  G E ++
Sbjct: 290 LMTSIEGHRGEPRPRPPFPAVKGLWSKPTLLNNVETYANIPVIILKGPEWFASIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    +E  M  T  E++E   G    G     AV  GG S  C+PA  
Sbjct: 350 GTKVFALVGKVNNTGLIEVPMGTTVREIVEDIGG-GIPGGKKFKAVQTGGPSGGCIPAS- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +G+ +G+  +IVMD  T ++        F   ESCG+C PCR GT  
Sbjct: 408 LMDTPIDFDSLTALGTMMGSGGMIVMDEDTCMVDIAKFFLEFTVDESCGKCPPCRIGTRR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G   + +++ L E++ +I+   +C LG  A  P+   ++ FR   E  + 
Sbjct: 468 MLEILQKITSGNGTEEDLEKLEELAYSIKDSALCGLGQTAPNPVLSTLRYFRDEYEAHVK 527

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 528 E-KRCP 532


>gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus
           mobilis]
          Length = 609

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 230/426 (53%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
             T Q +I     G +    + D +  G +  ++K + E   D +I EV  SGLRGRGGA
Sbjct: 123 FYTPQVKIALRHVGEIDPHQIDDYIDHGGYGALEKTVKEMTPDVVIEEVHRSGLRGRGGA 182

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW       +  P Y+V N DE +PG   DR IM  +PH++IEG +I ++A+GA
Sbjct: 183 GFPTGRKWKQCASYEN-SPKYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMIIGAYAVGA 241

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  FIY+R E+    E+++ A+++    G LG N     +  D+ +  G GA++CGE TA
Sbjct: 242 NEGFIYIRDEYALAVETIRKAIEQARERGYLGRNILGSSFSFDLSIVRGGGAFVCGESTA 301

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK G+PR K       GL+G PT +NNVE+ A +P IL +G   +   G E + 
Sbjct: 302 LMASIEGKVGEPRAKYIRSVEKGLWGQPTVLNNVETWANIPVILTQGGDQFRQIGTEKST 361

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G V     VE  M I   ELI    GGI GG     AV  GG S  C+P   
Sbjct: 362 GTKVFSLVGKVKNTGLVEVPMGIRLRELIFDIGGGILGGRK-FKAVQTGGPSGGCIPEE- 419

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L E GS +G+  +IVMD  T ++        F   ESCG+C PCREG   
Sbjct: 420 LLDLPVDFDSLTEAGSMMGSGGMIVMDDRTCMVDVARYYVQFLADESCGKCVPCREGIRR 479

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++E + +G  Q+ ++DLL  + + +    +C LG +A  P+   I+ FR      I 
Sbjct: 480 MAEILEDICEGRGQESDLDLLLNIGETMAEAALCGLGKSAPNPVSTTIRYFREEYLAHIQ 539

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 540 E-RRCP 544


>gi|296127182|ref|YP_003634434.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563]
 gi|296018998|gb|ADG72235.1| NADH dehydrogenase (quinone) [Brachyspira murdochii DSM 12563]
          Length = 562

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 153/419 (36%), Positives = 240/419 (57%), Gaps = 6/419 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +    +  + K L E   D ++ E++ SGLRGRGGA
Sbjct: 138 FYQKQRRIVLKNCGMIDPENIDEYIGNDGYKALSKALFEMTPDEVLKEMQISGLRGRGGA 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KWSF   V ++   Y+V NADE +PG   DR I+  +PH++IE   IA + +GA
Sbjct: 198 GFPTWKKWSFTKGVEAE-QKYIVCNADEGDPGAYMDRSILEGDPHSVIEAMTIAGYTVGA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++Y+R E+    + ++ A+++ Y  GLLG N     +  D+ +  GAGA++CGEETA
Sbjct: 257 SKGYLYIRAEYGLAVDRVKIALEQAYNYGLLGQNILGSNFSFDLDIRLGAGAFVCGEETA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG +G PR +PPFPA  GL+  PT +NNVE+ A V  I+  G +W++  G EN++
Sbjct: 317 LLASIEGNRGTPRPRPPFPAIKGLFEYPTVINNVETFANVTAIINNGGNWFASIGTENSK 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G+VN    VE  M  T  E++    GGI      +  V  GG S   LP   
Sbjct: 377 GTKVFALTGNVNVSGLVEVPMGTTIREIVFDIGGGIPND-KFVKGVQTGGPSGGILPES- 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           + G  +D+D L E+GS +G+  +IV+D  ++++        F   ESCG+C PCR G   
Sbjct: 435 LFGTHIDFDNLVELGSMMGSGGMIVIDEDSNMVDFAKFYLGFCVDESCGKCVPCRVGGMQ 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M++++E+  K  A++ +I  L +++  +   ++CALG  AA P+   +K+F       I
Sbjct: 495 MLKILEKFTKKRAKEDDIQKLKDIALTMRKASLCALGSTAANPVMSTLKHFEDEYRAGI 553


>gi|254491610|ref|ZP_05104789.1| NADH oxidoreductase (quinone), F subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463088|gb|EEF79358.1| NADH oxidoreductase (quinone), F subunit [Methylophaga thiooxydans
           DMS010]
          Length = 425

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/415 (49%), Positives = 271/415 (65%), Gaps = 6/415 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           F   +  Q  +L      G +  ++ +L+     + I+ +VK S LRGRGGAGF TG+KW
Sbjct: 8   FRTSHLEQSWTLDAYRQVGGYQVLENLLKNKMRPEEILEQVKNSALRGRGGAGFPTGLKW 67

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDRDI+R+ PH LIEG +IA + IGA   + Y+R
Sbjct: 68  SFMPRRMPG-EKYIVCNSDEGEPGTCKDRDILRYNPHQLIEGMIIAGYTIGAGTGYNYIR 126

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF    E  +AA+ E   +GLLG N     +  ++  H GAGAYICGEETALLESLEGK
Sbjct: 127 GEFYEPIERFEAALKEAREAGLLGKNILGSDFHFELHTHIGAGAYICGEETALLESLEGK 186

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA  GLYG PTT+NN E++A +P IL+ G  W+   G +NN G+K+F ++
Sbjct: 187 KGQPRYKPPFPAGYGLYGRPTTINNTETLASIPVILQYGGDWFHEIGTQNNGGSKIFCMT 246

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHVN P   E  +   F EL+E   G      ++L AVIPGG+S P +P  +M    M Y
Sbjct: 247 GHVNKPGNYEVPLGTPFSELLELAGG--VRDGNSLKAVIPGGTSTPVVPGDKMLQLDMSY 304

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DG+ + GS LG  +VI+MD  T ++KA+ R++ FY  ESCGQCTPCREGTGW+ RV++R+
Sbjct: 305 DGIGKGGSMLGAGSVIIMDEKTCMVKALKRIAYFYYEESCGQCTPCREGTGWLYRVIKRI 364

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +G  ++ ++D L  V++NI G TICALGDAAA P+   IK+FR   +  ID  H
Sbjct: 365 EEGQGKQEDLDRLVNVAENINGNTICALGDAAAAPVMSFIKHFRDEFQYHIDHGH 419


>gi|299066338|emb|CBJ37522.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           CMR15]
          Length = 431

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 211/421 (50%), Positives = 275/421 (65%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62
           Q  I   L G     L D + RG +  + +IL +    + II +VKASGLRGRGGAGF T
Sbjct: 10  QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    +
Sbjct: 69  GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   E +  + A++E  A+GLLG N    G++  +  HHG GAYICGEETALLES
Sbjct: 128 NYIHGEIWNEYKIFEQALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+
Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKI 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+SG V  P   E  +   F +L+E   G    G   L AVIPGGSS P +PA  M  +
Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVVPADLMMAS 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV
Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++R+  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       + ++ +
Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424

Query: 422 C 422
           C
Sbjct: 425 C 425


>gi|33597906|ref|NP_885549.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           parapertussis 12822]
 gi|33574335|emb|CAE38671.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           parapertussis]
          Length = 455

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 211/408 (51%), Positives = 263/408 (64%), Gaps = 7/408 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
             L + + RG ++ + KIL      + +I EVKASGLRGRGGAGF TG+KWSFMP+    
Sbjct: 46  WRLQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPG 105

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YLV N+DE EPGT KDRDI+R  PH +IEG VIA++A+G    + Y+ GE     E 
Sbjct: 106 -QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMVIAAYAMGISVGYNYIHGEIFEVYER 164

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            + A++E  A+G LG       +   +   HG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 165 FEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPP 224

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTKLFSISG V  P   
Sbjct: 225 FPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERPGNY 284

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M   F +L+E   G    G   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 285 EIPMGTPFSKLLELAGGM--RGGRKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAGSM 342

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  +
Sbjct: 343 LGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGRPED 402

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +D+L  V+ NI GRTICALGDAAA P++  IK+FR      I ++  C
Sbjct: 403 LDMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHI-EHKSC 449


>gi|169351250|ref|ZP_02868188.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
 gi|169292312|gb|EDS74445.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
          Length = 599

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 234/426 (54%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++++ + +  +  + K+L E     +++ +K SGLRGRGG 
Sbjct: 112 FYNKQKRIALHNCGVIDPENINEYIGKDGYFALAKVLQEMTSQEVVDVIKESGLRGRGGG 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      D   Y++ NADE +PG   DR I+   PH++IE   IA +AIGA
Sbjct: 172 GFPTGVKWQFALDEPGD-EKYVICNADEGDPGAFMDRSILEGNPHSVIEAMAIAGYAIGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IY+R E+    E L +A+ +    GLLG N    G+D D+ +  GAGA++CGEETA
Sbjct: 231 NHGYIYIRAEYPIAVERLTSAIKQARELGLLGKNIFDSGFDFDLEIRLGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++S+EG++G P  KPPFPA+ G++G PT +NNVE+ A +  I++ GA W+   G E + 
Sbjct: 291 LIKSIEGERGMPNPKPPFPAHKGVWGKPTIINNVETYANIAQIIQHGAKWFRSIGTETSP 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +     +E  M  T  E+I +  GG         AV  GG S  CL   Q
Sbjct: 351 GTKVFALGGKIVNTGLIEVPMGTTLREVIYEIGGGCPNH-KRFKAVQTGGPSGGCLTEEQ 409

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + +D L ++GS +G+  +IV+D    ++        F   ESCG+CTPCR GT  
Sbjct: 410 L-DTPIGFDELVKLGSMMGSGGMIVLDEDNCMVDVARFYMDFIVDESCGKCTPCRVGTKR 468

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++ +G      +D L  ++  I+   +C LG  A  P+   I  FR      I 
Sbjct: 469 MLELLEQICEGKGTMATLDELEMLASTIQDTALCGLGQTAPNPVLSTIHQFRDEYIAHIV 528

Query: 418 QYHRCN 423
              +C 
Sbjct: 529 D-KKCP 533


>gi|160902190|ref|YP_001567771.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
 gi|160359834|gb|ABX31448.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
          Length = 485

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 157/417 (37%), Positives = 235/417 (56%), Gaps = 5/417 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + +Q RI   N   +  +++ D +    +  + K L   R+ +I  V  S LRGRGG GF
Sbjct: 1   MPEQVRIVLRNAGNIDPENIEDYLKNNGYLALAKALNSKREEVIQTVLDSNLRGRGGGGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F  +   D   Y++ NADE +PG   DR ++  +PH+++EG  IA +AIGA  
Sbjct: 61  PTGLKWKFAMQAKGD-EKYVICNADEGDPGAFMDRSVLEGDPHSVLEGMAIAGYAIGAQK 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
             IY+R E+      L+ A+ +    GLLG N     +  DI +  GAGA++CGEETAL+
Sbjct: 120 GIIYIRAEYPLAVARLKVAISQAKDYGLLGENILGSNFSFDIEIRLGAGAFVCGEETALI 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG +G+P  KPPFPAN GL+  PT +NNVE++A +  I+  GA W+  FG EN+ GT
Sbjct: 180 HSIEGLRGEPTNKPPFPANSGLWKKPTVINNVETLANIAPIILNGADWFKQFGTENSPGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F+++G V     VE  M  T  E+I    GGI+G      AV  GG S  C+PA  + 
Sbjct: 240 KVFALAGDVKKVGLVEVPMGTTLREIIFDIGGGIKGD-KKFKAVQTGGPSGGCIPAEYL- 297

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DYD L+ +GS +G+  +IVMD  T ++        F   ESCG+CT CR G   ++
Sbjct: 298 DTPIDYDSLQALGSMMGSGGMIVMDEDTCMVDVAKFYLQFTVDESCGKCTTCRVGNVRLL 357

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++E++  G AQ  ++D +  ++  ++  ++C LG  A  PI    + F    +E I
Sbjct: 358 EILEKITSGNAQLEDLDHMLTLANVVKNGSLCGLGQTAPNPILSTYRYFEDEYKEHI 414


>gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 624

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 165/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+     G +   S+++ ++ G +  ++K L +   D IINE+  + LRGRGG 
Sbjct: 138 FYKKQTRLVLEHCGQIDSTSITEYLATGGYYALEKALFDMTGDEIINEITEANLRGRGGG 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW+ + +  + +  Y+V N DE +PG   DR IM  +PH +IEG +IA  A GA
Sbjct: 198 GFPAGRKWAQVKRQNA-KQKYVVCNGDEGDPGAFMDRSIMEGDPHRMIEGMIIAGIACGA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+++    GLLG N     +  +I ++ GAGA++CGE +A
Sbjct: 257 SEGYIYVRAEYPLAVSRLKRAIEQAKEFGLLGENILGSNFSFNIHINRGAGAFVCGEGSA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I++ GA WY   G E + 
Sbjct: 317 LTASIEGKRGMPRVKPPRTVEQGLFDMPTVLNNVETFANVPLIIKNGADWYKSIGTEKSP 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G++     +E  M  T  E+I    GG+R G D   AV  GG S  CL    
Sbjct: 377 GTKAFALTGNIENTGLIEIPMGTTLREVIFDIGGGMRNGAD-FKAVQIGGPSGGCLSEKD 435

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK+ G+ +G+  ++VMD +T +++       F ++ESCG+C PCREGT  
Sbjct: 436 L-DLPLDFDSLKKAGAMIGSGGLVVMDSNTCMVEVARFFMNFTQNESCGKCVPCREGTKR 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V+G  Q  +I+LL E++  I    +C LG AAA+P+   IKNFR   E  I 
Sbjct: 495 MLEILERIVEGNGQDGDIELLLELADTISATALCGLGKAAAFPVVSTIKNFREEYEAHIY 554

Query: 418 QYHRCN 423
              RC 
Sbjct: 555 D-KRCP 559


>gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1]
 gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1]
          Length = 606

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  +++ + ++   +  + K L E   + +I EVK SGLRGRGG 
Sbjct: 111 FYAKQTRVALRNCGNINPENIDEYIAHDGYRALGKALTEMTPEQVIEEVKKSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF+TG+KW F  K  SD   Y+  NADE +PG   DR I+  +PH+++E   +A +AIGA
Sbjct: 171 GFTTGLKWEFTYKSKSD-KKYVACNADEGDPGAFMDRSILEGDPHSVLEAMALAGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L  A+++    GLLG       ++ DI +  GAGA++CGEETA
Sbjct: 230 DTGYIYVRAEYPIAVKRLSIAIEQAREYGLLGHGIFGTDFNFDIELRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G PR +PPFPA  G++G PT +NNVE+ A VP I+ +G  W++  G E ++
Sbjct: 290 LIESIEGKRGMPRPRPPFPAVKGVWGKPTLLNNVETYANVPLIILKGGEWFARIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE  M  T  E+I    GGI        A   GG S  CL    
Sbjct: 350 GTKVFALGGKINNTGLVEIPMGTTLKEVIYGIGGGIP-NGKKFKAAQTGGPSGGCLTEE- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L ++GS +G+  +I+MD    ++        F   ESCG+CTPCREGT  
Sbjct: 408 LLDTEIDFDNLVKLGSMMGSGGMIIMDEDNCMVDIARFYLDFTCDESCGKCTPCREGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM ++ R+ +G  +  ++D L  +++ I+  ++C LG  A  P+   + +F+      + 
Sbjct: 468 MMEILNRITEGKGELSDLDELEHLAEYIKSSSLCGLGQTAPNPVLSTLSHFKDEYLAHVV 527

Query: 418 QYHRCN 423
              RC 
Sbjct: 528 D-KRCP 532


>gi|304313910|ref|YP_003849057.1| NADH dehydrogenase [Methanothermobacter marburgensis str. Marburg]
 gi|302587369|gb|ADL57744.1| predicted NADH dehydrogenase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 620

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 154/419 (36%), Positives = 246/419 (58%), Gaps = 6/419 (1%)

Query: 1   MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            +  Q  RI      +  ++++  ++ G +  + + LE   + II EVK SGLRGRGGAG
Sbjct: 127 FMEKQSRRILRRGGLIDPENINHYLATGGYRGLLRALEMKPEDIIEEVKDSGLRGRGGAG 186

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +KWS   +  SD   YLV NADE +PG   +R ++  +PH+L+EG +IAS+A+GA 
Sbjct: 187 FPTWLKWSLCRQEESD-VKYLVCNADEGDPGAFMNRSLIEGDPHSLLEGILIASYAVGAE 245

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY R E+    E L+ A+ +    GLLG +    G+ +DI +  GAGA++CGEETAL
Sbjct: 246 EAYIYCRAEYPLALERLRTAISDLRDLGLLGEDILDSGFSLDIRIKEGAGAFVCGEETAL 305

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR +PPFP   GL+G PT +NNVE++A V  I++ G  +++  G E + G
Sbjct: 306 IASIEGKRGMPRTRPPFPTTSGLWGKPTVINNVETLAAVSMIMQHGPEYFNTPGTEGSPG 365

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK FS+ G V     +E  +  +  E+I    GG+R G   L AV  GG S  CLPA  +
Sbjct: 366 TKTFSLVGDVRRTGLIEVPLGTSLREVIHDIGGGVRDG--ELKAVQIGGPSGGCLPAE-L 422

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L   G+ +G+  ++V+   T +++       F + ESCG+C PCR GT  M
Sbjct: 423 VDTGIDYDSLTSAGAIMGSGGLVVLSDHTCMVELARYFLEFTQRESCGKCVPCRVGTRQM 482

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + ++  +V+G  ++ ++++L ++++ +   ++C LG  +  P+   ++ F     + I+
Sbjct: 483 LMILNDIVEGSGREEDLEILRDIAETVRAASLCGLGQTSPNPVLTTLRYFEREYRDHIN 541


>gi|325983284|ref|YP_004295686.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas sp. AL212]
 gi|325532803|gb|ADZ27524.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas sp. AL212]
          Length = 425

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 204/408 (50%), Positives = 267/408 (65%), Gaps = 7/408 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
             L     R  +  + KIL K    + +I EVK S LRGRGGAGF TG+KWSFMPK    
Sbjct: 20  WRLRSYEKREGYAALKKILIKKIAPEEVIEEVKKSALRGRGGAGFPTGLKWSFMPKGYEG 79

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V N+DE EPGT KDRDI+R+ PH LIEG +IA++A+G    + Y+ GE     E 
Sbjct: 80  -DKYIVCNSDEGEPGTFKDRDILRYNPHILIEGMIIAAYAMGVKAGYNYIHGEIWETYER 138

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           ++ AV+E  ++G LG+N     +   +  HHG GAYICGEETALLES+EGKKGQPR KPP
Sbjct: 139 MEDAVEEARSAGYLGNNILGSTFSFQLYNHHGYGAYICGEETALLESIEGKKGQPRFKPP 198

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPAN GLYG PTT+NN E+ A VP I+R     Y   G+ NN GTK+FS+SGHVN P   
Sbjct: 199 FPANYGLYGKPTTINNTETFASVPWIIRNSGEKYLQLGKPNNGGTKIFSVSGHVNKPGNY 258

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +  +F +L+E   G    G   L   IPGGSS+P LP   M    MDYD + + GS 
Sbjct: 259 EIPLGTSFAKLLELAGGM--RGGRKLKGCIPGGSSMPVLPGDIMMQTDMDYDSIAKAGSM 316

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVI+MD +T +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  +
Sbjct: 317 LGSGAVIIMDETTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIVNRIEHGKGRSED 376

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +DLL  ++ NI+GRTICALGDAAA P++ ++++FR      I ++ +C
Sbjct: 377 LDLLDNIADNIQGRTICALGDAAAMPVRAMLQHFRDEFAYHI-EHKKC 423


>gi|114321114|ref|YP_742797.1| NADH-quinone oxidoreductase, F subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227508|gb|ABI57307.1| NADH dehydrogenase subunit F [Alkalilimnicola ehrlichii MLHE-1]
          Length = 425

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 214/416 (51%), Positives = 275/416 (66%), Gaps = 7/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
            T L      SL    + G +   +KIL++   ++ II  VK + LRGRGGAGF  G+KW
Sbjct: 7   LTTLDKETPWSLETYRAMGGYQAWEKILKEKTPQEEIIETVKKANLRGRGGAGFPAGVKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            FMP+       Y+V N+DESEPGTCKDRDI+R  PH L+EG  IA +A+GA   + Y+R
Sbjct: 67  GFMPRNAPG-QKYIVCNSDESEPGTCKDRDILRFNPHALVEGMAIAGYAMGATVGYNYLR 125

Query: 127 GEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           GEF  E  E ++ AV E   +GLLG N    G D ++  H GAGAYICGEE+AL+ESLEG
Sbjct: 126 GEFHHEPFERIEQAVREAREAGLLGRNIQGSGIDFELHNHIGAGAYICGEESALMESLEG 185

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA VG+YG PTT+NN E++A VP+I+R+G+ W+   G+ NN G K+F +
Sbjct: 186 KKGQPRYKPPFPAQVGVYGRPTTINNTETLASVPSIMRKGSEWFLELGKPNNGGEKIFCV 245

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHV  P   E  +   F +L+E   G    G   L AVIPGGSS+P +P   M  A MD
Sbjct: 246 SGHVERPGNFEVPLGTPFKDLLEMAGG--VRGGRKLKAVIPGGSSMPVVPGETMLQATMD 303

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YDGL E+GS LG+  VIVMD +TD++KAI R+S FY  ESCGQCTPCREGTGWM RV+ R
Sbjct: 304 YDGLAEIGSALGSGGVIVMDETTDMVKAILRISRFYFAESCGQCTPCREGTGWMQRVLRR 363

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +V+G  +  +I+LL   +  I G TICA G+AAAWP+Q  +K+FR   E  ++   
Sbjct: 364 IVEGKGRHEDIELLEAAAGQIAGHTICAFGEAAAWPVQSFLKHFRHEFEYYVEHKR 419


>gi|319937320|ref|ZP_08011727.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
 gi|319807686|gb|EFW04279.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
          Length = 597

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 153/426 (35%), Positives = 235/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +++  +  + K+L E     +++E+K SGLRGRGG 
Sbjct: 110 FYEKQKRIALHNCGVIDPENIQEYIAKDGYFALGKVLTEMKPQEVVDEIKESGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F      D   Y++ NADE +PG   DR I+   PH++IE   IA +AIGA
Sbjct: 170 GFPTGLKWQFALNEPGD-EKYVICNADEGDPGAFMDRSILEGNPHSVIEAMEIAGYAIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IY+R E+    E L+ A+ E    GLLG++    G+  D+ +  GAGA++CGEETA
Sbjct: 229 HHGYIYIRAEYPIAVERLKHAIQEAKELGLLGNDIFGSGFHFDLEIRLGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++S+EG++G P  KPPFPA+ G++G PT +NNVE+ A +  I+  GA W+   G E + 
Sbjct: 289 LIQSIEGERGMPSPKPPFPAHKGVWGKPTIINNVETYANIAQIITHGAKWFRSIGTETSA 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +     VE  M  T  E+I +  GG      +  AV  GG S  CL   Q
Sbjct: 349 GTKVFALGGKIVNTGLVEVPMGTTLREVIYEIGGGCP-NRKSFKAVQTGGPSGGCLTESQ 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + +D L ++GS +G+  +IV+D    ++        F   ESCG+C+PCR GT  
Sbjct: 408 L-DTPIGFDELVKLGSMMGSGGMIVLDEDNCMVDVARFYMDFIVDESCGKCSPCRIGTKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E + +G      +D L  ++  I+   +C LG +A  P+   I  FR      I 
Sbjct: 467 MLELLEDICEGRGTMETLDELEVLATTIKDTALCGLGQSAPNPVLSTILQFREEYIAHII 526

Query: 418 QYHRCN 423
              +C 
Sbjct: 527 D-KKCP 531


>gi|255067286|ref|ZP_05319141.1| NADH oxidoreductase, F subunit [Neisseria sicca ATCC 29256]
 gi|255048437|gb|EET43901.1| NADH oxidoreductase, F subunit [Neisseria sicca ATCC 29256]
          Length = 431

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + +IL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYSALRRILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ A VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFASVPFIVRDGGQTFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEILKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|297618250|ref|YP_003703409.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
 gi|297146087|gb|ADI02844.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
          Length = 605

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 159/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
             T Q ++   N+  +   ++ D ++R  +  + K+L+    + +I+EV+ SGLRGRGGA
Sbjct: 119 FYTKQLKVALRNIGEIDPANIQDYIARDGYQALAKVLKSMSPEQVIDEVQRSGLRGRGGA 178

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW       ++ P Y+V N DE +PG   DR IM  +PH++IEG +I ++A+GA
Sbjct: 179 GFPTGLKWKACASQAAE-PRYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMIIGAYAVGA 237

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+     +L  A+++   SG LG N    G+  DI +  G GA++CGEETA
Sbjct: 238 AAGFIYVRDEYDLAVVNLGRAIEDARRSGYLGDNILGSGFSFDIEIVRGGGAFVCGEETA 297

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG  G+PR K  +P   GL+G PT +NNVES A VP I+ RGA  ++  G   ++
Sbjct: 298 LLASIEGNVGEPRDKYVYPTEKGLWGQPTVINNVESWANVPVIINRGADEWARVGTATSK 357

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G V     VE  M  T  E+I    GGI  G     AV  GG S  C+PA  
Sbjct: 358 GTKVFSLVGKVYNTGLVEVPMGTTLREIIFDIGGGIPNG-RQFKAVQTGGPSGGCIPAS- 415

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +GS +G+  +IVMD  T +++       F   ESCG+C PCREG   
Sbjct: 416 LIDLPVDFDSLTSVGSMMGSGGMIVMDDRTCMVEVARYYLNFLAGESCGKCVPCREGIRR 475

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+        ++++L  + + ++  ++C LG  A  P+   ++ FR      I 
Sbjct: 476 MLEILTRICNAQGHPEDLEILSSLGETLQVASLCGLGKTAPNPVLSTLRYFRDEYVAHIV 535

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 536 E-KRCP 540


>gi|261378535|ref|ZP_05983108.1| NADH oxidoreductase, F subunit [Neisseria cinerea ATCC 14685]
 gi|269145085|gb|EEZ71503.1| NADH oxidoreductase, F subunit [Neisseria cinerea ATCC 14685]
          Length = 431

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 200/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  +   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|33592012|ref|NP_879656.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           pertussis Tohama I]
 gi|33602811|ref|NP_890371.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           bronchiseptica RB50]
 gi|33571656|emb|CAE41149.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           pertussis Tohama I]
 gi|33577253|emb|CAE35810.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           bronchiseptica RB50]
 gi|332381428|gb|AEE66275.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella
           pertussis CS]
          Length = 455

 Score =  489 bits (1258), Expect = e-136,   Method: Composition-based stats.
 Identities = 210/408 (51%), Positives = 262/408 (64%), Gaps = 7/408 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
             L + + RG ++ + KIL      + +I EVKASGLRGRGGAGF TG+KWSFMP+    
Sbjct: 46  WRLQEYVKRGGYEALRKILTTGMTPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPG 105

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    + Y+ GE     E 
Sbjct: 106 -QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYER 164

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            + A++E  A+G LG       +   +   HG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 165 FEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPP 224

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTKLFSISG V  P   
Sbjct: 225 FPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERPGNY 284

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M   F +L+E   G    G   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 285 EIPMGTPFSKLLELAGGM--RGGRKLKAVIPGGSSAPVLPADIMMDCTMDYDAIAKAGSM 342

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  +
Sbjct: 343 LGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGRPED 402

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +D+L  V+ NI GRTICALGDAAA P++  IK+FR      I ++  C
Sbjct: 403 LDMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHI-EHKSC 449


>gi|225077023|ref|ZP_03720222.1| hypothetical protein NEIFLAOT_02075 [Neisseria flavescens
           NRL30031/H210]
 gi|224951580|gb|EEG32789.1| hypothetical protein NEIFLAOT_02075 [Neisseria flavescens
           NRL30031/H210]
          Length = 431

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQVFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|241760593|ref|ZP_04758685.1| NADH oxidoreductase, f subunit [Neisseria flavescens SK114]
 gi|261379575|ref|ZP_05984148.1| NADH oxidoreductase, F subunit [Neisseria subflava NJ9703]
 gi|241318774|gb|EER55300.1| NADH oxidoreductase, f subunit [Neisseria flavescens SK114]
 gi|284798049|gb|EFC53396.1| NADH oxidoreductase, F subunit [Neisseria subflava NJ9703]
          Length = 431

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|291296251|ref|YP_003507649.1| NADH-quinone oxidoreductase F subunit [Meiothermus ruber DSM 1279]
 gi|290471210|gb|ADD28629.1| NADH-quinone oxidoreductase, F subunit [Meiothermus ruber DSM 1279]
          Length = 438

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 198/414 (47%), Positives = 270/414 (65%), Gaps = 7/414 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           ++ ++      +LS  ++ G +  + K + +G+DW+I EVK SGLRGRGGAGF TG+KWS
Sbjct: 17  LYKHVGQPNSWTLSYYLAHGGYQAIRKAIAQGQDWVIEEVKKSGLRGRGGAGFPTGLKWS 76

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           FMP+    + HY+V NADESEPG+ KDR +M  +PH LIEG +IA  AI A   +IY+RG
Sbjct: 77  FMPRNT-GKQHYIVCNADESEPGSFKDRYLMEDDPHQLIEGMMIAGVAIQASKGYIYIRG 135

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+ R  + L AA+ E YA+G LG N    G+  D+ VH GAGAYICGEETAL+ SLEG +
Sbjct: 136 EYRRAYDRLIAAIREAYAAGYLGQNVMGTGFSFDLYVHRGAGAYICGEETALMNSLEGLR 195

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
             PR+KPPFPA  GL+G PTT+NNVES+  V  I+ RGA W++  G E ++G KLF +SG
Sbjct: 196 ANPRMKPPFPAQAGLWGMPTTINNVESLCSVVHIIERGADWFASMGTEKSKGHKLFQVSG 255

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDY 305
               P   E  +  TF EL+    GG     + + A+IPGGSS P LP   ++    MDY
Sbjct: 256 PFKRPGVYELPLGTTFRELLFDWAGGPT---EPIQAIIPGGSSCPPLPWNDEILDTPMDY 312

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GWMMRVMER 364
           + +   GS LGT  VI +  S  ++ A+W ++ FY HESCG+CTPCREG  GWM+ + E+
Sbjct: 313 ESISAKGSLLGTGGVIGIPASMSMVDAMWNITRFYGHESCGKCTPCREGVSGWMVSLFEK 372

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +  G  QK +++LL  +   IEGR+ CAL DAA WP++G +K+FR    E ++Q
Sbjct: 373 IGTGQGQKGDVELLESMLDQIEGRSFCALADAACWPVRGSLKHFRHQFVEAVEQ 426


>gi|91789111|ref|YP_550063.1| NADH-quinone oxidoreductase subunit F [Polaromonas sp. JS666]
 gi|91698336|gb|ABE45165.1| NADH dehydrogenase subunit F [Polaromonas sp. JS666]
          Length = 467

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/419 (51%), Positives = 270/419 (64%), Gaps = 11/419 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I  +L G     L D  +RG +  + KIL K        D +I EVKAS LRGRGGAGF 
Sbjct: 37  ILADLDGSN-WRLKDYEARGGYQALRKILGKDGGEGLTPDQVIAEVKASSLRGRGGAGFP 95

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       YLV N+DE EPGTCKDRDIM++ PH++IEG  IA++A+G    
Sbjct: 96  TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDIMQYNPHSVIEGMAIAAYAMGISIG 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE        + A+DE  A+GL+G       +   +   HG GAYICGEETALLE
Sbjct: 155 YNYIHGEIFATYRRFEEALDEARAAGLIGEKILGSSFTFQLHASHGFGAYICGEETALLE 214

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK
Sbjct: 215 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 274

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           ++S+SG V  P   E  M   F  L+E   G        L AVIPGGSS P LPA  M  
Sbjct: 275 IYSVSGDVELPGNYEVPMGTPFARLLELAGG--VRKGRTLKAVIPGGSSAPVLPASIMMD 332

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 333 CTMDYDSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLWR 392

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V++R+  G  ++ ++DLL  V+ NI+GRTICALGDAAA P++ +IK+FR   E  I Q 
Sbjct: 393 VVDRIHNGHGKQTDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEAMIPQK 451


>gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 631

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 238/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +    +  + K+L E   D +I  +  SGLRGRGG 
Sbjct: 146 FYKKQKRIALRNCGLINPEDIKECIGSEGYLALGKVLSEMTLDELIKLITDSGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG KWSF     SD   Y++ NADE +PG   DR I+  +PH++IE   IA +AIGA
Sbjct: 206 GFSTGKKWSFGKMYDSD-VKYIICNADEGDPGAFMDRSILEGDPHSIIEAMAIAGYAIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+      L+ A+D+    GLLG N    G++ +I + +GAGA++CGEETA
Sbjct: 265 SEGRIYIRAEYPLAVNRLKIAMDQAKECGLLGENILGTGFNFNIEIKYGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+P  KPPFPA  GL+  PT VNNVE++A +P I+  GA WY   G E + 
Sbjct: 325 LIHSIEGERGEPTYKPPFPAEAGLWNKPTVVNNVETLANIPAIINGGADWYKSIGTEKSN 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I    GGI+       AV  GG S  C+PA  
Sbjct: 385 GTKVFALAGKINNVGLVEVPMGTTLREIIYDIGGGIK-NGKKFKAVQTGGPSGGCIPAS- 442

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 443 LLDIPIDYESLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVDESCGKCTPCRIGNKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++  + ++  G   + +++ L E+S  I+  ++C LG  A  P+   ++ F    E  ++
Sbjct: 503 LLETLIKITNGKGSEEDLNKLDELSHIIKDTSLCGLGQTAPNPVLSTMRYFMDEYEAHVN 562

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 563 E-KRCP 567


>gi|241663479|ref|YP_002981839.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12D]
 gi|309781857|ref|ZP_07676590.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA]
 gi|240865506|gb|ACS63167.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12D]
 gi|308919498|gb|EFP65162.1| NADH oxidoreductase (quinone), F subunit [Ralstonia sp. 5_7_47FAA]
          Length = 431

 Score =  488 bits (1257), Expect = e-136,   Method: Composition-based stats.
 Identities = 209/421 (49%), Positives = 274/421 (65%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62
           Q  I   L G     L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF T
Sbjct: 10  QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    +
Sbjct: 69  GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   E +  + A++E  A+G LG N    G++  +  HHG GAYICGEETALLES
Sbjct: 128 NYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+
Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKI 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+SG V  P   E  +   F +L+E   G    G   L AVIPGGSS P +PA  M  +
Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVVPADLMMAS 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV
Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWLYRV 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++R+  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       + ++ +
Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424

Query: 422 C 422
           C
Sbjct: 425 C 425


>gi|255527514|ref|ZP_05394382.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|255508784|gb|EET85156.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
          Length = 601

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 229/426 (53%), Gaps = 8/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q++I   N+  +    + D + RG +  + K++ +   + ++ EV  SGLRGRGGA
Sbjct: 114 FCKRQNKIALRNVGEIDPTVIEDYIERGGYKALKKVISQMKPEDVLKEVGDSGLRGRGGA 173

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW    ++ +  P Y+V N DE +PG   DR IM  +PH++IEG  I ++A+G 
Sbjct: 174 GFPTSRKWQTAAEIDT-TPKYVVCNGDEGDPGAFMDRSIMEGDPHSVIEGMTICAYAVGG 232

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F Y+R E+    E++Q A++     G LG N     +  DI +  G GA++CGE TA
Sbjct: 233 TLGFAYIRDEYGLAVENMQKAINVARERGFLGENILGTNFSFDIQIVRGGGAFVCGESTA 292

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENN 236
           L+ S+EG  G+PR K       GL+G PT +NNVE+ A +P IL +G  WY   G  E +
Sbjct: 293 LMSSIEGMVGEPRAKYIHTTEKGLWGQPTVLNNVETWANIPIILDKGGQWYHSIGTMEKS 352

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+FS+ G V     VE  M  T  E+I    GG+        AV  GG S  CLP  
Sbjct: 353 KGTKVFSLVGKVKNTGLVEVPMGTTLREIIFNIGGGVLNDRK-FKAVQIGGPSGGCLPEE 411

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DYD L +  S +G+  +IVMD  T I+        F   ESCG+C PCREG  
Sbjct: 412 YL-DLPVDYDTLTKADSMMGSGGMIVMDDRTCIVDVTRYYLGFLAEESCGKCVPCREGVK 470

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ +M  +  G  ++ +++ L E++   +   +C+LG +AA P+   I+ FR   EE I
Sbjct: 471 RMLEIMTDICNGEGREGDLEELLEIASMSKEAALCSLGKSAANPVLASIRYFRDEFEEHI 530

Query: 417 DQYHRC 422
            +  RC
Sbjct: 531 -RNKRC 535


>gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
 gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 140/427 (32%), Positives = 237/427 (55%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + +S+ ++   +  + K LE      +I+E+K SGLRGRGGA
Sbjct: 141 FYKKQLRVALRNCGHINPEDISEYIANDGYLALAKCLEEMTPQGVIDEMKKSGLRGRGGA 200

Query: 59  GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TG+KW+   +    +   Y+V NADE +PG   DR ++  +PH+++E   IA +A  
Sbjct: 201 GFPTGLKWAAAAENPRLNGHKYIVCNADEGDPGAFMDRSLLEGDPHSVLEAMAIAGYATD 260

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           +   +IY+R E+    E L+ A+ +   +G+LG N    G++  I + +GAGA++CGE T
Sbjct: 261 SDMGYIYIRAEYPLAIERLKIAIAQAEEAGVLGENILGTGFNFKIELKYGAGAFVCGEGT 320

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL++S+EG +G+P +   FP   GL+  PTTVNNVE+   +P I+ +GA W++ FG E++
Sbjct: 321 ALIKSIEGNRGEPIVNKYFPTEHGLWQAPTTVNNVETFGNIPAIINKGADWFASFGTEDS 380

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F++ G VN    VE  M  T  E++ +  GGI GG +   AV  GG S  C+ + 
Sbjct: 381 KGTKVFALGGKVNNVGLVEVPMGTTLREIVYEIGGGIPGGKE-FKAVQTGGPSGGCISSK 439

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D+  L  +GS +G+  ++V+D +  ++        F   ESCG+CTPCR G  
Sbjct: 440 DL-DTPIDFKSLASIGSMMGSGGMLVLDETDCMVDISKFFLEFTVDESCGKCTPCRIGNR 498

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++ ++ ++ +G   + ++  L  ++  I+  ++C LG  A  P+   +  F       +
Sbjct: 499 RLLEILNKICRGNGTEEDLVNLKSLATIIKNTSLCGLGKCAPNPVLSTLNCFYDEYLAHV 558

Query: 417 DQYHRCN 423
               +C 
Sbjct: 559 KD-KKCP 564


>gi|296313741|ref|ZP_06863682.1| NADH oxidoreductase, F subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839664|gb|EFH23602.1| NADH oxidoreductase, F subunit [Neisseria polysaccharea ATCC 43768]
          Length = 431

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 200/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQIDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  +   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|17546776|ref|NP_520178.1| NADH dehydrogenase I chain F [Ralstonia solanacearum GMI1000]
 gi|17429076|emb|CAD15764.1| probable nadh dehydrogenaseI(chain f) oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
          Length = 431

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 211/421 (50%), Positives = 275/421 (65%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62
           Q  I   L G     L D + RG +  + +IL +    + II +VKASGLRGRGGAGF T
Sbjct: 10  QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    +
Sbjct: 69  GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   E +  + A++E  A+GLLG N    G++  +  HHG GAYICGEETALLES
Sbjct: 128 NYIHGEIWNEYKLFEQALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+
Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKI 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+SG V  P   E  +   F +L+E   G    G   L AVIPGGSS P +PA  M  +
Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVVPADLMMAS 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV
Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++R+  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       + ++ +
Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424

Query: 422 C 422
           C
Sbjct: 425 C 425


>gi|325130975|gb|EGC53702.1| NADH:quinone oxidoreductase, F subunit [Neisseria meningitidis
           OX99.30304]
          Length = 431

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 262/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + ++G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKVG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|261391778|emb|CAX49233.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F;
           NDH-1, chain F) [Neisseria meningitidis 8013]
          Length = 431

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|83746302|ref|ZP_00943355.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551]
 gi|207723878|ref|YP_002254276.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum MolK2]
 gi|207742740|ref|YP_002259132.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum
           IPO1609]
 gi|83727052|gb|EAP74177.1| NADH-quinone oxidoreductase chain F [Ralstonia solanacearum UW551]
 gi|206589083|emb|CAQ36045.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum MolK2]
 gi|206594134|emb|CAQ61061.1| nadh dehydrogenaseI(chain f) protein [Ralstonia solanacearum
           IPO1609]
          Length = 431

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 209/421 (49%), Positives = 274/421 (65%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62
           Q  I   L G     L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF T
Sbjct: 10  QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    +
Sbjct: 69  GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   E +  + A++E  A+G LG N    G++  +  HHG GAYICGEETALLES
Sbjct: 128 NYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+
Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKI 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+SG V  P   E  +   F +L+E   G    G   L AVIPGGSS P +PA  M  +
Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVVPADLMMAS 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV
Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++R+  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       + ++ +
Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424

Query: 422 C 422
           C
Sbjct: 425 C 425


>gi|218441075|ref|YP_002379404.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424]
 gi|218173803|gb|ACK72536.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7424]
          Length = 530

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 153/417 (36%), Positives = 249/417 (59%), Gaps = 7/417 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q RI     G +  + +   ++ G + ++ K L E     +I+E++ SGLRGRGG 
Sbjct: 112 FFSRQVRIVREHTGKVDPERIESYIAVGGYQSLYKALYEMSSPEVISEIQKSGLRGRGGG 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+   +  Y++ N DE +PG   DR I+  +PH ++EG  IA++A+GA
Sbjct: 172 GYPTGLKWATVAKMP-GKQKYVICNGDEGDPGAFMDRSILESDPHLVLEGMAIAAYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    G+LGS   +  +D  I +  GAGA++CGEETA
Sbjct: 231 DHGYIYVRAEYPLAIKRLEKAIAQAKKYGILGSQIFESPFDFKIDIRIGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PP+PA VGL+GCPT +NNVE+ A +  I+R+G  WYS  G E ++
Sbjct: 291 LIHSIEGQRGNPRTRPPYPAEVGLWGCPTLINNVETYANIAAIIRKGGDWYSSIGTETSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M IT  E++E+  GG+  G   + AV  GG S  C+PA  
Sbjct: 351 GTKIFALTGKIRNNGLIEVPMGITLREIVEEMGGGVPDG--EVKAVQTGGPSGGCIPAD- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L ++GS +G+  ++VMD+ T +++       F + ESCG+C PCR GT  
Sbjct: 408 LLDTPVDYNSLTKLGSMMGSGGMVVMDKETSMVEVAKFYMEFCQEESCGKCVPCRAGTVQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           M  ++++LV   A   +I+ L  +   ++  ++C LG +A  P+   +  FR   E 
Sbjct: 468 MYELLKKLVNRQATPADIEKLEALCLAVKETSLCGLGQSAPNPVLSTLHYFREEYEA 524


>gi|187929288|ref|YP_001899775.1| NADH-quinone oxidoreductase subunit F [Ralstonia pickettii 12J]
 gi|187726178|gb|ACD27343.1| NADH-quinone oxidoreductase, F subunit [Ralstonia pickettii 12J]
          Length = 431

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 209/421 (49%), Positives = 274/421 (65%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62
           Q  I   L G     L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF T
Sbjct: 10  QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    +
Sbjct: 69  GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   E +  + A++E  A+G LG N    G++  +  HHG GAYICGEETALLES
Sbjct: 128 NYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+
Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKI 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+SG V  P   E  +   F +L+E   G    G   L AVIPGGSS P +PA  M  +
Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVVPADLMMAS 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV
Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++R+  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       + ++ +
Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424

Query: 422 C 422
           C
Sbjct: 425 C 425


>gi|167755792|ref|ZP_02427919.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|237734759|ref|ZP_04565240.1| NADH dehydrogenase [Mollicutes bacterium D7]
 gi|167704731|gb|EDS19310.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|229382087|gb|EEO32178.1| NADH dehydrogenase [Coprobacillus sp. D7]
          Length = 599

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 235/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++++ + +  +  + K++ E     +++ +KASGLRGRGG 
Sbjct: 112 FYNKQKRIALHNCGVIDPENINEYIGKDGYFALAKVVSEMTPQEVVDVIKASGLRGRGGG 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G+KW F       +  Y++ NADE +PG   DR I+   PH++IE   IA++AIGA
Sbjct: 172 GFPAGVKWQFAL-NEPGKEKYVICNADEGDPGAFMDRSILEGNPHSVIEAMAIAAYAIGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IY+R E+    E L  A+++    GL+G N  + G+D D+ +  GAGA++CGEETA
Sbjct: 231 NHGYIYIRAEYPIAVERLNTALEQARELGLIGKNIFESGFDFDLELRLGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++S+EG++G P  KPPFPA+ G++G PT +NNVE+ A +  I++ GA W+   G E + 
Sbjct: 291 LIQSIEGERGMPNPKPPFPAHKGVWGKPTIINNVETYANIAQIIQHGAEWFRSIGTETSP 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +     VE  M  T  E+I +  GG         AV  GG S  CL   Q
Sbjct: 351 GTKVFALGGKIVNTGLVEVPMGTTLREVIYEIGGGCPNH-KRFKAVQTGGPSGGCLTEEQ 409

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + +D L ++GS +G+  +IV+D    ++        F   ESCG+CTPCR GT  
Sbjct: 410 L-DTPIGFDELVKLGSMMGSGGMIVLDEDNCMVDVARFYMDFIVDESCGKCTPCRVGTKR 468

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++  G      +D L  ++  I+   +C LG  A  P+   I  FR      I 
Sbjct: 469 MLELLEQICDGKGTMETLDELELLASTIQDTALCGLGQTAPNPVLSTIHQFRDEYIAHIV 528

Query: 418 QYHRCN 423
              +C 
Sbjct: 529 D-KKCP 533


>gi|313669280|ref|YP_004049564.1| NADH dehydrogenase I chain F [Neisseria lactamica ST-640]
 gi|313006742|emb|CBN88212.1| NADH dehydrogenase I chain F [Neisseria lactamica 020-06]
          Length = 431

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 200/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  ++A+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFESALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|300703647|ref|YP_003745249.1| NADH-quinone oxidoreductase subunit f [Ralstonia solanacearum
           CFBP2957]
 gi|299071310|emb|CBJ42628.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           CFBP2957]
          Length = 431

 Score =  488 bits (1256), Expect = e-136,   Method: Composition-based stats.
 Identities = 208/421 (49%), Positives = 273/421 (64%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62
           Q  I   L G     L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF T
Sbjct: 10  QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N DE EPGT KDRDI+R+ PH LIEG  I  +A+G    +
Sbjct: 69  GLKWSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYAMGITVGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   E +  + A++E  A+G LG N    G++  +  HHG GAYICGEETALLES
Sbjct: 128 NYIHGEIWNEYKIFEQALEEARAAGFLGDNILGTGFNFQLHAHHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+
Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKPNNGGSKI 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+SG V  P   E  +   F +L+E   G        L AVIPGGSS P +PA  M  +
Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RDGKKLKAVIPGGSSAPVVPADLMMAS 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV
Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++R+  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       + ++ +
Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424

Query: 422 C 422
           C
Sbjct: 425 C 425


>gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
 gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
          Length = 596

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + + R  +  + K L E   + +I+E+K SGLRGRGG 
Sbjct: 110 FYKKQLRIALRNCGFIDPENIEECIGRDGYSALAKCLTEMTPEAVIDEIKRSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  +D   Y+V NADE +PG   DR IM  +PH++IE   I  ++IGA
Sbjct: 170 GFPTGLKWEFARKYQAD-QKYVVCNADEGDPGAFMDRSIMEGDPHSVIEAMAICGYSIGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    E L+ A+++    GLLG N     +   I + +GAGA++CGEETA
Sbjct: 229 SKGLVYIRAEYPLAIERLRIAIEQAEKYGLLGENILGTDFSFHIEIRYGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+P  KPPFPA  G    PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 289 LIHSMEGHRGEPTTKPPFPAESGYLNKPTNVNNVETLANIPVILNKGADWFASIGTERSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  GGI+ G     AV  GG S  CL    
Sbjct: 349 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGGGIKNG-KKFKAVQTGGPSGGCLTEKH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+C+PCR G   
Sbjct: 408 L-DTPIDFDNLLAAGSMMGSGGMIVMDEDDCMVAVAKFYLEFIVEESCGKCSPCRIGNKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ R+ +G     ++D L  +S+ I+   +C LG  +  P+   +++F       I 
Sbjct: 467 LLEILTRITEGKGTMEDLDNLRNLSQVIKDTALCGLGQTSPNPVLSTLEHFYDEYVAHIR 526

Query: 418 QYHRCN 423
             H+C 
Sbjct: 527 D-HKCP 531


>gi|254674109|emb|CBA09893.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria
           meningitidis alpha275]
          Length = 433

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 199/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIVRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  +    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEILKMAGGM--RGGKKLKAVIPGGSSAPVLPADIIMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  +   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|312796896|ref|YP_004029818.1| NADH-quinone oxidoreductase chain F [Burkholderia rhizoxinica HKI
           454]
 gi|312168671|emb|CBW75674.1| NADH-quinone oxidoreductase chain F (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 441

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 207/416 (49%), Positives = 271/416 (65%), Gaps = 9/416 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLQDYVARGGYQQLRRILEQKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     E  + A+DE  A+G LG N    G+  ++  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIWEVYERFEQALDEARAAGYLGHNILGSGFSFELHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G +G PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASYGAFGKPTTINNTETFAAVPFLLAIGPQQYLELGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG VN P   E  +   F +L+E   G        + AVIPGGSS P +P  QM    +D
Sbjct: 251 SGDVNLPGNYEVPLGTPFAKLMELAGG----VRGQIKAVIPGGSSAPVVPGEQMMQTDLD 306

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVM+ +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 307 YDSIAKAGSMLGSGAVIVMNDTRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 366

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K+F    E  ++  H
Sbjct: 367 IEHGQGRQEDLDLLNSVAQNIMGRTICALGDAAAMPVRGMLKHFWNEFEYHVEHKH 422


>gi|309379798|emb|CBX21574.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 431

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + +P I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSIPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
 gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
          Length = 597

 Score =  487 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 156/423 (36%), Positives = 242/423 (57%), Gaps = 7/423 (1%)

Query: 4   DQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
            Q RI   N   +   ++ + + R  ++ + K L E  R+ +I EVK SGLRGRGG GF 
Sbjct: 114 KQHRIALENCGYINPDNIEEYIVRHGYEALGKALTEMTREQVIEEVKTSGLRGRGGGGFP 173

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF  +   D   Y++ NADE +PG   DR I+  +PH +IEG +I ++AIGA   
Sbjct: 174 TGLKWSFCARAQGD-KKYVICNADEGDPGAFMDRSILEGDPHCVIEGMMIGAYAIGADEG 232

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY R E+    + L+ A+++  A GLLG N     +   + +  GAGA++CGEETAL+ 
Sbjct: 233 YIYCRAEYPLAIQRLKTAIEKAEAYGLLGKNIMGTDFSFIVHIKEGAGAFVCGEETALMA 292

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G PR +PPFPAN GL+  P+ +NNVE+ A +P I+  G   Y+  G E ++GTK
Sbjct: 293 SIEGQRGMPRPRPPFPANKGLWDKPSNINNVETWANIPYIILHGGDHYASMGTEKSKGTK 352

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G V +   VE  M IT  E+I    GGI        AV  GG S  CL    +  
Sbjct: 353 VFALTGKVKHTGLVEVPMGITLREIIFDIGGGILND-KKFKAVQIGGPSGGCLTEEHL-D 410

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             + Y+ L E+G+ +G+  ++VMD    ++        F + ESCG+CTPCREGT  M+ 
Sbjct: 411 LPVSYESLAEVGAIMGSGGMVVMDEENCMVDVAKFFLEFTQRESCGKCTPCREGTKQMLL 470

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ ++ +G     ++D L++++  ++  ++C LG  A  PI   ++ FR      +    
Sbjct: 471 LLNKISEGKGTMEDLDTLHDLAVMVKEMSLCGLGQTAPNPILTTLRYFRDEYVAHVKD-K 529

Query: 421 RCN 423
           +C 
Sbjct: 530 KCP 532


>gi|34496401|ref|NP_900616.1| NADH-ubiquinone oxidoreductase, chain F [Chromobacterium violaceum
           ATCC 12472]
 gi|34102254|gb|AAQ58620.1| NADH-ubiquinone oxidoreductase, chain F [Chromobacterium violaceum
           ATCC 12472]
          Length = 431

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 206/408 (50%), Positives = 266/408 (65%), Gaps = 6/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
               L   ++RG +  + +IL  +  ++ +I EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWRLDAYVARGGYQALRRILDSKMTQEDVIAEVKNSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+R+ PH+LIEG +IA +A+G    + Y+ GE   + 
Sbjct: 79  PG-DKYVVCNTDEGEPGTFKDRDIIRYNPHSLIEGMIIAGYAMGTKAGYNYIHGEIFEDY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
              + A++E   +G LG N    G++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 LLFEEALEEARKAGFLGQNILGSGFNFELYAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN ES A VP I+R GA  +   G+ NN GTKLFS+SGHVN P 
Sbjct: 198 PPFPASFGLYGKPTTINNTESFASVPFIIRDGAQTFLEKGKPNNGGTKLFSVSGHVNRPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E ++   F EL+E   G        L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEIALGTPFSELLEMAGGM--RDGKKLKAVIPGGSSAPVLPADIMMQCTMDYDSIAKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVIVM+    ++KA+ RL+ FY  ESCGQCTPCREGTGW+ +V+ R+  G  +K
Sbjct: 316 SMLGSGAVIVMNEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYKVIHRIASGQGRK 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +++LL  V  N+ GRTICAL DAA +P++   K+FR   E  I+   
Sbjct: 376 GDLELLDSVGNNMAGRTICALADAAVFPVRSFTKHFRNEFEYAIEHGK 423


>gi|306821643|ref|ZP_07455241.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550388|gb|EFM38381.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 527

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 154/425 (36%), Positives = 234/425 (55%), Gaps = 7/425 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAG 59
              Q RI   N   +  + + D ++ G + ++ K+L++  +  +  E+K S LRGRGGAG
Sbjct: 43  FEKQTRIALKNYDIINPEKIEDYIAFGGYYSLAKVLQENDKTKVCEEIKKSNLRGRGGAG 102

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW    K  +D   Y++ NADE +PG   DR I+  +PH+++EG  IA F  GA 
Sbjct: 103 FPTGKKWEAAMKQNTD-QKYIICNADEGDPGAYMDRSILEGDPHSVLEGMAIAGFVTGAD 161

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             FIYVR E+ +   +L  A+ +   + LLG N    G++ ++ +  GAGA++CGE TAL
Sbjct: 162 SGFIYVRAEYPKAVATLITAIYQAKDNNLLGDNILGSGFNFNVELRLGAGAFVCGEGTAL 221

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ES+EGK+G PR K       GL+G PT +NNVE+ A V  I+ +GA W+   G E + G
Sbjct: 222 MESIEGKRGMPRNKEFRTTVKGLWGKPTVINNVETYANVAQIIEKGADWFKSIGTEKSSG 281

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F++ G +N P  VE  M     +++    G    G     AV  GG S  C+P   +
Sbjct: 282 TKVFALVGKINNPGLVEVPMGTKISDVVFDIGG-GIPGGKKAKAVQTGGPSGGCIPTD-L 339

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D++ LKE+GS +G+  ++VMD    ++        F   ESCG+CTPCR G   +
Sbjct: 340 FDTGLDFESLKEIGSIMGSGGMVVMDEDDCMVDISRFFLEFSVDESCGKCTPCRIGNKRL 399

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++++ V G A   +ID L E+S  I   ++C LG A+  PI   +K FR    +   +
Sbjct: 400 LEMLDKFVSGNAVMSDIDKLEELSNMICDTSLCGLGQASPNPILSTLKYFRQEYIDH-AK 458

Query: 419 YHRCN 423
             RC 
Sbjct: 459 DKRCT 463


>gi|256821520|ref|YP_003145483.1| NADH-quinone oxidoreductase subunit F [Kangiella koreensis DSM
           16069]
 gi|256795059|gb|ACV25715.1| NADH-quinone oxidoreductase, F subunit [Kangiella koreensis DSM
           16069]
          Length = 431

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 214/413 (51%), Positives = 267/413 (64%), Gaps = 6/413 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  +L    S G +    KIL +    + II E+K S LRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPWTLKTYESAGGYRMWRKILAEKTPPEEIIEELKLSALRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGT KDRDI+R  PH LIEG  I  + +GA   + Y+R
Sbjct: 67  SFMPRHAPG-QKYVVCNSDEGEPGTFKDRDILRFNPHQLIEGMAIGGYVMGATVGYNYMR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF    +  + A+ E Y +GLLG N      D D+  H GAGAYICGEETALLESLEGK
Sbjct: 126 GEFYEPIDRFEQALKEAYKAGLLGKNILGSDVDFDLHSHIGAGAYICGEETALLESLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPAN GLYG PT VNN ES A VP IL +G  W+   G+ENN GTK+FS+S
Sbjct: 186 KGQPRFKPPFPANYGLYGRPTNVNNTESYASVPVILDKGGKWFLELGKENNGGTKIFSVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHVN P   E  +   F +L++   G        L AVIPGGSS P LPA  M    MDY
Sbjct: 246 GHVNKPGNYEIGLGTPFKDLLDMAGGM--KDGKKLKAVIPGGSSAPVLPADVMMDITMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG+ AVI+MD  TD+++ + R++ FY  ESCGQCTPCREGTGWM R++ R+
Sbjct: 304 DAIGKAGSMLGSGAVIIMDEDTDMVEILGRIAHFYYEESCGQCTPCREGTGWMSRMIHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             G  ++ ++  L E++ NI GRTICALGDAAA P+Q  IK F+   E +I+Q
Sbjct: 364 ANGQGKQSDLKDLDEIAGNIMGRTICALGDAAAMPVQSFIKCFKQEFEAKIEQ 416


>gi|169830327|ref|YP_001716309.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637171|gb|ACA58677.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 656

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 151/427 (35%), Positives = 235/427 (55%), Gaps = 8/427 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
               Q R+     G +  + + +  + G +  +  +L +   + +I+ V  SGLRGRGGA
Sbjct: 142 FYRHQQRVVLAYCGLINPEDIREYFAIGGYQALADVLTRYTPEEVIDAVTRSGLRGRGGA 201

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW+   +   + P Y+V N DE +PG   DR ++  +PH+++EG  IA++A+GA
Sbjct: 202 GFPTGRKWAAARRAEGE-PKYVVCNGDEGDPGAFMDRSVLEGDPHSVLEGMTIAAYAVGA 260

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L+ A+ +     +LG +    G++ DI +  GAGA++CGE TA
Sbjct: 261 GHGYIYVRAEYPLAVERLKIAIAQARQHRVLGQDIMGTGFNFDIEIFRGAGAFVCGESTA 320

Query: 178 LLESLEGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           L+ SLEG +G P+  P P     G+ G PT +NNV+S A VP I+ RG  W++  G E +
Sbjct: 321 LVRSLEGFRGMPKAMPRPRTTEEGIGGKPTLLNNVKSFAYVPQIITRGPEWFASMGTETS 380

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GT +F+++G       +E  M IT  E+I    GG   G +   AV  GG S  CLP  
Sbjct: 381 KGTAVFALTGKAKNTGLIEVPMGITLREIIFNIGGGTSTGQE-FKAVQTGGPSGGCLPKE 439

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D+D L   GS +G+  ++VMD+ T ++        F  +ESCGQCTPCR GT 
Sbjct: 440 -LLDMPVDFDSLTSAGSMMGSGGMVVMDQDTCMVDVARYFLEFTVNESCGQCTPCRVGTY 498

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M++++E + +G  +  ++ LL ++ K I   +IC LG  A  P+   ++ FR   E  I
Sbjct: 499 QMLKILEDITQGRGKPTDLSLLEDIGKAIIAGSICGLGQTAPNPVLSTLRYFRSEYEAHI 558

Query: 417 DQYHRCN 423
            +   C 
Sbjct: 559 GE-KSCP 564


>gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
 gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
          Length = 624

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q R+  +  G +  +S+ + ++ G +    K L       +   +K S LRGRGG 
Sbjct: 138 FYSRQTRLVLHHCGDIDAESIDEYIAMGGYQAFRKALFTMEPADVCRLIKLSNLRGRGGG 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+  G KW  +     D   Y+V N DE +PG   DR +M  +PH+++EG +IA FA  A
Sbjct: 198 GYPAGSKWEQVLSRP-DEIKYVVCNGDEGDPGAFMDRSVMEGDPHSVLEGMLIAGFATKA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L  A++     GLLG N    G+  DI V+ GAGA++CGE +A
Sbjct: 257 TQGYIYVRAEYPVAVERLNKAIEAARGVGLLGENILGSGFSFDIRVNRGAGAFVCGEGSA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I++ G  W+ G G EN+ 
Sbjct: 317 LTASIEGKRGMPRVKPPRTTEHGLWNRPTVLNNVETFANVPRIVQNGGDWFRGIGPENSP 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+ISG+VN    +E  M  T  E+I    GGIRGG     AV  GG S  CL +  
Sbjct: 377 GTKVFAISGNVNNTGLIEVPMGTTLREVIFDIGGGIRGG-KAFKAVQIGGPSGGCLTSEH 435

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK++G+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  
Sbjct: 436 L-DLPLDFDSLKKVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTRR 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+V+G  +  ++D+L E++  I    +C LG +AA P+   +K FR      + 
Sbjct: 495 MLEILTRIVEGKGEMEDLDMLEELADTISNTALCGLGKSAANPVVSTLKYFRDEYIAHVR 554

Query: 418 QYHRCN 423
              +C 
Sbjct: 555 D-KKCP 559


>gi|118462706|ref|YP_883190.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium 104]
 gi|254776460|ref|ZP_05217976.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118163993|gb|ABK64890.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium avium 104]
          Length = 453

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 207/414 (50%), Positives = 270/414 (65%), Gaps = 8/414 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L      G +  + K L    D +I  VK SGLRGRGGAGFSTG KWSF+P+  + 
Sbjct: 31  ESWTLQTYHRHGGYAAMKKALAMEPDAVIGMVKDSGLRGRGGAGFSTGTKWSFIPQGDTG 90

Query: 76  ---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
              +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI A+ AFIYVRGE +  
Sbjct: 91  AAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRANHAFIYVRGEVLPV 150

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQ AV E YA+G LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 151 LRRLQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRL 210

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P
Sbjct: 211 RPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRP 270

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+  +
Sbjct: 271 GQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGGV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 328 GSMLGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGT 387

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +ID L ++S  I G++ CALGD AA P+   IK FR      ++   RC F 
Sbjct: 388 AEDIDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAHVEN-GRCPFD 440


>gi|15676170|ref|NP_273302.1| NADH dehydrogenase I chain F [Neisseria meningitidis MC58]
 gi|7225468|gb|AAF40700.1| NADH dehydrogenase I, F subunit [Neisseria meningitidis MC58]
 gi|316985174|gb|EFV64126.1| NADH oxidoreductase, F subunit [Neisseria meningitidis H44/76]
 gi|325141082|gb|EGC63585.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           CU385]
 gi|325199449|gb|ADY94904.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           H44/76]
          Length = 433

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|84494925|ref|ZP_00994044.1| putative NADH dehydrogenase I chain F [Janibacter sp. HTCC2649]
 gi|84384418|gb|EAQ00298.1| putative NADH dehydrogenase I chain F [Janibacter sp. HTCC2649]
          Length = 437

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/411 (48%), Positives = 257/411 (62%), Gaps = 5/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  +L    +   +  + K L      ++   K SGLRGRGGAGF TGMKW F+P     
Sbjct: 17  QSWTLETYENNDGYKALKKALATPPADLVQMTKDSGLRGRGGAGFPTGMKWGFLP-PPDG 75

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YLVVNADESEPGTCKD  +M   P  LIEGCVI S+AIG + AFIY+RGE +     
Sbjct: 76  GPRYLVVNADESEPGTCKDIPLMMAAPQFLIEGCVITSYAIGCNHAFIYLRGEVVHVYRR 135

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV+E YA+G LG N    G+D+DI VH GAGAYICGEETALL+SLEG++GQPRLKPP
Sbjct: 136 LLRAVEEAYAAGHLGKNIHGSGFDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 195

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVESIA +P I   GA W+S  G E ++G  +FS+SGHV +P   
Sbjct: 196 FPAVAGLYARPTVVNNVESIASIPPIFLHGADWFSDMGTEKSQGFGIFSLSGHVKHPGQY 255

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL++   GG+R     L    PGGSS P   A  +    +D++ +   GS 
Sbjct: 256 EAPLGITLRELLDM-AGGMRDPEKALKFWTPGGSSTPLFTAEHL-DTPLDFESVAAAGSM 313

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ +++ RL  G   + +
Sbjct: 314 LGTRALQIFDETTCVVRAVDRWTDFYKHESCGKCTPCREGTWWLKQILGRLEHGQGSEED 373

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L ++  NI GR+ CALGD A  PI   I+ FR      + +   C F 
Sbjct: 374 LDKLLDICDNILGRSFCALGDGATSPITSSIQYFREEFIAHLTEGS-CPFD 423


>gi|325129044|gb|EGC51894.1| NADH:quinone oxidoreductase, F subunit [Neisseria meningitidis
           N1568]
          Length = 431

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL     +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMVGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|313679590|ref|YP_004057329.1| NADH dehydrogenase subunit f [Oceanithermus profundus DSM 14977]
 gi|313152305|gb|ADR36156.1| NADH dehydrogenase subunit F [Oceanithermus profundus DSM 14977]
          Length = 439

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 190/421 (45%), Positives = 255/421 (60%), Gaps = 13/421 (3%)

Query: 6   DRIFTNLYGL----QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60
            R    LY         +L   +  G ++    +L  K  + ++ EVK SGLRGRGGAGF
Sbjct: 12  PRFTPTLYAHVGKPNSWTLDYYLGHGGYETARAVLTGKQPEEVVEEVKKSGLRGRGGAGF 71

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP     + HYL+ NADESEP + KDR +M  +PH LIEG +I  +AI A  
Sbjct: 72  PTGVKWSFMP--NDGQQHYLIANADESEPASFKDRYLMEDDPHQLIEGMIIGGYAIRATK 129

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+RGE+ +  + L AA+ E Y  G LG N    G+D D+ VH GAGAYICGEETAL+
Sbjct: 130 GYVYIRGEYRKAYDRLTAAIREAYERGYLGKNLFGSGFDFDLYVHRGAGAYICGEETALM 189

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG +  PR+KPPFPA  GLYG PTT+NN+ES+A V  IL+RGA W++  G E ++G 
Sbjct: 190 NSLEGLRANPRMKPPFPAQSGLYGKPTTINNIESLASVVHILQRGADWFAQMGTERSKGM 249

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQM 298
           KLF +SG    P   E  +   F ELI    GG     + + A IPGGSS P LP   + 
Sbjct: 250 KLFQVSGPARRPGVYELPLGTPFRELIYDWAGGPT---EPIKAFIPGGSSTPLLPFTDEY 306

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT-GW 357
               MDY+ L    S LGT  V+++  S  I+ A+W L  FY HESCG+CTPCREG  GW
Sbjct: 307 LDLPMDYESLVAAKSALGTGGVVLIPESVCIVDAMWNLIRFYGHESCGKCTPCREGVSGW 366

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + ++ E+  +G A + ++  + ++   IEGR+ C L DAA WPI+G +++FR      I+
Sbjct: 367 LPQLFEKFERGQATQEDLKTMEDLLDQIEGRSFCPLADAAVWPIRGALRHFRDEFLHHIE 426

Query: 418 Q 418
            
Sbjct: 427 H 427


>gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum]
          Length = 597

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 158/427 (37%), Positives = 241/427 (56%), Gaps = 8/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRG-HWDNVDKIL-EKGRDWIINEVKASGLRGRGG 57
               Q RI   +   +Q + ++D +     ++ + K + +  R+ +I E+K SGLRGRGG
Sbjct: 111 FYNKQVRIALEHCGRIQAEDINDYIETAEGYEAIKKAITKMTREDVIEEIKRSGLRGRGG 170

Query: 58  AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
            GF TG+KW F      D   Y++ NADE +PG   DR ++  +PH +IE  +I  +AIG
Sbjct: 171 GGFPTGLKWQFAYNAPGD-QKYVICNADEGDPGAFMDRSVLEGDPHAVIEAMMITGYAIG 229

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A+  +IY+R E+    + L+ A+ +   SG LG N     ++ DI +  GAGA++CGEET
Sbjct: 230 ANHGYIYIRAEYPVAIKRLEIALAQARESGYLGKNVMGTDFEFDIELKLGAGAFVCGEET 289

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EGK+G    KPPFPAN G++  PT +NNVE++A VP I+ +GA W++  G E +
Sbjct: 290 ALINSIEGKRGMANPKPPFPANEGVWKKPTIINNVETLANVPKIILKGADWFASIGTEKS 349

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F++ G +N    VE  M  T  E+I +  GGI  G     AV  GG S  C+ A 
Sbjct: 350 KGTKVFALGGKINNVGLVEVPMGTTLREIIYEVGGGIPNG-KAFKAVQTGGPSGGCITAD 408

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D+D L  +GS +G+  +IVMD    ++        F   ESCG+CTPCREGT 
Sbjct: 409 YL-DTQIDFDSLTALGSMMGSGGMIVMDEDNCMVDIAKFFLDFTVEESCGKCTPCREGTK 467

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ER+ +G     ++D L  ++  I+   +C LG  A  P+   +K FR      +
Sbjct: 468 RMLEILERISEGHGTLEDLDKLERLANTIKSTALCGLGQTAPNPVLSTLKYFRDEYVAHV 527

Query: 417 DQYHRCN 423
               +C 
Sbjct: 528 VD-KKCP 533


>gi|261856545|ref|YP_003263828.1| NADH-quinone oxidoreductase, F subunit [Halothiobacillus
           neapolitanus c2]
 gi|261837014|gb|ACX96781.1| NADH-quinone oxidoreductase, F subunit [Halothiobacillus
           neapolitanus c2]
          Length = 429

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 206/416 (49%), Positives = 263/416 (63%), Gaps = 7/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  +   +  +L   +  G +    KIL +      II E+K S LRGRGGAGF TG+KW
Sbjct: 7   FATMQFDEPWTLESYLKTGGYSAWRKILAEKTDPALIIEELKTSNLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DESEPGT KDR I+ + PH L+EG  IA + IGA   + Y+R
Sbjct: 67  SFMPRNAPG-QKYVVCNSDESEPGTAKDRQILLNNPHALVEGMAIAGYTIGATVGYNYMR 125

Query: 127 GEFI-RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           GEF        + AV E Y  GLLG N    G D D+    GAGAYICGEETALLESLEG
Sbjct: 126 GEFTDLVFRRFETAVKEAYELGLLGKNLQGSGIDFDLYGSLGAGAYICGEETALLESLEG 185

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPAN GLYG PTTVNN E+++ VP I+R G  W++  G  N+ G KLFS+
Sbjct: 186 KKGQPRFKPPFPANFGLYGRPTTVNNTETLSSVPAIMRNGGQWFADLGVPNSGGLKLFSV 245

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHVN P   E  M + F EL+    G        L AVIPGG+S P +P   M    MD
Sbjct: 246 SGHVNKPGVFEIPMGLPFSELLSMAGG--VREGRKLKAVIPGGTSTPVVPGSVMMQTNMD 303

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + G+ LG+  +IV+D S  +++A+ R+S FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 304 YDSIAKSGTFLGSGGLIVIDDSACMVEALRRISRFYYSESCGQCTPCREGTGWLYRMLTR 363

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +V+G     +++ L +V+  IEGRTICALGDAAA P++  +K+FR   E  I+  H
Sbjct: 364 VVEGKGAMADLNRLDDVASKIEGRTICALGDAAAVPVRSFLKHFRHEFEYYIEHGH 419


>gi|466365|gb|AAA87056.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
           fructosovorans]
          Length = 490

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 152/425 (35%), Positives = 233/425 (54%), Gaps = 7/425 (1%)

Query: 3   TDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
             Q RI T N   +  +S+ D ++   ++ + K+L      +++ VK SGLRGRGGAGF 
Sbjct: 8   KKQLRIATRNCGFIDPESIDDYIALRGYEGLAKVLTMTPAEVVDLVKRSGLRGRGGAGFP 67

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW       +D   Y+V NADE +P    DR ++  +PH+++E   I  +AIGA   
Sbjct: 68  TGIKWGIALGNKAD-QKYMVCNADEGDPE-FMDRAVLEGDPHSVVEAMAIGGYAIGATRG 125

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            +Y+R E+    + L+ A+D+    GLLG N    G+D DI + +GAGA++CGEETAL+ 
Sbjct: 126 TVYIRAEYPLAIKRLKKAIDDAREYGLLGENIFGSGFDFDIELKYGAGAFVCGEETALIR 185

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+P  KPPFPA  G +  PT VNNVE+ A +P I+  GA W+SG G   ++GTK
Sbjct: 186 SMEGKRGEPVTKPPFPAQSGYWEKPTIVNNVETFANIPAIIINGADWFSGIGTATSKGTK 245

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +     +E  M I+  E+I    GG         AV  GG S   L A +   
Sbjct: 246 VFALAGKIQNVGLIEVPMGISLREVIFDIGGGCP-DGKAFKAVQTGGPSGGAL-ANKDLD 303

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+ L    S +G+  ++VMD    ++        F   E+CG+CTPCR G+  +  
Sbjct: 304 VAIDYESLAACKSIMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYE 363

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R+ KG   + ++D L  +S+ I+   +C LG     PI   +  F    E  +D   
Sbjct: 364 ILDRITKGKGTRADLDRLKSLSEIIKDTALCGLGQTMPNPILSTMDTFANEYEAHVDD-K 422

Query: 421 RCNFQ 425
           +C   
Sbjct: 423 KCPAH 427


>gi|254797065|ref|YP_003081903.1| NADH oxidoreductase (quinone), f subunit [Neorickettsia risticii
           str. Illinois]
 gi|254590311|gb|ACT69673.1| NADH oxidoreductase (quinone), f subunit [Neorickettsia risticii
           str. Illinois]
          Length = 413

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 251/416 (60%), Positives = 308/416 (74%), Gaps = 7/416 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +DRIF+N+   +  +LS+++ RG W +  K L+K  +WII E+K SGLRGRGGAGF
Sbjct: 1   MLKPEDRIFSNIQKRESITLSEALRRGDWKDTKKFLDKEPEWIIEEIKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKV-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
            TG+KWSFMPK   + +P YLVVNADESEPGTCKDRDI+R EPH LIEG V+AS A+   
Sbjct: 61  PTGIKWSFMPKEKEAGKPSYLVVNADESEPGTCKDRDIIRFEPHKLIEGIVLASHAMRID 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            ++IY+RGEF  E   L+  + E   + L+    K      I VH GAGAYICGEETALL
Sbjct: 121 VSYIYIRGEFYNESLVLEKVIHEAMDAHLIPEQLK------IFVHRGAGAYICGEETALL 174

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR+KPPFPA  GLYG PTT+NNVESIA VPTIL RG+ W++  G +N+ GT
Sbjct: 175 ESLEGKRGMPRMKPPFPAGCGLYGKPTTINNVESIASVPTILSRGSDWFANLGVKNSCGT 234

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE++ I    LIEK+ GG+ GGWDNLLAVIPGGSSVP +      
Sbjct: 235 KIFCISGHVNKPCNVEEALGIPLKFLIEKYAGGVIGGWDNLLAVIPGGSSVPMITKEVAE 294

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MD+D L+ +GS LGT  +IVM++ TDII+AI RLS FY HESCGQCTPCREGTGW+ 
Sbjct: 295 TVTMDFDSLRAVGSALGTGGIIVMNKETDIIRAIERLSHFYMHESCGQCTPCREGTGWLW 354

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            +M++L +G  +K ++D L +++K IEG TICALGDAAAWPIQGLIKNFR  IE R
Sbjct: 355 SLMKQLSEGKGKKSDVDFLLQLTKQIEGNTICALGDAAAWPIQGLIKNFRGEIEAR 410


>gi|163855992|ref|YP_001630290.1| NADH dehydrogenase I, 51 kDa subunit, chain F [Bordetella petrii
           DSM 12804]
 gi|163259720|emb|CAP42021.1| NADH dehydrogenase I, 51 kDa subunit, chain F [Bordetella petrii]
          Length = 455

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/418 (50%), Positives = 269/418 (64%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMK 65
           I  +L G     L D + RG ++ + KIL      + +I EVKASGLRGRGGAGF TG+K
Sbjct: 37  ILADLDG-NNWHLQDYVKRGGYEALRKILSSGMKPEDVIAEVKASGLRGRGGAGFPTGLK 95

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    + Y+
Sbjct: 96  WSFMPRAFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYI 154

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     +  + A++E  A+G LG N     +   +   HG GAYICGEETALLESLEG
Sbjct: 155 HGEIFEVYQRFEEALEEARAAGFLGDNILGSEFSFQLHAFHGYGAYICGEETALLESLEG 214

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FSI
Sbjct: 215 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKVFSI 274

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V  P   E  +   F +L+E   G    G   L AVIPGGSS P LPA  M    MD
Sbjct: 275 TGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVLPADIMMDITMD 332

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 333 YDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHR 392

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +  G  ++ ++DLL  V+ NI GRTICALGDAAA P++G +K++R      I ++  C
Sbjct: 393 IEHGQGRQEDLDLLDSVAGNIMGRTICALGDAAAMPVRGFLKHYRDEFAHHI-EHKSC 449


>gi|254805712|ref|YP_003083933.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha14]
 gi|254669254|emb|CBA08142.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha14]
          Length = 433

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL     +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMVGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|41409304|ref|NP_962140.1| hypothetical protein MAP3206 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398124|gb|AAS05754.1| NuoF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 453

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 207/414 (50%), Positives = 270/414 (65%), Gaps = 8/414 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L      G +  + K L    D +I  VK SGLRGRGGAGFSTG KWSF+P+  + 
Sbjct: 31  ESWTLQTYHRHGGYTAMKKALAMEPDAVIGMVKDSGLRGRGGAGFSTGTKWSFIPQGDTG 90

Query: 76  ---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
              +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI A+ AFIYVRGE +  
Sbjct: 91  AAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRANHAFIYVRGEVLPV 150

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQ AV E YA+G LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 151 LRRLQNAVAEAYAAGYLGRDIDGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRL 210

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P
Sbjct: 211 RPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRP 270

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+  +
Sbjct: 271 GQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGGV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 328 GSMLGTKALEIFDETTCVVRAVRRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGT 387

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +ID L ++S  I G++ CALGD AA P+   IK FR      ++   RC F 
Sbjct: 388 AEDIDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAHVEN-GRCPFD 440


>gi|300853892|ref|YP_003778876.1| NADH dehydrogenase I subunit F [Clostridium ljungdahlii DSM 13528]
 gi|300434007|gb|ADK13774.1| NADH dehydrogenase I, F subunit [Clostridium ljungdahlii DSM 13528]
          Length = 599

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 153/426 (35%), Positives = 226/426 (53%), Gaps = 8/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +I   N+  +   SL D + RG +  + K +     + ++ E+  SGLRGRGGA
Sbjct: 112 FCKRQYKIALRNVGEIDPISLEDYVERGGYKALKKAISSMKPEDVLEEITKSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW     + +    Y+V N DE +PG   DR IM  +P+++IEG  + ++A+G 
Sbjct: 172 GFPTGRKWKTAADIDTSPI-YVVCNGDEGDPGAFMDRSIMEGDPNSVIEGMTLCAYAVGG 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F Y+R E+    E++Q A+++     LLG+N     +  DI +  G GA++CGE TA
Sbjct: 231 TNGFAYIRDEYGLAVENMQKAINKAKDENLLGNNILGTDFSFDIQIVRGGGAFVCGESTA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENN 236
           L+ S+EG  G+PR K       GL+G PT +NNVE+ A VP I+ +G  WY   G  E +
Sbjct: 291 LMSSIEGMVGEPRAKYIHTTEKGLWGQPTVLNNVETWANVPIIIEKGGDWYHAIGTMEKS 350

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+FS+ G V     VE  M  T  E+I    GG+        AV  GG S  CLPA 
Sbjct: 351 KGTKVFSLVGKVKNTGLVEVPMGTTLREIIYDIGGGVLNDRK-FKAVQIGGPSGGCLPAE 409

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DYD L +  S +G+  +IVMD  T ++        F   ESCG+C PCREG  
Sbjct: 410 YL-DLPVDYDTLVKADSMMGSGGMIVMDDRTCMVDVTRYYLSFLAEESCGKCVPCREGVK 468

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++  +  G  ++ +I+ L E+       ++C+LG +A  P+   I+ FR   EE I
Sbjct: 469 RMLEILTDICNGDGKEGDIEELLEICSMTSKASLCSLGKSAPNPVIASIRYFRDEFEEHI 528

Query: 417 DQYHRC 422
               RC
Sbjct: 529 KN-KRC 533


>gi|302553431|ref|ZP_07305773.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471049|gb|EFL34142.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 449

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/425 (47%), Positives = 261/425 (61%), Gaps = 15/425 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
             D+DR           +L        ++ + K L    D +I  VK SGLRGRGGAGF 
Sbjct: 24  FWDEDR---------SWTLDVYRRHDGYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW F+P+    +PHYLVVNADESEPGTCKD  ++   PH+LIEG +IA +AI +  A
Sbjct: 75  TGMKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACYAIRSSHA 133

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+RGE +     L +AV E Y +G LG N    G D+DI VH GAGAYICGEETALL+
Sbjct: 134 FIYLRGEVVPVLRRLHSAVREAYEAGFLGENILGSGLDLDITVHAGAGAYICGEETALLD 193

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++GQPRL+PPFPA  GLY CPT VNNVESIA VP I++RG  W+   G E + G  
Sbjct: 194 SLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAIMQRGKEWFRSMGSEKSPGFT 253

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGHV  P   E  + IT  +L++   G        L    PGGSS P      +  
Sbjct: 254 LYSLSGHVASPGQYEAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-D 310

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+G+   GS LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++
Sbjct: 311 VPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQ 370

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++  +  G  Q  ++D L +++ NI G++ CALGD AA PI   +K FR   E+ I    
Sbjct: 371 LLRDIEAGKGQMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRDEYEQHITGRG 430

Query: 421 RCNFQ 425
            C F 
Sbjct: 431 -CPFD 434


>gi|59802067|ref|YP_208779.1| hypothetical protein NGO1746 [Neisseria gonorrhoeae FA 1090]
 gi|194099642|ref|YP_002002773.1| NuoF [Neisseria gonorrhoeae NCCP11945]
 gi|239999839|ref|ZP_04719763.1| NuoF [Neisseria gonorrhoeae 35/02]
 gi|240014998|ref|ZP_04721911.1| NuoF [Neisseria gonorrhoeae DGI18]
 gi|240017446|ref|ZP_04723986.1| NuoF [Neisseria gonorrhoeae FA6140]
 gi|240081585|ref|ZP_04726128.1| NuoF [Neisseria gonorrhoeae FA19]
 gi|240113867|ref|ZP_04728357.1| NuoF [Neisseria gonorrhoeae MS11]
 gi|240116598|ref|ZP_04730660.1| NuoF [Neisseria gonorrhoeae PID18]
 gi|240118822|ref|ZP_04732884.1| NuoF [Neisseria gonorrhoeae PID1]
 gi|240122067|ref|ZP_04735029.1| NuoF [Neisseria gonorrhoeae PID24-1]
 gi|240124361|ref|ZP_04737317.1| NuoF [Neisseria gonorrhoeae PID332]
 gi|240126573|ref|ZP_04739459.1| NuoF [Neisseria gonorrhoeae SK-92-679]
 gi|240129038|ref|ZP_04741699.1| NuoF [Neisseria gonorrhoeae SK-93-1035]
 gi|254494622|ref|ZP_05107793.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
 gi|260439641|ref|ZP_05793457.1| NuoF [Neisseria gonorrhoeae DGI2]
 gi|268595649|ref|ZP_06129816.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae 35/02]
 gi|268597681|ref|ZP_06131848.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae FA19]
 gi|268599933|ref|ZP_06134100.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
 gi|268602267|ref|ZP_06136434.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
 gi|268604533|ref|ZP_06138700.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
 gi|268682988|ref|ZP_06149850.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
 gi|268685153|ref|ZP_06152015.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
 gi|268687416|ref|ZP_06154278.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291042882|ref|ZP_06568623.1| NADH-quinone oxidoreductase subunit F [Neisseria gonorrhoeae DGI2]
 gi|293398107|ref|ZP_06642312.1| NADH oxidoreductase (quinone), F subunit [Neisseria gonorrhoeae
           F62]
 gi|59718962|gb|AAW90367.1| putative NADH dehydrogenase I chain F [Neisseria gonorrhoeae FA
           1090]
 gi|193934932|gb|ACF30756.1| NuoF [Neisseria gonorrhoeae NCCP11945]
 gi|226513662|gb|EEH63007.1| NADH dehydrogenase I [Neisseria gonorrhoeae 1291]
 gi|268549038|gb|EEZ44456.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae 35/02]
 gi|268551469|gb|EEZ46488.1| NADH dehydrogenase subunit I F [Neisseria gonorrhoeae FA19]
 gi|268584064|gb|EEZ48740.1| NADH dehydrogenase I [Neisseria gonorrhoeae MS11]
 gi|268586398|gb|EEZ51074.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID18]
 gi|268588664|gb|EEZ53340.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID1]
 gi|268623272|gb|EEZ55672.1| NADH dehydrogenase I [Neisseria gonorrhoeae PID332]
 gi|268625437|gb|EEZ57837.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-92-679]
 gi|268627700|gb|EEZ60100.1| NADH dehydrogenase I [Neisseria gonorrhoeae SK-93-1035]
 gi|291013316|gb|EFE05282.1| NADH-quinone oxidoreductase subunit F [Neisseria gonorrhoeae DGI2]
 gi|291611370|gb|EFF40440.1| NADH oxidoreductase (quinone), F subunit [Neisseria gonorrhoeae
           F62]
 gi|317165127|gb|ADV08668.1| hypothetical protein NGTW08_1711 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 433

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVRRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFAHYIEH 421


>gi|320581561|gb|EFW95781.1| NADH-ubiquinone oxidoreductase subunit, mitochondrial precursor
           [Pichia angusta DL-1]
          Length = 488

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 255/433 (58%), Positives = 320/433 (73%), Gaps = 11/433 (2%)

Query: 2   LTDQDRIFTNLY-------GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRG 54
           L DQDRIF NLY       G     L  +M  G W    +IL KG  WII+E+KASGLRG
Sbjct: 20  LADQDRIFQNLYLGNSKKHGTPSYDLKTAMKIGDWYKTKEILLKGDTWIIDEIKASGLRG 79

Query: 55  RGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           RGGAGF +G+KWSFM     ++   P YLVVNADE EPGTCKDR+IMR EPH L+EGC++
Sbjct: 80  RGGAGFPSGLKWSFMNPPGWNKNVGPRYLVVNADEGEPGTCKDREIMRKEPHKLVEGCLV 139

Query: 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAY 170
           A  A+ A  A+IY+RGEF  E  +LQ A+++ Y +G LG ++   G+  D+ +H G GAY
Sbjct: 140 AGRAMNATAAYIYIRGEFYNEAVTLQNAINQAYEAGFLGPDACGSGFAFDVYIHRGMGAY 199

Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230
           +CGEETAL+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG  W+S 
Sbjct: 200 VCGEETALIESLEGKAGKPRLKPPFPAGVGLFGRPSTVTNVETVAVAPTICRRGGKWFSS 259

Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
           FGRE N GTKLF ISG+VN PCTVEE MSI+  ELI+KHCGG++GGWDNLLAVIPGGSS 
Sbjct: 260 FGRERNSGTKLFCISGNVNEPCTVEEEMSISMRELIDKHCGGVKGGWDNLLAVIPGGSST 319

Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
           P L        +MDYD L++ GSGLGTAAVIV ++  D+++ I RL  FYKHESCGQCTP
Sbjct: 320 PILNKETCDDILMDYDALRDAGSGLGTAAVIVFNKQADVLRGIQRLLAFYKHESCGQCTP 379

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
           CREG+ ++ ++M+R   G AQ++EID   E++K +EG +ICA+G+A +WP QGL+KNF+P
Sbjct: 380 CREGSTYLSKMMDRFYVGQAQEKEIDKALELTKKVEGHSICAMGEAFSWPYQGLVKNFKP 439

Query: 411 LIEERIDQYHRCN 423
           L+ ERI +Y R N
Sbjct: 440 LMIERIREYKRQN 452


>gi|269128608|ref|YP_003301978.1| NADH-quinone oxidoreductase subunit F [Thermomonospora curvata DSM
           43183]
 gi|268313566|gb|ACY99940.1| NADH-quinone oxidoreductase, F subunit [Thermomonospora curvata DSM
           43183]
          Length = 433

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 199/411 (48%), Positives = 258/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L+     G +  + K L    D I+  VK SGLRGRGGAGF TGMKW F+P   S 
Sbjct: 17  DSFTLAAYERTGGYQAMRKALRMEPDAIVQAVKDSGLRGRGGAGFPTGMKWGFLP-PNSP 75

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +P YLVVNADESEPGTCKD  +M   PH L+EG +I+++AI +H AFIYVRGE +     
Sbjct: 76  KPRYLVVNADESEPGTCKDIPLMMANPHVLVEGIIISAYAIRSHHAFIYVRGEVLHVIRR 135

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQ AV E Y +G LG +    GYD+D++VH GAGAYICGEETALL+SLEG +GQPRLKPP
Sbjct: 136 LQQAVAEAYQAGYLGKDILGTGYDLDVVVHTGAGAYICGEETALLDSLEGYRGQPRLKPP 195

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLYG PT +NNVESI+ VP+I+  G  W++  G E ++G  +FS+SGHV  P   
Sbjct: 196 FPAVAGLYGGPTVINNVESISSVPSIVANGPDWFASMGTEKSKGFGIFSLSGHVTRPGQY 255

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL+E   G       +L    PGGSS P      M    +D++ +   GS 
Sbjct: 256 EAPLGITLRELLEMAGGM--RKGRDLKFWTPGGSSTPLFTKEHM-DVPLDFESVGAAGSM 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R S FY HESCG+CTPCREGT W  +++ RL  G   + +
Sbjct: 313 LGTRALQIFDETTCVVRAVLRWSEFYAHESCGKCTPCREGTYWYKQMLRRLENGQGTEED 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ++ L ++S NI GR+ CALGD A  P+   IK FR      I +   C F 
Sbjct: 373 LETLLDLSDNILGRSFCALGDGATSPVTSSIKLFRDEYIAHITEGG-CPFD 422


>gi|218767064|ref|YP_002341576.1| NADH dehydrogenase I chain F [Neisseria meningitidis Z2491]
 gi|121051072|emb|CAM07342.1| NADH dehydrogenase I chain F [Neisseria meningitidis Z2491]
 gi|319411271|emb|CBY91678.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F;
           NDH-1, chain F) [Neisseria meningitidis WUE 2594]
          Length = 433

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL     +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  +   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|108760787|ref|YP_629345.1| NADH dehydrogenase I subunit F [Myxococcus xanthus DK 1622]
 gi|108464667|gb|ABF89852.1| NADH dehydrogenase I, F subunit [Myxococcus xanthus DK 1622]
          Length = 446

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 205/422 (48%), Positives = 270/422 (63%), Gaps = 14/422 (3%)

Query: 13  YGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
              Q  +L     RG ++ + K L+     II+EVK S LRGRGGAGF TG+KWSF+PK 
Sbjct: 17  GKPQSWTLDSYRKRGGYEALKKALQMEPAAIIDEVKKSNLRGRGGAGFPTGLKWSFVPKD 76

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            S +P YL VN DESEPGT KDR I+  +PH ++EG  IAS+A+G H  ++Y+RGEF   
Sbjct: 77  -SPKPKYLAVNGDESEPGTFKDRYILEDDPHMMLEGIAIASYALGVHTCYVYLRGEFKFP 135

Query: 133 RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
            E  QAA+DE Y +G+ G       Y+++  +  GAGAYICGEETALLESLEGKKG PRL
Sbjct: 136 AERTQAAIDEAYKAGIFGKKVLGKDYELNCYLVRGAGAYICGEETALLESLEGKKGWPRL 195

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFPA VGL+GCPT VNNVE++A VP I ++GA  Y+  G + + GT+L  +SG VN P
Sbjct: 196 KPPFPAVVGLFGCPTVVNNVETLASVPAIFQQGAEAYAKLGTDKSGGTRLVCLSGTVNRP 255

Query: 252 CTVEESMSITFDELIEK--HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
              E SM  T  ELI    +  G+  G   + AVIPGGSS P L A ++    M+++ LK
Sbjct: 256 GVYEVSMFTTLSELIFDDKYGRGMPAGRK-VKAVIPGGSSAPVLGADEL-DVAMEFEALK 313

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
              +  G+  VIVMD +T +++++WR++ FY  ESCGQCTPCREGT W  R++ ++ +G 
Sbjct: 314 VKQTMAGSGGVIVMDDTTCMVRSLWRVARFYAEESCGQCTPCREGTPWQTRLLRKIEEGR 373

Query: 370 AQKREIDLLYEVSKNIE-------GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +  +ID+L  V+ +I        G TICALGDAAA P    +  FR   E  I + HRC
Sbjct: 374 GEPGDIDMLSNVASSIAPYPPIGLGNTICALGDAAALPTHSFLMRFRDEFEAHIRE-HRC 432

Query: 423 NF 424
            F
Sbjct: 433 PF 434


>gi|261400476|ref|ZP_05986601.1| NADH oxidoreductase, F subunit [Neisseria lactamica ATCC 23970]
 gi|269209735|gb|EEZ76190.1| NADH oxidoreductase, F subunit [Neisseria lactamica ATCC 23970]
          Length = 431

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N      + ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDLEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|187923345|ref|YP_001894987.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phytofirmans
           PsJN]
 gi|187714539|gb|ACD15763.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phytofirmans
           PsJN]
          Length = 442

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 269/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 AGDVERPGNYEIPLGTPFSTLMELAGGM--RGVKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G+ +  ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 369 IEHGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|161870818|ref|YP_001599991.1| NADH dehydrogenase I chain F [Neisseria meningitidis 053442]
 gi|161596371|gb|ABX74031.1| NADH dehydrogenase I chain F [Neisseria meningitidis 053442]
          Length = 433

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 199/406 (49%), Positives = 258/406 (63%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  + A+ +  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFETALAQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G    
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGCM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  +   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSIGNQMAGRTICALADAAVFPVRSFTKHFRDEFVYYIEH 421


>gi|126343112|ref|XP_001368340.1| PREDICTED: similar to NADH dehydrogenase [Monodelphis domestica]
          Length = 465

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 253/421 (60%), Positives = 307/421 (72%), Gaps = 16/421 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 48  LKDEDRIFTNLYGRHEWRLKGAQSRGDWYKTKEILLKGPDWILNEIKTSGLRGRGGAGFP 107

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+I   A+GA  A
Sbjct: 108 TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIGGRAMGARAA 167

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+    YD D+ V  GAGAYICGEETAL+E
Sbjct: 168 YIYIRGEFYNEASNLQVAIREAYEAGLIGRNACGSDYDFDVFVVRGAGAYICGEETALIE 227

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG SW++ FGRE N GTK
Sbjct: 228 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGSWFASFGRERNSGTK 287

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLL VIPGGSS P +P      
Sbjct: 288 LFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLGVIPGGSSTPLIPKSVCET 347

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDR--STDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            +MD+DGL +  +GLGTAAVIVMDR   T + +   R+             P   G  WM
Sbjct: 348 VLMDFDGLIQAQTGLGTAAVIVMDRSVRTPLARPAVRM-------------PLPAGVDWM 394

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +VM R VKG A+  EID  +E+SK IEG TICALGD  AWP+QGLI++FRP +E+R+ +
Sbjct: 395 NKVMWRFVKGDARVSEIDAFWEISKQIEGHTICALGDGPAWPVQGLIRHFRPELEDRMHR 454

Query: 419 Y 419
           +
Sbjct: 455 F 455


>gi|254468829|ref|ZP_05082235.1| NADH oxidoreductase (quinone), F subunit [beta proteobacterium
           KB13]
 gi|207087639|gb|EDZ64922.1| NADH oxidoreductase (quinone), F subunit [beta proteobacterium
           KB13]
          Length = 437

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/430 (46%), Positives = 273/430 (63%), Gaps = 11/430 (2%)

Query: 2   LTDQDRIFTNLYGL-----QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRG 54
           L + ++   N+           S+    S G ++ + +IL+       +I+E+K SGLRG
Sbjct: 11  LENNNKQLFNICLRTSSLKNPGSIKTYQSIGGYEQIKRILKNKIDPQQLIDEIKISGLRG 70

Query: 55  RGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114
           RGGAGF TG+KWSFMP+   D   Y+V N+DE EPGT KDRDI+R+ PH LIEG +I ++
Sbjct: 71  RGGAGFPTGVKWSFMPRDY-DGTKYIVCNSDEGEPGTFKDRDIIRYNPHQLIEGMIIGAY 129

Query: 115 AIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICG 173
            + A   F Y+ GE   +    + A+++   +G LG+N    G+D ++   HG GAYICG
Sbjct: 130 IMNAQVGFNYIHGEIWEDYVFFEKAIEDARKAGFLGNNILGSGFDFELHAVHGYGAYICG 189

Query: 174 EETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR 233
           EETAL+ES+EGKKGQPR KPPFPA  G+YG PT VNN E+ A +P I+  G   +   G 
Sbjct: 190 EETALIESIEGKKGQPRYKPPFPATYGIYGKPTNVNNTETYASIPWIIEHGGQEFMSHGV 249

Query: 234 ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL 293
            N+ GTK+FS+SGHV  P   E  + + F +L+ +  G  +     L AVIPGG S P +
Sbjct: 250 PNSGGTKIFSVSGHVEKPGNYEIQLGMPFRQLLAEAGGVWKN--RQLKAVIPGGPSTPVV 307

Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353
           PA  +  A +DYDGL ++GS +G  ++IVMD ST +++A+ RLS F+  ESCGQCTPCRE
Sbjct: 308 PANIIIDATLDYDGLAQIGSSVGAGSMIVMDDSTCMVQALRRLSYFFYEESCGQCTPCRE 367

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           GTGW+ R+++R+ KG A   ++DLL +VSK I GRTICALGDAAA P+   IK+FR   E
Sbjct: 368 GTGWVYRIIDRIFKGQATLADLDLLTDVSKKISGRTICALGDAAATPVLSFIKHFRSEFE 427

Query: 414 ERIDQYHRCN 423
             I      N
Sbjct: 428 NFIKHGKSVN 437


>gi|224824818|ref|ZP_03697925.1| NADH-quinone oxidoreductase, F subunit [Lutiella nitroferrum 2002]
 gi|224603311|gb|EEG09487.1| NADH-quinone oxidoreductase, F subunit [Lutiella nitroferrum 2002]
          Length = 431

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 206/408 (50%), Positives = 260/408 (63%), Gaps = 6/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
               L   ++RG +  + KIL  +  ++ +I EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DAWRLDAYVARGGYQALRKILDSKLPQEDVIAEVKNSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+R  PH LIEG +IA +A+G    + Y+ GE   E 
Sbjct: 79  PG-DKYVVCNTDEGEPGTFKDRDILRFNPHALIEGMIIAGYAMGTKAGYNYIHGEVFAEY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  + A++E   +G LG +     +  ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEEALEEARKAGFLGQHILGTDFSFELYAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN ES A VP I+R GA  +   G+ NN GTKLFS+SGHVN P 
Sbjct: 198 PPFPASFGLYGKPTTINNTESFASVPFIIRDGAQKFLEAGKPNNGGTKLFSVSGHVNRPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F  L+E   G        L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEIPLGTPFSTLLEMAGGM--RDGKKLKAVIPGGSSAPILPAEIMMSCTMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVIVM+    +IKA+ RL+ FY  ESCGQCTPCREGTGW+ RV+ R+  G  + 
Sbjct: 316 SMLGSGAVIVMNEDVCMIKALERLAYFYHEESCGQCTPCREGTGWLYRVIHRIANGEGRP 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +++LL  V  N+ GRTICAL DAA +P++   K+FR   E  I+   
Sbjct: 376 GDLELLDSVGNNMAGRTICALADAAVFPVRSFTKHFRHEFEYAIEHGK 423


>gi|296169187|ref|ZP_06850840.1| NADH-quinone oxidoreductase subunit F [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896085|gb|EFG75752.1| NADH-quinone oxidoreductase subunit F [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 440

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 204/414 (49%), Positives = 266/414 (64%), Gaps = 8/414 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        +  + K L    D +I  VK SGLRGRGGAGFSTG KWSF+P+  + 
Sbjct: 21  ESWTLETYRRHDGYQALKKALAMAPDDVIATVKDSGLRGRGGAGFSTGTKWSFIPQGDTG 80

Query: 76  ---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
              +PHYLVVNADESEPGTCKD  +M   PH L+EG +IA++AI A  AFIYVRGE +  
Sbjct: 81  AAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVRGEVLPV 140

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQ AV E YA+G LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 141 LRRLQNAVAEAYAAGYLGRDINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRL 200

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P
Sbjct: 201 RPPFPAVAGLYGCPTVINNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLSGHVARP 260

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+   
Sbjct: 261 GQYEAPLGITLRELL-AYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAA 317

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 318 GSMLGTKALEIFDETTCVVRAVQRWTYFYKHESCGKCTPCREGTFWLDQIYERLETGKGT 377

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +ID L ++S  I G++ CALGD AA P+   IK FR      ++    C F 
Sbjct: 378 NEDIDKLLDISDTILGKSFCALGDGAASPVMSSIKYFRDEYVAHVEDGG-CPFD 430


>gi|78224540|ref|YP_386287.1| NADH dehydrogenase I subunit F [Geobacter metallireducens GS-15]
 gi|78195795|gb|ABB33562.1| NADH dehydrogenase I, F subunit [Geobacter metallireducens GS-15]
          Length = 591

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 167/426 (39%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
            +  Q RI  T    +  +SL   ++   +  ++K + E     +I+EVK +GLRGRGG 
Sbjct: 107 FVDQQMRIVMTGCGQIDPESLDAYLAEDGFKAIEKCVKEMTPAAVIDEVKKAGLRGRGGG 166

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKWSF       +  YL+ NADE +PG   DR I+  +P+ +IEG +IA++AIG 
Sbjct: 167 GFPTGMKWSFCA-ATPGKLKYLICNADEGDPGAFMDRSILEGDPYCIIEGMMIAAYAIGC 225

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    E LQ A+D C   G LG N    G+D D+I+  GAGA++CGEETA
Sbjct: 226 SKGYVYVRAEYPLAIERLQKALDVCREKGYLGHNIQGWGFDFDLIIKKGAGAFVCGEETA 285

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+  PT +NNVE+ A V  I+ +GA WY+  G +  +
Sbjct: 286 LMASIEGERGMPRPRPPFPAVKGLWAKPTNINNVETFANVRHIINKGAEWYASLGTDTTK 345

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V +   VE    +T  ++I   CGGI        AV  GG S  C+P   
Sbjct: 346 GTKIFAVTGKVKHTGLVEVPAGMTVRDVIYNVCGGIANNRK-FKAVQAGGPSGGCIPPEV 404

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD +T ++        F + ESCG+C PCR G   
Sbjct: 405 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLSFTRMESCGKCVPCRIGLKV 463

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+  G  Q  +I+ L E+   I+  ++C LG  A  PI   I+ FR   E  I 
Sbjct: 464 MLDILERITAGRGQAGDIETLLEMGSTIKKASLCGLGQTAPNPILSTIRYFREEYEAHIT 523

Query: 418 QYHRCN 423
              RC 
Sbjct: 524 D-KRCP 528


>gi|261364352|ref|ZP_05977235.1| NADH oxidoreductase, F subunit [Neisseria mucosa ATCC 25996]
 gi|288567616|gb|EFC89176.1| NADH oxidoreductase, F subunit [Neisseria mucosa ATCC 25996]
          Length = 433

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + +IL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRRILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  + A+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEVALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ A VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFASVPFIVRDGGQTFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEILKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIIHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFREEFVHYIEH 421


>gi|297538951|ref|YP_003674720.1| NADH-quinone oxidoreductase subunit F [Methylotenera sp. 301]
 gi|297258298|gb|ADI30143.1| NADH-quinone oxidoreductase, F subunit [Methylotenera sp. 301]
          Length = 447

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/423 (49%), Positives = 272/423 (64%), Gaps = 7/423 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGA 58
           L  Q  +    L      SL   +  G +  + +I+ +      II EVK SGLRGRGGA
Sbjct: 22  LKGQTLVTLRTLTEEDPASLETYIKLGGYSALKRIVTEKTKATDIITEVKTSGLRGRGGA 81

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFMP+   D   YLV N+DE EPGT KDRDI+R+ PH LIEG  IA++ +GA
Sbjct: 82  GFPTGLKWSFMPRYF-DGVKYLVCNSDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGA 140

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+ GE  ++ E  +AA+ E  A+G LG N     ++ D+   HG GAYICGEETA
Sbjct: 141 RVGYNYIHGEIWQDYEIFEAALHEAKAAGYLGENILGSNFNFDLYAVHGYGAYICGEETA 200

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGKKGQPR KPPFPA+ G++G PT VNN ES   +P IL  G   ++  G  N+ 
Sbjct: 201 LIESIEGKKGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWILEHGGQAFADLGVPNSG 260

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLFS+SGHV  P   E  M + F+EL+E   G  +G    L AVIPGG S P +PA  
Sbjct: 261 GTKLFSVSGHVEKPGNYEVKMGMPFNELLELAGGVWKG--RKLKAVIPGGPSTPVMPAEA 318

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A MDY+GL +  S LG  ++IVMD +T ++KA+ RLS F+  ESCGQCTPCREGTGW
Sbjct: 319 IMAATMDYEGLSKARSSLGAGSMIVMDETTCMVKALHRLSYFFYEESCGQCTPCREGTGW 378

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + RV++R+V G  +  ++DLL +VS NI GRTICALG+AAA P+   IK+FRP  E  I 
Sbjct: 379 VYRVIDRIVNGKGKMEDLDLLTDVSNNIAGRTICALGEAAATPVLSFIKHFRPEFEYYIQ 438

Query: 418 QYH 420
              
Sbjct: 439 HGK 441


>gi|195576920|ref|XP_002078321.1| GD22602 [Drosophila simulans]
 gi|194190330|gb|EDX03906.1| GD22602 [Drosophila simulans]
          Length = 499

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 255/456 (55%), Positives = 310/456 (67%), Gaps = 46/456 (10%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP    +          +DR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKAWHL----------QDREIMRHDPHKLVEGCLIARRAMGAQAA 159

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLG------------------------------- 150
           +IY+RGEF  E  +L++ +     +  L                                
Sbjct: 160 YIYIRGEFYNEEPALRSEISAHPPAVRLSDADAPWAQLPTLIVRVSTSFQHATGHAEPPS 219

Query: 151 -----SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     GYD D+ +H GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA+VG++GCP
Sbjct: 220 WSDWKKACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGCP 279

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           TTV NVE++AV PTI RRG  W++ FGR  N GTKLF+ISGHVN PCTVEE MSI   EL
Sbjct: 280 TTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRPCTVEEEMSIPLKEL 339

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           IE+HCGG+ GGWDNLL VIPGGSS P +P       IMD+DGL    + LGTAA+IVMD+
Sbjct: 340 IERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDVIMDFDGLIAAQTSLGTAAIIVMDK 399

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           STD+IKAI RL  FYKHESCGQCTPCREG GWM ++M R VKG AQ  EID+L+E+SK I
Sbjct: 400 STDVIKAIARLISFYKHESCGQCTPCREGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQI 459

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           EG TICALGD AAWP+QGLI++FRP IE+R+  + +
Sbjct: 460 EGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHAK 495


>gi|301060589|ref|ZP_07201424.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
 gi|300445292|gb|EFK09222.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
          Length = 584

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 148/425 (34%), Positives = 231/425 (54%), Gaps = 5/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q R+   N   +  +SL D ++   +  +   L    + +IN +K +GLRGRGGAG
Sbjct: 100 FFASQTRVVLANCGEIDPESLDDYLAHKGYIALQNALAMSPEDVINTMKTAGLRGRGGAG 159

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TGMKW F  +   D   Y+V NADE +PG   DR ++  +PH +IEG +IA +AIGA 
Sbjct: 160 FPTGMKWDFCRQAEGD-QKYIVCNADEGDPGAFMDRSVLEGDPHAVIEGMIIAGYAIGAT 218

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+    + L  A+ +    G LG N     +   + +  GAGA++CGEETAL
Sbjct: 219 EGYIYCRAEYPIAIKRLTKAIAQTEERGYLGKNIQGSDHSFHLTIKQGAGAFVCGEETAL 278

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L S+EG++G P+++PPFPA  GL+G PTT+NNVE++A V  +  +GA W++  G E ++G
Sbjct: 279 LASIEGRRGMPKIRPPFPAQKGLWGKPTTINNVETLANVRHVFEKGADWFASIGTEKSKG 338

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +     VE  M +T  +L+    GG+         +  GG S  CLP   +
Sbjct: 339 TKVFALAGKIKNTGLVEVPMGMTIRDLVFGPGGGMLRKKAKFKGIQLGGPSGGCLPES-L 397

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ + + G+ +G+  ++VMD  T ++        F  +ESCG+C PCR G    
Sbjct: 398 LDTPIDYESINKTGAIMGSGGMVVMDTRTCMVDVARFFLDFTVNESCGKCVPCRVGLKRT 457

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + V++ +  G   +  +  L E+   I+   +C LG+ A  P+   ++ F    E  I  
Sbjct: 458 LEVLDEITAGRGTEEHLTFLQEMGITIKNTALCGLGNTAPNPVLTTMRYFPQEYEAHIRD 517

Query: 419 YHRCN 423
            H C 
Sbjct: 518 -HVCP 521


>gi|325135049|gb|EGC57677.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M13399]
 gi|325145239|gb|EGC67518.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M01-240013]
 gi|325145310|gb|EGC67588.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M01-240013]
 gi|325205331|gb|ADZ00784.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M04-240196]
          Length = 433

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL     +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|187477546|ref|YP_785570.1| NADH dehydrogenase I subunit F [Bordetella avium 197N]
 gi|115422132|emb|CAJ48656.1| NADH dehydrogenase I chain F [Bordetella avium 197N]
          Length = 455

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 210/418 (50%), Positives = 267/418 (63%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L++ + RG ++ + KIL      + +I EVKASGLRGRGGAGF TG+K
Sbjct: 37  ILEGLDG-DNWRLAEYVKRGGYEALRKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLK 95

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    + Y+
Sbjct: 96  WSFMPRAFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYI 154

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     E  + A++E  A+G LG       ++  +   HG GAYICGEETALLESLEG
Sbjct: 155 HGEIFEVYERFEEALEEARAAGFLGDKLLGSDFNFQLHAFHGYGAYICGEETALLESLEG 214

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FSI
Sbjct: 215 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEVGKPNNGGTKIFSI 274

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V  P   E  M   F +L+E   G    G   L AVIPGGSS P LPA  +    MD
Sbjct: 275 TGDVERPGNYEIPMGTPFSKLLELAGGM--RGGKKLKAVIPGGSSAPVLPADIIMECTMD 332

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 333 YDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHR 392

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +  G  +  ++D+L  V+ NI GRTICALGDAAA P++  IK+FR      I ++  C
Sbjct: 393 IETGQGRAEDLDMLDTVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHI-EHKSC 449


>gi|124514282|gb|EAY55796.1| NADH dehydrogenase, subunit F [Leptospirillum rubarum]
          Length = 1048

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 149/425 (35%), Positives = 236/425 (55%), Gaps = 8/425 (1%)

Query: 2   LTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59
              Q +I       +   S+ D +  G ++ +  ++  +  D +I+ +  SGLRGRGGAG
Sbjct: 116 FRKQVKIVSKRCGVIDPSSIDDYLKTGGYNALKAVIAGETPDSVIDTLIRSGLRGRGGAG 175

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-A 118
           F TGMKW F  +   D   Y+V NADE +PG   DR ++  +PH++IEG +I +FAIG A
Sbjct: 176 FPTGMKWKFTRQAQGD-VKYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMIIGAFAIGNA 234

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+      L+ A+ +    G LG           + +  GAGAY+CGEETA
Sbjct: 235 RQGYIYCRAEYPHAIRLLKKAIAQAMERGYLGERILGSDLSFHLEIKEGAGAYVCGEETA 294

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ G +G P  KPPFPA  G++  PT +NNVE++A +P I+  GA W++ +G E  +
Sbjct: 295 LLASIMGDRGMPWPKPPFPAQKGIWNNPTLINNVETLANIPHIILGGAEWFASYGTEKTK 354

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G +     +E +   T  E++ +  GG+  G     A   GG S  C+P   
Sbjct: 355 GTKTFALTGKIKRTGLIEVAAGTTLKEIVYEIAGGM-SGHKKFKAAQLGGPSGGCIPVD- 412

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D++ L   G+ +G+  +IV+D +  I+        F K ESCG+CTPCR+GT  
Sbjct: 413 LIDTPIDFESLISAGAIMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKV 472

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++R+  G  + +++D L  +S  ++  ++C LG AA  P+   I+ FR   E+ I 
Sbjct: 473 MLDMIQRISDGRGEMKDLDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIK 532

Query: 418 QYHRC 422
           +  +C
Sbjct: 533 R-KKC 536


>gi|270308048|ref|YP_003330106.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS]
 gi|270153940|gb|ACZ61778.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS]
          Length = 626

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R +F N   +   S+ D ++ G + ++ K +     + I++E+  SGLRGRGG 
Sbjct: 139 FYKKQMRLVFGNNGNIDPTSIEDYLAVGGYKSLAKAISGLKPEEIVDEIIKSGLRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +   D   Y++ N DE +PG   DR +M   PH++IEG +I ++AIG+
Sbjct: 199 GFPTGWKWKSC-RDAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGS 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H A+IY+R E+         A+ +    GLLG N    G+++ I ++ G GA++CGE TA
Sbjct: 258 HEAYIYIRDEYPMAVRHALLAIKQAEDYGLLGGNILGSGFNLKIHINRGGGAFVCGESTA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEGK G+PR K    +  GLY  PTT+NNVE+ A +P I+ +GA W++  G   ++
Sbjct: 318 LMASLEGKVGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIMEKGADWFNKIGTAGSK 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G VN    +E  M IT  E++    GGI  G     A+  GG S  CLP   
Sbjct: 378 GTKIFSLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPES- 435

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +D+D L + GS +G+ A+IVMD    +++       F + ESCG+C PCREG   
Sbjct: 436 MLDLPVDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKR 495

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M +++E++ KG  ++ +I+LL ++S+ I+  ++CALG +A  P+   IK FR   E  I 
Sbjct: 496 MRQILEKITKGEGEEGDIELLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIR 555

Query: 418 QYHRCN 423
           Q   C 
Sbjct: 556 Q-KTCP 560


>gi|147669306|ref|YP_001214124.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|146270254|gb|ABQ17246.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
          Length = 623

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 242/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R +F N   +   S+ D ++ G + ++ K +     D I+ E+  SGLRGRGG 
Sbjct: 136 FYKKQMRLVFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGG 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +   D   Y++ N DE +PG   DR +M   PH++IEG +I ++AIG+
Sbjct: 196 GFPTGWKWKSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGS 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H A+IY+R E+    +    A+ +    GLLG N    G+ + I ++ G GA++CGE TA
Sbjct: 255 HEAYIYIRDEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEGK G+PR K    +  GLY  PTT+NNVE+ A +P I+ +GA W++  G   ++
Sbjct: 315 LMASLEGKVGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSK 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G VN    +E  M IT  E++    GGI  G     A+  GG S  CLP   
Sbjct: 375 GTKIFSLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPES- 432

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +D+D L + GS +G+ A+IVMD    +++       F + ESCG+C PCREG   
Sbjct: 433 MLDLPVDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M +++E++ KG  ++ +I+ L ++S+ I+  ++CALG +A  P+   IK FR   E  I 
Sbjct: 493 MRQILEKITKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIR 552

Query: 418 QYHRCN 423
           Q   C 
Sbjct: 553 Q-KTCP 557


>gi|323525441|ref|YP_004227594.1| NADH-quinone oxidoreductase subunit F [Burkholderia sp. CCGE1001]
 gi|323382443|gb|ADX54534.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1001]
          Length = 442

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 206/416 (49%), Positives = 269/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSI
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSI 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGRKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G+ +  ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 369 IEHGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|218244989|ref|YP_002370360.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801]
 gi|218165467|gb|ACK64204.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8801]
          Length = 535

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 149/420 (35%), Positives = 246/420 (58%), Gaps = 6/420 (1%)

Query: 1   MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q   +  N   +  +S+ + +SRG +  + ++L E   + +I EV  SGLRGRGG 
Sbjct: 117 FFARQFPIVLENSGQIDPESIEEYISRGGYQQLHQVLLEMTPNKVIEEVTKSGLRGRGGG 176

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+ + +  Y++ NADE +PG   DR I+  +PH ++EG  IA +A+GA
Sbjct: 177 GYPTGVKWATVAKMPT-QQKYVICNADEGDPGAFMDRAILESDPHRVLEGMAIAGYAVGA 235

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IY+R E+    + L+ A+ +    GL+G       +D  I +  GAGA++CGEETA
Sbjct: 236 NHGYIYIRAEYPLAIQRLEKAIQQAKKYGLMGVQIFDSPFDFKIDIRVGAGAFVCGEETA 295

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A +  I+R G +WY+  G E ++
Sbjct: 296 LMASVEGKRGTPHPRPPYPAESGLWGHPTLINNVETYANIVPIIREGGAWYASIGTEKSK 355

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     +E  M  T  E++E+  GG+    + + AV  GG S  C+P   
Sbjct: 356 GTKVFALTGKVKNIGLIEVPMGTTIREIVEEIGGGV-SDGEKVKAVQTGGPSGGCIP-EH 413

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    ++YD L+++G+ +G+  +IVMD ST +++       F + ESCG+C PCR GT  
Sbjct: 414 LFDTPVEYDSLQKLGTIMGSGGMIVMDESTSMVEISRFYMEFCREESCGKCVPCRTGTVQ 473

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ +LV+G A  R++  L  + + ++  ++C LG  A  P+   +  FR      I 
Sbjct: 474 LYNLLTKLVEGQANNRDLAQLEALCQMVKETSLCGLGMTAPNPVLSTLHYFRDEYLALIQ 533


>gi|118498236|ref|YP_899286.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           novicida U112]
 gi|118424142|gb|ABK90532.1| NADH dehydrogenase I, F subunit [Francisella novicida U112]
          Length = 424

 Score =  485 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 210/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G   L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQKVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T +++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR      I+   R
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419


>gi|238023164|ref|ZP_04603590.1| hypothetical protein GCWU000324_03090 [Kingella oralis ATCC 51147]
 gi|237865547|gb|EEP66687.1| hypothetical protein GCWU000324_03090 [Kingella oralis ATCC 51147]
          Length = 431

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 203/418 (48%), Positives = 260/418 (62%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQG--KSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTG 63
           IF ++        +L + + RG +  + KI+ +   +D IINE+K S LRGRGGAGF TG
Sbjct: 9   IFKDVNTQDPSCWTLDEYIKRGGYQALRKIISEKTPQDDIINELKTSNLRGRGGAGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSFMP+       Y+V N DE EPGT KDRDI+   PH LIEG +I  + +GA   + 
Sbjct: 69  LKWSFMPRAFEG-QKYVVCNTDEGEPGTFKDRDIILFNPHALIEGMIIGGYTMGASAGYN 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+ GE     +  +AA+ +   + LLG N     +  ++  HHG GAY+CGEETALLESL
Sbjct: 128 YIHGEIFEGYQRFEAALAQAREANLLGQNILGSDFSFELFAHHGYGAYVCGEETALLESL 187

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGKKGQPR KPPFPA+ GLYG PTT+NN E+ + VP ILR G   ++  G E   GTKLF
Sbjct: 188 EGKKGQPRFKPPFPASFGLYGKPTTINNTETFSSVPFILRDGGQTFADIGIEKAGGTKLF 247

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           SISGHV  P   E  +   F EL+    G    G   L AVIPGGSS P LPA  +    
Sbjct: 248 SISGHVERPGNYEIPLGTPFAELLAMAGG--VRGGKKLKAVIPGGSSAPVLPADIIMQIN 305

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MDYD + + GS LG+ AVIVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++
Sbjct: 306 MDYDSIAKAGSMLGSGAVIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRIV 365

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            R+  G  +  ++DLL  V  N+ GRTICAL DAA +P++G  K+FR      I+   
Sbjct: 366 HRIANGKGRMEDLDLLDSVGNNMAGRTICALADAAVFPVRGFTKHFREEFVHYIEHGK 423


>gi|227499381|ref|ZP_03929492.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
 gi|227218585|gb|EEI83825.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
          Length = 526

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 151/426 (35%), Positives = 234/426 (54%), Gaps = 6/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R +  N   +   S+ D +    +  + K + E  +  II+ VK SGLRGRGGA
Sbjct: 40  FYENQKRLVLKNCGIIDPSSIEDYIGLDGYKALYKAIYELDQREIIDIVKDSGLRGRGGA 99

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW    +  S    Y++ NADE +PG   DR ++  +PH+++E   I +FAIGA
Sbjct: 100 GFPVGRKWEAAYREDSPI-KYIICNADEGDPGAFMDRSVLELDPHSVLEAMAIGAFAIGA 158

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  FIYVR E+ +  ++L+ A+ +  A  LLG N     +  DI +  GAGA++CGE TA
Sbjct: 159 NKGFIYVRAEYPKAVKALEKAIKDAKAYNLLGENILDSDFSFDIELRLGAGAFVCGEGTA 218

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G PR K       GL+G PT +NNVES+A +  I+ +G +W+  FG E + 
Sbjct: 219 LMESIEGKRGMPRNKEYRTTVKGLWGKPTVINNVESLANIGQIINKGPAWFRTFGTEKSP 278

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++SG V     VE +M  + + ++     GI+   +   AV  GG S  C+P  +
Sbjct: 279 GTKVFALSGKVKRAGLVEVAMGTSINTIVYDIGKGIQADKEA-KAVQTGGPSGGCIPK-R 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +     D++ LK +GS +G+  ++VMD    ++        F   ESCG+CTPCR G   
Sbjct: 337 LFDTACDFESLKAIGSIMGSGGMVVMDEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKR 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++ L KG A +  +D L E++  +   ++C LG ++  PI   +K F    E  I 
Sbjct: 397 LFEMLDDLTKGKADQESLDKLDELAHIVAETSLCGLGKSSPNPIISTMKYFYDEYEAHIG 456

Query: 418 QYHRCN 423
           +   C 
Sbjct: 457 KTKTCP 462


>gi|289432572|ref|YP_003462445.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|288946292|gb|ADC73989.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 623

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 242/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R +F N   +   S+ D ++ G + ++ K +     D I+ E+  SGLRGRGG 
Sbjct: 136 FYKKQMRLVFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGG 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +   D   Y++ N DE +PG   DR +M   PH++IEG +I ++AIG+
Sbjct: 196 GFPTGWKWKSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGS 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H A+IY+R E+    +    A+ +    GLLG N    G+ + I ++ G GA++CGE TA
Sbjct: 255 HEAYIYIRDEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEGK G+PR K    +  GLY  PTT+NNVE+ A +P I+ +GA W++  G   ++
Sbjct: 315 LMASLEGKVGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSK 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G VN    +E  M IT  E++    GGI  G     A+  GG S  CLP   
Sbjct: 375 GTKIFSLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPES- 432

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +D+D L + GS +G+ A+IVMD    +++       F + ESCG+C PCREG   
Sbjct: 433 MLDLPVDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M +++E++ KG  ++ +I+ L ++S+ I+  ++CALG +A  P+   IK FR   E  I 
Sbjct: 493 MRQILEKITKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIR 552

Query: 418 QYHRCN 423
           Q   C 
Sbjct: 553 Q-KTCP 557


>gi|73748525|ref|YP_307764.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1]
 gi|73660241|emb|CAI82848.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1]
          Length = 623

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 242/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R +F N   +   S+ D ++ G + ++ K +     D I+ E+  SGLRGRGG 
Sbjct: 136 FYKKQMRLVFGNNGNIDPTSIEDYLAVGGYKSLAKAISSLKPDEIVEEIIKSGLRGRGGG 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +   D   Y++ N DE +PG   DR +M   PH++IEG +I ++AIG+
Sbjct: 196 GFPTGWKWKSC-REAHDPVKYVICNCDEGDPGAFMDRSLMEGNPHSVIEGMIIGAYAIGS 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H A+IY+R E+    +    A+ +    GLLG N    G+ + I ++ G GA++CGE TA
Sbjct: 255 HEAYIYIRDEYPMAVKHALLAIKQAEDYGLLGENILGSGFSLKIHINRGGGAFVCGESTA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEGK G+PR K    +  GLY  PTT+NNVE+ A +P I+ +GA W++  G   ++
Sbjct: 315 LMASLEGKVGEPRAKYVHTSEKGLYDKPTTLNNVETWANIPLIIEKGADWFNKIGTAGSK 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G VN    +E  M IT  E++    GGI  G     A+  GG S  CLP   
Sbjct: 375 GTKIFSLVGKVNNTGLIEVPMGITLREIVYDIGGGIPKG-KKFKAIQTGGPSGGCLPES- 432

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +D+D L + GS +G+ A+IVMD    +++       F + ESCG+C PCREG   
Sbjct: 433 MLDLPVDFDELTKAGSMMGSGAMIVMDEDNCMVEIARYFLSFLEGESCGKCVPCREGVKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M +++E++ KG  ++ +I+ L ++S+ I+  ++CALG +A  P+   IK FR   E  I 
Sbjct: 493 MRQILEKITKGEGEEGDIEHLEQLSQAIQDASLCALGGSAPNPVMSTIKYFREEYEAHIR 552

Query: 418 QYHRCN 423
           Q   C 
Sbjct: 553 Q-KTCP 557


>gi|326473915|gb|EGD97924.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326480914|gb|EGE04924.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton equinum
           CBS 127.97]
          Length = 511

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 253/423 (59%), Positives = 307/423 (72%), Gaps = 22/423 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DW                 F 
Sbjct: 85  LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWS----------------FM 128

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
               W    K     P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++  A+ A  A
Sbjct: 129 NFKDWDKDTK-----PRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNATAA 183

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETAL+E
Sbjct: 184 YIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETALIE 243

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++GFGRE N+GTK
Sbjct: 244 SIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQGTK 303

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP      
Sbjct: 304 LFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHICDD 363

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W ++
Sbjct: 364 QMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKWTLQ 423

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Q  
Sbjct: 424 MMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIRQNA 483

Query: 421 RCN 423
           + N
Sbjct: 484 QAN 486


>gi|121634118|ref|YP_974363.1| NADH dehydrogenase I chain F [Neisseria meningitidis FAM18]
 gi|120865824|emb|CAM09556.1| NADH dehydrogenase I chain F [Neisseria meningitidis FAM18]
 gi|325137073|gb|EGC59669.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M0579]
 gi|325139137|gb|EGC61683.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           ES14902]
 gi|325143087|gb|EGC65434.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           961-5945]
 gi|325143157|gb|EGC65503.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           961-5945]
 gi|325197532|gb|ADY92988.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           G2136]
 gi|325202925|gb|ADY98379.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M01-240149]
 gi|325207277|gb|ADZ02729.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 433

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 200/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + V  I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|239929609|ref|ZP_04686562.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
 gi|291437933|ref|ZP_06577323.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
 gi|291340828|gb|EFE67784.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
          Length = 448

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 204/425 (48%), Positives = 264/425 (62%), Gaps = 15/425 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
             D+DR           +L      G ++ + K L    D +I  VK SGLRGRGGAGF 
Sbjct: 23  FWDEDR---------SWTLDVYRRHGGYEGLRKALAMSPDDVIAYVKDSGLRGRGGAGFP 73

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW F+P+    +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  A
Sbjct: 74  TGMKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHA 132

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+RGE +     L AAV E YA+GLLG N    G D+++ VH GAGAYICGEETALL+
Sbjct: 133 FIYLRGEVVPVLRRLHAAVREAYAAGLLGENVLGSGLDLELTVHAGAGAYICGEETALLD 192

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++GQPRL+PPFPA  GLY CPT VNNVESIA VP+IL RG  W+   G E + G  
Sbjct: 193 SLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPSILHRGKEWFRSMGSEKSPGFT 252

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGHV  P   E  + IT  +L+E   G        L    PGGSS P      +  
Sbjct: 253 LYSLSGHVANPGQYEAPLGITLRQLLEMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-D 309

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+G+   GS LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++
Sbjct: 310 VPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQ 369

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++  +  G  +  ++D L +++ NI G++ CALGD AA PI   +K FR   E+ I    
Sbjct: 370 LLRDIEAGKGRMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGRG 429

Query: 421 RCNFQ 425
            C F 
Sbjct: 430 -CPFD 433


>gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH
           [Geobacter metallireducens GS-15]
          Length = 635

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 242/426 (56%), Gaps = 8/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R I +    L  KS+ D ++ G +  + K+L +   + ++ E+K S LRGRGG 
Sbjct: 131 FYKNQQRNILSENLRLDSKSMDDYLAIGGYSALSKVLFQMTPEDVMGEIKKSNLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF    KW    +   D   Y++VNADE +PG   DR ++   PH+++EG +I ++A+GA
Sbjct: 191 GFPAWRKWE-ESRNAPDPIKYVIVNADEGDPGAFMDRALIEGNPHSILEGLIIGAYAVGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  FIYVR E+    E++  A+ +    G +G +    G+D  + VH GAGA++CGE +A
Sbjct: 250 HEGFIYVRQEYPLAVENINLAIRQASERGFVGKDILGSGFDFTVKVHMGAGAFVCGESSA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ +LEG+ G+PR K    A  G++  P+ +NNVE+ A V  I+ +GA W++ +G   + 
Sbjct: 310 LMTALEGRAGEPRPKYIHTAVKGVWDHPSVLNNVETWANVTQIITKGADWFTSYGTAGST 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G +     VE  M +T  ++I K  GGI  G     AV  GG S  C+P   
Sbjct: 370 GTKIFSLVGKITNTGLVEVPMGVTLRDIITKVGGGIP-GGKKFKAVQTGGPSGGCIPEA- 427

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +D+D L + GS +G+  +IVMD  T ++        F K ESCG+CTPCREG   
Sbjct: 428 MLDLPVDFDELTKAGSMMGSGGMIVMDEDTCMVDIARYFIDFLKDESCGKCTPCREGIRQ 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ V+ R+  G  ++ +I+LL E++++  G  +CALG +A  P+   I+ FR   E  I 
Sbjct: 488 MLAVLTRITVGKGKEGDIELLEELAES-TGAALCALGKSAPNPVLSTIRYFRDEYEAHIR 546

Query: 418 QYHRCN 423
           +  +C 
Sbjct: 547 E-KKCP 551


>gi|292493663|ref|YP_003529102.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus
           Nc4]
 gi|291582258|gb|ADE16715.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus
           Nc4]
          Length = 427

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 218/425 (51%), Positives = 276/425 (64%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGA 58
           M+      F  L       L + +    +    +IL++      II EVKASGLRGRGGA
Sbjct: 1   MIALNQVCFRTLDLDPPWGLENYLKVKGYKVWKRILKEKTPPSKIIEEVKASGLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFMP+       Y+V N+DE EPGT KDRDIMR+ PH LIEG  IA +AIGA
Sbjct: 61  GFPTGLKWSFMPQNLPG-TKYIVCNSDEGEPGTFKDRDIMRYNPHQLIEGMAIAGYAIGA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+RGEF+   +  +AA++E Y +GLLG N    G D D+  H GAGAYICGEETA
Sbjct: 120 TAGYNYIRGEFVEPIDRFEAALEEAYEAGLLGKNILGSGIDFDLYSHPGAGAYICGEETA 179

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGKKG PR KPPFPA  GLYG PTT+NN ES+A VP IL +G  W+   G   + 
Sbjct: 180 LLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTESLASVPVILEKGGQWFLKLGTPTSG 239

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+SGHVN P   E  M   F +L+E   G      + L AVIPGG+SVP +PA  
Sbjct: 240 GTKIFSVSGHVNRPGNYEVPMGTPFKDLLELAGGM--RNGNALKAVIPGGTSVPVMPAEA 297

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A MDYD L + GS LG  +VI+MD +T +++A+ R+S FY  ESCGQCTPCREGTGW
Sbjct: 298 IMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYYEESCGQCTPCREGTGW 357

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + RV+ R+  G   + ++D L  V++NI+G TICALGDAAA P+   I++FR   +  ID
Sbjct: 358 LYRVVRRIEHGQGTQEDLDKLVNVAQNIDGHTICALGDAAAAPVISFIQHFRDEFQYHID 417

Query: 418 QYHRC 422
            + RC
Sbjct: 418 -HKRC 421


>gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 626

 Score =  485 bits (1248), Expect = e-135,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + +++ ++   ++ + ++L     D +I+E+K SGLRGRGG 
Sbjct: 140 FYKKQKRIALRNCGLINPEDITEYIAMNGYEALGRVLTQMTPDSVIDEIKKSGLRGRGGG 199

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K  SD   +++ NADE +PG   DR I+  +P++++E   IA + IGA
Sbjct: 200 GFPTGIKWEMTKKSQSD-TKFIICNADEGDPGAFMDRSILEGDPNSVLEAMAIAGYCIGA 258

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IY+R E+      L+ A+ + Y  GLLG N     +   I + +GAGA+ICGEETA
Sbjct: 259 NKGYIYIRAEYPLAINRLRIAIKQAYDLGLLGDNILGSSFSFHIDLKYGAGAFICGEETA 318

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+P +KPPFP+ +GL+  PT +NNVE++A +  I+  G+ W+S  G E ++
Sbjct: 319 LINSIEGGRGEPTVKPPFPSQIGLWKKPTNINNVETLANIAPIILNGSQWFSSIGTEKSK 378

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M IT  E+I    GGIR G     AV  GG S  C+PA  
Sbjct: 379 GTKVFALAGKINNVGLVEVPMGITLREIIYDLGGGIR-GGKKFKAVQTGGPSGGCIPADH 437

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L E+GS +G+  +IVMD    ++        F   ESCG+CT CR G   
Sbjct: 438 L-DIPIDYESLTEIGSMMGSGGMIVMDEDNCMVNIAKFYLQFSVDESCGRCTACRIGNKR 496

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++E +  G      ++ L ++S  I+  ++C LG  +  P+   +K F       + 
Sbjct: 497 LLEILENITNGKGTMEHLEGLKDLSYVIKDSSLCGLGQTSPNPVISTMKFFWDEYVSHVK 556

Query: 418 QYHRCN 423
             H C 
Sbjct: 557 DKH-CP 561


>gi|301060225|ref|ZP_07201092.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300445737|gb|EFK09635.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 651

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 152/421 (36%), Positives = 235/421 (55%), Gaps = 5/421 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           ++  +      +  + + D ++ G +  + K L+   + +I EVKASGLRGRGGAGF TG
Sbjct: 143 EKRLVMEKCGRVDPEEIDDYLAHGGYAALAKALQSSPEMVIEEVKASGLRGRGGAGFPTG 202

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKW    K        ++ NADE +PG   DR I+   PH ++EG +I + AIGA  A +
Sbjct: 203 MKWELAAKA-GRVEKTVICNADEGDPGAYMDRTILESNPHQVLEGIIICARAIGAQKAVV 261

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+    + +  A+       LLG       + +DI V  G+GA++CGEETAL++S+
Sbjct: 262 YVRAEYPLAVKMVTRAIARAKEMRLLGDRILGSPFSLDIEVFQGSGAFVCGEETALIQSI 321

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++G P  +PPFP   GL+G PT +NNV++ A VP ++  GA  +   G E + GT +F
Sbjct: 322 EGRRGMPTYRPPFPVQKGLWGQPTVINNVKTFATVPFVVAHGALQFREVGTEKSPGTAIF 381

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+ G+V +   VE  M +    L+   CGGI        AV  GG S  CLPA  +    
Sbjct: 382 SVVGNVRHAGLVEIPMGVDLRTLVFDTCGGIP-NKKAFKAVQIGGPSGGCLPAEFL-DTP 439

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+D L E G+ +G+  ++VMD  T ++        F + ESCG+CT CR GT  ++ ++
Sbjct: 440 IDFDSLTEAGAMMGSGGMVVMDEDTCMVDVARYFLDFTQKESCGKCTFCRVGTHHLLEIL 499

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+ KG  ++ ++++L  +S++I+  ++C LG  A  P+   +K FR   E  I +  RC
Sbjct: 500 VRITKGEGREGDLEILESLSEDIKAGSLCGLGKTAPNPVLTSLKYFRDEYEAHIKE-KRC 558

Query: 423 N 423
            
Sbjct: 559 P 559


>gi|170696394|ref|ZP_02887523.1| NADH-quinone oxidoreductase, F subunit [Burkholderia graminis
           C4D1M]
 gi|170138722|gb|EDT06921.1| NADH-quinone oxidoreductase, F subunit [Burkholderia graminis
           C4D1M]
          Length = 442

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 208/416 (50%), Positives = 272/416 (65%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSI
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSI 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+    GG+RGG   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLM-DLAGGMRGGRK-IKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G+ +  ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 369 IEHGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|311104663|ref|YP_003977516.1| NADH oxidoreductase (quinone) subunit F [Achromobacter xylosoxidans
           A8]
 gi|310759352|gb|ADP14801.1| NADH oxidoreductase (quinone), F subunit [Achromobacter
           xylosoxidans A8]
          Length = 455

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 212/421 (50%), Positives = 268/421 (63%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFST 62
           Q +I  ++ G     L+D + RG ++ + KIL      + +I EVKASGLRGRGGAGF T
Sbjct: 34  QPQIMADVDGAN-WRLADYVKRGGYEALKKILTTGMKPEDVIAEVKASGLRGRGGAGFPT 92

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    +
Sbjct: 93  GLKWSFMPRAFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGY 151

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE     E  + A++E  A+G LG       Y   +   HG GAYICGEETALLES
Sbjct: 152 NYIHGEIFEVYERFEEALEEARAAGFLGDKILGSDYSFQLHAFHGYGAYICGEETALLES 211

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R     Y   G+ NN GTKL
Sbjct: 212 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTKL 271

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FSI+G V  P   E  +   F  L+E   G    G   L AVIPGGSS P LPA  +   
Sbjct: 272 FSITGDVERPGNYEIPLGTPFSTLLELAGGM--RGGKKLKAVIPGGSSAPVLPADVIMEC 329

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R+
Sbjct: 330 TMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRM 389

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+  G  +  ++DLL  V+ NI GRTICALGDAAA P++G +K+FR      I ++  
Sbjct: 390 VHRIENGHGRPEDLDLLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHI-EHKS 448

Query: 422 C 422
           C
Sbjct: 449 C 449


>gi|257058013|ref|YP_003135901.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
 gi|256588179|gb|ACU99065.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 8802]
          Length = 535

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 149/420 (35%), Positives = 246/420 (58%), Gaps = 6/420 (1%)

Query: 1   MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q   +  N   +  +S+ + +SRG +  + ++L E   + +I EV  SGLRGRGG 
Sbjct: 117 FFARQFPIVLENSGQIDPESIEEYISRGGYQQLHQVLLEMTPNKVIEEVTKSGLRGRGGG 176

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+ + +  Y++ NADE +PG   DR I+  +PH ++EG  IA +A+GA
Sbjct: 177 GYPTGVKWATVAKMPT-QQKYVICNADEGDPGAFMDRAILESDPHRVLEGMAIAGYAVGA 235

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IY+R E+    + L+ A+ +    GL+G       +D  I +  GAGA++CGEETA
Sbjct: 236 NHGYIYIRAEYPLAIQRLEKAIQQAKKYGLMGVQIFDSPFDFKIDIRVGAGAFVCGEETA 295

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G P  +PP+PA  GL+G PT +NNVE+ A +  I+R G +WY+  G E ++
Sbjct: 296 LMASVEGKRGTPHPRPPYPAESGLWGHPTLINNVETYANIVPIIREGGNWYASIGTEKSK 355

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     +E  M  T  E++E+  GG+    + + AV  GG S  C+P   
Sbjct: 356 GTKVFALTGKVKNIGLIEVPMGTTIREIVEEIGGGV-SDGEKVKAVQTGGPSGGCIP-EY 413

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    ++YD L+++G+ +G+  +IVMD ST +++       F + ESCG+C PCR GT  
Sbjct: 414 LFDTPVEYDSLQKLGTIMGSGGMIVMDESTSMVEISRFYMEFCREESCGKCVPCRTGTVQ 473

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ +LV+G A  R++  L  + + ++  ++C LG  A  P+   +  FR      I 
Sbjct: 474 LYNLLTKLVEGQANNRDLAQLEALCQMVKETSLCGLGMTAPNPVLSTLHYFRDEYLALIQ 533


>gi|15679545|ref|NP_276662.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622670|gb|AAB86023.1| NADP-reducing hydrogenase, subunit C [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 630

 Score =  484 bits (1247), Expect = e-135,   Method: Composition-based stats.
 Identities = 158/425 (37%), Positives = 245/425 (57%), Gaps = 8/425 (1%)

Query: 1   MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            +  Q  RI      +  +++   ++ G +  + + LE   D +I EVK SGLRGRGGAG
Sbjct: 128 FMEGQSRRILRRCGLIDPENMGHYLATGGYRGLMRALEMEPDEVIEEVKDSGLRGRGGAG 187

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +KWS   +  S+   YL+ NADE +PG   +R ++  +PH L+EG +IAS+A+GA 
Sbjct: 188 FPTWLKWSLCRQEASE-VKYLICNADEGDPGAFMNRSLIEGDPHALLEGILIASYAVGAR 246

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY R E+    E L+ A+ +    GLLG +    G+D+DI +  GAGA++CGEETAL
Sbjct: 247 EAYIYCRAEYPLALERLRVAISDLRNLGLLGKDILGSGFDLDIKIKEGAGAFVCGEETAL 306

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR +PPFP   GL+G PT +NNVE++A V  I++ GA +++  G   +RG
Sbjct: 307 ISSIEGKRGMPRTRPPFPTTRGLWGKPTVINNVETLAAVSMIMQHGADYFNSLGTPESRG 366

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK FS+ G V     +E  +  T  E+I    GG+  G   L AV  GG S  CLPA  +
Sbjct: 367 TKTFSLVGDVRRTGLIEVPLGTTLREVIFDIGGGVVDGE--LKAVQIGGPSGGCLPAE-L 423

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L   G+ +G+  ++V+   T +++       F + ESCG+C PCR GT  M
Sbjct: 424 IDTGIDYDSLTSAGAIMGSGGLVVLSDRTCMVELARYFLEFTQRESCGKCVPCRVGTRQM 483

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++  +V+G  +  + D+L +V++++   ++C LG  +  P+   ++ F     + I  
Sbjct: 484 LMILNDIVEGSGRPEDPDILRDVAESVRAASLCGLGQTSPNPVLTTLRYFEDEYHDHIK- 542

Query: 419 YHRCN 423
             RC 
Sbjct: 543 -GRCT 546


>gi|147678983|ref|YP_001213198.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146275080|dbj|BAF60829.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 617

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 165/422 (39%), Positives = 242/422 (57%), Gaps = 6/422 (1%)

Query: 4   DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            Q R + + L     +S+ D ++ G ++ ++K L+  R  II+EVK SGLRGRGG GF T
Sbjct: 135 KQVRSVTSRLGRTNPESIEDYIATGGYEGIEKALKMDRQAIIDEVKKSGLRGRGGGGFPT 194

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW F+     D   Y V NADE +PG   DR ++  +PH ++EG +IA +AIGA   +
Sbjct: 195 GNKWQFVYNAPGD-KKYAVCNADEGDPGAFMDRSVLEGDPHAVLEGMMIAGYAIGADEGY 253

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY R E+      L  A+ +    GLLG N    G+   I +  GAGA++CGEETALL S
Sbjct: 254 IYCRAEYPLAIRRLNLAIAQAEQLGLLGDNILDSGFSFRIKIKAGAGAFVCGEETALLNS 313

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G PR++PPFPA+ GL+  PT +NNVE+ A VP I+R+G  WY+  G E ++G+K+
Sbjct: 314 IEGKRGMPRVRPPFPAHKGLWEKPTVLNNVETYANVPFIIRKGGDWYAAMGTEKSKGSKV 373

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ++G VN    +E  M IT  + +    GG   G     AV  GG S  CLP  ++   
Sbjct: 374 FCLTGKVNNTGLLEVPMGITLRD-VIFSIGGGIQGGKKFKAVQSGGPSGGCLPEEKL-DL 431

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ L   G+ +G+  ++VMD +T ++        F + ESCG+CTPCREGT  M+ +
Sbjct: 432 PVDYESLTAAGAIMGSGGLVVMDETTCMVDVARFFLNFTQAESCGKCTPCREGTKRMLEL 491

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + ++  G  +  +ID L  +++ I+   +C LG     PI   ++ FR   E  I    R
Sbjct: 492 LGKICDGRGELEDIDTLERLARVIKNSALCGLGQTCPNPILTTLRYFRHEYEAHIVD-KR 550

Query: 422 CN 423
           C 
Sbjct: 551 CP 552


>gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 613

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 161/422 (38%), Positives = 245/422 (58%), Gaps = 6/422 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
             Q  + +N   +  +S+   +S+G +  V  +L +     +I+EVK SGLRGRGG GF 
Sbjct: 131 KQQKLVLSNCGEINPESIEAYISKGGYQAVGNVLTKMKPQEVIDEVKNSGLRGRGGGGFL 190

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    +       Y++ NADE +PG   D  I+  +PH +IEG +IA+++IG+   
Sbjct: 191 TGLKWQL-ARDSIGVKKYVICNADEGDPGAFMDESILVGDPHKVIEGMIIAAYSIGSDQG 249

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+    + L+ A+D+    G LG       +  +I +  GAGA++CGEETAL+ 
Sbjct: 250 YIYVRAEYPLAIKRLEKAIDQAKQYGFLGKEMFGEVFSFNIEIKVGAGAFVCGEETALIA 309

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G PR KPPFPA  GL+G PT +NNVE+ A +P I+ RGA ++   G + ++GTK
Sbjct: 310 SIEGKRGMPRSKPPFPAEEGLWGKPTNINNVETYANIPIIINRGAEFFRSIGTKGSKGTK 369

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS++G +     VE  M I+  E+I    GG+        AV  GG S  CL   ++  
Sbjct: 370 VFSLTGKIENTGLVEVPMGISMKEIIYDIGGGVPNNRK-FKAVQIGGPSGGCLTEEKL-D 427

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DYD L ++G+ +G+  ++VMD    ++        F   ESCG+CTPC EGT  M+ 
Sbjct: 428 LPVDYDSLLQVGAIMGSGGLVVMDEDNCMVDMARFFLNFTVEESCGKCTPCSEGTRRMLE 487

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++E++V G A+  ++D L  ++K I+   +C LG AA  PI   +K FR   EE I +Y 
Sbjct: 488 ILEKIVNGRAKIEDLDQLENLAKTIKDTALCGLGQAAPNPILSTLKYFRHEYEEHI-KYK 546

Query: 421 RC 422
           +C
Sbjct: 547 KC 548


>gi|254375044|ref|ZP_04990524.1| NADH dehydrogenase I subunit F [Francisella novicida GA99-3548]
 gi|151572762|gb|EDN38416.1| NADH dehydrogenase I subunit F [Francisella novicida GA99-3548]
          Length = 424

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 210/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G   L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T +++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR      I+   R
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419


>gi|307297602|ref|ZP_07577408.1| NADH dehydrogenase (quinone) [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916862|gb|EFN47244.1| NADH dehydrogenase (quinone) [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 540

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 163/411 (39%), Positives = 246/411 (59%), Gaps = 4/411 (0%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N   +  ++L + ++   +  + K L    + +I E+K S LRGRGGAGF TG+KW 
Sbjct: 114 VLRNAGSIDPRNLEEYIALDGYQGLAKALRMTPEEVIEELKKSNLRGRGGAGFPTGLKWE 173

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F  KV SD   +++ NADE EPGT KDR IM  +PH++IEG VIA +A+GA   +IY+RG
Sbjct: 174 FTQKVRSD-EKFVICNADEGEPGTFKDRLIMEGDPHSVIEGMVIAGYAVGASKGYIYIRG 232

Query: 128 EFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+     SL+ A+ + Y  GLLG S     +  D+ V  GAGAY+CGEETAL+ES+EGK 
Sbjct: 233 EYFESVSSLRDAISKAYEYGLLGQSVLGTEFSFDLSVRLGAGAYVCGEETALIESIEGKS 292

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PRLKPP+P   GLYG PT VNNVE+ A VP I+ +GA W+   G +++ GTK+FS+ G
Sbjct: 293 GRPRLKPPYPPVSGLYGKPTVVNNVETFACVPPIIDKGAGWFRSIGTQSSPGTKVFSLCG 352

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            +     VE  M  +  +L+ K  GGI  G   L  V  GG++   +   +M  A +D+D
Sbjct: 353 DLVKRGIVEVPMGTSVRDLVHKFGGGIPKG-RTLKMVQTGGAAGTFIKPEEM-DAELDFD 410

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
             K+ G+ LG+  ++ +D +   +     L  F+ HESCG+C+PCREGT  ++ +++   
Sbjct: 411 SFKKSGASLGSGVILAIDETHCAVDIAKNLMEFFAHESCGKCSPCREGTRVIVYILDEFS 470

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           KG       + LY++S+ +E  + C LG +   P++ ++  F+      ++
Sbjct: 471 KGRGTVEMFNQLYDISETMEESSFCGLGQSVPIPLRSILDRFKDEFLSHLN 521


>gi|206602824|gb|EDZ39305.1| NADH dehydrogenase, subunit F [Leptospirillum sp. Group II '5-way
           CG']
          Length = 1048

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 149/425 (35%), Positives = 235/425 (55%), Gaps = 8/425 (1%)

Query: 2   LTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59
              Q +I       +   S+ D +  G +  +  ++  +  D +I+ +  SGLRGRGGAG
Sbjct: 116 FRKQVKIVSKRCGVIDPSSIDDYLKTGGYSALKAVIAGETPDSVIDTLIRSGLRGRGGAG 175

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-A 118
           F TGMKW F  +   D   Y+V NADE +PG   DR ++  +PH++IEG +I +FAIG A
Sbjct: 176 FPTGMKWKFTRQAQGD-VKYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMIIGAFAIGNA 234

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+      L+ A+ +    G LG           + +  GAGAY+CGEETA
Sbjct: 235 RQGYIYCRAEYPHAIRLLKKAIAQAMERGYLGERILGSDLSFHLEIKEGAGAYVCGEETA 294

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ G +G P  KPPFPA  G++  PT +NNVE++A +P I+  GA W++ +G E  +
Sbjct: 295 LLASIMGDRGMPWPKPPFPAQKGIWNNPTLINNVETLANIPHIILGGAEWFASYGTEKTK 354

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G +     +E +   T  E++ +  GG+ G      A   GG S  C+P   
Sbjct: 355 GTKTFALTGKIKRTGLIEVAAGTTLKEIVYEIAGGMSGQ-KKFKAAQLGGPSGGCIPVD- 412

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D++ L   G+ +G+  +IV+D +  I+        F K ESCG+CTPCR+GT  
Sbjct: 413 LIDTPIDFESLISAGAIMGSGGIIVLDEANCIVDTAKYFMTFTKDESCGECTPCRDGTKV 472

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++R+  G  + +++D L  +S  ++  ++C LG AA  P+   I+ FR   E+ I 
Sbjct: 473 MLDMIQRISDGRGEMKDMDDLVNLSTYVKANSLCGLGQAAPNPVLSTIRYFRAEYEDHIK 532

Query: 418 QYHRC 422
           +  +C
Sbjct: 533 R-KKC 536


>gi|327295324|ref|XP_003232357.1| NADH-ubiquinone oxidoreductase subunit [Trichophyton rubrum CBS
           118892]
 gi|326465529|gb|EGD90982.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Trichophyton rubrum
           CBS 118892]
          Length = 511

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 253/423 (59%), Positives = 307/423 (72%), Gaps = 22/423 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF NLYG     L  +M  G W    +I+ KG DW                 F 
Sbjct: 85  LKDQDRIFQNLYGRHPPDLKHAMKCGDWYKTKEIILKGHDWS----------------FM 128

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
               W    K     P YLVVNADE EPGTCKDR+IMR +PH LIEGC+++  A+ A  A
Sbjct: 129 NFKDWDKDTK-----PRYLVVNADEGEPGTCKDREIMRKDPHKLIEGCLVSGRAMNATAA 183

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E   LQ A++E YA+GL+G N+   GYD D+ +H G GAYICGEETAL+E
Sbjct: 184 YIYIRGEFYEEATVLQKAINEAYAAGLIGKNACGSGYDFDVYIHRGMGAYICGEETALIE 243

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W++GFGRE N+GTK
Sbjct: 244 SIEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKWFAGFGRERNQGTK 303

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELI++HCGG+RGGWDNLLAVIPGGSS P LP      
Sbjct: 304 LFCISGHVNNPCTVEEEMSIPLRELIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKHICDD 363

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D LK+  SGLGTAAVIVMD+STDI++AI RLS FY+HESCGQCTPCREG+ W ++
Sbjct: 364 QMMDFDALKDSQSGLGTAAVIVMDKSTDIVRAISRLSAFYRHESCGQCTPCREGSKWTLQ 423

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +MER  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++FRP +E RI Q  
Sbjct: 424 MMERFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRHFRPELEARIRQNA 483

Query: 421 RCN 423
           + N
Sbjct: 484 QAN 486


>gi|304389071|ref|ZP_07371115.1| NADH-quinone oxidoreductase subunit F [Neisseria meningitidis ATCC
           13091]
 gi|304336944|gb|EFM03134.1| NADH-quinone oxidoreductase subunit F [Neisseria meningitidis ATCC
           13091]
          Length = 433

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 200/406 (49%), Positives = 259/406 (63%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++  +  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFKLFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + V  I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|222053575|ref|YP_002535937.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562864|gb|ACM18836.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 593

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 167/426 (39%), Positives = 246/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
            +  Q R+  +    +   SL   +    +  ++K ++      +I+EVK SGLRGRGG 
Sbjct: 109 FVDQQMRVVMSGCGQIDPDSLQAYLEEDGFKAIEKCIKTMKPAEVIDEVKKSGLRGRGGG 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKWSF      D   YL+ NADE +PG   DR ++  +P  +IEG ++A++AIG 
Sbjct: 169 GFPTGMKWSFCAASPGD-KKYLICNADEGDPGAFMDRSVLEGDPFCIIEGMMVAAYAIGC 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++YVR E+    + LQ A+D CY  G LG N    G+D D+ +  GAGA++CGEETA
Sbjct: 228 YYGYVYVRAEYPLAIQRLQHAIDICYEKGWLGKNIQGWGFDFDMRIKMGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V  I+ +GA WY+  G +  +
Sbjct: 288 LMASIEGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHIINKGADWYASLGTDTTK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V +   VE    ++  ++I   CGGI        AV  GG S  C+PA  
Sbjct: 348 GTKIFAVTGKVKHTGLVEVPAGMSVRQVIYDVCGGIANNRK-FKAVQAGGPSGGCIPAEV 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD +T ++        F + ESCG+C PCR G   
Sbjct: 407 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLSFTRMESCGKCVPCRIGLKA 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ V+ER+ +G  Q  +ID L E+   I+  ++C LG  A  PI   IK FR   E  I+
Sbjct: 466 MLDVLERITEGRGQASDIDTLLEMGATIKKASLCGLGQTAPNPILSTIKYFRHEYEAHIN 525

Query: 418 QYHRCN 423
              RC 
Sbjct: 526 D-KRCP 530


>gi|39995452|ref|NP_951403.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA]
 gi|39982215|gb|AAR33676.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA]
 gi|298504451|gb|ADI83174.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400]
          Length = 591

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 168/426 (39%), Positives = 247/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
            +  Q R+  T    +  +SL   +    +  ++K + E     +I+EVK SGLRGRGG 
Sbjct: 107 FVDQQMRVVMTGCGQIDPESLDAYLEEDGFKAIEKCVKEMTPAAVIDEVKKSGLRGRGGG 166

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKWSF       +  Y++ NADE +PG   DR I+  +P+ +IEG +IA++AIG 
Sbjct: 167 GFPTGMKWSFCA-ATPGKLKYVICNADEGDPGAFMDRSILEGDPYCIIEGMMIAAYAIGC 225

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    E LQ A+D CY  G LG N    G+D D+ +  GAGA++CGEETA
Sbjct: 226 TAGYVYVRAEYPLAIERLQKALDVCYEKGYLGKNVMGWGFDFDLRIKKGAGAFVCGEETA 285

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V  I+ +GA WY+  G +  +
Sbjct: 286 LMASIEGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHIILKGADWYASLGTDTTK 345

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V +   VE    ++  E+I   CGGI        AV  GG S  C+P+  
Sbjct: 346 GTKIFAVTGKVKHTGLVEVPAGMSVREVIYNVCGGIANNRK-FKAVQAGGPSGGCIPSEV 404

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD +T ++        F + ESCG+C PCR G   
Sbjct: 405 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTRMESCGKCVPCRIGLKA 463

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  Q  +I+ L E+   I+  ++C LG  A  PI   IK FR   E  I+
Sbjct: 464 MLDILERITEGRGQAGDIETLLEMGSTIKKASLCGLGQTAPNPILSTIKYFREEYEAHIN 523

Query: 418 QYHRCN 423
              RC 
Sbjct: 524 D-RRCP 528


>gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
 gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
          Length = 595

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 236/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  ++K L E   + II E+K +GLRGRGGA
Sbjct: 109 FYQKQFRIVLRNCGFIDPENIDEYIAREGYQGLEKALFEMTGEEIIEELKTAGLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T MKW+F  +V +D   Y+V NADE +PG   DR     +PH+++E   I    IGA
Sbjct: 169 GFPTWMKWNFSRQVQND-TKYVVCNADEGDPGAYMDRSTCEGDPHSVLEAMTICGKTIGA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  FIY+R E+      L+ A+ +    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 228 NQGFIYIRAEYPLAIHRLEIAMKQAREYGLLGKNILGSGFDFDIEIRLGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+S+EGK+G P+ +PPFPA  GL+G PT +NNVE+ A VP IL +G +W++  G  +++
Sbjct: 288 LLQSIEGKRGMPQPRPPFPAVKGLWGKPTVINNVETWANVPVILTKGGNWFNKIGTADSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M  T  E+I    GGI        AV  GG S   + A  
Sbjct: 348 GTKVFALTGKIRNSGLVEVPMGTTLREIIYDIGGGIAHD-KKFKAVQTGGPSGGVITAEN 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+  L  +GS +G+  +IVMD    I+        F   ESCG+C PCR G   
Sbjct: 407 L-DTPIDFGSLIRIGSMMGSGGMIVMDEDDCIVDVAKFYLNFSVDESCGKCAPCRIGGKS 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++E++  G    +++D L  + + ++  ++CALG     P+   IK+F+      I 
Sbjct: 466 LCNILEKITAGNGTLKDLDTLANIGEAMKKGSLCALGQTTPNPVLSSIKHFKEEYLAHIV 525

Query: 418 QYHRCN 423
               C 
Sbjct: 526 D-KTCP 530


>gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 597

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 250/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
           +   Q RI   N   +   S+++ ++RG +  + K+L       ++NE+K SGLRGRGG 
Sbjct: 111 LFRKQHRIALRNCGMMDPDSVNEYIARGGYSGLAKMLDTMQPAEVVNEIKESGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW F  K  S    Y++ NADE +PG   DR ++  +PH+++EG +IA +AIGA
Sbjct: 171 GFPTATKWEFCSKAKS-NKKYIICNADEGDPGAFMDRSLLEGDPHSVLEGMIIAGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++Y+R E+    + ++ A+++    GLLG N    G+++++ +  GAGA++CGEETA
Sbjct: 230 DEGYLYIRAEYPLAIKRIRNAINQAKELGLLGENILGSGFNMELKIKEGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE++A +P I+ +GA  ++  G + ++
Sbjct: 290 LIASIEGERGVPRSRPPFPAIKGLFGKPTIINNVETLANIPYIIDQGAQTFASVGTDKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     VE  M I+  E++ +  GG         AV  GG S  CLP  +
Sbjct: 350 GTKVFALTGKVKNSGLVEVPMGISVREIVYEIGGGT-FEGKKFKAVQTGGPSGGCLPESK 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   G+ +G+  ++VMD  + +I        F + ESCG+CTPCREGT  
Sbjct: 409 L-DLPIDYDSLASAGTIMGSGGLVVMDEDSCMIDVAKYFLTFTRKESCGKCTPCREGTMR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++E++  G  +  ++D L  ++K I+   +C LG  A  PI   ++ FR   E  I 
Sbjct: 468 LLEMLEKITAGEGEMADLDRLERLAKTIKTSALCGLGQTAPNPILSTLQYFRKEYETHIK 527

Query: 418 QYHRCN 423
              +C 
Sbjct: 528 D-KKCP 532


>gi|325203363|gb|ADY98816.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M01-240355]
          Length = 433

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLGEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++  +  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFKLFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
           27021]
          Length = 624

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 238/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   +   +   S+ + ++   +   +K+L +   D +I E++ S LRGRGG 
Sbjct: 138 FYKKQTRLALEHCGHIDATSIEEYLAIDGYSAFEKVLFDMKADEVIKEIEESNLRGRGGG 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS + +   +   Y+V N DE +PG   DR IM  +PH ++EG +IA  A GA
Sbjct: 198 GFPAGRKWSQVSRQKEEI-RYIVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAGVACGA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L  A+++    G+LG N    G+  D+ ++ GAGA++CGE +A
Sbjct: 257 QKGYIYVRAEYPLAVSRLSNAIEQARKYGILGENILGTGFSFDLQINRGAGAFVCGEGSA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+G PT +NNVE+ A VP ++ +GA WY   G EN+ 
Sbjct: 317 LTASIEGKRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPIVINKGAEWYRSIGPENSP 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G++     +E  M  T  E+I    GGIR       AV  GG S  CL A  
Sbjct: 377 GTKAFALTGNIENTGLIEVPMGTTLREVIFDIGGGIR-DGKRFKAVQIGGPSGGCLTAEH 435

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK+ G+ +G+  ++VMD  T +++       F K+ESCG+C PCREGT  
Sbjct: 436 L-DLPLDFDSLKKAGAMIGSGGLVVMDEDTCMVEVARFFMNFTKNESCGKCVPCREGTKR 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E +V G  +  ++D+L E++  I    +C LG  A  P+   IKNF+    + I 
Sbjct: 495 MLVILEGIVAGKGKLEDMDMLLELADTISATALCGLGKTAPSPVVSTIKNFKDEYIKHIV 554

Query: 418 QYHRCN 423
              +C 
Sbjct: 555 D-KKCP 559


>gi|91782617|ref|YP_557823.1| putative NADH dehydrogenase I (chain F), NuoF [Burkholderia
           xenovorans LB400]
 gi|91686571|gb|ABE29771.1| NADH dehydrogenase subunit F [Burkholderia xenovorans LB400]
          Length = 442

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 206/416 (49%), Positives = 269/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSI
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSI 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 AGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G+ +  ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 369 IEHGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|330508800|ref|YP_004385228.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta
           concilii GP-6]
 gi|328929608|gb|AEB69410.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta
           concilii GP-6]
          Length = 628

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 237/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  +++ D ++ G +  + + L E   + +I EVK S LRGRGG 
Sbjct: 131 FYKYQMRHLIKNNIKINPRNIEDYIALGGYSALARALSEMTPEEVIEEVKRSNLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +   + P Y++VN DE +PG   DR +M   PH+++EG +IA++A+G+
Sbjct: 191 GFPTGRKWKSTREAPGE-PKYVIVNCDEGDPGAFMDRALMEGNPHSVLEGLIIAAYAMGS 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  FIYVR E+    ++   A+ +    GLLG N    G+D D+ +H GAG+++ GE TA
Sbjct: 250 HKGFIYVRMEYPLAVQNATLALQQAREYGLLGENILGTGFDFDVSIHRGAGSFVSGESTA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ +LEG  G+PR K    +  GL+G P+ +NNVE+ A VP I+  GA W++  G E ++
Sbjct: 310 LMNALEGWVGEPRPKYVHTSQKGLWGRPSALNNVETFANVPLIIEHGAKWFNSIGTERSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G VN    VE  M +T  ++I K  GGI G    L  V  GG S   +PA  
Sbjct: 370 GTKIFSLVGKVNNTGLVEVPMGMTLADIIYKIGGGIPGN-KKLKGVQTGGPSGGIIPARY 428

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +GS +G+ ++IV+D  T  +        F   ESCG+C PCREG   
Sbjct: 429 L-NTPVDFDELTSLGSMMGSGSIIVIDEDTCAVDLARYFVDFLCSESCGKCLPCREGLKR 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  +++ +  G   + +I  L E+++ +   ++CALG  A  P+   I+ FR   +  I 
Sbjct: 488 MREILDAIESGRGTETDIQTLQEIAELMRTASLCALGRTAVNPVLSTIRYFREEYDAHIK 547

Query: 418 QYHRCN 423
              RC 
Sbjct: 548 D-KRCP 552


>gi|307730335|ref|YP_003907559.1| NADH-quinone oxidoreductase subunit F [Burkholderia sp. CCGE1003]
 gi|307584870|gb|ADN58268.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1003]
          Length = 442

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 206/416 (49%), Positives = 271/416 (65%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIWEVYKRFEEALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSI
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSI 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F +L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFAKLMELAGGM--RGGRKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G+ ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 369 IEHGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
 gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
          Length = 595

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +++ L +   + IINE+K +GLRGRGGA
Sbjct: 109 FYQKQFRIVLRNCGVINPENIDEYIARDGYKALERALFDMKPEDIINELKTAGLRGRGGA 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T MKW+F  +   D   Y+V NADE +PG   DR  +  +PH++IE   IA  A+GA
Sbjct: 169 GFPTWMKWNFTKQAAGD-VKYIVCNADEGDPGAYMDRSTLEGDPHSIIEAMTIAGIAVGA 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IY+R E+    + LQ A+++    GLLG +    G+D DI +  GAGA++CGEETA
Sbjct: 228 HQGYIYIRAEYPLAIKRLQIAMEQSRGYGLLGKDILGSGFDFDIEIRLGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++G P+ +PPFPA  GL+GCPT +NNVE+ A VP I+ RG  W++  G E+++
Sbjct: 288 LLASIEGERGMPKPRPPFPATKGLWGCPTVINNVETWANVPVIISRGGDWFAKIGTEDSK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M  T  E++    GGI G      AV  GG S   + A  
Sbjct: 348 GTKVFALTGKIRNSGLVEVPMGTTLREIVYDIGGGIPGN-KAFKAVQTGGPSGGVITADY 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY  L+++GS +G+  +IVMD    I+        F   ESCG+C PCR G   
Sbjct: 407 L-DTPIDYSQLQKLGSIMGSGGMIVMDEDDCIVDVAKFYLGFTVEESCGKCAPCRVGGRT 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++R+ KG  +  +I+ L  + K ++  ++C LG  +  P+   +  F    +  I 
Sbjct: 466 LYNILDRITKGEGEMEDIERLKTIGKAMQKASLCGLGQTSPNPVMSTLHYFEDEYKAHIK 525

Query: 418 QYHRCN 423
              RC 
Sbjct: 526 D-KRCP 530


>gi|209518510|ref|ZP_03267331.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. H160]
 gi|209501055|gb|EEA01090.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. H160]
          Length = 442

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 268/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIAPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     +  + A++E   +G LG N    G+   +  HHG GAYICGEETALLES+EG
Sbjct: 131 HGEIWEVYKRFEEALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESIEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGRKIKAVIPGGSSAPVIPGDMMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G+ ++ ++DLL  V++NI GRTICALGDAAA P++G++K+F    E  +   H
Sbjct: 369 IEHGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHFWDEFEYHVAHKH 424


>gi|269469173|gb|EEZ80715.1| NADH dehydrogenase I chain F [uncultured SUP05 cluster bacterium]
          Length = 422

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 216/415 (52%), Positives = 271/415 (65%), Gaps = 6/415 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L   +  SL    + G +    KIL  E   D II+E+K SGLRGRGGAGF TG+KW
Sbjct: 6   FKTLDQKKSWSLKTYEANGGYSVWRKILKGELTPDQIIDELKTSGLRGRGGAGFPTGLKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+   D   Y+V N+DE EPGTCKDRDI+R  PH++IEG  I  F + A   + Y+R
Sbjct: 66  SFMPRNA-DMQKYVVCNSDEGEPGTCKDRDILRFNPHSVIEGMAIGGFVMNATKGYNYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF+      + A+ E Y +GLLG N  K     D+  H GAGAYICGEETALLESLEGK
Sbjct: 125 GEFMEPFYRFEGALKEAYKAGLLGENIDKSSISFDLYAHLGAGAYICGEETALLESLEGK 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPAN+GLYG PTT+NN ES A VP IL +G  W++  G EN+ G KLFS++
Sbjct: 185 KGQPRFKPPFPANIGLYGKPTTINNTESFASVPEILAQGGQWFADIGVENSGGCKLFSVT 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHVN P   E  M  +F +L++   G        L AVIPGGSS P L A    G  MDY
Sbjct: 245 GHVNKPSNFEVPMGTSFKDLLKMAGG--IRKGRKLKAVIPGGSSTPVLTADVAMGMTMDY 302

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DG+++ GS LG  +VIVMD +T +++ + RL+ FY  ESCGQCTPCREGTGW+ RV++R+
Sbjct: 303 DGIEKAGSMLGAGSVIVMDDTTCMVETLTRLAHFYYDESCGQCTPCREGTGWLYRVLKRI 362

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           + G  +  +IDLL  V + I G TICALGDAAA P++  ++NFR   E  I+   
Sbjct: 363 MDGNGKADDIDLLLGVQEKIIGNTICALGDAAAMPVESFLRNFREEFEYYIEHGK 417


>gi|296160634|ref|ZP_06843449.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. Ch1-1]
 gi|295889160|gb|EFG68963.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. Ch1-1]
          Length = 442

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 206/416 (49%), Positives = 268/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     +  + A+DE   +G LG N    G+  ++  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIWEVYKRFEQALDEARRAGFLGENIMGSGFSFELHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FSI
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSI 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 AGDVERPGNYEIPLGTPFATLMELAGG--VRGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G+ +  ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 369 IEHGLGRPEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|258516625|ref|YP_003192847.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257780330|gb|ACV64224.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 619

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 162/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R + + L     +S+ D ++ G ++ ++KIL    +  +I+E+K SGLRGRGG 
Sbjct: 133 FYKMQVRTVTSRLGRTNPESIVDYIATGGYEGLEKILSGMTQQQVIDEIKTSGLRGRGGG 192

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKW F      D   Y+V NADE +PG   DR ++  +PH+++EG +IA +AIGA
Sbjct: 193 GFPTGMKWQFTHNSPGD-KKYIVCNADEGDPGAFMDRSVLEGDPHSVLEGMIIAGYAIGA 251

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L  A+ +    G+LG N    G++  + +  GAGA++CGEETA
Sbjct: 252 DEGYIYVRAEYPLAIHRLNLAIAQAEEIGMLGENILDTGFNFKLRIKAGAGAFVCGEETA 311

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG +G PR++PPFPA  GL+  PT +NNVE+ A VP I+R+G  WY+  G E ++
Sbjct: 312 LLTSIEGNRGMPRVRPPFPAVKGLWEKPTNLNNVETYANVPFIIRKGGEWYASMGTEKSK 371

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G+K+F ++G +     VE  M I+  ++I K  GGI+       AV  GG S  CLP  +
Sbjct: 372 GSKVFCLTGKIKNTGLVEVPMGISVRDIIYKVGGGIQDD-KKFKAVQAGGPSGGCLPEEK 430

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   G+ +G+  ++VMD +T ++        F + ESCG+CTPCREGT  
Sbjct: 431 L-DLPVDYDSLNAAGAIMGSGGLVVMDETTCMVDVARFFLNFTQAESCGKCTPCREGTKR 489

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+  + R+ +G  +  +I+ L  + + I    +C LG   A PI   ++ F+      I+
Sbjct: 490 MLETLTRICEGTGKPEDIETLERMGRVITKTALCGLGQTCANPILSTMRYFKDEYLAHIN 549

Query: 418 QYHRCN 423
              RC 
Sbjct: 550 D-KRCP 554


>gi|134095026|ref|YP_001100101.1| NADH dehydrogenase I subunit F [Herminiimonas arsenicoxydans]
 gi|133738929|emb|CAL61976.1| NADH-quinone oxidoreductase subunit F (NADH dehydrogenase I subunit
           F) (NDH-1 subunit F) [Herminiimonas arsenicoxydans]
          Length = 431

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 266/416 (63%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L + + RG + ++ +IL      D +I E+KAS LRGRGGAGF +G+K
Sbjct: 13  ILAGLTG-DNWGLEEYVKRGGYASLKRILSEGMTSDQVIAEIKASTLRGRGGAGFPSGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMPK       YLV N+DE EPGT KDRDI+R+ PH +IEG  IA++A+G    + Y+
Sbjct: 72  WSFMPKNYEG-QKYLVCNSDEGEPGTFKDRDILRYNPHAVIEGMAIAAYAMGVSVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE   E    + A+++  A+G LG       Y   +   HG GAYICGEETALLES+EG
Sbjct: 131 HGEIFAEYARFEEALEQARAAGFLGDRILGSAYSFQLHAFHGYGAYICGEETALLESIEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I + GA  Y+  G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASYGLYGKPTTINNTETFAAVPFIFQVGADAYAAMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F EL++   G    G   L AVIPGGSSVP +    M    MD
Sbjct: 251 SGDVENPGNYEIPLGTPFAELLKLAGG--VRGGKKLKAVIPGGSSVPVVKGDLMMATDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 309 YDSVAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  +  ++D+L  ++ NI+GRTICALGDAAA P++ +I NFR   E  I+  H
Sbjct: 369 IENGQGRAEDLDMLNSIADNIQGRTICALGDAAAMPVRAMILNFREEFEYHIEHKH 424


>gi|297201628|ref|ZP_06919025.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC
           29083]
 gi|297147935|gb|EDY55035.2| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC
           29083]
          Length = 449

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 199/410 (48%), Positives = 257/410 (62%), Gaps = 6/410 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +
Sbjct: 30  SWTLDVYQRHEGYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGK 88

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           PHYLVVNADESEPGTCKD  ++   PH+LIEG +IA +AI +  AFIY+RGE +     L
Sbjct: 89  PHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACYAIRSSHAFIYLRGEVVPVLRRL 148

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            +AV E YA+G LG N    G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PPF
Sbjct: 149 HSAVSEAYAAGYLGQNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 208

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY CPT VNNVESIA VP IL+RG  W+   G E + G  L+S+SGHV  P   E
Sbjct: 209 PAVAGLYACPTVVNNVESIASVPAILQRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYE 268

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + IT  +L+E   G        L    PGGSS P      +    +DY+G+   GS L
Sbjct: 269 APLGITLRQLLEMSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSML 325

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++
Sbjct: 326 GTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSDL 385

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 386 DKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGRG-CPFD 434


>gi|160900607|ref|YP_001566189.1| NADH-quinone oxidoreductase subunit F [Delftia acidovorans SPH-1]
 gi|160366191|gb|ABX37804.1| NADH-quinone oxidoreductase, F subunit [Delftia acidovorans SPH-1]
          Length = 452

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 218/421 (51%), Positives = 277/421 (65%), Gaps = 11/421 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I+ +L G    S+ D  +RG +  + KIL K       +D +I  VK SGLRGRGGAGF 
Sbjct: 30  IYADLTGAN-WSIKDYEARGGYQALRKILGKDGSEGLTQDQVIATVKESGLRGRGGAGFP 88

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       +LV N+DE EPGTCKDRDI+ H PH +IEG +IA++A+G    
Sbjct: 89  TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILVHNPHIVIEGMIIAAYAMGISLG 147

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE     E  +AA++E  A+G LG N     +   +  HHG GAYICGEETALLE
Sbjct: 148 YNYIHGEIFEAYERFEAALEEARAAGYLGDNIMGSSFSFQLHAHHGFGAYICGEETALLE 207

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN GTK
Sbjct: 208 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGGTK 267

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG VN P   E  +   F +L+E   G        L AVIPGGSS P LPA  +  
Sbjct: 268 IFSVSGDVNLPGNYEVPLGTPFSKLLELAGG--VRTGRKLKAVIPGGSSSPVLPADIIME 325

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S D+++++ RLS FY+HESCGQCTPCREGTGW+ R
Sbjct: 326 CTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLLRLSYFYQHESCGQCTPCREGTGWLWR 385

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+  G  +  +I+LL  VS NI GRTICALGDAAA P++ +IK+FR   E +I    
Sbjct: 386 VVNRIEHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQNAS 445

Query: 421 R 421
           +
Sbjct: 446 K 446


>gi|91203919|emb|CAJ71572.1| similar to proton-translocating NADH dehydrogenase I, 51 kDa
           subunit (NuoF) [Candidatus Kuenenia stuttgartiensis]
          Length = 616

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 147/418 (35%), Positives = 240/418 (57%), Gaps = 6/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I  N   +   S+ + ++RG ++ + K+L+    + +I EV  SGLRGRGG GFSTG KW
Sbjct: 140 ILRNCGYIDPDSIEEYIARGGYEALKKVLKTMSPEQVIEEVSKSGLRGRGGGGFSTGNKW 199

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           +   K  +D   +++ NADE +PG   DR ++  +PH ++EG +I  +AIGA   +IY+R
Sbjct: 200 ASCAKYSTD-EKFVICNADEGDPGAFMDRSLLEGDPHAVLEGMIIGGYAIGATSGYIYIR 258

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+      ++  +++    G LG N    GY ++I +  GAGA++CGE TAL  S+EGK
Sbjct: 259 AEYPLAVRRIKHTIEQAGKYGFLGENILGSGYSLNIYIKEGAGAFVCGESTALQYSIEGK 318

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PP     GL+  PT +NNVE+ A VP ++ +GA WY+  G + ++GTK+FS++
Sbjct: 319 RGMPRTRPPQSVEAGLWDKPTVLNNVETFANVPLVMNKGAGWYAQMGTDKSKGTKIFSLT 378

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G + +P  VE  M  T  +++    GGI        AV  GG S  CLP   +    +DY
Sbjct: 379 GKIKHPGLVEVPMGTTIRQIVFDIGGGIP-RKRRFKAVQIGGPSGGCLPES-LLDFPIDY 436

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L E+G+ +G+ + +V+D  T +++       F   ESCG+C PCR GT  M+ ++ R+
Sbjct: 437 ESLLEIGAMMGSGSFVVVDDGTCMVEMARFFMDFCARESCGKCPPCRIGTTLMLDILTRI 496

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            +G+ ++ +I +L E+   ++  ++C LG +A  PI+  ++ F+      I     C 
Sbjct: 497 TQGMGEEGDIAMLEEMCGEVKTMSLCGLGQSAPNPIKSTLRYFKDEYIAHIRD-KICP 553


>gi|308388466|gb|ADO30786.1| NADH dehydrogenase I chain F [Neisseria meningitidis alpha710]
          Length = 433

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 200/406 (49%), Positives = 259/406 (63%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL     +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSGNISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + V  I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGKM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|30249732|ref|NP_841802.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Nitrosomonas
           europaea ATCC 19718]
 gi|30180769|emb|CAD85683.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit [Nitrosomonas
           europaea ATCC 19718]
          Length = 425

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/410 (50%), Positives = 270/410 (65%), Gaps = 7/410 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
               L + + R  +  + KIL +    + +I+EVK S LRGRGGAGF TG+KWSFMPK  
Sbjct: 18  DNWRLKNYLKRDGYAALKKILSQKISPEAVIDEVKKSALRGRGGAGFPTGLKWSFMPKQY 77

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +    YLV N+DE EPGT KDRDIMR+ PH LIEG +IA++A+G    + YV GE     
Sbjct: 78  TG-EKYLVCNSDEGEPGTFKDRDIMRYNPHILIEGMLIAAYAMGIRTGYNYVHGEIWDVY 136

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E ++ AV+E   +G LG N    G+   +  HHG GAYICGEETALLES+EGKKGQPR K
Sbjct: 137 ERMEEAVEEANVAGFLGDNILGSGFSFRLYNHHGYGAYICGEETALLESIEGKKGQPRFK 196

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPAN GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS+SGHVN P 
Sbjct: 197 PPFPANFGLYGKPTTINNTETFASVPWIIRNGGERYLQLGKPNNGGTKIFSVSGHVNKPG 256

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  M   F +L+E   G    G   L   IPGGSS+P LP   M    MDYD + + G
Sbjct: 257 NYEVPMGTPFAKLLELAGGM--RGGRKLKGCIPGGSSMPVLPGDIMMETDMDYDSIAKAG 314

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVI+MD +T +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  + 
Sbjct: 315 SMLGSGAVIIMDDTTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIINRIEHGKGRV 374

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            ++DLL  ++ NI+GRTICALGDAAA P++ ++++FR      I ++ +C
Sbjct: 375 EDLDLLDNLADNIQGRTICALGDAAAMPVRAMLQHFRDEFVFHI-EHKKC 423


>gi|325267322|ref|ZP_08133984.1| NADH-quinone oxidoreductase subunit F [Kingella denitrificans ATCC
           33394]
 gi|324981259|gb|EGC16909.1| NADH-quinone oxidoreductase subunit F [Kingella denitrificans ATCC
           33394]
          Length = 433

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/418 (49%), Positives = 267/418 (63%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQG--KSLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTG 63
           IF ++        +L+   +RG +  + KIL +      +I+EVKASGLRGRGGAGF TG
Sbjct: 9   IFKDVNTQDPNCWTLAAYQARGGYQALRKILSEKTPQNDVIDEVKASGLRGRGGAGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSFMP+       Y+V N DE EPGT KDRDI+ + PH LIEG +IA +A+ A   + 
Sbjct: 69  LKWSFMPRSLPG-AKYVVCNTDEGEPGTFKDRDIIMYNPHALIEGMIIAGYAMCAEAGYN 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+ GE     +  +AA+ E   +GLLG N    G+D ++  HHG GAYICGEETALLESL
Sbjct: 128 YIHGEIFEGFQRFEAALKEAREAGLLGKNIMGSGFDFELFAHHGYGAYICGEETALLESL 187

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGKKGQPR KPPFPA+ GLYG PTT+NN E+++ +P I+R G   ++  G E   GTKLF
Sbjct: 188 EGKKGQPRFKPPFPASFGLYGKPTTINNTETLSSIPFIIRDGGKTFADQGIEGAGGTKLF 247

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           SISGHV  P   E  +   F +L+E   G    G   L AVIPGGSS P LP   M G  
Sbjct: 248 SISGHVERPGNYEVPLGTPFAKLLEMAGGM--RGGKKLKAVIPGGSSAPVLPGDIMMGLN 305

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MDYD + + GS LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ RV+
Sbjct: 306 MDYDSIAKAGSMLGSGAIIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRVV 365

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            R+  G  +  +++LL  V  N+ GRTICAL DAA +P++   K+FR   E  I+   
Sbjct: 366 HRIASGKGRPDDLELLDSVGNNMAGRTICALADAAVFPVRSFTKHFRAEFEHYIEHGK 423


>gi|148266249|ref|YP_001232955.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
 gi|146399749|gb|ABQ28382.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
          Length = 593

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 166/426 (38%), Positives = 247/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
            +  Q R+  T    +   SL   +    +  ++K ++      +I+EVK SGLRGRGG 
Sbjct: 109 FVDQQMRVVMTGCGQIDPDSLEAYLEEDGFKAIEKCIKTMKPAEVIDEVKKSGLRGRGGG 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKWSF      D   YL+ NADE +PG   DR ++  +P  +IEG +I+++AIG 
Sbjct: 169 GFPTGMKWSFCAASPGD-KKYLICNADEGDPGAFMDRSVLEGDPFCIIEGMMISAYAIGC 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++YVR E+    + LQ A+D CY  G LG N    G+D D+ +  GAGA++CGEETA
Sbjct: 228 YYGYVYVRAEYPLAIQRLQHAIDICYEKGWLGKNIQGWGFDFDMRIKMGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V  I+ +GA WY+  G +  +
Sbjct: 288 LMASIEGERGMPRPRPPFPAVKGLWGKPTNINNVETFANVRHIINKGADWYASLGTDTTK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V +   VE +  ++  ++I   CGGI        AV  GG S  C+PA  
Sbjct: 348 GTKIFAVTGKVKHTGLVEVAAGMSVRQVIYDVCGGIANNRK-FKAVQAGGPSGGCIPAEV 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD +T ++        F + ESCG+C PCR G   
Sbjct: 407 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTRMESCGKCVPCRIGLKA 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  Q  +ID L E+   I+  ++C LG  A  PI   +K FR   E  I+
Sbjct: 466 MLDILERITEGRGQASDIDTLLEMGATIKKASLCGLGQTAPNPILSTVKYFRHEYEAHIN 525

Query: 418 QYHRCN 423
              RC 
Sbjct: 526 D-KRCP 530


>gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 617

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 165/422 (39%), Positives = 243/422 (57%), Gaps = 6/422 (1%)

Query: 4   DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            Q R + + L     + + D ++ G +  ++K L      IIN+VK SGLRGRGG GF T
Sbjct: 135 KQVRSVTSRLGRTNPERIEDYIATGGYAGLEKALTMEPQEIINQVKISGLRGRGGGGFPT 194

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW F+     D   Y+V NADE +PG   DR ++  +PH ++EG +IA +AIGA+   
Sbjct: 195 GTKWQFVADAVGD-KKYIVCNADEGDPGAFMDRSVLEGDPHAIMEGMMIAGYAIGANEGV 253

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY R E+    + L  A+      G+LG N     ++  + +  GAGA++CGEETALL S
Sbjct: 254 IYCRAEYPLAIKRLNMAIAVAEEMGILGDNIMGTDFNFKLRIKAGAGAFVCGEETALLNS 313

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G PR++PPFPA+ GL+  PT +NNVE+ A +P I+R G  WY+  G E ++G+K+
Sbjct: 314 IEGKRGMPRVRPPFPAHKGLWQKPTCLNNVETFANIPFIVRNGGDWYASMGTEKSKGSKV 373

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ++G +N     E  M IT  E++    GGI        AV  GG S  CLPA Q+   
Sbjct: 374 FCLTGKINNTGLAEVPMGITLREVVFNIAGGIA-DGKKFKAVQSGGPSGGCLPAEQL-DL 431

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DYD L   G+ +G+  ++VMD  T ++        F + ESCG+CTPCREGT  ++ +
Sbjct: 432 PIDYDSLISGGAMMGSGGLVVMDEGTCMVDVAKFFLNFTQLESCGKCTPCREGTKRLLEI 491

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +ER+  G+    +ID L  ++K I+   +CALG  A  P+   ++ FR   E  I++  R
Sbjct: 492 LERICDGLGVPEDIDTLERLAKTIKTSALCALGQTAPNPVLTTLRYFRNEYEAHINE-KR 550

Query: 422 CN 423
           C 
Sbjct: 551 CP 552


>gi|157364371|ref|YP_001471138.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314975|gb|ABV34074.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 541

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 166/427 (38%), Positives = 256/427 (59%), Gaps = 10/427 (2%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           + RI   N+  +  K++ + ++R  +  + ++L E   + +I+ VK SGLRGRGGAGF T
Sbjct: 109 ETRIVLRNVGLIDPKNIDEYIARDGYFALHRVLKEMKPNQVIDWVKESGLRGRGGAGFPT 168

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW    KV +D   Y+V NADE EPGT KDR IM  +PH++IE  VI  +A+GA   +
Sbjct: 169 GLKWDLTAKVQAD-QKYVVCNADEGEPGTFKDRLIMEGDPHSVIEAMVICGYAVGATKGY 227

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+RGE+    E++Q A+ + Y  G LG +    G+D D++V  GAGAYICGEETALLES
Sbjct: 228 IYIRGEYYGSVENIQKAIKDAYEYGFLGKDIMGSGFDFDLVVRLGAGAYICGEETALLES 287

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK G+PRLKPP+P   GL+G PT +NNVE+ A +P I++    W+  FG  ++ GTK+
Sbjct: 288 IEGKSGRPRLKPPYPPTNGLFGKPTVINNVETFANIPPIIQNDPGWFKSFGTPSSPGTKV 347

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+ G+V     VE  M +T  +LI +  GG+  G   L  V  GG++   +   ++   
Sbjct: 348 FSLVGNVVRRGIVEVPMGVTVRDLIYRFGGGL-VGGKQLYMVQTGGTAGTFVGVDKL-DV 405

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DYD  K  G  +G+  ++ M   T  +       +F++HESCG+CTPCREGT   +++
Sbjct: 406 ALDYDSFKNHGVSIGSGVILAMSEDTCPVDVALNTMMFFEHESCGKCTPCREGTRLSVQI 465

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID---- 417
           +ER+ KG  ++ +++ L +++   +  ++C LG +   P+  ++ NF       +     
Sbjct: 466 LERMSKGQGKEEDLETLRKIAIITQEASLCGLGQSINVPLLSILNNFEHDFLSHVGVEKC 525

Query: 418 QYHRCNF 424
            +  CNF
Sbjct: 526 PHGVCNF 532


>gi|239627948|ref|ZP_04670979.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239518094|gb|EEQ57960.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Clostridiales bacterium 1_7_47FAA]
          Length = 1032

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 160/424 (37%), Positives = 242/424 (57%), Gaps = 6/424 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   ++  SL   +SR  +  + K L       +++E+KASGLRGRGGA
Sbjct: 131 FFQGQVRIALRNCGHMEYASLEAYISRDGYGALAKALCGMTPQDVVDEMKASGLRGRGGA 190

Query: 59  GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TG+KW    K  S D   ++V NADE +PG   DR I+  +PH++IEG ++  +AIG
Sbjct: 191 GFPTGVKWEAGLKAVSEDGRKFMVCNADEGDPGAFMDRSILEGDPHSIIEGMMLGGYAIG 250

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   ++YVR E+    E L  A+D+   +G+LG +    G+  D+ +  GAGA++CGEET
Sbjct: 251 ASKGYVYVRAEYPIAVERLGNAIDQARKAGILGEDIMGSGFSFDLEIRIGAGAFVCGEET 310

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           +LL S+EGK+G+PR KPPFP   GL+  PT +NNVE++A V  I+  G+ WY GFG E +
Sbjct: 311 SLLASIEGKRGEPRQKPPFPFEKGLFESPTIINNVETLANVAPIILNGSGWYHGFGTEKS 370

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+F+++G +     +E  M     ++     GG   G     A+  GG S  CL   
Sbjct: 371 AGTKVFALAGDIVNAGIIEVPMGTVLGDI-IYRIGGGIIGGKRFKAIQSGGPSGGCLTRE 429

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DY+ L ++G+ +G+  +IVM+  T ++        F   ESCG+C PCR GT 
Sbjct: 430 HL-NTSVDYESLSKLGAIMGSGGLIVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTR 488

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ER+ +G  +  ++DLL E++K I+   +C LG  A  P+   ++ FR   E  I
Sbjct: 489 RMLEILERITEGKGEPGDLDLLEELAKTIQQTAMCGLGQTAPNPVLSTLRYFRSEYEAHI 548

Query: 417 DQYH 420
            + H
Sbjct: 549 YEKH 552


>gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 630

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 148/425 (34%), Positives = 235/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +    +  + K++ E   + +I E+  SGLRGRGG 
Sbjct: 145 FYKKQRRIALKNCGVIDPEDIKEYIGAKGYLALGKVINEMTPEDVIKEITDSGLRGRGGG 204

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWS   K   D   Y++ NADE +PG   DR I+  +P+++IE   IA +AIGA
Sbjct: 205 GFPTGKKWSL-AKDSKDDIKYIICNADEGDPGAFMDRAILEGDPNSIIEAMAIAGYAIGA 263

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+    + L  A+++    G++G       ++ D+ + +GAGA++CGEETA
Sbjct: 264 SKGLIYIRAEYPLAVQRLMIAIEQAKEIGVIGEGILGSSFNFDVEIKYGAGAFVCGEETA 323

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+P  KPPFPA  GL+  PT+VNNVE+ A +  I+  G+ W+S  G   ++
Sbjct: 324 LVHSIEGCRGEPTTKPPFPAEKGLFNKPTSVNNVETFANITAIINNGSQWFSSIGTNTSK 383

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M I  +E+I +  GGI+   +   AV  GG S  C+P   
Sbjct: 384 GTKVFALAGKIKNVGLVEVPMGIKLEEIIYEIGGGIKDNKE-FKAVQTGGPSGGCIP-SM 441

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 442 LLDLPIDYESLNAVGSMMGSGGMIVMDEDDCMVDIAKFYLEFIVDESCGKCTPCRVGNKR 501

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++V+G   + +I  L ++SK I+   +C LG  A  PI   +  F       +D
Sbjct: 502 LLEILNKIVEGKGTEDDIKKLKDLSKVIKDTALCGLGQTAPNPILSTMTYFMDEYNAHVD 561

Query: 418 QYHRC 422
           +  +C
Sbjct: 562 E-KKC 565


>gi|183981493|ref|YP_001849784.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone
           oxidoreductase chain F) [Mycobacterium marinum M]
 gi|183174819|gb|ACC39929.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone
           oxidoreductase chain F) [Mycobacterium marinum M]
          Length = 448

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/420 (49%), Positives = 273/420 (65%), Gaps = 10/420 (2%)

Query: 12  LYGLQG--KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            Y       +L+       +  ++K L  G D +I  VK SGLRGRGGAGFSTG KWSF+
Sbjct: 14  RYWDDPESWTLATYRRHDGYRALEKALAMGPDAVIGTVKDSGLRGRGGAGFSTGTKWSFI 73

Query: 70  PKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           P+  +     PHYLVVNADESEPGTCKD  +M   PH L+EG +IA++AI A  AFIYVR
Sbjct: 74  PQGDAGPAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVR 133

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE +     LQ AV E YA+GLLG N    G+D++++VH GAGAYICGEETALL+SLEG+
Sbjct: 134 GEVLPVLRRLQNAVAEAYAAGLLGRNINGSGFDLELVVHAGAGAYICGEETALLDSLEGR 193

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +GQPRL+PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+S
Sbjct: 194 RGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLS 253

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  + IT  EL+  + GGIR G   L    PGGSS P L    +    +DY
Sbjct: 254 GHVTRPGQYEAPLGITLRELL-DYAGGIRAG-HQLKFWTPGGSSTPLLTDEHL-DVPLDY 310

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G+  +GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++  RL
Sbjct: 311 EGVGGVGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYARL 370

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             G   + +ID L ++S +I G++ CALGD AA P+   IK+F+      ++Q   C F 
Sbjct: 371 ETGKGTREDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFQDEYIAHVEQGG-CPFD 429


>gi|307304399|ref|ZP_07584150.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           BL225C]
 gi|306902601|gb|EFN33195.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           BL225C]
          Length = 421

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/423 (46%), Positives = 267/423 (63%), Gaps = 6/423 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +  N+    G  LS   + G +  + K L E   D I+  VK S LRGRGGAGF TG
Sbjct: 3   EPVLLRNIDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+PK    +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++
Sbjct: 63  MKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE++     ++ A+ E + +G LG      G++  + +H GAGAYICGEETA+LESL
Sbjct: 122 YIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNFMVHIHRGAGAYICGEETAMLESL 181

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG++W+ G G + + G KL+
Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLY 241

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG V  P   E  M I+  EL+E+H GG   G   + AVIPGG S P +P G++    
Sbjct: 242 CLSGQVRKPGLYELPMGISLRELVEEHAGGPLPGRK-VKAVIPGGVSAPVIPEGELE-VG 299

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS LG+A V+V+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+
Sbjct: 300 MDFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVL 359

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+  G  +  +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC
Sbjct: 360 RRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRC 418

Query: 423 NFQ 425
            F 
Sbjct: 419 PFH 421


>gi|289523903|ref|ZP_06440757.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502559|gb|EFD23723.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 986

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 160/423 (37%), Positives = 243/423 (57%), Gaps = 7/423 (1%)

Query: 4   DQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
           +Q RI   N   +  + + + ++R  +  + K L +     +I EVK+S LRGRGG GF 
Sbjct: 57  NQTRILLRNCGLINPERIEEYIAREGYQGLAKALYKMSPQHVIEEVKSSNLRGRGGGGFP 116

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K  ++ P Y++ NADE +PG   DR ++  +PH LIEG +IA +AIGA   
Sbjct: 117 TGVKWDLTRKNPAE-PKYVICNADEGDPGAFMDRSLIEGDPHALIEGMLIAGYAIGAQKG 175

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY R E+    + L+ A+D+    GLLG       ++ DI +  GAGA++CGEETAL+ 
Sbjct: 176 FIYCRAEYPLAIQRLKIAIDQAKEYGLLGEGILGSNFNFDIEIKEGAGAFVCGEETALIA 235

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G+PR +PPFPA  GL+G PT +NNV+S A VP I+  G  W+S  G E ++GT 
Sbjct: 236 SIEGRRGEPRPRPPFPAEKGLWGKPTNINNVKSYAFVPQIILNGHEWFSSIGTEKSKGTA 295

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G V     +E  M  T  E+I     G+        AV  GG    CLP+  +  
Sbjct: 296 VFALTGKVKNTGLLEIPMGTTIGEIIFDVGEGVAKD-RQFKAVQTGGPLGGCLPSDAL-N 353

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L   G+ +G+  +IV+D +T +++       F   ESCGQCTPCR G   M+ 
Sbjct: 354 LPVDFDSLTASGALMGSGGMIVVDETTCMVELARFFLQFAVAESCGQCTPCRVGGNKMLE 413

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ KG  +  ++D+L E++K ++  ++CALG  A  P+   ++ FR   E  I    
Sbjct: 414 ILMRITKGQGKMEDLDMLEEIAKFMKKASLCALGQGAPNPVLSTLRYFRDEYERHILDL- 472

Query: 421 RCN 423
           RC 
Sbjct: 473 RCP 475


>gi|332184791|gb|AEE27045.1| NADH-ubiquinone oxidoreductase chain F [Francisella cf. novicida
           3523]
          Length = 424

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 212/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGGIR G   L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGIRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T I++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR      I+   R
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRDEFIYMIENNGR 419


>gi|326316104|ref|YP_004233776.1| NADH-quinone oxidoreductase subunit F [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372940|gb|ADX45209.1| NADH-quinone oxidoreductase, F subunit [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 452

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 215/422 (50%), Positives = 275/422 (65%), Gaps = 11/422 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGA 58
           + +I+  L G    S+ D  +RG +  + KIL         +D +I  VK SGLRGRGGA
Sbjct: 26  EPQIYAGLDGTN-WSIKDYEARGGYQALRKILGTDGGEPMTQDQVIATVKESGLRGRGGA 84

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFMP+       YLV N+DE EPGTCKDRDI++  PH +IEG +IA+FA+G 
Sbjct: 85  GFPTGLKWSFMPRSFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMIIAAFAMGI 143

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+ GE  +  E  + A++E  A+G LG N     +   +   HG GAYICGEETA
Sbjct: 144 SVGYNYIHGEIFQTYERFEEALEEARAAGYLGDNILGSSFSFQLHAAHGFGAYICGEETA 203

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN 
Sbjct: 204 LLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNG 263

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+SG V  P   E  +   F +L+E   G        L AVIPGGSS P LPA  
Sbjct: 264 GTKIFSVSGDVEKPGNYEVPLGTPFAKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASI 321

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW
Sbjct: 322 IMECTMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLLRLSYFYSHESCGQCTPCREGTGW 381

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M RV++R+  G  ++ ++DLL  V+ NI+GRTICALGDAAA P++ +IK+FRP  E  I 
Sbjct: 382 MWRVIDRIQHGQGREGDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALIR 441

Query: 418 QY 419
             
Sbjct: 442 NK 443


>gi|328952783|ref|YP_004370117.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453107|gb|AEB08936.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 613

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 170/411 (41%), Positives = 240/411 (58%), Gaps = 6/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+  +  + + D +++G +  + + L     + I+ EVKASGLRGRGGAGF TG+KW
Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF  +       Y++ N DE EPGT KDR I+  +PH L+EG  IA FA+GA   +IY R
Sbjct: 256 SFT-RPLDVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYCR 314

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+   +  L  A+ +  A G LG N    G+  DI V  G G YICGEETAL+ES+EGK
Sbjct: 315 GEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEGK 374

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR KPPFP   GL+  PT VNNVE++A +P I+ RG  WY   G  +  GTK++ I 
Sbjct: 375 RGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQII 434

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P  VE    IT  ELI+ + GG+R G         GG+S   +    +    +D+
Sbjct: 435 GHVRTPQIVEVPAGITLRELIDTYGGGMRDGGK-FKMCQTGGASAGIVGPEAL-DVPVDF 492

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
            G+ ++G  LG+  ++VMD S   +     ++VF+ HESCGQCTPCREGT  +++ + R+
Sbjct: 493 -GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTRI 551

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +G  Q  ++D L  + K +   + C LG  A  P+  L+K FR   E+ I
Sbjct: 552 WEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602


>gi|254373577|ref|ZP_04989063.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151571301|gb|EDN36955.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
          Length = 424

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/416 (50%), Positives = 264/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G   L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +  +++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETACMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR      I+   R
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419


>gi|328952781|ref|YP_004370115.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453105|gb|AEB08934.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 613

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 170/411 (41%), Positives = 240/411 (58%), Gaps = 6/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+  +  + + D +++G +  + + L     + I+ EVKASGLRGRGGAGF TG+KW
Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF  +       Y++ N DE EPGT KDR I+  +PH L+EG  IA FA+GA   +IY R
Sbjct: 256 SFT-RPLQVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYCR 314

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+   +  L  A+ +  A G LG N    G+  DI V  G G YICGEETAL+ES+EGK
Sbjct: 315 GEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEGK 374

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR KPPFP   GL+  PT VNNVE++A +P I+ RG  WY   G  +  GTK++ I 
Sbjct: 375 RGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQII 434

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P  VE    IT  ELI+ + GG+R G         GG+S   +    +    +D+
Sbjct: 435 GHVRTPQIVEVPAGITLRELIDTYGGGMRDGGK-FKMCQTGGASAGIVGPEAL-DVPVDF 492

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
            G+ ++G  LG+  ++VMD S   +     ++VF+ HESCGQCTPCREGT  +++ + R+
Sbjct: 493 -GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTRI 551

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +G  Q  ++D L  + K +   + C LG  A  P+  L+K FR   E+ I
Sbjct: 552 WEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602


>gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 588

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 157/424 (37%), Positives = 239/424 (56%), Gaps = 5/424 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q+R+  N  G +  +++ + ++ G +  +   L    + II E++A+ LRGRGG G
Sbjct: 104 FYQKQERVVINRSGFIDPENIDEYLNSGGYQALQLGLTMEPEDIITEIQAANLRGRGGGG 163

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW +  K       Y+V NADE +PG   DR I+  +PH +IEG  IA  AIGA+
Sbjct: 164 FPTGLKWEYAKKGDEKTEKYVVCNADEGDPGAFMDRSILEGDPHVVIEGMAIAGLAIGAN 223

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
              IYVR E+    + L+ A+ +    G LG       +  DI +  GAGA++CGEETAL
Sbjct: 224 RGIIYVRAEYPLAVKRLEKAISQAKEYGYLGERVLGSNFSFDIEIKQGAGAFVCGEETAL 283

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ES+ G +G PR +PPFPA  GLY  PT +NNVE++A +P IL  GA  Y+  G ++++G
Sbjct: 284 IESVHGNRGMPRPRPPFPAEKGLYDSPTILNNVETLANIPVILNWGAQKYNELGTKDSKG 343

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+I+G V      E  M I   +LI    GGI+   +   AV  GG S  CLP   +
Sbjct: 344 TKVFAITGKVRNTGLCEVPMGIKLKDLIFDIGGGIKDDKE-FKAVQIGGPSGGCLPQESL 402

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               ++YD L + G+ +G+  ++VMD ST ++        F + ESCG+C PCREGT  +
Sbjct: 403 -DFPIEYDSLIDAGAMMGSGGLVVMDTSTCMVDLSRFFLNFTQSESCGKCNPCREGTKRL 461

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI-D 417
           + ++ R++ G  +  ++ +L  +  NI   ++C LG +A  P+   I+ F     E I +
Sbjct: 462 LEILNRIIDGYGENEDLKILNRLGNNIINTSLCGLGQSAPNPVLSTIRYFENEYLEHINN 521

Query: 418 QYHR 421
           +Y R
Sbjct: 522 KYCR 525


>gi|307318106|ref|ZP_07597542.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           AK83]
 gi|306896147|gb|EFN26897.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium meliloti
           AK83]
          Length = 421

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 194/423 (45%), Positives = 266/423 (62%), Gaps = 6/423 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +  N+    G  LS   + G +  + K L E   D I+  VK S LRGRGGAGF TG
Sbjct: 3   EPVLLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+PK    +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++
Sbjct: 63  MKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE++     ++ A+ E + +G LG       ++  + +H GAGAYICGEETA+LESL
Sbjct: 122 YIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSDFNFMVHIHRGAGAYICGEETAMLESL 181

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG++W+ G G + + G KL+
Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVTRGSAWFRGIGPDRSPGPKLY 241

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG V  P   E  M I+  EL+E+H GG   G   + AVIPGG S P +P G++    
Sbjct: 242 CLSGQVRKPGLYELPMGISLRELVEEHAGGPLPGRK-VKAVIPGGISAPVIPEGELE-VS 299

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS LG+A V+V+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+
Sbjct: 300 MDFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVL 359

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+  G  +  +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC
Sbjct: 360 RRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRC 418

Query: 423 NFQ 425
            F 
Sbjct: 419 PFH 421


>gi|290958255|ref|YP_003489437.1| NADH dehydrogenase subunit NuoF [Streptomyces scabiei 87.22]
 gi|260647781|emb|CBG70886.1| NuoF, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
          Length = 452

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 200/425 (47%), Positives = 258/425 (60%), Gaps = 15/425 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
             D+DR           SL        ++ + K L    D +I  VK SGLRGRGGAGF 
Sbjct: 24  FWDEDR---------AWSLDVYRRHDGYEGLRKALAMSPDDVIAYVKESGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW F+P+    +PHYLVVNADESEPGTCKD  ++   PH+L+EG +IA +AI +  A
Sbjct: 75  TGMKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLVEGMIIACYAIRSSHA 133

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+RGE +     L  AV E Y +G LG N    G D+DI VH GAGAYICGEETALL+
Sbjct: 134 FIYLRGEVVPVLRRLHEAVREAYEAGFLGENILGSGLDLDITVHAGAGAYICGEETALLD 193

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++GQPRL+PPFPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  
Sbjct: 194 SLEGRRGQPRLRPPFPAVEGLYACPTVVNNVESIASVPAILHKGKEWFRSMGSEKSPGFT 253

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGHV  P   E  + IT  +L+E   G        L    PGGSS P      +  
Sbjct: 254 LYSLSGHVTSPGQYEAPLGITLRQLLEMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-D 310

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+G+   GS LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++
Sbjct: 311 VPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQ 370

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++  +  G     ++D L +++ NI G++ CALGD AA PI   +K FR   E+ I    
Sbjct: 371 LLRDIEAGKGVMSDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRAEYEDHITGRG 430

Query: 421 RCNFQ 425
            C F 
Sbjct: 431 -CPFD 434


>gi|284034164|ref|YP_003384095.1| NADH-quinone oxidoreductase subunit F [Kribbella flavida DSM 17836]
 gi|283813457|gb|ADB35296.1| NADH-quinone oxidoreductase, F subunit [Kribbella flavida DSM
           17836]
          Length = 433

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 201/412 (48%), Positives = 270/412 (65%), Gaps = 6/412 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++   L+     G ++ +   L      ++  VK SGLRGRGGAGF TGMKWSF+P+  +
Sbjct: 13  IRSWQLASYQRSGGYEALRTALRMQPADVVTAVKDSGLRGRGGAGFPTGMKWSFIPQD-N 71

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +P YLVVNADESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIYVRGE +    
Sbjct: 72  PKPKYLVVNADESEPGTCKDIPLMLASPHTLVEGVIIASYAIRASTAFIYVRGEVLHVIR 131

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            LQ AV+E  A+GL+G++    GYD+D+IVH GAGAYICGEETALL+SLEG++GQPRL+P
Sbjct: 132 RLQQAVEEAKAAGLIGTDILGSGYDLDVIVHAGAGAYICGEETALLDSLEGRRGQPRLRP 191

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLYGCPT +NNVESIA VP I++ GA W+   G E ++G  L+S+SGHV  P  
Sbjct: 192 PFPAVAGLYGCPTVINNVESIASVPAIIKNGADWFGSMGTEKSKGMTLYSLSGHVTRPGQ 251

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  + IT  +L++   G        L    PGGSS P L A  +    +DY+G+  +GS
Sbjct: 252 YEAPLGITLRQLLDLAGG--VREGHELKFWTPGGSSTPLLTAEHL-DVPLDYEGVGSVGS 308

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+++++ERL  G   ++
Sbjct: 309 MLGTKALQIFDDTTCVVRAVLRWTEFYKHESCGKCTPCREGTWWLVQILERLEAGKGTEQ 368

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +++ L ++  NI GR+ CALGD A  PI   I+ F+            C F 
Sbjct: 369 DLETLLDLCDNILGRSFCALGDGATSPITSSIQYFKDEYLAHFTHGG-CPFD 419


>gi|293603924|ref|ZP_06686339.1| NADH-quinone oxidoreductase subunit F [Achromobacter piechaudii
           ATCC 43553]
 gi|292817761|gb|EFF76827.1| NADH-quinone oxidoreductase subunit F [Achromobacter piechaudii
           ATCC 43553]
          Length = 455

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 209/408 (51%), Positives = 261/408 (63%), Gaps = 7/408 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
             L D + RG ++ + KIL      + +I EVKASGLRGRGGAGF TG+KWSFMP+    
Sbjct: 46  WRLEDYVKRGGYEALKKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPG 105

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YLV N+DE EPGT KDRDI+R  PH +IEG  IA+FA+G    + Y+ GE     E 
Sbjct: 106 -QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAFAMGISVGYNYIHGEIFEVYER 164

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            + A++E  A+G LG       +   +   HG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 165 FEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPP 224

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A VP I+R     Y   G+ NN GTKLFSI+G V  P   
Sbjct: 225 FPASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTKLFSITGDVERPGNY 284

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F  L+E   G    G   L AVIPGGSS P LPA  +    MDYD + + GS 
Sbjct: 285 EIPLGTPFSTLLELAGGM--RGGKKLKAVIPGGSSAPVLPADIIMECTMDYDSIAKAGSM 342

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  +
Sbjct: 343 LGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGHGRPED 402

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +DLL  V+ NI GRTICALGDAAA P++G +K+FR      I ++  C
Sbjct: 403 LDLLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHI-EHKSC 449


>gi|317401993|gb|EFV82593.1| NADH dehydrogenase subunit I [Achromobacter xylosoxidans C54]
          Length = 455

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/408 (50%), Positives = 263/408 (64%), Gaps = 7/408 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
             L+D + RG ++ + KIL      + +I EVKASGLRGRGGAGF TG+KWSFMP+    
Sbjct: 46  WRLADYVKRGGYEALRKILTTGMKPEDVIAEVKASGLRGRGGAGFPTGLKWSFMPRAFPG 105

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YLV N+DE EPGT KDRDI+R  PH +IEG  IA++A+G    + Y+ GE     E 
Sbjct: 106 -QKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFEVYER 164

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            + A++E  A+G LG       ++  +   HG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 165 FEEALEEARAAGFLGDRILGSEFNFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPP 224

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A VP I+R     Y   G+ NN GTKLFSI+G V  P   
Sbjct: 225 FPASFGLYGKPTTINNTETFAAVPWIIRNSGQAYLEVGKPNNGGTKLFSITGDVERPGNY 284

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   F  L+E   G    G   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 285 EIPLGTPFSTLLELAGGM--RGGKKLKAVIPGGSSAPVLPADIMMETTMDYDAIAKAGSM 342

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  +
Sbjct: 343 LGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGHGRPED 402

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +D+L  V+ NI GRTICALGDAAA P++G +K+FR      I ++  C
Sbjct: 403 LDMLDNVAGNIMGRTICALGDAAAMPVRGFLKHFRDEFAHHI-EHKSC 449


>gi|114330930|ref|YP_747152.1| NADH-quinone oxidoreductase, F subunit [Nitrosomonas eutropha C91]
 gi|114307944|gb|ABI59187.1| NADH dehydrogenase subunit F [Nitrosomonas eutropha C91]
          Length = 425

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/410 (50%), Positives = 267/410 (65%), Gaps = 7/410 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
               L   + R  +  + KIL +    + +I EVK S LRGRGGAGF TG+KWSFMPK  
Sbjct: 18  NNWRLKSYLKRDGYVALKKILSQKIPPEVVIEEVKKSALRGRGGAGFPTGLKWSFMPKQY 77

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +    YLV N+DE EPGT KDRDIMR+ PH LIEG +IA++A+G    + YV GE     
Sbjct: 78  TG-EKYLVCNSDEGEPGTFKDRDIMRYNPHVLIEGMLIAAYAMGIRTGYNYVHGEIWDVY 136

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E ++ AV+E  A+G LG N    G+   +  HHG GAYICGEETALLES+EGKKGQPR K
Sbjct: 137 ERMEEAVEEANAAGFLGENILDSGFVFQLYNHHGYGAYICGEETALLESIEGKKGQPRFK 196

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPAN GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS+SGHVN P 
Sbjct: 197 PPFPANFGLYGKPTTINNTETFASVPWIMRNGGESYLQLGKPNNGGTKIFSVSGHVNKPG 256

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  M   F +L+E   G    G   L   IPGGSS+P LP   M    MDYD + + G
Sbjct: 257 NYEVPMGTPFSKLLELAGGM--RGGRKLKGCIPGGSSMPVLPGSIMMETDMDYDSIAKAG 314

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVI+MD +T +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  + 
Sbjct: 315 SMLGSGAVIIMDDTTCMVRALERLSYFYYEESCGQCTPCREGTGWLYRIINRIEHGKGRI 374

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            ++D+L  ++ NI+GRTICALGDAAA P++ ++ +F       I ++ +C
Sbjct: 375 EDLDVLNNLADNIQGRTICALGDAAAMPVRAMLHHFWDEFVFHI-EHKKC 423


>gi|119489274|ref|ZP_01622081.1| hydrogenase subunit [Lyngbya sp. PCC 8106]
 gi|119454748|gb|EAW35893.1| hydrogenase subunit [Lyngbya sp. PCC 8106]
          Length = 538

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 144/417 (34%), Positives = 243/417 (58%), Gaps = 7/417 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q  +     G +  + + + +S G +  +   + E   + +++E+  SGLRGRGGA
Sbjct: 112 FFSRQMLVVREHSGKIDPEKIGEYLSVGGYQALHHAIYEMTPEDVVSEITKSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+      Y++ NADE +PG   DR ++  +PH ++EG  IA +A+GA
Sbjct: 172 GYPTGLKWATVAKMPPG-QKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAGYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      LQ A+ +    G+LG+       +  + +  GAGA++CGEETA
Sbjct: 231 TQGYIYVRAEYPLAISRLQKAIQQAKRQGILGTQVFGSPVNFTVDIRVGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S++G +G PR +PP+PA  GL+G PT +NNVE++A +  I+R+GA W++  G E ++
Sbjct: 291 LIASIDGNRGVPRPRPPYPAVSGLWGEPTLINNVETLANIAPIIRKGADWFASIGTEKSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E  M I+  E++E+  GG+  G   + AV  GG S  C+P   
Sbjct: 351 GTKIFSLTGKIRNTGLIEVPMGISLREIVEEMGGGVPDG--EVKAVQTGGPSGGCIPV-H 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L ++GS +G+  ++VMD+ T +I+       F + ESCG+C PCR GT  
Sbjct: 408 LLDTPVDYESLTKLGSMMGSGGMVVMDQGTSMIQVAQFYMDFCREESCGKCIPCRAGTVQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           M +++ +L+K  A   +++ L E+ + ++  ++C LG  A  PI   +  F     E
Sbjct: 468 MYQLLTKLIKKQATAADLEKLKELCEMVKATSLCGLGQTAPNPIVSTLHYFESEYTE 524


>gi|16263282|ref|NP_436075.1| NuoF2 NADH I chain F [Sinorhizobium meliloti 1021]
 gi|17380453|sp|P56913|NUOF2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit F 2; AltName:
           Full=NADH dehydrogenase I subunit F 2; AltName:
           Full=NDH-1 subunit F 2
 gi|14523959|gb|AAK65487.1| NuoF2 NADH:quinone oxidoreductase (chain F) [Sinorhizobium meliloti
           1021]
          Length = 421

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/423 (46%), Positives = 267/423 (63%), Gaps = 6/423 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +  N+    G  LS   + G +  + K L E   D I+  VK S LRGRGGAGF TG
Sbjct: 3   EPVLLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+PK    +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++
Sbjct: 63  MKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE++     ++ A+ E + +G LG      G++  + +H GAGAYICGEETA+LESL
Sbjct: 122 YIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNFMVHIHRGAGAYICGEETAMLESL 181

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG++W+ G G + + G KL+
Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLY 241

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG V  P   E  M I+  EL+E+H GG   G   + AVIPGG S P +P G++    
Sbjct: 242 CLSGQVRKPGLYELPMGISLRELVEEHAGGPLPGRK-VKAVIPGGVSAPVIPEGELE-VG 299

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS LG+A V+V+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+
Sbjct: 300 MDFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVL 359

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+  G  +  +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC
Sbjct: 360 RRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE-RRC 418

Query: 423 NFQ 425
            F 
Sbjct: 419 PFH 421


>gi|328952766|ref|YP_004370100.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453090|gb|AEB08919.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 614

 Score =  482 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 170/411 (41%), Positives = 240/411 (58%), Gaps = 6/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+  +  + + D +++G +  + + L     + I+ EVKASGLRGRGGAGF TG+KW
Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF  +       Y++ N DE EPGT KDR I+  +PH L+EG  IA FA+GA   +IY R
Sbjct: 256 SFT-RPLDVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYCR 314

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+   +  L  A+ +  A G LG N    G+  DI V  G G YICGEETAL+ES+EGK
Sbjct: 315 GEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEGK 374

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR KPPFP   GL+  PT VNNVE++A +P I+ RG  WY   G  +  GTK++ I 
Sbjct: 375 RGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQII 434

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P  VE    IT  ELI+ + GG+R G         GG+S   +    +    +D+
Sbjct: 435 GHVRTPQIVEVPAGITLRELIDTYGGGMRDGGK-FKMCQTGGASAGIVGPEAL-DVPVDF 492

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
            G+ ++G  LG+  ++VMD S   +     ++VF+ HESCGQCTPCREGT  +++ + R+
Sbjct: 493 -GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTRI 551

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +G  Q  ++D L  + K +   + C LG  A  P+  L+K FR   E+ I
Sbjct: 552 WEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602


>gi|167627158|ref|YP_001677658.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597159|gb|ABZ87157.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 424

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+IMR+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNTPG-QKYVVCNSDEGEPGTCKDREIMRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLGSN K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGSNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLYG PT +NN E+ A  P IL+ G  W+   G E + GTKLF IS
Sbjct: 186 KGRPRFKPPFPAFKGLYGRPTNINNTETYASAPVILQHGGQWFKNLGTEKSGGTKLFCIS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV +   +E  +   F +++E  CGG+R G   L AVIPGGSS   L   +M    MDY
Sbjct: 246 GHVKHQKVMEIGLGTPFKDVLEM-CGGVRNG-HKLKAVIPGGSSSKILTGEEMLKVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + + E GS LG+ AV+V+D +T ++K + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAEAGSMLGSGAVVVLDETTCMVKTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR      I+   +
Sbjct: 364 VAGEGKPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYINKFREEFVYMIENGGK 419


>gi|297563972|ref|YP_003682945.1| NADH-quinone oxidoreductase, F subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848421|gb|ADH70439.1| NADH-quinone oxidoreductase, F subunit [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 439

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 195/411 (47%), Positives = 257/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L    + G +  + K L    D I++ VK SGLRGRGGAGF TGMKW F+P   + 
Sbjct: 16  DSFTLEGYRATGGYGALRKALAMEPDAIVDLVKKSGLRGRGGAGFPTGMKWGFLP-ADNP 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YLVVNADESEPGTCKD  +M   PH L+EG  IA++AI +  AFIYVRGE +     
Sbjct: 75  NPRYLVVNADESEPGTCKDIPLMLANPHVLVEGVAIAAYAIKSSQAFIYVRGEVLHVIRR 134

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ AV E Y +GLLG +    G+D+D++VH GAGAYICGEETALL+SLEG +GQPRLKPP
Sbjct: 135 LRRAVAEAYEAGLLGRDVLGTGFDLDVVVHAGAGAYICGEETALLDSLEGYRGQPRLKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVESIA VP+I+  GA W++  G E + G   FS+SGHV  P   
Sbjct: 195 FPAVAGLYASPTVVNNVESIASVPSIVANGAEWFTSMGTEKSAGFGFFSLSGHVANPGQY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + +T  EL++   G        L    PGGSS P      +    +D++ +   GS 
Sbjct: 255 EAPLGVTLRELLDMSGGM--RPGHRLKFWTPGGSSTPIFTEEHL-DTPLDFESVGAAGSM 311

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T ++KA+ R   FY HESCG+CTPCREG  WM++V++RL  G   + +
Sbjct: 312 LGTRALQIFDETTCVVKAVGRWIAFYAHESCGKCTPCREGNFWMVQVLDRLENGQGTEAD 371

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L ++  N+ GR+ CALGD A  P+   IK+FR    + +++   C F 
Sbjct: 372 LDKLLDICDNLLGRSFCALGDGATSPVTSSIKHFRQEYIDHVERGG-CPFD 421


>gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q+R +  N   +  K++ D ++ G +  + + L       ++ EVK + LRGRGGA
Sbjct: 131 FYRNQERNVICNNIKIDSKNIDDYLANGGYSALGEALGSMTPVEVLEEVKKANLRGRGGA 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G+KW    +   D   Y++VNADE +PG   DR ++   PH+++EG +I  +AIGA
Sbjct: 191 GFPAGVKWEG-SRNAPDPVKYVIVNADEGDPGAFMDRAVLEGNPHSVLEGLIIGGYAIGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E++  A+ +  A GLLG N    GY+  + V+ GAGA++CGE TA
Sbjct: 250 QEGYIYVRHEYPLAVENITLAIQQAEACGLLGENIFGSGYNFRVFVNQGAGAFVCGESTA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG+ G+PR K      VGL+G PT +NNVE+ A VP I+ +GA W++  G E+++
Sbjct: 310 LMTSIEGRAGEPRPKYVRSNVVGLWGHPTVLNNVETWANVPLIINKGADWFTSIGTESSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G +     VE  M I+  +++ K  GGI GG      V  GG S  C+P   
Sbjct: 370 GTKIFSLVGKIANTGLVEVPMGISLRDIVFKIGGGIPGGKKFKA-VQTGGPSGGCIPES- 427

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + +D L   GS +G+  +IVMD  T ++        F   ESCG+C PCREG   
Sbjct: 428 LLDLPVGFDELTAAGSMMGSGGMIVMDEDTCMVDTARYFVKFLTDESCGKCVPCREGLRQ 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ R+ +G   + +I+LL  +++  +  ++CALG +A  P    ++ FR   E  I 
Sbjct: 488 MDNILTRITEGKGGEGDIELLEALAETAQEASLCALGKSAPNPFLSTLQYFRDEYEAHIK 547

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 548 E-KRCP 552


>gi|5650749|emb|CAB51634.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
          Length = 421

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 194/423 (45%), Positives = 266/423 (62%), Gaps = 6/423 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +  N+    G  LS   + G +  + K L E   D I+  VK S LRGRGGAGF TG
Sbjct: 3   EPVLLRNVDVPDGHLLSTYEAGGGYRALRKALGEYTPDEIVELVKESNLRGRGGAGFPTG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+PK    +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++
Sbjct: 63  MKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE++     ++ A+ E + +G LG       ++  + +H GAGAYICGEETA+LESL
Sbjct: 122 YIRGEYVTAIRRMEQAIAEAHENGYLGVGILGSKFNFMVHIHRGAGAYICGEETAMLESL 181

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG++W+ G G + + G KL+
Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLY 241

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG V  P   E  M I+  EL+E+H GG   G   + AVIPGG S P +P G++    
Sbjct: 242 CLSGQVRKPGLYELPMGISLRELVEEHAGGPLPGRK-VKAVIPGGVSAPVIPEGELE-VG 299

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS LG+A V+V+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+
Sbjct: 300 MDFDSLTAAGSMLGSAGVVVIDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVL 359

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+  G  +  +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC
Sbjct: 360 RRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRC 418

Query: 423 NFQ 425
            F 
Sbjct: 419 PFH 421


>gi|311897895|dbj|BAJ30303.1| putative NADH-quinone oxidoreductase subunit F [Kitasatospora setae
           KM-6054]
          Length = 453

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 205/412 (49%), Positives = 270/412 (65%), Gaps = 6/412 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            +  +L      G +D +   L    D +I  VK SGLRGRGGAGF TGMKW F+P+   
Sbjct: 23  HRPWTLDTYRRHGGYDGLAAALAMPPDDVIALVKDSGLRGRGGAGFPTGMKWQFIPQND- 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +PHYLVVNADESEPGTCKD  ++   PH LIEG VIAS+AI    AF+Y+RGE +    
Sbjct: 82  GKPHYLVVNADESEPGTCKDIPLLFANPHALIEGMVIASYAIRCEHAFVYLRGEVVPVLR 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            LQAAV E YA+G LG +    G ++DI VH GAGAYICGEETALL+SLEG++GQPRL+P
Sbjct: 142 RLQAAVAEAYAAGYLGKDIQGSGINLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY CPT VNNVESIA VP IL RG  W++  G E + G  L+S+SGHV  P  
Sbjct: 202 PFPAIAGLYACPTVVNNVESIASVPPILARGKDWFTSLGTEKSPGFTLYSLSGHVTNPGQ 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  + IT  +L+E   GG+R G   L    PGGSS P      +    +DY+G+   GS
Sbjct: 262 YEAPLGITLRQLLE-ITGGVRAG-HRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGS 318

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT A+ V D +T +++A+ R + FY HESCG+CTPCREGT W++++++R+  G     
Sbjct: 319 MLGTKALQVFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLKRIEAGQGAPG 378

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +++ L +++ NI G++ CALGD AA PI   +++FR   E+ +++ HRC F 
Sbjct: 379 DLEKLLDIADNINGKSFCALGDGAASPIVSSLQHFRAEYEQHLNE-HRCPFD 429


>gi|254368970|ref|ZP_04984983.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157121891|gb|EDO66061.1| NADH dehydrogenase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 424

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 210/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G   L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T +++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR      I+   R
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419


>gi|325131608|gb|EGC54315.1| NADH:ubiquinone dehydrogenase, F subunit [Neisseria meningitidis
           M6190]
          Length = 433

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 199/406 (49%), Positives = 259/406 (63%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+++  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALEQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + V  I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVSFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCRE TGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCRESTGWLYRIVHRIVEGKGKM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|241667720|ref|ZP_04755298.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876264|ref|ZP_05248974.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842285|gb|EET20699.1| NADH dehydrogenase I [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 424

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+IMR+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNTPG-QKYVVCNSDEGEPGTCKDREIMRNNPHQLIEGMAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLGSN K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGSNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLYG PT +NN E+ A  P IL+ G  W+   G E + GTKLF IS
Sbjct: 186 KGRPRFKPPFPAFKGLYGRPTNINNTETYASAPVILQHGGQWFKNLGTEKSGGTKLFCIS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV +   +E  +   F +++E  CGG+R G   L AVIPGGSS   L   +M    MDY
Sbjct: 246 GHVKHQKVMEIGLGTPFKDVLEM-CGGVRNG-HKLKAVIPGGSSSKILTGEEMLKVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + + E GS LG+ AV+V+D +T ++K + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAEAGSMLGSGAVVVLDETTCMVKTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR      I+   +
Sbjct: 364 VAGDGKPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYINKFREEFVYMIENGGK 419


>gi|89900291|ref|YP_522762.1| NADH-quinone oxidoreductase subunit F [Rhodoferax ferrireducens
           T118]
 gi|89345028|gb|ABD69231.1| NADH-quinone oxidoreductase, F subunit [Rhodoferax ferrireducens
           T118]
          Length = 458

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 213/430 (49%), Positives = 273/430 (63%), Gaps = 20/430 (4%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE--------------KGRDWIINEVKASGLR 53
           I+ +L G     L D  SRG +  + KIL                  D +I  VK SGLR
Sbjct: 28  IYADLNGSN-WHLKDYESRGGYQALRKILAKNSGVTADDVTASGMTPDQVIAVVKESGLR 86

Query: 54  GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113
           GRGGAGF TG+KWSFMP+  +    YLV N+DE EPGTCKDR+I++  PH +IEG +IA+
Sbjct: 87  GRGGAGFPTGLKWSFMPRQYAG-QKYLVCNSDEGEPGTCKDREILQFNPHMVIEGMIIAA 145

Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYIC 172
           +A+G    + Y+ GE  +     + A++E  A+GLLG+N     +   +   HG GAYIC
Sbjct: 146 YAMGIAVGYNYIHGEIFKTYLRFEEAIEEARAAGLLGNNILGSDFSFQLHAAHGYGAYIC 205

Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232
           GEET+LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G
Sbjct: 206 GEETSLLESLEGKKGQPRYKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLACG 265

Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
           + N+ GTK+FSISG V  P   E  M   F +L+E   G        L AVIPGGSS P 
Sbjct: 266 KPNSGGTKIFSISGDVELPGNYEVPMGTPFSQLLELAGG--VRSGRQLKAVIPGGSSSPV 323

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           LP   M    MDYD + + GS LG+ AVIV+D S  ++K++ RLS FY HESCGQCTPCR
Sbjct: 324 LPGSIMMDCTMDYDSIAKAGSMLGSGAVIVLDDSRCMVKSLQRLSYFYMHESCGQCTPCR 383

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           EGTGW+ RV++R+  G     ++DLL  V++NI GRTICALGDAAA P++ +IK+FRP  
Sbjct: 384 EGTGWLSRVVDRIENGHGHVTDLDLLDNVAENIMGRTICALGDAAAMPVRAMIKHFRPEF 443

Query: 413 EERIDQYHRC 422
           E  + ++  C
Sbjct: 444 EYHV-EHKTC 452


>gi|302342222|ref|YP_003806751.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301638835|gb|ADK84157.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 633

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 156/424 (36%), Positives = 233/424 (54%), Gaps = 7/424 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
            Q  +  N+  +    ++DS++ G +  + K L E   + ++ EV+ SGLRGRGGAGF T
Sbjct: 148 QQRVVLRNIGRIDPTDIADSIAIGSYQALAKALLEMTPEHVVREVEKSGLRGRGGAGFPT 207

Query: 63  GMKWSFMPKVCS--DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           G KW            P Y+V N DE +PG   D  +M  +PH +IEG ++ +FA+GAH 
Sbjct: 208 GRKWRGAMAAAKKKGGPVYVVCNGDEGDPGAFMDCMVMEGDPHAVIEGMILGAFALGAHQ 267

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIYVR E+    + L  A+D+    GLLG N    G+  DI ++ GAGA++CGE TAL 
Sbjct: 268 GFIYVRAEYPVAIKHLTMAMDQARTLGLLGENILGSGFSFDIQINRGAGAFVCGESTALF 327

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK G+PR K    A  GL+G PT +NNVE+ A VP I+  G  W++G G  ++ GT
Sbjct: 328 TSIEGKAGEPRPKYVRSAEEGLWGKPTVLNNVETWANVPQIIENGGQWFAGIGVPHSTGT 387

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS+ G VN    VE  M +    ++E   GG+  G     AV  GG S  CLP   +R
Sbjct: 388 KVFSLVGKVNNVGLVEVPMGVPLRTIVEDIGGGVP-GGKPFKAVQTGGPSGGCLP-YALR 445

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D L + GS +G+  +IVMD    ++        F + ESCG+C PCR G   + 
Sbjct: 446 DVAVDFDSLTKAGSMMGSGGMIVMDERDCVVDVARYFLRFLEEESCGKCLPCRLGVTRLR 505

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            +++ +  G  ++ +I+ +  +S  ++  ++CALG +A  P+   +K FR      I   
Sbjct: 506 EMLDEISAGRGKEEDIEAILSLSAAVKDGSLCALGGSAPNPVLTTLKYFRDEYLAHITD- 564

Query: 420 HRCN 423
            +C 
Sbjct: 565 KKCP 568


>gi|264677203|ref|YP_003277109.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni
           CNB-2]
 gi|299530747|ref|ZP_07044162.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni S44]
 gi|262207715|gb|ACY31813.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni
           CNB-2]
 gi|298721263|gb|EFI62205.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni S44]
          Length = 454

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 217/421 (51%), Positives = 273/421 (64%), Gaps = 11/421 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I+ +L G    S+ D  +RG +  + K+L K       +D +I  +K SGLRGRGGAGF 
Sbjct: 35  IYADLNGSN-WSIKDYEARGGYQALRKLLGKDGGEGLTQDQVIATLKESGLRGRGGAGFP 93

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       +LV N+DE EPGTCKDRDI+   PH +IEG +IA+FA+G    
Sbjct: 94  TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILMFNPHIVIEGMIIAAFAMGISIG 152

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE     E  +AA++E  A+G LG N     +   +  HHG GAYICGEETALLE
Sbjct: 153 YNYIHGEIFEVYERFEAALEEARAAGYLGDNILGSSFSFQLHAHHGFGAYICGEETALLE 212

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK
Sbjct: 213 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 272

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG VN P   E  M   F +L+E   G        L AVIPGGSS P LPA  +  
Sbjct: 273 IFSVSGDVNLPGNYEVPMGTPFSKLLELAGG--VRTGRKLKAVIPGGSSSPVLPADIIMD 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S D+++ + RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 331 CTMDYDSISKAGSMLGSGAVIVMDDSRDMVECLLRLSYFYSHESCGQCTPCREGTGWLWR 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+  G  +  +I+LL  VS NI GRTICALGDAAA P++ +IK+FR   E +I    
Sbjct: 391 VVNRIQHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQNAS 450

Query: 421 R 421
           +
Sbjct: 451 K 451


>gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 625

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 151/425 (35%), Positives = 238/425 (56%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            +  Q RI   N      +SL++ ++ G +  ++K + E   D +I++V  SG+RGRGG 
Sbjct: 139 FIAKQTRIVLKNCGKFDAESLNEYIASGGFQALEKAMFEMDPDLVIDQVDKSGIRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW  + +   D  HY+V N DE +PG   D  +M  +P+ LIEG ++A++A+ A
Sbjct: 199 GFPAGKKWIQVARQA-DPVHYVVCNGDEGDPGAFMDGSVMEGDPYRLIEGMMLAAYAVRA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+ +    L+ A+      GLLG +    G+   + ++ GAGA++CGE +A
Sbjct: 258 QHGYIYVRAEYPQSVARLKHAIAVLEEVGLLGDDILGTGFSFHMHINRGAGAFVCGEGSA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+ A +P I+ +GA WY   G E + 
Sbjct: 318 LTASIEGNRGMPRVKPPRTVEQGLWAKPTVLNNVETYANIPEIILKGADWYRSIGTEGSP 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FS++G +     +E  M  T  E+I    GG++ G     AV  GG S  CL    
Sbjct: 378 GTKTFSLTGSIENTGLIEVPMGTTLREIIFDIGGGLKSGA-AFKAVQIGGPSGGCLTEEH 436

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D +K+ G+ +G+  ++VMD  T +++       F + ESCG+C PCR GT  
Sbjct: 437 L-DVPLDFDSVKKYGAIVGSGGLVVMDEHTCMVEVARFFMGFTQRESCGKCGPCRIGTKR 495

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  +  ++D L  +   I+ R++C LG +A  P+   ++NFR    E I 
Sbjct: 496 MLEILERIVDGKGEVEDLDKLEHLGNFIKDRSLCGLGKSAPLPVLSTLRNFRDEYVEHIV 555

Query: 418 QYHRC 422
              +C
Sbjct: 556 D-KKC 559


>gi|77919203|ref|YP_357018.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545286|gb|ABA88848.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 148/425 (34%), Positives = 233/425 (54%), Gaps = 7/425 (1%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
           +  Q RI T   G +  +S+   ++ G +  + K L +     +I  +K SGLRGRGGAG
Sbjct: 1   MATQLRIATRNSGFIDPESVESYIAVGGYQALGKCLSKMKPADVIELMKNSGLRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F  K  SD   ++V NADE +PG   DR ++  +PH+++E   I ++AIG +
Sbjct: 61  FPTGVKWGFAAKYESDI-KHVVCNADEGDPGAFMDRAVLEGDPHSVLEAMAIGAYAIGGN 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
              IY+R E+      L+ A+++    G+LG N     +  D+ + +GAGA++CGEETAL
Sbjct: 120 KGTIYIRAEYPLAIARLKMAIEQAKEMGVLGDNIMGTDFCFDLELKYGAGAFVCGEETAL 179

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG +G+P  KPPFPA  G +  PT VNNVE++A +P I+ +GA W++  G E ++G
Sbjct: 180 INSMEGNRGEPYTKPPFPAEAGYWNKPTIVNNVETLANIPAIIMKGADWFNKIGTETSKG 239

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F I G +     +E  M  T  E+I    GGI GG +   AV  GG S   L    +
Sbjct: 240 TKVFCICGKIANVGLIEVPMGTTLKEVIYDIGGGIPGGKE-FKAVQTGGPSGGALTYKDL 298

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A +DY+ L    S +G+  +IVMD    ++        F   E+CG+CTPCR G+  +
Sbjct: 299 -DAPIDYENLVARQSMMGSGGMIVMDEEDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRI 357

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +++++  G   + +++ L  +S NI+   +C LG     P+   ++ F       +  
Sbjct: 358 YELLDKITIGQGTEEDLEKLRSLSVNIKDTALCGLGQTMPNPVLSTMRVFEDEYRAHVID 417

Query: 419 YHRCN 423
             +C 
Sbjct: 418 -KKCP 421


>gi|89257085|ref|YP_514447.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115315442|ref|YP_764165.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167009477|ref|ZP_02274408.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656768|ref|YP_001429364.2| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254368321|ref|ZP_04984339.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|290952994|ref|ZP_06557615.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313814|ref|ZP_06804387.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144916|emb|CAJ80264.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|115130341|gb|ABI83528.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134254129|gb|EBA53223.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|164551836|gb|ABU62408.2| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 424

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 210/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G   L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVNMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T +++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCMVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR      I+   R
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419


>gi|150375769|ref|YP_001312365.1| NADH-quinone oxidoreductase subunit F [Sinorhizobium medicae
           WSM419]
 gi|150030316|gb|ABR62432.1| NADH-quinone oxidoreductase, F subunit [Sinorhizobium medicae
           WSM419]
          Length = 421

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 191/423 (45%), Positives = 263/423 (62%), Gaps = 6/423 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +  N+    G  LS     G +  + K L E   D I+  VK S LRGRGGAGF TG
Sbjct: 3   EPVLLRNVDVPDGHLLSTYQVGGGYQALTKALGEYTPDEIVELVKESNLRGRGGAGFPTG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+PK    +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++
Sbjct: 63  MKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE++     ++ A+ + + +G LG+      +   + +H GAGAYICGEETA+LESL
Sbjct: 122 YIRGEYVTAIRRMEQAIAQAHENGYLGTGILGSNFKFMVHIHRGAGAYICGEETAMLESL 181

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG++W+ G G + + G KL+
Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGSAWFRGIGPDRSPGPKLY 241

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG V  P   E  M I+  EL+E++ GG   G   + AVIPGG S P +P   +    
Sbjct: 242 CVSGQVRKPGLYELPMGISLRELVEEYAGGPLPGRK-VKAVIPGGVSAPVIPESDLE-VG 299

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS LG+A V+V+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+
Sbjct: 300 MDFDSLAAAGSMLGSAGVVVIDDSTCMVKIATRIIEFFHHESCGKCTPCREGLNWTVKVL 359

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+  G  +  +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC
Sbjct: 360 RRIEAGEGETGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRC 418

Query: 423 NFQ 425
            F 
Sbjct: 419 PFH 421


>gi|288942129|ref|YP_003444369.1| NADH-quinone oxidoreductase subunit F [Allochromatium vinosum DSM
           180]
 gi|288897501|gb|ADC63337.1| NADH-quinone oxidoreductase, F subunit [Allochromatium vinosum DSM
           180]
          Length = 427

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 217/427 (50%), Positives = 274/427 (64%), Gaps = 9/427 (2%)

Query: 1   MLTDQDRIFTNLYGLQG---KSLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGR 55
           M+  Q+ +      L      +L+     G +   ++IL +  D   +I EVK S LRGR
Sbjct: 1   MVERQNTVCFRNQHLDPAIRHTLAAYRDLGGYAQWERILRERPDPADLIEEVKRSALRGR 60

Query: 56  GGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFA 115
           GGAGF TG+KWSFMP+       Y+V N+DE EPGTCKDRDI+R+ PH LIEG  IA + 
Sbjct: 61  GGAGFPTGLKWSFMPRQAPG-QKYIVCNSDEGEPGTCKDRDILRYNPHQLIEGMAIAGYC 119

Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGE 174
           IGA   + Y+RGEF    E  + AV E YA+GLLG +    G D D+  H GAGAYICGE
Sbjct: 120 IGATVGYNYIRGEFYEPIERFEDAVREAYAAGLLGRDIQGSGVDFDLYAHMGAGAYICGE 179

Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234
           ETALLES+EGKKGQPR KPPFPA VGLYG PTT+NN ES+A +P IL +G  W+   GR 
Sbjct: 180 ETALLESIEGKKGQPRYKPPFPAQVGLYGRPTTINNTESLASIPVILEKGGQWFLEQGRP 239

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
           NN G KLFS+SGHVN P   E  +   F  L+E   G        L AVIPGGSSVP +P
Sbjct: 240 NNGGPKLFSVSGHVNAPNNFEVPLGTPFRALLEMAGG--VKDGRKLKAVIPGGSSVPVVP 297

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
              M    MDYD + + GS LG+ AVIV+   T ++K ++ LS FY HESCGQCTPCREG
Sbjct: 298 GEIMMDVDMDYDSIAKAGSMLGSGAVIVIAEGTCMVKVLYNLSHFYMHESCGQCTPCREG 357

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           TGW+ RV++R++ G  +  +++LL  V+  I G+TICALGDAAA P+Q  +K++R     
Sbjct: 358 TGWLARVIKRILDGQGRAEDLELLDSVAGRIGGKTICALGDAAAMPVQSFLKHYRHEFAY 417

Query: 415 RIDQYHR 421
            I+  HR
Sbjct: 418 MIEHGHR 424


>gi|62261001|gb|AAX77952.1| unknown protein [synthetic construct]
          Length = 459

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 211/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 33  FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 92

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 93  SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 151

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 152 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 211

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 212 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 271

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G   L AVIPGGSS   L A +M    MDY
Sbjct: 272 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 329

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T I++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 330 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 389

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR      I+   R
Sbjct: 390 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 445


>gi|221068607|ref|ZP_03544712.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni
           KF-1]
 gi|220713630|gb|EED68998.1| NADH-quinone oxidoreductase, F subunit [Comamonas testosteroni
           KF-1]
          Length = 454

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 216/421 (51%), Positives = 273/421 (64%), Gaps = 11/421 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I+ +L G    S+ D  +RG +  + K+L K       +D +I  +K SGLRGRGGAGF 
Sbjct: 35  IYADLNGSN-WSIKDYEARGGYQALRKLLGKDGGEGLTQDQVIATLKESGLRGRGGAGFP 93

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       +LV N+DE EPGTCKDRDI+   PH +IEG +IA+FA+G    
Sbjct: 94  TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILMFNPHIVIEGMIIAAFAMGISIG 152

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE     +  +AA++E  A+G LG N     +   +  HHG GAYICGEETALLE
Sbjct: 153 YNYIHGEIFEVYDRFEAALEEARAAGYLGDNILGSSFSFQLHAHHGFGAYICGEETALLE 212

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK
Sbjct: 213 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 272

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG VN P   E  M   F +L+E   G        L AVIPGGSS P LPA  +  
Sbjct: 273 IFSVSGDVNLPGNYEVPMGTPFSKLLELAGG--VRTGRKLKAVIPGGSSSPVLPADIIMD 330

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S D+++ + RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 331 CTMDYDSISKAGSMLGSGAVIVMDDSRDMVECLLRLSYFYSHESCGQCTPCREGTGWLWR 390

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+  G  +  +I+LL  VS NI GRTICALGDAAA P++ +IK+FR   E +I    
Sbjct: 391 VVNRIQHGEGRPEDIELLDSVSVNIMGRTICALGDAAAMPVRAMIKHFRHEFEAKIQNAS 450

Query: 421 R 421
           +
Sbjct: 451 K 451


>gi|328884317|emb|CCA57556.1| NADH-ubiquinone oxidoreductase chain F [Streptomyces venezuelae
           ATCC 10712]
          Length = 449

 Score =  481 bits (1239), Expect = e-134,   Method: Composition-based stats.
 Identities = 198/411 (48%), Positives = 255/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L        +  + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 28  NSWTLETYERHEGYQGLRKALAMSPDALIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDG 86

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG +IA +AI +  AFIY+RGE +     
Sbjct: 87  KPHYLVVNADESEPGTCKDIPLLYANPHSLIEGMIIACYAIRSEHAFIYLRGEVVPVLRR 146

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E YA+G LG N    G +VDI VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 147 LHEAVREAYAAGYLGRNVLGSGLNVDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 206

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL RG  W++  G E + G  L+S+SGHV  P   
Sbjct: 207 FPAVAGLYACPTVVNNVESIASVPAILNRGKEWFTSMGSEKSPGFTLYSLSGHVTSPGQY 266

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 267 EAPLGITLRQLLDMSGGM--RAGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 323

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     +
Sbjct: 324 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRSIENGTGTLAD 383

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 384 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGRG-CPFD 433


>gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 594

 Score =  481 bits (1238), Expect = e-134,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
             + Q+R+   N   +    + + ++R  ++ + K+L     + ++ E+K SGLRGRGG 
Sbjct: 108 FYSKQERVALGNCGYIDADKIEEYIARDGYEALGKVLTSMTPEDVVEEMKTSGLRGRGGG 167

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSF  K       Y++ NADE +PG   DR I+  +PH++IEG +I ++A+GA
Sbjct: 168 GFPTGLKWSFCAKSPGP-KKYVICNADEGDPGAFMDRSILEGDPHSIIEGMMIGAYAMGA 226

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+    + L+ A+D+    GLLG N     +   + V  GAGA++CGEETA
Sbjct: 227 DEGYIYCRAEYPLAIKRLKRAIDQAEEYGLLGENVLGTDFSFSLHVKEGAGAFVCGEETA 286

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A VP+I+RRG +W++  G E ++
Sbjct: 287 LMGSIEGRRGMPRPRPPFPAVSGLWGKPTNINNVETWANVPSIIRRGGAWFASMGTEKSK 346

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V +   VE  M IT  E+I    GGI G      AV  GG S  CL    
Sbjct: 347 GTKVFALTGKVKHTGLVEVPMGITLREIIFDIGGGILGD-KKFKAVQIGGPSGGCLTEEH 405

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + Y+ L + G+ +G+  ++VMD    ++        F + ESCG+C PCREGT  
Sbjct: 406 L-DLPVSYEDLAKAGAIMGSGGMVVMDEDNCMVDVAKFFLEFTQRESCGKCVPCREGTKQ 464

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++  G     ++  L E++  ++  ++C LG  A  P+   ++ FR   E  I 
Sbjct: 465 MLLLLKKICDGEGTMEDLAQLEELAHMVKDMSLCGLGQTAPNPVLTTLRYFRHEYEAHIK 524

Query: 418 QYHRCN 423
               C 
Sbjct: 525 D-RSCP 529


>gi|295676042|ref|YP_003604566.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1002]
 gi|295435885|gb|ADG15055.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. CCGE1002]
          Length = 441

 Score =  481 bits (1238), Expect = e-134,   Method: Composition-based stats.
 Identities = 204/416 (49%), Positives = 269/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWHLEDYVARGGYAQLRRILEEKIAPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH+LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRFNPHSLIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     +  + A++E   +G LG N    G+   +  HHG GAYICGEETALLES+EG
Sbjct: 131 HGEIWEVYKRFEEALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESIEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDMMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G+ ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +   H
Sbjct: 369 IEHGLGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAHKH 424


>gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
          Length = 619

 Score =  481 bits (1238), Expect = e-134,   Method: Composition-based stats.
 Identities = 145/430 (33%), Positives = 234/430 (54%), Gaps = 10/430 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q ++   N   +  +S+ + ++ G ++ +  +L        I+ +K SGLRGRGG 
Sbjct: 110 FYQKQVKVALANCGYIDPESIEEYIATGGYEALGTVLTTLTPQQTIDIIKKSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T +KW  +     +   Y + N DE +PG   DR ++  +PH ++EG +IA++A GA
Sbjct: 170 GFPTYLKWQMVHDNPVE-EKYFICNGDEGDPGAFMDRSLLEGDPHRVLEGMMIAAYATGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+    + ++ A+++   +GLLG N     +  +  V  GAGA++CGEETA
Sbjct: 229 QNGYFYIRAEYPLAIKRIKMAIEKAKETGLLGKNIFGSEFSFEAEVRTGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++S+EG++G P  KPP+PA  GLY  PT VNNVE++  + TI+ +GA W++  G E ++
Sbjct: 289 LIQSIEGQRGNPTPKPPYPAVQGLYKKPTVVNNVETLGNIATIILKGADWFASMGTETSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M IT  ELI    GG+ G      AV  GG S  CL    
Sbjct: 349 GTKVFALTGDIRNTGLVEVPMGITLRELIFDVGGGMIGD-HKFKAVQLGGPSGGCLTTQH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ LKE G+ +G+  VIVM+    ++        F   ESCG+C+PC+ G   
Sbjct: 408 L-DVPIDYESLKERGAMMGSGGVIVMNEEKCMVNVAKFFMDFCVDESCGKCSPCKIGLKQ 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++R+  G  ++ +I+ L  + + I   ++C LG  A  P+   I+ FR   E  I 
Sbjct: 467 MLEILKRIDSGYGKEGDIEELQHLGETISKISLCGLGQTAPNPVLSTIRYFRDEYEAHIR 526

Query: 418 QY----HRCN 423
                   C 
Sbjct: 527 DKSCANKVCP 536


>gi|328952777|ref|YP_004370111.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453101|gb|AEB08930.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 614

 Score =  481 bits (1238), Expect = e-134,   Method: Composition-based stats.
 Identities = 170/411 (41%), Positives = 240/411 (58%), Gaps = 6/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N+  +  + + D +++G +  + + L     + I+ EVKASGLRGRGGAGF TG+KW
Sbjct: 196 LLENVGVIDPEKIDDYLAKGGYQALKQALTGMTPEKIVEEVKASGLRGRGGAGFPTGLKW 255

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF  +       Y++ N DE EPGT KDR I+  +PH L+EG  IA FA+GA   +IY R
Sbjct: 256 SFT-RPLDVPQKYIICNLDEGEPGTIKDRYIVEGDPHKLLEGMAIAGFAVGADKGYIYCR 314

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+   +  L  A+ +  A G LG N    G+  DI V  G G YICGEETAL+ES+EGK
Sbjct: 315 GEYYLCKHRLATAIAQARAKGYLGENLFGRGFSFDIEVRSGFGCYICGEETALIESIEGK 374

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR KPPFP   GL+  PT VNNVE++A +P I+ RG  WY   G  +  GTK++ I 
Sbjct: 375 RGYPRSKPPFPGVAGLWQKPTIVNNVETLAAIPAIITRGGEWYKSLGTADTTGTKIYQII 434

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P  VE    IT  ELI+ + GG+R G         GG+S   +    +    +D+
Sbjct: 435 GHVRTPQIVEVPAGITLRELIDTYGGGMRDGGK-FKMCQTGGASAGIVGPEAL-DVPVDF 492

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
            G+ ++G  LG+  ++VMD S   +     ++VF+ HESCGQCTPCREGT  +++ + R+
Sbjct: 493 -GMAKVGGALGSGTMLVMDESVCAVDFARSVAVFFAHESCGQCTPCREGTRQLLQTLTRI 551

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +G  Q  ++D L  + K +   + C LG  A  P+  L+K FR   E+ I
Sbjct: 552 WEGKGQPGDLDFLERLGKTMMDASFCPLGQTAPAPLFSLLKRFRQEFEDHI 602


>gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score =  481 bits (1238), Expect = e-134,   Method: Composition-based stats.
 Identities = 153/426 (35%), Positives = 237/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q+R +  N   +  +S+ D ++ G +  + K L       ++ EVK + LRGRGGA
Sbjct: 131 FYRNQERNVICNNIKIDSRSIDDYLANGGYSALGKALGSMTPVQVLEEVKKANLRGRGGA 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G+KW    +   D   Y++VNADE +PG   DR ++   PH+++EG ++  +AIGA
Sbjct: 191 GFPAGVKWEG-SRNAPDPVKYVIVNADEGDPGAFMDRALLEGNPHSILEGLILGGYAIGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E++  A+ +    GLLG N    GY   + V+ GAGA++CGE TA
Sbjct: 250 PEGYIYVRHEYPLAVENITLAIQQAQTYGLLGENILGSGYSFRVYVNQGAGAFVCGESTA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG+ G+PR K      VGL+G PT +NNVE+ A VP I+ RGA W++  G E+++
Sbjct: 310 LMTSIEGRAGEPRPKYVRSNVVGLWGHPTVLNNVETWANVPLIINRGADWFTSIGTESSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G +     VE  M I+  +++ K  GGI GG      +  GG S  C+P   
Sbjct: 370 GTKIFSLVGKIANTGLVEVPMGISLRDIVYKIGGGIPGGKKFKA-IQTGGPSGGCIPES- 427

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + +D L   GS +G+  +I MD  T ++        F   ESCG+C PCREG   
Sbjct: 428 LLDLPVGFDELTAAGSMMGSGGMIAMDEDTCMVDTARYFIKFLTDESCGKCVPCREGLRQ 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ R+ +G  ++ +I+LL  +++  +   +CALG +A  P    ++ FR   E  I 
Sbjct: 488 MDNILTRITEGKGREGDIELLEALAETAQEAALCALGKSAPNPFLSTLQYFRDEYEAHIR 547

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 548 E-KRCP 552


>gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 598

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 240/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + ++   +  + K+L E   + +++ +K SGLRGRGG 
Sbjct: 111 FYKKQTRIALRNCGVINPEVIEEYIAYDGYKALGKVLTEMQPEEVVDIMKRSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G+KW F  K   D   Y+  NADE +PG   DR ++  +PH +IE   IA++A GA
Sbjct: 171 GFPAGLKWEFTAKAEGD-EKYVACNADEGDPGAFMDRSVLEGDPHVVIEAMAIAAYAAGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++Y+R E+    E L+ A+ +   +GLLG +    G+D ++ +  GAGA++CGEETA
Sbjct: 230 NRGYVYIRAEYPIAVERLEIAIGQARENGLLGKDIFGTGFDFELEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PPFPA  G++  PT +NNVE+ A VP I+  GA W++  G E ++
Sbjct: 290 LINSIEGKRGMPRPRPPFPAQKGIWNKPTLLNNVETYANVPRIILNGAEWFASIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    VE +M  T  E+I    GGI        AV  GG S  C+ A  
Sbjct: 350 GTKVFALGGKINNTGLVEIAMGTTLKEVIYDIGGGIP-DGKAFKAVQTGGPSGGCITAEH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L E+GS +G+  +IVMD    ++        F   ESCG+CTPCREGT  
Sbjct: 409 L-DTPIDYDNLIELGSMMGSGGMIVMDEDNCMVDIARFFLDFTVEESCGKCTPCREGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++ + +G     ++D L  ++K I+  ++C LG  A  P+   +K FR   +  + 
Sbjct: 468 MLELLDIISEGKGTVADLDKLESLAKTIKSSSLCGLGQTAPNPVLSTLKYFRDEYDAHV- 526

Query: 418 QYHRCN 423
               C 
Sbjct: 527 HDKSCP 532


>gi|121609757|ref|YP_997564.1| NADH-quinone oxidoreductase subunit F [Verminephrobacter eiseniae
           EF01-2]
 gi|121554397|gb|ABM58546.1| NADH-quinone oxidoreductase, F subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 452

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 214/421 (50%), Positives = 278/421 (66%), Gaps = 11/421 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGA 58
           + +I+  L G    +L+D  +RG +  + ++L          D ++  VK SGLRGRGGA
Sbjct: 26  EPQIYAGLNGSN-WTLADYEARGGYQGLRRVLGRDGGQGLTPDQVLAMVKESGLRGRGGA 84

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFMP+       YLV N+DE EPGTCKDRDI++  PH +IEG +IA++A+G 
Sbjct: 85  GFPTGLKWSFMPRSFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMLIAAYAMGI 143

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+ GE  +  E  + A+DE  A+G LG      G+D  +   HG GAYICGEETA
Sbjct: 144 SVGYNYIHGEIFKTYERFEVALDEARAAGYLGHGILGSGFDFQLHASHGFGAYICGEETA 203

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGKKGQPR KPPFP + GLYG PTT+NN E+ A VP I+R GA+ Y   G+ NN 
Sbjct: 204 LLESLEGKKGQPRFKPPFPVSYGLYGKPTTINNTETFAAVPWIMRHGAAAYLECGKPNNG 263

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+SG V  P   E  +   F +L+E   G        L AVIPGGSS P LPA  
Sbjct: 264 GTKIFSVSGDVELPGNYEVPLGTPFAKLLELAGG--VRQGRRLKAVIPGGSSAPVLPAAA 321

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    MDYD + + GS LG+ AVIV+D S D+++++WRLS FY HESCGQCTPCREGTGW
Sbjct: 322 MMACTMDYDAIAKAGSMLGSGAVIVLDDSRDMVESLWRLSYFYMHESCGQCTPCREGTGW 381

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M RV++R+  G  +  +++LL  V+ NI+GRTICALGDAAA P++ +IK+FRP  E  I 
Sbjct: 382 MWRVIDRIRHGQGRAGDLELLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALIG 441

Query: 418 Q 418
           +
Sbjct: 442 K 442


>gi|77919233|ref|YP_357048.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77919440|ref|YP_357255.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545316|gb|ABA88878.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77545523|gb|ABA89085.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 149/425 (35%), Positives = 233/425 (54%), Gaps = 7/425 (1%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
           +  Q RI T   G +  +S+   ++ G +  + K L E     +I  +K SGLRGRGGAG
Sbjct: 1   MATQLRIATRNSGFIDPESVESYIAVGGYQALGKCLSEMKPADVIELMKNSGLRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F  K  SD   ++V NADE +PG   DR ++  +PH+++E   I ++AIG +
Sbjct: 61  FPTGVKWGFAAKYDSDI-KHVVCNADEGDPGAFMDRAVLEGDPHSVLEAMAIGAYAIGGN 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
              IY+R E+      L+ A+++    G+LG N     +  D+ + +GAGA++CGEETAL
Sbjct: 120 KGTIYIRAEYPLAIARLKMAIEQAKEMGVLGDNIMGTDFCFDLELKYGAGAFVCGEETAL 179

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG +G+P  KPPFPA  G +  PT VNNVE++A +P I+ +GA W++  G E ++G
Sbjct: 180 INSMEGNRGEPYTKPPFPAEAGYWNKPTIVNNVETLANIPAIIMKGADWFNKIGTETSKG 239

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F I G +     +E  M  T  E+I    GGI GG +   AV  GG S   L    +
Sbjct: 240 TKVFCICGKIANVGLIEVPMGTTLKEVIYDIGGGIPGGKE-FKAVQTGGPSGGALTYKDL 298

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A +DY+ L    S +G+  +IVMD    ++        F   E+CG+CTPCR G+  +
Sbjct: 299 -DAPIDYENLVARQSMMGSGGMIVMDEEDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRI 357

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +++++  G   + +++ L  +S NI+   +C LG     P+   ++ F       +  
Sbjct: 358 YELLDKITIGQGTEADLEKLRSLSVNIKDTALCGLGQTMPNPVLSTMRVFEDEYRAHVID 417

Query: 419 YHRCN 423
             +C 
Sbjct: 418 -KKCP 421


>gi|120609955|ref|YP_969633.1| NADH-quinone oxidoreductase subunit F [Acidovorax citrulli AAC00-1]
 gi|120588419|gb|ABM31859.1| NADH dehydrogenase subunit F [Acidovorax citrulli AAC00-1]
          Length = 452

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 216/422 (51%), Positives = 277/422 (65%), Gaps = 11/422 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGA 58
           + +I+  L G    S+ D  +RG +  + KIL         +D +I  VK SGLRGRGGA
Sbjct: 26  EPQIYAGLDGTN-WSIKDYEARGGYQALRKILGVDGGEPMTQDQVIATVKESGLRGRGGA 84

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFMP+       YLV N+DE EPGTCKDRDI++  PH +IEG +IA+FA+G 
Sbjct: 85  GFPTGLKWSFMPRSFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMIIAAFAMGI 143

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+ GE  +  E  +AA++E  A+G LG N     +   +   HG GAYICGEETA
Sbjct: 144 SVGYNYIHGEIFQTYERFEAALEEARAAGYLGDNILGSSFSFQLHAAHGFGAYICGEETA 203

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN 
Sbjct: 204 LLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNG 263

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+SG V  P   E  +   F +L+E   G        L AVIPGGSS P LPA  
Sbjct: 264 GTKIFSVSGDVEKPGNYEIPLGTPFSKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASI 321

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW
Sbjct: 322 IMECTMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLLRLSYFYSHESCGQCTPCREGTGW 381

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M RV++R+  G+ ++ ++DLL  V+ NI+GRTICALGDAAA P++ +IK+FRP  E  I 
Sbjct: 382 MWRVIDRIQHGLGREGDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRPEFEALIR 441

Query: 418 QY 419
             
Sbjct: 442 NK 443


>gi|197120282|ref|YP_002140709.1| NADH dehydrogenase I subunit F [Geobacter bemidjiensis Bem]
 gi|197089642|gb|ACH40913.1| NADH dehydrogenase I, F subunit [Geobacter bemidjiensis Bem]
          Length = 593

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 166/426 (38%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
            +  Q R+  T    +  + L   +    +  ++K + E     +I+EVK SGLRGRGG 
Sbjct: 109 FVDQQMRVVMTGCGQIDPERLDAYIEEDGFKAIEKCVKEMKPAEVIDEVKKSGLRGRGGG 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKWSF          YL+ NADE +PG   DR I+  +P+ +IEG +IA++AIG 
Sbjct: 169 GFPTGMKWSFCA-ASPGNHKYLICNADEGDPGAFMDRSILEGDPYCVIEGMMIAAYAIGC 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + LQ A+D CY  G LG N    G+D D+ +  GAGA++CGEETA
Sbjct: 228 DAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFDFDMRIKKGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V  I+ +G  WY+  G +  +
Sbjct: 288 LMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVRHIINKGFEWYASLGTDTTK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V +   VE    ++  ++I K CGGI        AV  GG S  C+PA  
Sbjct: 348 GTKIFAVTGKVKHTGLVEVPAGMSVRDVIYKVCGGIANNRK-FKAVQAGGPSGGCIPAEV 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD +T ++        F K ESCG+C PCR G   
Sbjct: 407 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTKMESCGKCVPCRIGLKA 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++ +G  +  +ID L E+   I+  ++C LG  A  PI   +K FR   E  I 
Sbjct: 466 MLDILEKITEGRGEMADIDTLLEMGATIKKASLCGLGQTAPNPILSTVKYFRNEYEAHII 525

Query: 418 QYHRCN 423
              RC 
Sbjct: 526 D-KRCP 530


>gi|56707216|ref|YP_169112.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669686|ref|YP_666243.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|187930993|ref|YP_001890977.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224456277|ref|ZP_03664750.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371432|ref|ZP_04987433.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874054|ref|ZP_05246764.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603708|emb|CAG44669.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320019|emb|CAL08052.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569671|gb|EDN35325.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           FSC033]
 gi|187711902|gb|ACD30199.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254840053|gb|EET18489.1| NADH dehydrogenase I [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158324|gb|ADA77715.1| NADH dehydrogenase I, F subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 424

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 211/416 (50%), Positives = 265/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G   L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T I++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC LGDAAAWP+Q  I  FR      I+   R
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICGLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419


>gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519]
 gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii]
          Length = 576

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 163/419 (38%), Positives = 241/419 (57%), Gaps = 7/419 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59
           L  Q R+   N   +  +S+ D ++ G ++ +    E K +D +I+E+K SGLRGRGGAG
Sbjct: 90  LEKQPRVVLRNCGVINPESIDDYINIGGYEAIKNCYESKSQDAVIDEIKKSGLRGRGGAG 149

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW    K    +  Y+V NADE +PG   DR ++  +PH LIEG +I  FAIGA 
Sbjct: 150 FPTWFKWDAAKKSA-GQKKYVVCNADEGDPGAFMDRSVLEGDPHNLIEGMMICGFAIGAD 208

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETA 177
              +YVR E+      LQ A+++    G LG N     G +  + +  GAGA++CGEETA
Sbjct: 209 EGIVYVRAEYPLAILRLQKAIEDATERGFLGENIFGIPGRNFSLRIKAGAGAFVCGEETA 268

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PRLKPPFPA  G +  PT +NNVE+ A VP I++ G   ++ +G E +R
Sbjct: 269 LIASLEGERGMPRLKPPFPAQKGYWQLPTNINNVETFANVPWIIKNGGEAFAKYGIETSR 328

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     VE  M I+  E+     GG   G     AV  GG S  C+PA  
Sbjct: 329 GTKVFALTGKVKKGGLVEVPMGISLKEI-IYGVGGGIVGDRPFKAVQLGGPSGGCVPAE- 386

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ + + G+ +G+  ++VMD +T ++        F   ESCG+CT CR GT  
Sbjct: 387 LIDTKVDYESITKTGAIVGSGGMVVMDDTTCMVDMARFFLDFTCKESCGKCTYCRLGTKR 446

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M+ ++ER+  G  ++ +I+LL E+S  ++  ++C LG  A  P+   IK FR   E+ I
Sbjct: 447 MLEILERITAGEGREGDIELLEELSYKVKDGSLCGLGQTAPNPVLTTIKYFRNEYEDHI 505


>gi|77166018|ref|YP_344543.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus oceani ATCC
           19707]
 gi|254436308|ref|ZP_05049814.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani
           AFC27]
 gi|76884332|gb|ABA59013.1| NADH dehydrogenase subunit F [Nitrosococcus oceani ATCC 19707]
 gi|207087998|gb|EDZ65271.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani
           AFC27]
          Length = 427

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 218/425 (51%), Positives = 279/425 (65%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGA 58
           M+      F  L       L   +    ++   +IL  +     II+E+KASGLRGRGGA
Sbjct: 1   MIALNQVCFRTLDLDPPWGLESYLKVKGYEVWKRILREKTPPSKIIDEIKASGLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFMPK  +    Y+V N+DE EPGT KDRDI+R+ PH LIEG  IA +AIGA
Sbjct: 61  GFPTGLKWSFMPKDLAGI-KYIVCNSDEGEPGTFKDRDILRYNPHQLIEGMAIAGYAIGA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y RGEF    E  +AA++E Y +GLLG N    G D D+  H GAGAYICGEETA
Sbjct: 120 AVGYNYTRGEFSEPIERFEAALEEAYQAGLLGKNILASGVDFDLYSHPGAGAYICGEETA 179

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LLESLEGKKG PR KPPFPA  GLYG PTT+NN E++A VP IL +G  W+   G   + 
Sbjct: 180 LLESLEGKKGMPRYKPPFPAGFGLYGRPTTINNTETLASVPVILEKGGQWFLKLGTPTSG 239

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+SGHVN P   E  M I+F +L+E   G      + L AVIPGG+SVP +PA  
Sbjct: 240 GTKIFSVSGHVNRPGNYEVPMGISFKDLLELAGGM--RNGNALKAVIPGGTSVPVMPAEA 297

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A MDYD L + GS LG  +VI+MD +T +++A+ R+S FY+ ESCGQCTPCREGTGW
Sbjct: 298 IMAANMDYDSLAKAGSLLGAGSVIIMDETTCMVRALERISAFYREESCGQCTPCREGTGW 357

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + RV+ R+ +G   + ++D +  V++NI+G TICALGDAAA P+   IK+FR   +  ID
Sbjct: 358 LYRVVHRIEQGQGTQEDLDKVVNVAENIDGHTICALGDAAAAPVISFIKHFRDEFQYHID 417

Query: 418 QYHRC 422
            + RC
Sbjct: 418 -HKRC 421


>gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1]
          Length = 632

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 153/427 (35%), Positives = 232/427 (54%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + + + R  ++ + K+L E   + +I  +  SGLRGRGG 
Sbjct: 137 FYKKQHRVALRNCGVINPECIDEYIGRHGYEALGKVLTEMTPEDVIQTILDSGLRGRGGG 196

Query: 59  GFSTGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TGMKW     +  D    Y+  NADE +PG   DR ++  +PH ++E   IA +AIG
Sbjct: 197 GFPTGMKWKLARNIVPDADQKYVCCNADEGDPGAFMDRSVLEGDPHVVLEAMSIAGYAIG 256

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IYVR E+    E L  A+ +   +G+LG N     +  DI +  GAGA++CGEET
Sbjct: 257 ATQGYIYVRAEYPIAVERLNIAIKQAREAGMLGKNIFGTDFCFDIDLRLGAGAFVCGEET 316

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EG +G+PR +PPFPA  GL+  PT +NNVE+ A +P I+  GA W++  G E +
Sbjct: 317 ALMTSIEGNRGEPRPRPPFPAEKGLFQKPTILNNVETYANIPQIILNGAEWFASMGTEKS 376

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+F++ G +     VE  M  T  E+IE+  GGI        A   GG S  C+ A 
Sbjct: 377 KGTKVFALGGKIKNTGLVEVPMGTTLREVIEEIGGGIP-NGKKFKAAQTGGPSGGCIDAS 435

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                 +DYD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR GT 
Sbjct: 436 N-FDIPIDYDNLIGIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCTPCRIGTK 494

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M  +++++ KG     ++D L E++ +I+  ++C LG  A  P+   ++ FR      +
Sbjct: 495 RMWEILDKITKGKGTLEDLDKLEELAYHIKANSLCGLGQTAPNPVLSTLRCFRDEYIAHV 554

Query: 417 DQYHRCN 423
               +C 
Sbjct: 555 VD-KKCP 560


>gi|186470175|gb|ACC85638.1| HoxF [Lyngbya majuscula CCAP 1446/4]
          Length = 538

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 144/417 (34%), Positives = 240/417 (57%), Gaps = 7/417 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q  +     G +  + + + ++ G + ++   + E   + ++ E+  SGLRGRGGA
Sbjct: 112 FFSRQLLVVREHSGKIDPEKIGEYLAVGGYQSLHHAIYEMTPEEVVAEITKSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+      Y++ NADE +PG   DR ++  +PH ++EG  IA +A+GA
Sbjct: 172 GYPTGLKWATVAKMPPG-QKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAGYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+      LQ A+ +    G+LG+       D  + +  GAGA++CGEETA
Sbjct: 231 NQGYIYVRAEYPLAISRLQKAIQQAKRQGILGTQIFGAPVDFSVDIRVGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S++G +G PR +PP+PA  GL+  PT +NNVE+ A +  I+R+GA W+   G E ++
Sbjct: 291 LIASIDGNRGVPRPRPPYPAVSGLWEKPTLINNVETFANITPIIRKGADWFGSIGTEKSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E  M IT  E++E+  GG+  G   + AV  GG S  C+P   
Sbjct: 351 GTKIFSLTGKIRNTGLIEVPMGITLREIVEEMGGGVPDG--EVKAVQTGGPSGGCIPV-H 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L ++GS +G+  ++VMD+ T +I+       F + ESCG+C PCR GT  
Sbjct: 408 LLDTPVDYESLTKLGSMMGSGGMVVMDQGTSMIQVAQFYMDFCREESCGKCIPCRAGTVQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           M +++ +L+K  A   +++ L E+   ++  ++C LG  A  PI   +  F     E
Sbjct: 468 MYQLLTKLIKKQATAADLEKLKELCSMVKATSLCGLGQTAPNPIVSTLHYFESEYTE 524


>gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 623

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 149/426 (34%), Positives = 235/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  +   +  +S+ + ++ G +  + K +       +  E+  +GLRGRGG 
Sbjct: 137 FYKSQTRLVLEHCGHIDSESIQEYIAYGGYQALAKAMDTMTPSEVCKEISDAGLRGRGGG 196

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG KWS +    SD   Y++ N DE +PG   DR +M  +PH +IEG  IA++  GA
Sbjct: 197 GYPTGKKWSQVLSYASDM-KYVICNGDEGDPGAFMDRSLMEGDPHNIIEGMAIAAYGTGA 255

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L  A+++    GLLG N    G + D+ V+ GAGA++CGE +A
Sbjct: 256 SEGYIYVRAEYPLAVARLNKAIEQAREIGLLGKNILGTGLNFDVHVNQGAGAFVCGEGSA 315

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR+K       GL+  PT +NNVE+ A V  I+  GA+WY  +G + + 
Sbjct: 316 LIASIEGERGMPRVKAKRTVEEGLWKKPTVLNNVETFANVRHIIMNGAAWYQSYGTKGSA 375

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G+VN    +E  M  T  ++I +  GGIRG      AV  GG S  CL    
Sbjct: 376 GTKAFALTGNVNNTGLIEVPMGTTLRKIIFEIGGGIRGN-KKFKAVQIGGPSGGCLTEEH 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L + G+ +G+  +++MD  T +++       F ++ESCG+C PCREGT  
Sbjct: 435 L-DMALDFDSLIDAGAMIGSGGMVIMDEDTCMVEVAKFFMNFTQNESCGKCVPCREGTKI 493

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++V G     +++LL E+S  I    +C LG  AA P+   +K FR      + 
Sbjct: 494 MLNILEKIVSGKGSMEDLNLLEELSDTITNTALCGLGKTAANPVVSSLKYFRDEYLAHVV 553

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 554 E-KRCP 558


>gi|117927481|ref|YP_872032.1| NADH-quinone oxidoreductase, F subunit [Acidothermus cellulolyticus
           11B]
 gi|117647944|gb|ABK52046.1| NADH dehydrogenase subunit F [Acidothermus cellulolyticus 11B]
          Length = 434

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/420 (48%), Positives = 262/420 (62%), Gaps = 7/420 (1%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T  +G     ++      G +  + K L    D ++  VK SGLRGRGGAGF TGMKW
Sbjct: 8   VLTATWGTDRSWTIDAYHQAGGYQALRKALAMSPDAVLQLVKDSGLRGRGGAGFPTGMKW 67

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F+P+    +PHYLVVNADESEPGTCKD  ++   PHTLIEG +IAS+AI AH AFIY+R
Sbjct: 68  GFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLMATPHTLIEGAIIASYAIRAHQAFIYIR 126

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE +     L  AV+E  A+G LG +    G+D+DI VH GAGAYICGEETALLESLEG 
Sbjct: 127 GEVVHVIRRLLRAVEEARAAGYLGRDILGSGFDLDITVHIGAGAYICGEETALLESLEGY 186

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +GQPRL+PPFPA  GLYGCPT +NNVE+IA VP I+R G  WY   G E + G K+FS+S
Sbjct: 187 RGQPRLRPPFPATAGLYGCPTVINNVETIASVPAIVRGGVEWYRSMGTEKSPGFKIFSLS 246

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  + IT  EL++   G        L    PGGSS P   A  +    +D+
Sbjct: 247 GHVARPGQYEAPLGITLRELLDAAGGM--REGHELKFWTPGGSSTPLFTAEHL-DVPLDF 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G  + GS LGT A+ + D +T +++A+ R   FY HESCG+CTPCREGT W  ++ +RL
Sbjct: 304 EGPPQHGSMLGTTALQIFDETTCVVRAVKRWCEFYAHESCGKCTPCREGTFWYAQIFDRL 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            KG+    +I+ L ++S NI GR  CALGD A  P+   I+ FR       +Q   C F 
Sbjct: 364 EKGLGTAEDIETLLDLSDNILGRAFCALGDGATSPVTSSIQYFRDEYIAHYEQGG-CPFD 422


>gi|300245945|gb|ADJ94030.1| putative respiratory-chain NADH dehydrogenase domain [Clostridia
           bacterium enrichment culture clone BF]
          Length = 603

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 155/419 (36%), Positives = 249/419 (59%), Gaps = 6/419 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
            +  Q RI   N   +  +S+   ++   +  + K L+    + +I E+  SGLRGRGG 
Sbjct: 114 FIDKQQRILLKNCGVINPESIDSYLAVDGYKAIQKALKSMAPEQVIAEIDRSGLRGRGGG 173

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFST  KWSF  K    R  Y++ NADE +PG   DR ++   PH+++EG +IA +A+GA
Sbjct: 174 GFSTATKWSFARKSP-GREKYVICNADEGDPGAFMDRSVLESNPHSVLEGMLIAGYAMGA 232

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++Y+R E+    + L+AA+ +  A G LG N     +   I++  GAGA++CGEETA
Sbjct: 233 QTGYVYIRAEYPLAIKRLKAAISQAEAKGFLGGNILGSDFSFRIMIREGAGAFVCGEETA 292

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR++PP+P   GL+G PT++NNVE+ A VP I+  GA  ++ +G E ++
Sbjct: 293 LIMSVEGKRGMPRIRPPYPVEAGLWGKPTSINNVETFANVPWIILNGADAFNRYGTETSK 352

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M IT +E++    GG+  G   L AV  GG S  C+PA  
Sbjct: 353 GTKVFALAGSIARGGLIEVPMGITINEIVFDIGGGLASGRK-LKAVQTGGPSGGCIPAS- 410

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ LK++G+ +G+  +++MD ST ++        F + ESCG+CT CR GT  
Sbjct: 411 LADTPVDYESLKKIGAIMGSGGLLIMDESTCMVDVAKFFLNFTQEESCGKCTFCRVGTRQ 470

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M++++ R+  G  +  +I++L ++ + I   ++C LG +A  P+   IK FR   E  I
Sbjct: 471 MLKILNRITDGEGKDGDIEMLEDLGQKISAGSLCGLGQSAPNPVLTTIKYFRSEYEAHI 529


>gi|294814399|ref|ZP_06773042.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442789|ref|ZP_08217523.1| NADH dehydrogenase I chain F [Streptomyces clavuligerus ATCC 27064]
 gi|294326998|gb|EFG08641.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus
           ATCC 27064]
          Length = 458

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/411 (47%), Positives = 256/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        +  + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 37  ESWTLETYRRHDGYQGLRKALAMAPDDLIAHVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 95

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG +IA +AI ++ AFIY+RGE +     
Sbjct: 96  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACWAIRSNHAFIYLRGEVVPVLRR 155

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E Y +G LG N    G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 156 LHEAVREAYEAGYLGRNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 215

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL RG  W+   G + + G  L+S+SGHV  P   
Sbjct: 216 FPAVAGLYACPTVVNNVESIASVPAILHRGKDWFRSMGSDKSAGFTLYSLSGHVASPGQY 275

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P L    +    +DY+G+   GS 
Sbjct: 276 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPLLTEEHL-DVPLDYEGVAAAGSM 332

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     +
Sbjct: 333 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEDGKGAPAD 392

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   ++ FR   E  +D    C F 
Sbjct: 393 LDKLADIADNINGKSFCALGDGAASPIFSSLRYFRAEYEAHLDGAG-CPFD 442


>gi|29831385|ref|NP_826019.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680]
 gi|29608500|dbj|BAC72554.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 449

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/410 (48%), Positives = 255/410 (62%), Gaps = 6/410 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    +
Sbjct: 30  SWTLDVYRRHEGYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDGK 88

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L
Sbjct: 89  PHYLVVNADESEPGTCKDIPLLFANPHSLIEGMVIACYAIRSSHAFIYLRGEVVPVLRRL 148

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             AV E YA+G LG N    G D++I VH GAGAYICGEETALL+SLEG++GQPRL+PPF
Sbjct: 149 HEAVREAYAAGYLGKNILGSGLDLEITVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 208

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E
Sbjct: 209 PAVAGLYACPTVVNNVESIASVPAILHKGKEWFRSMGSEKSPGFTLYSLSGHVASPGQYE 268

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS L
Sbjct: 269 APLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSML 325

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++
Sbjct: 326 GTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMTDL 385

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 386 DKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGRG-CPFD 434


>gi|294788075|ref|ZP_06753319.1| NADH oxidoreductase (quinone), F subunit [Simonsiella muelleri ATCC
           29453]
 gi|294484368|gb|EFG32051.1| NADH oxidoreductase (quinone), F subunit [Simonsiella muelleri ATCC
           29453]
          Length = 433

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 208/418 (49%), Positives = 264/418 (63%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQG--KSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTG 63
           IF N+        +L++   RG +  + KIL +   +  +I+E+KASGLRGRGGAGF TG
Sbjct: 9   IFENVDTRNPNCWTLAEYQVRGGYQALRKILTEKIPQTDVIDEMKASGLRGRGGAGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSFMP+       Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + 
Sbjct: 69  LKWSFMPRSFPG-AKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAEAGYN 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+ GE     +  + A+ E   +G LG N     +  ++  HHG GAYICGEETALLESL
Sbjct: 128 YIHGEIFEGFQLFEKALQEARDAGFLGKNIMGSEFSFELFAHHGYGAYICGEETALLESL 187

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   ++  G E+  GTKLF
Sbjct: 188 EGKKGQPRFKPPFPASFGLYGKPTTINNTETFASVPFIIRDGGKTFADKGIESAGGTKLF 247

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           SISGHV  P   E ++   F EL+    G    G   L AVIPGGSS P LPA  M    
Sbjct: 248 SISGHVERPGNYEVALGTPFSELLAMAGG--VRGGKKLKAVIPGGSSAPVLPADIMMSCN 305

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MDYD + + GS LG+ AVIVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++
Sbjct: 306 MDYDSIAKAGSMLGSGAVIVMDEDVCMVKALERLSYFYHEESCGQCTPCREGTGWLYRIV 365

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            R+  G  +  ++DLL  V  N+ GRTICAL DAA +P++   K+FR   E  I+   
Sbjct: 366 HRIAMGKGRPEDLDLLDSVGNNMAGRTICALADAAVFPVRSFTKHFREEFEHYIEHGK 423


>gi|126656036|ref|ZP_01727420.1| hydrogenase subunit [Cyanothece sp. CCY0110]
 gi|126622316|gb|EAZ93022.1| hydrogenase subunit [Cyanothece sp. CCY0110]
          Length = 535

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 148/411 (36%), Positives = 248/411 (60%), Gaps = 5/411 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
            Q  +  N   +  +S+ D +SRG +  +  +L E   + +  EV  SGLRGRGG G+ T
Sbjct: 121 QQPIVLENSGKIDPESIDDYISRGGYQQLHHVLLEMTPNDVTQEVTKSGLRGRGGGGYPT 180

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW+ + K+ S +  Y++ NADE +PG   DR ++  +PH ++EG  IA++A+GA+  +
Sbjct: 181 GVKWATVAKM-SGQQKYVICNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGANHGY 239

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+R E+    + L+ A+ +    GL+GS      +D  I +  GAGA++CGEETAL+ S
Sbjct: 240 IYIRAEYPLAIKRLEKAIQQAKRYGLMGSQIFDSPFDFKIDIRVGAGAFVCGEETALIAS 299

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G PR +PP+PA  GL+G PT +NNVE+ A +  I+R G  WY+  G EN++GTK+
Sbjct: 300 VEGKRGTPRPRPPYPAESGLWGDPTLINNVETYANIVPIIREGGDWYASIGTENSKGTKV 359

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G V     +E  M  +  ++IE+  GG+      + AV  GG S  C+PA  +   
Sbjct: 360 FALTGKVENNGLIEVPMGTSIRKIIEEIGGGVLDQG-TVKAVQTGGPSGGCIPA-HLLDT 417

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            ++YD L+++G+ +G+  +IVMD+ T +++       F + ESCG+C PCR GT  +  +
Sbjct: 418 PVEYDSLQKLGTIMGSGGMIVMDQDTSMVEIARFYMDFCQEESCGKCIPCRAGTVQLYDL 477

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + +LV+  A ++++D L  + + ++  ++C LG  A  P+   ++ F+   
Sbjct: 478 LTKLVERKATQQDLDKLEALCQMVKDTSLCGLGMTAPNPVISTLQYFQDEY 528


>gi|227822748|ref|YP_002826720.1| NADH dehydrogenase I chain F1 [Sinorhizobium fredii NGR234]
 gi|227341749|gb|ACP25967.1| NADH dehydrogenase I chain F1 [Sinorhizobium fredii NGR234]
          Length = 420

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 191/423 (45%), Positives = 257/423 (60%), Gaps = 7/423 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +  N+    G  L+   + G +  + K+L E   D ++  VK S LRGRGGAGF TG
Sbjct: 3   EPVLLKNIDAPDGHVLATYEAGGGYQALAKVLREHTPDEVVELVKQSNLRGRGGAGFPTG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKW F+PK  SD+P YL  NADE EPGT KDR IM  +PH L+EG  ++++AIGA  A++
Sbjct: 63  MKWGFVPKQ-SDKPKYLCCNADEGEPGTFKDRIIMERDPHQLVEGLAVSAYAIGAETAYV 121

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVRGE+++    L+ A+ E    G LG+      +   I +H GAGAYICGEETA+LESL
Sbjct: 122 YVRGEYVKAIRRLEQAIAEARDKGYLGAGILGSDFSFAIHIHCGAGAYICGEETAMLESL 181

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG  W+   G + + G KL+
Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGPHWFRAIGPDKSPGPKLY 241

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG V  P   E  M I   EL+E   G        + AVIPGG S P +P G +    
Sbjct: 242 CVSGQVRKPGLYELPMGIPLRELVEHAGG--PLPGRRIKAVIPGGVSAPVIPKGGL-DVG 298

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W ++V+
Sbjct: 299 MDFDSLAAAGSMLGSAGVIVVDDSTCMVKVAARIVEFFHHESCGKCTPCREGLNWAVKVL 358

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+  G     +++ L ++ K I G T CALGD AA  ++  + +FR      I++  RC
Sbjct: 359 RRIEAGEGAPGDLEQLEKLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFAAHIEE-RRC 417

Query: 423 NFQ 425
            F 
Sbjct: 418 PFH 420


>gi|320449685|ref|YP_004201781.1| NADH-quinone oxidoreductase subunit F [Thermus scotoductus SA-01]
 gi|320149854|gb|ADW21232.1| NADH-quinone oxidoreductase, subunit F [Thermus scotoductus SA-01]
          Length = 437

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 192/426 (45%), Positives = 262/426 (61%), Gaps = 13/426 (3%)

Query: 6   DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
            R    LY   G     +L   +  G ++   ++L EK  + +I EVK SGLRGRGGAGF
Sbjct: 11  PRFEKTLYAHVGQEGSWTLDYYLKHGGYETAKRVLKEKTPEEVIEEVKRSGLRGRGGAGF 70

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    + HYL+ NADESEPG+ KDR IM   PH L+EG ++A +AI A  
Sbjct: 71  PTGVKWSFMPKD--GKQHYLICNADESEPGSFKDRYIMEDVPHLLLEGMILAGYAIRATV 128

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVRGE+ +  + L+AA+ E    G LG N    G+  D+ VH GAGAYICGEETAL+
Sbjct: 129 GYIYVRGEYRKAADRLEAAIREARTRGYLGENLFGSGFSFDVHVHRGAGAYICGEETALM 188

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG +  PRLKPPFPA  GL+G PTT+NNVE++A V  IL RGA W++  G E ++G 
Sbjct: 189 NSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPILERGADWFASMGTEQSKGM 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQM 298
           KL+ ISG V  P   E  M  TF ELI    GG     + + A+IPGGSS P LP   ++
Sbjct: 249 KLYQISGPVRRPGVYELPMGTTFRELIYDWAGGP---LEPIQALIPGGSSTPPLPFTDEV 305

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-W 357
               M Y+ L+  GS LGT  VI++     ++ A+W ++ FY HESCG+CTPCREG   +
Sbjct: 306 LDTPMSYEHLQAQGSMLGTGGVILIPERVSMVDAMWNVTRFYAHESCGKCTPCREGVAGF 365

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +  ++  G  ++++++ L  +   IEGR+ C L DAA WP++G +K+F+      + 
Sbjct: 366 MVNLFAKIGSGEGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLKHFKDQYLALVR 425

Query: 418 QYHRCN 423
           +     
Sbjct: 426 EKKPVP 431


>gi|254391142|ref|ZP_05006349.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704836|gb|EDY50648.1| NADH-quinone oxidoreductase subunit F [Streptomyces clavuligerus
           ATCC 27064]
          Length = 456

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/411 (47%), Positives = 256/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        +  + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 35  ESWTLETYRRHDGYQGLRKALAMAPDDLIAHVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 93

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG +IA +AI ++ AFIY+RGE +     
Sbjct: 94  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACWAIRSNHAFIYLRGEVVPVLRR 153

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E Y +G LG N    G D+DI VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 154 LHEAVREAYEAGYLGRNILGSGLDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 213

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL RG  W+   G + + G  L+S+SGHV  P   
Sbjct: 214 FPAVAGLYACPTVVNNVESIASVPAILHRGKDWFRSMGSDKSAGFTLYSLSGHVASPGQY 273

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P L    +    +DY+G+   GS 
Sbjct: 274 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPLLTEEHL-DVPLDYEGVAAAGSM 330

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     +
Sbjct: 331 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEDGKGAPAD 390

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   ++ FR   E  +D    C F 
Sbjct: 391 LDKLADIADNINGKSFCALGDGAASPIFSSLRYFRAEYEAHLDGAG-CPFD 440


>gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 241/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   ++  ++ + ++R  +  + K L E   + II+EVK S LRGRGG 
Sbjct: 114 FYKYQQRIALRNCGLIEPHNIREYIARDGYQALGKALTEMTPEEIIDEVKTSKLRGRGGG 173

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K     P +++ NADE +PG   DR I+  +PH++IEG  I ++ IGA
Sbjct: 174 GFPTGVKWELT-KSAEGSPKFIICNADEGDPGAFMDRSIVEGDPHSVIEGLAIGAYVIGA 232

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++YVR E+    + L+ A++     G+LG +    G+D ++ +  GAGA++CGEETA
Sbjct: 233 NQGYVYVRAEYPLAVDRLEKAIESARELGVLGEDIFGSGFDFNVEIRVGAGAFVCGEETA 292

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S++G +G P  KPP+PAN GL+  PT +NNVE++A +P I+  G  W+S  G E + 
Sbjct: 293 LIHSVQGDRGDPHGKPPYPANDGLWDQPTVINNVETLANIPQIILNGGDWFSHIGTEEST 352

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G ++    +E  M  T  E+I    GGI    +   A   GG S  CLP  +
Sbjct: 353 GTKVFALAGDIHNTGLIEVPMGTTLREVIFNLGGGIPDDKE-FKAAQTGGPSGGCLPREK 411

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MDYD L E+GS +G+  +IVMD  T ++        F + E+CG+CTP R GT  
Sbjct: 412 L-DISMDYDSLLEVGSMMGSGGLIVMDEDTCMVDVARFYLDFTQDEACGKCTPGRVGTKR 470

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ R+V G A++  +D L  +   I+   +C LG +A  PI   ++ FR   E  + 
Sbjct: 471 LLEMLNRIVSGEAEENILDKLEALCHEIKKTALCGLGQSAPNPILSTLEYFRDEYEAHVF 530

Query: 418 QYHRCN 423
               C 
Sbjct: 531 D-KYCP 535


>gi|320009199|gb|ADW04049.1| NADH-quinone oxidoreductase, F subunit [Streptomyces flavogriseus
           ATCC 33331]
          Length = 457

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 196/411 (47%), Positives = 257/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 30  ESWTLDTYHRHDGYEGLRKALAMEPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 88

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 89  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 148

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E Y +G LG+N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 149 LHEAVREAYEAGYLGTNVLGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 208

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   
Sbjct: 209 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQY 268

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 269 EAPLGITLRQLLDMSGG--IREGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 325

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  Q  +
Sbjct: 326 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMAD 385

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 386 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHIT-GKGCPFD 435


>gi|154287522|ref|XP_001544556.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150408197|gb|EDN03738.1| NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 419

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 253/390 (64%), Positives = 306/390 (78%), Gaps = 4/390 (1%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR---PHYLVVNADESEPGTC 92
           L      II+E+KASGLRGRGGAGF +G+KWSFM     D+   P YLVVNADE EPGTC
Sbjct: 3   LRTDDFQIISEIKASGLRGRGGAGFPSGLKWSFMNFKDWDKDNKPRYLVVNADEGEPGTC 62

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
           KDR+IMR +PH LIEGC++A  A+ A  A+IY+RGEF  E   LQ A+ E Y +GL+G N
Sbjct: 63  KDREIMRKDPHKLIEGCLVAGRAMNATAAYIYIRGEFYHEATVLQRAIQEAYQAGLIGKN 122

Query: 153 S-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
           +   GYD D+ +H G GAYICGEET+L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NV
Sbjct: 123 ACGSGYDFDVYLHRGMGAYICGEETSLIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNV 182

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++AV PTI RRG  W++ FGRE N+GTKLF ISGHVN PCTVEE MSI   ELIE+HCG
Sbjct: 183 ETVAVAPTICRRGGKWFASFGRERNQGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCG 242

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G+RGGWDNLLAVIPGGSS P LP       +MD+D LK+  SGLGTAAVIVMD+STD++ 
Sbjct: 243 GVRGGWDNLLAVIPGGSSTPILPKHICDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVA 302

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           AI RLS FYKHESCGQCTPCREG+ W M++M+R  +G A++REID+L E++K +EG TIC
Sbjct: 303 AISRLSAFYKHESCGQCTPCREGSKWTMQMMQRFERGQAREREIDMLQELTKQVEGHTIC 362

Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ALG+A AWPIQGLI++FRP +E RI +Y +
Sbjct: 363 ALGEAFAWPIQGLIRHFRPELEARIRKYEQ 392


>gi|253996968|ref|YP_003049032.1| NADH-quinone oxidoreductase subunit F [Methylotenera mobilis JLW8]
 gi|253983647|gb|ACT48505.1| NADH-quinone oxidoreductase, F subunit [Methylotenera mobilis JLW8]
          Length = 438

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 212/423 (50%), Positives = 274/423 (64%), Gaps = 7/423 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGA 58
           LT Q  +    L      SL   +  G +  + +++ +      II+EVKASGLRGRGGA
Sbjct: 13  LTGQTLVTLRTLTEENPASLETYLKLGGYAALKRVVTEKVKPTDIISEVKASGLRGRGGA 72

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFMP+   D   YLV N DE EPGT KDRDI+R+ PH LIEG  IA++ +GA
Sbjct: 73  GFPTGLKWSFMPRYF-DGVKYLVCNTDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGA 131

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              + Y+ GE  ++ E  +AA+ E  A+G LG +     +  D+   HG GAYICGEETA
Sbjct: 132 RVGYNYIHGEIWQDYEIFEAALHEAKAAGYLGEDLFGTNFSFDLYAVHGYGAYICGEETA 191

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGKKGQPR KPPFPA+ G++G PT VNN ES   +P I++ G   ++  G  N+ 
Sbjct: 192 LIESIEGKKGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWIMQNGGKAFADLGVANSG 251

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLFSISGHV  P   E +M + F EL+    G  +G    L AVIPGG S   +PA  
Sbjct: 252 GTKLFSISGHVEKPGNYEVNMGMPFTELLALAGGIWKG--RQLKAVIPGGPSTAVMPASA 309

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           + GA MDYDGL +  S LG  ++IVMD +T ++KA+ RLS F+  ESCGQCTPCREGTGW
Sbjct: 310 ILGATMDYDGLSKARSSLGAGSMIVMDDTTCMVKALHRLSYFFYEESCGQCTPCREGTGW 369

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + RV++R+VKG  +  ++DLL +VS NI GRTICALG+AAA P+   IK+FRP  E  I 
Sbjct: 370 VYRVIDRIVKGQGKMEDLDLLTDVSNNIAGRTICALGEAAATPVLSFIKHFRPEFEYYIQ 429

Query: 418 QYH 420
              
Sbjct: 430 HGK 432


>gi|254382438|ref|ZP_04997797.1| NADH-quinone oxidoreductase subunit F [Streptomyces sp. Mg1]
 gi|194341342|gb|EDX22308.1| NADH-quinone oxidoreductase subunit F [Streptomyces sp. Mg1]
          Length = 448

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/411 (47%), Positives = 254/411 (61%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 29  QSWTLETYRRHEGYEGLRKALAMTPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 87

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           + HYLVVNADESEPGTCKD  ++   PH+LIEG +IA +AI +  AFIY+RGE +     
Sbjct: 88  KSHYLVVNADESEPGTCKDIPLLFANPHSLIEGMIIACYAIRSEHAFIYLRGETVPVLRR 147

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E Y +G LG++    G  +DI VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 148 LHEAVREAYEAGYLGTDILGSGLKLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 207

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P   
Sbjct: 208 FPAVEGLYACPTVVNNVESIASVPAILNRGKDWFKAMGTEKSPGFTLYSLSGHVVGPGQY 267

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 268 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 324

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     +
Sbjct: 325 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSD 384

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 385 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHIT-GKGCPFD 434


>gi|78067041|ref|YP_369810.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. 383]
 gi|254247662|ref|ZP_04940983.1| NADH:ubiquinone oxidoreductase [Burkholderia cenocepacia PC184]
 gi|77967786|gb|ABB09166.1| NADH dehydrogenase subunit F [Burkholderia sp. 383]
 gi|124872438|gb|EAY64154.1| NADH:ubiquinone oxidoreductase [Burkholderia cenocepacia PC184]
          Length = 436

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|94309877|ref|YP_583087.1| NADH-quinone oxidoreductase, F subunit [Cupriavidus metallidurans
           CH34]
 gi|93353729|gb|ABF07818.1| NADH:ubiquinone oxidoreductase, chain F [Cupriavidus metallidurans
           CH34]
          Length = 431

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/418 (49%), Positives = 272/418 (65%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D + RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLDGKN-WHLEDYVKRGGYKQLRRILEEKVTPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N DE EPGT KDRDI+R+ PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRAFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE   E +  + A++E   +G LG N    G++  +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIWNEYKIFEEALEEARRAGFLGDNILGSGFNFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+FS+
Sbjct: 191 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLEVGPENYLKMGKPNNGGSKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M  + MD
Sbjct: 251 SGDVERPGNYEIPLGTPFATLLELAGGM--RGGKKIKAVIPGGSSAPVVPGDLMMASDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRMVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  + ++ +C
Sbjct: 369 IEHGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHV-EHKQC 425


>gi|29654734|ref|NP_820426.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA
           493]
 gi|161830422|ref|YP_001597288.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA
           331]
 gi|29542002|gb|AAO90940.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii RSA 493]
 gi|161762289|gb|ABX77931.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA
           331]
          Length = 422

 Score =  479 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 206/415 (49%), Positives = 275/415 (66%), Gaps = 6/415 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  L+  +  +L    S G +  + KIL++    + IINE+K S LRGRGGAGF TG+KW
Sbjct: 8   YRTLHLEKPWTLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKW 67

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P+       Y++ N+DESEPGT KDRDI+R  PH ++EG  IA + +GA   + ++R
Sbjct: 68  SFIPRDKPG-EKYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLR 126

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF    +  + A+ +   +GL+G N    G D++I  H  AGAYICGEETAL+ SLEGK
Sbjct: 127 GEFWEPFDRCEQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGK 186

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR KPPFPAN GLY  P+ +NN E+ A VP IL +G  W++  G   N GTK+FS+S
Sbjct: 187 RGWPRFKPPFPANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVS 246

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  + I F +L+    GG+R G + L AVIPGGSS+P LPA  M  AIM +
Sbjct: 247 GHVAKPGNYEVPLGIPFADLL-ALAGGMREGSE-LKAVIPGGSSMPVLPAEVMMKAIMSF 304

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DGL E GS LG+  V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+
Sbjct: 305 DGLVEAGSMLGSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRI 364

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            KG   KR+I+ L  V+K IEGRTICA G+AAAWP+ G++K+F    E  +    
Sbjct: 365 EKGEGTKRDIEQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTHGK 419


>gi|170733604|ref|YP_001765551.1| NADH-quinone oxidoreductase,subunit F [Burkholderia cenocepacia
           MC0-3]
 gi|169816846|gb|ACA91429.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 436

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKRIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|167569427|ref|ZP_02362301.1| NADH-quinone oxidoreductase, F subunit [Burkholderia oklahomensis
           C6786]
          Length = 436

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 204/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLTGEN-WHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA++E   +G LG N    G+   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALEEARRAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|134301251|ref|YP_001121219.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049028|gb|ABO46099.1| NADH dehydrogenase I subunit F [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 424

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 211/416 (50%), Positives = 266/416 (63%), Gaps = 6/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L+  +  SL   +S G +   +KIL +    + II E+K SGLRGRGGAGF TG+KW
Sbjct: 7   FRTLHLDKPYSLESYLSVGGYSYWNKILTEKIPPEQIIEELKISGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DE EPGTCKDR+I+R+ PH LIEG  IA + +GA   + Y R
Sbjct: 67  SFMPRNAPG-QKYVVCNSDEGEPGTCKDREILRNNPHQLIEGIAIAGYVVGATAGYNYTR 125

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ E Y +GLLG+N K  G   D+    GAGAYICGEETALL SLEGK
Sbjct: 126 GEFYEPIARFEDALIEAYQAGLLGTNIKSSGISFDLYSAIGAGAYICGEETALLNSLEGK 185

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KG+PR KPPFPA  GLY  PT +NN E+ A VP IL+ G  W+   G E + GTKLF +S
Sbjct: 186 KGRPRFKPPFPAFKGLYDKPTNINNTETYASVPAILQYGGEWFKKLGTEKSGGTKLFCVS 245

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV     VE  + + F EL++  CGG+R G   L AVIPGGSS   L A +M    MDY
Sbjct: 246 GHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK-LKAVIPGGSSSKILTADEMMAVTMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +   GS LG+ AV+V+D +T I++ + RL+ FY  ESCGQCTPCREGTGW+ R + R+
Sbjct: 304 ESIAAAGSMLGSGAVVVLDETTCIVRTLARLADFYYEESCGQCTPCREGTGWLARTLHRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V G  +  +ID L  V+ NIEG TIC+LGDAAAWP+Q  I  FR      I+   R
Sbjct: 364 VAGEGRPEDIDTLVRVATNIEGNTICSLGDAAAWPVQSYIDKFRHEFVYMIENNGR 419


>gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 596

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + + ++   +  + K+L E   + +I+ +K SGLRGRGG 
Sbjct: 111 FYKKQKRVALRNCGIINPEVIEEYIAFDGYKALGKVLTEMKPEEVIDIIKRSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF +G+KW F  K   D   Y+  NADE +PG   DR ++  +PH +IE   IA++A GA
Sbjct: 171 GFPSGLKWEFTAKAEGD-EKYVACNADEGDPGAFMDRSVLEGDPHVIIEAMAIAAYAAGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++Y+R E+    E L+ A+ +   +GLLG N     +D ++ +  GAGA++CGEETA
Sbjct: 230 NRGYVYIRAEYPIAVERLEIAIKQARENGLLGKNIFGTEFDFELEIRLGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PPFPA+ G++  PT +NNVE+ A VP I+  GA W++  G E ++
Sbjct: 290 LINSIEGKRGMPRPRPPFPAHKGIWNKPTLLNNVETYANVPQIILNGAEWFASMGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N    +E +M  T  E+I    GGI  G     AV  GG S  C+ A  
Sbjct: 350 GTKVFALGGKINNTGLLEVAMGTTLREVIYDVGGGIPNG-KAFKAVQTGGPSGGCITAEH 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD    ++        F   ESCG+C PCR GT  
Sbjct: 409 L-DTPIDYDNLIALGSMMGSGGMIVMDEDNCMVDIARFFLDFTVEESCGKCPPCRIGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++++ +G  +  ++D L  ++++I+  ++C LG  A  P+   +K FR   E  + 
Sbjct: 468 MLELLDKITEGKGELEDLDKLERLAESIKVASLCGLGQTAPNPVLSTLKYFRDEYEAHVK 527

Query: 418 QYHRCN 423
           +   C 
Sbjct: 528 E-KSCP 532


>gi|254251866|ref|ZP_04945184.1| NADH dehydrogenase [Burkholderia dolosa AUO158]
 gi|124894475|gb|EAY68355.1| NADH dehydrogenase [Burkholderia dolosa AUO158]
          Length = 436

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 206/416 (49%), Positives = 268/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVVPGDVMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + ++GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|118617951|ref|YP_906283.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone
           oxidoreductase chain F) [Mycobacterium ulcerans Agy99]
 gi|118570061|gb|ABL04812.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone
           oxidoreductase chain F) [Mycobacterium ulcerans Agy99]
          Length = 448

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 208/420 (49%), Positives = 272/420 (64%), Gaps = 10/420 (2%)

Query: 12  LYGLQG--KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            Y       +L+       +  ++K L  G D +I  VK SGLRGRGGAGFSTG KWSF+
Sbjct: 14  RYWDDPESWTLATYRRHDGYRALEKALAMGPDAVIGTVKDSGLRGRGGAGFSTGTKWSFI 73

Query: 70  PKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           P+  +     PHYLVVNADESEPGTCKD  +M   PH L+EG +IA++AI A  AFIYVR
Sbjct: 74  PQGDAGPAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRASHAFIYVR 133

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE +     LQ AV E YA+GLLG N    G+D++++VH GAGAYICGEETALL+SLEG+
Sbjct: 134 GEVLPVLRRLQNAVAEAYAAGLLGRNINGSGFDLELVVHAGAGAYICGEETALLDSLEGR 193

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +GQPRL+PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+S
Sbjct: 194 RGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILNGVDWFRSMGSEKSPGFTLYSLS 253

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  + IT  EL+  + GGIR G   L    PGGSS P L    +    +DY
Sbjct: 254 GHVTRPGQYEAPLGITLRELL-DYAGGIRAG-HQLKFWTPGGSSTPLLTDEHL-DVPLDY 310

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G+  +GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++  RL
Sbjct: 311 EGVGGVGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYARL 370

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             G   + +ID L ++S +I G++ CALGD AA P+   IK+F+       +Q   C F 
Sbjct: 371 ETGKGTREDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFQNEYIAHAEQGG-CPFD 429


>gi|257452669|ref|ZP_05617968.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
          Length = 580

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 153/422 (36%), Positives = 234/422 (55%), Gaps = 6/422 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
             + RI  N   +  +S+ D + +  +  + K L E     +I E++ SGLRGRGG GF 
Sbjct: 98  KQERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFP 157

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K       Y+V NADE +PG   DR I+  +P+ +IEG +IA +AIGA+ A
Sbjct: 158 TGIKWEIASKQE-GNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHA 216

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IY+R E+      LQ A+++    G LG +     +  D+ +  GAGA++CGEETAL++
Sbjct: 217 LIYIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVNLKFGAGAFVCGEETALIQ 276

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S++G++G+P+ KPP+PA  G  G PT VNNVE++  VP I++ G+ W+   G E + GTK
Sbjct: 277 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 336

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G VN    VE  M  T  E+I +  GGI+       AV  GG S  CL    +  
Sbjct: 337 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIK-NGKRFKAVQTGGPSGGCLTNKDL-D 394

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L   GS +G+  +I+MD    ++        F   ESCG+CTPCR G   +  
Sbjct: 395 ISIDFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 454

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ +G     ++ LL E+S  I+  ++C LG  +  P+   +K FR    + I+   
Sbjct: 455 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFREEYIQHIED-K 513

Query: 421 RC 422
            C
Sbjct: 514 TC 515


>gi|326777367|ref|ZP_08236632.1| NADH-quinone oxidoreductase, F subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|326657700|gb|EGE42546.1| NADH-quinone oxidoreductase, F subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 459

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/411 (47%), Positives = 256/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 30  DSWTLDTYRRHEGYEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 88

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 89  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 148

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E Y +G LG+N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 149 LHEAVREAYEAGYLGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 208

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   
Sbjct: 209 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQY 268

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 269 EAPLGITLRQLLDMSGGM--RAGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSM 325

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  +
Sbjct: 326 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMAD 385

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 386 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHIT-GKGCPFD 435


>gi|39997815|ref|NP_953766.1| NAD-reducing hydrogenase subunit alpha [Geobacter sulfurreducens
           PCA]
 gi|39984707|gb|AAR36093.1| NAD-reducing hydrogenase, alpha subunit [Geobacter sulfurreducens
           PCA]
 gi|298506753|gb|ADI85476.1| bidirectional NAD-reducing hydrogenase, diaphorase subunit
           [Geobacter sulfurreducens KN400]
          Length = 570

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 155/425 (36%), Positives = 241/425 (56%), Gaps = 7/425 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
            T Q +I   N   +  + + + ++ G +D +   L E   + +  E+ ASGLRGRGGAG
Sbjct: 120 FTRQMKIVLANCGSIDPERIEEYVATGGYDALAHALHEMTPEDVCREISASGLRGRGGAG 179

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           +  G+KW+   K   +   Y+V N DE +PG   DR +M  +PH ++EG  IA +AIGA 
Sbjct: 180 YPAGVKWNLARKAPGE-RKYVVANGDEGDPGAYMDRSVMESDPHRILEGMAIAGYAIGAD 238

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVRGE+      L+AA+ +    GLLGS      +   I +  GAGA++CGEET+L
Sbjct: 239 QGYIYVRGEYYLAGRRLEAAIRDAERKGLLGSRVLGSNFSFRIDIRTGAGAFVCGEETSL 298

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+ G++GQP  +PP+PA  GL+GCPT +NNVE++A VP I+ RGA+WY+G G   + G
Sbjct: 299 MASIMGRRGQPWHRPPYPAQRGLWGCPTLINNVETLATVPAIIGRGATWYAGIGSTRSPG 358

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+++++G V     +E  M  T  E++    GGI GG     A   GG S  C+PA  +
Sbjct: 359 TKVYALAGQVETAGLIEVPMGTTLREVVFDIGGGIPGG-KRFKAAQSGGPSGGCIPAEHL 417

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ ++ +G+ +G+  +I+MD ++ +         F + ESCG+C PCR G+  M
Sbjct: 418 -DTPLDYESMERIGTIMGSGGLIIMDETSCMPDVASFFLDFCRDESCGKCIPCRVGSMEM 476

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R++ R+  G A   ++  L E+   +   ++C LG  A  P+   ++ FR   E  I +
Sbjct: 477 HRLLRRITSGTAWPDDLRRLEELCDLMGATSLCGLGQTAPNPVVSTLRYFRHEYEAHIRE 536

Query: 419 YHRCN 423
             RC 
Sbjct: 537 -RRCP 540


>gi|124515811|gb|EAY57320.1| NADH dehydrogenase (quinone) [Leptospirillum rubarum]
          Length = 617

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 148/427 (34%), Positives = 230/427 (53%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +I T   G +   S+ D ++   +  + K L     + ++ +V  SGLRGRGG 
Sbjct: 131 FFKGQVKIVTKRCGMIDPLSIEDYIAMDGYKALKKALTSMTPEEVVEQVTKSGLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG- 117
           GF TG+KWS   K       Y+V NADE +PG   DR ++  +PH ++EG +IAS+A+G 
Sbjct: 191 GFPTGLKWSLTQKSPGP-EKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMIIASYAVGG 249

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IY R E+      L+ A+++  A   LG N    G   DI +  GAGAY+CGEET
Sbjct: 250 AKKGYIYCRAEYPLAIRHLRKAIEDAKAHNFLGENILGTGLCFDIEIKEGAGAYVCGEET 309

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+ G++G P  KPPFPA  G++G P+ +NNVE++  +  I+  G  WY+ +G E  
Sbjct: 310 ALLASIMGERGMPWPKPPFPAQKGVWGKPSVINNVETLGNIGHIILNGGDWYASYGSEKT 369

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK F+++G +     +E        E+I    GG+        A   GG S  C+P  
Sbjct: 370 KGTKTFALTGSIKNSGLIEVPAGTPLREIIYSIGGGMVEKKIPFKAAQLGGPSGGCIPVD 429

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D++ +   G+ +G+  ++VMD +  I+        F + ESCG+CTPCR G+ 
Sbjct: 430 GL-DTPVDFENVVAAGAIMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSK 488

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ R+ +G  Q+ ++D L  +S  ++  ++C LG AA  P+   I+ FR   E  I
Sbjct: 489 IMLDILTRITEGKGQEGDLDELVRLSMYVKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI 548

Query: 417 DQYHRCN 423
               RC 
Sbjct: 549 RD-KRCP 554


>gi|282860724|ref|ZP_06269790.1| NADH-quinone oxidoreductase, F subunit [Streptomyces sp. ACTE]
 gi|282564460|gb|EFB69996.1| NADH-quinone oxidoreductase, F subunit [Streptomyces sp. ACTE]
          Length = 457

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/411 (47%), Positives = 257/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 30  EPWTLETYRRHDGYEGLRKALAMSPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 88

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 89  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 148

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E Y +G LG+N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 149 LHEAVREAYEAGYLGANILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 208

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P   
Sbjct: 209 FPAVAGLYACPTVVNNVESIASVPAILNRGKDWFKSMGSEKSPGFTLYSLSGHVAGPGQY 268

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 269 EAPLGITLRQLLDMSGGM--RAGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 325

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  +
Sbjct: 326 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMAD 385

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   E+ +     C F 
Sbjct: 386 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHVT-GKGCPFD 435


>gi|182436772|ref|YP_001824491.1| putative NADH dehydrogenase chain F [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465288|dbj|BAG19808.1| putative NADH dehydrogenase chain F [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 460

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/411 (47%), Positives = 256/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 31  DSWTLDTYRRHEGYEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 89

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 90  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 149

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E Y +G LG+N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 150 LHEAVREAYEAGYLGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 209

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   
Sbjct: 210 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQY 269

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 270 EAPLGITLRQLLDMSGGM--RAGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSM 326

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  +
Sbjct: 327 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMAD 386

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 387 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHIT-GKGCPFD 436


>gi|171316308|ref|ZP_02905529.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           MEX-5]
 gi|171098534|gb|EDT43335.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           MEX-5]
          Length = 436

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGRKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F [Herbaspirillum seropedicae SmR1]
 gi|300073885|gb|ADJ63284.1| NADH dehydrogenase I (chain F) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 210/416 (50%), Positives = 269/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65
           I  +L G     L D + RG ++++ +IL +    + +I ++KASGLRGRGGAGF TG+K
Sbjct: 13  ILADLNGEN-WHLEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N DE EPGT KDRDI+R+ PH LIEG +I  +A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     E  + A++E  A+G LG N    G+   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFSAYERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I + G   Y+  G+ NN GTK+FSI
Sbjct: 191 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKPNNGGTKIFSI 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +    M    MD
Sbjct: 251 SGDVERPGNYEIPLGTPFSTLLELAGGM--RGGKKIKAVIPGGSSAPVIRGDVMMDTTMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGWM R++ER
Sbjct: 309 YDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTGWMYRMVER 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  +  ++D+L  V+ NI+GRTICALGDAAA P++  +KNFR   E  I+  H
Sbjct: 369 IENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHIEHKH 424


>gi|107023183|ref|YP_621510.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia AU
           1054]
 gi|116690265|ref|YP_835888.1| NADH-quinone oxidoreductase, F subunit [Burkholderia cenocepacia
           HI2424]
 gi|105893372|gb|ABF76537.1| NADH dehydrogenase subunit F [Burkholderia cenocepacia AU 1054]
 gi|116648354|gb|ABK08995.1| NADH dehydrogenase subunit F [Burkholderia cenocepacia HI2424]
          Length = 436

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGTEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|115352333|ref|YP_774172.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           AMMD]
 gi|115282321|gb|ABI87838.1| NADH dehydrogenase subunit F [Burkholderia ambifaria AMMD]
          Length = 436

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGARKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|222110091|ref|YP_002552355.1| NADH-quinone oxidoreductase subunit F [Acidovorax ebreus TPSY]
 gi|221729535|gb|ACM32355.1| NADH-quinone oxidoreductase, F subunit [Acidovorax ebreus TPSY]
          Length = 453

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 215/420 (51%), Positives = 275/420 (65%), Gaps = 11/420 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I+  L G    SL D  +RG +  + K+L K       +D +I  +K SGLRGRGGAGF 
Sbjct: 29  IYAGLNGSN-WSLKDYEARGGYQALRKLLGKDGGEGLTQDQVIATMKESGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G    
Sbjct: 88  TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISVG 146

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE  +  E  +AA++E  A+G LG N     +   +  HHG GAYICGEETALLE
Sbjct: 147 YNYIHGEIFQVYERFEAALEEARAAGYLGDNILGSSFSFQLHAHHGFGAYICGEETALLE 206

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK
Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 266

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V  P   E  +   F +L+E   G        L AVIPGGSS P LPA  +  
Sbjct: 267 IFSVSGDVERPGNYEVPLGTPFAKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASIIME 324

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S ++++++ RLS FY HESCGQCTPCREGTGWM R
Sbjct: 325 CTMDYDSIAKAGSMLGSGAVIVMDDSRNMVESLLRLSYFYAHESCGQCTPCREGTGWMWR 384

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+     ++ ++DLL  V+ NI+GRTICALGDAAA P++ ++K+FRP  E  I   H
Sbjct: 385 VINRIQHEAGRESDLDLLNSVADNIQGRTICALGDAAAMPVRAMLKHFRPEFEALIRNAH 444


>gi|85857933|ref|YP_460135.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85721024|gb|ABC75967.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 637

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +I   N   +  +++ + ++RG +  + K L     + +I EVK SGLRGRGG 
Sbjct: 151 FYRKQVKIALRNCGMIDPENMDEYIARGGYTALHKALTTMSPEDVILEVKTSGLRGRGGG 210

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +   +   Y++ N DE +PG   DR +M  +PH+++EG +I ++AIGA
Sbjct: 211 GFPTGTKWESCRRAEGEI-KYVICNGDEGDPGAYMDRSLMEGDPHSVLEGMIIGAYAIGA 269

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IYVR E+     +LQ A+ +   +GLLG N    G++ DI +  GAGA++CGE TA
Sbjct: 270 HEGYIYVRNEYPLAVANLQHAIGQAREAGLLGKNILGTGFEFDIKIAKGAGAFVCGESTA 329

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEGK G+PR K       GL+  P+ +NNVE+ A VP I+ RG  W+SG G +++ 
Sbjct: 330 LMASLEGKAGEPRAKYIHTVEQGLWNRPSNLNNVETWANVPVIIARGGQWFSGIGVKHST 389

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G +N    VE  M I   ++I +  GGI GG     AV  GG S  C+P   
Sbjct: 390 GTKVFSLVGKINNIGLVEVPMGIPLKDIIYEIGGGIPGGRK-FKAVQTGGPSGGCIP-DT 447

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +D+D L E GS +G+  +IVMD  T ++        F   ESCG+C PCREG   
Sbjct: 448 MIDLPVDFDSLWEAGSMMGSGGMIVMDDKTCMVDIARYFIEFLVSESCGKCVPCREGIYR 507

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  +++ +  G  ++ +++LL  +++ I+  ++CALG +A  P+   I+ FR   +  I 
Sbjct: 508 MNEILQDICAGKGRRGDLELLGRMAEAIKDGSLCALGGSAPNPVLSTIRYFRSEYDAHI- 566

Query: 418 QYHRCN 423
           +  +C 
Sbjct: 567 RSKKCP 572


>gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
 gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
          Length = 626

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 155/427 (36%), Positives = 239/427 (55%), Gaps = 8/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  +S+ + ++ G +    K L +   + IINE+  + LRGRGG 
Sbjct: 139 FYKKQTRVALNNCGHINAESIEEYLAEGGYSATTKALFDMTSEEIINEMSEAHLRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  + K   +   Y+V N DE +PG   DR +M   PH +IEG +IA  A  A
Sbjct: 199 GFPTGKKWDQVLKQT-ESEKYIVCNGDEGDPGAFMDRSMMEGNPHGVIEGMIIAGIATKA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IYVR E+    + L+ A+++    GLLG N    G+D  I ++ GAGA++CGE +A
Sbjct: 258 HNGYIYVRAEYPLAVKRLRIAIEQAMEKGLLGDNILNSGFDFHIQINQGAGAFVCGEGSA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+G PT +NNVE+   V  I+ +G  WY   G ENN 
Sbjct: 318 LTASIEGNRGMPRVKPPRTVEQGLFGKPTVLNNVETFCNVSPIINKGVHWYKTMGTENNY 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AG 296
           GTK F+++G+VN    +E  M  T  ++I    GG++GG     AV  GG S  CL    
Sbjct: 378 GTKAFALTGNVNNTGLIEVPMGTTLRKIIFDIGGGVKGGE--FKAVQIGGPSGGCLCLRE 435

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                 +D+D LK++G+ +G+  ++VM+    +++       F ++ESCG+C PCREGT 
Sbjct: 436 NHLDLTLDFDSLKKVGAMIGSGGLVVMNDKNCMVEMARFFMNFTQNESCGKCIPCREGTR 495

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++  +V+G     +ID L E+++ I    +C LG +AA+P++  ++ FR    E +
Sbjct: 496 RMLEILNDIVEGKGTLDDIDTLEELAETISDTALCGLGKSAAFPVRSTLRYFRDEYIEHV 555

Query: 417 DQYHRCN 423
               +C+
Sbjct: 556 VD-KKCS 561


>gi|325520402|gb|EGC99520.1| NADH-quinone oxidoreductase, F subunit [Burkholderia sp. TJI49]
          Length = 436

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 206/416 (49%), Positives = 268/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGRKIKAVIPGGSSAPVVPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + ++GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
 gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
          Length = 606

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 144/425 (33%), Positives = 234/425 (55%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q ++   ++  +  +++ D +  G ++ + K +    D II+EV+ SGLRGRGGAG
Sbjct: 109 FYAHQQKVALRHIGKIDPENIEDYLKEGGYEALKKAVSMTSDEIISEVEKSGLRGRGGAG 168

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G KW       +  P Y+  N DE +PG   DR I+  +PH +IEG  IA+ A+GA 
Sbjct: 169 FPAGRKWRTAASYEN-FPKYVACNGDEGDPGAFMDRSILEGDPHCVIEGLAIAAVAVGAE 227

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             F Y+R E+      ++ A+++  A G++G +     + +++ V  G GA++CGE TAL
Sbjct: 228 EGFFYIRDEYDLAVRHVKKAIEDAKARGIIGESVMGSSHRLELSVVRGGGAFVCGESTAL 287

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG+ G+PR K       GL+  PT +NNVE++A +P I+++G   ++  G E + G
Sbjct: 288 MASIEGRVGEPRAKYIRSVQRGLWNQPTVLNNVETLANIPVIIKKGGEAFADIGTEGSSG 347

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F++ G V     VE  M  T   LI    GGI        AV  GG S  C+P   M
Sbjct: 348 TKVFALVGKVKRTGLVEVPMGTTLRHLIYDIGGGILNN-RAFKAVQTGGPSGGCIPES-M 405

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D+D L + G+ +G+  +IVMD  + +++     + F   ESCG+CTPCREG   M
Sbjct: 406 LDLEVDFDSLAKYGAMMGSGGMIVMDDRSCMVEVARYYTNFLCEESCGKCTPCREGLRRM 465

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++  + +G  ++ +I+LL  + + ++  ++C+LG  AA P+   I+ FR   E  I +
Sbjct: 466 LEILTDICEGRGREGDIELLERLGRAMQDASLCSLGKTAANPVLTTIQYFREEYEAHIRE 525

Query: 419 YHRCN 423
             RC 
Sbjct: 526 -KRCP 529


>gi|121593382|ref|YP_985278.1| NADH-quinone oxidoreductase subunit F [Acidovorax sp. JS42]
 gi|120605462|gb|ABM41202.1| NADH dehydrogenase subunit F [Acidovorax sp. JS42]
          Length = 453

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 214/420 (50%), Positives = 275/420 (65%), Gaps = 11/420 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I+  L G    SL D  +RG +  + K+L K       +D +I  +K SGLRGRGGAGF 
Sbjct: 29  IYAGLNGSN-WSLKDYEARGGYQALRKLLGKDGGEGLTQDQVIATMKESGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G    
Sbjct: 88  TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISVG 146

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE  +  E  +AA++E  A+G LG N     +   +  HHG GAYICGEETALLE
Sbjct: 147 YNYIHGEIFQVYERFEAALEEARAAGYLGDNILGSSFSFQLHAHHGFGAYICGEETALLE 206

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK
Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 266

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V  P   E  +   F +L+E   G        L AVIPGGSS P LPA  +  
Sbjct: 267 IFSVSGDVERPGNYEVPLGTPFAKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASIIME 324

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S ++++++ RLS FY HESCGQCTPCREGTGWM R
Sbjct: 325 CTMDYDSIAKAGSMLGSGAVIVMDDSRNMVESLLRLSYFYAHESCGQCTPCREGTGWMWR 384

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ R+     ++ ++DLL  V+ NI+GRTICALGD+AA P++ ++K+FRP  E  I   H
Sbjct: 385 VINRIQHEAGRESDLDLLNSVADNIQGRTICALGDSAAMPVRAMLKHFRPEFEALIRNAH 444


>gi|153207266|ref|ZP_01946030.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154706359|ref|YP_001423961.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii Dugway
           5J108-111]
 gi|212212187|ref|YP_002303123.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuG_Q212]
 gi|212218217|ref|YP_002305004.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuK_Q154]
 gi|120576754|gb|EAX33378.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|154355645|gb|ABS77107.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii Dugway
           5J108-111]
 gi|212010597|gb|ACJ17978.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuG_Q212]
 gi|212012479|gb|ACJ19859.1| NADH-quinone oxidoreductase chain F [Coxiella burnetii CbuK_Q154]
          Length = 422

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 206/415 (49%), Positives = 274/415 (66%), Gaps = 6/415 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  L+  +  +L    S G +  + KIL++    + IINE+K S LRGRGGAGF TG+KW
Sbjct: 8   YRTLHLEKPWTLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKW 67

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P+       Y++ N+DESEPGT KDRDI+R  PH ++EG  IA + +GA   + ++R
Sbjct: 68  SFIPRDKPG-EKYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLR 126

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ +   +GL+G N    G D++I  H  AGAYICGEETAL+ SLEGK
Sbjct: 127 GEFWEPFNRCEQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGK 186

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR KPPFPAN GLY  P+ +NN E+ A VP IL +G  W++  G   N GTK+FS+S
Sbjct: 187 RGWPRFKPPFPANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVS 246

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  + I F +L+    GG+R G + L AVIPGGSS+P LPA  M  AIM +
Sbjct: 247 GHVAKPGNYEVPLGIPFADLL-ALAGGMREGSE-LKAVIPGGSSMPVLPAEVMMKAIMSF 304

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DGL E GS LG+  V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+
Sbjct: 305 DGLVEAGSMLGSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRI 364

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            KG   KR+I+ L  V+K IEGRTICA G+AAAWP+ G++K+F    E  +    
Sbjct: 365 EKGEGTKRDIEQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTHGK 419


>gi|257466530|ref|ZP_05630841.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 580

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 153/422 (36%), Positives = 234/422 (55%), Gaps = 6/422 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
             + RI  N   +  +S+ D + +  +  + K L E     +I E++ SGLRGRGG GF 
Sbjct: 98  KQERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFP 157

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K       Y+V NADE +PG   DR I+  +P+ +IEG +IA +AIGA+ A
Sbjct: 158 TGIKWEIASKQE-GNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHA 216

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IY+R E+      LQ A+++    G LG +     +  D+ +  GAGA++CGEETAL++
Sbjct: 217 LIYIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVDLKFGAGAFVCGEETALIQ 276

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S++G++G+P+ KPP+PA  G  G PT VNNVE++  VP I++ G+ W+   G E + GTK
Sbjct: 277 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 336

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G VN    VE  M  T  E+I +  GGI+       AV  GG S  CL    +  
Sbjct: 337 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIK-NGKRFKAVQTGGPSGGCLTNKDL-D 394

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L   GS +G+  +I+MD    ++        F   ESCG+CTPCR G   +  
Sbjct: 395 ISIDFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 454

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ +G     ++ LL E+S  I+  ++C LG  +  P+   +K FR    + I+   
Sbjct: 455 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFREEYIQHIED-K 513

Query: 421 RC 422
            C
Sbjct: 514 TC 515


>gi|254425647|ref|ZP_05039364.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Synechococcus sp. PCC 7335]
 gi|196188070|gb|EDX83035.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Synechococcus sp. PCC 7335]
          Length = 534

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 147/418 (35%), Positives = 234/418 (55%), Gaps = 5/418 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
               Q  +  N   +  + + D ++   +  + ++L E   D +   +  SGLRGRGGAG
Sbjct: 120 FTQQQHIVLENSGKVDPEKIEDYVALQGYAALYRVLREYSPDEVTKAIAQSGLRGRGGAG 179

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           + TG+KW  + K+      Y+V NADE +PG   DR ++  +PH ++EG  IA++A+GA 
Sbjct: 180 YPTGLKWETVAKMPPG-QKYVVCNADEGDPGAYMDRSVLESDPHRVLEGMAIAAYAVGAT 238

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVRGE+      LQ A+ +    GLLGS       D  I +  GAGA++CGEETAL
Sbjct: 239 QGYIYVRGEYPLAINHLQTAIQQARKHGLLGSQIFDSPLDFRIDLRIGAGAFVCGEETAL 298

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG++G P  +PP+PA  GL+G PT +NNVE+ A +  I+R GA W++G G   ++G
Sbjct: 299 MASIEGRRGIPEQRPPYPAESGLWGRPTLINNVETYANIAPIIRNGADWFAGIGTGKSKG 358

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+FS++G V     +E  M I+   +++   GG      ++ AV  GG S  C+PA   
Sbjct: 359 TKVFSLTGKVQNAGLIEVPMGISLQAIVDDIGGG-AAAGRSVKAVQTGGPSGGCIPASA- 416

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ LK++GS +G+  +IVMD  T ++        F   ESCG+C PCR GT  +
Sbjct: 417 FETSVDYESLKQLGSIMGSGGLIVMDDQTSMVDVARYFMEFCMEESCGKCIPCRAGTVQL 476

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +++ +  +G A   ++  L ++   ++  ++C LG AA  P+   ++ FR      +
Sbjct: 477 YQLLCKFTQGQANSADLTQLEQLCDMVKHTSLCGLGQAAPNPVISTLQYFRGEYLALM 534


>gi|206560698|ref|YP_002231463.1| NADH dehydrogenase I chain F [Burkholderia cenocepacia J2315]
 gi|198036740|emb|CAR52640.1| NADH dehydrogenase I chain F [Burkholderia cenocepacia J2315]
          Length = 436

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFAVLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|253702590|ref|YP_003023779.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
 gi|251777440|gb|ACT20021.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
          Length = 593

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 168/426 (39%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
            +  Q R+  T    +  + LS  +    +  ++K + E     +I+EVK SGLRGRGG 
Sbjct: 109 FVDQQMRVVMTGCGQIDPELLSAYLEEDGFKAIEKCVKEMKPAEVIDEVKKSGLRGRGGG 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKWSF          YL+ NADE +PG   DR I+  +P+ +IEG +IA++AIG 
Sbjct: 169 GFPTGMKWSFCA-ASPGNHKYLICNADEGDPGAFMDRSILEGDPYCIIEGMMIAAYAIGC 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + LQ A+D CY  G LG N    G+D D+ +  GAGA++CGEETA
Sbjct: 228 DAGYVYVRAEYPLAIDRLQKALDVCYEKGYLGKNIQGWGFDFDMRIKKGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V  I+  G+ WY+  G +  +
Sbjct: 288 LMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVRHIINNGSEWYAALGTDTTK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V +   VE    ++  ++I K CGGI        AV  GG S  C+PA  
Sbjct: 348 GTKIFAVTGKVKHTGLVEVPAGMSVRDVIYKVCGGIANNRK-FKAVQAGGPSGGCIPAEV 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD +T ++        F K ESCG+C PCR G   
Sbjct: 407 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLSFTKMESCGKCVPCRIGLKA 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  +  +ID L E+   I+  ++C LG  A  PI   +K FR   E  I 
Sbjct: 466 MLDILERITEGRGEMADIDTLLEMGATIKKASLCGLGQTAPNPILSTVKYFRNEYEAHII 525

Query: 418 QYHRCN 423
              RC 
Sbjct: 526 D-KRCP 530


>gi|186476759|ref|YP_001858229.1| NADH-quinone oxidoreductase subunit F [Burkholderia phymatum
           STM815]
 gi|184193218|gb|ACC71183.1| NADH-quinone oxidoreductase, F subunit [Burkholderia phymatum
           STM815]
          Length = 442

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 208/418 (49%), Positives = 268/418 (64%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D + RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWHLQDYVERGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA++E   +G LG N    G+   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALEEARTAGFLGDNIMGSGFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKQGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +  G+ +K ++DLL  V++NI GRTICALGDAAA P++G++K++    E  +    RC
Sbjct: 369 IEHGLGRKEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFEYHVAN-KRC 425


>gi|83590554|ref|YP_430563.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
 gi|83573468|gb|ABC20020.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Moorella thermoacetica ATCC 39073]
          Length = 619

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 164/428 (38%), Positives = 248/428 (57%), Gaps = 7/428 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +S+ + ++   +  + K+L       +I  +K SGLRGRGG 
Sbjct: 133 FFKHQVRIALRNCGLIDPESIGEYIAHDGYQALSKVLTTMKPYEVIETIKKSGLRGRGGG 192

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  +       Y V NADE +PG   DR I+  +PH ++EG  I ++AIGA
Sbjct: 193 GFPTGLKWEFAYRSPGP-VKYFVCNADEGDPGAFMDRSILEGDPHAVLEGMAIGAYAIGA 251

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    GLLG N    G+D DI +  GAGA++CGEETA
Sbjct: 252 SQGYIYVRAEYPVAVQRLKLAISQAREQGLLGKNLFNSGFDFDIDIRLGAGAFVCGEETA 311

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++G+PR +PPFPA  GL+G PT +NNVE++A +PTI+R+G  W++G G E ++
Sbjct: 312 LLASIEGRRGEPRPRPPFPAVSGLWGKPTVINNVETLANIPTIIRQGWEWFAGIGTEKSK 371

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  +  ++I +  G    G     A   GG S  C+PA  
Sbjct: 372 GTKVFALAGKINNNGLVEIPMGTSLRQVIYEIGG-GIPGGKKFKAAQTGGPSGGCIPAEH 430

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A +DY+ L  +G+ +G+  +I+MD  T ++        F K ESCG+CTPCR GT  
Sbjct: 431 L-DAPIDYENLTALGTIMGSGGLIIMDEDTCMVDVAKFFMDFVKDESCGKCTPCRIGTTR 489

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+ +G  +++++DLL E+++ I+   +C LG  A  P+   I  FR      I 
Sbjct: 490 MLEILNRITRGQGEEKDLDLLVELARQIKDTALCGLGQTAPNPVLSTITYFRDEYLAHIR 549

Query: 418 QYHRCNFQ 425
             HRC   
Sbjct: 550 D-HRCPAH 556


>gi|300854657|ref|YP_003779641.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
 gi|300434772|gb|ADK14539.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
          Length = 626

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
              +Q+RI   N   L  + +++ ++   ++ + ++L     D  I+E+K SGLRGRGG 
Sbjct: 140 FYKNQERIALRNCGLLNPEDITEYIAMNGYEALGRVLTQMTPDSTIDEIKKSGLRGRGGG 199

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K  SD   +++ NADE +PG   DR I+  +P++++E   IA + IGA
Sbjct: 200 GFPTGVKWEMTRKSKSD-TKFMICNADEGDPGAFMDRSILEGDPNSVLEAMAIAGYCIGA 258

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IY+R E+      L+ A+ + Y  GLLG N     +   I + +GAGA+ICGEETA
Sbjct: 259 NKGYIYIRAEYPLAINRLKIALKQAYNLGLLGDNILGTNFSFHIDLKYGAGAFICGEETA 318

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+P +KPPFP+ +GL+  PT +NNVE++A +P I+ +G+ W+S  G E ++
Sbjct: 319 LINSIEGGRGEPTVKPPFPSQIGLWKKPTNINNVETLANIPPIILKGSKWFSSIGTEKSK 378

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M IT  E+I    GGIR G     AV  GG S  C+PA  
Sbjct: 379 GTKVFALAGKINNVGLVEVPMGITLREIIYNLGGGIR-GGKKFKAVQTGGPSGGCIPADH 437

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L E+GS +G+  +IVMD    ++        F   ESCG+CT CR G   
Sbjct: 438 L-DTAIDYESLTEIGSMMGSGGMIVMDEDNCMVNIAKFYLQFSVDESCGKCTACRIGNKR 496

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++E + KG      ++ L ++S  I+   +C LG  +  PI   +K F       + 
Sbjct: 497 LLEILEDITKGKGTMEHLEGLKDLSYVIKDSALCGLGQTSPNPIISTMKFFWDEYVAHVK 556

Query: 418 QYHRCN 423
              RC 
Sbjct: 557 D-KRCP 561


>gi|294630801|ref|ZP_06709361.1| NADH oxidoreductase, F subunit [Streptomyces sp. e14]
 gi|292834134|gb|EFF92483.1| NADH oxidoreductase, F subunit [Streptomyces sp. e14]
          Length = 456

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 202/425 (47%), Positives = 261/425 (61%), Gaps = 15/425 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
             D+DR           +L        ++ + K L    D +I  VK SGLRGRGGAGF 
Sbjct: 30  FWDEDR---------SWTLDVYRRHEGYEGLRKALAMSPDDVIAYVKESGLRGRGGAGFP 80

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW F+P+    +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  A
Sbjct: 81  TGMKWQFIPQ-GDGKPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHA 139

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+RGE +     L +AV E YA+G LG N    G D+DI VH GAGAYICGEETALL+
Sbjct: 140 FIYLRGEVVPVLRRLHSAVREAYAAGYLGENVLGSGLDLDITVHAGAGAYICGEETALLD 199

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++GQPRL+PPFPA  GLY CPT VNNVESIA VP IL+ G  W+   G E + G  
Sbjct: 200 SLEGRRGQPRLRPPFPAVAGLYACPTVVNNVESIASVPAILKNGKDWFRSMGSEKSPGFT 259

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+S+SGHV  P   E  + IT  +L++   G        L    PGGSS P      +  
Sbjct: 260 LYSLSGHVAGPGQYEAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-D 316

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+G+   GS LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++
Sbjct: 317 VPLDYEGVGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQ 376

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++  +  G  +  ++D L +++ NI G++ CALGD AA PI   +K FR   EE I    
Sbjct: 377 LLRDIEAGKGRMTDLDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRAEYEEHITGRG 436

Query: 421 RCNFQ 425
            C F 
Sbjct: 437 -CPFD 440


>gi|31747592|gb|AAO38266.1| NADP-reducing hydrogenase subunit C [Leptospirillum ferrooxidans]
          Length = 617

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 148/427 (34%), Positives = 233/427 (54%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRIFTN-LYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +I +  L  +   S+ D ++   +  + K+L     + +I+EV  SGLRGRGG 
Sbjct: 131 FFKGQVKIVSKPLGMIDPLSIDDYIAMDGYAALRKVLSSMTPEQVIDEVTKSGLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG- 117
           GF TG+KW+   K       Y+V NADE +PG   DR ++  +PH++IEG ++A+FA+G 
Sbjct: 191 GFPTGVKWNLTRKAPGP-EKYVVCNADEGDPGAFMDRSVLEGDPHSVIEGMILAAFAVGH 249

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IY R E+    + LQ A+++      LG N        D+ +  GAGAY+CGEET
Sbjct: 250 ARKGYIYCRAEYPLAIKRLQKAINDARERNFLGDNILGSDLSFDLEIKEGAGAYVCGEET 309

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL SL G++G P  KPPFPA  G++G P+ +NNVE++A +  I+  G  WY+ +G E  
Sbjct: 310 ALLASLMGERGMPWPKPPFPAQKGVWGKPSVINNVETLANIGHIILGGGEWYASYGSEKT 369

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK F+++G +     +E        E++    GG+        A   GG S  C+P  
Sbjct: 370 KGTKTFALTGSIKNTGLIEVPAGTPLREIVFSIGGGMVEKKIPFKAAQLGGPSGGCIPTS 429

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D++ +   G+ +G+  ++VMD +  I+        F + ESCG+CTPCR G+ 
Sbjct: 430 GL-DTPVDFENVVSAGAIMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSK 488

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ R+ +G  Q+ ++D L  +S  I+  ++C LG AA  P+   I+ FR   E  I
Sbjct: 489 IMLDILTRITEGKGQEGDLDELVRLSMYIKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI 548

Query: 417 DQYHRCN 423
               RC 
Sbjct: 549 RD-KRCP 554


>gi|206602055|gb|EDZ38537.1| NADH dehydrogenase (quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 617

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 147/427 (34%), Positives = 229/427 (53%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +I T   G +   S+ D ++   +  + K L     + ++ +V  SGLRGRGG 
Sbjct: 131 FFKGQVKIVTKRCGMIDPLSIEDYIAMDGYKALKKALTSMTPEEVVEQVTKSGLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG- 117
           GF TG+KWS   K       ++V NADE +PG   DR ++  +PH ++EG +IAS+A+G 
Sbjct: 191 GFPTGLKWSLTQKSPGP-EKFVVCNADEGDPGAFMDRSVLEGDPHAVLEGMIIASYAVGG 249

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IY R E+      L+ A+ +  A   LG N    G   DI +  GAGAY+CGEET
Sbjct: 250 AKKGYIYCRAEYPLAIRHLRKAIQDAKAHNFLGDNILGTGLCFDIEIKEGAGAYVCGEET 309

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+ G++G P  KPPFPA  G++G P+ +NNVE++  +  I+  G  WY+ +G E  
Sbjct: 310 ALLASIMGERGMPWPKPPFPAQKGVWGKPSVINNVETLGNIGHIILNGGEWYASYGSEKT 369

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK F+++G +     +E        E+I    GG+        A   GG S  C+P  
Sbjct: 370 KGTKTFALTGSIKNSGLIEVPAGTPLREIIYSIGGGMVEKKIPFKAAQLGGPSGGCIPVD 429

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D++ +   G+ +G+  ++VMD +  I+        F + ESCG+CTPCR G+ 
Sbjct: 430 GL-DTPVDFENVVAAGAIMGSGGIVVMDEAACIVDTAKFFLKFTQDESCGECTPCRVGSK 488

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ R+ +G  Q+ ++D L  +S  ++  ++C LG AA  P+   I+ FR   E  I
Sbjct: 489 IMLDILTRITEGKGQEGDLDELVRLSMYVKSNSLCGLGGAAPNPVLSTIRYFREEYEAHI 548

Query: 417 DQYHRCN 423
               RC 
Sbjct: 549 RD-KRCP 554


>gi|86359331|ref|YP_471223.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN
           42]
 gi|86283433|gb|ABC92496.1| NADH-ubiquinone oxidoreductase chain F protein [Rhizobium etli CFN
           42]
          Length = 420

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 189/423 (44%), Positives = 259/423 (61%), Gaps = 7/423 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +  N+    G  LS   + G +  + K+L E   D ++  VK S LRGRGGAGF TG
Sbjct: 3   EPILLKNVDVPGGHLLSTYEAGGGYQALVKVLREYTPDEVVELVKRSNLRGRGGAGFLTG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+PK  S +P YL  NADE EPGT KDR +M  +PH LIEG  ++++AIGA  A++
Sbjct: 63  MKWSFVPKQSS-KPKYLCCNADEGEPGTFKDRILMERDPHQLIEGLAVSAYAIGAKTAYV 121

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE++     L+ A+ E +A G LGS      ++  + +H GAGAYICGEETA+LESL
Sbjct: 122 YIRGEYVTAIRRLEQAIAEAHAKGYLGSRILGSDFNFTVHIHCGAGAYICGEETAMLESL 181

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RG+ W+   G E + G KL+
Sbjct: 182 EGRRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVVRGSDWFRDIGPEKSPGPKLY 241

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG V  P   E  M I   EL++   G        + AVIPGG S P +P   +    
Sbjct: 242 CVSGQVRKPGLYELPMGIPLRELVDHAGG--PPPGRRIKAVIPGGVSAPVIPEHGL-DVG 298

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W+++++
Sbjct: 299 MDFDSLAAAGSMLGSAGVIVIDNSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKIL 358

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+  G     +++ L  + K I G T CALGD AA  ++  +K+FR      I++  RC
Sbjct: 359 RRIEAGDGAPGDLEQLDMLCKGIFGNTFCALGDGAAMGLRAALKHFREEFVAHIEE-RRC 417

Query: 423 NFQ 425
              
Sbjct: 418 PLH 420


>gi|322421845|ref|YP_004201068.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320128232|gb|ADW15792.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 593

 Score =  478 bits (1231), Expect = e-133,   Method: Composition-based stats.
 Identities = 164/426 (38%), Positives = 245/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
            +  Q R+  T    +  + +   +    +  ++K ++      +++EVK SGLRGRGG 
Sbjct: 109 FVDQQMRVVMTGCGQIDPERIDAFLEEDGFKAIEKCVKDMTPAQVVDEVKKSGLRGRGGG 168

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TGMKWSF          YL+ NADE +PG   DR I+  +P+ +IEG +IA++AIG 
Sbjct: 169 GFPTGMKWSFCA-ASPGNHKYLICNADEGDPGAFMDRSILEGDPYCVIEGMMIAAYAIGC 227

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + LQ A+D CY  G LG N    G+D D+ +  GAGA++CGEETA
Sbjct: 228 DAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFDFDMRIKKGAGAFVCGEETA 287

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT +NNVE+ A V  I+ +GA WY+  G E  +
Sbjct: 288 LMASIEGERGMPRPRPPFPAVKGLWGFPTNINNVETFANVRHIINKGADWYASLGTETTK 347

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V +   VE    ++  ++I + CGGI        AV  GG S  C+P+  
Sbjct: 348 GTKIFAVTGKVKHTGLVEVPAGMSVRDVIYQVCGGIANNRK-FKAVQAGGPSGGCIPSEV 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD +T ++        F K ESCG+C PCR G   
Sbjct: 407 L-DTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVARFFLTFTKMESCGKCVPCRIGLKA 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ +G  +  +ID L E+   I+  ++C LG  A  PI   +K FR   E  I 
Sbjct: 466 MLDILERITEGRGEMADIDTLLEMGATIKKASLCGLGQTAPNPILSTVKYFRHEYEAHIL 525

Query: 418 QYHRCN 423
              RC 
Sbjct: 526 D-KRCP 530


>gi|167562182|ref|ZP_02355098.1| NADH-quinone oxidoreductase, F subunit [Burkholderia oklahomensis
           EO147]
          Length = 436

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 203/416 (48%), Positives = 267/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLTGEN-WHLEDYVARGGYAQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA++E   +G LG +    G+   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALEEARRAGFLGDDIMGSGFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|165918808|ref|ZP_02218894.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA
           334]
 gi|165917532|gb|EDR36136.1| NADH dehydrogenase (ubiquinone), F subunit [Coxiella burnetii RSA
           334]
          Length = 422

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 206/415 (49%), Positives = 275/415 (66%), Gaps = 6/415 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  L+  +  +L    S G +  + KIL++    + IINE+K S LRGRGGAGF TG+KW
Sbjct: 8   YRTLHLEKPWTLESYESVGGYQVLRKILKEKTPPENIINEIKESSLRGRGGAGFPTGLKW 67

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P+  +    Y++ N+DESEPGT KDRDI+R  PH ++EG  IA + +GA   + ++R
Sbjct: 68  SFIPRDKTG-EKYVICNSDESEPGTFKDRDILRFNPHQVLEGIAIACYTLGATVGYNFLR 126

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF       + A+ +   +GL+G N    G D++I  H  AGAYICGEETAL+ SLEGK
Sbjct: 127 GEFWEPFNRCEQALAQAREAGLIGKNVLNSGVDIEIFNHFSAGAYICGEETALMNSLEGK 186

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR KPPFPAN GLY  P+ +NN E+ A VP IL +G  W++  G   N GTK+FS+S
Sbjct: 187 RGWPRFKPPFPANFGLYERPSNINNTETYASVPVILEKGGKWFADLGPPKNGGTKIFSVS 246

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  + I F +L+    GG+R G + L AVIPGGSS+P LPA  M  AIM +
Sbjct: 247 GHVAKPGNYEVPLGIPFADLL-ALAGGMREGSE-LKAVIPGGSSMPVLPAEVMMKAIMSF 304

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DGL E GS LG+  V+VMD+ST ++K + R+S FY HESCGQCTPCREGTGW+ R++ R+
Sbjct: 305 DGLVEAGSMLGSGGVMVMDQSTCMVKVLERISKFYMHESCGQCTPCREGTGWLYRLVHRI 364

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            KG   KR+I+ L  V+K IEGRTICA G+AAAWP+ G++K+F    E  +    
Sbjct: 365 EKGEGTKRDIEQLSRVAKGIEGRTICAFGEAAAWPVSGMLKHFYDEFEYHVTHGK 419


>gi|121998539|ref|YP_001003326.1| NADH-quinone oxidoreductase subunit F [Halorhodospira halophila
           SL1]
 gi|121589944|gb|ABM62524.1| NADH dehydrogenase subunit F [Halorhodospira halophila SL1]
          Length = 426

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 199/421 (47%), Positives = 270/421 (64%), Gaps = 8/421 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +T L   +  SL      G +  ++++L        +++EVK S LRGRGGAGF  G+KW
Sbjct: 7   YTTLGYDEPWSLETYRKVGGYRALERVLRTPMSPQEVVDEVKQSALRGRGGAGFPPGIKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            FMP+  +    YL+ N+DESEPGTCKD DI+R  PH ++EG +IA +A+GA   + Y+R
Sbjct: 67  GFMPRDRAG-QKYLICNSDESEPGTCKDHDILRFNPHAVVEGMIIAGYAMGATVGYNYLR 125

Query: 127 GEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           GEF  E  E ++ AV E   +G LG +    G+D ++  H+GAGAYICGEE+AL+ESLEG
Sbjct: 126 GEFHHEPFERMEQAVAEARKAGYLGRDILGSGFDFELHNHYGAGAYICGEESALMESLEG 185

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA VG+YG PTT+NN E++A VP ++R GA W+   G+ NN G K+FS+
Sbjct: 186 KKGQPRYKPPFPAQVGIYGKPTTINNTETLASVPAVIRNGAEWFLNLGKPNNGGEKIFSV 245

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHV  P   E  M   F EL+E   G        L AVIPGGSS P +P   M    MD
Sbjct: 246 SGHVACPGNYEIPMGTPFRELLEMAGG--VRAGHRLKAVIPGGSSTPVVPGETMLETDMD 303

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD +   GS LG+ AV+V+D +TD+++ + R++ FY  ESCGQCTPCREGTGW+ R ++R
Sbjct: 304 YDSIAAAGSMLGSGAVVVIDETTDMVRILARITRFYYAESCGQCTPCREGTGWLYRAVQR 363

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           + +G     ++ +L EV   I G TICA G+AAA P+Q  I++FR   E  I ++ R   
Sbjct: 364 IYEGRGTYDDLRMLEEVPGQIAGHTICAFGEAAATPVQSFIQHFRHEFEHYI-EHGRSPV 422

Query: 425 Q 425
           +
Sbjct: 423 E 423


>gi|117926904|ref|YP_867521.1| NADH-quinone oxidoreductase, F subunit [Magnetococcus sp. MC-1]
 gi|117610660|gb|ABK46115.1| NADH dehydrogenase subunit F [Magnetococcus sp. MC-1]
          Length = 424

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 235/416 (56%), Positives = 297/416 (71%), Gaps = 3/416 (0%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +F N++     +L+ +  +G +  ++K L    + II EVK++GLRGRGGAGF  G+KWS
Sbjct: 8   LFKNIHIQGQNTLAVAQQQGAYKRMEKALGMSGEEIIQEVKSAGLRGRGGAGFPAGLKWS 67

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F+PK    RP YLV NADE EPGTCKDRD+MR +PH LIEG +IA +A+ +   +IY+RG
Sbjct: 68  FIPKDDP-RPKYLVCNADEGEPGTCKDRDLMRFDPHLLIEGMIIAGYAVNSKQGYIYIRG 126

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           EF RE E L+AAV E YA+ LLG N    G D D+ VH GAGAY+CGEE+ALL SLEG+K
Sbjct: 127 EFYREAEVLEAAVAEAYAANLLGKNILGKGVDFDLAVHRGAGAYVCGEESALLNSLEGEK 186

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPRLKPPFPANVGLYGCPT +NNVE++  VP IL +G +WYS  G E + GTKLFS+SG
Sbjct: 187 GQPRLKPPFPANVGLYGCPTVINNVETLCAVPAILEKGGAWYSKLGVEKSSGTKLFSVSG 246

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HVN P   E  + I    LI  + GG+RGGW+NL  VIPGGSS P L   Q    +M Y+
Sbjct: 247 HVNKPGNYEVELGIPLKSLINDYAGGVRGGWENLKGVIPGGSSTPVLIPEQCETILMSYE 306

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L   GS LG  +VIVMD+ST I+KAI RLS FY+HESCGQCTPCREGTGW+ ++M+R+ 
Sbjct: 307 ALAGAGSMLGAGSVIVMDKSTCIVKAIARLSKFYRHESCGQCTPCREGTGWLAQIMDRIE 366

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            G  ++ +IDLL  V  NI+G+TICALGDAAA P+ G I++FR   E  + ++ RC
Sbjct: 367 TGQGREGDIDLLLSVCSNIQGKTICALGDAAAMPVVGAIRHFRDEFEYHV-KHGRC 421


>gi|239943481|ref|ZP_04695418.1| putative NADH dehydrogenase chain F [Streptomyces roseosporus NRRL
           15998]
 gi|239989935|ref|ZP_04710599.1| putative NADH dehydrogenase chain F [Streptomyces roseosporus NRRL
           11379]
 gi|291446952|ref|ZP_06586342.1| NADH dehydrogenase I chain F [Streptomyces roseosporus NRRL 15998]
 gi|291349899|gb|EFE76803.1| NADH dehydrogenase I chain F [Streptomyces roseosporus NRRL 15998]
          Length = 459

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 195/411 (47%), Positives = 257/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 30  ESWTLDTYRRHEGYEGLRKALAMAPDDLIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 88

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 89  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 148

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E Y +G LG+N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 149 LHEAVREAYEAGYLGTNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 208

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   
Sbjct: 209 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFKSMGSEKSPGFTLYSLSGHVTSPGQY 268

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 269 EAPLGITLRQLLDMSGGM--RAGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSM 325

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  +
Sbjct: 326 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGEMAD 385

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 386 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHIT-GKGCPFD 435


>gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 634

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 245/426 (57%), Gaps = 8/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R I +    +  KS+ D ++ G +  + K+L +   + ++ EVK S LRGRGG 
Sbjct: 131 FYKNQQRNILSENIRIDSKSIDDYLAIGGYSALSKVLFKMTPEEVMGEVKKSNLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF    KW    +   D   Y++VNADE +PG   DR ++   PH+++EG +I ++A+GA
Sbjct: 191 GFPAWRKWE-ESRNAPDPIKYVIVNADEGDPGAFMDRALIEGNPHSILEGLIIGAYAVGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  FIYVR E+     ++  A+ +    GL+G N     +D  + VH GAGA++CGE +A
Sbjct: 250 HEGFIYVRQEYPLAVVNINLAIRQAEERGLVGKNILGSNFDFTVKVHMGAGAFVCGESSA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ +LEG+ G+PR K    A  G++  P+ +NNVE+ A V  I+ +GA W++ FG E ++
Sbjct: 310 LMTALEGRAGEPRPKYIHTAVKGVWDHPSVLNNVETWANVTQIINKGADWFTQFGTEGSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G +     VE  M +T  ++  ++ GG   G     AV  GG S  C+P  Q
Sbjct: 370 GTKIFSLVGKITNTGLVEVPMGVTLKDI-IQNIGGGIPGGKKFKAVQTGGPSGGCIPEAQ 428

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   ++D+D L + GS +G+  +IVMD  T ++        F K ESCG+CTPCREG   
Sbjct: 429 L-DLVVDFDQLTKAGSMMGSGGMIVMDEDTCMVDIARYFIDFLKDESCGKCTPCREGIRQ 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M++V+  +  G  ++ +I+LL E++++  G  +CALG +A  P+   I+ FR   E  I 
Sbjct: 488 MLKVLTNITTGKGKEGDIELLEELAES-TGAALCALGKSAPNPVLSTIRYFREEYEAHI- 545

Query: 418 QYHRCN 423
           ++ +C 
Sbjct: 546 RHKKCP 551


>gi|218515777|ref|ZP_03512617.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli
           8C-3]
          Length = 446

 Score =  478 bits (1230), Expect = e-133,   Method: Composition-based stats.
 Identities = 197/423 (46%), Positives = 261/423 (61%), Gaps = 6/423 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +  N+    G  LS   + G +  + K+L E   D +I+ VK S LRGRGGAGF TG
Sbjct: 28  EPILLKNVDVRDGHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTG 87

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKW F+PK    +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++
Sbjct: 88  MKWGFVPKRT-GKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 146

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE++     L+ A+ E +A G LG       ++  + +H GAGAYICGEETA+LESL
Sbjct: 147 YIRGEYVTAIRRLEQAIAEAHAKGYLGKRILGSDFNFAVRIHCGAGAYICGEETAMLESL 206

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RGA W+ G G E + G KL+
Sbjct: 207 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPEKSPGPKLY 266

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG V  P   E  M I   EL+E H GG+      + AVIPGG S P +P   +    
Sbjct: 267 CLSGQVRKPGLYELPMGIALRELVENHAGGV-LPGRRIKAVIPGGVSAPVIPEHGLE-VG 324

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W+++V+
Sbjct: 325 MDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIVEFFHHESCGKCTPCREGLNWVVKVL 384

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+  G     +++ L  + K I G T CALGD AA  ++  + +FR      ID  HRC
Sbjct: 385 RRIEAGDGAPGDLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHIDD-HRC 443

Query: 423 NFQ 425
            F 
Sbjct: 444 PFH 446


>gi|134296428|ref|YP_001120163.1| NADH-quinone oxidoreductase, F subunit [Burkholderia vietnamiensis
           G4]
 gi|134139585|gb|ABO55328.1| NADH dehydrogenase subunit F [Burkholderia vietnamiensis G4]
          Length = 436

 Score =  477 bits (1229), Expect = e-133,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|170698114|ref|ZP_02889194.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           IOP40-10]
 gi|172061204|ref|YP_001808856.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           MC40-6]
 gi|170136972|gb|EDT05220.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171993721|gb|ACB64640.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ambifaria
           MC40-6]
          Length = 440

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 267/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLSIGPQNYLEIGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    +D
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGRKIKAVIPGGSSAPVIPGDIMMQTDLD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|124266601|ref|YP_001020605.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
 gi|124259376|gb|ABM94370.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
          Length = 448

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 213/424 (50%), Positives = 272/424 (64%), Gaps = 13/424 (3%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-------KGRDWIINEVKASGLRGRGGAGF 60
           I   L G     L D  +RG +  + +IL+          D +I EVKASGLRGRGGAGF
Sbjct: 25  IVAGLDGRN-WRLKDYEARGGYQALRRILQGGEGVEPMTPDQVIAEVKASGLRGRGGAGF 83

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMP+       YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G   
Sbjct: 84  PTGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILAYNPHIVIEGMIIAAYAMGISV 142

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            + Y+ GE     E  + A++E  A+G LG+      +   +   HG GAYICGEETALL
Sbjct: 143 GYNYIHGEIFEIYERFEEALEEARAAGYLGNAILGSAHSFQLHAFHGFGAYICGEETALL 202

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GT
Sbjct: 203 ESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGT 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS+ G V  P   E  +   F  L+E   G    G   L AVIPGGSS P LPA  M 
Sbjct: 263 KIFSMVGDVERPGNYEIPLGTPFSTLLELAGG--VKGGRGLKAVIPGGSSAPVLPASIMM 320

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY+HESCGQCTPCREGTGW+ 
Sbjct: 321 NTTMDYDSIAKAGSMLGSGAVIVMDDTRCMVKSLLRLSYFYQHESCGQCTPCREGTGWLW 380

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R+++R+ +G  +  +IDLL  V+ NI+GRTICALGDAAA P++ +IK+FR      I ++
Sbjct: 381 RMVDRIERGHGRMEDIDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFREEFVHHI-EH 439

Query: 420 HRCN 423
             C 
Sbjct: 440 KTCT 443


>gi|198284341|ref|YP_002220662.1| NADH-quinone oxidoreductase subunit F [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667549|ref|YP_002427003.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248862|gb|ACH84455.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519762|gb|ACK80348.1| NADH-quinone oxidoreductase, F subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 427

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 208/415 (50%), Positives = 265/415 (63%), Gaps = 6/415 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
             N        LS     G +D + ++L      D II+E+K S LRGRGGAGF TG+KW
Sbjct: 8   LQNRGLPDSHRLSVYAGTGGYDALRRVLLDSMAPDQIISEIKKSALRGRGGAGFPTGLKW 67

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMPK  +    YL+ NADE EPGTCKDRDIMR+EPH LIEG +I ++A+GA   +I++R
Sbjct: 68  SFMPKGVTG-TKYLLCNADEGEPGTCKDRDIMRYEPHRLIEGMIIGAYAMGASTGYIFIR 126

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF+     ++ A++E YA G LG N     +  D+ VH GAGAYICGEETAL+E+LEGK
Sbjct: 127 GEFVEPIHIVEGALEEAYAKGYLGQNILGTDFSFDLYVHRGAGAYICGEETALMEALEGK 186

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ GLYG PTT+NNVE+ A VP+I+ +G  W+   G+ NN GTK+FS++
Sbjct: 187 KGQPRFKPPFPASYGLYGQPTTINNVETFASVPSIIAKGGEWFLNLGKPNNGGTKIFSVT 246

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M   F EL+E   G        L AVIPGG+S P +    M    MDY
Sbjct: 247 GHVQRPGNYEVPMGTPFKELLEMAGG--LRPGRQLKAVIPGGTSTPMVGGEAMMAVTMDY 304

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG  +VIV+D S  I+K + R++ FY HESCGQCTPCREG GW+ RVM RL
Sbjct: 305 DSIAKSGSALGAGSVIVIDDSVCIVKVVERIARFYMHESCGQCTPCREGMGWLWRVMHRL 364

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  ++ ++ LL +V   IEGRTICAL D    P+   ++ FR   E  I   H
Sbjct: 365 ENGQGREEDLQLLLDVGSRIEGRTICALADGGVAPVVSSVRLFREEYEYHIRHKH 419


>gi|225570605|ref|ZP_03779630.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
 gi|225160618|gb|EEG73237.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
          Length = 628

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 159/425 (37%), Positives = 245/425 (57%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + + + ++ G +  + K+L E   + ++ EV  S LRGRGG 
Sbjct: 141 FYKRQTRLVLENCGHIDAEHIEEYIAHGGYKALGKVLFEMKPEEVVQEVLDSNLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWS + +   +   Y+V N DE +PG   DR IM  +PH +IEG +IA++A+GA
Sbjct: 201 GFQTGYKWSQVARQP-ETTRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIAAYAVGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +    GLLG +    G+   + ++ GAGA++CGE +A
Sbjct: 260 QEGYIYVRAEYPLAISRLKLAIRQAQERGLLGDDILGSGFSFRLHINRGAGAFVCGEGSA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+ A VP I+ RGA WY   G EN+ 
Sbjct: 320 LTASIEGNRGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIISRGADWYKTIGPENSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G V     +E  M  T  E+I    GGI+G  +   AV  GG S  CL    
Sbjct: 380 GTKAFALTGSVKNTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITQH 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK+MG+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  
Sbjct: 439 L-DISLDFDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKR 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V+G  ++ ++D L E+++ I    +C LG +AA P+   +K FR    E + 
Sbjct: 498 MLEILERIVQGNGREEDLDTLDELARTITETALCGLGKSAALPVMSTLKLFREEYMEHVV 557

Query: 418 QYHRC 422
           +  +C
Sbjct: 558 E-KKC 561


>gi|257463175|ref|ZP_05627575.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           sp. D12]
 gi|317060766|ref|ZP_07925251.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12]
 gi|313686442|gb|EFS23277.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. D12]
          Length = 594

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 152/422 (36%), Positives = 235/422 (55%), Gaps = 6/422 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
             + R+  N   +  +S+ D ++ G +  + K L E   + +I E++ +GLRGRGG GF 
Sbjct: 112 KQERRVLRNCGLINPESIEDYLAEGGFLAIQKALTEMTPEQVIEEIQKAGLRGRGGGGFP 171

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG KW    K   +   Y+V NADE +PG   DR I+  +P  +IEG +IA +AIGA  A
Sbjct: 172 TGNKWEIALKQAGE-EKYIVCNADEGDPGAFMDRSILEGDPCGVIEGMMIAGYAIGASQA 230

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
            +Y+R E+      L+ A+++    G LG N     +  D+ +  GAGA++CGEETAL++
Sbjct: 231 LVYIRAEYPLAISRLEKAIEQARKKGYLGKNVFGTSFSFDVTLKFGAGAFVCGEETALIQ 290

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S++G++G+P+ KPP+PA  G  G PT VNNVE++  VP I+R G+ W+   G E++ GTK
Sbjct: 291 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIRYGSDWFREIGTESSPGTK 350

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G VN    VE  M  T  E+I    GGI+       AV  GG S  CL    +  
Sbjct: 351 VFALAGKVNNVGLVEVPMGTTLREIIFDIGGGIK-NGKRFKAVQTGGPSGGCLTNKDL-D 408

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L   GS +G+  +I+MD    ++        F   ESCG+CTPCR G   +  
Sbjct: 409 ISIDFDSLSAKGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 468

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ +G  +  ++ LL E+S  I+  ++C LG  +  P+   +K FR    + I+   
Sbjct: 469 ILSRITEGEGRMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFREEYIQHIED-K 527

Query: 421 RC 422
            C
Sbjct: 528 TC 529


>gi|310818918|ref|YP_003951276.1| NADH dehydrogenase I subunit f [Stigmatella aurantiaca DW4/3-1]
 gi|309391990|gb|ADO69449.1| NADH dehydrogenase I, subunit F [Stigmatella aurantiaca DW4/3-1]
          Length = 445

 Score =  477 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 198/419 (47%), Positives = 270/419 (64%), Gaps = 14/419 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  +L     RG ++++ K LE     II+EVK S LRGRGGAGF TG+KWSF+PK  + 
Sbjct: 19  QSWTLEHYRKRGGYESLKKALEMAPAAIIDEVKKSNLRGRGGAGFPTGLKWSFVPKD-NP 77

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +P YL VNADESEPGT KDR I+  +PH ++EG  IA++A+G H  +IY+RGEF    + 
Sbjct: 78  KPKYLTVNADESEPGTFKDRYILSLDPHMMLEGIAIAAYALGVHTCYIYMRGEFKHPAQR 137

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            QAA+ E YA+G+ G       Y+++  +  GAGAYICGEETALLESLEGKKG PRLKPP
Sbjct: 138 TQAAIQEAYAAGIFGKTLLGRDYELNCYLVRGAGAYICGEETALLESLEGKKGWPRLKPP 197

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA VGL+G PT +NNVE+++ VP I  RGA WYS  G + + GT+L  +SG VN P   
Sbjct: 198 FPAVVGLFGSPTVINNVETLSNVPHIFARGADWYSKLGTDKSGGTRLVCLSGTVNRPGVY 257

Query: 255 EESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
           E  +  T  ELI  +K+  G+  G  ++ AVIPGGSS P L   ++    ++++ L+   
Sbjct: 258 EIPLQTTVSELIFGDKYGQGLPAG-RSVKAVIPGGSSAPVLSPNEL-DVALEFEALRLKQ 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           +  G+  VIVMD ++ +++ +WR++ FY  ESCGQCTPCREGT W  R++ ++ +G  + 
Sbjct: 316 TMAGSGGVIVMDDTSCMVRCLWRVARFYAEESCGQCTPCREGTPWQTRLLRKIEEGRGEM 375

Query: 373 REIDLLYEVSKNIE-------GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            +I++L  V+ +I        G TICALGDAAA P    +  FR   E  I +  RC F
Sbjct: 376 ADIEMLSHVASSIAPYPPMGLGNTICALGDAAALPTHSFLMRFRAEFEAHIHE-KRCPF 433


>gi|307153309|ref|YP_003888693.1| NADH dehydrogenase [Cyanothece sp. PCC 7822]
 gi|306983537|gb|ADN15418.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7822]
          Length = 546

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 149/421 (35%), Positives = 248/421 (58%), Gaps = 7/421 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q RI     G +    +   ++ G + ++ K L +     ++ E+  SGLRGRGG 
Sbjct: 112 FFSRQVRIVREHTGKVDPDRIESYIAVGGYQSLYKTLYDMTPQQVVEEITKSGLRGRGGG 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+   +  Y++ N DE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 172 GYPTGLKWATVAKMP-GKQKYVICNGDEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ +    G+LGS   +  +D  + +  GAGA++CGEETA
Sbjct: 231 DHGYIYVRAEYPLAIKRLEKAIQQAKKYGILGSQIFESHFDFKVDIRIGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PP+PA +GL+ CPT +NNVE+ A +  I+R G +WY+  G E ++
Sbjct: 291 LIHSIEGKRGTPRTRPPYPAELGLWECPTLINNVETYANIAPIIREGGNWYASIGTETSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M IT  E++E+  GGI  G   + AV  GG S  C+PA  
Sbjct: 351 GTKIFALTGKIRNNGLIEVPMGITLREIVEEMGGGIVDG--EVKAVQTGGPSGGCIPAD- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L ++GS +G+  ++VMD +T +++       F + ESCG+C PCR GT  
Sbjct: 408 LLDTPVDYNSLGKLGSMMGSGGMVVMDENTSMVEVAKFYMEFCQEESCGKCVPCRAGTVQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ +LV   A K +++ L  +   ++  ++C LG +A  PI   ++ FR   E  + 
Sbjct: 468 MYEILNKLVNRQATKTDLEKLEALCLVVKETSLCGLGQSAPNPILSTLRYFRAEYEALLQ 527

Query: 418 Q 418
           +
Sbjct: 528 E 528


>gi|239816478|ref|YP_002945388.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus S110]
 gi|239803055|gb|ACS20122.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus S110]
          Length = 446

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 219/418 (52%), Positives = 279/418 (66%), Gaps = 7/418 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
           + +I+  L G     L+D  +RG +  + KIL +G   D +I EVKASGLRGRGGAGF T
Sbjct: 25  EPQIYAGLNGTN-WRLADYEARGGYKALRKILTEGLTPDQVIAEVKASGLRGRGGAGFPT 83

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N+DE EPGTCKDRDI++  PH +IEG  IA++A+G    +
Sbjct: 84  GLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGISVGY 142

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE  +  +  + A++E  A+G LG       Y+  +   HG GAYICGEETALLES
Sbjct: 143 NYIHGEIFQSYDRFEEALEEARAAGYLGDKIMGSTYNFQLHAAHGFGAYICGEETALLES 202

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   Y   G+ NN GTK+
Sbjct: 203 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINNGGQAYLECGKPNNGGTKI 262

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           +S+SG V  P   E  M   F +L+E  CGG+R G   L AVIPGGSS P LPA  M   
Sbjct: 263 YSVSGDVELPGNYEVPMGTPFSKLLE-LCGGVRKG-RTLKAVIPGGSSSPVLPASIMMEC 320

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW+ RV
Sbjct: 321 TMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLRRLSYFYMHESCGQCTPCREGTGWLYRV 380

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++R+  G  +  ++DLL  V+ NI+GRTICALGDAAA P++ +IK+FR   E  I  Y
Sbjct: 381 VDRIHNGQGRASDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEALIPGY 438


>gi|325261423|ref|ZP_08128161.1| protein HymB [Clostridium sp. D5]
 gi|324032877|gb|EGB94154.1| protein HymB [Clostridium sp. D5]
          Length = 1042

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 157/427 (36%), Positives = 240/427 (56%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   ++  SL   ++R  +  + K+L    ++ ++  +K SGLRGRGGA
Sbjct: 141 FFEGQIRIALRNCGRMEFSSLEAYIARDGYGAIAKVLGGMSQEDVVAVIKNSGLRGRGGA 200

Query: 59  GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TG+KW    K  S D   ++V NADE +PG   DR ++  +PH++IEG ++  +AIG
Sbjct: 201 GFPTGVKWEAGRKAQSPDGRKFMVCNADEGDPGAFMDRSLLEGDPHSIIEGMMLGGYAIG 260

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IYVR E+    E L  A+D+  A+G+LG N    G+D D+ +  GAGA++CGEET
Sbjct: 261 ASRGYIYVRAEYPIAVERLGNAIDQARAAGILGKNIMGSGFDFDVEIRIGAGAFVCGEET 320

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           +LL S+EG++G+PR KPPFP   GL+ CPT +NNVE++A V  I+  G+ WY   G   +
Sbjct: 321 SLLASIEGRRGEPRQKPPFPFEKGLFECPTIINNVETLANVAPIILNGSEWYRKIGTAGS 380

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+F+++G +     +E  M     ++     GG   G     A+  GG S  CL   
Sbjct: 381 AGTKVFALAGDIVNAGIIEVPMGTVLGDI-IYKIGGGIIGGKRFKAIQSGGPSGGCLTRA 439

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DYD L E+G+ +G+  ++VM+  T ++        F   ESCG+C PCR GT 
Sbjct: 440 HL-NTRVDYDSLAELGAIMGSGGLVVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTR 498

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++E + +G  +  ++DLL E+++ I+   +C LG  A  P+   +K FR   E  I
Sbjct: 499 RMLELLEGITEGKGRPEDLDLLEELAETIKQTAMCGLGQTAPNPVLSTLKYFRGEYESHI 558

Query: 417 DQYHRCN 423
                C 
Sbjct: 559 YD-KYCP 564


>gi|257054397|ref|YP_003132229.1| NADH dehydrogenase subunit F [Saccharomonospora viridis DSM 43017]
 gi|256584269|gb|ACU95402.1| NADH dehydrogenase subunit F [Saccharomonospora viridis DSM 43017]
          Length = 424

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 201/406 (49%), Positives = 259/406 (63%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q   L+       +  + K L    + ++  +K SGLRGRGGAGF  G+KWSFMP+   D
Sbjct: 13  QSWRLATYEKLEGYTALRKALSGTPEQLVQLIKDSGLRGRGGAGFPAGVKWSFMPQND-D 71

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLV+NADE EPGTCKD  +M  +PH+LIEGC+IAS+A+ AH  FIYVRGE +     
Sbjct: 72  KPHYLVINADEGEPGTCKDIPLMMADPHSLIEGCIIASYAMRAHRCFIYVRGEALHPIRR 131

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L +AV E Y +G LG N    G+D+DI VH GAGAYICGEETALL+SLEG++GQPRLKPP
Sbjct: 132 LNSAVREAYEAGYLGKNILGSGFDLDITVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 191

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLY  PTTVNNVE+IA VP I+  GA W+   G E + G K++SISGHV  P   
Sbjct: 192 FPASAGLYAAPTTVNNVETIASVPYIVNGGAEWFRKMGTEKSPGPKIYSISGHVEKPGQY 251

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +  T  +L+E   G        L    PGGSS P   A  +    +D++G  E GS 
Sbjct: 252 EAPLGTTLRQLLEMAGGM--KDGIPLKFWTPGGSSTPLFTAEHI-DVPLDFEGAAEAGSM 308

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT AV V + +  +  A+ + + FYKHESCG+CTPCREGT W+ +++ER+V G   + +
Sbjct: 309 LGTTAVQVFNETVSVPWAVMKWTQFYKHESCGKCTPCREGTYWLTQILERMVDGRGTESD 368

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ID L ++  NI GR+ CALGD A  PI   IK FR    E  ++  
Sbjct: 369 IDTLLDICDNILGRSFCALGDGATSPITSAIKYFRDEFVELCEKNR 414


>gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5]
 gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5]
          Length = 628

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 157/425 (36%), Positives = 246/425 (57%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + + + +S G ++ ++K+L     + +I E+  S LRGRGG 
Sbjct: 141 FYKKQTRNVLKNCGQIDAEHIQEYISTGGYEALEKVLFNMKPEEVIQEITESNLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWS + +   ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+GA
Sbjct: 201 GFQTGYKWSQVARQQ-EKERYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIAAYAVGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +    GLLG +    G+   + ++ GAGA++CGE +A
Sbjct: 260 SEGYIYVRAEYPLAISRLKLAIAQAEECGLLGDDILGTGFSFHLHINRGAGAFVCGEGSA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+ A VP I+  GA W+   G E++ 
Sbjct: 320 LTASIEGNRGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIINEGADWFKSIGPESSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G V +   +E  M  T  E+I    GGI+G  +   AV  GG S  CL    
Sbjct: 380 GTKAFALTGSVKHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPH 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK+MG+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  
Sbjct: 439 L-DINLDFDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKR 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  +  ++DLL E++  I    +C LG +AA P+   +K FR   E+ + 
Sbjct: 498 MLEILERIVAGNGKMEDLDLLEELANTITDTALCGLGKSAALPVVSTLKLFREEYEQHVV 557

Query: 418 QYHRC 422
           +  +C
Sbjct: 558 E-KKC 561


>gi|15610286|ref|NP_217666.1| NADH dehydrogenase I chain F [Mycobacterium tuberculosis H37Rv]
 gi|15842726|ref|NP_337763.1| NADH dehydrogenase I, F subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|31794326|ref|NP_856819.1| NADH dehydrogenase I chain F [Mycobacterium bovis AF2122/97]
 gi|121639033|ref|YP_979257.1| putative NADH dehydrogenase I (chain F) nuoF [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148663005|ref|YP_001284528.1| NADH dehydrogenase subunit F [Mycobacterium tuberculosis H37Ra]
 gi|148824344|ref|YP_001289098.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis F11]
 gi|215405148|ref|ZP_03417329.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis 02_1987]
 gi|215432109|ref|ZP_03430028.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis EAS054]
 gi|215447440|ref|ZP_03434192.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis T85]
 gi|218754930|ref|ZP_03533726.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis GM 1503]
 gi|219559196|ref|ZP_03538272.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis T17]
 gi|224991525|ref|YP_002646214.1| putative NADH dehydrogenase I chain F [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800184|ref|YP_003033185.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           1435]
 gi|254233769|ref|ZP_04927094.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis C]
 gi|254365775|ref|ZP_04981820.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis str. Haarlem]
 gi|260188191|ref|ZP_05765665.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202296|ref|ZP_05769787.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           T46]
 gi|260206489|ref|ZP_05773980.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           K85]
 gi|289444714|ref|ZP_06434458.1| NADH oxidoreductase (quinone), F subunit [Mycobacterium
           tuberculosis T46]
 gi|289448830|ref|ZP_06438574.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555423|ref|ZP_06444633.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           605]
 gi|289571361|ref|ZP_06451588.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           T17]
 gi|289575862|ref|ZP_06456089.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           K85]
 gi|289746959|ref|ZP_06506337.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           02_1987]
 gi|289755269|ref|ZP_06514647.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054]
 gi|289759280|ref|ZP_06518658.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85]
 gi|289763333|ref|ZP_06522711.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis GM 1503]
 gi|297635793|ref|ZP_06953573.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           4207]
 gi|297732790|ref|ZP_06961908.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           R506]
 gi|306794903|ref|ZP_07433205.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu005]
 gi|307085896|ref|ZP_07495009.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu012]
 gi|313660123|ref|ZP_07817003.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           V2475]
 gi|54037918|sp|P65568|NUOF_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|54041669|sp|P65567|NUOF_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|1781218|emb|CAB06289.1| PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN F) [Mycobacterium tuberculosis
           H37Rv]
 gi|13883048|gb|AAK47577.1| NADH dehydrogenase I, F subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|31619922|emb|CAD95266.1| PROBABLE NADH DEHYDROGENASE I (CHAIN F) NUOF (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN F) [Mycobacterium bovis AF2122/97]
 gi|121494681|emb|CAL73162.1| Probable NADH dehydrogenase I (chain F) nuoF [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124599298|gb|EAY58402.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis C]
 gi|134151288|gb|EBA43333.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis str. Haarlem]
 gi|148507157|gb|ABQ74966.1| NADH dehydrogenase subunit F [Mycobacterium tuberculosis H37Ra]
 gi|148722871|gb|ABR07496.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis F11]
 gi|224774640|dbj|BAH27446.1| putative NADH dehydrogenase I chain F [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321687|gb|ACT26290.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           1435]
 gi|289417633|gb|EFD14873.1| NADH oxidoreductase (quinone), F subunit [Mycobacterium
           tuberculosis T46]
 gi|289421788|gb|EFD18989.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440055|gb|EFD22548.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           605]
 gi|289540293|gb|EFD44871.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           K85]
 gi|289545115|gb|EFD48763.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           T17]
 gi|289687487|gb|EFD54975.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           02_1987]
 gi|289695856|gb|EFD63285.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054]
 gi|289710839|gb|EFD74855.1| NADH dehydrogenase I (chain F) nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis GM 1503]
 gi|289714844|gb|EFD78856.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85]
 gi|308336689|gb|EFP25540.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu005]
 gi|308364631|gb|EFP53482.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu012]
 gi|326902626|gb|EGE49559.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           W-148]
 gi|328459921|gb|AEB05344.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis KZN
           4207]
          Length = 445

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/417 (48%), Positives = 270/417 (64%), Gaps = 11/417 (2%)

Query: 16  QGKSLSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
           +  +L+          +  + K L    D +I+ VK SGLRGRGGAGF+TG KWSF+P+ 
Sbjct: 20  ESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQG 79

Query: 73  CSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            +    +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI AH AF+YVRGE 
Sbjct: 80  DTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEV 139

Query: 130 IRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +     L  AV E YA+G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQ
Sbjct: 140 VPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQ 199

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PRL+PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV
Sbjct: 200 PRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHV 259

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+
Sbjct: 260 TRPGQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGV 316

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
              GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G
Sbjct: 317 GAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETG 376

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
                +ID L ++S +I G++ CALGD AA P+   IK+FR      + +   C F 
Sbjct: 377 RGSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV-EGGGCPFD 432


>gi|182417722|ref|ZP_02949040.1| uptake hydrogenase [Clostridium butyricum 5521]
 gi|237668967|ref|ZP_04528951.1| NADH dehydrogenase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378446|gb|EDT75977.1| uptake hydrogenase [Clostridium butyricum 5521]
 gi|237657315|gb|EEP54871.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 656

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 154/427 (36%), Positives = 241/427 (56%), Gaps = 8/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R+   +   +  +S+ + ++   +  V K L +     II+E+  S LRGRGG 
Sbjct: 169 FYKNQTRVALEHCGHINAESIDEYIALDGYKAVTKALFDMTPSNIIDEISESSLRGRGGG 228

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWS + K  ++   Y+V N DE +PG   DR +M  EPH +IEG +IA  A GA
Sbjct: 229 GFPTGIKWSQVYKQ-NEHDKYIVCNGDEGDPGAFMDRSMMEGEPHRIIEGMIIAGIATGA 287

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IYVR E+    E L+ A+++  + GLLG N    G+D +I +  GAGA++CGE +A
Sbjct: 288 HEGYIYVRAEYPLAVERLEKAIEQAESKGLLGDNILNSGFDFNIRISKGAGAFVCGEGSA 347

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+G PT +NNVE+   VP I+ +GA+WY   G ENN 
Sbjct: 348 LTTSIEGSRGMPRVKPPRTVEKGLFGKPTVLNNVETFCNVPPIILKGANWYKTIGTENNY 407

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-G 296
           GTK F+++G+V +   +E  M     E++    GG++ G     AV  GG S  CL    
Sbjct: 408 GTKAFALTGNVKHTGLIEVPMGTPLREIVFHIGGGVKDGE--FKAVQIGGPSGGCLCVNA 465

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                 +D+D LK++G+ +G+  ++VM+  + +++       F ++ESCG+C PCR GT 
Sbjct: 466 GHLDLKLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCVPCRAGTK 525

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++  +V+G      I++L E+S  I    +C LG +A  P++  +K F+      +
Sbjct: 526 RMLEILTDIVEGRGTNEHINMLEELSDTISATALCGLGKSACLPVKSTLKYFKEEYTAHV 585

Query: 417 DQYHRCN 423
               +C 
Sbjct: 586 VD-KKCP 591


>gi|262200416|ref|YP_003271624.1| NADH-quinone oxidoreductase subunit F [Gordonia bronchialis DSM
           43247]
 gi|262083763|gb|ACY19731.1| NADH-quinone oxidoreductase, F subunit [Gordonia bronchialis DSM
           43247]
          Length = 706

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/413 (47%), Positives = 265/413 (64%), Gaps = 8/413 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L + +    +  + K L+   D II  +KASGLRGRGGAGF  GMKWSF+P+    
Sbjct: 283 DSWTLDNYLQHNGYQGLRKALDTPPDDIIELIKASGLRGRGGAGFPVGMKWSFIPQSDDP 342

Query: 76  --RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
              PHYLVVNADESEPGTCKD  +M   PH+L+EG +IA++AI AH AFIYVRGE     
Sbjct: 343 DAPPHYLVVNADESEPGTCKDMPLMLASPHSLVEGVIIAAYAIRAHHAFIYVRGEVASVI 402

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             L+ AVD+ YA+G LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+
Sbjct: 403 RRLRTAVDDAYAAGYLGRDILGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 462

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GLY  PT VNNVESIA VP I+R G  W+   G E + G  L+S+SGHV  P 
Sbjct: 463 PPFPAVAGLYASPTVVNNVESIASVPPIIRNGVDWFRSMGTEKSPGFTLYSLSGHVERPG 522

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E ++ +T  EL+++  G        L    PGGSS P L A  +    +DY+G+   G
Sbjct: 523 QYEAALGVTLRELLDRAGG--VRAGHQLKFWTPGGSSTPLLTAEHL-DVPLDYEGVGAAG 579

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT A+ + D +T ++ A+ R + FY HESCG+CTPCREGT W++++++RL       
Sbjct: 580 SMLGTKALQIFDETTCVVGAVLRWTQFYAHESCGKCTPCREGTYWLVQLLKRLETEGGTT 639

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            ++D L +V+ +I G++ CALGD A  PI   +K FR   +  +     C F+
Sbjct: 640 ADLDTLADVTNSIVGKSFCALGDGAGSPIVSSLKYFRDEYDAHLASG--CPFE 690


>gi|215413017|ref|ZP_03421718.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis 94_M4241A]
 gi|298526624|ref|ZP_07014033.1| NADH-quinone oxidoreductase subunit F [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496418|gb|EFI31712.1| NADH-quinone oxidoreductase subunit F [Mycobacterium tuberculosis
           94_M4241A]
          Length = 445

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/416 (49%), Positives = 269/416 (64%), Gaps = 11/416 (2%)

Query: 17  GKSLSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
             +L+          +  + K L    D +I+ VK SGLRGRGGAGF+TG KWSF+P+  
Sbjct: 21  SWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGD 80

Query: 74  SD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           +    +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI AH AF+YVRGE +
Sbjct: 81  TGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVV 140

Query: 131 RERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
                L  AV E YA+G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQP
Sbjct: 141 PVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQP 200

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RL+PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV 
Sbjct: 201 RLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVT 260

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P   E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+ 
Sbjct: 261 RPGQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVG 317

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
             GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G 
Sbjct: 318 AAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGR 377

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
               +ID L ++S +I G++ CALGD AA P+   IK+FR      + +   C F 
Sbjct: 378 GSHEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV-EGGGCPFD 432


>gi|302536173|ref|ZP_07288515.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. C]
 gi|302445068|gb|EFL16884.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. C]
          Length = 459

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 193/411 (46%), Positives = 256/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 38  ESWTLETYRRHEGYEGLRKALAMTPDEVIAYVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 96

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+L+EG +IA +AI +  AFIY+RGE +     
Sbjct: 97  KPHYLVVNADESEPGTCKDIPLLFANPHSLVEGMIIACYAIRSEHAFIYLRGETVPVLRR 156

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E YA+G LG +    G ++DI VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 157 LHEAVREAYAAGYLGKDIDGTGRNLDITVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 216

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   
Sbjct: 217 FPAVEGLYACPTVVNNVESIASVPAILNKGKDWFKAMGTEKSPGFTLYSLSGHVAGPGQY 276

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 277 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 333

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     +
Sbjct: 334 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSD 393

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   E+ +     C F 
Sbjct: 394 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHVT-GKGCPFD 443


>gi|302559102|ref|ZP_07311444.1| NADH oxidoreductase (quinone), F subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302476720|gb|EFL39813.1| NADH oxidoreductase (quinone), F subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 449

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/411 (47%), Positives = 255/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 29  EAWTLDVYRRHEGYEGLRKALAMSPDDVIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDG 87

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 88  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 147

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E   +G LG N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 148 LHEAVREAREAGFLGENVLGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 207

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP I+ RG  W+   G E + G  L+S+SGHV  P   
Sbjct: 208 FPAVAGLYACPTVVNNVESIASVPAIMNRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQY 267

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L+E   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 268 EAPLGITLRQLLEMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 324

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  Q  +
Sbjct: 325 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMAD 384

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   EE I     C F 
Sbjct: 385 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEEHITGRG-CPFD 434


>gi|225026580|ref|ZP_03715772.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353]
 gi|224956072|gb|EEG37281.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353]
          Length = 656

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 156/425 (36%), Positives = 242/425 (56%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + + + ++ G + +  K+L E+  + +I  +  S LRGRGG 
Sbjct: 169 FYEKQTRLVLKNCGHIDAEHIEEYIAVGGYQSFAKVLFEQTPNDVIETILESNLRGRGGG 228

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  + +   ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+GA
Sbjct: 229 GFQTGYKWKQVARQQ-EKIRYIVCNGDEGDPGAFMDRSIMEGDPHKMIEGMLIAAYAVGA 287

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +    GLLG +     +   + ++ GAGA++CGE +A
Sbjct: 288 QEGYIYVRAEYPLAISRLRLAISQAEDRGLLGEHILGTDFSFHLHINRGAGAFVCGEGSA 347

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I+ +GA WY   G EN+ 
Sbjct: 348 LTASIEGKRGMPRVKPPRTVEQGLFAKPTVLNNVETFANVPMIIEKGAKWYRSIGPENSP 407

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G V     +E  M  +  E+I    GGI+G      AV  GG S  CL    
Sbjct: 408 GTKAFALTGSVKNTGLIEVPMGTSLREVIYDIGGGIKGDAK-FKAVQIGGPSGGCLITPH 466

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK+MG+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  
Sbjct: 467 L-DVSLDFDSLKKMGAMIGSGGLVVMDDKTCMVEVARFFMNFTQNESCGKCVPCREGTKR 525

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G   + ++DLL E++  I    +C LG +AA P+   ++ FR   EE + 
Sbjct: 526 MLEILERIVAGKGTREDLDLLDELASTITDTALCGLGKSAALPVMSTLRLFRKEYEEHVV 585

Query: 418 QYHRC 422
              +C
Sbjct: 586 D-KKC 589


>gi|317059209|ref|ZP_07923694.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
 gi|313684885|gb|EFS21720.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium sp. 3_1_5R]
          Length = 594

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 153/422 (36%), Positives = 234/422 (55%), Gaps = 6/422 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
             + RI  N   +  +S+ D + +  +  + K L E     +I E++ SGLRGRGG GF 
Sbjct: 112 KQERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFP 171

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K       Y+V NADE +PG   DR I+  +P+ +IEG +IA +AIGA+ A
Sbjct: 172 TGIKWEIASKQE-GNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHA 230

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IY+R E+      LQ A+++    G LG +     +  D+ +  GAGA++CGEETAL++
Sbjct: 231 LIYIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVNLKFGAGAFVCGEETALIQ 290

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S++G++G+P+ KPP+PA  G  G PT VNNVE++  VP I++ G+ W+   G E + GTK
Sbjct: 291 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 350

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G VN    VE  M  T  E+I +  GGI+       AV  GG S  CL    +  
Sbjct: 351 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIK-NGKRFKAVQTGGPSGGCLTNKDL-D 408

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L   GS +G+  +I+MD    ++        F   ESCG+CTPCR G   +  
Sbjct: 409 ISIDFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 468

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ +G     ++ LL E+S  I+  ++C LG  +  P+   +K FR    + I+   
Sbjct: 469 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFREEYIQHIED-K 527

Query: 421 RC 422
            C
Sbjct: 528 TC 529


>gi|302344257|ref|YP_003808786.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301640870|gb|ADK86192.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 638

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 159/422 (37%), Positives = 239/422 (56%), Gaps = 8/422 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q+R+   N+  +    ++D+++ G +  + K L E     II EVK+SGLRGRGG GF T
Sbjct: 148 QERVVLRNIGHIDPTDITDAIAAGGYQGLAKALGEMTPAEIIEEVKSSGLRGRGGGGFPT 207

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW    K   + P Y++ NADE +PG   DR I+  +P +++EG  IA++A+GA   F
Sbjct: 208 GLKWQSCAKAEGE-PKYVICNADEGDPGAYMDRSILEGDPFSVLEGMTIAAYAVGARHGF 266

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           +YVR E+      L  A+ +    GLLG N   LG+D DI +  GAGA++CGE TAL+ S
Sbjct: 267 VYVRNEYPLAVVRLVGAIKQAKQYGLLGENILGLGFDFDIKISTGAGAFVCGESTALMRS 326

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK G+PR K       G    P+ +NNVE+ A VP I++ GA W++  G   ++GTK+
Sbjct: 327 LEGKVGRPRAKYIHTVEHGYRDKPSNLNNVETFANVPMIIKNGAQWFASMGTATSKGTKV 386

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+ G+V     VE  M  +   ++    GG         AV  GG S  C+PA  M   
Sbjct: 387 FSLVGNVKNTGLVEVPMGASLRHIVYDVGGGTL--KKAFKAVQSGGPSGGCIPAS-MLDI 443

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ L E G+ +G+  +IVMD+ T ++        F + ESCGQCTPCREG   ++++
Sbjct: 444 PVDYEKLVETGAMMGSGGMIVMDQDTCMVDVARYFLEFLQEESCGQCTPCREGIKRLLQI 503

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +  + +G  ++ +I+LL E+S  ++  ++C LG +A  P+   I+ FR   E  I     
Sbjct: 504 LTDICQGRGREGDIELLQELSATVKELSLCGLGGSAPNPVLSTIRYFRDEYESHIRD-KF 562

Query: 422 CN 423
           C 
Sbjct: 563 CP 564


>gi|83720620|ref|YP_441619.1| NADH-quinone oxidoreductase subunit F [Burkholderia thailandensis
           E264]
 gi|167580427|ref|ZP_02373301.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis TXDOH]
 gi|167618536|ref|ZP_02387167.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis Bt4]
 gi|257139685|ref|ZP_05587947.1| NADH-quinone oxidoreductase, F subunit [Burkholderia thailandensis
           E264]
 gi|83654445|gb|ABC38508.1| NADH-quinone oxidoreductase, F subunit [Burkholderia thailandensis
           E264]
          Length = 436

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/416 (49%), Positives = 266/416 (63%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE   +G LG       +  ++  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGEKIMGSDFSFELHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|56478181|ref|YP_159770.1| NADH dehydrogenase I, chain F [Aromatoleum aromaticum EbN1]
 gi|56314224|emb|CAI08869.1| NADH dehydrogenase I, chain F [Aromatoleum aromaticum EbN1]
          Length = 437

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 214/418 (51%), Positives = 271/418 (64%), Gaps = 7/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   + G +   L D + RG +  + KI+ +    + +I E+KAS LRGRGGAGF TG+K
Sbjct: 7   ILAGVDGDRTWRLQDYIGRGGYSALKKIIAEKIPAETVIAELKASSLRGRGGAGFPTGLK 66

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YL  N+DE EPGT KDRDI+R+ PH++IEG  IA++A+G    + Y+
Sbjct: 67  WSFMPRSFPG-AKYLACNSDEGEPGTFKDRDILRYNPHSVIEGMTIAAYAMGCERGYNYI 125

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     E  + A+ E   +GLLG       +  ++  HHG GAYICGEETALLES+EG
Sbjct: 126 HGEIFEIYERFEEALAEAREAGLLGQKILGSDFSFELFAHHGYGAYICGEETALLESIEG 185

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   +   G+ NN GTKLFSI
Sbjct: 186 KKGQPRFKPPFPASYGLYGKPTTINNTETFASVPFIINMGGESFLNLGKPNNGGTKLFSI 245

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHVN P   E  M   F EL+E   G    G   L AVIPGGSS P LPA  M    MD
Sbjct: 246 SGHVNRPGNYEIGMGTPFAELLEMAGGM--RGGGKLKAVIPGGSSSPVLPAAVMMDCTMD 303

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +T ++KA+ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 304 YDSIAKAGSMLGSGAVIVMDETTCMVKALERLSYFYFEESCGQCTPCREGTGWLYRVVHR 363

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +  G+ ++ ++DLL  V+ NI GRTICALGDAA+ P+Q  IK+F    E  I+   +C
Sbjct: 364 IENGLGRRDDLDLLNSVTGNIMGRTICALGDAASMPVQSFIKHFGSEFEYHIEN-KKC 420


>gi|182413363|ref|YP_001818429.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
 gi|177840577|gb|ACB74829.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
          Length = 668

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 143/418 (34%), Positives = 242/418 (57%), Gaps = 7/418 (1%)

Query: 4   DQDRI-FTNLYGLQGKSLSDSMSR-GHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
            Q RI   N   +   S+ D +     +  + K L E   + +I E+KASGLRGRGGAGF
Sbjct: 218 RQARIVLRNCGEVDPDSVEDYLRHAQGYQALRKALFELTPEKVIGELKASGLRGRGGAGF 277

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T MKW       ++   Y++ N DE +PG   DR ++  +PH+++EG ++A FA+GA  
Sbjct: 278 PTWMKWQLTRAQPAE-QRYVICNGDEGDPGAFMDRSVLESDPHSVLEGMILAGFAMGASR 336

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            + Y+R E+ +  E ++ A+ +   +GLLG N    G+  +  +  GAGA++CGEETAL+
Sbjct: 337 GYFYIRAEYPKAVERVERAIAQAREAGLLGENILGSGFSFNAKIRLGAGAFVCGEETALI 396

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG++G P  +PP+P+  GL+G PT +NNVE++A +P IL RG +WY+G+G E ++GT
Sbjct: 397 ASIEGRRGSPSPRPPYPSVRGLWGRPTAINNVETLANIPAILLRGGAWYAGYGTEKSKGT 456

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F+++G V     VE  M  T  +++ + CGG+    + + AV  GG S   +P   + 
Sbjct: 457 KVFAVTGKVMNAQLVEVPMGTTLRQIVYEICGGVLDDKE-IKAVQTGGPSGGVIPEKHL- 514

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              + Y+ L+++GS +G+  ++VMD++  ++        F   ESCG+C PCR G   M+
Sbjct: 515 DTPVSYETLQQLGSIMGSGGMLVMDKNDSMVDVARFYLRFCVDESCGKCAPCRIGGYQML 574

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++++R+ +G     ++  L  +   ++  ++C LG  A  P+   ++ F    +  I+
Sbjct: 575 QILDRISRGRGSAEDLVTLRRICTAMQKASLCGLGQTAPNPVLSTLRYFEEEYKAYIE 632


>gi|170076827|ref|YP_001733465.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
 gi|22652021|gb|AAN03565.1|AF381045_2 hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
 gi|169884496|gb|ACA98209.1| hydrogenase large diaphorase subunit F [Synechococcus sp. PCC 7002]
          Length = 534

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 146/409 (35%), Positives = 247/409 (60%), Gaps = 5/409 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + +   ++RG + ++ ++LE      ++ E+  SGLRGRGG G+ TG+KW
Sbjct: 122 VLENSGKIDPERIEAYIARGGYRSLHQVLEDLTPMAVVEEITQSGLRGRGGGGYPTGLKW 181

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           + + K+  D   Y+V NADE +PG   DR ++  +PH ++EG  IA +A+GA+  +IY+R
Sbjct: 182 ATVAKMPGD-QKYVVCNADEGDPGAFMDRAVLESDPHRVLEGMAIAGYAVGANHGYIYIR 240

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + L+ A+ +  + GLLGS      ++  I +  GAGA++CGEETAL+ S+EG 
Sbjct: 241 AEYPLAIQRLEKAIKQAKSKGLLGSQIFNSPFNFTIDIRIGAGAFVCGEETALIASIEGG 300

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PP+PA  GL+G PT +NNVE+ A +  I+R GA W+S  G E ++GTK+F+++
Sbjct: 301 RGTPRPRPPYPAQSGLWGHPTLINNVETYANIVPIIREGADWFSSIGTEKSKGTKVFALT 360

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V     +E  M     +++E+  GGI      + +V  GG S  C+PA  +    ++Y
Sbjct: 361 GKVKNNGLIEVPMGTPVRQIVEQMGGGIPDSG-TVKSVQTGGPSGGCIPADYL-DTPIEY 418

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L ++G+ +G+  +IVMD +T+++        F + ESCG+C PCR GT  M  ++ ++
Sbjct: 419 DSLIKLGTMMGSGGMIVMDEATNMVDVAKFYMEFCQCESCGKCIPCRAGTVQMSGLLSKM 478

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +KG A+ ++I+LL ++   ++  ++C LG +A  PI   ++ FR   + 
Sbjct: 479 LKGQAEPKDIELLEQLCHMVKEASLCGLGQSAPNPILSTLRYFRAEYDA 527


>gi|319638821|ref|ZP_07993579.1| NADH dehydrogenase subunit I F [Neisseria mucosa C102]
 gi|317399725|gb|EFV80388.1| NADH dehydrogenase subunit I F [Neisseria mucosa C102]
          Length = 431

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 202/406 (49%), Positives = 261/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +  +I+EVKASGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILSENISQSDVIDEVKASGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+ +  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALAQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ + VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFSSVPFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEVLKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFRDEFVHYIEH 421


>gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
 gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
          Length = 629

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 163/430 (37%), Positives = 249/430 (57%), Gaps = 10/430 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +S G ++ ++K L +   + +I+E+  S LRGRGG 
Sbjct: 142 FYKKQTRIVLKNCGHIDAEHIEEYLSIGGYEALEKALFDMKPEEVISEISESNLRGRGGG 201

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWS +     ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+GA
Sbjct: 202 GFPTGYKWSQVAGQE-EKIRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGIMIAAYAVGA 260

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+++    GLLG +     +   + ++ GAGA++CGE +A
Sbjct: 261 QEGYIYVRAEYPLAISRLKRAIEQAEEYGLLGDHILGTDFSFHLHINKGAGAFVCGEGSA 320

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+G PT +NNVE+ A VP I+  GA W+ G G E + 
Sbjct: 321 LTASIEGNRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIITEGAQWFKGIGPEKSP 380

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G VN+   +E  M  T  E+I    GGI+G  +   AV  GG S  CL    
Sbjct: 381 GTKAFALTGSVNHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPH 439

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK+MG+ +G+  ++VMD ST +++       F ++ESCG+C PCREGT  
Sbjct: 440 L-DVNLDFDSLKKMGAMIGSGGLVVMDDSTCMVEVARFFMNFTQNESCGKCVPCREGTKR 498

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V+G  +  ++DLL E++  I    +C LG +AA P+   +K FR    E + 
Sbjct: 499 MLEILERIVEGKGKPEDLDLLEELATTITETALCGLGKSAALPVMSTLKLFRDEYVEHVV 558

Query: 418 QY----HRCN 423
                 H CN
Sbjct: 559 DKKCASHNCN 568


>gi|315917685|ref|ZP_07913925.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691560|gb|EFS28395.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 594

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 153/422 (36%), Positives = 234/422 (55%), Gaps = 6/422 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
             + RI  N   +  +S+ D + +  +  + K L E     +I E++ SGLRGRGG GF 
Sbjct: 112 KQERRILHNCGVINPESVEDYLEQDGFRAIQKALQEMTPVKVIQEIQNSGLRGRGGGGFP 171

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K       Y+V NADE +PG   DR I+  +P+ +IEG +IA +AIGA+ A
Sbjct: 172 TGIKWEIASKQE-GNEKYIVCNADEGDPGAFMDRSILEGDPYGVIEGMMIAGYAIGANHA 230

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IY+R E+      LQ A+++    G LG +     +  D+ +  GAGA++CGEETAL++
Sbjct: 231 LIYIRAEYPLAISRLQKAIEQARKKGYLGKHIFGTSFSFDVDLKFGAGAFVCGEETALIQ 290

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S++G++G+P+ KPP+PA  G  G PT VNNVE++  VP I++ G+ W+   G E + GTK
Sbjct: 291 SMQGERGEPKSKPPYPAQSGYLGKPTVVNNVETLLNVPLIIQHGSEWFREIGTEKSPGTK 350

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G VN    VE  M  T  E+I +  GGI+       AV  GG S  CL    +  
Sbjct: 351 VFALAGKVNNVGLVEVPMGTTLREIIYEIGGGIK-NGKRFKAVQTGGPSGGCLTNKDL-D 408

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L   GS +G+  +I+MD    ++        F   ESCG+CTPCR G   +  
Sbjct: 409 ISIDFDTLAARGSIMGSGGMIIMDEDDCMVSIAKFFLEFTLDESCGKCTPCRIGNTRLYE 468

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++ R+ +G     ++ LL E+S  I+  ++C LG  +  P+   +K FR    + I+   
Sbjct: 469 ILTRITEGEGTMEDLKLLEELSDTIKEASLCGLGQTSPNPVLSTLKEFREEYIQHIED-K 527

Query: 421 RC 422
            C
Sbjct: 528 TC 529


>gi|46200217|ref|YP_005884.1| NADH-quinone oxidoreductase chain F [Thermus thermophilus HB27]
 gi|46197845|gb|AAS82257.1| NADH-quinone oxidoreductase chain F [Thermus thermophilus HB27]
          Length = 438

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 192/426 (45%), Positives = 261/426 (61%), Gaps = 12/426 (2%)

Query: 6   DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
            R    LY   G     +L   +  G ++   ++L EK  D +I EVK SGLRGRGGAGF
Sbjct: 11  PRFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGF 70

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    + HYL+ NADESEPG+ KDR I+   PH LIEG ++A +AI A  
Sbjct: 71  PTGLKWSFMPKDD-GKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATV 129

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVRGE+ R  + L+ A+ E  A G LG N     +  D+ VH GAGAYICGEETAL+
Sbjct: 130 GYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALM 189

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG +  PRLKPPFPA  GL+G PTT+NNVE++A V  I+ RGA W++  G E ++G 
Sbjct: 190 NSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGM 249

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQM 298
           KL+ ISG V  P   E  M  TF ELI +  GG     + + A+IPGGSS P LP   ++
Sbjct: 250 KLYQISGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQAIIPGGSSTPPLPFTEEV 306

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-W 357
               M Y+ L+  GS LGT  VI++     ++ A+W L+ FY HESCG+CTPCREG   +
Sbjct: 307 LDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGF 366

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +  ++  G  ++++++ L  +   IEGR+ C L DAA WP++G +++F+        
Sbjct: 367 MVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAR 426

Query: 418 QYHRCN 423
           +     
Sbjct: 427 EKRPVP 432


>gi|55980058|ref|YP_143355.1| NADH-quinone oxidoreductase subunit 1 [Thermus thermophilus HB8]
 gi|2499313|sp|Q56222|NQO1_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 1; AltName:
           Full=NADH dehydrogenase I chain 1; AltName: Full=NDH-1
           subunit 1
 gi|90109654|pdb|2FUG|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109662|pdb|2FUG|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109670|pdb|2FUG|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109678|pdb|2FUG|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|258588588|pdb|3I9V|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588596|pdb|3I9V|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588604|pdb|3IAM|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588612|pdb|3IAM|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588620|pdb|3IAS|1 Chain 1, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588628|pdb|3IAS|A Chain A, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588636|pdb|3IAS|J Chain J, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588644|pdb|3IAS|S Chain S, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|296863604|pdb|3M9S|1 Chain 1, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|296863617|pdb|3M9S|A Chain A, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|1279866|gb|AAA97943.1| NADH dehydrogenase I, subunit NQO1 [Thermus thermophilus]
 gi|55771471|dbj|BAD69912.1| NADH-quinone oxidoreductase chain 1 [Thermus thermophilus HB8]
          Length = 438

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 192/426 (45%), Positives = 261/426 (61%), Gaps = 12/426 (2%)

Query: 6   DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
            R    LY   G     +L   +  G ++   ++L EK  D +I EVK SGLRGRGGAGF
Sbjct: 11  PRFERTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGF 70

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    + HYL+ NADESEPG+ KDR I+   PH LIEG ++A +AI A  
Sbjct: 71  PTGLKWSFMPKDD-GKQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATV 129

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVRGE+ R  + L+ A+ E  A G LG N     +  D+ VH GAGAYICGEETAL+
Sbjct: 130 GYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALM 189

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG +  PRLKPPFPA  GL+G PTT+NNVE++A V  I+ RGA W++  G E ++G 
Sbjct: 190 NSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGM 249

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQM 298
           KL+ ISG V  P   E  M  TF ELI +  GG     + + A+IPGGSS P LP   ++
Sbjct: 250 KLYQISGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQAIIPGGSSTPPLPFTEEV 306

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-W 357
               M Y+ L+  GS LGT  VI++     ++ A+W L+ FY HESCG+CTPCREG   +
Sbjct: 307 LDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGF 366

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +  ++  G  ++++++ L  +   IEGR+ C L DAA WP++G +++F+        
Sbjct: 367 MVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAR 426

Query: 418 QYHRCN 423
           +     
Sbjct: 427 EKRPVP 432


>gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 597

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 169/426 (39%), Positives = 244/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI     G +  + + + ++   +  + K L E     +I+EVK SGLRGRGG 
Sbjct: 111 FYKRQKRIALRHCGLINPEIIEEYIANDGYRALAKALTEMTPQQVIDEVKQSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG KW F      D   Y+V NADE +PG   DR I+  +PHT++E   IA +AIGA
Sbjct: 171 GFSTGTKWQFAANAQGDI-KYVVCNADEGDPGAFMDRSILEGDPHTVLEAMEIAGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+++    GLLG N     +  DI +  G+GA++CGEETA
Sbjct: 230 SEGYIYVRAEYPIAVKRLEIAIEQARNHGLLGKNILGTDFSFDIFIRLGSGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++G+PR +PPFPAN GL+  PT +NNVE+ A VP I+ +GA W+S  G E ++
Sbjct: 290 LLASVEGRRGEPRPRPPFPANKGLWDKPTIINNVETYANVPEIILKGAKWFSSVGSEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G +N+   VE  M  T  E+I   CGGI        AV  GG S  CLPA  
Sbjct: 350 GTKVFAVGGKINHTGLVEIPMGTTLKEVIYDICGGIPNN-KKFKAVQTGGPSGGCLPAS- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    ++YD L + GS +G+  +IVMD    ++        F + ESCG+C PCR GT  
Sbjct: 408 LLDMPIEYDTLIQAGSMMGSGGMIVMDEDNCMVDIAKFFLTFTQEESCGKCPPCRIGTKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+  G  ++ +I+LL  ++ +I+   +C LG  A  P+   I+ FR   E  I 
Sbjct: 468 MLEILERITNGEGEEGDIELLENLANSIKASALCGLGQTAPNPVLSTIRYFRDEYEAHIK 527

Query: 418 QYHRCN 423
              +C 
Sbjct: 528 D-KKCP 532


>gi|255525709|ref|ZP_05392641.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296184813|ref|ZP_06853224.1| putative NAD-dependent formate dehydrogenase, beta subunit
           [Clostridium carboxidivorans P7]
 gi|255510611|gb|EET86919.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050595|gb|EFG90018.1| putative NAD-dependent formate dehydrogenase, beta subunit
           [Clostridium carboxidivorans P7]
          Length = 584

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 151/425 (35%), Positives = 237/425 (55%), Gaps = 7/425 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
           L +Q RI   N   +  + +   + +  +  +++++ E   + +I EVK +GLRGRGGAG
Sbjct: 99  LKNQVRIVLKNCGIINPEKIEQYIDKDGYKALNRVVKEMTPNEVIEEVKIAGLRGRGGAG 158

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW    K   +   Y+V NADE +PG   DR ++  +PH ++EG  IA +AIGA 
Sbjct: 159 FPTWFKWDAARKSKGE-DKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAIAGYAIGAK 217

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVR E+    E L+ A+ +      LG +     +D DI++  GAGA++CGEETAL
Sbjct: 218 KGYIYVRAEYPLAIERLKIAIKQAREKNYLGKSIMGSSFDFDILIKTGAGAFVCGEETAL 277

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + SLEG++G PRLKPPFPA  G +G PT +NNVE+ A VP IL  G   ++ +G E ++G
Sbjct: 278 IASLEGERGMPRLKPPFPAQSGYFGKPTNINNVETYANVPWILVHGGKAFAAYGTEKSKG 337

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G +     VE  M +T  E +    GG   G     AV  GG S  C+P   +
Sbjct: 338 TKVFALAGKIKNGGLVEVPMGMTLRE-VIYGIGGGIKGDKEFKAVQMGGPSGGCIPRK-L 395

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ + + G+ +G+  ++VMD +T ++        F   ESCG+C  CR GT  M
Sbjct: 396 LDTPVDYESINKTGAIMGSGGMVVMDENTCMVDMARFFLDFTCKESCGKCVYCRIGTKRM 455

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +++++  G     +ID+L E+  +++  ++C LG     PI   ++ F+      I  
Sbjct: 456 LEILKKICSGEGSTEDIDILQELCISVKDGSLCGLGQTTPNPILTTLRYFKDEYIAHIKD 515

Query: 419 YHRCN 423
            H+C 
Sbjct: 516 -HKCP 519


>gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
 gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
          Length = 624

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 153/412 (37%), Positives = 234/412 (56%), Gaps = 5/412 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKW 66
           I  ++   +  S+ D M RG + +  K+L++G  DW++  +K SGLRGRGGAGF TG+KW
Sbjct: 147 IMEDIGKCECDSIDDYMGRGGYLSFIKVLKEGNPDWVVKTIKDSGLRGRGGAGFPTGVKW 206

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
                   D   ++V N DE +PG   +R ++  +PH ++EG +IA++ IGA   + Y+R
Sbjct: 207 EITKNSKGD-RKFVVCNGDEGDPGAFMNRTLLERDPHAVLEGMLIAAYTIGAQKGYAYIR 265

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    E  + A+++    GL+G N    G+  DI +  GAGA++CGEETALL S+EGK
Sbjct: 266 AEYPVAVEMFRKAIEDAKRLGLVGENILGTGFSFDIEIKEGAGAFVCGEETALLASIEGK 325

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PP+PA VGL+G PT +NNVE+ A VP I+R GA  Y   G  N+ GTK+FS++
Sbjct: 326 RGVPRPRPPYPAQVGLWGYPTLINNVETYANVPKIIRDGAENYRKRGVPNSPGTKMFSVT 385

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V     +E     T  +++   CGG+    +   AV  GG S  CL    +    +DY
Sbjct: 386 GPVRLTGIIEVEFGTTLRQIVYDICGGLTDDNE-FKAVQIGGPSGACLSEAFL-DLPLDY 443

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D LK  G+ +G+  ++V+ +   +++       F K ESCG+C PCREG     R++ER 
Sbjct: 444 DSLKSAGAMVGSGGIVVLSKKACMVEVARFFLDFTKRESCGKCIPCREGLMQSYRILERF 503

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +G     +++ L  ++  I+  + C LG  A  PI   ++ FR      I+
Sbjct: 504 TQGKGTYEDLENLEFLAGLIKTASACGLGQTAPNPILSTLRLFRDEYIAHIE 555


>gi|148657645|ref|YP_001277850.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1]
 gi|148569755|gb|ABQ91900.1| NADH dehydrogenase (quinone) [Roseiflexus sp. RS-1]
          Length = 537

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 154/424 (36%), Positives = 250/424 (58%), Gaps = 7/424 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T Q RI   N   +  + +   ++ G +  +   L E     +I+ V  SGLRGRGGA
Sbjct: 111 FFTLQKRIVLENSGIIDPERIESYIAAGGYQALYHALHEMTPAEVIDVVTRSGLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K   D   Y+V NADE +PG   DR I+  +PH ++EG  IA++A+GA
Sbjct: 171 GYPTGLKWATVAKSHGD-RKYVVCNADEGDPGAFMDRSIIESDPHKVLEGMAIAAYAVGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + LQ A+ +    GLLG+     G+   I +  GAGA++CGEETA
Sbjct: 230 DQGYVYVRAEYPLAIQRLQRAIAQARRHGLLGAQIFDSGFTFRIDIRVGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++GQPR +PP+PA  GL+G PT +NNVE+ A +P I+R GA W++  G E ++
Sbjct: 290 LMASIEGRRGQPRPRPPYPAESGLWGRPTLINNVETFANIPPIIRNGAEWFAAIGAETSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G + +   +E  M +T  +++E+  GG+  G   + AV  GG S  C+PA  
Sbjct: 350 GTKVFALTGKIRHTGLIEVPMGVTLRQIVEEMGGGVPDG--RVKAVQTGGPSGGCIPAA- 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L+ +GS +G+  ++VMD +T+++        F K ESCG+C PCR GT  
Sbjct: 407 LLDTPVDYESLQRVGSIMGSGGMVVMDDATNMVDVAHFYMEFCKDESCGKCIPCRAGTAQ 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++ +  G A   +++ L ++   ++  ++C LG +A  P+   ++ FR   E  + 
Sbjct: 467 MLHMLDLIRAGQATIADLEQLEQLCVMVKETSLCGLGQSAPNPVLSTMRYFRQEYEALLA 526

Query: 418 QYHR 421
              R
Sbjct: 527 DRDR 530


>gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
 gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
          Length = 629

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 161/425 (37%), Positives = 248/425 (58%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +S G ++ ++K L +   + +I+E+  S LRGRGG 
Sbjct: 142 FYKKQTRIVLKNCGHIDAEHIEEYLSIGGYEALEKALFDMKPEEVISEISESNLRGRGGG 201

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWS +     ++  Y+V N DE +PG   DR IM  +PH +IEG +IA++A+GA
Sbjct: 202 GFPTGYKWSQVAGQE-EKIRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGIMIAAYAVGA 260

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+++    GLLG +     +   + ++ GAGA++CGE +A
Sbjct: 261 QEGYIYVRAEYPLAISRLKRAIEQAEEYGLLGDHILGTDFSFHLHINKGAGAFVCGEGSA 320

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+G PT +NNVE+ A VP I+  GA W+ G G E + 
Sbjct: 321 LTASIEGNRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIITEGAQWFKGIGPEKSP 380

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G VN+   +E  M  T  E+I    GGI+G  +   AV  GG S  CL    
Sbjct: 381 GTKAFALTGSVNHTGLIEVPMGTTLREVIYDIGGGIKGDGE-FKAVQIGGPSGGCLITPH 439

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK+MG+ +G+  ++VMD ST +++       F ++ESCG+C PCREGT  
Sbjct: 440 L-DVNLDFDSLKKMGAMIGSGGLVVMDDSTCMVEVARFFMNFTQNESCGKCVPCREGTKR 498

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V+G  +  ++DLL E++  I    +C LG +AA P+   +K FR    E + 
Sbjct: 499 MLEILERIVEGKGKPEDLDLLEELATTITETALCGLGKSAALPVMSTLKLFRDEYVEHVV 558

Query: 418 QYHRC 422
              +C
Sbjct: 559 D-KKC 562


>gi|91776408|ref|YP_546164.1| NADH-quinone oxidoreductase, F subunit [Methylobacillus flagellatus
           KT]
 gi|91710395|gb|ABE50323.1| NADH dehydrogenase subunit F [Methylobacillus flagellatus KT]
          Length = 441

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 208/413 (50%), Positives = 265/413 (64%), Gaps = 6/413 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
              +      SL   +  G +  + +++ +      II++VK SGLRGRGGAGF TG+KW
Sbjct: 10  LRTIGHEHPASLETYLKLGGYAQLKRLVTEKVKATEIISQVKLSGLRGRGGAGFPTGLKW 69

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+   D   YLV N DE EPGT KDRDI+R+ PH LIEG  IA++ +GA   + Y+ 
Sbjct: 70  SFMPRYF-DGTKYLVCNTDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGARVGYNYIH 128

Query: 127 GEFIRERESLQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE  RE E  +AA+DE  A+G LG       +  D+   HG GAYICGEETAL+ES+EGK
Sbjct: 129 GEIWREYEIFEAALDEARAAGYLGECLFDTDFSFDLYAVHGYGAYICGEETALIESIEGK 188

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G++G PT VNN ES   +P I+  G   +   G  N+ GTK+FS+S
Sbjct: 189 KGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWIMEHGGQAFQELGVANSGGTKIFSVS 248

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E +M   F EL+    G  +G    L AVIPGG S   LPA  + GA MDY
Sbjct: 249 GHVEKPGNYEVNMGTPFTELLALAGGVWKG--RQLKAVIPGGPSTAILPASAIMGATMDY 306

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DGL + GS LG  ++IVMD +T ++K + RLS F+  ESCGQCTPCREGTGW+ RV++R+
Sbjct: 307 DGLSKAGSSLGAGSMIVMDETTCMVKTLKRLSYFFYEESCGQCTPCREGTGWLYRVIKRI 366

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           V G  +  ++DLL +VS NI GRTICALGDAAA P+   IK+FRP  E  I  
Sbjct: 367 VDGQGRMEDLDLLTDVSSNISGRTICALGDAAATPVLSFIKHFRPEFEYYIRH 419


>gi|284050504|ref|ZP_06380714.1| NADH dehydrogenase (quinone) [Arthrospira platensis str. Paraca]
 gi|291570291|dbj|BAI92563.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira
           platensis NIES-39]
          Length = 537

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 144/417 (34%), Positives = 241/417 (57%), Gaps = 6/417 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q +I     G +  + + + ++ G +  +  ++ +   + ++ E+  SGLRGRGGA
Sbjct: 112 FFSRQLKIVREFSGKIDPEKIGEYIAVGGYRALHHVIYDLTPEEVVAEITKSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+      Y++ NADE +PG   DR ++  +PH ++EG  IA +A+GA
Sbjct: 172 GYPTGLKWATVAKMPPG-QKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAGYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      LQ A+ +     +LGS       + +I +  GAGA++CGEETA
Sbjct: 231 TQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSINFNIDIRVGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+ G +G PR +PP+PA  GL+ CPT +NNVE++  +  I+R GA WY+  G E ++
Sbjct: 291 LIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNIAPIIRNGADWYNQIGTEKSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E  M IT  E++E+  GGI GG   + AV  GG S  C+PA Q
Sbjct: 351 GTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL-QVKAVQTGGPSGGCIPA-Q 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+ L ++GS +G+  ++VMD +T +++       F + E+CG+C PCR GT  
Sbjct: 409 FLDTPVDYESLTKLGSMMGSGGMVVMDENTSMVQVAQFYMEFCRGETCGKCIPCRVGTVQ 468

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           M +++ +L+   A   +++ L ++   +   ++C LG  A  P+   ++ F     E
Sbjct: 469 MYQLLTKLLNKQATPADLEKLKQLCDMVRATSLCGLGMTAPNPVTSTLQYFESEYLE 525


>gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 650

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 236/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + ++R  +  +  + L K    +I+ V  SGLRGRGGA
Sbjct: 138 FFRAQKRIVLRNCGVINPEEIGEYIARDGYFALADVVLNKKPQEVIDTVIKSGLRGRGGA 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW       +  P ++V NADE +PG   DR I+  +PH+++E   IA +  GA
Sbjct: 198 GFPTGRKWELAA-AQNVTPKFVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYCTGA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E L+ A+++   +GLLG       ++ DI +  GAGA++CGEETA
Sbjct: 257 GQGYIYVRAEYPIAVERLEIAINQAKEAGLLGRGIFGTTFEFDIDLRFGAGAFVCGEETA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+S+ G++G+PR +PP+PA  GL+G PT +NNVE+ A +P ILR G  WY G G  +++
Sbjct: 317 LLQSVMGQRGEPRPRPPYPAQEGLWGKPTLINNVETYANIPVILREGWEWYYGHGTASSK 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G+K+FS++G +N    +E  M  T   +     GG   G     AV  GG S  C+P   
Sbjct: 377 GSKVFSLAGKINNTGLIEVPMGTTLKTI-IFDIGGGITGGKKFKAVQTGGPSGGCIPEKY 435

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ LKE+GS +G+  +IVM     ++        F + ESCG+CTPCR GT  
Sbjct: 436 L-DLPVDYESLKEIGSIMGSGGMIVMSEDDCMVDIARFYLEFTQDESCGRCTPCRVGTKR 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++  +  G  +  ++DLL E++ +I   ++C LG  A  P+   +++FR      + 
Sbjct: 495 LLEILRIITGGKGEMEDLDLLEELAGDIRDASLCGLGQTAPNPVLSTLRHFRKEYIAHVM 554

Query: 418 QYHRCN 423
               C 
Sbjct: 555 D-KTCP 559


>gi|167836054|ref|ZP_02462937.1| NADH dehydrogenase I, F subunit [Burkholderia thailandensis MSMB43]
          Length = 436

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/416 (49%), Positives = 265/416 (63%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLTGEN-WRLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE   +G LG       +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGDKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGG--VRGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|298370378|ref|ZP_06981694.1| NADH oxidoreductase (quinone), F subunit [Neisseria sp. oral taxon
           014 str. F0314]
 gi|298281838|gb|EFI23327.1| NADH oxidoreductase (quinone), F subunit [Neisseria sp. oral taxon
           014 str. F0314]
          Length = 431

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 200/406 (49%), Positives = 260/406 (64%), Gaps = 6/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + +IL +   +  +I++VK SGLRGRGGAGF TG+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYSALRRILSENISQTDVIDQVKTSGLRGRGGAGFPTGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+ +  A+G LG N     ++ ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALAQARAAGFLGKNILGSDFEFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GLYG PTT+NN E+ A VP I+R G   ++  G  N  GTKLF ISGHV  P 
Sbjct: 198 PPFPASFGLYGKPTTINNTETFASVPFIVRDGGQAFADKGIPNAGGTKLFCISGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F E+++   G    G   L AVIPGGSS P LPA  M    MDYD + + G
Sbjct: 258 NYEVPLGTPFAEILKMAGGM--RGGKKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ A+IVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V+G  + 
Sbjct: 316 SMLGSGAIIVMDEDVCMVKALERLSYFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++DLL  V   + GRTICAL DAA +P++   K+FR      I+ 
Sbjct: 376 EDLDLLDSVGNQMAGRTICALADAAVFPVRSFTKHFREEFVHYIEH 421


>gi|319794663|ref|YP_004156303.1| NADH-quinone oxidoreductase, f subunit [Variovorax paradoxus EPS]
 gi|315597126|gb|ADU38192.1| NADH-quinone oxidoreductase, F subunit [Variovorax paradoxus EPS]
          Length = 446

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 219/418 (52%), Positives = 279/418 (66%), Gaps = 7/418 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
           + +I+  L G     L+D  +RG +  + KIL +G   D +I EVKASGLRGRGGAGF T
Sbjct: 25  EPQIYAGLNGTN-WRLADYEARGGYKALRKILTEGLTPDQVIAEVKASGLRGRGGAGFPT 83

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N+DE EPGTCKDRDI++  PH +IEG  IA++A+G    +
Sbjct: 84  GLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGISVGY 142

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE  +  +  + A++E  A+G LG       Y+  +   HG GAYICGEETALLES
Sbjct: 143 NYIHGEIFQSYDRFEEALEEARAAGYLGDKIMGSTYNFQLHAAHGFGAYICGEETALLES 202

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   Y   G+ NN GTK+
Sbjct: 203 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIINNGGPAYLECGKPNNGGTKI 262

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           +S+SG V  P   E  M   F +L+E  CGG+R G   L AVIPGGSS P LPA  M   
Sbjct: 263 YSVSGDVELPGNYEVPMGTPFSKLLE-LCGGVRKG-RTLKAVIPGGSSSPVLPADIMMAC 320

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW+ RV
Sbjct: 321 TMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLKRLSYFYMHESCGQCTPCREGTGWLYRV 380

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++R+  G  +  ++DLL  V+ NI+GRTICALGDAAA P++ +IK+FR   E  I  Y
Sbjct: 381 VDRIHNGQGRATDMDLLNSVADNIQGRTICALGDAAAMPVRAMIKHFRHEFEALIPGY 438


>gi|237811587|ref|YP_002896038.1| NADH oxidoreductase (quinone), f subunit [Burkholderia pseudomallei
           MSHR346]
 gi|237505537|gb|ACQ97855.1| NADH oxidoreductase (quinone), f subunit [Burkholderia pseudomallei
           MSHR346]
          Length = 436

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 265/416 (63%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + YV
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYV 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE   +G LG       +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGEKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|254821139|ref|ZP_05226140.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium
           intracellulare ATCC 13950]
          Length = 446

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 203/414 (49%), Positives = 269/414 (64%), Gaps = 8/414 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L      G ++ + K L    D +I  VK SGLRGRGGAGFSTG KWSF+P+  + 
Sbjct: 25  ESWTLETYRRHGGYEAMKKALAMEPDAVIGVVKDSGLRGRGGAGFSTGTKWSFIPQGDTG 84

Query: 76  ---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
              +PHYLVVNADESEPGTCKD  +M   PH L+EG +IA++AI A+ AFIYVRGE +  
Sbjct: 85  AAAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGVIIAAYAIRANHAFIYVRGEVLPV 144

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQ AV E YA+G LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 145 LRRLQNAVAEAYAAGYLGRDINGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRL 204

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P
Sbjct: 205 RPPFPAVAGLYGCPTVINNVETIASVPSIIGNGVDWFRSMGSEKSPGFTLYSLSGHVTRP 264

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+   
Sbjct: 265 GQYEAPLGITLRELL-AYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGGA 321

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 322 GSMLGTKALEIFDETTCVVRAVQRWTYFYKHESCGKCTPCREGTFWLDKIYERLEAGTGT 381

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             ++D L ++S +I G+  CALGD AA P+   I+ FR      + +   C F 
Sbjct: 382 HEDLDKLLDISDSILGKAFCALGDGAASPVMSSIQYFRDEYVAHV-EGGGCPFD 434


>gi|300691030|ref|YP_003752025.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           PSI07]
 gi|299078090|emb|CBJ50733.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           PSI07]
          Length = 431

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 209/421 (49%), Positives = 274/421 (65%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFST 62
           Q  I   L G     L D + RG +  + +IL +    + II +VKASGLRGRGGAGF T
Sbjct: 10  QPLILAGLNG-DNWHLEDYVKRGGYQQLKRILTEKISPEQIIADVKASGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N+DE EPGT KDRDI+R+ PH LIEG  I  +A+G    +
Sbjct: 69  GLKWSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRYNPHALIEGMAIGGYAMGITVGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE     +  + A++E  A+GLLG N    G++  +  HHG GAYICGEETALLES
Sbjct: 128 NYIHGEIWDVYKRFEEALEEARAAGLLGDNILGSGFNFQLHAHHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN G+K+
Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLSIGPDNYLKMGKPNNGGSKI 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+SG V  P   E  +   F +L+E   G    G   + AVIPGGSS P +P   M   
Sbjct: 248 FSVSGDVERPGNYEIPLGTPFSKLLELAGGM--RGGKKIKAVIPGGSSAPVVPGDVMMQT 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYDG+ + GS LG+ AVIVMD +  ++K++ RLS FY  ESCGQCTPCREGTGW+ RV
Sbjct: 306 DMDYDGIAKTGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRV 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++R+  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       + ++ +
Sbjct: 366 VDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKQ 424

Query: 422 C 422
           C
Sbjct: 425 C 425


>gi|226355364|ref|YP_002785104.1| NADH dehydrogenase (quinone) subunit F [Deinococcus deserti VCD115]
 gi|226317354|gb|ACO45350.1| putative NADH dehydrogenase (quinone), subunit F (NADH-quinone
           oxidoreductase, subunit F) [Deinococcus deserti VCD115]
          Length = 446

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 197/419 (47%), Positives = 263/419 (62%), Gaps = 11/419 (2%)

Query: 3   TDQDRIFTNLYGL----QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
               R    LY         +L+     G ++ V +  E G D +I+EVK SGLRGRGGA
Sbjct: 14  AKDPRFAPTLYAHVGQPDSWTLAYYRDNGGYEAVRRAFEMGPDAVIDEVKKSGLRGRGGA 73

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF+TG+KWSFMP     R HY++ NADESEPG+ KDR ++  +PH LIEG +IA +A+ A
Sbjct: 74  GFATGLKWSFMPLND-GRKHYVICNADESEPGSFKDRYLLSEDPHQLIEGMLIAGYAMRA 132

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IY+RGE++   E +  A+ E  A+GLLG N    G+D D+ VH GAGAYICGEETA
Sbjct: 133 TVGYIYIRGEYVHAAERVWQAIHEARAAGLLGRNVLGSGFDFDLQVHRGAGAYICGEETA 192

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG +  PRLKPPFPA  GLYG PTT+NNVE+      IL+ G+ W++G G E ++
Sbjct: 193 LMNSLEGLRANPRLKPPFPAAAGLYGLPTTINNVETFCAATQILKFGSEWHAGMGTERSK 252

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-G 296
           G KLF ISG V  P   E  +  TF ELI    GG     + + A+IPGGSS P LP   
Sbjct: 253 GMKLFQISGPVARPGVYELPLGTTFRELIYDWAGGP---LEEMKAIIPGGSSCPMLPWSD 309

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-T 355
           ++    MDY+ +   GS LGT  V ++ R+  I+ A W L  FY HESCG+CTPCREG +
Sbjct: 310 RILDTPMDYEAIAAAGSMLGTGGVTLIPRADCIVNATWNLVRFYAHESCGKCTPCREGIS 369

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           GWM+++ E+LV+G  Q  ++ L+ ++S+NI GR+ CAL DA   P+   I  FR   ++
Sbjct: 370 GWMVKMYEKLVRGHGQPGDVQLILDMSENIGGRSFCALADACLGPVLSSISLFRDEYDQ 428


>gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii DSM 519]
 gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii]
          Length = 625

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 161/426 (37%), Positives = 248/426 (58%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + +S+ ++   ++ + + + EK    +I+E+K SGLRGRGG 
Sbjct: 139 FYKKQKRIALRNCGLINPELISEYIACRGYEAIGRCITEKTPQDVIDEIKLSGLRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG+KW F  K  SD   Y+V NADE +PG   DR I+  +PH++IE   +A +++GA
Sbjct: 199 GFSTGLKWEFTKKPVSDI-KYIVCNADEGDPGAFMDRSILEGDPHSIIEAMAVAGYSVGA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F+Y+R E+    + L+ A++E    GLLG N     +  DI + +GAGA++CGEETA
Sbjct: 258 SKGFVYIRAEYPLAIKRLRHAINEAREHGLLGDNIMGTSFSFDIEIKYGAGAFVCGEETA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+P  KPPFPA  GL+G PT VNNVE++A VP IL  GASW++  G E ++
Sbjct: 318 LIHSIEGQRGEPTTKPPFPAESGLWGKPTCVNNVETLANVPAILLEGASWFNAIGSETSK 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M IT  E+I +  GGI+ G +   AV  GG S  C+   Q
Sbjct: 378 GTKVFALAGKINNVGLVEVPMGITLREIIYEIGGGIKDGKE-FKAVQTGGPSGGCITKDQ 436

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 437 L-DVKIDYESLGAIGSMMGSGGMIVMDEDNCMVDIAKFYLEFTVEESCGKCTPCRVGNKR 495

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ ++ +G     ++D + E+++ I+  ++C LG  A  P+   +  F       + 
Sbjct: 496 LHEMLTKISEGKGTMEDLDAMKELAQTIKDTSLCGLGQTAPNPVLSTLNFFGDEYRAHV- 554

Query: 418 QYHRCN 423
           Q   C 
Sbjct: 555 QDKICP 560


>gi|317051066|ref|YP_004112182.1| NADH-quinone oxidoreductase subunit F [Desulfurispirillum indicum
           S5]
 gi|316946150|gb|ADU65626.1| NADH-quinone oxidoreductase, F subunit [Desulfurispirillum indicum
           S5]
          Length = 428

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 217/423 (51%), Positives = 282/423 (66%), Gaps = 5/423 (1%)

Query: 4   DQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            + ++ +  YG+    +L  +   G +  +DK      D I+ EVK SGLRGRGGAGF  
Sbjct: 7   KEVKVLSAKYGIANSFTLDVARQHGGYAQIDKAFSMSPDQIVEEVKQSGLRGRGGAGFPA 66

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKWSF+PK  +D+P YL VN+DESEPGT KDR I+  +PH LIEG +I  +AI +H A+
Sbjct: 67  GMKWSFLPK-ETDKPIYLAVNSDESEPGTFKDRQILEKDPHMLIEGIIITCYAIKSHDAY 125

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+RGE++R+ E LQ A+DE YA+GLLG N+   GY VD+ VH GAGAYICGEE ALLES
Sbjct: 126 IYIRGEYVRQAEGLQRAIDEAYAAGLLGENACGKGYRVDVTVHRGAGAYICGEEMALLES 185

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGKKGQPR+KPPFPA VGLYG PT +NNV++IA VP I+  GA+ Y  FG E + GT L
Sbjct: 186 IEGKKGQPRVKPPFPALVGLYGAPTIINNVQTIASVPYIIEHGAAGYRQFGTEKSPGTFL 245

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ISGHV  P   E  + ++  E I+K  GGI  G   L AVIPGGSS P L A  +   
Sbjct: 246 FGISGHVEKPGVYETELGVSMKEFIDKMAGGIWKGRK-LKAVIPGGSSCPVLNAEDVEKC 304

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ L E GS LG+  +IV D  T +++ +  L  FY+HESCGQCTPCREGTGW+ ++
Sbjct: 305 TLDYESLVENGSMLGSGGMIVSDDQTCMVRNLKNLLYFYQHESCGQCTPCREGTGWIYKI 364

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +  +  G  +  ++DLL E+  N+EG+T+C L  AAA P +  I  FR   EE I +  +
Sbjct: 365 VSDIEDGKGKMEDLDLLLEICDNMEGKTVCVLSGAAAMPCRSHILKFRQEFEEHI-KLGK 423

Query: 422 CNF 424
           C F
Sbjct: 424 CPF 426


>gi|313673509|ref|YP_004051620.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940265|gb|ADR19457.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 536

 Score =  475 bits (1223), Expect = e-132,   Method: Composition-based stats.
 Identities = 153/423 (36%), Positives = 245/423 (57%), Gaps = 6/423 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
             Q  +  N   +  +S+ + +    +    K L E   D +INEV  SGLRGRGG G+ 
Sbjct: 107 KQQKIVLKNCGKIDPESIEEYILNEGYKAFLKCLNELSPDEVINEVIKSGLRGRGGGGYP 166

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWS + K+ S    Y+V NADE +PG   DR I+  +PH +IEG +IA++A+GA+  
Sbjct: 167 TGLKWSTVGKIQSPI-KYVVCNADEGDPGAFMDRAILESDPHKVIEGMLIAAYAVGANRG 225

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++YVR E+    + L+ A+       LLG+N     ++ ++ V  GAGAY+CGEETAL+ 
Sbjct: 226 YVYVRAEYPLAIKRLKTAIKNAERFNLLGANIAGTTFNFNLEVRLGAGAYVCGEETALIA 285

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGKKG PR +PP+PA  G+   PT +NNVE+ A + TI+  G+ W++  G + ++GTK
Sbjct: 286 SIEGKKGTPRPRPPYPAESGIKNYPTLINNVETYANISTIINNGSEWFASIGTDKSKGTK 345

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F++SG++     VE  M I   +LI +  GGI    +   AV  GG S  C+P+  +  
Sbjct: 346 VFALSGNIKNTGLVEVPMGIKLYDLIFEIGGGIPNDKE-FKAVQTGGPSGGCIPSEYL-N 403

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+ L  +GS +G+  +IVMD +T ++        F K ESCG+C PCR GT  +  
Sbjct: 404 TSVDYESLTHLGSIMGSGGMIVMDENTCMVDMAKFFIDFCKSESCGKCAPCRNGTVQLYE 463

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++++ KG   +R++  + +++  ++  ++C LG +A  P+    K F+    E +   +
Sbjct: 464 ILDKITKGEGNERDLITMIKIANTMKKTSLCGLGQSAPNPVLSAFKYFKDEFYEHVLHRY 523

Query: 421 RCN 423
            C 
Sbjct: 524 -CP 525


>gi|309791453|ref|ZP_07685958.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6]
 gi|308226489|gb|EFO80212.1| NADH dehydrogenase (quinone) [Oscillochloris trichoides DG6]
          Length = 529

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 157/421 (37%), Positives = 253/421 (60%), Gaps = 6/421 (1%)

Query: 1   MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T Q   +  N   +  + + + ++ G + ++ + + E     +I+E+  SGLRGRGGA
Sbjct: 112 FFTRQFPIVRKNAGKIDPERIEEYIAAGGYRSLYRAINEMTPAEVIDEITRSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KWS + K   +   Y+V N DE +PG   DR ++  +PH ++EG  IA++AIGA
Sbjct: 172 GYPTGLKWSTVAKSRGE-RKYVVCNGDEGDPGAFMDRSVLESDPHLVLEGMCIAAYAIGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVRGE+    + LQ A+++    GLLGS      +D  + +  GAGA++CGEETA
Sbjct: 231 DQGYIYVRGEYPFAIQRLQKAINQAKKFGLLGSQIFDSTFDFRVDIRVGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++GQPR +PP+PA  GL+G PT +NNVE+ A + +I+  G  WY+  G E +R
Sbjct: 291 LLASIEGRRGQPRPRPPYPAESGLWGKPTLINNVETFANIASIIEHGPDWYASIGTETSR 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G ++    +E  M IT  E++ +  GG   G + + AV  GG S  C+PA  
Sbjct: 351 GTKVFALTGKIHNTGLIEVPMGITLREIVHQLGGGGHSGSE-VKAVQTGGPSGGCIPAS- 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L ++GS +G+  ++VMD ST++++       F K ESCG+C PCR GT  
Sbjct: 409 LFDTPVDYESLAQVGSIMGSGGMVVMDNSTNMVELAKFYMEFCKDESCGKCVPCRVGTVQ 468

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R++E++  G   + +ID L E+ + +   ++C LG +A  P+   +K F    E  I+
Sbjct: 469 IHRLLEKITAGQGSQADIDQLQELCQLLRNTSLCGLGQSAPNPVMSTLKYFTEEYEHLIE 528

Query: 418 Q 418
           +
Sbjct: 529 R 529


>gi|189426182|ref|YP_001953359.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
 gi|189422441|gb|ACD96839.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
          Length = 590

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 242/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
            +  Q RI  +    +  +SL   ++   +  ++K ++      +  EVK SGLRGRGG 
Sbjct: 106 FVDAQRRIVMSGCGQIDAESLDAYLATDGFKAIEKCIKTMKPAEVTEEVKKSGLRGRGGG 165

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSF          Y++ NADE +PG   DR I+  +P+ LIEG +IA +AIGA
Sbjct: 166 GFPTGLKWSFCA-ASPGHHKYIICNADEGDPGAFMDRSILEGDPYCLIEGMMIAGYAIGA 224

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + LQ A+D CY  G LG N   LG++ D+ +  GAGA++CGEETA
Sbjct: 225 QFGYVYVRAEYPLAIDRLQKAIDVCYEKGYLGKNCMGLGFEYDMRIKKGAGAFVCGEETA 284

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+  P+ +NNVE+ A V  I+  GA WY+  G E  +
Sbjct: 285 LMASIEGERGMPRPRPPFPAVKGLWQHPSNINNVETFANVRHIINNGAEWYAAIGTETTK 344

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V +   VE    +   E+I   CGGI        AV  GG S  C+PA  
Sbjct: 345 GTKIFAVTGKVKHTGLVEVPAGMKVREVIYDVCGGILNNRK-FKAVQAGGPSGGCIPAE- 402

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VMD +T ++        F + ESCG+C PCR G   
Sbjct: 403 ILDTPVDYDSLIKAGAMMGSGGLVVMDETTCMVDVSKFFLTFTRMESCGKCVPCRIGLKA 462

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+ +G  ++ +++ L ++   I+  ++C LG  A  P+   I+ FR   E  I 
Sbjct: 463 MLDILIRITEGNGREGDLETLIDLGTTIKQASLCGLGQTAPNPVLSTIRYFRDEYEAHIT 522

Query: 418 QYHRCN 423
              RC 
Sbjct: 523 D-KRCP 527


>gi|209525022|ref|ZP_03273566.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328]
 gi|209494431|gb|EDZ94742.1| NADH dehydrogenase (quinone) [Arthrospira maxima CS-328]
          Length = 537

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 144/417 (34%), Positives = 240/417 (57%), Gaps = 6/417 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q +I     G +  + + + ++ G +  +   + +   + ++ E+  SGLRGRGGA
Sbjct: 112 FFSRQLKIVREFSGKIDPEKIGEYIAVGGYRALHHAIYDLTPEEVVTEITKSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+      Y++ NADE +PG   DR ++  +PH ++EG  IA +A+GA
Sbjct: 172 GYPTGLKWATVAKMPPG-QKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAGYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      LQ A+ +     +LGS       D +I +  GAGA++CGEETA
Sbjct: 231 TQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSIDFNIDIRVGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+ G +G PR +PP+PA  GL+ CPT +NNVE++  +  I+R GA WY+  G E ++
Sbjct: 291 LIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNIAPIIRNGADWYNQIGTEKSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E  M IT  E++E+  GGI GG   + AV  GG S  C+PA  
Sbjct: 351 GTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL-QVKAVQTGGPSGGCIPADF 409

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  ++VMD +T +++       F + E+CG+C PCR GT  
Sbjct: 410 L-DTPVDYESLTRLGSMMGSGGMVVMDENTSMVQVAQFYMEFCRGETCGKCIPCRVGTVQ 468

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           M +++ +L+   A   +++ L ++   ++  ++C LG  A  P+   ++ F     E
Sbjct: 469 MYQLLTKLLNKQATSADLEKLKQLCDMVKATSLCGLGMTAPNPVTSTLQYFESEYLE 525


>gi|116619257|ref|YP_821413.1| NADH-quinone oxidoreductase subunit F [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222419|gb|ABJ81128.1| NADH-quinone oxidoreductase, F subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 437

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 190/423 (44%), Positives = 265/423 (62%), Gaps = 5/423 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           + R+ T  +G     ++   ++   +    K  +   + II EVK S LRGRGGAGF TG
Sbjct: 10  ETRVLTRRFGKPNSAAIEGYLADDGYQGFLKAAKMKPEEIIEEVKVSNLRGRGGAGFPTG 69

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+P+  S +P Y+VVN DESEPGTCKDR ++ ++PH LIEG +IA  ++ AH  ++
Sbjct: 70  MKWSFVPRT-SPKPKYIVVNGDESEPGTCKDRVLIENDPHQLIEGVLIAGLSVDAHAGYV 128

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE+    + ++ A+ E YA G LG N    G+D D+  H GAGAY CGEE+ALLESL
Sbjct: 129 YIRGEYRYLIDIMEKAIAEAYAKGWLGKNIQGTGFDFDLYAHTGAGAYECGEESALLESL 188

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G PR++PPFPA  G + CPT +NNVE+   VP ILR G + ++  G     GTK+ 
Sbjct: 189 EGKRGIPRIRPPFPAVAGAFQCPTILNNVETFCAVPAILRDGGAAFAALGIPKAGGTKMT 248

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            ++GHVN P   E  +     ++IE+  GG+R     L A IPGGSS P L A ++ GA 
Sbjct: 249 CLTGHVNKPGVYELKLGFPVKQMIEEVGGGMR-NGKKLKAFIPGGSSCPVLTAAELEGAT 307

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MDYD +    S LG+  VI+MD  T ++KA  R+  FY HESCG C PCREGT W+ +++
Sbjct: 308 MDYDSMASRKSMLGSGGVIIMDEDTCMVKAALRIMRFYAHESCGWCIPCREGTTWLKKIL 367

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R   G   + +I+L+ +++KN+ GRT C LGDAAA P   +++ FR   E+ +     C
Sbjct: 368 TRFHDGQGTRTDINLIGDIAKNMLGRTFCPLGDAAAMPTISIVEKFREEFEDHLA-GKPC 426

Query: 423 NFQ 425
            F+
Sbjct: 427 RFE 429


>gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus torques L2-14]
          Length = 622

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 158/425 (37%), Positives = 241/425 (56%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + + D+M+ G +++ +K   E   + +I  V  +GLRGRGGA
Sbjct: 136 FYAKQTRLVLRNCGHIDAEHIEDAMAVGAYESFEKAVFEMTPEAVIKTVTDAGLRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS +     ++  Y+V N DE +PG   DR +M  +PH +IEG ++A++A+ A
Sbjct: 196 GFPAGRKWSQVASQP-EKIRYVVCNGDEGDPGAFMDRSVMEGDPHRMIEGMMLAAYAVQA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      LQ A+ +    GLLG N    G+   + ++ GAGA++CGE +A
Sbjct: 255 QEGYIYVRAEYPLAVRRLQIAIAQAEEKGLLGDNILGTGFSFKLHINRGAGAFVCGEGSA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+  PT +NNVE+ A +P I++ GA WYS  G   + 
Sbjct: 315 LTASIEGKRGMPRVKPPRTVEQGLWEKPTVLNNVETYANIPMIIKNGADWYSRIGTPQSP 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G+V     +E  M I+  E+I    GGI+       AV  GG S  CL   Q
Sbjct: 375 GTKAFALTGNVKNTGLIEVPMGISLREIIFDIGGGIKDD-KGFKAVQIGGPSGGCLVESQ 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  + MD+D L ++G+ +G+  ++VMD  T +++       F + ESCG+C PCREGT  
Sbjct: 434 L-DSKMDFDSLSKIGAMIGSGGLVVMDEDTCMVEVARFFMNFTQRESCGKCVPCREGTKR 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  +  ++D L E++  IE   +C LG +A  P+   I  FR   EE I 
Sbjct: 493 MLEILERIVAGNGEMSDLDELEELADMIENTALCGLGKSAPKPVVSTIHAFRKEYEEHII 552

Query: 418 QYHRC 422
              +C
Sbjct: 553 D-KKC 556


>gi|53718852|ref|YP_107838.1| NADH dehydrogenase I chain F [Burkholderia pseudomallei K96243]
 gi|76811124|ref|YP_332849.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1710b]
 gi|126454273|ref|YP_001065582.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1106a]
 gi|167737857|ref|ZP_02410631.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 14]
 gi|167815041|ref|ZP_02446721.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 91]
 gi|167823457|ref|ZP_02454928.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 9]
 gi|167845009|ref|ZP_02470517.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei B7210]
 gi|167893550|ref|ZP_02480952.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 7894]
 gi|167901996|ref|ZP_02489201.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei NCTC
           13177]
 gi|167910232|ref|ZP_02497323.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei 112]
 gi|217419390|ref|ZP_03450896.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           576]
 gi|226195331|ref|ZP_03790920.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|242317334|ref|ZP_04816350.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1106b]
 gi|254181182|ref|ZP_04887779.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1655]
 gi|254190545|ref|ZP_04897052.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195194|ref|ZP_04901623.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           S13]
 gi|254260557|ref|ZP_04951611.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1710a]
 gi|52209266|emb|CAH35211.1| NADH dehydrogenase I chain F [Burkholderia pseudomallei K96243]
 gi|76580577|gb|ABA50052.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1710b]
 gi|126227915|gb|ABN91455.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1106a]
 gi|157938220|gb|EDO93890.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169651942|gb|EDS84635.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           S13]
 gi|184211720|gb|EDU08763.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1655]
 gi|217396694|gb|EEC36710.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           576]
 gi|225932533|gb|EEH28531.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|242140573|gb|EES26975.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1106b]
 gi|254219246|gb|EET08630.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           1710a]
          Length = 436

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 204/416 (49%), Positives = 265/416 (63%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE   +G LG       +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGEKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|212696952|ref|ZP_03305080.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676040|gb|EEB35647.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 526

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 147/426 (34%), Positives = 235/426 (55%), Gaps = 6/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R +  N   +   ++ + +S+  +  ++K + +  R  II+ +K SGLRGRGGA
Sbjct: 40  FYQNQTRLVLKNCGIIDPNNIDEYISQDGYFALNKAIFDLDRKEIIDIIKDSGLRGRGGA 99

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    K  +D   Y++ NADE +PG   DR ++  +PH+++E   I + AIG+
Sbjct: 100 GFPTGRKWEAAFKQDTDI-KYIICNADEGDPGAFMDRSVLEFDPHSVLEAMAICARAIGS 158

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+ +  +SLQ A+ +     LLG N     +  DI +  GAGA++CGE TA
Sbjct: 159 KQGYIYVRAEYPKAVKSLQNAIKQAREYNLLGENIMGSDFSFDIDLRLGAGAFVCGEGTA 218

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G PR K       GL+G PT +NNVE+ A +  I+ +G+SW+  FG E + 
Sbjct: 219 LMESIEGKRGMPRNKEFRTTVKGLWGKPTVINNVETFANIAQIINKGSSWFRSFGTEKSP 278

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     VE  M  + ++++     GI+       AV  GG S  C+P   
Sbjct: 279 GTKVFALVGKVKESGLVEVEMGTSINKIVYDIGLGIQNDKKA-KAVQTGGPSGGCIPTK- 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +     D++ LKE+GS +G+  ++VMD    ++        F   ESCG+CTPCR G   
Sbjct: 337 LFDTACDFESLKEIGSIMGSGGMVVMDEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKR 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++ L KG A +  ++ L E+SK +   ++C LG ++  PI   +  F+   +  + 
Sbjct: 397 LFEMLDDLTKGKANEETLEKLEELSKIVSETSLCGLGQSSPNPIISTMYYFKDEYQAHVG 456

Query: 418 QYHRCN 423
           +   C 
Sbjct: 457 ENKTCP 462


>gi|288941582|ref|YP_003443822.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180]
 gi|288896954|gb|ADC62790.1| NADH dehydrogenase (quinone) [Allochromatium vinosum DSM 180]
          Length = 538

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 149/419 (35%), Positives = 238/419 (56%), Gaps = 6/419 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q RI     G +   SL   ++ G +  + + L E     ++ EV  SGLRGRGG 
Sbjct: 119 FFSRQQRIVLEHSGLIDPDSLRGYIAVGGYAALVRALTEMTPADVLREVTTSGLRGRGGG 178

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KWS + K+      Y+V NADE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 179 GYPTGLKWSTIAKMPPG-QKYVVCNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGA 237

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    E L+ A+ +   +G LG   +   +  ++ +  GAGA++CGEETA
Sbjct: 238 SKGYVYVRAEYPLAVERLETAIRKAKRAGFLGAKVADTQFAFEVEIRLGAGAFVCGEETA 297

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +GQPR +PP+PA  GL+GCPT +NNVE+ A +  I+R G  W++  G E ++
Sbjct: 298 LMASIEGLRGQPRPRPPYPAESGLWGCPTLINNVETFANIAPIIREGGDWFAAIGTEGSK 357

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M  +  ++IE   GGI        AV  GG S  C+P   
Sbjct: 358 GTKVFALAGKIKNTGLIEVPMGTSLRDIIEVIGGGIP-DGRAFKAVQTGGPSGGCIPEAH 416

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK +G+ +G+  +IVMD ++ ++        F   ESCG+C PCR GT  
Sbjct: 417 L-DIPVDYDSLKTLGTIMGSGGLIVMDETSCMVDVARFFMEFCMSESCGKCIPCRAGTWQ 475

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M  +++ L KG   + ++ LL ++   +   ++C LG  A  P+   ++ FR   E ++
Sbjct: 476 MHALLDTLTKGRGTRADLALLEDLCDVVRATSLCGLGQTAPNPVLSTLRYFRDEYEAKL 534


>gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
 gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
          Length = 596

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 155/428 (36%), Positives = 241/428 (56%), Gaps = 9/428 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q RI   N   +  +++ + ++R  +  + K+L    D ++ E+  SGLRGRGG G
Sbjct: 111 FYKPQLRIALRNCGFIDPENIGEYIARDGYAALAKVLGMQPDHVLQEIIDSGLRGRGGGG 170

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW       +D   Y+V NADE +PG   DR I+  +PH+++E   I  +  GA 
Sbjct: 171 FPTGLKWKITRDAKAD-RKYVVCNADEGDPGAFMDRSILEGDPHSILEAMAINGYCTGAS 229

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
              IY+R E+    E L+ A+++    GLLG++    G+  DI + +GAGA++CGEETAL
Sbjct: 230 HGLIYIRAEYPLAIERLRRAIEQAREYGLLGNDILGSGFSFDIELRYGAGAFVCGEETAL 289

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG++G+P +KPP+P+  G  G PT VNNVE+ A +P IL RGA W+S  G E ++G
Sbjct: 290 IHSMEGRRGEPTVKPPYPSESGYKGYPTNVNNVETYANIPPILLRGAEWFSSIGTEKSKG 349

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F+++G VN    +E  M  T  E+I +  GGI+       AV  GG S  CL    +
Sbjct: 350 TKVFALAGKVNNVGLIEVPMGTTLREVIFEIGGGIK-NGKKFKAVQTGGPSGGCLTEKHL 408

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   +
Sbjct: 409 -DTPIDYDNLLASGSMMGSGGMIVMDEDDCMVSVAKFYLEFTVDESCGKCTPCRIGNKRL 467

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +++R+ +G+ +  ++D L  +++ I   ++CALG  A  P+   ++NF       +  
Sbjct: 468 LEILDRITRGLGRDEDLDELQNLARVIRDSSLCALGQTAPNPVLSTLENFWDEYVAHVRD 527

Query: 419 Y----HRC 422
           +    HRC
Sbjct: 528 HHCTAHRC 535


>gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
          Length = 626

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 161/426 (37%), Positives = 238/426 (55%), Gaps = 8/426 (1%)

Query: 1   MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
           +  +QD  I   +   +  S+ D ++RG ++++ K L     + II  VKASGLRGRGG 
Sbjct: 141 LFKNQDFYIMEAIGESECDSIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   ++V N DE +PG   +R ++  +PH ++EG +IA +A+GA
Sbjct: 201 GFPTGLKWEFTRKAQGDI-KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+    +  + A+++    GLLG N    G+  D+ V  GAGA++CGEETA
Sbjct: 260 QKGYAYIRAEYPFAVKMFKKAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EGK+G PR KPPFPA  GL+G PT +NNVE+ A +P ILR G   Y   G EN+ 
Sbjct: 320 LLASIEGKRGMPRPKPPFPAQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E     T  ++I   CGG     +   AV  GG S  CL    
Sbjct: 380 GTKMFSVAGPLKATGIIEVEFGTTLRDIIYNICGGF-VEGEEFKAVQIGGPSGACLSEDF 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK+  + +G+  ++V+ + T +++       F K ESCG+C PCREGT  
Sbjct: 439 I-DMPLDYDTLKKADAMVGSGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQ 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
              ++E+   G A   ++  L  +SK I+  ++C LG  A  PI   +K FR      I+
Sbjct: 498 AYNILEKFTHGKATYEDLKALEHLSKTIKTASLCGLGKTAPNPILSTLKLFREEYIAHIE 557

Query: 418 QYHRCN 423
               C 
Sbjct: 558 --GECP 561


>gi|116329149|ref|YP_798869.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116330243|ref|YP_799961.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121893|gb|ABJ79936.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123932|gb|ABJ75203.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 444

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 196/411 (47%), Positives = 266/411 (64%), Gaps = 6/411 (1%)

Query: 13  YGLQGKS--LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           Y    +S  L    S   ++ + K L    D II EVK SGLRGRGGAGF TG+KWSF+P
Sbjct: 10  YIDNPQSAKLEFYESVHGYEGLKKALSMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIP 69

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K  S +P Y++ NADE EPGT KDR ++ + PH +IEG +I + AIG++  F Y+RGEF 
Sbjct: 70  KDVS-KPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIGAKAIGSNKGFFYIRGEFQ 128

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
           +   ++QAA+DE Y+ G LG N     +D D+I++ GAGAYICGEETAL+ SLEG++G P
Sbjct: 129 KGARTMQAAIDEAYSKGYLGKNILGTDFDFDLILYEGAGAYICGEETALINSLEGRRGHP 188

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RLKPPFPA  GLY  PT VNNVE+ + +P IL +GA WYS  G E + GT+LFS+SGHV 
Sbjct: 189 RLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVK 248

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P   E  +     EL+   CGGI      L A+IPGGSSVP L A + + A MD++ + 
Sbjct: 249 RPGVYEIELGTPLLELVNDLCGGIVDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMA 307

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
              + LG+ AVIV+    DI++  +R + FY HESCGQCTPCREGT W+  ++ ++ +G 
Sbjct: 308 AHKTMLGSGAVIVLAEGADIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGE 367

Query: 370 AQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
              ++IDL+  +S+N+E G TIC L DA    ++  I+ FR   + R+ + 
Sbjct: 368 GTTQDIDLILSLSRNMEGGTTICPLSDACVGAVRPAIQKFRSEFDARLKEK 418


>gi|332968230|gb|EGK07307.1| NADH-quinone oxidoreductase subunit F [Kingella kingae ATCC 23330]
          Length = 433

 Score =  475 bits (1222), Expect = e-132,   Method: Composition-based stats.
 Identities = 205/406 (50%), Positives = 259/406 (63%), Gaps = 6/406 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
            +L+   +RG +  + KIL +   +  II+E+KASGLRGRGGAGF TG+KWSFMP+    
Sbjct: 21  WTLAAYQARGGYQALRKILTEKIAQTDIIDEIKASGLRGRGGAGFPTGLKWSFMPRSFPG 80

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V N DE EPGT KDRDI+   PH LIEG +IA +A+GA   + Y+ GE     + 
Sbjct: 81  -AKYVVCNTDEGEPGTFKDRDIIMFNPHALIEGMIIAGYAMGAEAGYNYIHGEIFEGFQL 139

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            + A+ E   +G LG N     +  ++  HHG GAYICGEETALLESLEGKKGQPR KPP
Sbjct: 140 FEKALQEARDAGFLGKNIMGSEFSFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA+ GLYG PTT+NN E+ A VP I+R G   ++  G E+  GTKLFSISGHV  P   
Sbjct: 200 FPASFGLYGKPTTINNTETFASVPFIIRDGGKTFADKGIESAGGTKLFSISGHVERPGNY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E ++   F EL+    G    G   L AVIPGGSS P LPA  M    MDYD + + GS 
Sbjct: 260 EVALGTPFSELLAMAGG--VRGGKKLKAVIPGGSSAPVLPADIMMSCNMDYDSIAKAGSM 317

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AVIVMD    ++KA+ RL+ FY  ESCGQCTPCREGTGW+ RV+ R+  G  +  +
Sbjct: 318 LGSGAVIVMDEDVCMVKALERLAYFYHEESCGQCTPCREGTGWLYRVVHRIATGKGRPDD 377

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++LL  V  N+ GRTICAL DAA +P++   K+FR   E  I    
Sbjct: 378 LELLDSVGNNMAGRTICALADAAVFPVRSFTKHFREEFEHYIKHGK 423


>gi|72163089|ref|YP_290746.1| NADH-quinone oxidoreductase, F subunit [Thermobifida fusca YX]
 gi|71916821|gb|AAZ56723.1| NADH-quinone oxidoreductase, F subunit [Thermobifida fusca YX]
          Length = 438

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 193/400 (48%), Positives = 249/400 (62%), Gaps = 5/400 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L      G ++ + K L    D I+  VKASGLRGRGGAGF TGMKW F+PK  + 
Sbjct: 16  DSYTLDAYRENGGYEALRKALTMEPDAIVEMVKASGLRGRGGAGFPTGMKWGFLPKD-NP 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +P YLVVNADESEPGTCKD  +M   PH LIEG +I+++AI +H AFIYVRGE +     
Sbjct: 75  KPRYLVVNADESEPGTCKDIPLMMANPHALIEGVIISAYAINSHQAFIYVRGEVLHVIRR 134

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ AV E Y +GLLG +    G+D+D++VH GAGAYICGEETALL+SLEG +GQPRLKPP
Sbjct: 135 LRHAVAEAYEAGLLGKDILGSGFDLDVVVHAGAGAYICGEETALLDSLEGYRGQPRLKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVESIA VP+I+  GA W+   G E + G   FS+SGHV  P   
Sbjct: 195 FPAVAGLYASPTVVNNVESIATVPSIVANGAEWFKSMGTEKSAGFGFFSLSGHVKRPGQY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + +T  EL+E   G        L    PGGSS P      +    +D++ +   GS 
Sbjct: 255 EAPLGVTLRELLEMAGG--IRDGHRLKFWTPGGSSTPIFTEEHI-DIPLDFESVGGAGSM 311

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++ +     FY HESCG+CTPCREG  WM++V+ R+  G   + +
Sbjct: 312 LGTRALQIFDETTSVVRVVRGWIEFYAHESCGKCTPCREGNYWMVQVLRRIEAGKGTQED 371

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           ID L ++  N+ GR+ CALGD A   +   IK FR     
Sbjct: 372 IDTLLDICDNLLGRSFCALGDGATSSVTSAIKYFREEFIA 411


>gi|24213590|ref|NP_711071.1| NADH dehydrogenase (ubiquinone) chain F [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24194382|gb|AAN48089.1| NADH dehydrogenase (ubiquinone) chain F [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 443

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 196/409 (47%), Positives = 268/409 (65%), Gaps = 6/409 (1%)

Query: 13  YGLQGKS--LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           Y    +S  L    S   +D + K L+   D II EVK SGLRGRGGAGF TG+KWSF+P
Sbjct: 10  YIDNPQSTKLEFYESVHGYDGMKKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIP 69

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K    +P Y++ NADE EPGT KDR ++ + PH +IEG +I + AIG++  F Y+RGEF 
Sbjct: 70  KDIP-KPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQ 128

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
           +  +++QAA+DE Y+ G LG N    G+D D+I++ GAGAYICGEETAL+ SLEG++G P
Sbjct: 129 KGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHP 188

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RLKPPFPA  GLY  PT VNNVE+ + +P IL +GA WYS  G E + GT+LFS+SGHV 
Sbjct: 189 RLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVK 248

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P   E  +     EL+   CGGI      L A+IPGGSSVP L A + + A MD++ + 
Sbjct: 249 KPGVYEIELGTPLLELVNDLCGGIIDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMA 307

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
              + LG+ AVIV+   TDI++  +R + FY HESCGQCTPCREGT W+  ++ ++ +G 
Sbjct: 308 AHKTMLGSGAVIVLAEGTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGE 367

Query: 370 AQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERID 417
               +IDL++ +S+N+E G TIC L DA    ++  ++ FR   + ++ 
Sbjct: 368 GTTEDIDLIFSLSRNMEGGTTICPLSDACVGAVRPALQKFRSEFDAKLK 416


>gi|45658580|ref|YP_002666.1| NADH dehydrogenase subunit I F [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601824|gb|AAS71303.1| NADH dehydrogenase I F subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 443

 Score =  474 bits (1221), Expect = e-132,   Method: Composition-based stats.
 Identities = 196/409 (47%), Positives = 268/409 (65%), Gaps = 6/409 (1%)

Query: 13  YGLQGKS--LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           Y    +S  L    S   +D + K L+   D II EVK SGLRGRGGAGF TG+KWSF+P
Sbjct: 10  YIDNPQSTKLEFYESVHGYDGMKKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIP 69

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K    +P Y++ NADE EPGT KDR ++ + PH +IEG +I + AIG++  F Y+RGEF 
Sbjct: 70  KDIP-KPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQ 128

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
           +  +++QAA+DE Y+ G LG N    G+D D+I++ GAGAYICGEETAL+ SLEG++G P
Sbjct: 129 KGAKAIQAAIDEAYSKGYLGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHP 188

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RLKPPFPA  GLY  PT VNNVE+ + +P IL +GA WYS  G E + GT+LFS+SGHV 
Sbjct: 189 RLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVK 248

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P   E  +     EL+   CGGI      L A+IPGGSSVP L A + + A MD++ + 
Sbjct: 249 KPGVYEIELGTPLLELVNDLCGGIIDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMA 307

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
              + LG+ AVIV+   TDI++  +R + FY HESCGQCTPCREGT W+  ++ ++ +G 
Sbjct: 308 AHKTMLGSGAVIVLAEGTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGE 367

Query: 370 AQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERID 417
               +IDL++ +S+N+E G TIC L DA    ++  ++ FR   + ++ 
Sbjct: 368 GTTEDIDLIFSLSRNMEGGTTICPLSDACVGAVRPALQKFRSEFDAKLK 416


>gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
 gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
          Length = 641

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 152/423 (35%), Positives = 234/423 (55%), Gaps = 6/423 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q+R +  +   +  +++ D + RG +  + K L     + +++EV  + LRGRGG 
Sbjct: 132 FYKYQERTVLGDNEHINPQNIEDYIQRGGYAALVKTLFHMTPESVLDEVDKANLRGRGGG 191

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW    +  +D   Y++VN DE +PG   DR IM   PH ++EG  I +FAIGA
Sbjct: 192 GFPAGKKWRTT-RDAADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGA 250

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E+L AA+ +    GLLG N    G+D  + VH GAGA++ GE +A
Sbjct: 251 KEGYIYVRAEYPLAVENLYAAIRQAEEYGLLGKNILGSGFDFIVKVHEGAGAFVSGESSA 310

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ ++EG+ G+PR K    A  GL+  P+ +NNVE+ A VP I+ +GA W+   G E ++
Sbjct: 311 LMTAIEGRVGEPRPKYIRTAIKGLWDKPSNLNNVETWANVPHIINKGAEWFRSIGTEGSK 370

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    VE  M  T  ++I K  GG+R     + AV  GG S  C+P   
Sbjct: 371 GTKIFALVGKVNNTGLVEVPMGTTLRDIIFKIGGGLR-DGKKIKAVQTGGPSGGCIP-EN 428

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  + +DYD L ++GS +G+  +I+MD  T ++        F   ESCG+C PCREG   
Sbjct: 429 LLDSPVDYDALSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQ 488

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ R+ +G     ++D L ++S  +    +CALG  A  P+   +K FR    + I 
Sbjct: 489 LVDILTRITEGKGTMADMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIK 548

Query: 418 QYH 420
             H
Sbjct: 549 NKH 551


>gi|323703081|ref|ZP_08114736.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323531975|gb|EGB21859.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 645

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + ++   +  +  ++  K    +I  +  SGLRGRGG 
Sbjct: 137 FFQAQMRIALRNCGLINPEVIGEYIANDGYFALYDVIHNKKPQEVIEIISKSGLRGRGGG 196

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW+F  +   D P Y+V NADE +PG   DR I+  +PH+++E   IA ++IGA
Sbjct: 197 GFPTGKKWAFTAQAK-DFPKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYSIGA 255

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
           +   IYVR E+    + L+ A+ +    GLLGS      +  DI +  GAGA++CGEETA
Sbjct: 256 NQGIIYVRAEYPIAIKRLELAIRQAREMGLLGSRLFDSEFSFDIDLRLGAGAFVCGEETA 315

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+S  G++G+PR +PPFPA  G    PT +NNVE+ A VP ILR+G +WY+  G E  +
Sbjct: 316 LLKSAMGQRGEPRPRPPFPAVCGFRNKPTLLNNVETYANVPIILRKGWAWYAAMGTETCK 375

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FSI+G +N    +E  M  T   +I    GGI GG     AV  GG S   +PA  
Sbjct: 376 GTKVFSIAGKINNTGLIEVPMGTTLRTIIYDIGGGIPGG-RAFKAVQTGGPSGGVIPA-H 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L + GS +G+  +IVMD +  ++        F + ESCG+CTPCR GT  
Sbjct: 434 LLDTPIDYESLSQAGSMMGSGGLIVMDETDCMVDIAKFYLQFSQDESCGKCTPCRIGTKR 493

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +MER+ +G  + ++++ L E++ +I+  ++C LG  A  P+   ++ FR      + 
Sbjct: 494 MLEIMERITQGKGEMKDLEELEELAGDIKDASLCGLGQTAPNPVLSTLRFFREEYIAHVR 553

Query: 418 QYHRCN 423
               C 
Sbjct: 554 D-KTCP 558


>gi|269955282|ref|YP_003325071.1| NADH-quinone oxidoreductase subunit F [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303963|gb|ACZ29513.1| NADH-quinone oxidoreductase, F subunit [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 448

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 198/410 (48%), Positives = 251/410 (61%), Gaps = 6/410 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             SL   ++   ++ + K L      I+  VK SGLRGRGGAGF TGMKW F+P     +
Sbjct: 17  SWSLDTYLAHDGYEGLRKALTMAPADIVAAVKESGLRGRGGAGFPTGMKWGFLP-PDDGK 75

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVNADESEPGTCKD  +M   P  L+EG  I S AI  H AFIYVRGE +     +
Sbjct: 76  PRYLVVNADESEPGTCKDIPLMMASPQHLVEGVAITSVAINCHHAFIYVRGEVLHVYRRV 135

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            AAV E Y +G LG +    G+D+D+ VH GAGAYICGEETALL+SLEG++GQPRLKPPF
Sbjct: 136 LAAVQEAYDAGYLGKDILGSGFDLDVTVHAGAGAYICGEETALLDSLEGRRGQPRLKPPF 195

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT VNNVESIA VP+I+R GA+W++  G E ++G  LFS+SGHV  P   E
Sbjct: 196 PAVEGLYARPTVVNNVESIASVPSIVRNGAAWFASMGTEKSQGMGLFSLSGHVTRPGQYE 255

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + IT  EL++   G        L    PGGSS P      +    +DY+ +    S L
Sbjct: 256 APLGITLRELLDMAGG--IRAGHTLKFWTPGGSSTPMFTDAHL-DVPLDYESVGAAKSML 312

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+ + D +T +++A  R   FY HESCG+CTPCREGT WM +V+ R+  G     ++
Sbjct: 313 GTRALQIFDETTCVVRATSRWMDFYAHESCGKCTPCREGTFWMKQVLARIEAGGGVDGDL 372

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +LL ++  NI GR  CALGD A  P+   I+ FR   +  ID  H C F 
Sbjct: 373 ELLVDLCDNILGRAFCALGDGATSPVTSSIELFRDEYQAHID-GHACPFD 421


>gi|126439968|ref|YP_001058343.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           668]
 gi|167918265|ref|ZP_02505356.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei BCC215]
 gi|126219461|gb|ABN82967.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           668]
          Length = 436

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 204/416 (49%), Positives = 266/416 (63%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE   +G LG       +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGEKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +  +F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEIPLGTSFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|254413257|ref|ZP_05027028.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Microcoleus chthonoplastes PCC 7420]
 gi|196179877|gb|EDX74870.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Microcoleus chthonoplastes PCC 7420]
          Length = 538

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 151/415 (36%), Positives = 246/415 (59%), Gaps = 7/415 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI       +  + + + ++ G + ++ K++ +     +++++  SGLRGRGG 
Sbjct: 112 FFARQMRIVRETSGKIDPERIEEYIAAGGYQSLYKVIHDMTPAEVVDQISKSGLRGRGGG 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ M K+  +   Y++ NADE +PG   DR ++  +PH ++EG  IA +A+GA
Sbjct: 172 GYPTGLKWATMAKMPGE-QKYVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAGYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             AFIYVR E+    + LQ A+ +     LLGS      +D  + +  GAGA++CGEETA
Sbjct: 231 TQAFIYVRAEYPLAIDRLQKAIKQAKRLSLLGSQIFGSPFDFKVDIRIGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G PR +PP+PA  GL+GCPT +NNVE+ A +  I+R GA WY+  G E ++
Sbjct: 291 LIASVEGGRGLPRPRPPYPAQSGLWGCPTLINNVETFANIAVIIREGAEWYANIGTEKSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M IT  E++E+  GG+  G   + AV  GG S  C+PA  
Sbjct: 351 GTKVFALTGKIRNNGLIEVPMGITLREIVEEMGGGVPDG--EVKAVQTGGPSGGCIPAS- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  ++VMD +T +I+       F + E+CG+C PCR GT  
Sbjct: 408 LLDTPVDYDSLVTIGSMMGSGGMVVMDETTSMIEVAQFYMEFCRGETCGKCIPCRVGTVQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           M + + +++KG A  R+I+ L ++   ++  ++C LG  A  P+   ++ FR   
Sbjct: 468 MYQALTKILKGEATMRDIEQLEQLCGMVKDTSLCGLGQTAPNPVMSTLRYFRDEY 522


>gi|256785936|ref|ZP_05524367.1| NuoF, NADH dehydrogenase subunit [Streptomyces lividans TK24]
          Length = 448

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 198/411 (48%), Positives = 256/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 28  ESWTLDVYRRHEGYEGLRKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDG 86

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 87  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 146

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E YA+G LG N    G D+ + VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 147 LHEAVREAYAAGFLGENILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 206

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   
Sbjct: 207 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQY 266

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 267 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 323

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  Q  +
Sbjct: 324 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSD 383

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   EE I     C F 
Sbjct: 384 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEEHITGRG-CPFD 433


>gi|172037233|ref|YP_001803734.1| NADH dehydrogenase I subunit F [Cyanothece sp. ATCC 51142]
 gi|171698687|gb|ACB51668.1| NADH dehydrogenase I chain F [Cyanothece sp. ATCC 51142]
          Length = 545

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 145/415 (34%), Positives = 245/415 (59%), Gaps = 6/415 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q  I   N   +   ++ D ++ G +  +  +L E   + +I EV  SGLRGRGG 
Sbjct: 127 FFAYQKLIVRENSGKIDPDNIDDYIAEGGYQQLHHVLLEMTPNDVIKEVTKSGLRGRGGG 186

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+   +  Y++ NADE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 187 GYPTGVKWATVAKMP-GQQKYVICNADEGDPGAFMDRAVLESDPHRILEGMAIAAYAVGA 245

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IY+R E+    + L+ A+ +    GL+GS      +D  I +  GAGA++CGEETA
Sbjct: 246 NHGYIYIRAEYPLAIKRLEKAIQQAKRYGLMGSQIFDSPFDFKIDIRVGAGAFVCGEETA 305

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PP+PA  GL+G PT +NNVE+ A +  I+R G  WY+  G EN++
Sbjct: 306 LIASVEGKRGTPRPRPPYPAESGLWGDPTLINNVETYANIVPIIREGGDWYASIGTENSK 365

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M  +   ++E+  GG+      + AV  GG S  C+PA  
Sbjct: 366 GTKVFALTGKIENNGLIEVPMGTSIRTIVEEIGGGVLDQG-TVKAVQTGGPSGGCIPA-H 423

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    ++YD L+++G+ +G+  +IVMD+ T +++       F + ESCG+C PCR GT  
Sbjct: 424 LLDTPVEYDSLQKLGTIMGSGGMIVMDQDTSMVEIARFYMDFCQEESCGKCIPCRAGTVQ 483

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  ++ +LV+  A ++++D L  + + ++  ++C LG  A  P+   ++ FR   
Sbjct: 484 LYDLLTKLVERKATQQDLDQLEALCQMVKDTSLCGLGMTAPNPVISTLQYFRDEY 538


>gi|21222950|ref|NP_628729.1| NuoF, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
 gi|289769829|ref|ZP_06529207.1| NADH oxidoreductase (quinone), F subunit [Streptomyces lividans
           TK24]
 gi|7387968|sp|Q9XAQ9|NUOF_STRCO RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|5042272|emb|CAB44526.1| NuoF, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
 gi|289700028|gb|EFD67457.1| NADH oxidoreductase (quinone), F subunit [Streptomyces lividans
           TK24]
          Length = 449

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 198/411 (48%), Positives = 256/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 29  ESWTLDVYRRHEGYEGLRKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDG 87

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 88  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 147

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E YA+G LG N    G D+ + VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 148 LHEAVREAYAAGFLGENILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 207

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   
Sbjct: 208 FPAVAGLYACPTVVNNVESIASVPAILNKGKDWFRSMGSEKSPGFTLYSLSGHVAGPGQY 267

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 268 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 324

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  Q  +
Sbjct: 325 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSD 384

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   EE I     C F 
Sbjct: 385 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEEHITGRG-CPFD 434


>gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 626

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 149/427 (34%), Positives = 238/427 (55%), Gaps = 8/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   +   +  +S+ + ++   +  V K L +   + +++E+  S LRGRGG 
Sbjct: 139 FYARQTRVALEHCGHINAESIEEYLAADGYTAVAKALFDMTPEEVVDEISESYLRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWS + +   ++  Y+V N DE +PG   DR +M  +PH +IEG +IA  A  A
Sbjct: 199 GFQTGRKWSQVLQQA-EKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGVATKA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + LQ A+D+    GLLG N    G+D D+ +  GAGA++CGE +A
Sbjct: 258 NYGYIYVRAEYPLAVKRLQMAIDQATKVGLLGKNILNSGFDFDLHISQGAGAFVCGEGSA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+   VP+I+ +G+ WY   G E N 
Sbjct: 318 LTASIEGNRGMPRVKPPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNY 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AG 296
           GTK F+++G+V +   +E  M     E+I    GG++ G     AV  GG S  CL    
Sbjct: 378 GTKAFALTGNVKHTGLIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGE 435

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                 +D+D LK++G+ +G+  ++VM+  + +++       F ++ESCG+C PCREGT 
Sbjct: 436 NHLELPLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTK 495

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++  +V+G      +D+L E+S  I    +C LG +A+ P++  +K FR      +
Sbjct: 496 RMLEILTDIVEGRGTLEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFREEYIAHV 555

Query: 417 DQYHRCN 423
               +C 
Sbjct: 556 VD-KKCP 561


>gi|329118904|ref|ZP_08247599.1| NADH-quinone oxidoreductase subunit F [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464932|gb|EGF11222.1| NADH-quinone oxidoreductase subunit F [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 431

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 205/418 (49%), Positives = 265/418 (63%), Gaps = 8/418 (1%)

Query: 8   IFTNLY--GLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTG 63
           IF N+        +L   + RG +  + KIL +   +D +I EVK SGLRGRGGAGF +G
Sbjct: 9   IFENVDTTAPDCWTLDAYLQRGGYQALRKILSENTSQDDVIAEVKTSGLRGRGGAGFPSG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSFMP+       Y+V N DE EPGT KDRDI+ + PH LIEG +I  +A+GA   + 
Sbjct: 69  LKWSFMPRSFPG-EKYVVCNTDEGEPGTFKDRDIILYNPHALIEGMIIGGYAMGAAAGYN 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+ GE     +  + A+ +  A+G LG N    G++ ++  HHG GAYICGEETALLESL
Sbjct: 128 YIHGEIFEGYQRFEQALAQARAAGYLGQNILGSGFNFELYAHHGYGAYICGEETALLESL 187

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGKKGQPR KPPFPA+ GL+G PTT+NN E+ + VP I+R G   ++  G EN  GTKLF
Sbjct: 188 EGKKGQPRFKPPFPASFGLFGKPTTINNTETFSSVPFIIRDGGKTFADKGIENAGGTKLF 247

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           SISGHV  P   E  +   F EL+E   G        L AVIPGGSS P +P   M    
Sbjct: 248 SISGHVERPGNYEVPLGTPFAELLEMAGGM--KNGKKLKAVIPGGSSSPVIPGDVMMTLN 305

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MDYD + + GS LG+ AVIVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++
Sbjct: 306 MDYDSIAKAGSMLGSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIV 365

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            R+V G  +  ++DLL  V  N+ GRTICAL DAA +P++G +K++R      I+   
Sbjct: 366 HRIVNGQGKMEDLDLLESVGNNMAGRTICALADAAVFPVRGFMKHYRDEFIHYIEHGK 423


>gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 598

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 152/427 (35%), Positives = 237/427 (55%), Gaps = 8/427 (1%)

Query: 1   MLTD--QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGG 57
            ++D  +  +  N   +  +++ +++SR  +  + K L E  R  +I+E+K SGLRGRGG
Sbjct: 112 FISDKLEKVVLRNCGFMDPENIEEAVSRDAYLALYKSLKEMSRQDVIDEIKISGLRGRGG 171

Query: 58  AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
            GF TG+KW F      D   Y+V NADE +PG   DR ++  +PH+++E   I  +AIG
Sbjct: 172 GGFPTGLKWQFAFNKDVD-KKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAICGYAIG 230

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           +    IY+R E+      L+ A+ +    G+LG N     ++  + + +GAGA++CGEET
Sbjct: 231 SDEGLIYIRAEYPLAINRLKKAIKQANEYGVLGKNIFGTDFNFKVRLKYGAGAFVCGEET 290

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ S+EGK+G+P LKPPFPA  G +  PT VNNVE++A +P I+ +GA W+   G E +
Sbjct: 291 ALIHSMEGKRGEPTLKPPFPAEAGYWKKPTNVNNVETLANIPVIINKGAQWFKSIGTEKS 350

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+F+++G V     +E  M  T  E+I    GGI        AV  GG S  CL   
Sbjct: 351 PGTKVFALAGKVKNVGLIEVPMGTTLQEVIFDIGGGITKNRK-FKAVQTGGPSGGCLTEK 409

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D+D LKE GS +G+  +IVMD    ++        F   ESCG+CTPCR G  
Sbjct: 410 DL-NTPIDFDSLKEKGSMMGSGGMIVMDEDDCMVAVAKFYLGFTVEESCGKCTPCRIGNK 468

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +  +++++ KG     ++ LL ++SK I+  ++C LG  +  P+   + NF       +
Sbjct: 469 RLYEILDKITKGKGSVNDLHLLKDLSKTIKRASLCGLGKTSPNPVLSTLNNFYDEYLAHV 528

Query: 417 DQYHRCN 423
               +C 
Sbjct: 529 KD-KKCP 534


>gi|325845863|ref|ZP_08169061.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481769|gb|EGC84801.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 526

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 146/426 (34%), Positives = 232/426 (54%), Gaps = 6/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R +  N   +   ++ + +S+  +  ++K + +  R  II+ +K SGLRGRGGA
Sbjct: 40  FYQNQTRLVLKNCGIIDPNNIDEYISQDGYFALNKAIFDLDRKEIIDIIKDSGLRGRGGA 99

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW        D   Y++ NADE +PG   DR ++  +PH+++E   I + AIG+
Sbjct: 100 GFPTGRKWEAAFNQDID-TKYIICNADEGDPGAFMDRSVLEFDPHSVLEAMAICARAIGS 158

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+ +  +SLQ A+ +     LLG N     +  DI +  GAGA++CGE TA
Sbjct: 159 KQGYIYVRAEYPKAVKSLQNAIKQAREYNLLGENIMGSDFSFDIDLRLGAGAFVCGEGTA 218

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ES+EGK+G PR K       GL+G PT +NNVE+ A +  I+ +G+SW+  FG E + 
Sbjct: 219 LMESIEGKRGMPRNKEFRTTVKGLWGKPTVINNVETFANIAQIINKGSSWFRSFGTEKSP 278

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     VE  M  +  +++     GI+       AV  GG S  C+P   
Sbjct: 279 GTKVFALVGKVKESGLVEVEMGTSIKKIVYDIGLGIQNDKKA-KAVQTGGPSGGCIPTK- 336

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +     D++ LKE+GS +G+  ++VMD    ++        F   ESCG+CTPCR G   
Sbjct: 337 LFDTACDFESLKEIGSIMGSGGMVVMDEDDCMVDVARFFLEFSVDESCGKCTPCRIGNKR 396

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++ L KG A +  ++ L E+SK +   ++C LG ++  PI   +  F+   +  + 
Sbjct: 397 LFEMLDDLTKGKANEETLEKLEELSKIVSETSLCGLGQSSPNPIISTMYYFKDEYQAHVG 456

Query: 418 QYHRCN 423
           +   C 
Sbjct: 457 ENKTCP 462


>gi|332528756|ref|ZP_08404733.1| NADH-quinone oxidoreductase subunit F [Hylemonella gracilis ATCC
           19624]
 gi|332041822|gb|EGI78171.1| NADH-quinone oxidoreductase subunit F [Hylemonella gracilis ATCC
           19624]
          Length = 447

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 215/414 (51%), Positives = 274/414 (66%), Gaps = 7/414 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I+  L G     L D  SRG ++ + KIL++G  +D +I  VK SGLRGRGGAGF TG+K
Sbjct: 28  IYAGLNGAN-WRLKDYESRGGYEALKKILKEGLTQDQVIATVKESGLRGRGGAGFPTGLK 86

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGTCKDRDI+ + PH +IEG  IA++A+G    + Y+
Sbjct: 87  WSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMAIAAYAMGITVGYNYI 145

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE     E  +AA++E  A+G LG      G+   +  HHG GAYICGEETALLESLEG
Sbjct: 146 HGEIFEVYERFEAALEEARAAGYLGDKILGSGFSFQLHAHHGFGAYICGEETALLESLEG 205

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK+FS+
Sbjct: 206 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLEIGKPNNGGTKIFSV 265

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F +L+E        G   L AVIPGGSS P LPA  M    MD
Sbjct: 266 SGDVERPGNYEIPLGTPFSKLLELAG--GVKGGKKLKAVIPGGSSAPVLPAHIMMECTMD 323

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD + D+++++ RLS FY HESCGQCTPCREGTGW+ R+++R
Sbjct: 324 YDSISKAGSMLGSGAVIVMDETRDMVESLKRLSYFYMHESCGQCTPCREGTGWLWRLVDR 383

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +G  +  ++  L  V+ NI GRTICALGDAAA P++ +IK+FRP  E  I +
Sbjct: 384 IERGEGRPEDMATLDSVAGNIMGRTICALGDAAAMPVRAMIKHFRPEFEALIPK 437


>gi|241763293|ref|ZP_04761350.1| NADH-quinone oxidoreductase, F subunit [Acidovorax delafieldii 2AN]
 gi|241367568|gb|EER61855.1| NADH-quinone oxidoreductase, F subunit [Acidovorax delafieldii 2AN]
          Length = 451

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 213/419 (50%), Positives = 276/419 (65%), Gaps = 11/419 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I+ +L G    S+ D  +RG +  +  IL K       +D +I  VK SGLRGRGGAGF 
Sbjct: 29  IYADLNGSN-WSIKDYEARGGYHALRTILGKDGGEGLTQDQVIATVKESGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       YLV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G    
Sbjct: 88  TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGITVG 146

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE  +  E  +AA++E  A+G LG+     G+   +  HHG GAYICGEETALLE
Sbjct: 147 YNYIHGEIFQVYERFEAALEEARAAGYLGNGILGTGFSFQLHAHHGFGAYICGEETALLE 206

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN GTK
Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLACGKPNNGGTK 266

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V  P   E  +   F +L+E   G        L AVIPGGSS P LPA  +  
Sbjct: 267 IFSVSGDVERPGNYEIPLGTPFSKLLELAGG--VRTGRQLKAVIPGGSSSPVLPASIIMD 324

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 325 CTMDYDSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLWR 384

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +++R+ +G  +  ++D+L  V+ NI GRTICALGDAAA P++ +IK+FRP  E  I   
Sbjct: 385 LVDRIHRGEGRPADMDVLDSVAGNIMGRTICALGDAAAMPVRAMIKHFRPEFEALIPNK 443


>gi|83630910|gb|ABC26907.1| HoxF [Arthrospira platensis FACHB341]
          Length = 531

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 144/417 (34%), Positives = 241/417 (57%), Gaps = 7/417 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q +I     G +  + + + ++ G +  +  ++ +   + ++ E+  SGLRGRGGA
Sbjct: 112 FFSRQLKIVREFSGKIDPEKIGEYIAVGGYRALHHVIYDLTPEEVVAEITKSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+      Y++ NADE +PG   DR ++  +PH ++EG  IA +A+GA
Sbjct: 172 GYPTGLKWATVAKMPG--QKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAGYAVGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      LQ A+ +     +LGS       + +I +  GAGA++CGEETA
Sbjct: 230 TQGYIYVRAEYPLAITRLQKAIQQAKRQSMLGSRIFGSSINFNIDIRVGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+ G +G PR +PP+PA  GL+ CPT +NNVE++  +  I+R GA WY+  G E ++
Sbjct: 290 LIASIGGGRGNPRPRPPYPAVSGLWDCPTLINNVETLGNIAPIIRNGADWYNQIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E  M IT  E++E+  GGI GG   + AV  GG S  C+PA Q
Sbjct: 350 GTKIFSLTGKIRNNGLIEVPMGITLREIVEEMGGGIPGGL-QVKAVQTGGPSGGCIPA-Q 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+ L ++GS +G+  ++VMD +T +++       F + E+CG+C PCR GT  
Sbjct: 408 FLDTPVDYESLTKLGSMMGSGGMVVMDENTSMVQVAQFYMEFCRGETCGKCIPCRVGTVQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           M +++ +L+   A   +++ L ++   +   ++C LG  A  P+   ++ F     E
Sbjct: 468 MYQLLTKLLNKQATPADLEKLKQLCDMVRATSLCGLGMTAPNPVTSTLQYFESEYLE 524


>gi|253998388|ref|YP_003050451.1| NADH-quinone oxidoreductase subunit F [Methylovorus sp. SIP3-4]
 gi|313200464|ref|YP_004039122.1| NADH-quinone oxidoreductase subunit F [Methylovorus sp. MP688]
 gi|253985067|gb|ACT49924.1| NADH-quinone oxidoreductase, F subunit [Methylovorus sp. SIP3-4]
 gi|312439780|gb|ADQ83886.1| NADH-quinone oxidoreductase, F subunit [Methylovorus sp. MP688]
          Length = 439

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 206/415 (49%), Positives = 267/415 (64%), Gaps = 6/415 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
              L      SL   ++ G +  + ++++       +I +VK SGLRGRGGAGF TG+KW
Sbjct: 20  LRTLGQPDPASLQAYLNVGGYKQLQRLVQDKVKATDVITQVKLSGLRGRGGAGFPTGLKW 79

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+   D   YLV N DE EPGT KDRDI+R+ PH LIEG  IA++ +GA   + Y+ 
Sbjct: 80  SFMPRYY-DGTKYLVCNTDEGEPGTFKDRDIIRYNPHQLIEGMAIAAYTLGARVGYNYIH 138

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE  ++ E  + A+DE  A+G +G N     +  D+   HG GAYICGEETAL+ES+EGK
Sbjct: 139 GEIWQDYEIFERALDEARAAGFIGENLFGTTFSFDLFAVHGYGAYICGEETALIESIEGK 198

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ G++G PT VNN ES   +P IL  G   +   G  N+ GTKLFS+S
Sbjct: 199 KGQPRFKPPFPASYGVFGKPTNVNNTESYTSIPWILEHGGDAFQALGVPNSGGTKLFSVS 258

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M + F EL++   G  +G    L AVIPGG S   +PA  + GA MDY
Sbjct: 259 GHVERPGNYEVRMGMPFTELLDIAGGVWKG--RQLKAVIPGGPSTAVMPAAAIMGATMDY 316

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DGL + GS LG  ++IVMD +T ++K + RLS F+  ESCGQCTPCREGTGW+ RV++R+
Sbjct: 317 DGLSKAGSSLGAGSMIVMDETTCMVKTLKRLSYFFYEESCGQCTPCREGTGWLYRVVKRI 376

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+G  +  ++DLL +VS NI GRTICALGDAAA P+   IK+FRP  E  I    
Sbjct: 377 VEGEGRMGDLDLLTDVSSNISGRTICALGDAAATPVLSFIKHFRPEFEYYIQHGK 431


>gi|145475863|ref|XP_001423954.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391016|emb|CAK56556.1| unnamed protein product [Paramecium tetraurelia]
          Length = 447

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 246/406 (60%), Positives = 293/406 (72%), Gaps = 15/406 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN+Y      +  ++ RG W     IL  G+DWII+E+K SGLRGRGGAGF 
Sbjct: 23  LKDQDRIFTNVYRDGDPYIQGALKRGDWHRTKDILTMGQDWIIDEIKKSGLRGRGGAGFP 82

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+K+    K  S    +L         GTCKDR+I+RH+PH L+EG +   FA+ A  A
Sbjct: 83  SGLKYLIHAKSQSRWKAFLF--------GTCKDREILRHDPHKLVEGALCVGFAMRARAA 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY RGEF  E  +LQ AVDE Y  G LG N+   GYD D+ VH GAGAYICGEET L+E
Sbjct: 135 YIYCRGEFWVEANALQQAVDEAYKKGFLGKNACGSGYDFDVYVHSGAGAYICGEETGLIE 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK G+PRLKPPFPAN GL+GCPT      +   V TILRRGA+W++ FGR NNRGTK
Sbjct: 195 SLEGKPGKPRLKPPFPANAGLWGCPT------TFQFVATILRRGANWFASFGRPNNRGTK 248

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNL  +IPGGSSVP LP      
Sbjct: 249 LFCISGHVNNPCTVEEEMSIPLKELIERHCGGVRGGWDNLKCIIPGGSSVPMLPKETCET 308

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L+++ SGLGTAAVIV+D+STDII AI RLS FYKHESCGQCTPCREGT W++ 
Sbjct: 309 VLMDFDALRDVRSGLGTAAVIVIDKSTDIIDAILRLSKFYKHESCGQCTPCREGTSWLVD 368

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           ++ER+  G A   EID L E++  IEG TICALGDAAAWP+QGLI+
Sbjct: 369 LLERMKVGNADFAEIDQLEELTYQIEGHTICALGDAAAWPVQGLIR 414


>gi|134299509|ref|YP_001113005.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052209|gb|ABO50180.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 569

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R    N   +   S+ + ++ G +  + K L E     +++EVK SGLRGRGG 
Sbjct: 135 FFKKQKRNALRNCGLINQTSIEEYIAVGGFKALAKTLQEMTPQQVVDEVKKSGLRGRGGG 194

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F+    SD   Y+V N DE +PG   DR ++  +P+++IE   I  +A+GA
Sbjct: 195 GFPTGLKWQFVLDQKSD-QKYVVCNGDEGDPGAFMDRSVLEDDPYSVIEAMTIGGYAVGA 253

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  + Y+R E+ +  +    A+      GLLG+N  +  +  DI +  GAGA++CGEETA
Sbjct: 254 NKGYAYIRLEYPKAIDHFNKALARAREVGLLGNNILESDFSFDIEIRVGAGAFVCGEETA 313

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG++G+PR +PPFPA  GL+  PT +NNVE+ A +  I+  G  WY+  G E ++
Sbjct: 314 LLASIEGRRGEPRPRPPFPAVSGLFEKPTLLNNVETYASICPIIINGGEWYATMGTEKSK 373

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  + +T  E++E   GG+        A   GG S  C+PA  
Sbjct: 374 GTKVFTLAGKINNTGLVEIPLGLTLREMVEDIGGGVP-NGKAFKAAQTGGPSGGCIPAAY 432

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  +I++D ST ++        F + ESCG+CTPCR GT  
Sbjct: 433 L-DTPIDYENLAALGSIVGSGGMIIVDESTCMVDLAKFYLGFTQDESCGKCTPCRIGTKR 491

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+ KG+ +  ++DLL E++ +I+   +C LG  A  PI   ++ FR   E  I 
Sbjct: 492 MLEILERITKGLGKPEDLDLLVELANSIKASALCGLGQTAPNPILSTLRYFRDEFEAHIK 551

Query: 418 QYHRCN 423
               C 
Sbjct: 552 D-KTCP 556


>gi|114567216|ref|YP_754370.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338151|gb|ABI68999.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 604

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 247/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q R+   N+  +   SL D + RG +  ++K +L+   + +I E+  SGLRGRGG 
Sbjct: 118 FYQRQTRVALRNVGLIDPSSLQDYLERGGYRTLEKSLLDMRPEQVIEEIIKSGLRGRGGG 177

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW       + +P Y++ N DE +PG   D  IM  +PH+++EG +IA++A+GA
Sbjct: 178 GFPTGLKWKACAATPA-QPRYIICNGDEGDPGAFMDESIMEGDPHSVLEGMIIAAYAVGA 236

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+ +   SL+ A++E    G LG N        +I +  G GA++CGEETA
Sbjct: 237 SNGFIYVRDEYAQSVASLRKAIEEAENHGFLGENILGSALSFNIEIVRGGGAFVCGEETA 296

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG  G+PR K  FP+  GL+G PT +NNVE+ A +P I+ RGASW++  G E ++
Sbjct: 297 LIASIEGNVGEPRDKYVFPSEKGLWGQPTIINNVETWANIPVIMERGASWFTSLGTEGSK 356

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G V     VE  M  T  E+I    GG+  G  +  AV  GG S  C+P+  
Sbjct: 357 GTKVFSLVGKVANTGLVEVPMGTTLREIIFDIGGGVPKG-RSFKAVQTGGPSGGCIPSE- 414

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L + GS +G+  +IVMD  T +++ +     F   ESCG+C PCREG   
Sbjct: 415 LLDLKVDFDSLSQAGSMMGSGGLIVMDDRTCMVEVVRYYLSFLAGESCGKCVPCREGIKC 474

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ R+  G  +  +I LL ++++ ++  ++CALG  A+ P+   ++ FR    E I 
Sbjct: 475 LLEILTRICHGQGEIGDIALLEDIAETMQQASLCALGRTASNPVLSTLRYFREEYLEHI- 533

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 534 EGQRCP 539


>gi|134283882|ref|ZP_01770578.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           305]
 gi|167718848|ref|ZP_02402084.1| NADH dehydrogenase I, F subunit [Burkholderia pseudomallei DM98]
 gi|254298538|ref|ZP_04965990.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           406e]
 gi|134244671|gb|EBA44769.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           305]
 gi|157808144|gb|EDO85314.1| NADH-quinone oxidoreductase, F subunit [Burkholderia pseudomallei
           406e]
          Length = 436

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/416 (48%), Positives = 264/416 (63%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+ E   +G LG       +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALGEARRAGFLGEKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|183220691|ref|YP_001838687.1| NADH-quinone oxidoreductase subunit F [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910792|ref|YP_001962347.1| NADH dehydrogenase subunit F [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775468|gb|ABZ93769.1| NADH dehydrogenase (ubiquinone), F chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779113|gb|ABZ97411.1| NADH-quinone oxidoreductase, chain F [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 423

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 194/414 (46%), Positives = 265/414 (64%), Gaps = 6/414 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T++      +L    S G ++++ K L E   + I+N+VK SGLRGRGGAGF TG KW
Sbjct: 7   LTTHIDASDSHTLKHYQSVGGYESLKKALSEMTAEQIVNDVKNSGLRGRGGAGFPTGNKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F+PK   D+P YL+ N DE EPGT KDR ++   PH LIEG  IA+ AI +H  +IY+R
Sbjct: 67  GFIPKT--DKPKYLICNGDEGEPGTFKDRMLIERFPHMLIEGMAIAAKAIDSHQGYIYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF +    ++ AV+E Y +GLLG N   LGYD D+ V+ GAGAYICGEE+AL+ SLEG+
Sbjct: 125 GEFHKGIRIVETAVEEAYKAGLLGKNIFGLGYDFDLAVYSGAGAYICGEESALINSLEGR 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PRLKPPFPA  GLY CPT VNNVE+   VP I+R     Y   G E + GT+LF++S
Sbjct: 185 RGHPRLKPPFPAVSGLYACPTVVNNVETFCNVPHIIRMTGEEYKKIGTEKSPGTRLFAVS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M     ELI   CGGI+   D L AVIPGGSS P L   +   A MDY
Sbjct: 245 GHVKKPGIYEVEMGTPMKELIFDICGGIKNDKD-LKAVIPGGSSSPILTKDEAMTATMDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + +  + S LG+ AVI++    D+++  +RL+ FY HESCGQCTPCREGT W+  ++ ++
Sbjct: 304 ESIASLKSMLGSGAVIILSEEADLVETTYRLAEFYSHESCGQCTPCREGTHWVKDLLHKI 363

Query: 366 VKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            KG   +++++L++ +S+N+E G TIC L DA    ++  +  F+     R+ +
Sbjct: 364 KKGEGTEKDVELIFSLSRNMEGGTTICPLADACVMAVRPTMTKFKEEFSLRLKK 417


>gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 626

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 148/427 (34%), Positives = 237/427 (55%), Gaps = 8/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   +   +  +S+ + ++   +  V K L +   + +++E+  S LRGRGG 
Sbjct: 139 FYARQTRVALEHCGHINAESIEEYLAADGYTAVAKALFDMTPEEVVDEISESYLRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWS + +   ++  Y+V N DE +PG   DR +M  +PH +IEG +IA  A  A
Sbjct: 199 GFQTGRKWSQVLQQA-EKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGVATKA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IYVR E+    + LQ A+D+    G LG N    G+D D+ +  GAGA++CGE +A
Sbjct: 258 NYGYIYVRAEYPLAVKRLQMAIDQATKVGFLGKNILNSGFDFDLHISQGAGAFVCGEGSA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+   VP+I+ +G+ WY   G E N 
Sbjct: 318 LTASIEGNRGMPRVKPPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNY 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AG 296
           GTK F+++G+V +   +E  M     E+I    GG++ G     AV  GG S  CL    
Sbjct: 378 GTKAFALTGNVKHTGLIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGE 435

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                 +D+D LK++G+ +G+  ++VM+  + +++       F ++ESCG+C PCREGT 
Sbjct: 436 NHLELPLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTK 495

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++  +V+G      +D+L E+S  I    +C LG +A+ P++  +K FR      +
Sbjct: 496 RMLEILTDIVEGRGTLEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFREEYIAHV 555

Query: 417 DQYHRCN 423
               +C 
Sbjct: 556 VD-KKCP 561


>gi|113867075|ref|YP_725564.1| NADH dehydrogenase chain F [Ralstonia eutropha H16]
 gi|113525851|emb|CAJ92196.1| NADH dehydrogenase chain F [Ralstonia eutropha H16]
          Length = 431

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 209/421 (49%), Positives = 275/421 (65%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
           Q  I   L G     L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF T
Sbjct: 10  QPLILAGLDGKN-WHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N DE EPGT KDRDI+R+ PH+LIEG  I ++A+G    +
Sbjct: 69  GLKWSFMPRTFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHSLIEGMAIGAYAMGITVGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   E +  + A++E  A+G LG N    G+D  +  HHG GAYICGEETALLES
Sbjct: 128 NYIHGEIWNEYKIFEEALEEARAAGFLGDNILGSGFDFQLHAHHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+
Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAVGPENYLKLGKPNNGGTKI 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FSISG V  P   E  +   F +L+E   G    G   + AVIPGGSS P +P   M  +
Sbjct: 248 FSISGDVERPGNYEIPLGTPFAKLLELAGGM--RGGKRIKAVIPGGSSAPVVPGDLMMAS 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ R+
Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRM 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  + ++ +
Sbjct: 366 VNRIEHGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHV-EHKQ 424

Query: 422 C 422
           C
Sbjct: 425 C 425


>gi|17228247|ref|NP_484795.1| hydrogenase subunit [Nostoc sp. PCC 7120]
 gi|17130097|dbj|BAB72709.1| hydrogenase subunit [Nostoc sp. PCC 7120]
          Length = 544

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 143/411 (34%), Positives = 237/411 (57%), Gaps = 5/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + +   ++   +  + ++L E     +++ V  SGLRGRGGAG+ TG+KW
Sbjct: 126 VLENSGKIDPERIQAYIAAQGYQGLYQVLREMTPAAVVDSVSRSGLRGRGGAGYPTGLKW 185

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           + + K   +   +++ NADE +PG   DR ++  +PH ++EG  IA++A+GA   +IYVR
Sbjct: 186 ATVAKAKGE-RKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGASQGYIYVR 244

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + L  A+ +    GLLGSN  +  +D  I +  GAGAY+CGEETAL+ S+EGK
Sbjct: 245 AEYPIAIKRLHTAIHQAQRLGLLGSNIFESPFDFKIDIRIGAGAYVCGEETALMASIEGK 304

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G P  +PP+PA  GL+G PT +NNVE+ A +  I+R+GA W++  G   ++GTK+F+++
Sbjct: 305 RGVPHPRPPYPAESGLWGYPTLINNVETFANIAPIIRKGADWFASIGTAKSKGTKVFALA 364

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G +     +E  M  +  +++ +  GGI  G     AV  GG S  C+PA       +DY
Sbjct: 365 GKIRNTGLIEVPMGTSLRQIVAEMGGGIPDGG-VAKAVQTGGPSGGCIPASA-FDTPVDY 422

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L  +GS +G+  +IVMD +T+++        F   ESCG+C PCR GT  +  ++ ++
Sbjct: 423 ESLTNLGSMMGSGGMIVMDDTTNMVDVARFFMEFCMDESCGKCIPCRVGTVQLHGLLSKI 482

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +G A   +++LL E+   ++  ++C LG +A  P+   +  FR      I
Sbjct: 483 REGKASLADLELLEELCDMVKNTSLCGLGQSAPNPVFSTLHYFRDEYLALI 533


>gi|256396787|ref|YP_003118351.1| NADH-quinone oxidoreductase, F subunit [Catenulispora acidiphila
           DSM 44928]
 gi|256363013|gb|ACU76510.1| NADH-quinone oxidoreductase, F subunit [Catenulispora acidiphila
           DSM 44928]
          Length = 441

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 201/411 (48%), Positives = 260/411 (63%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L+    R  +  V + L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 17  EPWTLAGYQRRDGYTAVKQALRMHPDEVIQLVKDSGLRGRGGAGFPTGMKWGFIPQND-G 75

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD   M   PH L+EG +IA +AI A  AFIYVRGE +     
Sbjct: 76  KPHYLVVNADESEPGTCKDIPFMMANPHELVEGVIIACYAIRASHAFIYVRGEVLHVLRR 135

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQAAV E Y +G LG       +D+++ VH GAGAYICGEETALL+SLEGK+GQPRL+PP
Sbjct: 136 LQAAVREAYDAGFLGKGVFGTDFDLELTVHAGAGAYICGEETALLDSLEGKRGQPRLRPP 195

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVESI  VP I+R G  W+ G G E + G  L+S+SGHV +P   
Sbjct: 196 FPAVAGLYASPTCVNNVESIGSVPAIVRNGVDWFKGMGSEKSPGFTLYSLSGHVKHPGQY 255

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL+  + GG+R     L    PGGSS P      +    +DY+G+   GS 
Sbjct: 256 EAPLGITLRELL-DYAGGVR-PGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSM 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A  R + FY HESCG+CTPCREGT W++++++R+ KG   + +
Sbjct: 313 LGTKALQIFDETTCVVRAALRWTEFYAHESCGKCTPCREGTYWLVQILKRMEKGEGTEDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +  L ++  NI G+  CALGD AA PIQ  +K FR    E  ++   C F 
Sbjct: 373 LGKLLDLCDNIVGKAFCALGDGAAAPIQSSLKYFRDEYLEHFERGG-CPFD 422


>gi|431020|gb|AAA03537.1| NADH dehydrogenase [Escherichia coli]
          Length = 445

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 171/406 (42%), Positives = 239/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G +G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++ RL +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRRLERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|78485167|ref|YP_391092.1| NADH-quinone oxidoreductase, F subunit [Thiomicrospira crunogena
           XCL-2]
 gi|78363453|gb|ABB41418.1| NADH dehydrogenase I chain F [Thiomicrospira crunogena XCL-2]
          Length = 426

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 201/421 (47%), Positives = 263/421 (62%), Gaps = 6/421 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGA 58
           M+   +  F   +      +   ++ G ++   K+L  E     II+EVKAS +RGRGGA
Sbjct: 1   MVHQNENCFRLNHLDNSWDIETYIANGGYEVWKKVLAGEMSPQEIIDEVKASNIRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWSFM +     P Y+V N+DE EPGT KDRDI+R+ PH L+EG +IA + IGA
Sbjct: 61  GFPTGLKWSFMNRAAPG-PKYIVCNSDEGEPGTFKDRDILRYNPHALVEGMMIAGYVIGA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+RGEF    +  Q A+D+   +G LG N    GYD ++  H GAGAYICGEETA
Sbjct: 120 CAGYNYIRGEFWEPYQRFQGAIDQARKAGFLGKNILGSGYDFELFTHLGAGAYICGEETA 179

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGKKGQPR KPPFPA+ GLYG PTT+NN E++A +P IL +G  W+   G  N  
Sbjct: 180 LIESLEGKKGQPRFKPPFPASYGLYGKPTTINNTETLASIPMILAKGGDWFCDLGVPNAG 239

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK +S+SGHVN P   E  M   F +L+E   G  +G    L AVIPGG+S   LPA +
Sbjct: 240 GTKCYSVSGHVNNPGNFEVRMGTPFKDLLELAGGIWKG--RELKAVIPGGASTAILPAEK 297

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                MDYD + + GS LG  +VI+MD  TDI+K +  LS FY  ESCGQCTPCREGTGW
Sbjct: 298 AMAMNMDYDSIAKAGSFLGAGSVIIMDDQTDIVKVMENLSHFYWDESCGQCTPCREGTGW 357

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + RV++R+  G  +  +I+ L +VS  I GR IC LGDAA   +   ++++       ID
Sbjct: 358 LYRVLKRIRSGKGRPEDIEALKDVSGKIMGRVICGLGDAATIGLTSALEHYEHEFRHYID 417

Query: 418 Q 418
            
Sbjct: 418 H 418


>gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 626

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 161/426 (37%), Positives = 238/426 (55%), Gaps = 8/426 (1%)

Query: 1   MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
           +  +QD  I   +   +  S+ D ++RG ++++ K L     + II  VKASGLRGRGG 
Sbjct: 141 LFKNQDFYIMEAIGESECDSIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   ++V N DE +PG   +R ++  +PH ++EG +IA +A+GA
Sbjct: 201 GFPTGLKWEFTRKAQGDI-KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+    +  + A+++    GLLG N    G+  D+ V  GAGA++CGEETA
Sbjct: 260 QKGYAYIRAEYPFAVKMFKKAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EGK+G PR KPPFPA  GL+G PT +NNVE+ A +P ILR G   Y   G EN+ 
Sbjct: 320 LLASIEGKRGMPRPKPPFPAQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E     T  ++I   CGG     +   AV  GG S  CL    
Sbjct: 380 GTKMFSVAGPLKATGIIEVEFGTTLRDIIYNICGGF-VEGEEFKAVQIGGPSRACLSEDF 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK+  + +G+  ++V+ + T +++       F K ESCG+C PCREGT  
Sbjct: 439 I-DMPLDYDTLKKADAMVGSGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQ 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
              ++E+   G A   ++  L  +SK I+  ++C LG  A  PI   +K FR      I+
Sbjct: 498 AYNILEKFTHGKATYEDLKALEHLSKTIKTASLCGLGKTAPNPILSTLKLFREEYIAHIE 557

Query: 418 QYHRCN 423
               C 
Sbjct: 558 --GECP 561


>gi|73540669|ref|YP_295189.1| NADH-quinone oxidoreductase, F subunit [Ralstonia eutropha JMP134]
 gi|72118082|gb|AAZ60345.1| NADH-quinone oxidoreductase, F subunit [Ralstonia eutropha JMP134]
          Length = 431

 Score =  472 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 208/421 (49%), Positives = 273/421 (64%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
           Q  I   L G     L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF T
Sbjct: 10  QPLILAGLDGKN-WHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N DE EPGT KDRDI+R  PH+LIEG  I ++A+G    +
Sbjct: 69  GLKWSFMPRTFPG-QKYLVCNTDEGEPGTFKDRDIIRFNPHSLIEGMAIGAYAMGITVGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   E +  + A++E  A+G LG N    G+   +  HHG GAYICGEETALLES
Sbjct: 128 NYIHGEIWNEYKIFEEALEEARAAGFLGDNILGSGFSFQLHAHHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+
Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPENYLKMGKPNNGGTKI 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FSISG V  P   E  +   F +L+E   G    G   + AVIPGGSS P +P   M  +
Sbjct: 248 FSISGDVERPGNYEIPLGTPFAKLLELAGGM--RGGKRIKAVIPGGSSAPVVPGEMMMAS 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ R+
Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRM 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  + ++ +
Sbjct: 366 VNRIEHGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHV-EHKQ 424

Query: 422 C 422
           C
Sbjct: 425 C 425


>gi|238028138|ref|YP_002912369.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Burkholderia glumae BGR1]
 gi|237877332|gb|ACR29665.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Burkholderia glumae BGR1]
          Length = 438

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 270/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I  NL G     L D ++RG +  + +I+E+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILANLNGEN-WRLEDYVARGGYQQLRRIIEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH +IEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHAVIEGMAIGAYAMGITAGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA++E  A+G LG+N     +   +  HHG GAY+CGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALEEARAAGYLGANILGSEFSFQLHAHHGYGAYVCGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQHYLELGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   L AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEVPLGTPFSALLELAGGM--RGGRKLKAVIPGGSSAPVIPGDTMMQIDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV++R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVKR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  +K ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEDGQGRKEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|218780402|ref|YP_002431720.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761786|gb|ACL04252.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit (NuoF-like)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1044

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 154/423 (36%), Positives = 245/423 (57%), Gaps = 6/423 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60
           +  + R+      +   S+   ++ G +  + ++L     + +  EV  + LRGRGGAGF
Sbjct: 132 MKQERRVLALCGRIDPTSIEHYIAAGGYQALVRVLSGMAPEQVAQEVIDAKLRGRGGAGF 191

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW F  +  +  P Y++ NADE +PG   DR I+  +PH++IEG +I +FA+GA  
Sbjct: 192 PAGLKWKFARQSSA-NPKYIICNADEGDPGAFMDRAILEGDPHSVIEGMIIGAFAMGARY 250

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIYVR E+    E L  A+ +    G+LG N    G+   + +  GAGA++CGEETAL+
Sbjct: 251 GFIYVREEYPIAVEHLNCAIAQAGELGILGENILGTGFSFSLSLKMGAGAFVCGEETALM 310

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK+G PR +PPFPA  G+ G P+ +NNVE+ A VP IL+ GA WY+  G EN++GT
Sbjct: 311 ASIEGKRGMPRARPPFPAQSGVDGKPSNINNVETFANVPLILKNGAGWYAQVGTENSKGT 370

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS++G VN    VE  +  +  E++    GGI  G     AV  GG S  C+PA Q  
Sbjct: 371 KIFSLAGKVNNTGLVEVPIGTSIREVVFDIGGGIPKGRK-FKAVQMGGPSGGCVPA-QFL 428

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DYD L+++G+ +G+  ++VMD +  +++       F + ESCG+C+PCR GT  ++
Sbjct: 429 NLSIDYDTLQKIGAIMGSGGMVVMDENNCMVEIARFFLAFTQSESCGKCSPCRLGTTQLL 488

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ R+  G  +  +I+ + E+ + +   ++C LG   A P    ++ F    E+ I + 
Sbjct: 489 EILTRITTGRGRLEDIETIKEIGRTMTEASLCGLGQNCAKPAISTLQYFLKEYEDHILE- 547

Query: 420 HRC 422
           +RC
Sbjct: 548 NRC 550


>gi|53725814|ref|YP_103429.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 23344]
 gi|67642187|ref|ZP_00440947.1| NADH oxidoreductase (quinone), f subunit [Burkholderia mallei GB8
           horse 4]
 gi|121600821|ref|YP_992474.1| NADH dehydrogenase I, F subunit [Burkholderia mallei SAVP1]
 gi|124384341|ref|YP_001026723.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10229]
 gi|126448595|ref|YP_001079992.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10247]
 gi|167000363|ref|ZP_02266181.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei PRL-20]
 gi|254175777|ref|ZP_04882437.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 10399]
 gi|254202105|ref|ZP_04908468.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei FMH]
 gi|254207435|ref|ZP_04913785.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei JHU]
 gi|254359857|ref|ZP_04976127.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei
           2002721280]
 gi|52429237|gb|AAU49830.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 23344]
 gi|121229631|gb|ABM52149.1| NADH dehydrogenase I, F subunit [Burkholderia mallei SAVP1]
 gi|124292361|gb|ABN01630.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10229]
 gi|126241465|gb|ABO04558.1| NADH dehydrogenase I, F subunit [Burkholderia mallei NCTC 10247]
 gi|147746352|gb|EDK53429.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei FMH]
 gi|147751329|gb|EDK58396.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei JHU]
 gi|148029097|gb|EDK87002.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei
           2002721280]
 gi|160696821|gb|EDP86791.1| NADH dehydrogenase I, F subunit [Burkholderia mallei ATCC 10399]
 gi|238523283|gb|EEP86722.1| NADH oxidoreductase (quinone), f subunit [Burkholderia mallei GB8
           horse 4]
 gi|243063697|gb|EES45883.1| NADH-quinone oxidoreductase, F subunit [Burkholderia mallei PRL-20]
          Length = 436

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/416 (48%), Positives = 264/416 (63%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLTGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA+DE   +G LG       +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALDEARRAGFLGEKIMGSDFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLEMGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEIPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAA  P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAVMPVRGMLKHYWDEFAYHVEHKH 424


>gi|118602280|ref|YP_903495.1| NADH-quinone oxidoreductase, F subunit [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567219|gb|ABL02024.1| NADH dehydrogenase subunit F [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 422

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 212/415 (51%), Positives = 268/415 (64%), Gaps = 6/415 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           F +L   Q  SL    + G +    KIL  E   ++II+E+K SGLRGRGGAGF TG+KW
Sbjct: 6   FKSLIKDQCWSLKTYEANGGYSVWCKILKGELTPEYIIDELKTSGLRGRGGAGFPTGLKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+  SD   Y++ N+DE EPGTCKDRDI+R  PH +IEG  I  F + A   + Y+R
Sbjct: 66  SFMPR-HSDGQKYVICNSDEGEPGTCKDRDILRFNPHAVIEGMAIGGFVMNASVGYNYIR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF+      + A+ E Y  GLLG N      + D+  H GAGAYICGEETALLES+EGK
Sbjct: 125 GEFMEPFYRFEDALKEAYKVGLLGRNINNSSVNFDLYTHLGAGAYICGEETALLESIEGK 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPANVGL+G PT +NN ES A VP ILR G  W++  G EN+ G KLFS+S
Sbjct: 185 KGQPRFKPPFPANVGLFGKPTMINNTESFASVPEILRCGGQWFADIGVENSGGCKLFSVS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M   F +L++   G        L AVIPGGSS P L A       MDY
Sbjct: 245 GHVKNPANFEVPMGTPFKDLLKMAGGM--RDGARLKAVIPGGSSTPVLTAKVAMNMTMDY 302

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DG+++ GS LG  +VI+MD ST +++ + RL+ FY  ESCGQCTPCREGTGW+ RV++R+
Sbjct: 303 DGIEKAGSMLGAGSVIIMDESTCMVEVLTRLTHFYYDESCGQCTPCREGTGWLYRVLKRI 362

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           + G  ++ +IDLL  V   I G TICALGDAAA P++  ++NFR   +  I+   
Sbjct: 363 IDGNGEQTDIDLLLGVQDKIIGNTICALGDAAAMPVESFLRNFRLEFKYYIEHGK 417


>gi|291613543|ref|YP_003523700.1| NADH-quinone oxidoreductase, F subunit [Sideroxydans lithotrophicus
           ES-1]
 gi|291583655|gb|ADE11313.1| NADH-quinone oxidoreductase, F subunit [Sideroxydans lithotrophicus
           ES-1]
          Length = 420

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 210/407 (51%), Positives = 273/407 (67%), Gaps = 7/407 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L + +  G +  + K+L +    + II EVKASGLRGRGGAGF TG+KWSFMP+     
Sbjct: 16  NLDNYIKAGGYQALRKVLAEKLSPEAIIAEVKASGLRGRGGAGFPTGLKWSFMPRNYQG- 74

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YLV N+DE EPGTCKDRDI+R+ PH LIEG  IA++ +     + YV GE     E +
Sbjct: 75  DKYLVCNSDEGEPGTCKDRDILRYNPHLLIEGMAIAAYTMDVKTGYNYVHGEIFEAYERM 134

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A +E   +G LG N     ++ D+  H G GAY+CGEETALLES+EGKKGQPR KPPF
Sbjct: 135 EEACEEARKAGYLGKNIMGFDFEFDLHNHMGYGAYVCGEETALLESIEGKKGQPRFKPPF 194

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ GLYG PTT+NN E+ A +P I+R G   ++G G  N+ G KLFS+SGHVN P   E
Sbjct: 195 PASFGLYGKPTTINNTETFASIPYIIREGGQKFAGLGVTNSGGVKLFSVSGHVNNPGNFE 254

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +   F +L+E   G        L AVIPGGSS+P LPA  M G  MD+D +++ GS L
Sbjct: 255 MPLGTPFMKLLEMAGG--VRNGHKLKAVIPGGSSMPVLPAEIMMGLNMDFDSIQKAGSYL 312

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+IVMD +T ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+  G  +  ++
Sbjct: 313 GTGAIIVMDETTCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIIHRIEHGEGRPEDL 372

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           DLL ++  NI GRTICALGDAAAWP+QG +K++R   E  I ++ RC
Sbjct: 373 DLLLDLCGNIAGRTICALGDAAAWPVQGFLKHYRAEFEYHI-EHKRC 418


>gi|15802831|ref|NP_288858.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 EDL933]
 gi|15832422|ref|NP_311195.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str.
           Sakai]
 gi|24113656|ref|NP_708166.1| NADH dehydrogenase I subunit F [Shigella flexneri 2a str. 301]
 gi|30063710|ref|NP_837881.1| NADH dehydrogenase I subunit F [Shigella flexneri 2a str. 2457T]
 gi|74312802|ref|YP_311221.1| NADH dehydrogenase I subunit F [Shigella sonnei Ss046]
 gi|82544762|ref|YP_408709.1| NADH dehydrogenase I subunit F [Shigella boydii Sb227]
 gi|157155010|ref|YP_001463627.1| NADH dehydrogenase I subunit F [Escherichia coli E24377A]
 gi|157161772|ref|YP_001459090.1| NADH dehydrogenase I subunit F [Escherichia coli HS]
 gi|168748133|ref|ZP_02773155.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755036|ref|ZP_02780043.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761277|ref|ZP_02786284.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767910|ref|ZP_02792917.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772990|ref|ZP_02797997.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780139|ref|ZP_02805146.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787191|ref|ZP_02812198.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798454|ref|ZP_02823461.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170019407|ref|YP_001724361.1| NADH dehydrogenase I subunit F [Escherichia coli ATCC 8739]
 gi|187730354|ref|YP_001881105.1| NADH dehydrogenase I subunit F [Shigella boydii CDC 3083-94]
 gi|191166468|ref|ZP_03028298.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B7A]
 gi|193068131|ref|ZP_03049095.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E110019]
 gi|195935661|ref|ZP_03081043.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808283|ref|ZP_03250620.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208813079|ref|ZP_03254408.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208821937|ref|ZP_03262257.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209395949|ref|YP_002271693.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209919732|ref|YP_002293816.1| NADH dehydrogenase I subunit F [Escherichia coli SE11]
 gi|217327207|ref|ZP_03443290.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218548267|ref|YP_002382058.1| NADH dehydrogenase I subunit F [Escherichia fergusonii ATCC 35469]
 gi|218554840|ref|YP_002387753.1| NADH dehydrogenase I subunit F [Escherichia coli IAI1]
 gi|218695883|ref|YP_002403550.1| NADH dehydrogenase I subunit F [Escherichia coli 55989]
 gi|218705814|ref|YP_002413333.1| NADH dehydrogenase I subunit F [Escherichia coli UMN026]
 gi|254794176|ref|YP_003079013.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223262|ref|ZP_05937543.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259188|ref|ZP_05951721.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283525|ref|YP_003500343.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O55:H7
           str. CB9615]
 gi|293405750|ref|ZP_06649742.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1412]
 gi|293446621|ref|ZP_06663043.1| NADH oxidoreductase [Escherichia coli B088]
 gi|298381433|ref|ZP_06991032.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1302]
 gi|300818115|ref|ZP_07098327.1| NADH oxidoreductase, F subunit [Escherichia coli MS 107-1]
 gi|300822155|ref|ZP_07102297.1| NADH oxidoreductase, F subunit [Escherichia coli MS 119-7]
 gi|300896958|ref|ZP_07115439.1| NADH oxidoreductase, F subunit [Escherichia coli MS 198-1]
 gi|300903669|ref|ZP_07121585.1| NADH oxidoreductase, F subunit [Escherichia coli MS 84-1]
 gi|300918551|ref|ZP_07135141.1| NADH oxidoreductase, F subunit [Escherichia coli MS 115-1]
 gi|300924543|ref|ZP_07140507.1| NADH oxidoreductase, F subunit [Escherichia coli MS 182-1]
 gi|301024082|ref|ZP_07187796.1| NADH oxidoreductase, F subunit [Escherichia coli MS 69-1]
 gi|301303257|ref|ZP_07209382.1| NADH oxidoreductase, F subunit [Escherichia coli MS 124-1]
 gi|301328776|ref|ZP_07221824.1| NADH oxidoreductase, F subunit [Escherichia coli MS 78-1]
 gi|307311156|ref|ZP_07590800.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli W]
 gi|309793163|ref|ZP_07687591.1| NADH oxidoreductase, F subunit [Escherichia coli MS 145-7]
 gi|331668982|ref|ZP_08369830.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA271]
 gi|331678230|ref|ZP_08378905.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H591]
 gi|331683955|ref|ZP_08384551.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H299]
 gi|12516634|gb|AAG57413.1|AE005460_7 NADH dehydrogenase I chain F [Escherichia coli O157:H7 str. EDL933]
 gi|13362638|dbj|BAB36591.1| NADH dehydrogenase I chain F [Escherichia coli O157:H7 str. Sakai]
 gi|24052720|gb|AAN43873.1| NADH dehydrogenase I chain F [Shigella flexneri 2a str. 301]
 gi|30041965|gb|AAP17691.1| NADH dehydrogenase I chain F [Shigella flexneri 2a str. 2457T]
 gi|73856279|gb|AAZ88986.1| NADH dehydrogenase I chain F [Shigella sonnei Ss046]
 gi|81246173|gb|ABB66881.1| NADH dehydrogenase I chain F [Shigella boydii Sb227]
 gi|157067452|gb|ABV06707.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli HS]
 gi|157077040|gb|ABV16748.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E24377A]
 gi|169754335|gb|ACA77034.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli ATCC 8739]
 gi|187427346|gb|ACD06620.1| NADH-quinone oxidoreductase, F subunit [Shigella boydii CDC
           3083-94]
 gi|187771025|gb|EDU34869.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017288|gb|EDU55410.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|189001980|gb|EDU70966.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357618|gb|EDU76037.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189362935|gb|EDU81354.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368325|gb|EDU86741.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372792|gb|EDU91208.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189378940|gb|EDU97356.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190903428|gb|EDV63147.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B7A]
 gi|192958410|gb|EDV88849.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E110019]
 gi|208728084|gb|EDZ77685.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208734356|gb|EDZ83043.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208742060|gb|EDZ89742.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209157349|gb|ACI34782.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765108|gb|ACI80866.1| NADH dehydrogenase I chain F [Escherichia coli]
 gi|209765110|gb|ACI80867.1| NADH dehydrogenase I chain F [Escherichia coli]
 gi|209765112|gb|ACI80868.1| NADH dehydrogenase I chain F [Escherichia coli]
 gi|209765114|gb|ACI80869.1| NADH dehydrogenase I chain F [Escherichia coli]
 gi|209765116|gb|ACI80870.1| NADH dehydrogenase I chain F [Escherichia coli]
 gi|209912991|dbj|BAG78065.1| NADH dehydrogenase I chain F [Escherichia coli SE11]
 gi|217319574|gb|EEC27999.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218352615|emb|CAU98396.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli 55989]
 gi|218355808|emb|CAQ88421.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia fergusonii
           ATCC 35469]
 gi|218361608|emb|CAQ99200.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli IAI1]
 gi|218432911|emb|CAR13805.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli UMN026]
 gi|254593576|gb|ACT72937.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O157:H7
           str. TW14359]
 gi|281601725|gb|ADA74709.1| NADH dehydrogenase I chain F [Shigella flexneri 2002017]
 gi|290763398|gb|ADD57359.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli O55:H7
           str. CB9615]
 gi|291323451|gb|EFE62879.1| NADH oxidoreductase [Escherichia coli B088]
 gi|291427958|gb|EFF00985.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1412]
 gi|298278875|gb|EFI20389.1| NADH-quinone oxidoreductase subunit F [Escherichia coli FVEC1302]
 gi|300359226|gb|EFJ75096.1| NADH oxidoreductase, F subunit [Escherichia coli MS 198-1]
 gi|300396738|gb|EFJ80276.1| NADH oxidoreductase, F subunit [Escherichia coli MS 69-1]
 gi|300404325|gb|EFJ87863.1| NADH oxidoreductase, F subunit [Escherichia coli MS 84-1]
 gi|300414286|gb|EFJ97596.1| NADH oxidoreductase, F subunit [Escherichia coli MS 115-1]
 gi|300419261|gb|EFK02572.1| NADH oxidoreductase, F subunit [Escherichia coli MS 182-1]
 gi|300525285|gb|EFK46354.1| NADH oxidoreductase, F subunit [Escherichia coli MS 119-7]
 gi|300529259|gb|EFK50321.1| NADH oxidoreductase, F subunit [Escherichia coli MS 107-1]
 gi|300841431|gb|EFK69191.1| NADH oxidoreductase, F subunit [Escherichia coli MS 124-1]
 gi|300844838|gb|EFK72598.1| NADH oxidoreductase, F subunit [Escherichia coli MS 78-1]
 gi|306908662|gb|EFN39159.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli W]
 gi|308123449|gb|EFO60711.1| NADH oxidoreductase, F subunit [Escherichia coli MS 145-7]
 gi|313651107|gb|EFS15506.1| NADH oxidoreductase, F subunit [Shigella flexneri 2a str. 2457T]
 gi|315061576|gb|ADT75903.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli W]
 gi|315255218|gb|EFU35186.1| NADH oxidoreductase, F subunit [Escherichia coli MS 85-1]
 gi|320177166|gb|EFW52178.1| NADH-ubiquinone oxidoreductase chain F [Shigella dysenteriae CDC
           74-1112]
 gi|320183379|gb|EFW58231.1| NADH-ubiquinone oxidoreductase chain F [Shigella flexneri CDC
           796-83]
 gi|320192095|gb|EFW66740.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7
           str. EC1212]
 gi|320641111|gb|EFX10590.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str.
           G5101]
 gi|320646499|gb|EFX15418.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H- str.
           493-89]
 gi|320651596|gb|EFX19976.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H- str. H
           2687]
 gi|320657348|gb|EFX25150.1| NADH dehydrogenase I subunit F [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320663050|gb|EFX30367.1| NADH dehydrogenase I subunit F [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667868|gb|EFX34776.1| NADH dehydrogenase I subunit F [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323184397|gb|EFZ69773.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli 1357]
 gi|323377844|gb|ADX50112.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli KO11]
 gi|323967725|gb|EGB63137.1| NADH oxidoreductase [Escherichia coli M863]
 gi|323977515|gb|EGB72601.1| NADH oxidoreductase [Escherichia coli TW10509]
 gi|324020880|gb|EGB90099.1| NADH oxidoreductase, F subunit [Escherichia coli MS 117-3]
 gi|324112816|gb|EGC06792.1| NADH oxidoreductase [Escherichia fergusonii B253]
 gi|324117838|gb|EGC11737.1| NADH oxidoreductase [Escherichia coli E1167]
 gi|325496681|gb|EGC94540.1| NADH dehydrogenase I subunit F [Escherichia fergusonii ECD227]
 gi|326339635|gb|EGD63446.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7
           str. 1125]
 gi|326344097|gb|EGD67858.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli O157:H7
           str. 1044]
 gi|327252554|gb|EGE64213.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli STEC_7v]
 gi|331064176|gb|EGI36087.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA271]
 gi|331074690|gb|EGI46010.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H591]
 gi|331078907|gb|EGI50109.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H299]
 gi|332093612|gb|EGI98670.1| NADH oxidoreductase (quinone), F subunit [Shigella boydii 3594-74]
 gi|332344065|gb|AEE57399.1| NADH oxidoreductase NuoF [Escherichia coli UMNK88]
 gi|332754932|gb|EGJ85297.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri
           4343-70]
 gi|332755333|gb|EGJ85697.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-671]
 gi|332756192|gb|EGJ86543.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri
           2747-71]
 gi|332766103|gb|EGJ96313.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri
           2930-71]
 gi|333001428|gb|EGK20996.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri VA-6]
 gi|333001728|gb|EGK21294.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-218]
 gi|333002651|gb|EGK22211.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-272]
 gi|333016398|gb|EGK35729.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-304]
 gi|333016535|gb|EGK35865.1| NADH oxidoreductase (quinone), F subunit [Shigella flexneri K-227]
          Length = 445

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 239/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
          Length = 640

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 153/423 (36%), Positives = 232/423 (54%), Gaps = 6/423 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   +   +  +++ D + RG +  + K L     + ++ EV  + LRGRGG 
Sbjct: 131 FYKYQKRIVLGDNEHINPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW    +  +D   Y++VN DE +PG   DR IM   PH ++EG  I +FAIGA
Sbjct: 191 GFPAGKKWRTT-RDAADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E+L AA+ +    GLLG N    G+D  + VH GAGA++ GE +A
Sbjct: 250 KEGYIYVRAEYPLAVENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ ++EG+ G+PR K    A  GL+  P+ +NNVE+ A VP I+ +GA W+   G E ++
Sbjct: 310 LMTAIEGRVGEPRPKYIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    VE  M  T  ++I K  GG+R     + AV  GG S  C+P   
Sbjct: 370 GTKIFALVGKVNNTGLVEVPMGTTLRDIIFKIGGGLR-DGKKIKAVQTGGPSGGCIP-EN 427

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  + +DYD L ++GS +G+  +I+MD  T ++        F   ESCG+C PCREG   
Sbjct: 428 LLDSPVDYDALSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQ 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ R+ +G     ++D L ++S  +    +CALG  A  P+   +K FR    + I 
Sbjct: 488 LVDILTRITEGKGTMVDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIK 547

Query: 418 QYH 420
             H
Sbjct: 548 NKH 550


>gi|239904886|ref|YP_002951624.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
 gi|239794749|dbj|BAH73738.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
          Length = 490

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 152/424 (35%), Positives = 233/424 (54%), Gaps = 6/424 (1%)

Query: 4   DQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            Q RI T N   +  +SL D ++   ++ + K L      ++  +K +GLRGRGG GF T
Sbjct: 8   KQLRIATRNCGFIDPESLDDYIAVRGYEALAKALTMTPAEVVEIIKVAGLRGRGGGGFPT 67

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW       +D   Y+V NADE +PG   DR ++  +PH+++E   I  +AIGA    
Sbjct: 68  GVKWGIALSNAAD-QKYIVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATLGA 126

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           +Y+R E+    + L+ A+D+  A GLLG N    G+D DI + +GAGA++CGEETAL++S
Sbjct: 127 VYIRAEYPLAIKRLRKAIDDARAMGLLGKNIFGSGFDFDIEIKYGAGAFVCGEETALIKS 186

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG +G+P  KPPFPA  G +  PT VNNVE+ A VP I+ +GA W++G G   ++GTK+
Sbjct: 187 MEGHRGEPVSKPPFPAQSGYWAKPTIVNNVETFANVPAIIIKGADWFAGIGTATSKGTKV 246

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G +     +E  M  T  E+I    GG   G +   AV  GG S   L A +    
Sbjct: 247 FALAGKIVNVGLIEVPMGTTLREVIFDIGGGCPDGKE-FKAVQTGGPSGGAL-ANKDLDV 304

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ L    S +G+  ++VMD    ++        F   E+CG+CTPCR G+  +  +
Sbjct: 305 AIDYESLIARKSMMGSGGMVVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLYEI 364

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++++ KG   K ++  L  +S NI+   +C LG     PI   +  F    E  + Q  +
Sbjct: 365 LDKITKGHGTKADLARLKSLSDNIKDTALCGLGQTMPNPILSTMDTFGHEYEAHVTQ-KK 423

Query: 422 CNFQ 425
           C   
Sbjct: 424 CPAH 427


>gi|293415577|ref|ZP_06658220.1| NADH oxidoreductase [Escherichia coli B185]
 gi|291433225|gb|EFF06204.1| NADH oxidoreductase [Escherichia coli B185]
          Length = 445

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 239/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
          Length = 626

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 161/426 (37%), Positives = 238/426 (55%), Gaps = 8/426 (1%)

Query: 1   MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
           +  +QD  I   +   +  S+ D ++RG ++++ K L     + II  VKASGLRGRGG 
Sbjct: 141 LFKNQDFYIMEAIGESECDSIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   ++V N DE +PG   +R +++ +PH ++EG +IA +A+GA
Sbjct: 201 GFPTGLKWEFTRKAQGDI-KFVVCNGDEGDPGAFMNRTLLKRDPHLVLEGMIIAGYAVGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+       + A+++    GLLG N    G+  D+ V  GAGA++CGEETA
Sbjct: 260 QKGYAYIRAEYPFAVRMFKKAIEDAKKMGLLGENILGTGFSFDVEVKEGAGAFVCGEETA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EGK+G PR KPPFPA  GL+G PT +NNVE+ A +P ILR G   Y   G EN+ 
Sbjct: 320 LLASIEGKRGMPRPKPPFPAQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E     T  ++I   CGG     +   AV  GG S  CL    
Sbjct: 380 GTKMFSVAGPLKATGIIEVEFGTTLRDIIYNICGGF-VEGEEFKAVQIGGPSGACLSEDF 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK+  + +G+  ++V+ + T +++       F K ESCG+C PCREGT  
Sbjct: 439 I-DMPLDYDTLKKADAMVGSGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQ 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
              ++E+   G A   ++  L  +SK I+  ++C LG  A  PI   +K FR      I+
Sbjct: 498 AYNILEKFTHGKATYEDLKALEHLSKTIKTASLCGLGKTAPNPILSTLKLFREEYIAHIE 557

Query: 418 QYHRCN 423
               C 
Sbjct: 558 --GECP 561


>gi|269926644|ref|YP_003323267.1| NADH dehydrogenase (quinone) [Thermobaculum terrenum ATCC BAA-798]
 gi|269790304|gb|ACZ42445.1| NADH dehydrogenase (quinone) [Thermobaculum terrenum ATCC BAA-798]
          Length = 580

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 167/422 (39%), Positives = 253/422 (59%), Gaps = 7/422 (1%)

Query: 5   QDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N      +SL D ++ G +  ++K L E  +D II EVKAS LRGRGGAGF  
Sbjct: 139 QHRILLANCGWQNPESLEDYLALGGFSALEKALFEMSQDEIIAEVKASNLRGRGGAGFPA 198

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW    +   +RP Y++VNA E EP   KDR ++  +P+ +IEG +IA++A+G +  +
Sbjct: 199 GIKWES-ARSERNRPKYVIVNAHEGEPNVFKDRRLIEGDPYAVIEGLMIAAWAVGVNDGY 257

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IYV  E+    E L  A+   +  GLLG +    G+D DI V  GAGAYI GE +A +  
Sbjct: 258 IYVGSEYPLAMERLNRAIRRMHQVGLLGKDILGSGFDFDIKVVPGAGAYISGEASAAIYG 317

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           ++G+KG PR KPP  A  GL+G PT VNNVE++A VP I+ +GA W++  G EN+ GTK+
Sbjct: 318 IQGQKGFPRTKPPRSAEAGLWGKPTVVNNVETLANVPHIINKGAQWFASIGTENSTGTKV 377

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS++G +N+   VE  M IT  +L+    GG+R G     AV+ GG S   LP   +   
Sbjct: 378 FSLAGDINHVSLVEADMGITMRDLLFVAGGGMRNGAK-FKAVLAGGISGGALPESTL-DL 435

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
             ++  L+  GS +G+   I+ D +T ++   +  + F + ESCG+C PCR GT   + +
Sbjct: 436 TNEFGTLEAEGSMMGSGGYIIYDENTCMVDLAFYCTRFNRDESCGKCVPCRIGTSAQLAM 495

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++R++KG+ ++ +ID L + S++I   ++C LG AA  P+  ++++FR  +E  I +  R
Sbjct: 496 LDRIMKGLGEEIDIDRLTQSSEDIIAYSLCGLGQAAPIPVLSVLRHFRDEVEAHIRE-KR 554

Query: 422 CN 423
           C 
Sbjct: 555 CP 556


>gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
 gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
          Length = 640

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 153/423 (36%), Positives = 230/423 (54%), Gaps = 6/423 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   +   +  +++ D + RG +  + K L     + ++ EV  + LRGRGG 
Sbjct: 131 FYKYQKRIVLGDNEHINPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW        D   Y++VN DE +PG   DR IM   PH ++EG  I +FAIGA
Sbjct: 191 GFPAGKKWRTTHDAA-DPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E+L AA+ +    GLLG N    G+D  + VH GAGA++ GE +A
Sbjct: 250 KEGYIYVRAEYPLAVENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ ++EG+ G+PR K    A  GL+  P+ +NNVE+ A VP I+ +GA W+   G E ++
Sbjct: 310 LMTAIEGRVGEPRPKYIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    VE  M  T  ++I K  GG+R     + AV  GG S  C+P   
Sbjct: 370 GTKIFALVGKVNNTGLVEVPMGTTLRDIIFKIGGGLR-DGKKIKAVQTGGPSGGCIP-EN 427

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  + +DYD L ++GS +G+  +I+MD  T ++        F   ESCG+C PCREG   
Sbjct: 428 LLDSPVDYDALSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQ 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ R+ +G     ++D L ++S  +    +CALG  A  P+   +K FR    + I 
Sbjct: 488 LVDILTRITEGKGTMVDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIK 547

Query: 418 QYH 420
             H
Sbjct: 548 NKH 550


>gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8]
          Length = 626

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 160/426 (37%), Positives = 237/426 (55%), Gaps = 8/426 (1%)

Query: 1   MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
           +  +QD  I   +   +  S+ D ++R  ++++ K L     + II  VKASGLRGRGG 
Sbjct: 141 LFKNQDFYIMEAIGESECDSIEDYIARSGYESLVKALTSMTPEEIIETVKASGLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   ++V N DE +PG   +R ++  +PH ++EG +IA +A+GA
Sbjct: 201 GFPTGLKWEFTRKAQGDI-KFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+    +  + A+++    GLLG N    G+  D+ V  GAGA++CGEETA
Sbjct: 260 QKGYAYIRAEYPFAVKMFKKAIEDARKLGLLGENILGTGFSFDLEVKEGAGAFVCGEETA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EGK+G PR KPPFPA  GL+G PT +NNVE+ A +P ILR G   Y   G EN+ 
Sbjct: 320 LLASIEGKRGMPRPKPPFPAQSGLWGKPTLINNVETYANIPRILRDGVENYRKRGTENSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E     T  ++I   CGG     +   AV  GG S  CL    
Sbjct: 380 GTKMFSVAGPLKATGIIEVEFGTTLRDIIYNICGGF-VEGEEFKAVQIGGPSGACLSEDF 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK+  + +G+  ++V+ + T +++       F K ESCG+C PCREGT  
Sbjct: 439 I-DMPLDYDTLKKADAMVGSGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQ 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
              ++E+   G A   ++  L  +SK I+  ++C LG  A  PI   +K FR      I+
Sbjct: 498 AYNILEKFTHGKATYEDLKTLEHLSKTIKTASLCGLGKTAPNPILSTLKLFREEYIAHIE 557

Query: 418 QYHRCN 423
               C 
Sbjct: 558 --GECP 561


>gi|190893218|ref|YP_001979760.1| NADH-ubiquinone oxidoreductase, chain F [Rhizobium etli CIAT 652]
 gi|190698497|gb|ACE92582.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli
           CIAT 652]
          Length = 421

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/423 (46%), Positives = 261/423 (61%), Gaps = 6/423 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +  N+    G  LS   + G +  + K+L E   D +I+ VK S LRGRGGAGF TG
Sbjct: 3   EPILLKNVDVRGGHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKW F+PK    +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++
Sbjct: 63  MKWGFVPKRT-GKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYV 121

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE++     L+ A+ E +A G LG       ++  + +H GAGAYICGEETA+LESL
Sbjct: 122 YIRGEYVTAIRRLEQAIAEAHARGYLGKRILGSDFNFAVHIHCGAGAYICGEETAMLESL 181

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RGA W+ G G + + G KL+
Sbjct: 182 EGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPDKSPGPKLY 241

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG V  P   E  M I   EL+E H GG+      + AVIPGG S P +P   +    
Sbjct: 242 CLSGQVRKPGLYELPMGIALRELVENHAGGV-LPGRRIKAVIPGGVSAPVIPEHGLE-VG 299

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W+++V+
Sbjct: 300 MDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKVL 359

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+  G     +++ L  + K I G T CALGD AA  ++  + +FR      I+  HRC
Sbjct: 360 RRIEAGDGAPGDLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHIED-HRC 418

Query: 423 NFQ 425
            F 
Sbjct: 419 PFH 421


>gi|42524473|ref|NP_969853.1| NADH dehydrogenase I, F subunit [Bdellovibrio bacteriovorus HD100]
 gi|39576682|emb|CAE80846.1| NADH dehydrogenase I, F subunit [Bdellovibrio bacteriovorus HD100]
          Length = 430

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 204/416 (49%), Positives = 277/416 (66%), Gaps = 5/416 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           + ++ T  Y L + ++L+   ++G ++ + K  +     II+EVKASGLRGRGGAGF TG
Sbjct: 3   EVKMLTEFYHLPEYQTLAGYKAKGGYETLHKAFKMQPQAIIDEVKASGLRGRGGAGFPTG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKW F+PK     P YL+ NADE EPGT KDR +M   PH LIEG +I++FAIG+H  +I
Sbjct: 63  MKWGFLPKN--GEPRYLLCNADEGEPGTFKDRMMMERAPHQLIEGMIISAFAIGSHKGYI 120

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVRGE++   E L  A+ E YA+GLLG N    G+D D+ V+ GAGAYICGEET ++ SL
Sbjct: 121 YVRGEYVFPIECLNKAIKEAYAAGLLGKNILGSGFDFDLDVYRGAGAYICGEETGMISSL 180

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG KGQP+LKPPFPA  G    PT VNNVE++A V  I++ GA  Y   G E + GTKLF
Sbjct: 181 EGLKGQPKLKPPFPAVQGYLRKPTIVNNVETLAAVTYIIKDGAQAYRKHGTEKSAGTKLF 240

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+SG+V  P   E  +     +LI K  GG++ G   L AVIPGGSS P L A ++  A 
Sbjct: 241 SLSGNVMTPGNFEVPLGYPLMDLIMKEGGGMKPGRK-LKAVIPGGSSAPVLTAEEVAKAN 299

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DY+ L  +G+ LG+ AVIV+D S  ++  +  L+ FY HESCGQCTPCREGTGW+ +V+
Sbjct: 300 LDYESLAGLGTMLGSGAVIVIDDSQCMVDMLGVLTHFYAHESCGQCTPCREGTGWLNKVL 359

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +++G  + ++IDLL +V+ N++G+TICAL DAAA P+   +  FR   E  + +
Sbjct: 360 HSILEGRGRLQDIDLLIKVADNMKGKTICALSDAAALPVLSFVTKFRDEFEFYVRE 415


>gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 624

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 164/426 (38%), Positives = 246/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTN-LYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+  +    +   S+++ ++ G +   +K L +  +D II E+  S LRGRGG 
Sbjct: 138 FYKKQTRLVLDHCGHIDSTSINEYLAIGGYSAFEKALFDMTQDEIITEISESNLRGRGGG 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KWS + K  +    Y+V N DE +PG   DR IM  +PH ++EG +IA  A GA
Sbjct: 198 GFPAGRKWSQV-KRQNVEQKYVVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAGLACGA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +    GLLG N    G++ ++ ++ GAGA++CGE +A
Sbjct: 257 SEGYIYVRAEYPMAVSRLKTAIKQASECGLLGENILGRGFNFNLHINRGAGAFVCGEGSA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I+  GA+WY   G EN+ 
Sbjct: 317 LTASIEGKRGMPRVKPPRTVEHGLFDKPTVLNNVETYANVPLIINNGAAWYKAIGPENSP 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G++     +E  M  T  E+I    GG+RG  D   AV  GG S  C  +  
Sbjct: 377 GTKAFALTGNIENTGLIEVPMGTTLREVIFDIGGGMRGNAD-FKAVQIGGPSGGC-LSTD 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +D+D L+E G+ +G+  ++VMD +T +++       F ++ESCG+C PCREGT  
Sbjct: 435 DLDLPLDFDSLQEAGAMIGSGGMVVMDSNTCMVEVARFFMNFTQNESCGKCVPCREGTKR 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V+G  +  +I+LL E++  I    +C LG AAA+P+   IKNFR   E  I 
Sbjct: 495 MLEILERIVEGKGKDGDIELLLELADTISATALCGLGKAAAFPVVSTIKNFREEYEAHIR 554

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 555 E-KRCP 559


>gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 640

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 153/423 (36%), Positives = 232/423 (54%), Gaps = 6/423 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   +   +  +++ D + RG +  + K L     + ++ EV  + LRGRGG 
Sbjct: 131 FYKYQKRIVLGDNEHINPQNIEDYIQRGGYSALVKTLFHMTPESVLEEVDKANLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW    +  +D   Y++VN DE +PG   DR IM   PH ++EG  I +FAIGA
Sbjct: 191 GFPAGKKWRTT-RDAADPVKYVLVNCDEGDPGAFMDRSIMEGNPHCVLEGLAIGAFAIGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    E+L AA+ +    GLLG N    G+D  + VH GAGA++ GE +A
Sbjct: 250 KEGYIYVRAEYPLAVENLYAALRQAEEYGLLGKNILGSGFDFVVKVHEGAGAFVSGESSA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ ++EG+ G+PR K    A  GL+  P+ +NNVE+ A VP I+ +GA W+   G E ++
Sbjct: 310 LMTAIEGRVGEPRPKYIRTAIKGLWDKPSNLNNVETWANVPHIINKGADWFRSIGTEGSK 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G VN    VE  M  T  ++I K  GG+R     + AV  GG S  C+P   
Sbjct: 370 GTKIFALVGKVNNTGLVEVPMGTTLRDIIFKIGGGLR-DGKKIKAVQTGGPSGGCIP-EN 427

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  + +DYD L ++GS +G+  +I+MD  T ++        F   ESCG+C PCREG   
Sbjct: 428 LLDSPVDYDALSKLGSMVGSGGLIIMDEETCMVDIARYFINFLSDESCGKCLPCREGLRQ 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ R+ +G     ++D L ++S  +    +CALG  A  P+   +K FR    + I 
Sbjct: 488 LVDILTRITEGKGTMVDMDTLEDLSGVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIK 547

Query: 418 QYH 420
             H
Sbjct: 548 NKH 550


>gi|167970179|ref|ZP_02552456.1| NADH dehydrogenase I chain F nuoF (NADH-ubiquinone oxidoreductase
           chain F) [Mycobacterium tuberculosis H37Ra]
          Length = 424

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 204/414 (49%), Positives = 268/414 (64%), Gaps = 11/414 (2%)

Query: 19  SLSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
            L+          +  + K L    D +I+ VK SGLRGRGGAGF+TG KWSF+P+  + 
Sbjct: 2   DLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTG 61

Query: 76  ---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
              +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI AH AF+YVRGE +  
Sbjct: 62  AAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPV 121

Query: 133 RESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              L  AV E YA+G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 122 LRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRL 181

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P
Sbjct: 182 RPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRP 241

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+   
Sbjct: 242 GQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAA 298

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 299 GSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGS 358

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +ID L ++S +I G++ CALGD AA P+   IK+FR      + +   C F 
Sbjct: 359 HEDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV-EGGGCPFD 411


>gi|311278759|ref|YP_003940990.1| NADH-quinone oxidoreductase, F subunit [Enterobacter cloacae SCF1]
 gi|308747954|gb|ADO47706.1| NADH-quinone oxidoreductase, F subunit [Enterobacter cloacae SCF1]
          Length = 445

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 169/407 (41%), Positives = 237/407 (58%), Gaps = 5/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  +    K L     D I++ VK SGL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYQAKNGYAGARKALSGMAPDDIVSAVKDSGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   +
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQ 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G +G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPASSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q 
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQQ 426


>gi|251773162|gb|EES53715.1| NADH dehydrogenase (quinone) F subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 617

 Score =  472 bits (1214), Expect = e-131,   Method: Composition-based stats.
 Identities = 151/427 (35%), Positives = 236/427 (55%), Gaps = 7/427 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +I ++  G +   S+ D ++   +  + K+L E   D +I+E+  SGLRGRGG 
Sbjct: 131 FFRGQVKIVSSRCGLIDPSSIDDYIATDGYKALRKMLTEMTPDMVIDEMTKSGLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG- 117
           GF TG+KW    +   +   Y+V NADE +PG   DR I+  +PH+++EG + AS+AIG 
Sbjct: 191 GFYTGLKWKLTRQSQGE-EKYVVCNADEGDPGAFMDRSILEGDPHSVLEGMLAASYAIGN 249

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IY R E+    + L+ A+D+      LG N    G+  DI +  GAGAY+CGEET
Sbjct: 250 AKKGYIYCRAEYPLAIKRLRKAIDDARERNFLGDNILGTGFSFDITIKEGAGAYVCGEET 309

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL SL G++G P  KPPFPA  G++G PT +NNVE++  V  I+  G  WY+ +G E  
Sbjct: 310 ALLASLMGERGMPWPKPPFPAQKGVWGKPTVINNVETLGNVGHIILNGGDWYASYGSEKT 369

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK F+++G V     +E         ++    GG+        A   GG S  C+PA 
Sbjct: 370 KGTKTFALTGSVKNSGLIEVPAGTPLRSIVFDIGGGMLEKKIPFKAAQLGGPSGGCIPAS 429

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D++ +   G+ +G+  +++MD ++ I+        F + ESCG+CTPCR G+ 
Sbjct: 430 GL-DTPVDFENVIAAGAIMGSGGIVIMDEASCIVDTAKFFLKFTQDESCGECTPCRVGSK 488

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ R+ +G  Q+ ++D L  +S  ++  ++C LG AA  P+   I+ FR   E  I
Sbjct: 489 IMLEILTRITEGKGQEGDLDELIRLSMYVKSNSLCGLGAAAPNPVLSTIRYFREEFEAHI 548

Query: 417 DQYHRCN 423
              H C 
Sbjct: 549 RDKH-CP 554


>gi|26248671|ref|NP_754711.1| NADH dehydrogenase I subunit F [Escherichia coli CFT073]
 gi|91211576|ref|YP_541562.1| NADH dehydrogenase I subunit F [Escherichia coli UTI89]
 gi|117624473|ref|YP_853386.1| NADH dehydrogenase I subunit F [Escherichia coli APEC O1]
 gi|170767289|ref|ZP_02901742.1| NADH-quinone oxidoreductase, F subunit [Escherichia albertii
           TW07627]
 gi|215487497|ref|YP_002329928.1| NADH dehydrogenase I subunit F [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559197|ref|YP_002392110.1| NADH dehydrogenase I subunit F [Escherichia coli S88]
 gi|218690444|ref|YP_002398656.1| NADH dehydrogenase I subunit F [Escherichia coli ED1a]
 gi|227887340|ref|ZP_04005145.1| NADH dehydrogenase I subunit F [Escherichia coli 83972]
 gi|237704758|ref|ZP_04535239.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|300983379|ref|ZP_07176563.1| NADH oxidoreductase, F subunit [Escherichia coli MS 45-1]
 gi|301049037|ref|ZP_07196022.1| NADH oxidoreductase, F subunit [Escherichia coli MS 185-1]
 gi|306814605|ref|ZP_07448767.1| NADH dehydrogenase I subunit F [Escherichia coli NC101]
 gi|312967582|ref|ZP_07781797.1| NADH oxidoreductase, F subunit [Escherichia coli 2362-75]
 gi|331647939|ref|ZP_08349031.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M605]
 gi|26109076|gb|AAN81279.1|AE016763_238 NADH dehydrogenase I chain F [Escherichia coli CFT073]
 gi|91073150|gb|ABE08031.1| NADH dehydrogenase I chain F [Escherichia coli UTI89]
 gi|115513597|gb|ABJ01672.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli APEC O1]
 gi|170123623|gb|EDS92554.1| NADH-quinone oxidoreductase, F subunit [Escherichia albertii
           TW07627]
 gi|215265569|emb|CAS09972.1| NADH: ubiquinone oxidoreductase, chain F [Escherichia coli O127:H6
           str. E2348/69]
 gi|218365966|emb|CAR03710.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli S88]
 gi|218428008|emb|CAR08929.2| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli ED1a]
 gi|222034040|emb|CAP76781.1| NadH-quinone oxidoreductase subunit F [Escherichia coli LF82]
 gi|226901124|gb|EEH87383.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|227835690|gb|EEJ46156.1| NADH dehydrogenase I subunit F [Escherichia coli 83972]
 gi|281179371|dbj|BAI55701.1| NADH dehydrogenase I chain F [Escherichia coli SE15]
 gi|284922272|emb|CBG35357.1| NADH-quinone oxidoreductase subunit F [Escherichia coli 042]
 gi|294492366|gb|ADE91122.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli IHE3034]
 gi|300299146|gb|EFJ55531.1| NADH oxidoreductase, F subunit [Escherichia coli MS 185-1]
 gi|300408545|gb|EFJ92083.1| NADH oxidoreductase, F subunit [Escherichia coli MS 45-1]
 gi|305851999|gb|EFM52451.1| NADH dehydrogenase I subunit F [Escherichia coli NC101]
 gi|307554346|gb|ADN47121.1| NADH dehydrogenase I chain F [Escherichia coli ABU 83972]
 gi|307626180|gb|ADN70484.1| NADH dehydrogenase I subunit F [Escherichia coli UM146]
 gi|312287779|gb|EFR15684.1| NADH oxidoreductase, F subunit [Escherichia coli 2362-75]
 gi|312946902|gb|ADR27729.1| NADH dehydrogenase I subunit F [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315285916|gb|EFU45354.1| NADH oxidoreductase, F subunit [Escherichia coli MS 110-3]
 gi|315292243|gb|EFU51595.1| NADH oxidoreductase, F subunit [Escherichia coli MS 153-1]
 gi|315298117|gb|EFU57386.1| NADH oxidoreductase, F subunit [Escherichia coli MS 16-3]
 gi|320196151|gb|EFW70775.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli WV_060327]
 gi|323187991|gb|EFZ73286.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli RN587/1]
 gi|323944797|gb|EGB40863.1| NADH oxidoreductase [Escherichia coli H120]
 gi|323952077|gb|EGB47951.1| NADH oxidoreductase [Escherichia coli H252]
 gi|323956050|gb|EGB51803.1| NADH oxidoreductase [Escherichia coli H263]
 gi|324006666|gb|EGB75885.1| NADH oxidoreductase, F subunit [Escherichia coli MS 57-2]
 gi|330912109|gb|EGH40619.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli AA86]
 gi|331043663|gb|EGI15801.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M605]
          Length = 445

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 171/406 (42%), Positives = 238/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK SGL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDSGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G +G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|294669098|ref|ZP_06734184.1| NADH oxidoreductase, F subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309090|gb|EFE50333.1| NADH oxidoreductase, F subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 426

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 201/408 (49%), Positives = 261/408 (63%), Gaps = 6/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +D +I EVK SGLRGRGGAGF +G+KWSFMP+  
Sbjct: 12  DCWTLDEYVKRGGYTALRKILAEKTPQDDVIAEVKTSGLRGRGGAGFPSGLKWSFMPRSF 71

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+R  PH LIEG +I  +A+GA   + Y+ GE     
Sbjct: 72  PG-EKYIVCNTDEGEPGTFKDRDIIRFNPHALIEGMIIGGYAMGACAGYNYIHGEIFEGY 130

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+ E   +G LG N    G+D ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 131 QRFEAALAEAREAGFLGKNILGSGFDFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 190

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GL+G PTT+NN E+ A VP I+R G   ++  G  N  GTKLFS+SGHV  P 
Sbjct: 191 PPFPASFGLFGKPTTINNTETFASVPFIIRDGGQTFADKGIPNAGGTKLFSVSGHVERPG 250

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F +L+    G    G   L AVIPGGSS P +P   M    MDYD + + G
Sbjct: 251 NYEVPLGTPFADLLSMAGG--VRGGKKLKAVIPGGSSSPVIPGDMMMTLTMDYDAISKAG 308

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVIVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V G  + 
Sbjct: 309 SMLGSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIIHRIVNGQGRM 368

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +++LL  +  N+ GRTICAL DAA +P++G +K++R      I+   
Sbjct: 369 EDLELLESIGNNMAGRTICALADAAVFPVRGFMKHYRDEFVHYIEHGK 416


>gi|329935992|ref|ZP_08285792.1| NADH dehydrogenase subunit NuoF [Streptomyces griseoaurantiacus
           M045]
 gi|329304470|gb|EGG48348.1| NADH dehydrogenase subunit NuoF [Streptomyces griseoaurantiacus
           M045]
          Length = 462

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 196/411 (47%), Positives = 255/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 41  ESWTLDVYRRHEGYEGLRKALAMSPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDG 99

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 100 KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 159

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E YA+G LG +    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 160 LHEAVREAYAAGYLGKDILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 219

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL+ G  W+   G E + G  L+S+SGHV  P   
Sbjct: 220 FPAVAGLYACPTVVNNVESIASVPAILKNGKDWFRSMGSEKSPGFTLYSLSGHVTSPGQY 279

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 280 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGSM 336

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     +
Sbjct: 337 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGVMSD 396

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G+  CALGD AA PI   +K FR   EE I     C F 
Sbjct: 397 LDKLNDIADNINGKAFCALGDGAASPIFSSLKYFRAEYEEHITGRG-CPFD 446


>gi|195342920|ref|XP_002038046.1| GM17964 [Drosophila sechellia]
 gi|194132896|gb|EDW54464.1| GM17964 [Drosophila sechellia]
          Length = 435

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 243/420 (57%), Positives = 292/420 (69%), Gaps = 27/420 (6%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 39  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 98

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 99  SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 158

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLES 181
           +IY+RGEF  E  ++Q A+ E Y +         GYD D+ +H GAGAYICGEETAL+ES
Sbjct: 159 YIYIRGEFYNEASNMQLAIAEAYQA---------GYDFDVFMHRGAGAYICGEETALIES 209

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK+G+PRLKPPFPA+VG++         E++A V      G                 
Sbjct: 210 LEGKQGKPRLKPPFPADVGVFDAQPQYQ-CETVA-VHHHWPSGG---------------- 251

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
                 V  PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P       
Sbjct: 252 VGSPASVAPPCTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDV 311

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
           IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG GWM ++
Sbjct: 312 IMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGIGWMNKI 371

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           M R VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R+  + +
Sbjct: 372 MTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKRMQLHAK 431


>gi|237737513|ref|ZP_04567994.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
 gi|229419393|gb|EEO34440.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
          Length = 592

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 150/423 (35%), Positives = 234/423 (55%), Gaps = 6/423 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFS 61
             + R+  N   +  +++ D +    +   +K + E  ++++I  +  SGLRGRGG GF 
Sbjct: 110 KQERRVLKNCGVIDPENIDDFLRNDGYKAAEKAISEMTKEFVIKNIIDSGLRGRGGGGFP 169

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K  ++   Y+V NADE +PG   DR I+  +PH++IEG +IA +AIGA   
Sbjct: 170 TGIKWDIASKNHAE-QKYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKG 228

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
            +Y+R E+      L  A+      G LG N     ++ DI +  GAGA++CGEETAL+ 
Sbjct: 229 LVYIRAEYPLAISRLDKAIVSARKRGYLGKNLFGTDFEFDIEIKFGAGAFVCGEETALIH 288

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+P  KPP+PA  G +  PT VNNVE++  VP I+  G  W+   G E + GTK
Sbjct: 289 SMEGKRGEPTSKPPYPAEKGFWDMPTVVNNVETLVNVPRIILNGVEWFREVGTEKSPGTK 348

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F++SG +N    VE  M I+  E+I +   GI+GG     AV  GG S  CL    +  
Sbjct: 349 VFALSGKINNVGLVEVPMGISLREIIFEIGEGIKGG-KKFKAVQTGGPSGGCLNEEDL-D 406

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L   G+ +G+  ++VMD    ++        F   ESCG+CTPCR G   +  
Sbjct: 407 TPIDFDSLASKGAIMGSGGMVVMDEDDCMVSVAKFFLEFTLDESCGKCTPCRIGNTRLYE 466

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R+ KG  +  ++ LL E+S+ I+  ++C LG  +A P+   +  F     + + +  
Sbjct: 467 ILDRITKGKGKLEDLALLKELSECIKATSLCGLGQTSANPVLSTLNKFYNEYIDHVVE-K 525

Query: 421 RCN 423
           RC 
Sbjct: 526 RCT 528


>gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
          Length = 627

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 243/426 (57%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q+R+     G +    + D ++   +  + KIL E   + +I EV  SGLRGRGG 
Sbjct: 141 FYKRQERVTLRYCGRIDPDDIYDYIAHRGYRAISKILQEMNPEEVIKEVNDSGLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWSF          Y++ N DE +PG   DR +M   PH+++EG +IA +AIGA
Sbjct: 201 GFPTGRKWSFAASQPGP-KKYIICNGDEGDPGAFMDRSVMEGNPHSVLEGMMIAGYAIGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +IY R E+    + ++ A+ +  A GLLG+N     ++  I +  GAGA++CGEETA
Sbjct: 260 NEGYIYARAEYPLAIKRMRKAIADAEAHGLLGNNILGSDFNFKINIKEGAGAFVCGEETA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+GCPT +NNVE++A +  I+  GA  +  +G   + 
Sbjct: 320 LIASIEGERGMPRPRPPFPAVKGLWGCPTIINNVETLANLRYIINNGAGEFKKYGTAGSS 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G V     VE  M +T  E++    GG+R       +V  GG S  CL   +
Sbjct: 380 GTKTFALAGQVQNTGLVEVPMGVTLREVVFDIGGGLR-DGKKYKSVQIGGPSGGCLTEDK 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L ++G+ +G+  ++VM   T +++       F ++ESCG+C PCREGT  
Sbjct: 439 L-DLPLDYDELMKVGAMIGSGGLVVMGDDTCMVETAKFFMGFVQNESCGKCVPCREGTKQ 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   + ++DLL E+++N++  ++C LG  A  P+   ++ FR      + 
Sbjct: 498 LLALLTKITEGKGTEADLDLLEELAQNVKDGSLCGLGKTAPNPVLTTLRYFRDEYIAHVR 557

Query: 418 QYHRCN 423
              +C 
Sbjct: 558 D-KKCP 562


>gi|200387672|ref|ZP_03214284.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199604770|gb|EDZ03315.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 445

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 169/406 (41%), Positives = 238/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+++VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   +
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQ 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|152971212|ref|YP_001336321.1| NADH dehydrogenase I subunit F [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206579298|ref|YP_002237328.1| NADH-quinone oxidoreductase, F subunit [Klebsiella pneumoniae 342]
 gi|238895801|ref|YP_002920537.1| NADH dehydrogenase I subunit F [Klebsiella pneumoniae NTUH-K2044]
 gi|262043324|ref|ZP_06016453.1| NADH dehydrogenase (quinone) [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288934258|ref|YP_003438317.1| NADH-quinone oxidoreductase, F subunit [Klebsiella variicola At-22]
 gi|290508461|ref|ZP_06547832.1| NADH oxidoreductase (quinone), F subunit [Klebsiella sp. 1_1_55]
 gi|330003560|ref|ZP_08304675.1| NADH oxidoreductase, F subunit [Klebsiella sp. MS 92-3]
 gi|150956061|gb|ABR78091.1| NADH dehydrogenase I chain F [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206568356|gb|ACI10132.1| NADH-quinone oxidoreductase, F subunit [Klebsiella pneumoniae 342]
 gi|238548119|dbj|BAH64470.1| NADH dehydrogenase I chain F [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039348|gb|EEW40490.1| NADH dehydrogenase (quinone) [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288888987|gb|ADC57305.1| NADH-quinone oxidoreductase, F subunit [Klebsiella variicola At-22]
 gi|289777855|gb|EFD85852.1| NADH oxidoreductase (quinone), F subunit [Klebsiella sp. 1_1_55]
 gi|328536900|gb|EGF63199.1| NADH oxidoreductase, F subunit [Klebsiella sp. MS 92-3]
          Length = 445

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 168/407 (41%), Positives = 237/407 (58%), Gaps = 5/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+  VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGMAPDEIVTAVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   +
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAQ 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE++  VP IL  G  WY       + GTKL   SG V  P  
Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGV 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT+  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTSLAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q 
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQQ 426


>gi|150388475|ref|YP_001318524.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149948337|gb|ABR46865.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 547

 Score =  471 bits (1213), Expect = e-131,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 238/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  +++ + ++   +  + + + E   + +I  +KASGLRGRGG 
Sbjct: 111 FYKKQLRLALRNCGFINPENIKEYIAEDGYLALGRAVKEMTPEAVIEVIKASGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW       +D   +++ NADE +PG   DR I+  +PH+++E   IA +AIGA
Sbjct: 171 GFPTGRKWELTHGNKND-LKFIICNADEGDPGAFMDRSILEGDPHSILEAMAIAGYAIGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY+R E+    + L  A+++    GLLG       ++ DI + +GAGA++CGEETA
Sbjct: 230 EKGYIYIRAEYPLAIQRLNIAIEQAREYGLLGERIFDSDFNFDIELKYGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EG +G+P  KPPFPA  GL+  PT VNNVE++A +P IL +G+ W+S  G ++++
Sbjct: 290 LLNSIEGGRGEPNAKPPFPAESGLWDKPTCVNNVETLANIPQILLKGSEWFSRIGTKDSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    VE  M IT  E+I    GGIR       AV  GG S  C+P   
Sbjct: 350 GTKVFALAGKVNNVGLVEVPMGITLREIIFDIGGGIRDN-KKFKAVQTGGPSGGCIPEAY 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY  L+E+GS +G+  +IVMD    ++        F + ESCG+CTPCR G   
Sbjct: 409 L-DTHVDYQTLQEVGSIMGSGGMIVMDEDDCMVNITKFYLEFAEDESCGKCTPCRIGNKR 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ R+  G   + ++  L  + + I+  ++C LG ++  PI   ++ F    +  + 
Sbjct: 468 LHEILIRITNGKGTREDLHNLKSLGEIIKDSSLCGLGQSSPNPILSTLEYFEDEYKAHVM 527

Query: 418 QYHRCN 423
               C 
Sbjct: 528 D-KTCP 532


>gi|170727208|ref|YP_001761234.1| NADH-quinone oxidoreductase subunit F [Shewanella woodyi ATCC
           51908]
 gi|169812555|gb|ACA87139.1| NADH-quinone oxidoreductase, F subunit [Shewanella woodyi ATCC
           51908]
          Length = 454

 Score =  471 bits (1212), Expect = e-131,   Method: Composition-based stats.
 Identities = 165/413 (39%), Positives = 234/413 (56%), Gaps = 6/413 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCS 74
              S+    + G +    K L + ++ +++ +K S LRGRGGAGF TG+KWSF+P+   +
Sbjct: 19  NCWSIEQYQNHGGYQGFRKSLTQSQEQLLDTLKESNLRGRGGAGFPTGLKWSFVPRGDDA 78

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P YL+VNADE EPGT KDR +M   PH +IEG +I +  +GA   ++++RG++    E
Sbjct: 79  PSPRYLIVNADEMEPGTFKDRMLMEKTPHQIIEGLLIGAQTLGASIGYVFLRGDYYLAEE 138

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            +  A+ EC  + LLG N    G D DI +H  AG YICGEETAL+ S+EGK+  PR KP
Sbjct: 139 RMTKALQECRDANLLGKNILGSGLDFDIHLHTSAGRYICGEETALINSMEGKRANPRAKP 198

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFP   GL+G PT VNNVE+   +P I+  G  W+   G  ++ GTK+F +SG V  P  
Sbjct: 199 PFPQVAGLWGKPTIVNNVETFCNLPHIINFGPIWFKELGLNDDAGTKIFGVSGRVKRPGL 258

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  M     E+IE+H GG+  G+  L   +PGG S   L    +    MDYD + + GS
Sbjct: 259 WELPMGTPIREIIEQHAGGMCDGY-TLKGFLPGGGSTDFLVTEHL-DIPMDYDTIGKQGS 316

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +GT  +I++D     +  +  L  F+  ESCG CTPCR+G  W   ++E++ +G  +  
Sbjct: 317 RMGTGTIIILDDRYCPVAMVLNLIKFFAQESCGWCTPCRDGLPWAQVLLEKIERGEGEPE 376

Query: 374 EIDLLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +I  L E+ +    G T CAL   A  P+Q  +K FR   E  I Q   C F 
Sbjct: 377 DITQLEELCRFAAPGNTFCALAPGAVEPLQSALKYFREDFEAHISQAC-CPFH 428


>gi|225024119|ref|ZP_03713311.1| hypothetical protein EIKCOROL_00987 [Eikenella corrodens ATCC
           23834]
 gi|224943144|gb|EEG24353.1| hypothetical protein EIKCOROL_00987 [Eikenella corrodens ATCC
           23834]
          Length = 431

 Score =  471 bits (1212), Expect = e-131,   Method: Composition-based stats.
 Identities = 201/408 (49%), Positives = 261/408 (63%), Gaps = 6/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
              +L + + RG +  + KIL +   +D +I EVK SGLRGRGGAGF +G+KWSFMP+  
Sbjct: 19  DCWTLDEYVKRGGYTALRKILAEKTPQDDVIAEVKTSGLRGRGGAGFPSGLKWSFMPRSF 78

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                Y+V N DE EPGT KDRDI+R  PH LIEG +I  +A+GA   + Y+ GE     
Sbjct: 79  PG-EKYIVCNTDEGEPGTFKDRDIIRFNPHALIEGMIIGGYAMGACAGYNYIHGEIFEGY 137

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           +  +AA+ E   +G LG N    G+D ++  HHG GAYICGEETALLESLEGKKGQPR K
Sbjct: 138 QRFEAALAEAREAGFLGKNILGSGFDFELFAHHGYGAYICGEETALLESLEGKKGQPRFK 197

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA+ GL+G PTT+NN E+ A VP I+R G   ++  G  N  GTKLFS+SGHV  P 
Sbjct: 198 PPFPASFGLFGKPTTINNTETFASVPFIIRDGGQTFADKGIPNAGGTKLFSVSGHVERPG 257

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  +   F +L+    G    G   L AVIPGGSS P +P   M    MDYD + + G
Sbjct: 258 NYEVPLGTPFADLLAMAGG--VRGGKKLKAVIPGGSSSPVIPGDMMMTLTMDYDAIAKAG 315

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVIVMD    ++KA+ RLS FY  ESCGQCTPCREGTGW+ R++ R+V G  + 
Sbjct: 316 SMLGSGAVIVMDEDVCMVKALERLSYFYFEESCGQCTPCREGTGWLYRIVHRIVNGQGRM 375

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +++LL  +  N+ GRTICAL DAA +P++G +K++R      I+   
Sbjct: 376 EDLELLESIGNNMAGRTICALADAAVFPVRGFMKHYRDEFVHYIEHGK 423


>gi|156933126|ref|YP_001437042.1| NADH dehydrogenase I subunit F [Cronobacter sakazakii ATCC BAA-894]
 gi|156531380|gb|ABU76206.1| hypothetical protein ESA_00936 [Cronobacter sakazakii ATCC BAA-894]
          Length = 445

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 172/406 (42%), Positives = 240/406 (59%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   E
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAE 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 RLRRAIAEATEAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G     ++GTKL   SG V  P  
Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGV 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E++ GG+R G     A  PGG+    L    +    M++  + + GS
Sbjct: 262 WELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLTDAHL-DLPMEFASIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQ 425


>gi|320199872|gb|EFW74461.1| NADH-ubiquinone oxidoreductase chain F [Escherichia coli EC4100B]
          Length = 445

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 169/406 (41%), Positives = 239/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRNKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 624

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 153/412 (37%), Positives = 234/412 (56%), Gaps = 5/412 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKW 66
           I  ++   +  S+ D M RG + +  K+L++G  D +I  +K SGLRGRGGAGF TG+KW
Sbjct: 147 IMEDIGKCECDSIDDYMGRGGYLSFIKVLKEGNPDNVIKTIKDSGLRGRGGAGFPTGVKW 206

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               K       ++V N DE +PG   +R ++  +PH ++EG +IA++ IGA   + Y+R
Sbjct: 207 EIT-KNSRGDKKFVVCNGDEGDPGAFMNRTLLERDPHAVLEGMLIAAYTIGAQKGYAYIR 265

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    E  + A+++    GL+G N    G+  DI +  GAGA++CGEETALL S+EGK
Sbjct: 266 AEYPVAVEMFRKAIEDAKRLGLIGENILGTGFSFDIEIKEGAGAFVCGEETALLASIEGK 325

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PP+PA  GL+G PT +NNVE+ A VP I+R GA  Y   G  N+ GTK+FS++
Sbjct: 326 RGVPRPRPPYPAQAGLWGYPTLINNVETYANVPKIIRDGAENYRKRGVPNSPGTKMFSVT 385

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V     +E     T  +++ + CGG+ G  +   AV  GG S  CL    +    +DY
Sbjct: 386 GPVKLTGIIEVEFGTTLRQIVYEICGGLTGDNE-FKAVQIGGPSGACLSEAFL-DLPLDY 443

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D LK  G+ +G+  ++V+ +   +++       F K ESCG+C PCREG     R++ER 
Sbjct: 444 DSLKSAGAMVGSGGIVVLSKKACMVEVARFFLDFTKRESCGKCIPCREGLMQAYRILERF 503

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +G     +++ L  ++  I+  + C LG  A  PI   ++ FR      I+
Sbjct: 504 TQGKGTYEDLENLEFLAGLIKTASACGLGQTAPNPILSTLRLFRDEYIAHIE 555


>gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 626

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 148/427 (34%), Positives = 237/427 (55%), Gaps = 8/427 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   +   +  +S+ + ++   +  V+K L +   + +++E+  S LRGRGG 
Sbjct: 139 FYARQTRVALEHCGHINAESIEEYLAADGYTAVEKALFDMTPEEVVDEISESYLRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  + +   ++  Y+V N DE +PG   DR +M  +PH +IEG +IA  A  A
Sbjct: 199 GFQTGKKWCQVLQQA-EKQKYIVCNGDEGDPGAFMDRSMMEGDPHRVIEGMLIAGIATKA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + LQ A+D+    GLLG N    G+D D+ +  GAGA++CGE +A
Sbjct: 258 SYGYIYVRAEYPLAVKRLQMAIDQATKVGLLGKNILNSGFDFDLHISQGAGAFVCGEGSA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+   VP+I+ +G+ WY   G E N 
Sbjct: 318 LTASIEGNRGMPRVKPPRTVEKGLFEKPTVLNNVETFCNVPSIINKGSKWYKSIGTEKNY 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AG 296
           GTK F+++G+V +   +E  M     E+I    GG++ G     AV  GG S  CL    
Sbjct: 378 GTKAFALTGNVKHTGLIEVPMGTKLKEVIFDIGGGVKEG--KFKAVQIGGPSGGCLCVGE 435

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                 +D+D LK++G+ +G+  ++VM+  + +++       F ++ESCG+C PCREGT 
Sbjct: 436 NHLELPLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCIPCREGTK 495

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++  +V+G      +D+L E+S  I    +C LG +A+ P++  +K FR      +
Sbjct: 496 RMLEILTDIVEGRGTLEHLDMLEELSDTISATALCGLGKSASLPVKSTLKYFREEYIAHV 555

Query: 417 DQYHRCN 423
               +C 
Sbjct: 556 VD-KKCP 561


>gi|197264028|ref|ZP_03164102.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197242283|gb|EDY24903.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 445

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 169/406 (41%), Positives = 238/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+++VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G +Q  
Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGESQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|283786352|ref|YP_003366217.1| NADH-quinone oxidoreductase subunit F [Citrobacter rodentium
           ICC168]
 gi|282949806|emb|CBG89429.1| NADH-quinone oxidoreductase subunit F [Citrobacter rodentium
           ICC168]
          Length = 445

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 172/407 (42%), Positives = 239/407 (58%), Gaps = 5/407 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
            Q   L +  S+  ++   K L     D I+N+VK SGL+GRGGAGFSTG+KWS MPK  
Sbjct: 21  RQPVWLDEYRSKNGYEGARKALTALSPDEIVNQVKDSGLKGRGGAGFSTGLKWSLMPKDE 80

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           S    YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   
Sbjct: 81  SMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAA 140

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E+L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR K
Sbjct: 141 ENLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSK 200

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P 
Sbjct: 201 PPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPG 260

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + G
Sbjct: 261 LWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAG 318

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q 
Sbjct: 319 SRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQP 378

Query: 373 REIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 379 GDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIRQ 425


>gi|297625185|ref|YP_003706619.1| NADH-quinone oxidoreductase subunit F [Truepera radiovictrix DSM
           17093]
 gi|297166365|gb|ADI16076.1| NADH-quinone oxidoreductase, F subunit [Truepera radiovictrix DSM
           17093]
          Length = 447

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 191/415 (46%), Positives = 260/415 (62%), Gaps = 8/415 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           ++ ++      +L+     G ++ + K L       + +EVK SGLRGRGGAGF TG+KW
Sbjct: 23  LYKHVGVEGAHTLAYYRQHGGYEALKKALTGMKPAEVTDEVKRSGLRGRGGAGFPTGVKW 82

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP     R  ++V NADESEPG+ KDR IM  +PH L+EG  IA +AIGA    +Y+R
Sbjct: 83  SFMP-PVDGRQRFIVCNADESEPGSFKDRYIMEDDPHQLLEGMAIAGYAIGATKGVLYIR 141

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+ R  E L+ A+ E  A GLLG +    G+D D+I+H GAGAYICGEETAL+ S EG 
Sbjct: 142 GEYYRAYERLREAIAEARAEGLLGRDLFGSGFDFDVILHRGAGAYICGEETALMNSFEGL 201

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +  PRLKPPFPA  G+YG PTT+NNVES+A V  I+ RGA W++  G E+++GTKL+ +S
Sbjct: 202 RANPRLKPPFPAQAGVYGLPTTINNVESLASVVHIISRGADWFAAMGTEDSKGTKLYQLS 261

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRGAIMD 304
           G    P   E  M  TF ELI    GG+    + + A+IPGGSS P LP    +    MD
Sbjct: 262 GPAVRPGVYELPMGATFRELIFDLGGGVT---EPVKALIPGGSSTPMLPFTDDVLDTPMD 318

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWMMRVME 363
           Y  + + GS LGT  VI++ R   I+ A W L  FY HESCG+CTPCREG +GWM ++ +
Sbjct: 319 YGAIVKKGSMLGTGGVILIPRDKCIVNATWNLVRFYAHESCGKCTPCREGISGWMTKMYQ 378

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +LV G+ +  +++L+  +++NI+G+  C L DA   P+   I +FR   E  I  
Sbjct: 379 KLVAGLGEAGDLELIEMMAENIKGKAFCPLADACLGPVLSSIAHFRDEYEYLIAH 433


>gi|260598701|ref|YP_003211272.1| NADH dehydrogenase I subunit F [Cronobacter turicensis z3032]
 gi|260217878|emb|CBA32426.1| NADH-quinone oxidoreductase subunit F [Cronobacter turicensis
           z3032]
          Length = 445

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 172/406 (42%), Positives = 240/406 (59%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   E
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAE 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 RLRRAIAEATEAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G     ++GTKL   SG V  P  
Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGV 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E++ GG+R G     A  PGG+    L    +    M++  + + GS
Sbjct: 262 WELPFGTTAREILEEYAGGMRDGL-TFKAWQPGGAGTDFLTDAHL-DLPMEFASIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQ 425


>gi|327191026|gb|EGE58080.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli
           CNPAF512]
          Length = 421

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 194/413 (46%), Positives = 257/413 (62%), Gaps = 6/413 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
             G  LS   + G +  + K+L E   D +I+ VK S LRGRGGAGF TGMKW F+PK  
Sbjct: 13  RDGHLLSTFEAGGGYQALAKVLRENTPDEVIDLVKRSNLRGRGGAGFPTGMKWGFVPKRT 72

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
             +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AIGA  A++Y+RGE++   
Sbjct: 73  -GKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAI 131

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             L+ A+ E +A G LG       ++  + +H GAGAYICGEETA+LESLEGK+ QPRLK
Sbjct: 132 RRLEQAIAEAHARGYLGKRILGSDFNFAVHIHCGAGAYICGEETAMLESLEGKRAQPRLK 191

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GLY  PT +NNVE++A VP I+ RGA W+ G G + + G KL+ +SG V  P 
Sbjct: 192 PPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPDKSPGPKLYCLSGQVRKPG 251

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  M I   +L+E H GG+      + AVIPGG S P +P   +    MD+D L   G
Sbjct: 252 LYELPMGIALRDLVENHAGGV-LPGRRIKAVIPGGVSAPVIPEHGLE-VRMDFDSLAAAG 309

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG  W+++V+ R+  G    
Sbjct: 310 SMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGLNWVVKVLRRIEAGDGAP 369

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            +++ L  + K I G T CALGD AA  ++  + +FR      I Q HRC F 
Sbjct: 370 GDLEQLDMLCKGIFGNTFCALGDGAAMGLRAALAHFRAEFVAHI-QDHRCPFH 421


>gi|94985021|ref|YP_604385.1| NADH-quinone oxidoreductase, F subunit [Deinococcus geothermalis
           DSM 11300]
 gi|94555302|gb|ABF45216.1| NADH dehydrogenase subunit F [Deinococcus geothermalis DSM 11300]
          Length = 446

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/414 (46%), Positives = 255/414 (61%), Gaps = 11/414 (2%)

Query: 6   DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
            R    LY   G     +L   +  G +  V +      D +I EVK SGLRGRGGAGF+
Sbjct: 17  PRFAPTLYAHVGQPGSWTLDFYLRHGGYQGVRRAFALRPDAVIEEVKKSGLRGRGGAGFA 76

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP     + HY++ NADESEPG+ KDR ++  +PH LIEG +I  +A+ A   
Sbjct: 77  TGLKWSFMPLND-GKQHYIICNADESEPGSFKDRYLLSEDPHQLIEGMLIGGYAMRASVG 135

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++     + AA+ E  A+GLLG N    G+D D+ VH GAGAYICGEETAL+ 
Sbjct: 136 YIYIRGEYVHAAGRVWAAIREARAAGLLGKNVLGSGFDFDLQVHRGAGAYICGEETALMN 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +  PRLKPPFPA  GLYG PTT+NNVE+      IL+ GA W++  G E ++G K
Sbjct: 196 SLEGLRANPRLKPPFPAAAGLYGMPTTINNVETFCAATQILKYGADWHARMGTEKSKGMK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMR 299
           LF ISG V  P   E  +  TF EL+    GG     +++ A+IPGGSS P LP   +  
Sbjct: 256 LFQISGPVRRPGVYELPLGTTFRELVYDWAGGP---LEDIKAIIPGGSSCPMLPWDDRTL 312

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWM 358
              MDY+ +   GS LGT  V ++ ++  I+   W L  FY HESCG+CTPCREG +GWM
Sbjct: 313 DTPMDYESVAAAGSMLGTGGVTLIPKADCIVNVTWNLVRFYAHESCGKCTPCREGISGWM 372

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +R+ E+LV+G  Q  ++ L+ ++S NI GR+ CAL DA   P+   IK FR   
Sbjct: 373 VRMYEKLVRGHGQPGDVQLILDMSDNIGGRSFCALADACLGPVLSSIKLFREEY 426


>gi|320354167|ref|YP_004195506.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Desulfobulbus propionicus DSM 2032]
 gi|320122669|gb|ADW18215.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Desulfobulbus propionicus DSM 2032]
          Length = 538

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 151/422 (35%), Positives = 241/422 (57%), Gaps = 6/422 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +    L G +  +S+ D ++ G +  V + L E     +I  V+ SGLRGRGGA
Sbjct: 112 FFKRQHKNVLALSGRIDPESVDDYLAAGGYLAVVQALTEMRPSDVIRRVQESGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K   +   YL+ NADE +PG   DR I+   PH ++EG +IA++A+GA
Sbjct: 172 GYPTGLKWATVAKATGE-KKYLICNADEGDPGAFMDRSILESTPHAVLEGMIIAAYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + L+ A+ E      LG +      D+DI +  GAGA++CGEETA
Sbjct: 231 TSGYIYVRAEYPLAVKRLKLAIREAERLNFLGHAVCGSSLDLDIQLRLGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++S+EGK+G PR +PP+PA  GL+G PT +NNVE+ A VP I+  G    +  G E ++
Sbjct: 291 LIQSVEGKRGIPRPRPPYPAEQGLWGRPTLINNVETYANVPPIIAHGPEKLAALGTEQSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M ++  E++    GGI GG   L AV  GG S  C+PA  
Sbjct: 351 GTKVFALTGKIRNSGLIEVPMGMSLREIVFDIGGGIPGG-HALKAVQTGGPSGGCIPAEH 409

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    + ++ L+ +GS +G+  +IV+D +T+++  +     F   ESCGQCTPCR GT  
Sbjct: 410 L-DTPVSFESLRALGSIMGSGGMIVIDETTNMVDIVKYFMEFSMDESCGQCTPCRVGTAQ 468

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++    +  A   ++  L  +   ++  ++C LG +A  P+   ++ FR    +RI 
Sbjct: 469 IHHLLTLFQQSRATLLDLAKLEALCDLVKNTSLCGLGQSAPNPVLSTLRYFRQEYLDRIV 528

Query: 418 QY 419
            +
Sbjct: 529 AH 530


>gi|16330689|ref|NP_441417.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
 gi|1653181|dbj|BAA18097.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
 gi|1771717|emb|CAA66209.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
          Length = 533

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 148/411 (36%), Positives = 244/411 (59%), Gaps = 5/411 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
             N   +  +S+ + ++ G ++ + K++ E   + +I E+  SGLRGRGG G+ TG+KW+
Sbjct: 125 LENSGRIDPESIDEYIALGGYEQLHKVVYEMTPEEVIVEMNKSGLRGRGGGGYPTGLKWA 184

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
            + K+   +  Y++ NADE +PG   DR ++  +PH ++EG  IA++A+GA+  +IYVR 
Sbjct: 185 TVAKMP-GQQKYVICNADEGDPGAFMDRSVLESDPHRILEGMAIAAYAVGANHGYIYVRA 243

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    + LQ A+ +    GL+G+       D  I +  GAGA++CGEETAL+ S+EGK+
Sbjct: 244 EYPLAIQRLQKAIQQAKRYGLMGTQIFDSPIDFKIDIRVGAGAFVCGEETALIASVEGKR 303

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PR +PP+PA  GL+  PT +NNVE+ A V  I+R G  WY   G E ++GTK+F+++G
Sbjct: 304 GTPRPRPPYPAQSGLWQSPTLINNVETYANVVPIIREGGDWYGSIGTEKSKGTKVFALTG 363

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V     +E  M  T  +++E+  GG+  G   + AV  GG S  C+PA ++    ++YD
Sbjct: 364 KVENAGLIEVPMGTTVRQVVEEMGGGVPNGG-QVKAVQTGGPSGGCIPADKL-DTPIEYD 421

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L  +G+ +G+  +IVMD ST+++        F K ESCG+C PCR GT  +  ++ R +
Sbjct: 422 TLLALGTMMGSGGMIVMDESTNMVDVAQFYMDFCKSESCGKCIPCRAGTVQLYDLLTRFL 481

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +G A + ++  L  +   ++  ++C LG +A  P+   ++ FR   EE + 
Sbjct: 482 EGEATQEDLIKLENLCHMVKETSLCGLGMSAPNPVISTLRYFRHEYEELLK 532


>gi|16130219|ref|NP_416787.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12
           substr. MG1655]
 gi|82777692|ref|YP_404041.1| NADH dehydrogenase I subunit F [Shigella dysenteriae Sd197]
 gi|89109102|ref|AP_002882.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12
           substr. W3110]
 gi|110642488|ref|YP_670218.1| NADH dehydrogenase I subunit F [Escherichia coli 536]
 gi|170081901|ref|YP_001731221.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12
           substr. DH10B]
 gi|170680196|ref|YP_001744482.1| NADH dehydrogenase I subunit F [Escherichia coli SMS-3-5]
 gi|188495817|ref|ZP_03003087.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 53638]
 gi|191170009|ref|ZP_03031563.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli F11]
 gi|193062282|ref|ZP_03043377.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E22]
 gi|194427216|ref|ZP_03059767.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B171]
 gi|194436158|ref|ZP_03068260.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 101-1]
 gi|218700758|ref|YP_002408387.1| NADH dehydrogenase I subunit F [Escherichia coli IAI39]
 gi|238901459|ref|YP_002927255.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli BW2952]
 gi|253772794|ref|YP_003035625.1| NADH dehydrogenase I subunit F [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162293|ref|YP_003045401.1| NADH dehydrogenase I subunit F [Escherichia coli B str. REL606]
 gi|256017560|ref|ZP_05431425.1| NADH dehydrogenase I subunit F [Shigella sp. D9]
 gi|256022032|ref|ZP_05435897.1| NADH dehydrogenase I subunit F [Escherichia sp. 4_1_40B]
 gi|260844871|ref|YP_003222649.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O103:H2
           str. 12009]
 gi|260856328|ref|YP_003230219.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O26:H11
           str. 11368]
 gi|260869007|ref|YP_003235409.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O111:H-
           str. 11128]
 gi|293410644|ref|ZP_06654220.1| NADH oxidoreductase [Escherichia coli B354]
 gi|297519443|ref|ZP_06937829.1| NADH dehydrogenase I subunit F [Escherichia coli OP50]
 gi|300931363|ref|ZP_07146694.1| NADH oxidoreductase, F subunit [Escherichia coli MS 187-1]
 gi|300936849|ref|ZP_07151738.1| NADH oxidoreductase, F subunit [Escherichia coli MS 21-1]
 gi|300956456|ref|ZP_07168745.1| NADH oxidoreductase, F subunit [Escherichia coli MS 175-1]
 gi|300981074|ref|ZP_07175346.1| NADH oxidoreductase, F subunit [Escherichia coli MS 200-1]
 gi|301026954|ref|ZP_07190347.1| NADH oxidoreductase, F subunit [Escherichia coli MS 196-1]
 gi|301647619|ref|ZP_07247415.1| NADH oxidoreductase, F subunit [Escherichia coli MS 146-1]
 gi|307138948|ref|ZP_07498304.1| NADH dehydrogenase I subunit F [Escherichia coli H736]
 gi|309785012|ref|ZP_07679645.1| NADH oxidoreductase, F subunit [Shigella dysenteriae 1617]
 gi|312973457|ref|ZP_07787629.1| NADH oxidoreductase, F subunit [Escherichia coli 1827-70]
 gi|331642922|ref|ZP_08344057.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H736]
 gi|331653726|ref|ZP_08354727.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M718]
 gi|332278570|ref|ZP_08390983.1| NADH:ubiquinone oxidoreductase [Shigella sp. D9]
 gi|2506953|sp|P31979|NUOF_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F; AltName: Full=NUO6
 gi|1788620|gb|AAC75344.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12
           substr. MG1655]
 gi|1799645|dbj|BAA16113.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K12
           substr. W3110]
 gi|81241840|gb|ABB62550.1| NADH dehydrogenase I chain F [Shigella dysenteriae Sd197]
 gi|110344080|gb|ABG70317.1| NADH dehydrogenase I chain F [Escherichia coli 536]
 gi|169889736|gb|ACB03443.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli str. K-12
           substr. DH10B]
 gi|170517914|gb|ACB16092.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli SMS-3-5]
 gi|188491016|gb|EDU66119.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 53638]
 gi|190909525|gb|EDV69110.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli F11]
 gi|192931948|gb|EDV84547.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli E22]
 gi|194414837|gb|EDX31108.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli B171]
 gi|194424886|gb|EDX40871.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli 101-1]
 gi|218370744|emb|CAR18557.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli IAI39]
 gi|238861870|gb|ACR63868.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli BW2952]
 gi|242377917|emb|CAQ32686.1| NADH:ubiquinone oxidoreductase, chain F, subunit of soluble NADH
           dehydrogenase fragment and NADH:ubiquinone
           oxidoreductase I [Escherichia coli BL21(DE3)]
 gi|253323838|gb|ACT28440.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974194|gb|ACT39865.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli B str.
           REL606]
 gi|253978361|gb|ACT44031.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli
           BL21(DE3)]
 gi|257754977|dbj|BAI26479.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O26:H11
           str. 11368]
 gi|257760018|dbj|BAI31515.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O103:H2
           str. 12009]
 gi|257765363|dbj|BAI36858.1| NADH:ubiquinone oxidoreductase, chain F [Escherichia coli O111:H-
           str. 11128]
 gi|260448623|gb|ACX39045.1| NADH-quinone oxidoreductase, F subunit [Escherichia coli DH1]
 gi|291471112|gb|EFF13596.1| NADH oxidoreductase [Escherichia coli B354]
 gi|299879501|gb|EFI87712.1| NADH oxidoreductase, F subunit [Escherichia coli MS 196-1]
 gi|300307687|gb|EFJ62207.1| NADH oxidoreductase, F subunit [Escherichia coli MS 200-1]
 gi|300316726|gb|EFJ66510.1| NADH oxidoreductase, F subunit [Escherichia coli MS 175-1]
 gi|300458036|gb|EFK21529.1| NADH oxidoreductase, F subunit [Escherichia coli MS 21-1]
 gi|300460825|gb|EFK24318.1| NADH oxidoreductase, F subunit [Escherichia coli MS 187-1]
 gi|301074246|gb|EFK89052.1| NADH oxidoreductase, F subunit [Escherichia coli MS 146-1]
 gi|308927382|gb|EFP72856.1| NADH oxidoreductase, F subunit [Shigella dysenteriae 1617]
 gi|309702596|emb|CBJ01924.1| NADH-quinone oxidoreductase subunit F [Escherichia coli ETEC
           H10407]
 gi|310332052|gb|EFP99287.1| NADH oxidoreductase, F subunit [Escherichia coli 1827-70]
 gi|315136918|dbj|BAJ44077.1| NADH dehydrogenase I subunit F [Escherichia coli DH1]
 gi|315615553|gb|EFU96185.1| NADH oxidoreductase, F subunit [Escherichia coli 3431]
 gi|323156434|gb|EFZ42589.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli EPECa14]
 gi|323161618|gb|EFZ47503.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli E128010]
 gi|323176791|gb|EFZ62381.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli 1180]
 gi|323936574|gb|EGB32861.1| NADH oxidoreductase [Escherichia coli E1520]
 gi|323941019|gb|EGB37206.1| NADH oxidoreductase [Escherichia coli E482]
 gi|323961467|gb|EGB57077.1| NADH oxidoreductase [Escherichia coli H489]
 gi|323973011|gb|EGB68205.1| NADH oxidoreductase [Escherichia coli TA007]
 gi|324013176|gb|EGB82395.1| NADH oxidoreductase, F subunit [Escherichia coli MS 60-1]
 gi|331039720|gb|EGI11940.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli H736]
 gi|331048575|gb|EGI20651.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli M718]
 gi|332100922|gb|EGJ04268.1| NADH:ubiquinone oxidoreductase [Shigella sp. D9]
          Length = 445

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 238/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G +G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|271962160|ref|YP_003336356.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
 gi|270505335|gb|ACZ83613.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
          Length = 428

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 197/411 (47%), Positives = 260/411 (63%), Gaps = 9/411 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L      G +    K L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 16  NSFTLEGY---GDYSAARKALGMDPDAVIQAVKDSGLRGRGGAGFPTGMKWGFIPQ-GDG 71

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  +M   PH+L+EG +I S+AI A+ AFIYVRGE +     
Sbjct: 72  KPHYLVVNADESEPGTCKDIPLMMANPHSLVEGIIITSYAIRANHAFIYVRGEVLHVIRR 131

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQAAV E Y  GLLG +    G+D++++VH GAGAYICGEETALL+SLEG +GQPRLKPP
Sbjct: 132 LQAAVAEAYDKGLLGKDLFGSGFDLELVVHSGAGAYICGEETALLDSLEGYRGQPRLKPP 191

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVES+A VP+I+  GA W++G G E ++G  +FS+SGHV  P   
Sbjct: 192 FPAVAGLYASPTVVNNVESVASVPSIISNGAEWFAGMGTEKSKGFGIFSLSGHVTRPGQY 251

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL++   G        +    PGGSS P      +    +D++ +   GS 
Sbjct: 252 EAPLGITLRELLDMAGG--IREGHQIKFWTPGGSSTPIFTDEHL-DVPLDFESVGAKGSM 308

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V++RL KG   + +
Sbjct: 309 LGTRALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLKQVLKRLEKGQGTEED 368

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +  + +++ NI GR+ CALGD A  PI   +K FR    +   +   C F 
Sbjct: 369 LTTITDIADNILGRSFCALGDGATSPIHSSVKYFRDEYLKHF-EIGGCPFD 418


>gi|194289164|ref|YP_002005071.1| NADH:ubiquinone oxidoreductase complex i, chain f [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222999|emb|CAQ69004.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus
           taiwanensis LMG 19424]
          Length = 431

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/421 (49%), Positives = 273/421 (64%), Gaps = 8/421 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
           Q  I   L G     L D + RG +  + +IL +    + +I +VKASGLRGRGGAGF T
Sbjct: 10  QPLILAGLDG-NNWHLEDYVKRGGYQQLKRILTEKIPPEQVIADVKASGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMP+       YLV N DE EPGT KDRDI+R+ PH LIEG  I ++A+G    +
Sbjct: 69  GLKWSFMPRTFPG-QKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGAYAMGITVGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
            Y+ GE   E +  + A++E  A+G LG N    G+   +  HHG GAYICGEETALLES
Sbjct: 128 NYIHGEIWNEYKIFEEALEEARAAGFLGDNILGSGFSFQLHAHHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+
Sbjct: 188 LEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAVGPENYLKMGKPNNGGTKI 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FSISG V  P   E  +   F +L+E   G    G   + AVIPGGSS P +P   M  +
Sbjct: 248 FSISGDVERPGNYEIPLGTPFAKLLELAGGM--RGGKRIKAVIPGGSSAPVVPGDLMMAS 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ R+
Sbjct: 306 DMDYDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYFEESCGQCTPCREGTGWLYRM 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++    E  + ++ +
Sbjct: 366 VNRIEHGEGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWKEFEYHV-EHKQ 424

Query: 422 C 422
           C
Sbjct: 425 C 425


>gi|298246355|ref|ZP_06970161.1| NADH-quinone oxidoreductase, F subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297553836|gb|EFH87701.1| NADH-quinone oxidoreductase, F subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 443

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 193/409 (47%), Positives = 257/409 (62%), Gaps = 7/409 (1%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           G+   +L      G ++ + K L+   D I+ E+K SGLRGRGGAGF TGMKWSF+ K  
Sbjct: 16  GID--TLEVYRQNGGYEALAKALKSEPDQIVEEIKKSGLRGRGGAGFPTGMKWSFLAKN- 72

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D+P YL  N+DESEPGT KDR +M   PH L+EG +I S+A     AFIY+RGE     
Sbjct: 73  -DKPRYLCCNSDESEPGTFKDRMLMERNPHLLVEGVLITSYACRVKTAFIYIRGELPYAA 131

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           + +Q AVDE Y +GL+GSN     Y +D+IVH GAGAYICGEE+AL+ESLEG++G PRLK
Sbjct: 132 DQVQRAVDEAYEAGLIGSNILGSDYSIDVIVHRGAGAYICGEESALMESLEGRRGYPRLK 191

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA VGLYG PT +NN E++  VP I+ +G  +Y+ FG E ++GT++F +SGHV  P 
Sbjct: 192 PPFPAVVGLYGGPTVINNCETLCTVPAIIEQGGEYYASFGTEKSKGTRIFGLSGHVKKPG 251

Query: 253 TVEESMSITFDELIEKHC-GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             E ++ I    L+     GG       + AVIPGGSS   L   ++    MDY+ +   
Sbjct: 252 NYEVALGIPLRTLLYDEQYGGGILNDRQVKAVIPGGSSTFFLGPDKL-DIPMDYESVAAA 310

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LG+  VIV++  T I+  I R   FY+ ESCG+CTPCREGT W+  ++ERL  G  +
Sbjct: 311 GSMLGSGGVIVINDETCIVGTIARAVEFYRDESCGKCTPCREGTYWLTELLERLEHGHGK 370

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            ++IDLL  +  NI G++ C LGDAA   I   ++ FR   E  +   H
Sbjct: 371 MKDIDLLTSICGNISGKSFCPLGDAATSLITSGVRMFREEFEYHVTHGH 419


>gi|320178743|gb|EFW53706.1| NADH-ubiquinone oxidoreductase chain F [Shigella boydii ATCC 9905]
          Length = 445

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 239/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGALKALTRLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|330817787|ref|YP_004361492.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Burkholderia
           gladioli BSR3]
 gi|327370180|gb|AEA61536.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Burkholderia
           gladioli BSR3]
          Length = 439

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 202/416 (48%), Positives = 269/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I  NL G     L D ++RG +  + +I+E+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILANLNGEN-WRLEDYVARGGYKQLRRIIEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH++IEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHSVIEGMAIGAYAMGITAGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        + A++E  A+G LG+N     +   +  HHG GAY+CGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEEALEEARAAGYLGNNILGSEFSFQLHAHHGYGAYVCGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK++S+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNAETFAAVPFLLTVGPQAYLEIGKPNNGGTKIYSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   L AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEVPLGTPFAALLELAGGM--RGGRKLKAVIPGGSSAPVIPGEMMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV++R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLMRLSYFYHEESCGQCTPCREGTGWLYRVVKR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  +  ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IENGEGRVEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|16765651|ref|NP_461266.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56412779|ref|YP_149854.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|161502531|ref|YP_001569643.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161612948|ref|YP_001586913.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549677|ref|ZP_02343436.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167994672|ref|ZP_02575763.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229693|ref|ZP_02654751.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237341|ref|ZP_02662399.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168242442|ref|ZP_02667374.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168261660|ref|ZP_02683633.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168465973|ref|ZP_02699843.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168817946|ref|ZP_02829946.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194443680|ref|YP_002041584.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451801|ref|YP_002046377.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469483|ref|ZP_03075467.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736167|ref|YP_002115393.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249657|ref|YP_002147282.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197361713|ref|YP_002141349.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198242534|ref|YP_002216394.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|204929246|ref|ZP_03220389.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205353439|ref|YP_002227240.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857742|ref|YP_002244393.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224583190|ref|YP_002636988.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912397|ref|ZP_04656234.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|20141542|sp|P33901|NUOF_SALTY RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|16420865|gb|AAL21225.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|56127036|gb|AAV76542.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|160863878|gb|ABX20501.1| hypothetical protein SARI_00575 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161362312|gb|ABX66080.1| hypothetical protein SPAB_00654 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402343|gb|ACF62565.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194410105|gb|ACF70324.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455847|gb|EDX44686.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194711669|gb|ACF90890.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195631228|gb|EDX49788.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197093189|emb|CAR58633.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213360|gb|ACH50757.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197289714|gb|EDY29077.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197937050|gb|ACH74383.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|204321790|gb|EDZ06989.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205273220|emb|CAR38183.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325480|gb|EDZ13319.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205327504|gb|EDZ14268.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335912|gb|EDZ22676.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205338467|gb|EDZ25231.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205344967|gb|EDZ31731.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205349424|gb|EDZ36055.1| NADH oxidoreductase (quinone), f subunit [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709545|emb|CAR33890.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467717|gb|ACN45547.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247530|emb|CBG25357.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994419|gb|ACY89304.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158882|emb|CBW18395.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913315|dbj|BAJ37289.1| NADH dehydrogenase subunit F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086758|emb|CBY96530.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|322617070|gb|EFY13976.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617624|gb|EFY14523.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624746|gb|EFY21575.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630295|gb|EFY27065.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634476|gb|EFY31209.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639186|gb|EFY35878.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640049|gb|EFY36716.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645730|gb|EFY42254.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651506|gb|EFY47881.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656065|gb|EFY52364.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659418|gb|EFY55665.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665878|gb|EFY62061.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669882|gb|EFY66023.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673868|gb|EFY69965.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678626|gb|EFY74682.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683578|gb|EFY79592.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687654|gb|EFY83624.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323130655|gb|ADX18085.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323193512|gb|EFZ78717.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198417|gb|EFZ83519.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201931|gb|EFZ86993.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208531|gb|EFZ93470.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209760|gb|EFZ94684.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218296|gb|EGA03006.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222947|gb|EGA07296.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227382|gb|EGA11547.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232291|gb|EGA16394.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235675|gb|EGA19759.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241164|gb|EGA25200.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244906|gb|EGA28908.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250025|gb|EGA33919.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251637|gb|EGA35505.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254948|gb|EGA38739.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260328|gb|EGA43947.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268096|gb|EGA51573.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270811|gb|EGA54249.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326624145|gb|EGE30490.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628531|gb|EGE34874.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|332989257|gb|AEF08240.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 445

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 169/406 (41%), Positives = 237/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+++VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|194433349|ref|ZP_03065629.1| NADH-quinone oxidoreductase, F subunit [Shigella dysenteriae 1012]
 gi|194418443|gb|EDX34532.1| NADH-quinone oxidoreductase, F subunit [Shigella dysenteriae 1012]
 gi|332088414|gb|EGI93532.1| NADH oxidoreductase (quinone), F subunit [Shigella boydii 5216-82]
 gi|332090604|gb|EGI95700.1| NADH oxidoreductase (quinone), F subunit [Shigella dysenteriae
           155-74]
          Length = 445

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 239/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGALKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|255533958|ref|YP_003094330.1| NADH-quinone oxidoreductase subunit F [Pedobacter heparinus DSM
           2366]
 gi|255346942|gb|ACU06268.1| NADH-quinone oxidoreductase, F subunit [Pedobacter heparinus DSM
           2366]
          Length = 454

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/426 (48%), Positives = 265/426 (62%), Gaps = 18/426 (4%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           N+ G+   +L     +G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+
Sbjct: 11  NVPGIN--TLDVYRQKGGYRAVEKALKTLTPDDVVEEVKKSGLRGRGGAGFPTGMKWSFL 68

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            K     P YLV NADESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE 
Sbjct: 69  AK-PDGVPRYLVCNADESEPGTFKDRYLMTHIPHALIEGMIVSSFALGANTSYIYVRGEM 127

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           + +   L+ A+ E   +G LG N    GYD+++ V  G GAYICGEETALLESLEGK+G 
Sbjct: 128 MPQIRILEKAIAEAKNAGFLGKNILGSGYDLELYVQPGGGAYICGEETALLESLEGKRGN 187

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR+KPPFPA  GLYGCPT VNNVESIA V  I+  G   Y+  G   + GTKL S SG++
Sbjct: 188 PRIKPPFPAIAGLYGCPTVVNNVESIAAVVPIVNDGGEEYAKIGIGRSTGTKLISASGNL 247

Query: 249 NYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA----- 301
             P   E  + +  +E I   + CGGI      L A + GGSSVP LPA           
Sbjct: 248 VRPGVYEIELGLPVEEFIYSDEWCGGIA-NGKRLKATVAGGSSVPVLPANLTLKLANGEP 306

Query: 302 -IMDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +M Y+ L       G+ +G+   I  D    I++  W  S FY HESCGQC+PCREGTG
Sbjct: 307 RLMSYESLSEGGFATGTMMGSGGFIAFDEDQCIVRNTWNFSRFYHHESCGQCSPCREGTG 366

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           WM +V+ RL  G  +  +IDLL +VSK IEG TIC LGDAAAWP+   I++FR   E  +
Sbjct: 367 WMEKVLHRLEYGHGKMSDIDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFEWHV 426

Query: 417 DQYHRC 422
            +  +C
Sbjct: 427 KEPVKC 432


>gi|325105662|ref|YP_004275316.1| NADH dehydrogenase subunit F [Pedobacter saltans DSM 12145]
 gi|324974510|gb|ADY53494.1| NADH dehydrogenase subunit F [Pedobacter saltans DSM 12145]
          Length = 454

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 200/410 (48%), Positives = 261/410 (63%), Gaps = 16/410 (3%)

Query: 23  SMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
              +G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+ K     P YLV
Sbjct: 21  YKEKGGYRAVEKALKTMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYLV 79

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
            N DESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE + +   L+ A+ 
Sbjct: 80  CNGDESEPGTFKDRFLMTHIPHALIEGMIVSSFALGANTSYIYVRGEMMPQIRILEKAIA 139

Query: 142 ECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
           E   +G LG N     +D+++ V  G GAYICGEETALLESLEGK+G PR+KPPFPA  G
Sbjct: 140 EAKEAGYLGKNILGSDFDLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFPAIAG 199

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           LY CPT VNNVESIA    I+  G   Y+  G   + GTKL S SG++N P   E  + +
Sbjct: 200 LYNCPTVVNNVESIAATVPIINDGGEEYAKIGIGRSTGTKLISASGNINKPGVYEIELGV 259

Query: 261 TFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDGLK--- 309
           + ++ I   ++CGGI  G   L AV+ GGSSVP LPA  +         +M Y+ L    
Sbjct: 260 SVEDFIYSDEYCGGIANG-KRLKAVVAGGSSVPILPANLILNLVNGDKRLMTYESLSDGG 318

Query: 310 -EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
              G+ LG+   IVMD    +++  W  S FY HESCGQC+PCREGTGWM +++ ++  G
Sbjct: 319 FATGTMLGSGGFIVMDEDQCVVRNTWNFSRFYNHESCGQCSPCREGTGWMTKILHKIETG 378

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
                +IDLL +VSK IEG TIC LGDAAAWP+   +++FR   E  I++
Sbjct: 379 KGSYSDIDLLVDVSKQIEGNTICPLGDAAAWPVASAVRHFRDEFEWHINE 428


>gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
 gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
          Length = 626

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 161/426 (37%), Positives = 237/426 (55%), Gaps = 8/426 (1%)

Query: 1   MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
           +  +QD  I   +   +  S+ D ++RG ++++ K L     + II  VKASGLRGRGG 
Sbjct: 141 LFKNQDFYIMEAIGESECDSIEDYIARGGYESLVKALTSMTPEEIIETVKASGLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW +  K   D   ++V N DE +PG   +R ++  +PH ++EG +IA +A+GA
Sbjct: 201 GFPTGLKWEYTGKARGD-LKFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYAVGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+       + A+++    GLLG N    G+  D+ V  GAGA++CGEETA
Sbjct: 260 QKGYAYIRAEYPFAVRMFKKAIEDAKKMGLLGENILGTGFSFDVEVKEGAGAFVCGEETA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EGK+G PR KPPFPA  GL G PT +NNVE+ A VP +LR G   Y   G EN+ 
Sbjct: 320 LLASIEGKRGMPRPKPPFPAQSGLLGKPTLINNVETYANVPRVLRDGVEEYRKRGTENSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E     T  E+I   CGG     +   AV  GG S  CL    
Sbjct: 380 GTKMFSVAGPLKATGIIEVEFGTTLREIIYNICGGF-VEGEEFKAVQIGGPSGACLSEDF 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK+  + +G+  ++V+ + T +++       F K ESCG+C PCREGT  
Sbjct: 439 L-DMPLDYDTLKKADAMVGSGGIVVITKKTCMVEVARFFLDFTKRESCGKCVPCREGTMQ 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
              ++E+   G A   +++ L  +SK I+  ++C LG  A  PI   +K FR      I+
Sbjct: 498 AYNILEKFTHGKATYEDLETLEHLSKTIKTASLCGLGKTAPNPILSTLKLFRDEYIAHIE 557

Query: 418 QYHRCN 423
               C 
Sbjct: 558 --GECP 561


>gi|300948572|ref|ZP_07162665.1| NADH oxidoreductase, F subunit [Escherichia coli MS 116-1]
 gi|300451920|gb|EFK15540.1| NADH oxidoreductase, F subunit [Escherichia coli MS 116-1]
          Length = 445

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 171/406 (42%), Positives = 238/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I+SFA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISSFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G +G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|146312470|ref|YP_001177544.1| NADH dehydrogenase I subunit F [Enterobacter sp. 638]
 gi|145319346|gb|ABP61493.1| NADH dehydrogenase subunit F [Enterobacter sp. 638]
          Length = 445

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 171/407 (42%), Positives = 238/407 (58%), Gaps = 5/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYQSKNGYEGARKALAGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   E
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAE 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE++  VP IL  G  WY       + GTKL   SG V  P  
Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISTSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q 
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQQ 426


>gi|156741350|ref|YP_001431479.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
 gi|156232678|gb|ABU57461.1| NADH dehydrogenase (quinone) [Roseiflexus castenholzii DSM 13941]
          Length = 532

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 153/421 (36%), Positives = 249/421 (59%), Gaps = 7/421 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T Q RI   N   +  + +   ++ G +  +  +L +     +I+ V  SGLRGRGGA
Sbjct: 111 FFTLQKRIVLENSGIIDPERIESYIAAGGYQALYCVLHDMTPAEVIDVVTRSGLRGRGGA 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K   D   Y+V NADE +PG   DR I+  +PH ++EG  IA++A+GA
Sbjct: 171 GYPTGLKWATVAKSHGD-RKYVVCNADEGDPGAFMDRSIIESDPHKILEGMAIAAYAVGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + LQ A+ +    GLLG+     G+   I +  GAGA++CGEETA
Sbjct: 230 DQGYVYVRAEYPLAIQRLQRAIAQARRLGLLGAQIFDAGFTFRIDIRVGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++GQPR +PP+PA  GL+G PT +NNVE+ A +P I+R GA W++  G E+++
Sbjct: 290 LMASIEGRRGQPRPRPPYPAESGLWGRPTLINNVETFANIPPIIRNGAEWFAAIGAEHSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G + +   +E  M +T  +++E+  GG+  G   + AV  GG S  C+PA  
Sbjct: 350 GTKVFALTGKIRHTGLIEVPMGVTLRQIVEEMGGGVPEG--RVKAVQTGGPSGGCIPAA- 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L+ +GS +G+  ++VMD +T+++        F K ESCG+C PCR GT  
Sbjct: 407 LLDTPVDYESLQRVGSIMGSGGMVVMDDATNMVDVAHFYMEFCKDESCGKCIPCRAGTAQ 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++  +  G A   ++  L ++   ++  ++C LG +A  P+   +K FR   E  + 
Sbjct: 467 MLHMLNLIRSGQATAADLARLEQLCIMVKETSLCGLGQSAPNPVLSTMKYFREEYEAFVR 526

Query: 418 Q 418
            
Sbjct: 527 D 527


>gi|296103965|ref|YP_003614111.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058424|gb|ADF63162.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295098077|emb|CBK87167.1| NADH dehydrogenase subunit F [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 445

 Score =  469 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 172/406 (42%), Positives = 238/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L     D I+N VK SGL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYQSKNGYAGARKALGGMAPDDIVNAVKESGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   E
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAE 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G     + GTKL   SG V  P  
Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGISSSKDAGTKLMGFSGRVKNPGV 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  + +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRAIERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQ 425


>gi|308232349|ref|ZP_07664059.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu001]
 gi|308371245|ref|ZP_07667116.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu003]
 gi|308372437|ref|ZP_07667377.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu004]
 gi|308380584|ref|ZP_07490464.2| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu011]
 gi|308214179|gb|EFO73578.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu001]
 gi|308329370|gb|EFP18221.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu003]
 gi|308333199|gb|EFP22050.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu004]
 gi|308361023|gb|EFP49874.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu011]
          Length = 422

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 203/413 (49%), Positives = 268/413 (64%), Gaps = 11/413 (2%)

Query: 20  LSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD- 75
           ++          +  + K L    D +I+ VK SGLRGRGGAGF+TG KWSF+P+  +  
Sbjct: 1   MATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA 60

Query: 76  --RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
             +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI AH AF+YVRGE +   
Sbjct: 61  AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL 120

Query: 134 ESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             L  AV E YA+G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+
Sbjct: 121 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 180

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P 
Sbjct: 181 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG 240

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+   G
Sbjct: 241 QYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAAG 297

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G    
Sbjct: 298 SMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSH 357

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            +ID L ++S +I G++ CALGD AA P+   IK+FR      + +   C F 
Sbjct: 358 EDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHV-EGGGCPFD 409


>gi|157144785|ref|YP_001452104.1| NADH dehydrogenase I subunit F [Citrobacter koseri ATCC BAA-895]
 gi|157081990|gb|ABV11668.1| hypothetical protein CKO_00512 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 238/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 595

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 231/426 (54%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +    +  + K L E     +I+E+K SGLRGRGG 
Sbjct: 110 FYKKQMRIALRNCGLINPENIEEYLGNRGYMALGKCLNEMNPQSVIDEMKLSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F     +D   Y+V NADE +PG   DR I+  +PH++IE   I  ++ GA
Sbjct: 170 GFPTGLKWQFAANNSAD-QKYVVCNADEGDPGAFMDRSILEGDPHSVIEAMAICGYSTGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+D+    GLLG N    G+D DI + +GAGA++CGEETA
Sbjct: 229 SKGLVYIRAEYPLAINRLKKAMDDAREYGLLGKNILGSGFDFDIEIKYGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G+P  KPPFPA  G +G PT VNNVE+ A +P I+  G  W+   G E + 
Sbjct: 289 LIHSMEGERGEPTSKPPFPAESGYWGKPTNVNNVETFANIPEIILNGGEWFKSIGTEKSS 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M  T  E+I +  GGI        AV  GG S  CL    
Sbjct: 349 GTKVFALAGKINNVGLVEVPMGTTLREVIFEIGGGI-SNGKKFKAVQTGGPSGGCLTERD 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 408 L-DTPIDFDSLLAKGSMMGSGGMIVMDEDNCMVAVSKFYLEFTVEESCGKCTPCRIGNTR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++++ KG     +++LL E+S+ I+  ++C LG  A  PI   +  F       + 
Sbjct: 467 LYEILDKITKGNGTLEDLELLKELSETIKDTSLCGLGQTAPNPILSTLDQFWDEYVAHVV 526

Query: 418 QYHRCN 423
              RC 
Sbjct: 527 D-KRCP 531


>gi|326202423|ref|ZP_08192292.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325987541|gb|EGD48368.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 575

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 146/421 (34%), Positives = 234/421 (55%), Gaps = 6/421 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + +S+ ++ G +  + K L     D +++ VK SGLRGRGG 
Sbjct: 138 FYKKQLRVALRNCGLINPEDISEYIALGGYQALGKALTQMSADEVVDTVKKSGLRGRGGG 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K   D+  +++ NADE +PG   DR I+  +PH++IE   I ++AIGA
Sbjct: 198 GFPTGLKWEITRKQQ-DKEKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    E L  A+++    GLLG       ++ DI + +GAGA++CGEETA
Sbjct: 257 DKGIVYIRAEYPLAIERLTKALEQARELGLLGKGIFGTDFNFDITLKYGAGAFVCGEETA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S EGK+G+P  KPP+PA  G +G PT VNNVE+ A +P I+ +GA W++  G E ++
Sbjct: 317 LINSCEGKRGEPNYKPPYPAEEGYWGHPTCVNNVETFANIPVIMTKGAEWFASMGTEKSK 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M IT  E+I    GGI        AV  GG S   +    
Sbjct: 377 GTKVFALAGKINNVGLVEVPMGITLREIIFDIGGGIP-HGKKFKAVQTGGPSGGVITEKN 435

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYDGL ++G+ +G+  +IVMD   +++        F   E+CG+C P R GT  
Sbjct: 436 L-DTPIDYDGLLKIGTMMGSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCAPGRIGTKR 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ ++  G A   ++D L +++  ++  ++C L   A  P+   +K+F     + + 
Sbjct: 495 LFEMLHKIASGEATMDDLDALKQLAYMVKDSSLCGLCQTAPNPVVSTMKHFWNEYLDLVK 554

Query: 418 Q 418
            
Sbjct: 555 D 555


>gi|325954439|ref|YP_004238099.1| NADH-quinone oxidoreductase, F subunit [Weeksella virosa DSM 16922]
 gi|323437057|gb|ADX67521.1| NADH-quinone oxidoreductase, F subunit [Weeksella virosa DSM 16922]
          Length = 453

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/431 (48%), Positives = 276/431 (64%), Gaps = 15/431 (3%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64
           Q  +  N+     +        G + N +K  +   + I+ EVK SGLRGRGGAGF TGM
Sbjct: 3   QKLLLKNIDVPGIRHYQVYRENGGYSNAEKAFKMKEEEILEEVKTSGLRGRGGAGFPTGM 62

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KWSF+ K     P +LVVNADESEPGT KDR +M + PH LIEG +I+SF +G++ +FIY
Sbjct: 63  KWSFLAK-PEGVPRHLVVNADESEPGTFKDRYLMEYIPHLLIEGILISSFCLGSNTSFIY 121

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           +RGE+    E L+ A+DE  A+G LG N    G+D+++ V  GAGAYICGEETALLESLE
Sbjct: 122 IRGEYAWIAEILEQAIDEAKAAGWLGKNIQGTGFDLEVYVQRGAGAYICGEETALLESLE 181

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+G PR+KPPFPA  GL+G PT VNNVE+IA V  I+  G   YS  G   + GTKL S
Sbjct: 182 GKRGNPRIKPPFPAVKGLWGRPTVVNNVETIASVVPIIEIGGDAYSKIGVGRSTGTKLIS 241

Query: 244 ISGHVNYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
             G++N P   E  M+IT +E I   ++CGGI  G   L A IPGGSSVP LPA  +   
Sbjct: 242 ACGNINKPGVYEIDMTITVEEFIYSDEYCGGIANG-KRLKACIPGGSSVPILPANLLLRT 300

Query: 302 I------MDYDGLKE----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351
                  M+Y+ L E     G+ +G+   IV+D   DI+   + L+ FY+HESCGQC+PC
Sbjct: 301 TNGQPRYMNYESLAEGGFQSGTMMGSGGFIVLDEDQDIVYHTYTLARFYRHESCGQCSPC 360

Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411
           REGTGWM ++++R+ +G  +  +I+LL+++ + IEG TIC LGDAAAWP+   I++FR  
Sbjct: 361 REGTGWMEKLLKRIDEGKGKISDIELLWDIQRKIEGNTICPLGDAAAWPVASAIRHFRDE 420

Query: 412 IEERIDQYHRC 422
            E  I+    C
Sbjct: 421 FEWHINHPEEC 431


>gi|312131899|ref|YP_003999239.1| NADH dehydrogenase subunit f [Leadbetterella byssophila DSM 17132]
 gi|311908445|gb|ADQ18886.1| NADH dehydrogenase subunit F [Leadbetterella byssophila DSM 17132]
          Length = 446

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 206/427 (48%), Positives = 265/427 (62%), Gaps = 17/427 (3%)

Query: 7   RIFTNLYGLQG-KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGM 64
           +I T    + G  +       G +  V+K L+    D ++ EVK SG+RGRGGAGF  GM
Sbjct: 4   KILTEHIHIPGINTFEVYRKHGGYSAVEKALKTMSPDEVVEEVKKSGIRGRGGAGFPMGM 63

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KWSF+ K     P YLV N DESEPGT KD  +M++ PH LIEG +++SFA+GA+ +FIY
Sbjct: 64  KWSFLAK-PEGVPRYLVCNGDESEPGTFKDHYLMKNIPHLLIEGMIVSSFALGANKSFIY 122

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           VRGE +     L+ A++E  A+G LG N    GYD++++V  G GAYICGEETALLESLE
Sbjct: 123 VRGELMYVIRILEKAIEEAKAAGFLGKNILGTGYDLELVVQPGGGAYICGEETALLESLE 182

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+G PR KPPFPA  GLY  PT VNNVESIA  P I+  G   Y+  G   + GTKL S
Sbjct: 183 GKRGNPRNKPPFPAVKGLYESPTVVNNVESIANTPWIVNNGGDAYASIGIGRSTGTKLIS 242

Query: 244 ISGHVNYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
            SG+V  P   E  + +  +E I   ++ GGIR     L AV+ GGSSVP LPA  +   
Sbjct: 243 ASGNVKKPGVYEIELGVPVEEFIYSDEYLGGIR-DGHYLKAVVAGGSSVPILPANLILKT 301

Query: 302 ------IMDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351
                 +M Y+ L       G+ LG+   IVMD +  I++  W  S FY HESCGQC+PC
Sbjct: 302 AGGEQRLMTYESLSDGGFATGTMLGSGGFIVMDETNCIVRNTWNFSRFYHHESCGQCSPC 361

Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411
           REGTGW+ +V+ R+  G   +R+IDLL +V+K IEG TIC LGDAAAWP+   I++FR  
Sbjct: 362 REGTGWLEKVLYRIEHGQGNERDIDLLVDVAKRIEGNTICPLGDAAAWPVGSAIRHFRDE 421

Query: 412 IEERIDQ 418
            E  I  
Sbjct: 422 FEWHIKN 428


>gi|256831784|ref|YP_003160511.1| NADH-quinone oxidoreductase, F subunit [Jonesia denitrificans DSM
           20603]
 gi|256685315|gb|ACV08208.1| NADH-quinone oxidoreductase, F subunit [Jonesia denitrificans DSM
           20603]
          Length = 448

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 200/403 (49%), Positives = 250/403 (62%), Gaps = 5/403 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  ++   +  G ++ + K L      I+ EVK SGLRGRGGAGF TGMKW F+P     
Sbjct: 18  QSWTMDTYLDHGGYEGLKKALTMDPAAIVQEVKDSGLRGRGGAGFPTGMKWGFLPPDDGG 77

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YLVVNADESEPGTCKD  +M   P  LIEG +I SFAIG   AFIYVRGE +     
Sbjct: 78  -PRYLVVNADESEPGTCKDIPLMMATPQFLIEGVIITSFAIGCRHAFIYVRGEVVHVYRR 136

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV+E Y  G LG N    GY +D+ VH GAGAYICGEETALL+SLEG++GQPRLKPP
Sbjct: 137 LLKAVEEAYDRGFLGDNILGSGYSLDVTVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 196

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVES+A VP I+ RGASW++  G E + G  LFS+SGHV  P   
Sbjct: 197 FPAVAGLYARPTVVNNVESVASVPQIIARGASWFTSLGTEKSAGHGLFSLSGHVERPGQY 256

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL++   G    G   L    PGGSS P   A  +    +DY+ +   GS 
Sbjct: 257 EAPLGITLRELLDMAGG--IRGGRQLKFWTPGGSSTPIFTADHL-DTPLDYESVGAAGSM 313

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ R+  G   + +
Sbjct: 314 LGTRALQIFDDTTSVVRAVTRWTEFYAHESCGKCTPCREGTYWLKQVLRRIEAGQGTQGD 373

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           I+ L ++  NI GR  CALGD A   I   I+ FR   E  + 
Sbjct: 374 IEKLLDLCDNILGRAFCALGDGATSCITSAIQYFRDEFEAGMH 416


>gi|310828875|ref|YP_003961232.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
 gi|308740609|gb|ADO38269.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
          Length = 586

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 158/428 (36%), Positives = 240/428 (56%), Gaps = 7/428 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
           M+  Q R+   N   +  + + D ++   +   +K + E   + IIN VK +GL GRGGA
Sbjct: 100 MIAKQKRVVLQNCGIIDPERIEDYLAVDGYKAAEKAIKEMSPEDIINTVKVAGLAGRGGA 159

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  KW+   K   D   YLV NADE +PG   DR ++  +PH LIEG +IA+ AIGA
Sbjct: 160 GFPTWFKWNEAHKAKGD-VKYLVCNADEGDPGAFMDRSVLESDPHALIEGMIIAAKAIGA 218

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +YVR E+    + L+ A+ +    G LG N     +  D+ +  GAGA++CGEETA
Sbjct: 219 AQGVVYVRAEYPLAIKRLENAIGQAREKGYLGENIFGSAFSFDLRIKAGAGAFVCGEETA 278

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PRLKPPFPA  G +  PT +NNVE+ A VP I R     Y   G EN++
Sbjct: 279 LIASLEGERGMPRLKPPFPAQKGYWAKPTNINNVETYANVPWIFRNSGETYGQLGNENSK 338

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     VE  M +T  ++I    GGI+       AV  GG S  C+PA  
Sbjct: 339 GTKVFALTGKIKKGGLVEIPMGLTLRDVIYDIGGGIKND-KAFKAVQMGGPSGGCVPAE- 396

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +   ++DY  + + G+ +G+  ++VMD +T ++        F + ESCG+C  CR GT  
Sbjct: 397 LVDTVIDYPSITKTGAIMGSGGMVVMDETTCMVDMARFFLDFTRKESCGKCNYCRIGTMR 456

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+ +G  +  +I+LL E+   ++  ++C LG  A  P+   ++ FR   E+ I 
Sbjct: 457 MLEILTRITEGEGRDGDIELLEELCLKVKEGSMCGLGQTAPNPVLTTLRYFRNEYEDHIY 516

Query: 418 QYHRCNFQ 425
           + H+C   
Sbjct: 517 K-HKCTAH 523


>gi|261820796|ref|YP_003258902.1| NADH dehydrogenase I subunit F [Pectobacterium wasabiae WPP163]
 gi|261604809|gb|ACX87295.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium wasabiae
           WPP163]
          Length = 449

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 173/409 (42%), Positives = 244/409 (59%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L D  S+  +    K L    +D +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDDYRSKNGYAAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M  EPH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 NLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP I+  GA+WY G   G+  + GTKL   SG V  P
Sbjct: 203 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTESHL-DLPMDFEHIAKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS +GTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L  G  Q
Sbjct: 321 GSRMGTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I + 
Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQ 429


>gi|281358699|ref|ZP_06245176.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281314825|gb|EFA98861.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 634

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 158/430 (36%), Positives = 240/430 (55%), Gaps = 10/430 (2%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGAG 59
               Q R+      ++   + + ++RG +    K  LE   + +      SGLRGRGG G
Sbjct: 143 FYNRQKRVVLANCRVEPSCVREYIARGGYFGARKAILEMKPEEVCQTAIDSGLRGRGGGG 202

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW F     +D   Y++ N DE +PG   DR +M   PH++IEG +IA+ AIGA 
Sbjct: 203 FPTGLKWKFTLASQND-KKYVICNGDEGDPGAFMDRSVMEGNPHSVIEGMMIAARAIGAD 261

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             ++YVR E+    E ++AAV +   +GLLG +     +   + V  GAGA++CGEETAL
Sbjct: 262 EGYVYVRAEYPLAVERMRAAVKDAEEAGLLGDHLFGSDFSFKVTVMEGAGAFVCGEETAL 321

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EGK+G PR KPPFPA  GL+G PT +NNVE++A VP I   G   Y   G E + G
Sbjct: 322 IASIEGKRGMPRPKPPFPAQSGLWGKPTVINNVETLASVPGIFLNGPEQYKAVGTEKSPG 381

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW-----DNLLAVIPGGSSVPCL 293
           TK F+++GHV     +E     T  E+I    GG+         ++  AV  GG S  CL
Sbjct: 382 TKTFALTGHVANTGLIEVPFGTTLREIIYNIGGGVTNNKGEVTTEDFKAVQIGGPSGGCL 441

Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353
               M    +D+D LK  G+ +G+  ++VM++ T I+K       F ++ESCG+C PCRE
Sbjct: 442 TPD-MLDLPLDFDSLKSAGAMVGSGGLVVMNKETCIVKIARFFMQFTQNESCGKCVPCRE 500

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           GT  M+ +++ +++G A ++ ++LL E +K ++  ++CALG  A  P+   ++ FR   E
Sbjct: 501 GTKQMLAMLDDIIEGRADRKTLELLEETAKAVQLGSLCALGKTAPNPVLSTLRFFREEYE 560

Query: 414 ERIDQYHRCN 423
             + +   C 
Sbjct: 561 AHVFK-KICP 569


>gi|62180894|ref|YP_217311.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128527|gb|AAX66230.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715373|gb|EFZ06944.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 445

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 168/402 (41%), Positives = 236/402 (58%), Gaps = 5/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  S+  ++   K L     D I+++VK +GL+GRGGAGFSTG+KWS MPK  S    
Sbjct: 26  LDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIR 85

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I     L+ 
Sbjct: 86  YLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRR 145

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 146 AIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 205

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P   E  
Sbjct: 206 TSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELP 265

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS LGT
Sbjct: 266 FGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGT 323

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ 
Sbjct: 324 ALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIET 383

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 384 LEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|171058190|ref|YP_001790539.1| NADH-quinone oxidoreductase subunit F [Leptothrix cholodnii SP-6]
 gi|170775635|gb|ACB33774.1| NADH-quinone oxidoreductase, F subunit [Leptothrix cholodnii SP-6]
          Length = 452

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 211/422 (50%), Positives = 269/422 (63%), Gaps = 12/422 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGAGFS 61
           I+  L G     L+D  +RG +  + KIL          D +I EVK SGLRGRGGAGF 
Sbjct: 30  IYAGLNGKN-WRLADYEARGGYQALRKILGADGGEGMTADQVIAEVKGSGLRGRGGAGFP 88

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       YLV N+DE EPGTCKDRDI+R+ PH +IEG +IA++A+G    
Sbjct: 89  TGLKWSFMPRALP-VQKYLVCNSDEGEPGTCKDRDILRYNPHIVIEGMIIAAYAMGITVG 147

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE     E  + A++E  A+G LG+      +   +   HG GAYICGEETALLE
Sbjct: 148 YNYIHGEIFDAYERFEEALEEARAAGYLGNQILGSRHTFQLHAFHGFGAYICGEETALLE 207

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK
Sbjct: 208 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGPAYLECGKPNNGGTK 267

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G V  P   E  M   F  L+E        G   L AVIPGGSS P LPA  M  
Sbjct: 268 IFSMVGDVERPGNYEIPMGTPFSTLLELAG--GVKGGKKLKAVIPGGSSSPVLPADVMMA 325

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD +  ++K++ RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 326 CTMDYDSISKAGSMLGSGAVIVMDDTRCMVKSLLRLSYFYSHESCGQCTPCREGTGWLWR 385

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++R+  G  +  ++ LL  V++NI GRTICALGDAAA P++ ++K+FR      I ++ 
Sbjct: 386 IVDRIEHGHGRAEDLALLDNVAENIMGRTICALGDAAAMPVRAMLKHFRHEFVHHI-EHK 444

Query: 421 RC 422
            C
Sbjct: 445 TC 446


>gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 624

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 241/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R +F     +   SL D +  G +  ++K+L     D +++E+K SGLRGRGG 
Sbjct: 137 FYKKQLRLVFGTNGYIDPTSLDDYIQAGGYQALNKVLSSMSPDEVVDEIKISGLRGRGGG 196

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF+TG KW    +   +   Y++ N DE +PG   DR +M   PH++IEG VIA++A+GA
Sbjct: 197 GFATGAKWEITREAPGE-LKYVICNCDEGDPGAFMDRSLMEGNPHSIIEGMVIAAYAVGA 255

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY+R E+    ++ + A+ +    GLLG N    G+D  I +  G GA++CGE TA
Sbjct: 256 RQGYIYIRNEYPVALKNSEIAIKKAEEKGLLGKNILGTGFDFSIKISRGGGAFVCGESTA 315

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG+ G+PR      +  GL+  PT +NNVE++A +P I+ +GA W+ G G  N++
Sbjct: 316 LMASIEGRTGEPRANYIHTSEKGLWERPTLLNNVETLANIPLIINKGAEWFYGIGTGNSK 375

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G V+    +E  M IT  E+     GG   G     AV  GG S  CLP  +
Sbjct: 376 GTKIFSLVGKVHNTGLIEVPMGITLREI-IYEIGGGIPGGKKFKAVQTGGPSGGCLPEEK 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+ A+IVMD    ++        F + ESCG+C PCREG   
Sbjct: 435 L-DLSVDFDELSRAGSMMGSGAMIVMDEDNCMVDIARYFLSFLEEESCGKCVPCREGLKR 493

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M ++++R+++G  Q  +I+LL ++S+++    +C LG +A  P+   I++F+      I 
Sbjct: 494 MRQILDRIIEGKGQDEDIELLIDLSESLTMGALCGLGGSAGNPVLSTIRHFKDEYVAHIQ 553

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 554 E-KRCP 558


>gi|123476595|ref|XP_001321469.1| hydrogenase chain [Trichomonas vaginalis G3]
 gi|55793663|gb|AAV65812.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Trichomonas
           vaginalis]
 gi|121904296|gb|EAY09246.1| hydrogenase chain, putative [Trichomonas vaginalis G3]
          Length = 429

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 226/413 (54%), Positives = 304/413 (73%), Gaps = 2/413 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
            L  +DRIF NL+G +G  L+ +  RG W+  +++++KG+++I+NEVK S +RGRGGAGF
Sbjct: 13  FLDPKDRIFPNLFGDEGADLASAQKRGDWNQTEELIKKGKEFILNEVKKSEIRGRGGAGF 72

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG KWSF+PK  S  PHYL +NADE EPGTCKDR I+ +EPH L+EG ++AS+ I AH 
Sbjct: 73  STGQKWSFVPK-PSGIPHYLCINADEGEPGTCKDRQILTNEPHKLVEGALLASYTIHAHT 131

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A++YVRGEF  E   LQ A+DE YA+GL+G N+K G+D D+ +H GAGAY+CGEETALL 
Sbjct: 132 AYVYVRGEFRHEIACLQKAIDEAYAAGLIGKNNKFGWDFDMYIHSGAGAYVCGEETALLN 191

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK G+PR KPP+PA  GL+  PT +NNVE+I+ VPTI +RG  W+S  G + ++GTK
Sbjct: 192 SIEGKAGRPRFKPPYPAAKGLFQKPTIINNVETISSVPTICKRGGDWFSSIGIKGSKGTK 251

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +++ISGHVN+PC VEE+M I   +LI K+ GG+RGGWDNLL +IPGG S P L   Q   
Sbjct: 252 IYAISGHVNHPCVVEEAMGIPIKDLINKYAGGVRGGWDNLLCLIPGGLSCPILTKEQCET 311

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+M Y+ L  MGS LGT A+IVMD+ST++ +A  R+S FY HESCGQC PCREGT  +  
Sbjct: 312 AVMGYNELSAMGSALGTGAIIVMDKSTNLYEAFRRVSHFYMHESCGQCGPCREGTAKLSD 371

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +M++  +G A K ++ +L +V+       ICAL  A++ PI+GL+K FRP +E
Sbjct: 372 IMDKFAEGKATKHDLLMLKKVAYQ-TSNCICALAGASSDPIKGLLKQFRPELE 423


>gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit
           [uncultured archaeon GZfos26D6]
          Length = 654

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 152/427 (35%), Positives = 248/427 (58%), Gaps = 9/427 (2%)

Query: 1   MLTDQDRIFT--NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGG 57
               Q R+    NL+ +   +++D ++ G +  + K+L     + ++ EVK++ LRGRGG
Sbjct: 131 FYKYQTRVVFSGNLW-VDPANINDYIALGGYQALAKVLHGMTPEEVLEEVKSANLRGRGG 189

Query: 58  AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
            GF  G KW    +  + +P Y++VN DE +PG   DR IM   PH ++EG +IA++AIG
Sbjct: 190 GGFPAGRKWEST-RNAAGKPKYVIVNCDEGDPGAYMDRSIMEGNPHRVLEGLIIAAYAIG 248

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           +   F+YVR E+    ++L  A+++    G LG +    G++ D+ VH GAGA++ GE +
Sbjct: 249 SQQGFVYVRQEYPLAVKNLAIALEQAKEYGFLGKDILGSGFEFDVKVHRGAGAFVSGESS 308

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ ++EGK G+PR K    ++ G++G P+ +NNVE+ A+VP I+++GA W++  G E +
Sbjct: 309 ALMNAIEGKVGEPRPKYIHTSDSGVWGKPSNLNNVETYAIVPLIIKKGADWFNSIGTEGS 368

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+FS+ G VN    VE  M  T  ++     GG   G     AV  GG S   +P  
Sbjct: 369 KGTKIFSLVGKVNNTGLVEVPMGTTLRDI-IYKIGGGIPGGKRFKAVQTGGPSGGVIPER 427

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +  + +D+D L ++GS +G+  +IVMD  T I+        F  +ESCG+C PCREG  
Sbjct: 428 YL-DSPVDFDELTKLGSMMGSGGMIVMDEDTCIVDIARYFVDFLCNESCGKCVPCREGLK 486

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M  +++ +V G  ++ +I+LL+E++  ++  ++CALG  AA P+   I+ F    E  I
Sbjct: 487 RMREILDDIVAGKGREGDIELLHEIADVMKSASLCALGTTAANPVLSTIRYFGDEYEAHI 546

Query: 417 DQYHRCN 423
            +  RC 
Sbjct: 547 KE-RRCP 552


>gi|311744397|ref|ZP_07718199.1| NADH-quinone oxidoreductase subunit F [Aeromicrobium marinum DSM
           15272]
 gi|311312363|gb|EFQ82278.1| NADH-quinone oxidoreductase subunit F [Aeromicrobium marinum DSM
           15272]
          Length = 436

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 205/412 (49%), Positives = 269/412 (65%), Gaps = 6/412 (1%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + +  +      +L+   ++G +D + + +      II  VK SGLRGRGGAGF TGMKW
Sbjct: 8   VLSRNWADDRAWTLAAYEAQGGYDGLRRAVTMEPGEIIELVKDSGLRGRGGAGFPTGMKW 67

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P   +  P YLVVNADESEPGTCKD  +M   PHTL+EG +IAS AIGA  AFIYVR
Sbjct: 68  SFIP-ADNPNPRYLVVNADESEPGTCKDIPLMMASPHTLVEGVIIASRAIGAETAFIYVR 126

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE +     LQAAV E Y +G LG++ +  G  +D++VH GAGAYICGEETALL+SLEG+
Sbjct: 127 GEVLHVVRRLQAAVREAYEAGYLGADVAGSGTRLDVVVHAGAGAYICGEETALLDSLEGR 186

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +GQPRL+PPFPA  GLY  PT +NNVESIA VP IL  G  W+   G E ++G  L+S+S
Sbjct: 187 RGQPRLRPPFPAVAGLYASPTVINNVESIASVPAILAHGVDWFGSMGTEKSKGFTLYSLS 246

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  + IT  E++E   GG+R G + L    PGGSS P L A  +    +DY
Sbjct: 247 GHVKRPGQYEAPLGITLREILE-LGGGMRDGSE-LKFWTPGGSSTPILTAEHL-DVPLDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G+   GS LGT A+ V D++T +++ + R + FYKHESCG+CTPCREGT W+++ + RL
Sbjct: 304 EGVGAAGSMLGTKALQVFDQTTSVVRCVLRWTEFYKHESCGKCTPCREGTWWLVQTLRRL 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             G  Q  +I+LL ++  NI GR+ CALGD A  PI   I+ FR   +  + 
Sbjct: 364 DSGQGQAGDIELLLDLCDNILGRSFCALGDGATSPITSAIQYFRSEFDAGMH 415


>gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain,
           NADH-quinone oxidoreductase chain F related [uncultured
           archaeon]
          Length = 658

 Score =  468 bits (1205), Expect = e-130,   Method: Composition-based stats.
 Identities = 149/427 (34%), Positives = 242/427 (56%), Gaps = 9/427 (2%)

Query: 1   MLTDQDRIFT--NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGG 57
               Q R+    NL+ +   ++ D ++ G +  + K+L     + ++ E+ ++ LRGRGG
Sbjct: 131 FYKYQTRVVFSGNLW-VDPANIDDYIALGGYQALAKVLHRMTPEEVLEELNSANLRGRGG 189

Query: 58  AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
            GF  G KW    +  + +P Y++VN DE +PG   DR IM   PH ++EG +IA++AIG
Sbjct: 190 GGFPAGRKWEST-RNAAGKPKYVIVNCDEGDPGAYMDRSIMEGNPHRVLEGLIIAAYAIG 248

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           +   F+YVR E+    ++L  A+++    G LG +    G++ D+ VH GAGA++ GE +
Sbjct: 249 SQQGFVYVRQEYPLAVKNLAIALEQAKEYGFLGKDILGSGFEFDVKVHRGAGAFVSGESS 308

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ ++EGK G+PR K    ++ G++  P+ +NNVE+ A VP I+++GA W++  G E +
Sbjct: 309 ALMNAIEGKVGEPRPKYVHTSDSGIWDKPSNLNNVETYATVPLIIKKGADWFNSIGTEGS 368

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+FS+ G VN    VE  M  T  ++I K  G    G      V  GG S   +P  
Sbjct: 369 KGTKIFSLVGKVNNTGLVEVPMGTTLRDIIYKIGG-GIRGGKRFKGVQTGGPSGGVIPER 427

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +  + +D+D L ++GS +G+  +IVMD  T I+        F  +ESCG+C PCREG  
Sbjct: 428 YL-DSPVDFDALTKLGSMMGSGGMIVMDEDTCIVDIARYFVDFLCNESCGKCVPCREGLK 486

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M  +++ +V G  ++ +I+LL E++  ++  ++CALG  AA P+   I+ F    E  I
Sbjct: 487 RMREILDDIVAGKGREGDIELLKEIADVMKSASLCALGTTAANPVLSTIRYFSGEYEAHI 546

Query: 417 DQYHRCN 423
               RC 
Sbjct: 547 RD-GRCP 552


>gi|285017797|ref|YP_003375508.1| NADH-quinone oxidoreductase chain f (nadh dehydrogenaseI chain f)
           (ndh-1, chain f) (nuo6) oxidoreductase [Xanthomonas
           albilineans GPE PC73]
 gi|283473015|emb|CBA15520.1| probable nadh-quinone oxidoreductase chain f (nadh dehydrogenaseI
           chain f) (ndh-1, chain f) (nuo6). oxidoreductase protein
           [Xanthomonas albilineans]
          Length = 447

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 207/420 (49%), Positives = 268/420 (63%), Gaps = 8/420 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KIL++    + +I  VK S LRGRGGAGF T
Sbjct: 19  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILDEKIPPEQVIEMVKQSNLRGRGGAGFPT 78

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 79  GLKWSFMPKNAP--QKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 136

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E  + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 137 NYLRGEFHHEPFEHFEQALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 196

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G  W+ G  +  N G K
Sbjct: 197 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 256

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L   IPGG S+P L A +++G
Sbjct: 257 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LKPGRTLKGAIPGGVSMPVLKAEELKG 314

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +G+GLG+ A++V+D S   +K   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 315 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHR 374

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I   H
Sbjct: 375 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 434


>gi|227112323|ref|ZP_03825979.1| NADH dehydrogenase I subunit F [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 449

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 173/409 (42%), Positives = 244/409 (59%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDEYRSKNGYAAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M  EPH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP I+  GA+WY G   G+  + GTKL   SG V  P
Sbjct: 203 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTESHL-DLPMDFEHIAKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS +GTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L KG  Q
Sbjct: 321 GSRMGTALAMAVDHEINMVSLTRNLEEFFSRESCGWCTPCRDGLPWSVKILRALEKGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I + 
Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQ 429


>gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14]
 gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14]
          Length = 635

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 153/425 (36%), Positives = 237/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +   +L K    +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQLRIALRNCGFIDSENIEEYIAREGYFALADCLLNKQPADVIDVIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  SD   Y+V NADE +PG   DR IM  +PH+++E   I  ++IG+
Sbjct: 209 GFPTGLKWEFASKQVSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+++  A GLLG +     +  DI + +GAGA++CGEETA
Sbjct: 268 SKGLVYIRAEYPLAINRLKKAIEQARAYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFASIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLAAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   ++++D L  + + I+   +C LG  +  P+   + NFR    E + 
Sbjct: 506 LLELLNKITEGRGTEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFRDEYLEHVR 565

Query: 418 QYHRC 422
               C
Sbjct: 566 D-KTC 569


>gi|77918523|ref|YP_356338.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Pelobacter carbinolicus DSM 2380]
 gi|77544606|gb|ABA88168.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 571

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 158/420 (37%), Positives = 234/420 (55%), Gaps = 7/420 (1%)

Query: 1   MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q+ R+  N   +    + D + R  +    K L E   + +INE   SGLRGRGGA
Sbjct: 149 FFALQELRVMRNRGLIDPAKIKDYIGRDGYQGAIKALTEMSSEEVINEAIGSGLRGRGGA 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G+KW F     +D   Y++ NADE +PG   DR++M  +PH++IEG +I + AIGA
Sbjct: 209 GFPIGLKWKFAAAEKNDI-KYILCNADEGDPGAFMDRNVMESDPHSIIEGLIIGAKAIGA 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IY R E+    E+L  A+++  A  LLG N    G+  DI V+ GAGA++CGEETA
Sbjct: 268 HQGYIYCRAEYPLAIETLNKAINQARALDLLGENILGTGFSFDISVYEGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR KPPFPA  GL+  PT +NNVE+++ +P I+ +GA WY   G E + 
Sbjct: 328 LMRSIEGKRGNPRPKPPFPAKAGLFEKPTVLNNVETLSNIPQIIVKGADWYKEIGTEKSP 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FSI+G +     VE  +  T D ++ +   GI     NL AV  GG S  C+P   
Sbjct: 388 GTKIFSITGDIENVGCVEVPIGTTVDTIVNQI--GIVSPDKNLKAVQLGGPSGGCIPKDY 445

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +DY+ L+E G+ +G+  +I M      +        F + E+CG+C P REGT  
Sbjct: 446 MH-VAVDYETLQEYGAIMGSGGLIAMSDDKSGVDIAKFFIDFCQDEACGKCLPGREGTKQ 504

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M++++E++  G     +I+ L  +   I    +CAL   A  P+   ++ F    +E + 
Sbjct: 505 MLQILEKIDSGEGSPDDIETLKVLCGVIRKTALCALCKTAVNPVLSTLRYFPEEYQEAVK 564


>gi|219849354|ref|YP_002463787.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485]
 gi|219543613|gb|ACL25351.1| NADH dehydrogenase (quinone) [Chloroflexus aggregans DSM 9485]
          Length = 535

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 148/419 (35%), Positives = 245/419 (58%), Gaps = 6/419 (1%)

Query: 1   MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T Q   +  +   +  + + D ++ G +  +  ++ E     +IN +  SGLRGRGGA
Sbjct: 112 FFTRQLPIVLRHCGRINPERIEDYIAVGGYRTLYHVIHEMTPAEVINVITRSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K   +   +++ NADE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 172 GYPTGLKWATVAKSPGE-RKFVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIYVRGE+    + LQ A+ +    GLLG+   + G++  I +  GAGA++CGEETA
Sbjct: 231 EQGFIYVRGEYPLAIDRLQKAIVQARRLGLLGAQIFESGFNFRIDIRVGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++GQPR +PP+PA  GL+G PT +NNVE+ A +  I+  G  W++  G E ++
Sbjct: 291 LIASIEGRRGQPRPRPPYPAESGLWGMPTLINNVETFANITAIIENGPEWFANIGTEKSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M IT  E++E+  GG   G   + AV  GG S  C+PA  
Sbjct: 351 GTKIFALTGKIRNTGLIEVPMGITLREIVEEIGGGTPDGSP-VKAVQTGGPSGGCIPAS- 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  ++VMD  T+++        F K ESCG+C PCR GT  
Sbjct: 409 LFDTPVDYESLAAVGSIMGSGGMVVMDEHTNMVDVARFYMEFCKEESCGKCIPCRVGTVQ 468

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +  ++ ++  G A+  ++  + E+ + +   ++C LG +A  P+   +  FR   E+ I
Sbjct: 469 LFNMLTKVRNGQAKGSDLVKIEELCELMRETSLCGLGQSAPNPVLSTLHYFRHEYEQLI 527


>gi|319787438|ref|YP_004146913.1| NADH-quinone oxidoreductase, F subunit [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465950|gb|ADV27682.1| NADH-quinone oxidoreductase, F subunit [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 456

 Score =  468 bits (1204), Expect = e-130,   Method: Composition-based stats.
 Identities = 211/422 (50%), Positives = 275/422 (65%), Gaps = 8/422 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGF 60
            +   ++T L+  +  S  + +  G +  + +IL +      ++  VK SGLRGRGGAGF
Sbjct: 19  KEHQAVYTTLHFDKPWSYENYLKTGGYQALRRILTEKIPPADVVEMVKQSGLRGRGGAGF 78

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK   D   Y++ N+DESEPGT KDRDI+R+ PH +IEG  IA +A G+  
Sbjct: 79  PTGLKWSFMPK--GDMQKYILCNSDESEPGTAKDRDILRYNPHAVIEGMAIACYATGSTV 136

Query: 121 AFIYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            + Y+RGEF  E  E L+ A+ + Y  G LG +    G D+DI    GAGAYICGEETAL
Sbjct: 137 GYNYLRGEFHHEPFEHLEEALADAYKHGWLGKDILGSGVDIDIYNALGAGAYICGEETAL 196

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R GA W+   G+ NN G
Sbjct: 197 MESLEGKKGQPRFKPPFPANFGLYGKPTTINNTETYASVPAIVRNGAEWFMNLGKPNNGG 256

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
            K+FS+SGHV  P   E  +   F EL+   CGGIR   + + AVIPGGSS+P LP   M
Sbjct: 257 CKIFSVSGHVARPGNHEIRLGTPFSELL-DLCGGIR-NGNRIKAVIPGGSSMPVLPGEVM 314

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
            G  MDYD +++ GSGLG+ AVIVMD +T +++A  R++ FY  ESCGQCTPCREGTGWM
Sbjct: 315 MGLTMDYDSIQKAGSGLGSGAVIVMDHTTCMVRACQRIARFYYKESCGQCTPCREGTGWM 374

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            R++ R+    A   ++ +L   +  IEG TICA G+AAAWP+QG +++F    E  I  
Sbjct: 375 YRMLTRIANLEATLDDLHMLRTAAGQIEGHTICAFGEAAAWPVQGFLRHFWHEFEYAIVN 434

Query: 419 YH 420
             
Sbjct: 435 KR 436


>gi|114567343|ref|YP_754497.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338278|gb|ABI69126.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 407

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 167/415 (40%), Positives = 243/415 (58%), Gaps = 11/415 (2%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + ++ RI    YG +   ++      G +  + K     +  +I EVK SGLRGRGGAGF
Sbjct: 1   MAEEMRIVLRNYGKVDPLNIDSYTQVGGYQALAKAKSMSQTDLIEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           +TGMKWSF   V +D   Y++ NADE EPGT KDR IM ++P +++EG  I  +AIGA+ 
Sbjct: 61  NTGMKWSFSYGVKAD-QKYVICNADEGEPGTYKDRIIMENDPQSVLEGMAICGYAIGANK 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY RGE+    E L  A+ +    GLLG       D +I V  GAGAY+CGEE+AL+E
Sbjct: 120 GYIYCRGEYPYVVEILNKAIAQASEKGLLG-------DFNIEVRMGAGAYVCGEESALIE 172

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG +G+PR KPPFP  +GL+G PT VNNVE+ A +P I+ +GA WY G G     GTK
Sbjct: 173 SIEGHRGEPRFKPPFPPVIGLWGKPTIVNNVETFANIPAIVDKGADWYKGIGAAGYPGTK 232

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           + +++G +     +E   + T  ++++   GGI  G     AV  GG+S   +P   +  
Sbjct: 233 VMTLTGDIVNRTVIEVPTNTTIRQVLDDFGGGI-TGGKKFKAVQIGGTSGGFIPES-LLD 290

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D +  +G+ LG+ A  VMD + DI+  I R+S F+ HESCG+CTPCREGT  M  
Sbjct: 291 TPIDFDSMSAIGATLGSGAFFVMDETRDIVDVIDRISKFFAHESCGKCTPCREGTQRMHE 350

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           ++ R+  G A   ++D +  +   +    +C LG AA  P+   +K+FR     +
Sbjct: 351 MLHRVKNGGAVAGDLDYMERLGSVMSKACLCGLGQAAPAPVLTTLKHFRNDYTAK 405


>gi|225175972|ref|ZP_03729964.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168560|gb|EEG77362.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 618

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 159/422 (37%), Positives = 238/422 (56%), Gaps = 7/422 (1%)

Query: 5   QDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q R+   N   +   S++D +++  +  + K LE     II+EVK SGLRGRGG GF  G
Sbjct: 126 QVRVVMRNCGHIDPNSITDYLAQDGYMGLAKALEMTPQEIIDEVKESGLRGRGGGGFPAG 185

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KW    +V +D   Y++ NADE +PG   DR ++  +PH++IEG  IA +AIGA    +
Sbjct: 186 RKWESCLRVDAD-QKYVICNADEGDPGAFMDRSVLEGDPHSVIEGMAIAGYAIGATKGIL 244

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+      L+ A+++     LLG N    G+D ++ +  GAGA++CGE TAL+ S+
Sbjct: 245 YVRAEYPLAIRQLKIAIEQAKERNLLGKNILGSGFDFELDIFQGAGAFVCGESTALVLSI 304

Query: 183 EGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           EG++G P+  P P  +  GL+G PT +NNV++ A V  I+ RG  W+   G EN  GT +
Sbjct: 305 EGRRGMPKPLPRPRTSEEGLWGKPTLLNNVKTFACVAQIIHRGTDWFKSIGTENCPGTAV 364

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G +N    +E  M I  +++I    GG+ GG     AV  GG S  CLP   M   
Sbjct: 365 FALTGKINKSGLIEVPMGIQLEKIINDIGGGVAGG-RAFKAVQTGGPSGGCLPPE-MLNL 422

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+D L   GS +G+  ++VMD +T ++        F   ESCGQCTPCR GT  M+ +
Sbjct: 423 PVDFDSLTAAGSMMGSGGMVVMDDTTCMVDVARYFLEFSLEESCGQCTPCRAGTEQMLTI 482

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +  + +G  ++ +IDLL E+ + I   +IC LG +A  P+   I+ FR   E  I +   
Sbjct: 483 LNDISQGKGREGDIDLLVEMGEAIIDGSICGLGQSAPNPVLSTIRYFREEYEAHI-RNKE 541

Query: 422 CN 423
           C 
Sbjct: 542 CP 543


>gi|51894343|ref|YP_077034.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51858032|dbj|BAD42190.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 618

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 159/426 (37%), Positives = 234/426 (54%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R   ++   +  + + ++++   +  + K L E     +I EVK SGLRGRGG 
Sbjct: 131 FYKGQHRTALSHCGLINPECIEEAIAADRYFALAKALLEMTPAQVIEEVKRSGLRGRGGG 190

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW     V  D   Y++ NADE +PG   DR I+  +PH ++E   IA +AIGA
Sbjct: 191 GFPTGRKWELAAAVEGD-VKYVLCNADEGDPGAFMDRSIIEGDPHAILEAMAIAGYAIGA 249

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +    GLLG N    G+  DI +  GAGA++CGEETA
Sbjct: 250 QHGYIYVRAEYPVAVHRLEIAIRQARELGLLGENILGTGFSFDIDIRLGAGAFVCGEETA 309

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+G PT  NNVE+ A VP I+  GA  +   G E + 
Sbjct: 310 LIASIEGQRGLPRPRPPFPAQKGLWGKPTLNNNVETYANVPYIILHGAEAFRSVGTEKSP 369

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G+V     VE  +  T  E++    GGI  G     A   GG S  C+PA  
Sbjct: 370 GTKVFAVAGNVMNTGLVEVPIGTTLREIVYGMAGGIPKGRP-FKAAQTGGPSGGCIPA-H 427

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MDY+ L E+GS +G+  +IVMD  + ++        F + ESCG+C PCR GT  
Sbjct: 428 LLDIPMDYEPLNEVGSMMGSGGLIVMDDQSCMVDVARFYLQFTQDESCGKCPPCRIGTKR 487

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +++R+V+G     ++D L  ++  I+   +C LG  A  P+   ++ FR   E  + 
Sbjct: 488 MLEILDRIVEGEGTMEDLDELERLANGIKATALCGLGQTAPNPVLSTLRYFREEYEAHVR 547

Query: 418 QYHRCN 423
             H C 
Sbjct: 548 DKH-CP 552


>gi|296268278|ref|YP_003650910.1| NADH-quinone oxidoreductase subunit F [Thermobispora bispora DSM
           43833]
 gi|296091065|gb|ADG87017.1| NADH-quinone oxidoreductase, F subunit [Thermobispora bispora DSM
           43833]
          Length = 428

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 200/419 (47%), Positives = 260/419 (62%), Gaps = 9/419 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N       +L+     G +    K L    D II  VK SGLRGRGGAGF TGMKW 
Sbjct: 8   LTRNWDRPDSFTLAGY---GDYSAARKALSMDPDTIIQMVKDSGLRGRGGAGFPTGMKWG 64

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F+P+    +PHYLVVNADESEPGTCKD  +M   PH LIEG +I S+AI A+ AFIYVRG
Sbjct: 65  FIPQND-GKPHYLVVNADESEPGTCKDIPLMMANPHALIEGAIITSYAIRANHAFIYVRG 123

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E +     LQAAV E Y +G LG N    GYD++++VH GAGAYICGEETALL+SLEG++
Sbjct: 124 EVLHVIRRLQAAVREAYEAGYLGRNIFGSGYDLELVVHCGAGAYICGEETALLDSLEGRR 183

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPRLKPPFPA  GLY CPT +NNVES+A VP+I+  G  W++  G E ++G  +FS+SG
Sbjct: 184 GQPRLKPPFPAVAGLYACPTVINNVESVATVPSIVANGPEWFASMGTEKSKGFGIFSLSG 243

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV  P   E  + IT  EL+E   G        L    PGGSS P      +    +D++
Sbjct: 244 HVARPGQYEAPLGITLRELLEMAGG--IRAGHRLKFWTPGGSSTPIFTEEHL-DVPLDFE 300

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ RL 
Sbjct: 301 SVAANGSMLGTRAIQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLKQVLYRLE 360

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           KG   + ++  + +++ NI GR+ CALGD A   I   +K FR    +   +   C F 
Sbjct: 361 KGQGTEEDLATITDIADNILGRSFCALGDGATSSIHSSVKLFRDEYLKHF-EIGGCPFD 418


>gi|51244535|ref|YP_064419.1| NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea
           psychrophila LSv54]
 gi|50875572|emb|CAG35412.1| probable NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea
           psychrophila LSv54]
          Length = 634

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 230/425 (54%), Gaps = 7/425 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
              Q RI    +G     ++   +    +  ++K L++G D ++ E+K S LRGRGG GF
Sbjct: 140 FARQKRILFASFGFTDPTNIEHYLVHDGYLALEKSLQEGPDMVLTEIKKSALRGRGGGGF 199

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               KW    K     P Y+V NADE +PG   DR ++  +PH ++EG  IA   IG+  
Sbjct: 200 PAARKWEAGRKAT-GHPKYVVCNADEGDPGAFMDRSVLEGDPHAVLEGMAIAGLTIGSEK 258

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+      LQ A+D+     LLG+N     +  DI +  GAGA++CGE TAL 
Sbjct: 259 GYIYVRAEYPLAIARLQNAIDQAKEKNLLGANILGTDFSFDIELFQGAGAFVCGESTALT 318

Query: 180 ESLEGKKGQPRLKP-PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +S++G +G P+  P P   + GL+  PT +NNV++ A VP I+  G   ++  G E ++G
Sbjct: 319 QSIQGYRGMPKASPRPRTTDEGLFDKPTLLNNVKTFAYVPKIINSGGESFAAIGTEKSKG 378

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T +F+++G V +   +E  M  T  E++ +  GG+ G      A+  GG S  CLPA  +
Sbjct: 379 TAVFALTGMVKHCGLIEVPMGTTLREIVFELGGGMVGESP-FKAIQSGGPSGGCLPAHTL 437

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DYD L   G+ +G+  ++VMD ST ++        F + ESCGQCT C+ GT  M
Sbjct: 438 -DTPVDYDSLVSAGAMMGSGGLVVMDESTCMVDIARYFLDFTQKESCGQCTLCKLGTKQM 496

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++E +V G  ++ +I+LL EV + +   ++C LG +AA P+   IK FR   E  I  
Sbjct: 497 LNILEDIVAGRGKEGDIELLLEVGEAVNAGSLCGLGKSAANPVLTTIKYFRDEYEAHIRD 556

Query: 419 YHRCN 423
              C 
Sbjct: 557 -KACP 560


>gi|284106850|ref|ZP_06386293.1| NADH dehydrogenase I subunit F [Candidatus Poribacteria sp. WGA-A3]
 gi|283830029|gb|EFC34305.1| NADH dehydrogenase I subunit F [Candidatus Poribacteria sp. WGA-A3]
          Length = 446

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/403 (46%), Positives = 256/403 (63%), Gaps = 6/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRD-WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           SLSD    G +  +  +L       +I  VK SGLRGRGGAGF TG+KW F+PK     P
Sbjct: 20  SLSDYEGTGGYKALKTVLGNVPPNDLIEMVKKSGLRGRGGAGFPTGVKWGFIPKDHPG-P 78

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL  NADESEPGT KDR +M  +PH ++EG  I+ +AIGA  A+IY+RGEF    + L+
Sbjct: 79  RYLCCNADESEPGTFKDRQLMERDPHQILEGIAISCYAIGAQTAYIYIRGEFRLAAKILE 138

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ E Y +G LGS+    G  V + VH GAGAYICGEETALLESLEGK+G+PR KPPFP
Sbjct: 139 RAITEAYQAGHLGSDIYGSGITVHVYVHVGAGAYICGEETALLESLEGKRGKPRTKPPFP 198

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNRGTKLFSISGHVNYPCTVE 255
           A  GLY  PT VNNVE++A VP I+ RGA W++  G    + GT++F +SGHV  P   E
Sbjct: 199 ATHGLYQKPTVVNNVETLANVPHIVNRGADWFASIGAPPKSTGTRVFCLSGHVKRPGNYE 258

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             ++ TF +LI +  GG+R     L A IPGG+S P L    +    +D++ +   GS  
Sbjct: 259 LPVNATFRDLIYELGGGMRSD-KPLKAFIPGGASAPFLTPDHV-DVQLDFESVALAGSMS 316

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  + VM+  T ++ A  RL  F+ HESCG+CTPCREG+ W++++++R++    +  ++
Sbjct: 317 GSGGITVMEEGTSMVWAALRLMEFFYHESCGKCTPCREGSSWIVQILQRIMNKQGRPDDL 376

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             L E+ +NI GRT+CA GDA   P+Q  +K +R   E  I++
Sbjct: 377 RTLTEICENIGGRTVCAFGDAEIAPVQSTLKYWRNEYEALIEE 419


>gi|253989004|ref|YP_003040360.1| NADH dehydrogenase I subunit F [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780454|emb|CAQ83616.1| nadh dehydrogenase i chain f (nadh-ubiquinone oxidoreductase chain
           6 (nuo6) [Photorhabdus asymbiotica]
          Length = 454

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 242/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+    + +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 28  QPVWLDEYRSKSGYRGAEKALKSMTPNEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 87

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE++    
Sbjct: 88  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAV 147

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 148 HLRKAIEEAKAAGLLGKNIMGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 207

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA  G++G PT VNNVE++  VP+IL  G  WY G   G+  + GTKL   SG V  P
Sbjct: 208 PFPATSGVWGKPTCVNNVETLCNVPSILEYGKEWYIGLSAGKSKDAGTKLMGFSGRVKNP 267

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 268 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTAEHL-DLPMDFENIAKA 325

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  + +G  Q
Sbjct: 326 GSRLGTALAMAVDHEINMVSLTRNLEEFFSRESCGWCTPCRDGLPWSVKILRAIERGEGQ 385

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I
Sbjct: 386 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGI 431


>gi|51246061|ref|YP_065945.1| NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea
           psychrophila LSv54]
 gi|50877098|emb|CAG36938.1| probable NADH dehydrogenase (ubiquinone) I, chain F [Desulfotalea
           psychrophila LSv54]
          Length = 550

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 146/425 (34%), Positives = 232/425 (54%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRIFTN-LYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q ++       +  + + + ++ G + ++   L +     +I+EV ASGLRGRGGA
Sbjct: 116 FFNKQRKVVLEYCGKIDPERIEEYIAVGGYQSLYTALRQMTPKEVIDEVTASGLRGRGGA 175

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KWS + K  +    Y+V NADE +PG   DR ++  +PH +IEG  I ++A+GA
Sbjct: 176 GYPTGLKWSTVSKAIN-AVKYVVCNADEGDPGAFMDRSVLESDPHRVIEGMAIGAYAVGA 234

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IYVR E+    + LQ A+ +    G+LG+      +  DI +  GAGA++CGEETA
Sbjct: 235 RQGIIYVRAEYPLAVKRLQKAITQAKRIGILGNGIFNSDFQFDIQIRLGAGAFVCGEETA 294

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG+ G+P  +PP+PA  GL  CPT +NNVE+ A +  I+R G  W +  G   ++
Sbjct: 295 LIASIEGRVGKPCPRPPYPAESGLKQCPTLINNVETFANIAPIIRNGGQWLASIGTSKSK 354

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     +E +M  T  E++    G          AV  GG S  C+P  Q
Sbjct: 355 GTKVFALAGKVQQKGLIEVAMGTTLGEIVFDIGG-GIADGGTFKAVQTGGPSGGCIPK-Q 412

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+ L ++GS +G+  +IVMD+ + ++        F   ESCG+C PCR GT  
Sbjct: 413 FLDMGVDYESLAKVGSIMGSGGMIVMDQGSCMVDVARFFVEFCMSESCGKCVPCRVGTRQ 472

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  V+ ++  G  +  ++ LL E+   ++   +C LG A+  PI   +  F+      I+
Sbjct: 473 MHDVLGKIASGRGEASDLTLLEELCDLVKNTALCGLGQASVNPILSTLCYFKDEYLAHIE 532

Query: 418 QYHRC 422
           +  RC
Sbjct: 533 E-KRC 536


>gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
 gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
          Length = 635

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 151/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +   +L K    +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQLRIALRNCGFIDSENIEEYIAREGYFALADCLLNKQPADVIDIIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  S    Y+V NADE +PG   DR IM  +PH+++E   I  ++IG+
Sbjct: 209 GFPTGLKWEFASKQVS-NVKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+++    GLLG +     +  DI + +GAGA++CGEETA
Sbjct: 268 SKGLVYIRAEYPLAINRLKKAIEQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFASIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLAAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   ++++D L  + + I+   +C LG  +  P+   + NFR    E + 
Sbjct: 506 LLELLNKITEGRGTEKDLDTLATLGRVIKDTALCGLGQTSPNPVLSTLDNFRDEYLEHVR 565

Query: 418 QYHRC 422
               C
Sbjct: 566 D-KTC 569


>gi|268591139|ref|ZP_06125360.1| NADH oxidoreductase, F subunit [Providencia rettgeri DSM 1131]
 gi|291313365|gb|EFE53818.1| NADH oxidoreductase, F subunit [Providencia rettgeri DSM 1131]
          Length = 452

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 169/409 (41%), Positives = 243/409 (59%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +  +++ L+    D ++N VK +GL+GRGGAGFSTG+KWS MPK  +
Sbjct: 26  QPVWLDEYRSKNGYKGLERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDEN 85

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +  Y + NADE EPGT KDR +M   PH L+EG +  ++A+ A+  +I++RGE++   +
Sbjct: 86  MKLRYFLCNADEMEPGTYKDRLLMEQLPHLLVEGMITGAYALKAYRGYIFLRGEYVEAAQ 145

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 146 NLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 205

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA  G +G PT VNNVE+I  VP IL  G  WY     G+  + GTKL   SG V  P
Sbjct: 206 PFPATSGAWGKPTCVNNVETICNVPAILEHGDQWYIDLSAGKSKDAGTKLMGFSGRVKNP 265

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 266 GLWELPFGTTAREVLEDYAGGMRDGLK-LKAWQPGGAGTDFLTNDHL-DLPMDFENIAKA 323

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W +++++ L KG  Q
Sbjct: 324 GSRLGTALAMAVDHEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQ 383

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q 
Sbjct: 384 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGISQK 432


>gi|183599632|ref|ZP_02961125.1| hypothetical protein PROSTU_03119 [Providencia stuartii ATCC 25827]
 gi|188021884|gb|EDU59924.1| hypothetical protein PROSTU_03119 [Providencia stuartii ATCC 25827]
          Length = 452

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/409 (41%), Positives = 243/409 (59%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +  V++ L+    D +++ VK +GL+GRGGAGFSTG+KWS MPK  +
Sbjct: 26  QPVWLDEYRSKNGYKGVERALKGMAPDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDEN 85

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +  Y + NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE++   +
Sbjct: 86  MKLRYFLCNADEMEPGTYKDRLLMEQLPHLLVEGMIIGAYALKAYRGYIFLRGEYVEAAK 145

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 146 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 205

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA  G +G PT VNNVE+I  VP IL  G  WY     G+  + GTKL   SG V  P
Sbjct: 206 PFPATSGAWGKPTCVNNVETICNVPAILEHGEQWYINLSAGKSKDAGTKLMGFSGRVKNP 265

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 266 GLWELPFGTTAREVLEDYAGGMRDGL-TLKAWQPGGAGTDFLTGDHL-DLPMDFESIGKA 323

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W +++++ L KG  Q
Sbjct: 324 GSRLGTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQ 383

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q 
Sbjct: 384 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGISQK 432


>gi|146299001|ref|YP_001193592.1| NADH-quinone oxidoreductase, F subunit [Flavobacterium johnsoniae
           UW101]
 gi|146153419|gb|ABQ04273.1| NADH dehydrogenase subunit F [Flavobacterium johnsoniae UW101]
          Length = 456

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 192/411 (46%), Positives = 262/411 (63%), Gaps = 16/411 (3%)

Query: 21  SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
                 G + +V+K L+    D +  EVK SGLRGRGGAGF  GMKWSF+ K  S RP +
Sbjct: 19  EVYRQNGGYASVEKALKTLTPDEVTEEVKKSGLRGRGGAGFPAGMKWSFIDK-KSGRPRH 77

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           LV NADESEPGT KDR +M + PH LIEG + +S+A+GA+ ++IY+RGE++   + L+ A
Sbjct: 78  LVCNADESEPGTFKDRFLMEYIPHLLIEGMITSSYALGANLSYIYIRGEYMWVFKILERA 137

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           + E  A+G LG N    GYD+++ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA 
Sbjct: 138 IAEAKAAGWLGKNILGSGYDLELHVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAV 197

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+  PT VNNVE+IA VP I+      Y+  G   + GTKL S SGH+  P   E  +
Sbjct: 198 SGLWANPTVVNNVETIATVPWIVNNSGDDYAKIGIGRSTGTKLISASGHIKNPGVYEIEL 257

Query: 259 SITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR------GAIMDYDGLK- 309
            ++ DE +  +++ GG+      L A +PGGSSVP LPA  +         +M Y+ L  
Sbjct: 258 GLSVDEFMNSDEYLGGMSSSRP-LKAFVPGGSSVPILPAELIFKTANGEDRLMTYESLSD 316

Query: 310 ---EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
                GS LG+   IV + +  +++  W  + FY HESCGQCTPCREGTGW+ +++ R+ 
Sbjct: 317 GGFATGSMLGSGGFIVYNDTACVVRNTWNFARFYHHESCGQCTPCREGTGWLEKILWRIE 376

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            G  ++ +I+LL+ +   IEG TIC LGDAA+WP+   I++FR   E  + 
Sbjct: 377 NGQGREEDIELLWSIQSKIEGNTICPLGDAASWPVAAAIRHFRDEFEYHVR 427


>gi|258593430|emb|CBE69769.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           (NDH-1, chain F) [NC10 bacterium 'Dutch sediment']
          Length = 427

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 203/423 (47%), Positives = 276/423 (65%), Gaps = 8/423 (1%)

Query: 6   DRIFTNLYGLQGK--SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFST 62
           ++I T  + + G   +L +  + G +  + K+L++     +I  VK SGLRGRGGAGF T
Sbjct: 3   EKILTKRFEIPGYRGTLDEYEATGGYQAIAKVLKEHTPTSLIELVKRSGLRGRGGAGFPT 62

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KW F+PK  SD P YLV NADESEPGT KDR+++  +PH L+EG ++  FAIG   A+
Sbjct: 63  GVKWGFVPK-GSDLPKYLVCNADESEPGTFKDRELIMRDPHQLLEGILLGGFAIGCRAAY 121

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+RGE +     L+ AV +  A GL+G +     + +D+ VH GAGAYICGEETALLES
Sbjct: 122 IYIRGELVAGARILEQAVSDAAARGLVGKDILGSRFSLDLHVHRGAGAYICGEETALLES 181

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK+G PRLKPPFPA  GLY  PT VNNVE++  +P I+ RGA W++G G   + GT++
Sbjct: 182 LEGKRGLPRLKPPFPATSGLYRKPTVVNNVETLCNIPHIVMRGAEWFAGIGTPKSTGTRI 241

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F +SGHV  P   E  + +   ELI +H GGIR     L AVIPGGSSVP L    +  A
Sbjct: 242 FGVSGHVRRPGIYECRIDVPMRELIFEHAGGIR-EGRRLKAVIPGGSSVPVLTERHL-DA 299

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MD++ L   GS  G+  VIVMD +T +++    +S FY HESCGQCT CREGT W+ + 
Sbjct: 300 RMDFESLATAGSMAGSGGVIVMDDTTCMVRVGEIVSRFYHHESCGQCTQCREGTAWLHKT 359

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+ +G  ++ ++DLL ++  N++G+TIC L DAAA PI+  +K FR   E+ I + H 
Sbjct: 360 LRRIEEGRGRQADLDLLLDICDNMKGKTICPLSDAAAMPIESYLKYFRDEFEQHIVE-HA 418

Query: 422 CNF 424
           C F
Sbjct: 419 CPF 421


>gi|16761249|ref|NP_456866.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29141055|ref|NP_804397.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052940|ref|ZP_03345818.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417788|ref|ZP_03350900.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427014|ref|ZP_03359764.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213647300|ref|ZP_03377353.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289829696|ref|ZP_06547237.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25285050|pir||AB0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503548|emb|CAD07556.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136681|gb|AAO68246.1| NADH dehydrogenase I chain F [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 445

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/406 (41%), Positives = 236/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+++VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E        E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTIAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|37526973|ref|NP_930317.1| NADH dehydrogenase I subunit F [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786406|emb|CAE15459.1| NADH dehydrogenase I chain F (NADH-ubiquinone oxidoreductase chain
           6) (NUO6) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 454

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 240/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+    D +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 28  QPVWLDEYRSKSGYRGAEKALKSMSPDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 87

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE++    
Sbjct: 88  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAV 147

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 148 HLRKAIEEAKAAGLLGKNIMGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 207

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA  G +G PT VNNVE++  VP+IL  G  WY G   G+  + GTKL   SG V  P
Sbjct: 208 PFPATSGAWGKPTCVNNVETLCNVPSILEYGKEWYIGLSAGKSKDAGTKLMGFSGRVKNP 267

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 268 GLWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTAEHL-DLPMDFENIAKA 325

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  + +G  Q
Sbjct: 326 GSRLGTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIERGEGQ 385

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I
Sbjct: 386 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGI 431


>gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 627

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 241/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R+     G +  + + D ++   +  + K+L       +INEV  SGLRGRGG 
Sbjct: 141 FYKRQVRVTLRYCGRINPEDIYDYIAHRGYRAIAKVLNNMTPQDVINEVTESGLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWSF          Y++ N DE +PG   DR +M   PH++IEG +IA +AIGA
Sbjct: 201 GFPTGRKWSFAA-ASPGTKKYIICNGDEGDPGAFMDRSVMEGNPHSVIEGMMIAGYAIGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY R E+    + ++ A+ +  A GLLG+N     ++  I +  GAGA++CGEETA
Sbjct: 260 DEGYIYARAEYPLAIQRMRKAITDAEAIGLLGNNILGSNFNFKIHIKEGAGAFVCGEETA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  GL+GCPT +NNVE++A +  I+  GA+ +  +G  ++ 
Sbjct: 320 LIASIEGQRGMPRPRPPFPAVKGLWGCPTVINNVETLANLRYIINNGAALFKSYGTNHSA 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G +     VE  M IT  E++    GG+R G     AV  GG S  CL   +
Sbjct: 380 GTKTFALAGQIQNTGLVEVPMGITLREIVFDIGGGLREG-KKYKAVQIGGPSGGCLTEEK 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L + G+ +G+  ++VM   T +++       F ++ESCG+C PCREGT  
Sbjct: 439 L-DLPLDYDELIKAGAMIGSGGLVVMGDDTCMVETAKFFMSFVQNESCGKCVPCREGTKQ 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ ++ +G   + ++ +L E++ +++  ++C LG  A  P+   ++ FR      + 
Sbjct: 498 MLALLTKITEGKGTEEDLVVLEELAHSVKDGSLCGLGKTAPNPVLTTLRYFRDEYIAHVR 557

Query: 418 QYHRCN 423
              +C 
Sbjct: 558 D-KKCP 562


>gi|308374786|ref|ZP_07667861.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu006]
 gi|308340530|gb|EFP29381.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           SUMu006]
          Length = 422

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 203/413 (49%), Positives = 268/413 (64%), Gaps = 11/413 (2%)

Query: 20  LSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD- 75
           ++          +  + K L    D +I+ VK SGLRGRGGAGF+TG KWSF+P+  +  
Sbjct: 1   MATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQGDTGA 60

Query: 76  --RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
             +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI AH AF+YVRGE +   
Sbjct: 61  AAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVL 120

Query: 134 ESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             L  AV E YA+G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+
Sbjct: 121 RRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 180

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P 
Sbjct: 181 PPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPG 240

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+   G
Sbjct: 241 QYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAAG 297

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G    
Sbjct: 298 SMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSH 357

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            +ID L ++S +I G++ CALGD AA P+   IK+FR      + +   C F 
Sbjct: 358 EDIDKLLDISDSILGKSFCALGDGAASPVMSSIKHFRDEYLGHV-EGGGCPFD 409


>gi|110806247|ref|YP_689767.1| NADH dehydrogenase I subunit F [Shigella flexneri 5 str. 8401]
 gi|110615795|gb|ABF04462.1| NADH dehydrogenase I chain F [Shigella flexneri 5 str. 8401]
          Length = 445

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/406 (41%), Positives = 237/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICG+ETAL+  LEG +  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGDETALINFLEGHRAYPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|119510367|ref|ZP_01629502.1| hydrogenase subunit [Nodularia spumigena CCY9414]
 gi|119465004|gb|EAW45906.1| hydrogenase subunit [Nodularia spumigena CCY9414]
          Length = 533

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 145/411 (35%), Positives = 239/411 (58%), Gaps = 5/411 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + +   ++   +  +  +L E     +++ +  SGLRGRGGAG+ TG+KW
Sbjct: 126 VLENSGKVDPERIQSYIAAQGYQVLYHVLREMTPSEVVDAITRSGLRGRGGAGYPTGLKW 185

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           + + K   D   +++ NADE +PG   DR ++  +PH ++EG  IA++A+GA+  +IY+R
Sbjct: 186 ATVAKAEGD-RKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGANQGYIYIR 244

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+      LQ A+ +  + G+LGS      +D  I +  GAGAY+CGEETAL+ S+EGK
Sbjct: 245 AEYPIAINRLQTAIRQAQSFGILGSQIFDSRFDFKIDIRIGAGAYVCGEETALMASIEGK 304

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G P  +PP+PA  GL+G PT +NNVE+ A V  I+R GA W++  G E ++GTK+F+++
Sbjct: 305 RGTPHPRPPYPAESGLWGYPTLINNVETYANVAPIIRNGAEWFASIGTEKSKGTKVFALA 364

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G++     +E  M  +  +++E   G        + AV  GG S  C+PA     + +DY
Sbjct: 365 GNITNTGLIEVPMGTSLQQIVEVMGG-GVPNGGVVKAVQTGGPSGGCIPASA-FDSPVDY 422

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L E+GS +G+  +IVMD ST+++        F   ESCG+C PCR GT  + +++ R+
Sbjct: 423 ESLTELGSIMGSGGMIVMDESTNMVDVARYFMEFCMDESCGKCIPCRVGTVQLYKLLTRI 482

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             G A   +++LL E+   ++  ++C LG +A  P+   ++ FR    E I
Sbjct: 483 SAGEASLADLELLEELCDMVKHTSLCGLGQSAPNPVFSTLRYFRDEYLELI 533


>gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 623

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 157/426 (36%), Positives = 241/426 (56%), Gaps = 8/426 (1%)

Query: 1   MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
              +Q   I   +   + + + D M RG + ++ K+L    R+ +I  +KASGLRGRGG 
Sbjct: 138 FFKNQKFYIMEGIGTSECEKIEDYMGRGGYKSLLKVLSSMKREEVIETIKASGLRGRGGG 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   D   ++V NADE +PG   +R ++  +PH+++EG +IA++ +GA
Sbjct: 198 GFPTGLKWEFAYKAKGD-KKFVVCNADEGDPGAFMNRTLLERDPHSILEGMIIAAYTVGA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+    E    A+++  A GLLG N    G+  D+ V  GAGA++CGEETA
Sbjct: 257 QKGYAYIRAEYPIAVEMFNKAINDAKALGLLGENILGTGFSFDLEVKEGAGAFVCGEETA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EGK+G PR +PPFPA  GL+G PT +NNVE+ A VP I+R G   Y   G E + 
Sbjct: 317 LLASIEGKRGVPRPRPPFPAQKGLWGYPTLINNVETYANVPKIIRDGVKKYRENGVEKSP 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E     T   ++E  CGG       + A+  GG S  CLP   
Sbjct: 377 GTKMFSVTGPLKLTGIIEIPFGTTIRYVLENICGGT-TDGKKIKAIQIGGPSGACLPEKY 435

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD LK + + +G+  ++ +   + +++       F K ESCG+C PCREGT  
Sbjct: 436 -FDLPLDYDTLKSIDAMVGSGGIVAITEDSCMVEVARFFLDFTKRESCGKCVPCREGTMQ 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
              ++E+  +G A + +++ L  ++K I+  ++C LG  A  PI   +K+FR    E I+
Sbjct: 495 AYNILEKFTQGKATEEDLENLEYLAKIIKTASLCGLGKTAPNPILSTLKHFREEYIEHIN 554

Query: 418 QYHRCN 423
              +C 
Sbjct: 555 --GKCP 558


>gi|237732315|ref|ZP_04562796.1| NADH dehydrogenase I subunit F [Citrobacter sp. 30_2]
 gi|283832286|ref|ZP_06352027.1| NADH oxidoreductase, F subunit [Citrobacter youngae ATCC 29220]
 gi|226907854|gb|EEH93772.1| NADH dehydrogenase I subunit F [Citrobacter sp. 30_2]
 gi|291071930|gb|EFE10039.1| NADH oxidoreductase, F subunit [Citrobacter youngae ATCC 29220]
          Length = 445

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 237/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G +G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPASSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|145589229|ref|YP_001155826.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047635|gb|ABP34262.1| NADH dehydrogenase subunit F [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 432

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 208/418 (49%), Positives = 267/418 (63%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D  SRG +  +  ++      D II E+KAS LRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWRLKDYESRGGYQQLRHLINDKVAPDAIIAELKASSLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDIMR+ PH LIEG +I ++ +G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDIMRYNPHALIEGMIIGAYTMGITTGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        + A++E  A+G LG       +   +    G GAYICGEETALLESLEG
Sbjct: 131 HGEIWEVYSRFEEALEEARAAGYLGDKILGSEFSFQLHASPGWGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP IL  G   Y   G+ NN GTK+FSI
Sbjct: 191 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFILAIGGQAYLELGKPNNGGTKIFSI 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V +P   E  +   F EL+ K  GG+R G   L AVIPGGSS P +P  QM    MD
Sbjct: 251 SGDVVHPGNYEIPLGTPFAELL-KLAGGMRDGIP-LKAVIPGGSSSPVVPGAQMMELTMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVM+ +  +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMNETRCMVRALERLSYFYHEESCGQCTPCREGTGWLWRIVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +  G  +  ++DLL +V+ NI+GRTICALGDAAA P++G++K++       + ++ RC
Sbjct: 369 IEHGQGRPEDLDLLNDVAANIQGRTICALGDAAAMPVRGMLKHYMDEFVYHV-EHKRC 425


>gi|326799005|ref|YP_004316824.1| NADH-quinone oxidoreductase, F subunit [Sphingobacterium sp. 21]
 gi|326549769|gb|ADZ78154.1| NADH-quinone oxidoreductase, F subunit [Sphingobacterium sp. 21]
          Length = 450

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 206/414 (49%), Positives = 264/414 (63%), Gaps = 16/414 (3%)

Query: 19  SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +      +G +  V+K L+    + ++ EVK SGLRGRGGAGF TGMKWSF+ K     P
Sbjct: 17  TFEVYRQKGGYRAVEKALKTLSPEEVVEEVKKSGLRGRGGAGFPTGMKWSFLAK-PEGVP 75

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV NADESEPGT KDR +M H PH LIEG ++AS+A+GA+ ++IYVRGE + +   L+
Sbjct: 76  RYLVCNADESEPGTFKDRYLMTHIPHALIEGMIVASYALGANTSYIYVRGEMMPQIRILE 135

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E  A+G LG+N    GY++++ V  G GAYICGEETALLESLEGK+G PR+KPPFP
Sbjct: 136 RAIEEAKAAGFLGTNILGTGYNLELYVQPGGGAYICGEETALLESLEGKRGNPRIKPPFP 195

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GLY CPT VNNVESIA    IL  G   Y+  G E + GTKL S SG++N P   E 
Sbjct: 196 AVAGLYNCPTVVNNVESIAATVPILNMGGEEYAKIGIERSTGTKLISASGNINKPGVYEI 255

Query: 257 SMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDGL 308
            + +  +E I   ++CGGI      L AV+ GGSSVP LPA  +         +M Y+ L
Sbjct: 256 ELGLPVEEFIYSDEYCGGI-TNGKRLKAVVAGGSSVPILPANLILKTAKGENRLMTYESL 314

Query: 309 K----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
                  G+ LG+   IV D    I++  W  + FY HESCGQC+PCREGTGWM +V+ R
Sbjct: 315 ADGGFATGTMLGSGGFIVFDEDQCIVRNTWNFARFYHHESCGQCSPCREGTGWMEKVLHR 374

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L  G  +  +IDLL +VSK IEG TIC LGDAAAWP+   I++FR   E  +  
Sbjct: 375 LEYGHGKMSDIDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFEWHVIH 428


>gi|302035987|ref|YP_003796309.1| NADH-quinone oxidoreductase subunit F [Candidatus Nitrospira
           defluvii]
 gi|300604051|emb|CBK40383.1| NADH-quinone oxidoreductase, subunit F [Candidatus Nitrospira
           defluvii]
          Length = 435

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 191/409 (46%), Positives = 258/409 (63%), Gaps = 6/409 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           SL++    G +  + K+L K     +   V  SGLRGRGGAGF TG+KW F+PK     P
Sbjct: 20  SLAEYERAGGYQAIRKVLGKVSPADVTAVVMKSGLRGRGGAGFPTGVKWGFLPKDYQG-P 78

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL  NADESEPGT KDR ++  +PH L+EG ++A +AIGA  ++IY+RGEF+   + L+
Sbjct: 79  RYLCCNADESEPGTFKDRQLIERDPHQLLEGMLLACYAIGAASSYIYIRGEFVLGAKILE 138

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E  A+G +G N       +DI VH GAGAYICGEETALLESLEGK+G PR+KPPFP
Sbjct: 139 QAINEARAAGYVGKNIFGSNTTIDIWVHRGAGAYICGEETALLESLEGKRGLPRVKPPFP 198

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNRGTKLFSISGHVNYPCTVE 255
           A  GLY  PT VNNVE++A +P IL RGA W++  G    + GT++F +SGHV  P   E
Sbjct: 199 ATHGLYNKPTVVNNVETLANLPHILNRGAEWFASIGSPPKSTGTRVFCVSGHVARPGNYE 258

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M ITF ELI +  GG+R     L A IPGG+S P L    +    +D++ +   GS L
Sbjct: 259 VPMGITFRELIYEQAGGMRSD-KKLKAFIPGGASAPFLTPDHL-DVKLDFESVALAGSML 316

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  V VM+  TD++ A  RL  F+ HESCG+C+PCREG+ W++++M R+V    Q  ++
Sbjct: 317 GSGGVTVMEEGTDMVWAALRLMEFFYHESCGKCSPCREGSSWLVQIMRRIVNKRGQLADL 376

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           + L ++ KNI GRT+CA GDA   PI   +K++R      I      N 
Sbjct: 377 ETLTDLCKNIAGRTVCAFGDAEVSPILSTLKHWRHEYVAMIHAAEAANL 425


>gi|261340672|ref|ZP_05968530.1| NADH oxidoreductase, F subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288317086|gb|EFC56024.1| NADH oxidoreductase, F subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 445

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/406 (42%), Positives = 238/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  +    K L     D I+N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLEEYQAKNGYAGARKALGGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I   E
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAE 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G     + GTKL   SG V  P  
Sbjct: 202 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGISSSKDAGTKLMGFSGRVKNPGV 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|77164632|ref|YP_343157.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus oceani ATCC
           19707]
 gi|254434237|ref|ZP_05047745.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani
           AFC27]
 gi|76882946|gb|ABA57627.1| NADH dehydrogenase subunit F [Nitrosococcus oceani ATCC 19707]
 gi|207090570|gb|EDZ67841.1| NADH oxidoreductase (quinone), F subunit [Nitrosococcus oceani
           AFC27]
          Length = 429

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 165/416 (39%), Positives = 244/416 (58%), Gaps = 7/416 (1%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK- 71
             +   L      G +  + + ++      ++ EVK S LRGRGGAGF TG+KWSF+P+ 
Sbjct: 17  HREPPDLKQYAQAGGYQGLQRAIKTLTPQEVLQEVKESNLRGRGGAGFPTGLKWSFVPRG 76

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
             + RP YL+ NADE EPGT KDR +M  +PH L+EG ++AS+AI A  A+I++R E+  
Sbjct: 77  DDAPRPKYLIANADEMEPGTFKDRLLMEGDPHQLLEGMILASYAIQAEVAYIFLRAEYWL 136

Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
             + L+ A+ E Y    LG N     + +++ +H  AG YICGEETALL +LEGK+  PR
Sbjct: 137 AAQRLKKAIAEAYQVNYLGKNLLGSTFSLELHLHTSAGRYICGEETALLNALEGKRAIPR 196

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
            KPP+P   GL+G PT VNNVE++  VP I+ RGA+WY    R  + GTK++  SG V +
Sbjct: 197 AKPPYPQVSGLWGQPTVVNNVETLCNVPHIIARGAAWYQNLSRSEDGGTKIYGASGRVKH 256

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E  M     E++E+H GG++ G+  L   +PGG+S   L    +    MDYD ++ 
Sbjct: 257 PGAWELPMGTPIREILEEHAGGMKDGF-QLRGFLPGGASTDFLTEEHLE-VPMDYDSVQA 314

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT ++I++D  T  +  +  L  F+  ESCG CTPCR+G  W+ +++  + +G  
Sbjct: 315 AGSRLGTGSLIILDDRTCPVDMVRNLEHFFAQESCGWCTPCRDGLPWVEKILLGIEQGQG 374

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           Q  +++ L   ++ +  G T CA    A  P+Q  +K F+   E+ I Q  RC F+
Sbjct: 375 QPEDLEYLMMHTRLLGPGHTFCAHAPGAMEPLQSALKYFKTDFEQHIHQ-QRCPFK 429


>gi|161524209|ref|YP_001579221.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           ATCC 17616]
 gi|189351034|ref|YP_001946662.1| NADH dehydrogenase I subunit F [Burkholderia multivorans ATCC
           17616]
 gi|221199661|ref|ZP_03572705.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD2M]
 gi|221205439|ref|ZP_03578454.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD2]
 gi|221211740|ref|ZP_03584719.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD1]
 gi|160341638|gb|ABX14724.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           ATCC 17616]
 gi|189335056|dbj|BAG44126.1| NADH dehydrogenase I chain F [Burkholderia multivorans ATCC 17616]
 gi|221169101|gb|EEE01569.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD1]
 gi|221174277|gb|EEE06709.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD2]
 gi|221180946|gb|EEE13349.1| NADH-quinone oxidoreductase, F subunit [Burkholderia multivorans
           CGD2M]
          Length = 436

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 206/418 (49%), Positives = 270/418 (64%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA++E  A+G LG N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALEEARAAGFLGDNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y   G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLAVGPQNYLELGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVVPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + ++GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKVGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       + ++ RC
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV-EHKRC 425


>gi|300723694|ref|YP_003713001.1| NADH dehydrogenase I subunit F [Xenorhabdus nematophila ATCC 19061]
 gi|297630218|emb|CBJ90869.1| NADH dehydrogenase I chain F [Xenorhabdus nematophila ATCC 19061]
          Length = 454

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 167/405 (41%), Positives = 236/405 (58%), Gaps = 7/405 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              L +  S+  +   +K L+    D ++  VK +GL+GRGGAGFSTG+KWS MPK  S 
Sbjct: 29  PVWLDEYRSQNGYKGAEKALKGMAPDEVVALVKDAGLKGRGGAGFSTGLKWSLMPKDESM 88

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE++     
Sbjct: 89  NIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAVH 148

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ A++E  ++GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPP
Sbjct: 149 LRKAIEEAKSAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPP 208

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPC 252
           FPA  G +G PT VNNVE++  VP IL  G  WY G   G+  + GTKL   SG V  P 
Sbjct: 209 FPATSGAWGKPTCVNNVETLCNVPAILEHGKEWYIGLSEGKSKDAGTKLMGFSGRVKNPG 268

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E     T  E++E + GG+R G     A  PGG+    L    +    MD++ + + G
Sbjct: 269 LWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEDHL-DLPMDFESIAKAG 326

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  +  G  Q 
Sbjct: 327 SRLGTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIESGKGQP 386

Query: 373 REIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 387 GDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 431


>gi|220909416|ref|YP_002484727.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425]
 gi|219866027|gb|ACL46366.1| NADH dehydrogenase (quinone) [Cyanothece sp. PCC 7425]
          Length = 543

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 150/417 (35%), Positives = 244/417 (58%), Gaps = 7/417 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +I     G +  + + + ++ G + ++ K+L E     ++ E+  SGLRGRGG 
Sbjct: 112 FFAHQLKIVREYSGKIDPERIEEYIAVGGYQSLHKVLYEMTPAEVVTEITRSGLRGRGGG 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+  D   Y++ N DE +PG   DR ++  +PH ++EG  IA +A+GA
Sbjct: 172 GYPTGLKWATVAKMPGD-QKYVICNGDEGDPGAFMDRSVLESDPHLVLEGMAIAGYAMGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  FIYVR E+    + LQ A+ +    GLLGS      +D  I +  GAGA++CGEETA
Sbjct: 231 NHGFIYVRAEYPLAIQRLQKAIQQAKKYGLLGSQIFDSHFDFKIEIRIGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G PR +PP+PA  GL+ CPT +NNVE+ A +  I+R GA WY+  G E ++
Sbjct: 291 LIASIEGGRGNPRPRPPYPAQFGLWHCPTLINNVETFANIAPIVREGADWYASIGTEKSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M I+  +++E+  GG+  G   + AV  GG S  C+PA  
Sbjct: 351 GTKIFALTGKIRNNGLIEVPMGISLRQIVEEMGGGVPEG--QVKAVQTGGPSGGCIPAD- 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  ++VMD ST++++       F + ESCG+C PCR GT  
Sbjct: 408 LLDTPVDYDSLTALGSMMGSGGMVVMDESTNMVEVAHFYMEFCRGESCGKCIPCRAGTVQ 467

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +  ++ +L+   A   ++D L E+   ++  ++C LG +A  P+   ++ F    E 
Sbjct: 468 LYGLLTKLLHKQATPADLDKLKELCAMVKETSLCGLGMSAPNPVLSTLRYFGEEYEA 524


>gi|222053345|ref|YP_002535707.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562634|gb|ACM18606.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 637

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 243/426 (57%), Gaps = 9/426 (2%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R+   N   L   S+ D ++ G +  ++K + +   + ++  VK SGLRGRGG 
Sbjct: 130 FYKNQLRLLIGNNIKLDPTSIDDYIAIGGYTALEKAVCQMKPEQVVGLVKESGLRGRGGG 189

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF +G KW F  +   D   Y+VVNADE +PG   DR ++   PH ++EG +I ++AIGA
Sbjct: 190 GFPSGNKWEFT-RNAPDPVKYVVVNADEGDPGAFMDRALLEGSPHAVLEGLIIGAYAIGA 248

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  F+YVR E+     ++  A+ +    G LG N    G+D  + V  GAGA++CGEETA
Sbjct: 249 HEGFLYVRQEYPLAVHNITLAIQKAEEYGFLGKNILGSGFDFTVEVAQGAGAFVCGEETA 308

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEGK G+P+ +PPFPA  GL+  PT +NNVE+ A +P I+ +G + ++  G   ++
Sbjct: 309 LIRSLEGKTGEPKPRPPFPAVRGLWNKPTNINNVETWANIPLIINKGPAAFASVGTGGSK 368

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G V     VE  M IT  +++ K  GGI G      AV  GG +  C+P   
Sbjct: 369 GTKIFSLVGKVKNTGLVEVPMGITLRDIVYKIGGGIPGE-KKFKAVQTGGPAGGCMPES- 426

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L + GS +G+  +IV+D  T ++        F   ESCG+C PCREG   
Sbjct: 427 LLDMEVDFDQLTKAGSMMGSGGMIVLDEETCMVDFARFFLSFLAEESCGKCVPCREGIQQ 486

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++  L  G  +K +++LL ++++ +   ++CALG  A  P+   +K+FR   +  ++
Sbjct: 487 MLAILNDLTHGKGKKGDLELLEQLTE-VSSASLCALGKGAPNPVLSTLKHFRDEYQAHME 545

Query: 418 QYHRCN 423
              +C 
Sbjct: 546 --GKCP 549


>gi|218295765|ref|ZP_03496561.1| NADH-quinone oxidoreductase, F subunit [Thermus aquaticus Y51MC23]
 gi|218243924|gb|EED10451.1| NADH-quinone oxidoreductase, F subunit [Thermus aquaticus Y51MC23]
          Length = 437

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/426 (45%), Positives = 266/426 (62%), Gaps = 13/426 (3%)

Query: 6   DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
            R    LY   G     +L   +++G ++   K+L EK  + +I EVK SGLRGRGGAGF
Sbjct: 11  PRFERTLYAHVGKEGSWTLDFYLAQGGYETAKKVLKEKTPEEVIEEVKRSGLRGRGGAGF 70

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    + HYL+ NADESEPG+ KDR I+   PH LIEG ++A +AI A  
Sbjct: 71  PTGVKWSFMPKD--GQQHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATV 128

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVRGE+ R  + L+AA+ E  A G LG N    G+  D+ VH GAGAYICGEETAL+
Sbjct: 129 GYIYVRGEYRRAADRLEAAIAEARARGYLGQNLFGTGFSFDLHVHRGAGAYICGEETALM 188

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG +  PRLKPPFPA  GL+G PTT+NNVE++A V  IL RGA W++  G E ++G 
Sbjct: 189 NSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLAAVVPILERGADWFAQMGTEGSKGM 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQM 298
           KL+ +SG V  P   E  M  TF ELI +  GG     + + A+IPGGSS P LP + ++
Sbjct: 249 KLYQVSGPVKRPGVYELPMGTTFRELIYEWAGGP---LEPIQALIPGGSSTPPLPFSEEV 305

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-W 357
               M Y+ L+  GS LGT  VI++     ++ A+W L+ FY HESCG+CTPCREG   +
Sbjct: 306 LDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGF 365

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ +  ++  G  ++++++ L  +   IEGR+ C L DAA WP++G +K+F+        
Sbjct: 366 MVNLFAKIGTGEGEEKDVETLEALLPLIEGRSFCPLADAAVWPVKGSLKHFKDQYLALAR 425

Query: 418 QYHRCN 423
           +     
Sbjct: 426 EKKPVP 431


>gi|217970161|ref|YP_002355395.1| NADH-quinone oxidoreductase, F subunit [Thauera sp. MZ1T]
 gi|217507488|gb|ACK54499.1| NADH-quinone oxidoreductase, F subunit [Thauera sp. MZ1T]
          Length = 439

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 209/424 (49%), Positives = 273/424 (64%), Gaps = 7/424 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAG 59
           ++ Q  I     G +   L D ++RG +  + KIL +   +D II E+K S LRGRGGAG
Sbjct: 1   MSTQGMILAGCDGDRTWRLQDYVARGGYSALRKILAEKIPQDAIIAELKTSVLRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWSFMP+       YL  N+DE EPGT KDRDI+R+ PH++IEG  IA++A+GA 
Sbjct: 61  FPTGLKWSFMPRSFPG-DKYLACNSDEGEPGTFKDRDILRYNPHSVIEGMAIAAYAMGAA 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             + Y+ GE        + A+ E + +G +G N     +  ++  HHG GAYICGEETAL
Sbjct: 120 RGYNYIHGEIFETYSRFEEALAEAHEAGFIGRNILGSDFSFELFAHHGYGAYICGEETAL 179

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LES+EGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+  G   +   G+ NN G
Sbjct: 180 LESIEGKKGQPRFKPPFPASYGLYGKPTTINNTETFASVPFIMNMGGEAFLNLGKPNNGG 239

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
            KLFS+SGHVN P   E  +   F EL+E   G    G   + AVIPGGSS P +P G M
Sbjct: 240 MKLFSVSGHVNRPGNYEIPLGTPFAELLEMAGGM--RGGRKIKAVIPGGSSAPVVPGGVM 297

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDYD + + GS LG+ AVIVMD +T +++A+ RLS FY  ESCGQCTPCREGTGW+
Sbjct: 298 MDCTMDYDSISKAGSMLGSGAVIVMDETTCMVRALERLSYFYFEESCGQCTPCREGTGWL 357

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RV+ R+  G+ +  ++DLL  V+ NI GRTICALGDAA+ P+Q  +K+F    E  I+ 
Sbjct: 358 YRVVHRIEHGLGRPDDLDLLNSVTTNIMGRTICALGDAASMPVQSFVKHFGSEFEYHIEN 417

Query: 419 YHRC 422
             +C
Sbjct: 418 -KKC 420


>gi|213853108|ref|ZP_03382640.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 436

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 168/406 (41%), Positives = 236/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+++VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E        E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTIAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|149280565|ref|ZP_01886681.1| NADH dehydrogenase I chain F [Pedobacter sp. BAL39]
 gi|149228680|gb|EDM34083.1| NADH dehydrogenase I chain F [Pedobacter sp. BAL39]
          Length = 453

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 205/422 (48%), Positives = 264/422 (62%), Gaps = 18/422 (4%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           N+ G+   +L     +G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+
Sbjct: 11  NVPGIN--TLDVYRQKGGYRAVEKALKTLTPDEVVEEVKKSGLRGRGGAGFPTGMKWSFL 68

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            K     P YLV NADESEPGT KDR +M H PH LIEG +++SFA+GA+ ++IYVRGE 
Sbjct: 69  AK-PEGVPRYLVCNADESEPGTFKDRYLMTHIPHALIEGMIVSSFALGANTSYIYVRGEM 127

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           + +   L+ A+ E   +G LG N    GYD+++ V  G GAYICGEETALLESLEGK+G 
Sbjct: 128 MPQIRILERAIAEAKQAGFLGKNILGTGYDLELYVQPGGGAYICGEETALLESLEGKRGN 187

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR+KPPFPA  GLYGCPT VNNVESIA    I+  G   Y+  G   + GTKL S SG++
Sbjct: 188 PRIKPPFPAIAGLYGCPTVVNNVESIAATVPIINDGGEEYAKIGIGRSTGTKLISASGNL 247

Query: 249 NYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPA------GQMRG 300
             P   E  + +  +E I   ++CGGI      L A + GGSSVP LPA           
Sbjct: 248 VRPGVYEIELGLPVEEFIYSDEYCGGIA-NGKRLKATVAGGSSVPVLPANLTLKLANGDP 306

Query: 301 AIMDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +M Y+ L       G+ +G+   I  D    I++  W  + FY HESCGQC+PCREGTG
Sbjct: 307 RLMSYESLSEGGFATGTMMGSGGFIAFDEDQCIVRNTWNFARFYHHESCGQCSPCREGTG 366

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           WM +V+ R+  G  +  +IDLL +VSKNIEG TIC LGDAAAWP+   I++FR   E  +
Sbjct: 367 WMEKVLHRIEYGHGKMSDIDLLVDVSKNIEGNTICPLGDAAAWPVASAIRHFRDEFEWHV 426

Query: 417 DQ 418
            +
Sbjct: 427 KE 428


>gi|319950456|ref|ZP_08024370.1| hypothetical protein ES5_12775 [Dietzia cinnamea P4]
 gi|319435879|gb|EFV91085.1| hypothetical protein ES5_12775 [Dietzia cinnamea P4]
          Length = 466

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 202/420 (48%), Positives = 259/420 (61%), Gaps = 15/420 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L   +  G +  +   L    D +I+ V  SGLRGRGGAGF TG KW F+P+    
Sbjct: 15  DSWTLQAYLDNGGYSGLRTALAAEPDEVISTVLDSGLRGRGGAGFPTGRKWGFIPQDTGA 74

Query: 76  ---------RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
                    RPHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI A  AFIY+R
Sbjct: 75  DAADPSAAARPHYLVVNADESEPGTCKDMPLMLATPHVLIEGVIIAAYAIRASRAFIYLR 134

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE +     LQ AV E Y +G LG +    G+D++++VH GAGAYICGEETALL+SLEG+
Sbjct: 135 GEVVPVLRRLQTAVAEAYEAGYLGRDILGSGFDLELVVHAGAGAYICGEETALLDSLEGR 194

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +GQPRL+PPFPA  GLY CPT VNNVES+A VP+IL+ G  W+   G E + G  L+S+S
Sbjct: 195 RGQPRLRPPFPAVAGLYACPTVVNNVESLASVPSILQHGPEWFRSMGSEKSPGFTLYSLS 254

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  + IT  EL++   G        L    PGGSS P L   Q+    +DY
Sbjct: 255 GHVTRPGQYEAPLGITLRELLDLAGG--IRDGHTLKFWTPGGSSTPLLTDAQL-DMPLDY 311

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G    G+ LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++M RL
Sbjct: 312 EGCAAEGTMLGTKALQIFDDTTCVVRAVLRWTEFYAHESCGKCTPCREGTFWLRQIMTRL 371

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             G A   E+D L ++S NI G++ CALGDAAA PI   I+ FR      I     C F 
Sbjct: 372 EDGTATADELDRLLDISDNIVGKSFCALGDAAAAPIVSSIRLFRDEYLAHIPNG--CPFD 429


>gi|325915544|ref|ZP_08177855.1| NADH dehydrogenase subunit F [Xanthomonas vesicatoria ATCC 35937]
 gi|325538260|gb|EGD09945.1| NADH dehydrogenase subunit F [Xanthomonas vesicatoria ATCC 35937]
          Length = 429

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF T
Sbjct: 3   HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPT 62

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 63  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 120

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 121 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K
Sbjct: 181 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L  V+PGG S+P L A Q+ G
Sbjct: 241 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 298

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 299 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 358

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I
Sbjct: 359 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 414


>gi|197124712|ref|YP_002136663.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp. K]
 gi|220919433|ref|YP_002494737.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|196174561|gb|ACG75534.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp. K]
 gi|219957287|gb|ACL67671.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 441

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 204/422 (48%), Positives = 276/422 (65%), Gaps = 8/422 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  I +  +G     SL+   + G +  +DK +      I++EVK S LRGRGGAGF+TG
Sbjct: 3   ETLILSKRWGKPDSASLASYRADGGYGALDKAMGADPAAIVDEVKKSNLRGRGGAGFATG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW+F+PK    RP YL VNADESEPGT KDR I+ H+PH LIEG  +  +A+  H A++
Sbjct: 63  LKWTFLPKD--VRPRYLTVNADESEPGTFKDRYIIEHDPHMLIEGIALTCYALDIHLAYV 120

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLES 181
           Y+RGEF ++   L+ A+ E   +G+LG     K  + +DI VH GAGAYICGEE+ALLES
Sbjct: 121 YIRGEFAKQARILEQAIQEARDAGILGPRLLGKQDFPLDIHVHRGAGAYICGEESALLES 180

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKG PRLKPPFPA VGL+G PT +NNVE+IA VP I+  G + ++  G   + GT+L
Sbjct: 181 LEGKKGYPRLKPPFPAVVGLWGKPTIINNVETIANVPWIVANGGAAFAALGVGKSGGTRL 240

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F +SGHVN P   E+ +     +LI +  GGI GG   L AVIPGGSS P L A ++   
Sbjct: 241 FGVSGHVNRPGVYEKPVHYNLKKLIMEDAGGIVGGRK-LKAVIPGGSSAPVLAAHEI-DI 298

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +++D +K  GS  G+  VIV D S  +++A+ R++ FY  ESCGQCTPCREGT WM  +
Sbjct: 299 SLEFDAVKAAGSMSGSGGVIVFDESVCLVRALARIAKFYAEESCGQCTPCREGTSWMEGI 358

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +E++  G A   +++ L +V+ NI G TICALGDAAA P+Q  +K F+P     + + HR
Sbjct: 359 LEKIEHGHATAADVEKLEQVAGNIAGNTICALGDAAAMPVQSFLKKFKPEFLRHV-EAHR 417

Query: 422 CN 423
           C 
Sbjct: 418 CP 419


>gi|114566549|ref|YP_753703.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337484|gb|ABI68332.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 407

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 165/415 (39%), Positives = 248/415 (59%), Gaps = 11/415 (2%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + ++ RI    YG +    + D +++G + +++K        +I EVK S LRGRGGAGF
Sbjct: 1   MAEEMRIVLRNYGKIDPLKIDDYLAQGGYKSLEKARAMNTADLIAEVKKSNLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           + GMKWSF     +D   Y++ NADE EPGT KDR IM ++PHTLIEG  I ++AIGA  
Sbjct: 61  NCGMKWSFAAGAQAD-QKYVICNADEGEPGTYKDRLIMENDPHTLIEGMAICAYAIGATQ 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY+RGE+     +L  A+++    GL+        D DI V  GAGAY+CGEETAL+E
Sbjct: 120 GYIYLRGEYPFLVSTLNTAINQAKEKGLV-------KDFDIEVRSGAGAYVCGEETALIE 172

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PR KPP+P + GL+  PT VNNVE+ A +P I+ +GA WY+  G     GTK
Sbjct: 173 SIEGKRGEPRFKPPYPPSEGLWSKPTIVNNVETFANIPVIIEKGADWYASIGNPAYPGTK 232

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +N     E   + T  E++ +  GG+ G      AV  GG+S   +P   +  
Sbjct: 233 VFTLTGDINNRTFFEVPTNTTIREIVFQFGGGVPGD-KKFKAVQIGGTSGAFIP-DALLD 290

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             + +D +  +G+ LG+ A  V+D S DI+    R++ F++HESCG+C PCREGT     
Sbjct: 291 TPVAFDSMSAIGATLGSGATFVIDESRDIVDVATRIAGFFEHESCGKCAPCREGTARTAE 350

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           +ME++ +G    +++ LL ++   +    +C LG AA  P+   IK+F+   E +
Sbjct: 351 LMEKINEGRGSNKDVALLEKLGTVMSYSCLCGLGQAAPAPVLTTIKHFKADYEAK 405


>gi|86160615|ref|YP_467400.1| NADH-quinone oxidoreductase subunit F [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777126|gb|ABC83963.1| NADH dehydrogenase subunit F [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 441

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 204/422 (48%), Positives = 276/422 (65%), Gaps = 8/422 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  I +  +G     SL+   + G +  +DK +      I++EVK S LRGRGGAGF+TG
Sbjct: 3   ETLILSKRWGKPDSASLASYRADGGYGALDKAMGADPAAIVDEVKKSNLRGRGGAGFATG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW+F+PK    RP YL VNADESEPGT KDR I+ H+PH LIEG  +  +A+  H A++
Sbjct: 63  LKWTFLPKD--VRPRYLTVNADESEPGTFKDRYIIEHDPHMLIEGIALTCYALDIHLAYV 120

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLES 181
           Y+RGEF ++   L+ A+ E   +G+LG     K  + +DI VH GAGAYICGEE+ALLES
Sbjct: 121 YIRGEFAKQARILEQAIQEARDAGILGPRLLGKKDFPLDIHVHRGAGAYICGEESALLES 180

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKG PRLKPPFPA VGL+G PT +NNVE+IA VP I+  G + ++  G   + GT+L
Sbjct: 181 LEGKKGYPRLKPPFPAVVGLWGKPTIINNVETIANVPWIVANGGAAFAALGVGKSGGTRL 240

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F +SGHVN P   E+ +     +LI +  GGI GG   L AVIPGGSS P L A ++   
Sbjct: 241 FGVSGHVNRPGVYEKPVHYNLKKLIMEDAGGIVGGRK-LKAVIPGGSSAPVLAAHEI-DI 298

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +++D +K  GS  G+  VIV D S  +++A+ R++ FY  ESCGQCTPCREGT WM  +
Sbjct: 299 SLEFDAVKAAGSMSGSGGVIVFDESVCLVRALARIAKFYAEESCGQCTPCREGTSWMEGI 358

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +E++  G A   +++ L +V+ NI G TICALGDAAA P+Q  +K F+P     + + HR
Sbjct: 359 LEKIEHGHATAADVEKLEQVAGNIAGNTICALGDAAAMPVQSFLKKFKPEFLRHV-EAHR 417

Query: 422 CN 423
           C 
Sbjct: 418 CP 419


>gi|167585976|ref|ZP_02378364.1| NADH-quinone oxidoreductase, F subunit [Burkholderia ubonensis Bu]
          Length = 440

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 205/416 (49%), Positives = 269/416 (64%), Gaps = 7/416 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D ++RG +  + +ILE+    + +I +VKASGLRGRGGAGF TG+K
Sbjct: 13  ILAGLNGEN-WHLEDYVARGGYKQLRRILEEKIPPEQVIADVKASGLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDI+R  PH LIEG  I ++A+G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDILRWNPHALIEGMAIGAYAMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        +AA++E  A+G LG+N     +   +  HHG GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYRRFEAALEEARAAGFLGNNIMGSEFSFQLHAHHGYGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ G+YG PTT+NN E+ A VP +L  G   Y+  G+ NN GTK+FS+
Sbjct: 191 KKGQPRFKPPFPASFGVYGKPTTINNTETFAAVPFLLTVGPQAYAELGKPNNGGTKIFSV 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +   F  L+E   G    G   + AVIPGGSS P +P   M    MD
Sbjct: 251 SGDVERPGNYEVPLGTPFATLMELAGGM--RGGKKIKAVIPGGSSAPVIPGDIMMQTDMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVMD +  +++++ RLS FY  ESCGQCTPCREGTGW+ RV+ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMDETRCMVRSLLRLSYFYYEESCGQCTPCREGTGWLYRVVNR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +  G  ++ ++DLL  V++NI GRTICALGDAAA P++G++K++       ++  H
Sbjct: 369 IEHGEGRQEDLDLLNSVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHVEHKH 424


>gi|21243427|ref|NP_643009.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78048404|ref|YP_364579.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|294624673|ref|ZP_06703343.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|294666772|ref|ZP_06732006.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325924680|ref|ZP_08186118.1| NADH dehydrogenase subunit F [Xanthomonas perforans 91-118]
 gi|21108980|gb|AAM37545.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78036834|emb|CAJ24527.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|292601029|gb|EFF45096.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292603433|gb|EFF46850.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|325544886|gb|EGD16231.1| NADH dehydrogenase subunit F [Xanthomonas perforans 91-118]
          Length = 444

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF T
Sbjct: 18  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L  V+PGG S+P L A Q+ G
Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I
Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429


>gi|253689144|ref|YP_003018334.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755722|gb|ACT13798.1| NADH-quinone oxidoreductase, F subunit [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 449

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 172/409 (42%), Positives = 243/409 (59%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDEYRSKNGYVAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M  EPH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP I+  GA+WY G   G+  + GTKL   SG V  P
Sbjct: 203 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTENHL-DLPMDFEHIAKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS +GTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L  G  Q
Sbjct: 321 GSRMGTALAMAVDHEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I + 
Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQ 429


>gi|260588480|ref|ZP_05854393.1| protein HymB [Blautia hansenii DSM 20583]
 gi|331082243|ref|ZP_08331370.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540955|gb|EEX21524.1| protein HymB [Blautia hansenii DSM 20583]
 gi|330403037|gb|EGG82602.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 624

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 155/425 (36%), Positives = 239/425 (56%), Gaps = 6/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            +  Q RI   N      +SL + ++ G ++ + K L +   + ++NEV  S LRGRGG 
Sbjct: 136 FIAKQTRIALENCGKFDAESLDEYIASGGYEALSKALFDMTPEDVLNEVDKSKLRGRGGG 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  +        H++V N DE +PG   D  +M  +P+ LIEG  IA++A GA
Sbjct: 196 GFPTGRKWKQVAAHKDVAEHFVVCNGDEGDPGAFMDGSVMEGDPYRLIEGMTIAAYATGA 255

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +    GLLG +     +   + ++ GAGA++CGE +A
Sbjct: 256 QNGYIYVRAEYPLSVARLRKAIRQAEEKGLLGDHILGTDFQFHMHINRGAGAFVCGEGSA 315

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP   + GL+  PT +NNVE+ A VP I+ +GA W+   G E + 
Sbjct: 316 LTASIEGDRGMPRVKPPRTVDKGLWAKPTVLNNVETFANVPGIVLKGADWFKTIGTEGSP 375

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FSI+G +     +E  M  T  E+I    GGI+GG D   A+  GG S  CL    
Sbjct: 376 GTKTFSITGAIENTGLIEVPMGTTLREIIYDIGGGIKGGGD-FKAIQIGGPSGGCLTKEH 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D +K+  + +G+  ++VMD +T +++       F + ESCG+C PCREGT  
Sbjct: 435 L-DVGLDFDSVKKYNAIMGSGGLVVMDENTCMVEVARFFMSFTQRESCGKCVPCREGTKR 493

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  +  ++D L E++  ++   +C LG +A  P+   +K FR   EE I 
Sbjct: 494 MLEILERIVNGEGKLEDLDTLEELAAMVKNMALCGLGKSAPLPVISTLKTFRKEYEEHIV 553

Query: 418 QYHRC 422
           + H+C
Sbjct: 554 E-HKC 557


>gi|283853098|ref|ZP_06370353.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
 gi|283571496|gb|EFC19501.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
          Length = 491

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 147/425 (34%), Positives = 231/425 (54%), Gaps = 6/425 (1%)

Query: 3   TDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
             Q RI T N   +  +++ D ++   ++ + K+L      +++ +K SGLRGRGG GF 
Sbjct: 8   KKQLRIATRNCGFIDPENIDDYIALRGYEGLAKVLTMSPADVVDLIKRSGLRGRGGGGFP 67

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW       +D   Y+V NADE +PG   DR ++  +PH+++E   I  +AIGA   
Sbjct: 68  TGVKWGIALANAAD-QKYMVCNADEGDPGAFMDRAVLEGDPHSVVEAMAIGGYAIGATVG 126

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            +Y+R E+    + L+ A+D+    GLLG+N    G+D DI + +GAGA++CGEETAL+ 
Sbjct: 127 TVYIRAEYPLAIKRLKKAIDDARDYGLLGTNIFGSGFDFDIEIKYGAGAFVCGEETALIR 186

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G+P  KPPFPA  G +  PT VNNVE+ A VP I+  GA W++G G    +GTK
Sbjct: 187 SMEGQRGEPVSKPPFPAQSGYWEKPTIVNNVETFANVPAIILNGADWFAGIGTATTKGTK 246

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +     +E  M IT  E+I    GG         AV  GG S   L    +  
Sbjct: 247 VFALAGKIQNVGLIEVPMGITLREVIFDIGGGCP-DGKAFKAVQTGGPSGGALSYKDL-D 304

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+ L    S +G+  ++VMD    ++        F   E+CG+CTPCR G+  +  
Sbjct: 305 VAIDYESLIARKSMMGSGGMVVMDEDDCMVSIAKFFLDFTMDETCGKCTPCRVGSKRLYE 364

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++++ KG   + ++D L  +S+ I+   +C LG     PI   +  F       + Q  
Sbjct: 365 ILDKITKGKGTQADLDRLKSLSEVIKDTALCGLGQTMPNPILSTMDTFGHEYAAHV-QDK 423

Query: 421 RCNFQ 425
           +C   
Sbjct: 424 KCPAH 428


>gi|134301120|ref|YP_001114616.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134053820|gb|ABO51791.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 575

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 147/421 (34%), Positives = 230/421 (54%), Gaps = 6/421 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + + ++ G ++ + K L    R  +I  VK SGLRGRGG 
Sbjct: 138 FYKKQLRVALRNCGLINPEDIYEYIAVGGYEALGKALTQMSRAEVIEIVKKSGLRGRGGG 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K   D   +++ NADE +PG   DR I+  +PH++IE   I ++AIGA
Sbjct: 198 GFPTGLKWEITSKQE-DEEKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L  A+ +    G+LG       ++ D+ + +GAGA++CGEETA
Sbjct: 257 DKGIVYIRAEYPLAISRLTTALRQARELGVLGKGIFGTSFNFDVRLKYGAGAFVCGEETA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S EGK+G+P  KPP+PA  G +G PT VNNVE+ A +P I+ RGA W++  G E ++
Sbjct: 317 LINSCEGKRGEPNYKPPYPAEEGYWGHPTCVNNVETFANIPVIMTRGAEWFASIGTEKSK 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M ITF E+I    GGI        AV  GG S   +    
Sbjct: 377 GTKVFALAGKINNVGLVEVPMGITFREIIFDIGGGIP-HGKKFKAVQTGGPSGGVITEKG 435

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L E+GS +G+  +IVMD   +++        F   E+CG+C P R GT  
Sbjct: 436 L-DTPIDYDSLLEIGSMMGSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCVPGRIGTKR 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ ++  G A   +ID L +++  ++  ++C L   A  P+   +K+F       ++
Sbjct: 495 LFEMLHKITSGKATMADIDALKQLAYMVKDSSLCGLCQTAPNPVISTMKHFWHEYLAFVE 554

Query: 418 Q 418
            
Sbjct: 555 D 555


>gi|330826547|ref|YP_004389850.1| NADH-quinone oxidoreductase subunit F [Alicycliphilus denitrificans
           K601]
 gi|329311919|gb|AEB86334.1| NADH-quinone oxidoreductase, F subunit [Alicycliphilus
           denitrificans K601]
          Length = 449

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 214/412 (51%), Positives = 271/412 (65%), Gaps = 11/412 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I+  L G    S+ D  +RG +  + KIL K       +D +I  VK SGLRGRGGAGF 
Sbjct: 29  IYAGLNGSN-WSIKDYEARGGYAALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       +LV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G    
Sbjct: 88  TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISLG 146

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE  +  E  +AA++E  A+G LGSN     +   +  HHG GAYICGEETALLE
Sbjct: 147 YNYIHGEIFQVYERFEAALEEARAAGYLGSNIMDSDFSFQLHAHHGFGAYICGEETALLE 206

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK
Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 266

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V  P   E  +   F +L+E   G        L AVIPGGSS P LPA  M  
Sbjct: 267 IFSVSGDVERPGNYEIPLGTPFAKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASIMME 324

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S D+++++ RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 325 CTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLMRLSYFYMHESCGQCTPCREGTGWLWR 384

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           V+ R+  G  +  +I++L  V+ NI GRTICALGDAAA P++ +IK+FR   
Sbjct: 385 VVHRIQHGQGRVEDIEVLDSVAFNIMGRTICALGDAAAMPVRAMIKHFRHEF 436


>gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23]
 gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23]
          Length = 635

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +   +L K    +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  SD   Y+V NADE +PG   DR IM  +PH+++E   +  ++IG+
Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+++    GLLG +     +  DI + +GAGA++CGEETA
Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   ++++D L  + + I+   +C LG  +  P+   + NF     E + 
Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYMEHVR 565

Query: 418 QYHRC 422
               C
Sbjct: 566 D-KTC 569


>gi|289665178|ref|ZP_06486759.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289667375|ref|ZP_06488450.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 444

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF T
Sbjct: 18  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L  V+PGG S+P L A Q+ G
Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I
Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429


>gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 616

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 155/422 (36%), Positives = 236/422 (55%), Gaps = 7/422 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   +    + D +    +  + + L       +I+ V+ASGLRGRGG GF T
Sbjct: 134 QTRIVLRNSGRINPGKIEDYLVNSGYQALARALTAMTPGEVIDVVEASGLRGRGGGGFPT 193

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW F  +  S    Y++ NADE +PG   DR ++  +PH ++E  VIA +A+GA    
Sbjct: 194 GKKWRFAAQRKS-AEKYIICNADEGDPGAFMDRAVLEGDPHAVLEAMVIAGYAVGARHGV 252

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+R E+    + L+ A+++  A  +LG +    G+D D+ + +GAGA++CGEETAL++S
Sbjct: 253 IYIRAEYPLAIKRLETALEQARALRVLGGDILGSGFDFDLKLKYGAGAFVCGEETALIQS 312

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G P  KPPFPA  GL+  PT VNNVE++A +P I+R GA W+ G G E++ GTK+
Sbjct: 313 IEGKRGMPTYKPPFPAVEGLWKRPTIVNNVETLANIPAIMRNGAQWFRGIGTESSPGTKV 372

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G V+    VE  M  T  E+I    GGI        AV  GG S  CL +  +   
Sbjct: 373 FALAGKVDRVGLVEVPMGTTLREIIFGVGGGI-HEGKAFKAVQTGGPSGGCLTSANL-DL 430

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DYD LK  GS +G+  +IVMD    ++        F   ESCG+C PCR G+  +  V
Sbjct: 431 PIDYDSLKAAGSMMGSGGMIVMDEDDCMVDVAKFFLEFTMDESCGKCLPCRIGSKQLHLV 490

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++R+ KG   + +++ +  ++  +   ++C LG  A  P+   ++NF    +  I    R
Sbjct: 491 LDRISKGEGAQEDLESIRSIAAAMATASLCGLGQTAPNPVLSTLRNFPEEYQAHIAD-KR 549

Query: 422 CN 423
           C 
Sbjct: 550 CP 551


>gi|319761767|ref|YP_004125704.1| NADH-quinone oxidoreductase, f subunit [Alicycliphilus
           denitrificans BC]
 gi|317116328|gb|ADU98816.1| NADH-quinone oxidoreductase, F subunit [Alicycliphilus
           denitrificans BC]
          Length = 449

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 215/412 (52%), Positives = 272/412 (66%), Gaps = 11/412 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I+  L G    S+ D  +RG +  + KIL K       +D +I  VK SGLRGRGGAGF 
Sbjct: 29  IYAGLNGSN-WSIKDYEARGGYAALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+    R  +LV N+DE EPGTCKDRDI+ + PH +IEG +IA++A+G    
Sbjct: 88  TGLKWSFMPRQFP-RQKHLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIAAYAMGISLG 146

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE  +  E  +AA++E  A+G LGSN     +   +  HHG GAYICGEETALLE
Sbjct: 147 YNYIHGEIFQVYERFEAALEEARAAGYLGSNIMDSDFSFQLHAHHGFGAYICGEETALLE 206

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK
Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 266

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V  P   E  +   F +L+E   G        L AVIPGGSS P LPA  M  
Sbjct: 267 IFSVSGDVERPGNYEIPLGTPFAKLLELAGG--VRKGRQLKAVIPGGSSAPVLPASIMME 324

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S D+++++ RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 325 CTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLMRLSYFYMHESCGQCTPCREGTGWLWR 384

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           V+ R+  G  +  +I++L  V+ NI GRTICALGDAAA P++ +IK+FR   
Sbjct: 385 VVHRIQHGQGRVEDIEVLDSVAFNIMGRTICALGDAAAMPVRAMIKHFRHEF 436


>gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22]
 gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22]
          Length = 635

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +   +L K    +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  SD   Y+V NADE +PG   DR IM  +PH+++E   +  ++IG+
Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+++    GLLG +     +  DI + +GAGA++CGEETA
Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   ++++D L  + + I+   +C LG  +  P+   + NF     E + 
Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYMEHVR 565

Query: 418 QYHRC 422
               C
Sbjct: 566 D-KTC 569


>gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 635

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +   +L K    +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  SD   Y+V NADE +PG   DR IM  +PH+++E   +  ++IG+
Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+++    GLLG +     +  DI + +GAGA++CGEETA
Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   ++++D L  + + I+   +C LG  +  P+   + NF     E + 
Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYMEHVR 565

Query: 418 QYHRC 422
               C
Sbjct: 566 D-KTC 569


>gi|261346153|ref|ZP_05973797.1| NADH oxidoreductase, F subunit [Providencia rustigianii DSM 4541]
 gi|282565806|gb|EFB71341.1| NADH oxidoreductase, F subunit [Providencia rustigianii DSM 4541]
          Length = 453

 Score =  465 bits (1197), Expect = e-129,   Method: Composition-based stats.
 Identities = 171/409 (41%), Positives = 244/409 (59%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +  V++ L+    D ++N VK +GL+GRGGAGFSTG+KWS MPK  +
Sbjct: 27  QPVWLDEYRSKNGYKGVERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDEN 86

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +  Y + NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE+I   +
Sbjct: 87  MKLRYFLCNADEMEPGTYKDRLLMEELPHLLVEGMIIGAYALKAYRGYIFLRGEYIEAAK 146

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 147 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 206

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA  G +G PT VNNVE+I  VP IL  G  WY     G+  + GTKL   SG V  P
Sbjct: 207 PFPATSGAWGKPTCVNNVETICNVPAILEHGDQWYIDLSAGKSKDAGTKLMGFSGRVKNP 266

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 267 GLWELPFGTTAREVLEDYAGGMRDGLK-LKAWQPGGAGTDFLTNDHL-DLPMDFENIAKA 324

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W +++++ L KG  Q
Sbjct: 325 GSRLGTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQ 384

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I + 
Sbjct: 385 EGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRKEFEAGISKK 433


>gi|397903|emb|CAA48365.1| NADH dehydrogenase I, subunit nuoF [Escherichia coli]
          Length = 445

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 238/406 (58%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q     +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWRDEYRSKNGYEGARKRLTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G +G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGAWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++ RL +G  Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRRLERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 425


>gi|297159513|gb|ADI09225.1| NADH dehydrogenase I chain F [Streptomyces bingchenggensis BCW-1]
          Length = 460

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 195/418 (46%), Positives = 256/418 (61%), Gaps = 13/418 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  ++   +    ++ + + L    D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 28  QSWTMETYLRHDGYEGMRRALAMAPDDVIALVKDSGLRGRGGAGFPTGMKWQFIPQ-GDG 86

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH LIEG VIA  AI +  AFIY+RGE +     
Sbjct: 87  KPHYLVVNADESEPGTCKDIPLLFANPHALIEGMVIACHAIRSQHAFIYLRGEVVPVLRR 146

Query: 136 LQAAVDECYASGLLGS----NSKLG----YDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           L  AV E Y +G LG       KLG     D++I VH GAGAYICGEETALL+SLEG++G
Sbjct: 147 LHEAVREAYEAGYLGKADARRQKLGLADLPDLEITVHAGAGAYICGEETALLDSLEGRRG 206

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           QPRL+PPFPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGH
Sbjct: 207 QPRLRPPFPAVAGLYACPTVVNNVESIASVPAILTKGNEWFRSMGSEKSPGFTLYSLSGH 266

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V  P   E  + IT  +L++   G        L    PGGSS P L    +    +DY+G
Sbjct: 267 VAAPGQYEGPLGITLRQLLDMSGG--IRPGHRLKFWTPGGSSTPLLTEEHL-DVPLDYEG 323

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           +   GS LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  
Sbjct: 324 VGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEA 383

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           G  +  ++  L +++ NI G++ CALGD AA PI   +K F+   E+ I     C F 
Sbjct: 384 GKGRMEDLAKLADIADNINGKSFCALGDGAASPIFSSLKYFKEEYEQHITGGG-CPFD 440


>gi|331699307|ref|YP_004335546.1| NADH-quinone oxidoreductase subunit F [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953996|gb|AEA27693.1| NADH-quinone oxidoreductase, F subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 450

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/414 (48%), Positives = 262/414 (63%), Gaps = 8/414 (1%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T  + L    S+        +  +   L    D +IN VK SGLRGRGGAGF TGMKW
Sbjct: 20  VLTRRWQLDRSWSIDTYERTDGYTALRTALAAHPDQLINLVKDSGLRGRGGAGFPTGMKW 79

Query: 67  SFMPKVCSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           SF+P+  +    +P YLV+NADE EPGTCKD   M  +PH+LIEGCVI S+AI A+   I
Sbjct: 80  SFIPQGPTGAGAKPKYLVINADEGEPGTCKDIPTMMADPHSLIEGCVITSYAIRANFCAI 139

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVRGE +     L+ AV+E YA G LG +    G+D+DI+VH GAGAYICGEETALL+SL
Sbjct: 140 YVRGEALHCIRRLRRAVEEAYAKGYLGRDILGSGFDLDIVVHAGAGAYICGEETALLDSL 199

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++GQPRLKPPFPA  GLY  PT VNNVE+IA VP I+  G++W+   G E + G K++
Sbjct: 200 EGRRGQPRLKPPFPATSGLYASPTVVNNVETIASVPDIVAGGSAWFRTMGTERSPGPKIY 259

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+SGHV  P   E  +  T  EL+E   GG++ G   L    PGGSS P   A  +    
Sbjct: 260 SLSGHVERPGQYEAPLGTTLRELLE-LAGGMKDGIP-LKFWTPGGSSTPLFTAEHL-DVP 316

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D++G    GS LGT AV + + +  +  A+ + + FYKHESCG+CTPCREGT W+++++
Sbjct: 317 LDFEGAAAAGSMLGTTAVQIFNETVSVPWAVMKWTEFYKHESCGKCTPCREGTYWLVQIL 376

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ER+V G     ++D + ++  NI GR+ CALGD A  PI   IK FR    + I
Sbjct: 377 ERMVHGEGTPEDVDTMLDICDNILGRSFCALGDGATSPITSAIKYFRQEFLDLI 430


>gi|58582853|ref|YP_201869.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84624719|ref|YP_452091.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188577691|ref|YP_001914620.1| NADH-quinone oxidoreductase, f subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|58427447|gb|AAW76484.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84368659|dbj|BAE69817.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522143|gb|ACD60088.1| NADH-quinone oxidoreductase, f subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 444

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF T
Sbjct: 18  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKASNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L  V+PGG S+P L A Q+ G
Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I
Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429


>gi|332662318|ref|YP_004445106.1| NADH-quinone oxidoreductase subunit F [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331132|gb|AEE48233.1| NADH-quinone oxidoreductase, F subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 452

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 202/413 (48%), Positives = 262/413 (63%), Gaps = 16/413 (3%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +   +  G +  V+K L+    D +  EVK SGLRGRGGAGF TGMKWSF+ K  +D+P 
Sbjct: 19  IEGYIKHGGYRAVEKALKKMQPDEVTEEVKKSGLRGRGGAGFPTGMKWSFIFK-GNDKPR 77

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADESEPGT KDR +M   PH LIEG + +SFA+G   A+IY+RGE++     LQ 
Sbjct: 78  YLLCNADESEPGTFKDRLLMEKIPHLLIEGMIASSFALGVKTAYIYIRGEYMYILHILQK 137

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+DE YA G LG N     Y +D+ VH G GAYICGEETAL+ESLEGK+G PR+KPPFPA
Sbjct: 138 AIDEAYAKGYLGENILGTTYSLDLHVHPGGGAYICGEETALIESLEGKRGNPRIKPPFPA 197

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+GCPT VNNVE+I  VP I+  G   Y+  G   + GTKL S  G++N P   E  
Sbjct: 198 VEGLWGCPTIVNNVETICKVPFIINEGGETYANIGIGASTGTKLISACGNINKPGVYEIE 257

Query: 258 MSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDGLK 309
           + +  +E I   ++CGGI+GG   L A++PGGSSVP LP   +         +M Y+ L 
Sbjct: 258 LGVPVEEFIYSDEYCGGIKGG-KQLKALVPGGSSVPILPNRLITKTAKGEPRLMSYESLS 316

Query: 310 ----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
                 GS LG+   IV D    I++  W  S FY HESCGQC+PCREGTGWM +++ R+
Sbjct: 317 DGGFPTGSMLGSGGFIVFDEDQCIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKILHRM 376

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             G  +  +IDLL++V + IEG TIC  GDA+AWP+   I++FR   E  +  
Sbjct: 377 EYGHGRMEDIDLLWDVQRKIEGNTICPFGDASAWPVAAAIRHFRDEFEWHVLH 429


>gi|188991034|ref|YP_001903044.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732794|emb|CAP50988.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris]
          Length = 444

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF T
Sbjct: 18  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPADVIEMVKASNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L  V+PGG S+P L A Q+ G
Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I
Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429


>gi|50121947|ref|YP_051114.1| NADH dehydrogenase I subunit F [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612473|emb|CAG75923.1| NADH-quinone oxidoreductase chain F [Pectobacterium atrosepticum
           SCRI1043]
          Length = 449

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 172/409 (42%), Positives = 242/409 (59%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDEYRSKNGYVAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M  EPH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G +G PT VNNVE++  VP I+  GA+WY G   G+  + GTKL   SG V  P
Sbjct: 203 PFPASAGAWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTESHL-DLPMDFEHIAKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS +GTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L  G  Q
Sbjct: 321 GSRMGTALAMAVDHEINMVSLTRNLEEFFSRESCGWCTPCRDGLPWSVKILRALENGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I + 
Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQ 429


>gi|312200062|ref|YP_004020123.1| NADH-quinone oxidoreductase F subunit [Frankia sp. EuI1c]
 gi|311231398|gb|ADP84253.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EuI1c]
          Length = 436

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/407 (48%), Positives = 260/407 (63%), Gaps = 5/407 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
            +L      G + +V      G D +I  VK SGLRGRGGAGF TGMKWSF+P+    +P
Sbjct: 17  WTLETYAEHGGYSSVQAAFNLGPDAVIKMVKDSGLRGRGGAGFPTGMKWSFIPQ-GDGKP 75

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
           HYLVVNADE EPGTCKD  +M  +PH+LIEG ++ASFA+ A+ A++YVRGE I     L+
Sbjct: 76  HYLVVNADEGEPGTCKDAPLMMTDPHSLIEGIIVASFAVRANRAYVYVRGELIHAARRLR 135

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            AV E Y +G LG+N    G+D+D+++H GAGAYICGEETALL+SLEG++GQPRL+PPFP
Sbjct: 136 NAVAEAYRAGYLGTNILGSGFDLDLVIHSGAGAYICGEETALLDSLEGRRGQPRLRPPFP 195

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GLY  PT +NNVE+IA VP I+  G  W+   G E + G K++S+SGHV  P   E 
Sbjct: 196 ATHGLYNSPTVINNVETIASVPFIVNNGVEWFRSMGTEKSPGPKIYSLSGHVTRPGQYEA 255

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  T  EL+E   G    G   L A  PGGSS P L A  +    +D+DG+   GS LG
Sbjct: 256 PMGTTLRELLELAGG--VRGGRALKAWTPGGSSTPMLTAEHL-DVPLDFDGVAAAGSLLG 312

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           TAA+++MD + D++  + RL+ FY HESCG+CTPCREGT W+++++ R+ +G    R+ID
Sbjct: 313 TAALMIMDDTVDMVPVVRRLTQFYAHESCGKCTPCREGTPWLVQILSRMERGQGDPRDID 372

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            L +   NI GR  CAL D A  PI   IK+F            +  
Sbjct: 373 TLTDACDNIFGRAFCALADGAVSPIVSGIKHFPEEFAAAAKPREQAP 419


>gi|166712609|ref|ZP_02243816.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 444

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 208/416 (50%), Positives = 267/416 (64%), Gaps = 8/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+      +I  VK S LRGRGGAGF T
Sbjct: 18  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKVSNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L  V+PGG S+P L A Q+ G
Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I
Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429


>gi|312890391|ref|ZP_07749928.1| NADH dehydrogenase subunit F [Mucilaginibacter paludis DSM 18603]
 gi|311297161|gb|EFQ74293.1| NADH dehydrogenase subunit F [Mucilaginibacter paludis DSM 18603]
          Length = 453

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 202/422 (47%), Positives = 262/422 (62%), Gaps = 18/422 (4%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           N+ G+   +     S+G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+
Sbjct: 11  NVPGIN--TFDVYRSKGGYAAVEKALKTLTPDEVVEEVKKSGLRGRGGAGFPTGMKWSFL 68

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            K       YLV NADESEPGT KDR +M + PH LIEG ++AS+A+GA  ++IYVRGE 
Sbjct: 69  AK-PEGVARYLVCNADESEPGTFKDRFLMTYIPHLLIEGMIVASYALGAKVSYIYVRGEM 127

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           + +   L+ A+ E    G LG N    GYD+++ V  G GAYICGEETALLESLEGK+G 
Sbjct: 128 MPQIRILEKAIAEAKNKGFLGKNILGTGYDLELYVQPGGGAYICGEETALLESLEGKRGN 187

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR+KPPFPA  GLYGCPT VNNVESIA V  I+  G   Y+  G   + GTKL S SG++
Sbjct: 188 PRIKPPFPAIAGLYGCPTVVNNVESIAAVVPIINDGGEEYAKIGIGRSTGTKLISASGNI 247

Query: 249 NYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI---- 302
             P   E  + +  +E +   ++CGG+        A++ GGSSVP LPA  +   I    
Sbjct: 248 KNPGIYEIELGVPVEEFLYSDEYCGGMA-NGKRFKALVAGGSSVPILPANLVTKTINQEA 306

Query: 303 --MDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
             M Y+ L       G+ +G+   IV D    I++  W  + FY HESCGQC+PCREGTG
Sbjct: 307 RLMSYESLSDGGFATGTMMGSGGFIVFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTG 366

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           WM +V+ RL  G  +  ++DLL +VSK IEG TIC LGDAAAWP+   I++FR   E  +
Sbjct: 367 WMEKVLHRLEYGHGKMSDMDLLVDVSKKIEGNTICPLGDAAAWPVASAIRHFRDEFEWHV 426

Query: 417 DQ 418
             
Sbjct: 427 TH 428


>gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
          Length = 635

 Score =  464 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +   +L K    +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  SD   Y+V NADE +PG   DR IM  +PH+++E   +  ++IG+
Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+++    GLLG +     +  DI + +GAGA++CGEETA
Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLSTGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   ++++D L  + + I+   +C LG  +  P+   + NF     E + 
Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYMEHVR 565

Query: 418 QYHRC 422
               C
Sbjct: 566 D-KTC 569


>gi|290475913|ref|YP_003468808.1| NADH dehydrogenase I subunit F [Xenorhabdus bovienii SS-2004]
 gi|289175241|emb|CBJ82044.1| NADH dehydrogenase I chain F [Xenorhabdus bovienii SS-2004]
          Length = 454

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 170/406 (41%), Positives = 237/406 (58%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+    D +   VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 28  QPVWLDEYRSKSGYKGAEKALKGMVPDEVTTLVKDAGLKGRGGAGFSTGLKWSLMPKDES 87

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE++    
Sbjct: 88  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAV 147

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 148 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 207

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA  G++G PT VNNVE++  VP IL  G  WY G   G+  + GTKL   SG V  P
Sbjct: 208 PFPATSGVWGKPTCVNNVETLCNVPAILEYGKEWYIGLSEGKSKDAGTKLMGFSGRVKNP 267

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G     A  PGG+    L    +    MD++ + + 
Sbjct: 268 GVWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTVDHL-DLPMDFENIAKA 325

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +I+     L  F+  ESCG CTPCR+G  W ++++  +  G  Q
Sbjct: 326 GSRLGTALAMAVDHEINIVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRAIENGKGQ 385

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 386 PGDIETLEQLCRFLGPGKTFCAHAPGAMEPLQSAIKYFRDEFEAGI 431


>gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
 gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
          Length = 634

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 156/423 (36%), Positives = 235/423 (55%), Gaps = 7/423 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFS 61
           + Q  +  N   +  +SL + ++R  +  + + L  G  + +I EVK S LRGRGG GF 
Sbjct: 146 SQQRVVLGNSGLVDPESLEEYVARDGYFALWESLSAGSPEEVIEEVKESNLRGRGGGGFP 205

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW F+    +D   YL+ NADE +PG   DR ++  +P+ ++EG  IA +A+GA   
Sbjct: 206 TGMKWEFLAGNDAD-LKYLICNADEGDPGAYMDRTLLESDPYAVLEGMTIAGYALGAEKG 264

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVR E+    E LQ A+++   +GLLG +    G+D D+ +  GAGA++CGEETA++ 
Sbjct: 265 YIYVRAEYPLAIERLQHAIEQAREAGLLGQDIFGEGFDFDLEIKKGAGAFVCGEETAMIN 324

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +G P+ +PP+PA+ GL+  PT VNNVE+ A VP ILR GA W++  G E + GTK
Sbjct: 325 SLEGGRGMPKPRPPYPADEGLWAEPTNVNNVETWANVPAILRNGAEWFADIGTEESGGTK 384

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS++G V     VE  +    +E++ +             AV  GG S   +P      
Sbjct: 385 VFSVTGDVENTGLVEVPLGTRLEEVVFEIG--GGTTGGEFKAVQTGGPSGGVIPREH-AE 441

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+ L E+GS +G+  +IVMD ST ++        F   ESCG+C PCR GT  M+ 
Sbjct: 442 TPIDYETLMELGSMMGSGGMIVMDESTCMVDQSRFFLEFSVDESCGKCPPCRYGTKQMLE 501

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++E +  G A    I  L  +  ++E  ++C LG  AA P+   +  F       ++   
Sbjct: 502 MLEGITNGAADPDVISELRSLGDSMEEMSLCGLGQTAANPVMSTLDYFEDEYRNHVED-E 560

Query: 421 RCN 423
            C 
Sbjct: 561 ECP 563


>gi|300114497|ref|YP_003761072.1| NADH-quinone oxidoreductase subunit F [Nitrosococcus watsonii
           C-113]
 gi|299540434|gb|ADJ28751.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus watsonii
           C-113]
          Length = 424

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 167/415 (40%), Positives = 241/415 (58%), Gaps = 7/415 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72
            +   L      G +  + + ++      ++ EVK S LRGRGGAGF TG KWSF+P   
Sbjct: 13  REPPDLKQYAQAGGYQGLQRAIKTLTPQEVLQEVKESNLRGRGGAGFPTGKKWSFVPMGD 72

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            + RP YLV NADE EPGT KDR +M  +PH L+EG ++AS+AI A  A+I++R E+   
Sbjct: 73  DAPRPKYLVANADEMEPGTFKDRLLMEGDPHQLLEGMILASYAIQAEVAYIFLRAEYRLA 132

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
            + L+ A+ E Y    LG N     + +++ +H  AG YICGEETALL +LEGK+  PR 
Sbjct: 133 AQRLKKAIAEAYEMNYLGKNLLGSAFSLELHLHTSAGRYICGEETALLNALEGKRAIPRA 192

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPP+P   GL+G PT VNNVE++  VP I+ RGA+WY    R  + GTK +  SG V +P
Sbjct: 193 KPPYPQVSGLWGQPTVVNNVETLCNVPHIIARGAAWYQNLSRSEDGGTKFYGASGRVKHP 252

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M     E++E+H GG++ G+  L  ++PGG+S   L    +    MDYD ++  
Sbjct: 253 GAWELPMGTPIREILEEHAGGMKDGF-QLRGLLPGGASTDFLTEEHL-DVPMDYDSVQSA 310

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT  +I++D  T  +  +  L  F+  ESCG CTPCR+G  W+ +++  + +G  Q
Sbjct: 311 GSRLGTGTMIILDDRTCPVGMLCNLEHFFAQESCGWCTPCRDGLPWVEKILLGIEQGQGQ 370

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             ++D L   ++ +  G T CA    A  P+Q  +K FR   E+ I  + RC F+
Sbjct: 371 PEDLDYLTMHTRLLGPGHTFCAHAPGAMEPLQSALKYFRADFEQHI-HHQRCPFK 424


>gi|121604335|ref|YP_981664.1| NADH-quinone oxidoreductase subunit F [Polaromonas
           naphthalenivorans CJ2]
 gi|120593304|gb|ABM36743.1| NADH dehydrogenase subunit F [Polaromonas naphthalenivorans CJ2]
          Length = 473

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 217/418 (51%), Positives = 276/418 (66%), Gaps = 11/418 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I  NL G     L D  SRG +  + KIL +        D +I EVKA GLRGRGGAGF 
Sbjct: 38  ILANLDGSN-WHLGDYESRGGYQALRKILGQDGGAGLTPDQVIAEVKAGGLRGRGGAGFP 96

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       YLV N+DE EPGTCKDRDIM++ PH++IEG  IA++A+G    
Sbjct: 97  TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDIMQYNPHSVIEGMAIAAYAMGISVG 155

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE     +  +AA+DE  A+GLLG N     ++  +   HG GAYICGEET LLE
Sbjct: 156 YNYIHGEIFATYQRFEAALDEARAAGLLGDNILGSNFNFQLHAAHGFGAYICGEETGLLE 215

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN GTK
Sbjct: 216 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGGTK 275

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           ++S+SG V  P   E  M   F +L+E   G        L AVIPGGSS P LPA  M  
Sbjct: 276 IYSVSGDVELPGNYEVPMGTPFAKLLELAGG--VRKGRTLKAVIPGGSSSPVLPASSMME 333

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S  +++++ RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 334 CTMDYDSIAKAGSMLGSGAVIVMDDSRCMVESLKRLSYFYMHESCGQCTPCREGTGWLWR 393

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           V++R+  G+ ++ ++DLL  V+ NI+GRTICALGDAAA P++ +IK++R   E  I +
Sbjct: 394 VVDRIHNGLGRQSDLDLLNSVADNIQGRTICALGDAAAMPVRAMIKHYRHEFEAMIPK 451


>gi|212712280|ref|ZP_03320408.1| hypothetical protein PROVALCAL_03366 [Providencia alcalifaciens DSM
           30120]
 gi|212685026|gb|EEB44554.1| hypothetical protein PROVALCAL_03366 [Providencia alcalifaciens DSM
           30120]
          Length = 452

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 168/409 (41%), Positives = 244/409 (59%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +  +++ L+    D ++N VK +GL+GRGGAGFSTG+KWS MPK  +
Sbjct: 26  QPVWLDEYRSKNGYKGLERALKGMAPDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDEN 85

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +  Y + NADE EPGT KDR +M   PH L+EG +  ++A+ A+  +I++RGE++    
Sbjct: 86  MKLRYFLCNADEMEPGTYKDRLLMEQLPHLLVEGMITGAYALKAYRGYIFLRGEYVEAAR 145

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 146 NLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 205

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G +G PT VNNVE+I  VP IL  G  WY     G+  + GTKL   SG V  P
Sbjct: 206 PFPASSGAWGKPTCVNNVETICNVPAILEHGDQWYINLSAGKSKDAGTKLMGFSGRVKNP 265

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 266 GLWELPFGTTAREVLEDYAGGMRDGLK-LKAWQPGGAGTDFLTNDHL-DLPMDFENIAKA 323

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W +++++ L KG  Q
Sbjct: 324 GSRLGTALAMAVDNEINMVSLVRNLETFFARESCGWCTPCRDGLPWSVKILQALEKGEGQ 383

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I + 
Sbjct: 384 EGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRGEFEAGISKK 432


>gi|62632270|gb|AAX89149.1| HoxF [Allochromatium vinosum]
          Length = 538

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 149/419 (35%), Positives = 238/419 (56%), Gaps = 7/419 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             + Q RI     G +   SL   ++ G +  + + L E     ++ EV  SGLRGRGG 
Sbjct: 119 FFSRQQRIVLEHSGLIDPDSLRGYIAVGGYAALVRALTEMTPADVLREVTTSGLRGRGGG 178

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KWS + K+      Y+V NADE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 179 GYPTGLKWSTIAKMPPG-QKYVVCNADEGDPGAFMDRAVLESDPHRVLEGMAIAAYAVGA 237

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    E L+ A+ +   +G LG   +   +  ++ +  GAGA++CGEETA
Sbjct: 238 SKGYVYVRAEYPLAVERLETAIRKAKRAGFLGAKVADTQFAFEVEIRLGAGAFVCGEETA 297

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +GQPR +PP+PA  GL+GCPT +NNVE+ A +  I+R G  W++  G E ++
Sbjct: 298 LMASIEGLRGQPRPRPPYPAESGLWGCPTLINNVETFANIAPIIREGGDWFAAIGTEGSK 357

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M  +  ++IE   GGI        AV  GG S  C+P   
Sbjct: 358 GTKVFALAGKIKNTGLIEVPMGTSLRDIIEVIGGGIP-DGRAFKAVQTGGPSGGCIPRRH 416

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK +G+ +G+  +IVMD ++ ++    R   F   ESCG+C PCR GT  
Sbjct: 417 L-DIPVDYDSLKTLGTIMGSGGLIVMDETSCMVDVA-RFMEFCMSESCGKCIPCRAGTWQ 474

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M  +++ L K    + ++ LL ++   +   ++C LG  A  P+   ++ FR   E ++
Sbjct: 475 MHALLDTLTKAEGTRADLALLEDLCDVVRATSLCGLGQTAPNPVLSTLRYFRDEYEAKL 533


>gi|88602558|ref|YP_502736.1| NADH dehydrogenase (quinone) [Methanospirillum hungatei JF-1]
 gi|88188020|gb|ABD41017.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Methanospirillum hungatei JF-1]
          Length = 562

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 151/419 (36%), Positives = 236/419 (56%), Gaps = 6/419 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q + I  +   +  + + + +  G +    K L     D II+EVK SGLRGRGGA
Sbjct: 143 FFAHQKKVILRDSGLINPEDIDEYIGIGGYFAAYKALTSMKPDAIIDEVKRSGLRGRGGA 202

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G+KW    K   +   ++V NADE +PG   +R+ M  +PH L+EG +I ++A+G 
Sbjct: 203 GFPAGLKWEITKKAPGE-EKFIVCNADEGDPGAYMNRNEMESDPHMLLEGMLIGAYAMGV 261

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               IY+R E+    E L  A+D+    GLLG N    G+D DI +  GAGA++CGE TA
Sbjct: 262 SEGLIYIRAEYPLAIERLMLALDQARTYGLLGKNIFNTGFDFDIRIATGAGAFVCGESTA 321

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK G+PRL+PP     G++G PT +NNVE+   VP I+ +GA WYS  G + N 
Sbjct: 322 LAASIEGKTGRPRLRPPRLTEKGVFGKPTDLNNVETWCNVPVIIAKGALWYSSIGAKGNT 381

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G V+    VE  +  +   +I     G   G + + AV  GG S  C+P  +
Sbjct: 382 GTKVFSLVGKVDNIGMVEVPLGTSLHSIIYDIGNGGALGKE-VKAVQTGGPSGGCIPV-R 439

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D++ L ++G+ +G+  ++VMD  T+++        F   ESCG+C PCREG   
Sbjct: 440 LFDTPVDFESLNQVGTMMGSGGLVVMDEDTNMVDIARYFINFASGESCGKCVPCREGLKH 499

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           M+ ++ R+V G   +++I LL E+++ ++  ++C LG  A  P+   ++ F+   ++ I
Sbjct: 500 MLLILNRIVAGKGTRQDIGLLRELAETVQKTSLCGLGQTAPNPVLTTMQYFKEEYDDLI 558


>gi|160893746|ref|ZP_02074530.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50]
 gi|156864731|gb|EDO58162.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50]
          Length = 661

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 148/425 (34%), Positives = 234/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  +++++ ++ G +  + K+L       +I  +  S LRGRGG 
Sbjct: 174 FYKKQTRLVLKNCGHIDAENINEYLAVGGYQALRKVLFTMEPSEVIQVISDSNLRGRGGG 233

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  + +   ++  Y+V N DE +PG   DR +M  +PH ++EG +IA++A+GA
Sbjct: 234 GFPTGYKWQQVARQA-EKIRYVVCNGDEGDPGAFMDRSVMEGDPHKMLEGMIIAAYAVGA 292

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+      L+ A+ +   +G LG +     +   I ++ GAGA++CGE +A
Sbjct: 293 QEGYVYVRAEYPLAVSRLKTAIAQAEEAGFLGEDILGSDFSFHIHINRGAGAFVCGEGSA 352

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG++G PR KPP     GL+  PT +NNVE+ A V  I+  GA WY   G E + 
Sbjct: 353 LTASIEGQRGMPRTKPPRTVEQGLFAKPTVLNNVETYANVSMIILNGADWYKSIGPEKSP 412

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G V     +E  M     E++    GG++     L AV  GG S  CL    
Sbjct: 413 GTKAFALTGSVKNTGLIEVPMGTKLREIVYDIGGGLKDDIP-LKAVQIGGPSGGCLVTDD 471

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK  G+ +G+  ++VMD +T +++       F ++ESCG+C PCREGT  
Sbjct: 472 LE-VSLDFDSLKSKGAMIGSGGLVVMDENTCLVEVARFFMNFTQNESCGKCVPCREGTKR 530

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G     ++DLL E+ + I    +C LG +AA P+   +KNFR    E + 
Sbjct: 531 MLEILERIVAGNGTLEDLDLLEELGQAITDTALCGLGKSAALPVLSTLKNFRQEYIEHVV 590

Query: 418 QYHRC 422
              RC
Sbjct: 591 D-KRC 594


>gi|21231955|ref|NP_637872.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66767918|ref|YP_242680.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|21113686|gb|AAM41796.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573250|gb|AAY48660.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 444

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF T
Sbjct: 18  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPGDVIEMVKASNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFENFELALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L  V+PGG S+P L A Q+ G
Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRKLKGVVPGGVSMPVLKADQVAG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I
Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429


>gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 632

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 239/426 (56%), Gaps = 8/426 (1%)

Query: 1   MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
              +Q   I   +   + +S+ D M+RG + ++ K+L    R  II ++KA+GLRGRGG 
Sbjct: 146 FFKNQTFYIMEAIGTSECESIEDYMARGGYTSLAKVLSGMDRKEIIEQIKAAGLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW        D   Y+V NADE +PG   +R ++  +PH+++EG +IA++ IGA
Sbjct: 206 GFPTGLKWEAAYNSKGDI-KYVVCNADEGDPGAFMNRTLLERDPHSVLEGMIIAAYTIGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+    E    A+++    GLLG N     +  ++ V  GAGA++CGEETA
Sbjct: 265 QKGYAYIRAEYPIAVEMFNKAIEDAKEYGLLGENILGTDFSFELYVKEGAGAFVCGEETA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EGK+G PR +PPFPA  GL+G PT +NNVES A VP I+R G   Y   G E + 
Sbjct: 325 LLASIEGKRGVPRPRPPFPAQSGLWGKPTLINNVESYANVPKIIRDGVENYRKRGVEKSP 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E     T   +++  CGG       + A+  GG S  CLP   
Sbjct: 385 GTKMFSVTGPLKLTGIIEIQFGTTLRYILDNICGGT-SNGQKIKAIQIGGPSGACLPEE- 442

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK +G+ +G+  ++ +     +++       F K ESCG+C PCREGT  
Sbjct: 443 LFDLPLDYDTLKSVGAMVGSGGIVAITEDRCMVEVARFFLDFTKRESCGKCVPCREGTTQ 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
              ++E+  +G A   +++ L ++S+ I+  ++C LG  A  PI   +K F+    E I+
Sbjct: 503 AYNILEKFTQGKATYEDLETLEQLSEIIKTASLCGLGKTAPNPIISTLKYFKNEYIEHIE 562

Query: 418 QYHRCN 423
              +C 
Sbjct: 563 --GKCP 566


>gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
 gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
          Length = 635

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +   +L K    +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  SD   Y+V NADE +PG   DR IM  +PH+++E   +  ++IG+
Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+++    GLLG +     +  DI + +GAGA++CGEETA
Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   ++++D L  + + I+   +C LG  +  P+   + NF     E + 
Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYNEYMEHVR 565

Query: 418 QYHRC 422
               C
Sbjct: 566 D-KTC 569


>gi|291618185|ref|YP_003520927.1| NuoF [Pantoea ananatis LMG 20103]
 gi|291153215|gb|ADD77799.1| NuoF [Pantoea ananatis LMG 20103]
 gi|327394578|dbj|BAK12000.1| NADH-quinone oxidoreductase chain F Nuof [Pantoea ananatis AJ13355]
          Length = 448

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 172/404 (42%), Positives = 240/404 (59%), Gaps = 5/404 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+    D I+  VK SGL+GRGGAGFSTG+KWS MPK  S
Sbjct: 24  QPVWLDEYRSKNGYAGAEKALKGMAPDEIVALVKDSGLKGRGGAGFSTGLKWSLMPKDES 83

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 84  MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 143

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 144 HLRRAIAEATEAGLLGKNILGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 203

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE+++ VP IL  G  WY G  + ++ GTKL   SG V  P  
Sbjct: 204 PFPASAGVWGKPTCVNNVETLSNVPAILANGVEWYQGLSKSDDAGTKLMGFSGRVKNPGV 263

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E    IT  E++E + GG+R G     A  PGG+    L   Q     M++  + + GS
Sbjct: 264 WELPFGITAREILEDYAGGMRDGL-RFKAWQPGGAGTDFLT-EQHLDLPMEFASIGKAGS 321

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  
Sbjct: 322 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKKGQPG 381

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 382 DIETLEQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 425


>gi|317052150|ref|YP_004113266.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
 gi|316947234|gb|ADU66710.1| NADH dehydrogenase (quinone) [Desulfurispirillum indicum S5]
          Length = 572

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 146/426 (34%), Positives = 232/426 (54%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q + +  N   +  +++ D ++ G +  +   L E   + + + +  SGLRGRGG 
Sbjct: 119 FFQRQHKLVLENSGLIDPENIDDYIAAGGYSALALALTEMTPEEVCDAITKSGLRGRGGG 178

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW  + K   +   ++V N DE +PG   DR +M  +PH L+EG  IA +A GA
Sbjct: 179 GYPTGVKWQLVRKAPGE-RKFVVANGDEGDPGAYMDRTLMESDPHRLLEGMAIAGYASGA 237

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              ++YVRGE+    E L+ A+ +   +G+LG+      +   + V  GAGA++CGEETA
Sbjct: 238 QHGYLYVRGEYPVAAERLRKAIKDAQKAGILGNQVLGSRFSFTLEVRIGAGAFVCGEETA 297

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+ GK+GQP  +PP+PA  GL+GCPT +NNVE+   V  I+R G   ++  G   +R
Sbjct: 298 LMASITGKRGQPVPRPPYPAQRGLWGCPTLINNVETFGSVANIVRDGWEAFAAIGTPKSR 357

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     +E  M I+  E++    GG+        A   GG S  C+P   
Sbjct: 358 GTKIFALCGEVENTGLIEVPMGISLREVVFDIGGGLG-EGKTFKAAQTGGPSGGCIPIQH 416

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MDY+ L+E+GS +G+  +IVM ++T ++        F   ESCG+CTPCR GT  
Sbjct: 417 L-DTPMDYESLQELGSIMGSGGLIVMGQNTCMVDVAKFFMEFSLDESCGKCTPCRAGTAQ 475

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R++  +  G A   ++D L  +   +   ++C LG  A  P+ G ++ FR      I+
Sbjct: 476 LYRLLTNIGNGSATIEDMDHLENLCAMVRDTSLCGLGITAPNPVLGTLQYFRDEYLAHIE 535

Query: 418 QYHRCN 423
           + H C 
Sbjct: 536 KRH-CP 540


>gi|120402878|ref|YP_952707.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955696|gb|ABM12701.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium vanbaalenii
           PYR-1]
          Length = 441

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 212/415 (51%), Positives = 274/415 (66%), Gaps = 8/415 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  SL      G +  +D+ L    D +I  VK SGLRGRGGAGF TG KWSF+P+    
Sbjct: 16  QPWSLDTYRRHGGYQALDRALAMTPDQVITTVKDSGLRGRGGAGFPTGTKWSFIPQGDEG 75

Query: 76  R---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
               PHYLV+NADESEPGTCKD  +M   PH L+EG +IA++AI AH AFIY+RGE +  
Sbjct: 76  PAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRAHHAFIYLRGEVVPV 135

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQAAV E YA+G LGS+    G+D+++IVH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 136 LRRLQAAVAEAYAAGHLGSDIHGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRL 195

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLY CPT VNNVESIA VP +L  G  W+   G E + G  L+S+SGHV  P
Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPVLLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+E + GG+R G + L    PGGSS P L A  +    +DY+G+  +
Sbjct: 256 GQYEAPLGITLRELLE-YAGGVRAGHE-LKFWTPGGSSTPLLTAEHL-DVPLDYEGMAGV 312

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 313 GSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGAGT 372

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR-CNFQ 425
           + ++D L ++S NI G++ CALGD AA PI   +K+FR   E  +D   + C F 
Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRAEYEAHLDPVGKGCPFD 427


>gi|240169665|ref|ZP_04748324.1| NADH dehydrogenase I (chain F) NuoF (NADH- ubiquinone
           oxidoreductase chain F) [Mycobacterium kansasii ATCC
           12478]
          Length = 443

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 205/413 (49%), Positives = 265/413 (64%), Gaps = 8/413 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP---KVC 73
             +L        +  + K L    D +I  VK SGLRGRGGAGF+TG KWSF+P   K  
Sbjct: 22  SWTLETYRRHDGYRAMHKALSMDPDAVIGTVKDSGLRGRGGAGFATGTKWSFIPQGDKGA 81

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           + +PHYLVVNADESEPGTCKD  +M   PH L+EG +IA++AI AH AFIYVRGE +   
Sbjct: 82  AAKPHYLVVNADESEPGTCKDIPLMLATPHVLVEGIIIAAYAIRAHHAFIYVRGEVLPVL 141

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             LQ AV E YA+G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+
Sbjct: 142 RRLQNAVAEAYAAGYLGRNIAGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLR 201

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GLYGCPT +NNVE+IA VP I+  G  W+   G E + G  L+S+SGHV  P 
Sbjct: 202 PPFPAVAGLYGCPTVINNVETIASVPAIILHGVDWFRSMGTEKSPGFTLYSLSGHVTRPG 261

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+  +G
Sbjct: 262 QYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAVG 318

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G    
Sbjct: 319 SMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGTH 378

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            +ID L ++S +I G+  CALGD AA P+   I  FR      + +   C F 
Sbjct: 379 EDIDKLLDISDSILGKAFCALGDGAASPVMSSINYFRDEYVAHV-EGGGCPFD 430


>gi|197285616|ref|YP_002151488.1| NADH dehydrogenase I subunit F [Proteus mirabilis HI4320]
 gi|227356119|ref|ZP_03840509.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis ATCC 29906]
 gi|194683103|emb|CAR43660.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis HI4320]
 gi|227163764|gb|EEI48676.1| NADH-quinone oxidoreductase chain F [Proteus mirabilis ATCC 29906]
          Length = 454

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/409 (41%), Positives = 234/409 (57%), Gaps = 7/409 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
            Q   L +  ++  +   +K L+    D + +EVK +GL+GRGGAGFSTG+KWS MPK  
Sbjct: 27  RQPVWLDEYRAKNGYKAAEKALKSMAPDEVTSEVKDAGLKGRGGAGFSTGLKWSLMPKDE 86

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           S    Y++ NADE EPGT KDR +M   PH LIEG +I + A+ A+  +I++RGE+I   
Sbjct: 87  SMNIRYILCNADEMEPGTYKDRLLMEELPHLLIEGMIIGAHALKAYRGYIFLRGEYIEAA 146

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           + L+ A++E  A+G LG N    G D ++ VH GAG YICGEETAL+ SLEG++  PR K
Sbjct: 147 KHLRHAIEEAKAAGFLGKNIFGSGIDFELFVHTGAGRYICGEETALINSLEGRRANPRSK 206

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR--GTKLFSISGHVNY 250
           PPFPA  G +G PT VNNVE++  VP I+  G  WY G     +   GTKL   SG V Y
Sbjct: 207 PPFPATSGAWGKPTCVNNVETLCNVPAIIEHGKDWYIGLSAGKSPDAGTKLMGFSGRVKY 266

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E     T  E++E + GG+R G   L A  PGG+    L    +    MD+  + +
Sbjct: 267 PGLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTEDHL-DLPMDFGTIAK 324

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W + ++  + KG  
Sbjct: 325 AGSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVEILRAIEKGQG 384

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +  +I+ L  + +++  G T CA    A  P+Q  IK FR   E  I Q
Sbjct: 385 RPGDIETLEHLCRSLSPGHTFCAHAPGAVEPLQSAIKYFREEFEAGIIQ 433


>gi|325921406|ref|ZP_08183263.1| NADH dehydrogenase subunit F [Xanthomonas gardneri ATCC 19865]
 gi|325548164|gb|EGD19161.1| NADH dehydrogenase subunit F [Xanthomonas gardneri ATCC 19865]
          Length = 444

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 209/416 (50%), Positives = 268/416 (64%), Gaps = 8/416 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+      +I  VKAS LRGRGGAGF T
Sbjct: 18  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIAPADVIEMVKASNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E+ + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFENFELALVDAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG PTT+NN E+ A VP I+R G  W+ G  +  N G K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPTTINNTETYASVPAIIRNGPEWFLGLSKTKNGGPK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L  V+PGG S+P L A Q+ G
Sbjct: 256 IFSVSGCVQKGGNFEVPLGTTFDELLEMAGG--LRPGRTLKGVVPGGVSMPVLKADQVAG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +G+GLG+ A++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRALGTGLGSGAIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I
Sbjct: 374 VLERIVAGKATMEDLHQLRTVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYI 429


>gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 635

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 151/425 (35%), Positives = 234/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  +   +L K  + +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQMRIALRNCGFIDPENIEEYIALDGYMALADSLLHKKPEEVIDVIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  +D   Y+V NADE +PG   DR IM  +PH+++E   +  ++IG+
Sbjct: 209 GFPTGLKWEFANKQKADM-KYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMAVCGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    + L+ A+ +    GLLG N     +  DI + +GAGA++CGEETA
Sbjct: 268 PKGLVYIRAEYPLAIQRLKIAIAQAREYGLLGKNIFGTDFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W+S  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAEAGYLGKPTNVNNVETLANIPIILTKGAEWFSSIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLAEGSMMGSGGMIVMDEDDCMVSVSRFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G    +++D L  + K I+   +C LG  +  P+   + NF     E + 
Sbjct: 506 LLEMLNKITEGRGTMKDLDALSTLGKVIKDTALCGLGQTSPNPVLSTLNNFYDEYVEHVR 565

Query: 418 QYHRC 422
               C
Sbjct: 566 D-KTC 569


>gi|289641422|ref|ZP_06473586.1| NADH-quinone oxidoreductase, F subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289508758|gb|EFD29693.1| NADH-quinone oxidoreductase, F subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 442

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 207/398 (52%), Positives = 268/398 (67%), Gaps = 5/398 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L+   S   +  + + LE G D II  VK SGLRGRGGAGF TGMKWSF+P+   D
Sbjct: 15  ESWTLAVYESTDGYQALRQALELGPDDIIKIVKDSGLRGRGGAGFPTGMKWSFIPQ-GDD 73

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           RPHYLV+NADE EPGTCKD  +M  +PH+L+EG +IA++A+ AH AFIY+RGE +     
Sbjct: 74  RPHYLVINADEGEPGTCKDAPLMTADPHSLVEGIIIAAYAVRAHRAFIYLRGELVHCGRR 133

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+AAV E Y +G LG +    G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 134 LRAAVAEAYRAGYLGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPP 193

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVE+IA VP ++RRG  W+   GRE + G K++S+SGHV  P   
Sbjct: 194 FPATHGLYASPTVVNNVETIATVPFVIRRGVEWFRSMGRERSPGPKIYSLSGHVTRPGQY 253

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T  EL+E   G    G   L A  PGGSS P L A  +    +D++G+ E GS 
Sbjct: 254 EAPMGTTLAELLELAGG--IRGGRRLKAWTPGGSSTPMLTADHL-DVPLDFEGVVEAGSL 310

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGTAA+++MD + D++K + RL+ FY HESCG+CTPCREGT WM++++ RL +G     +
Sbjct: 311 LGTAAIMIMDETVDMLKVVRRLTQFYAHESCGKCTPCREGTTWMVQILSRLERGQGDAED 370

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +D L +   NI GR  CAL D A  PI   IK FR   
Sbjct: 371 VDTLVDACDNIFGRAFCALADGATSPIVSGIKFFRDEF 408


>gi|171463531|ref|YP_001797644.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193069|gb|ACB44030.1| NADH-quinone oxidoreductase, F subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 432

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 203/418 (48%), Positives = 264/418 (63%), Gaps = 8/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMK 65
           I   L G     L D  SRG +  + +++      D +I E+KAS LRGRGGAGF TG+K
Sbjct: 13  ILAGLNG-DNWCLKDYESRGGYQQLRRLINDKVAPDVVIAELKASSLRGRGGAGFPTGLK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           WSFMP+       YLV N+DE EPGT KDRDIMR+ PH LIEG +I ++ +G    + Y+
Sbjct: 72  WSFMPRQFPG-QKYLVCNSDEGEPGTFKDRDIMRYNPHALIEGMIIGAYTMGITVGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE        + A++E  A+G LG       +   +    G GAYICGEETALLESLEG
Sbjct: 131 HGEIFEVYSRFEEALEEARAAGYLGDKILGSDFSFQLHASPGWGAYICGEETALLESLEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPA+ GLYG PTT+NN E+ A VP IL  G   Y   G+ NN GTK+FSI
Sbjct: 191 KKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFILAIGGQAYLDLGKLNNGGTKIFSI 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V +P   E  +   F EL++   G        L AVIPGGSS P +P  QM    MD
Sbjct: 251 SGDVVHPGNYEIPLGTPFAELLKLAGGM--RDGKALKAVIPGGSSSPVVPGAQMMELTMD 308

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + + GS LG+ AVIVM+ +  +++A+ RLS FY  ESCGQCTPCREGTGW+ R++ R
Sbjct: 309 YDSIAKAGSMLGSGAVIVMNETRCMVRALERLSYFYHEESCGQCTPCREGTGWLWRIVHR 368

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +  G  +  ++DLL +V+ NI+GRTICALGDAAA P++G++K++       + ++ RC
Sbjct: 369 IEHGEGRPEDLDLLNDVAANIQGRTICALGDAAAMPVRGMLKHYMDEFVYHV-EHKRC 425


>gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
 gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
          Length = 635

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 149/425 (35%), Positives = 232/425 (54%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++   +  +   +L K  + +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQMRIALRNCGFIDPENIEEYIALDGYMALADSLLHKKPEEVIDVIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW F  K  +D   Y+V NADE +PG   DR IM  +PH+++E   +  ++IG+
Sbjct: 209 GFPTGKKWEFAHKQQADM-KYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMAVCGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    + L+ A+ +    GLLG N     +  DI + +GAGA++CGEETA
Sbjct: 268 PKGLVYIRAEYPLAIQRLKIAIAQAREYGLLGKNIFGTDFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +G  W++  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAEAGYLGKPTNVNNVETLANIPIILTKGVEWFASIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLAEGSMMGSGGMIVMDEDDCMVSVSRFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G    +++D L  + K I+   +C LG  +  P+   + NF     E + 
Sbjct: 506 LLELLNKITEGRGTMKDLDALSTLGKVIKDTALCGLGQTSPNPVLSTLNNFYDEYVEHVR 565

Query: 418 QYHRC 422
               C
Sbjct: 566 D-KTC 569


>gi|317492619|ref|ZP_07951046.1| NADH oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919369|gb|EFV40701.1| NADH oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 453

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 171/406 (42%), Positives = 244/406 (60%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+   +D ++N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 27  QPVWLDEYRSKSGYQGAEKALKGMAQDEVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 86

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +IA+FA+ ++  +I++RGE++    
Sbjct: 87  MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIAAFALKSYRGYIFLRGEYVEAAV 146

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 147 NLRKAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 206

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP I+  G  WY G   G+  + GTKL   SG V  P
Sbjct: 207 PFPASSGVWGKPTCVNNVETLCNVPAIIEHGVDWYKGLSAGKSEDAGTKLMGFSGRVKNP 266

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD+  + + 
Sbjct: 267 GLWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLTGDHL-DLPMDFASIGKA 324

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 325 GSRLGTALAMAVDNEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 384

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ +++  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 385 PGDIETLEQLCRHLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 430


>gi|94968339|ref|YP_590387.1| NADH-quinone oxidoreductase, F subunit [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550389|gb|ABF40313.1| NADH dehydrogenase subunit F [Candidatus Koribacter versatilis
           Ellin345]
          Length = 439

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 191/422 (45%), Positives = 259/422 (61%), Gaps = 5/422 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           D+ ++ ++ +G     +   +    +  V K L    D IINEVKAS LRGRGGAGF TG
Sbjct: 9   DEVKVISSRWGKGATDIDRYLELDGYKAVQKALTMTPDAIINEVKASNLRGRGGAGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSF+PK  S +P Y++ N DESEPGTCKDR I  H+PH +IEG +IA  A+GA  A+I
Sbjct: 69  LKWSFVPK-ESAKPKYILCNGDESEPGTCKDRLIFEHDPHGVIEGAIIAGLAVGAKSAYI 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE+      +Q A+ + YA G +G N    G D D+  H GAGAY  GEE+AL+ESL
Sbjct: 128 YLRGEYRYLSIIMQKAIADAYAKGFIGKNIFGSGKDFDVYWHGGAGAYEVGEESALMESL 187

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G PR++PPFPA VGL+G PT +NN E++A VP IL  G   Y+  G   N GT+LF
Sbjct: 188 EGKRGIPRIRPPFPAVVGLWGGPTVINNAETLAAVPAILLMGGQKYADLGTPRNGGTRLF 247

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG++  P   E  M     ++I +  G    G   L AV+PGGSS P L A ++    
Sbjct: 248 CLSGNLEKPGVYELPMGYNLKKMIYEVGG-GIQGGRGLKAVVPGGSSTPVLTADEI-DIA 305

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D + + GS LG+  V+V+D  T I+K   R   FY+HESCG C PCREGT W+ + +
Sbjct: 306 MDFDSVMKAGSMLGSGGVVVLDDRTCIVKFALRTIKFYQHESCGWCIPCREGTDWLKKTL 365

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R   G   K++ID +  ++ N+ GRT C LGDAAA P    ++ FR   E+ + +   C
Sbjct: 366 TRFHAGGGIKKDIDNIKYLADNMLGRTFCPLGDAAAMPTIAFVEKFRKEFEDHL-EGRPC 424

Query: 423 NF 424
            F
Sbjct: 425 PF 426


>gi|169629225|ref|YP_001702874.1| NADH-quinone oxidoreductase, F subunit NuoF [Mycobacterium
           abscessus ATCC 19977]
 gi|169241192|emb|CAM62220.1| NADH-quinone oxidoreductase, F subunit NuoF [Mycobacterium
           abscessus]
          Length = 434

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 206/411 (50%), Positives = 264/411 (64%), Gaps = 7/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L   +  G +  +   L    D +I  VK +GLRGRGGAGF TG KWSF+P+    
Sbjct: 18  DAWTLDGYLRHGGYRGLRTALGMDPDAVIALVKEAGLRGRGGAGFPTGAKWSFIPQ-GDG 76

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  +M   PHTLIEG VIA+FAI A  AFIYVRGE I     
Sbjct: 77  KPHYLVVNADESEPGTCKDIPLMLATPHTLIEGIVIAAFAIRASQAFIYVRGEVISVIRR 136

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L AAV + Y +G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 137 LHAAVAQAYKAGYLGRNILDSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 196

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVESIA VP ILRRGA W+   G E + G  L+S+SGHV  P   
Sbjct: 197 FPAVAGLYASPTVVNNVESIASVPVILRRGAEWFRTMGTEKSPGFTLYSLSGHVRTPGQY 256

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + +T  +L+E   G        L    PGGSS P   A Q+    +DY+G+   GS 
Sbjct: 257 EAPLGVTLRQLLELAGG--VRDGRALKFWTPGGSSTPLFTAEQL-DVPLDYEGVSAAGSM 313

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W++R+++RL  G  +  +
Sbjct: 314 LGTKALQIFDDTTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVRILQRLESGEGKAED 373

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L ++S  + G++ CALGD AA PI   +K FR   E  +D    C F 
Sbjct: 374 LDKLLDISDIVLGKSFCALGDGAASPIMSSLKYFRTEYEAHLDNG--CPFD 422


>gi|154495354|ref|ZP_02034359.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC
           43184]
 gi|154085278|gb|EDN84323.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC
           43184]
          Length = 561

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 148/426 (34%), Positives = 225/426 (52%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  + + L E   + +I E+  SGLRGRGG 
Sbjct: 75  FYKKQLRIALRNCGFINPENIDEYIARDGYVALGRALTEMTPESVIKEIMDSGLRGRGGG 134

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    KV +    Y+V NADE +PG   DR I+  +PH+++E   I  +  GA
Sbjct: 135 GFPTGLKWQITRKVKAP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 193

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    E L+ A+ +    GLLG N     +  DI + +GAGA++CGEETA
Sbjct: 194 TKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIFGTDFSFDIEIRYGAGAFVCGEETA 253

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+ A VP IL +GA W+S  G E ++
Sbjct: 254 LIHSMEGLRGEATVKPPFPSEQGYKGCPTNVNNVETYANVPVILLKGAEWFSSIGTEKSK 313

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E +    GG         AV  GG S  CL    
Sbjct: 314 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPSGGCLTEKH 372

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   GS +G+  +IVMD    ++        F   ESCG+C PCR G   
Sbjct: 373 L-DLPIDYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKR 431

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++++  G     +++ L  ++  I+   +C LG  +  P+   + NF       + 
Sbjct: 432 LHEMLQKITSGNGTIEDLERLRNLAGVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVK 491

Query: 418 QYHRCN 423
           +  RC 
Sbjct: 492 E-KRCP 496


>gi|190575273|ref|YP_001973118.1| putative NADH dehydrogenase I chain F [Stenotrophomonas maltophilia
           K279a]
 gi|190013195|emb|CAQ46828.1| putative NADH dehydrogenase I chain F [Stenotrophomonas maltophilia
           K279a]
          Length = 446

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 205/420 (48%), Positives = 265/420 (63%), Gaps = 8/420 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+    + +I  VKASGLRGRGGAGF T
Sbjct: 18  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK   +   Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 78  GLKWSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E  + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYANGWLGKNILGSGVDIDIYGALGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG P+T+NN E+   VP I+R G  W+ G     N G K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            FS+SG V      E  +   F +L+E   G        L   IPGG S+P L A +++ 
Sbjct: 256 CFSVSGCVQNGGNFEVPLGTKFHDLLEMAGG--LRPGRTLKGAIPGGVSMPVLTAAELKD 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD ++ +GSGLG+ A++V+D S   +K   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LPMDYDTIRALGSGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I   H
Sbjct: 374 VLERIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433


>gi|259907931|ref|YP_002648287.1| NADH dehydrogenase I subunit F [Erwinia pyrifoliae Ep1/96]
 gi|224963553|emb|CAX55043.1| NADH dehydrogenase I chain F [Erwinia pyrifoliae Ep1/96]
 gi|283477812|emb|CAY73728.1| NADH dehydrogenase I chain F [Erwinia pyrifoliae DSM 12163]
          Length = 446

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/404 (41%), Positives = 240/404 (59%), Gaps = 5/404 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+    D I++ VK SGL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVFLEEYRSKNGYAGAEKALKSMAPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDAS 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE+++ VP IL  G  WY G     + GTK+   SG V  P  
Sbjct: 202 PFPASAGVWGKPTCVNNVETLSNVPAILANGVDWYKGISTSEDAGTKMMGFSGRVKNPGV 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E++ GG+R G     A  PGG+    L   Q     M++  + + GS
Sbjct: 262 WELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLT-EQHLDLPMEFASIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKQGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  +
Sbjct: 380 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGM 423


>gi|145225065|ref|YP_001135743.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium gilvum
           PYR-GCK]
 gi|145217551|gb|ABP46955.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium gilvum
           PYR-GCK]
          Length = 438

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 205/414 (49%), Positives = 273/414 (65%), Gaps = 9/414 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72
           Q  ++   +  G +  +++ L    D +I  VK SGLRGRGGAGF TG KWSF+P+    
Sbjct: 16  QPWTMDTYIRHGGYQALERALAMSPDDVIGTVKDSGLRGRGGAGFPTGTKWSFIPQGGEG 75

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            + +PHYLV+NADESEPGTCKD  +M   PH L+EG +IA++AI A+ AFIY+RGE +  
Sbjct: 76  AAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRANHAFIYLRGEVVPV 135

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQAAV E YA+G LG +    G+D+++ VH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 136 LRRLQAAVAEAYAAGHLGHDIHGSGFDLELTVHAGAGAYICGEETALLDSLEGRRGQPRL 195

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLY CPT VNNVESIA VP IL  G  W+   G E + G  L+S+SGHV  P
Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+  + GG+R G + L    PGGSS P L A  +    +DY+G+  +
Sbjct: 256 GQYEAPLGITLRELL-DYAGGVRAGHE-LKFWTPGGSSTPLLTADHL-DVPLDYEGMAGV 312

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 313 GSMLGTKALQIFDDTTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGRGT 372

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           + ++D L ++S NI G++ CALGD AA PI   +K+FR   E  +   + C F 
Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRDEYEAHL--GNACPFD 424


>gi|158340818|ref|YP_001521986.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F,
           putative [Acaryochloris marina MBIC11017]
 gi|158311059|gb|ABW32672.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain F,
           putative [Acaryochloris marina MBIC11017]
          Length = 551

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 144/411 (35%), Positives = 244/411 (59%), Gaps = 6/411 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFST 62
               +  N   +  K + D M++  +  + + L +     +I+++  SGLRGRGG G+ T
Sbjct: 130 QHPIVLENSGHIDPKEIKDYMAQKGYLALTQALYDMTPSDVIDQITQSGLRGRGGGGYPT 189

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWS + K+      Y++ N DE +PG   DR ++  +PH ++EG  IA++A+GA+  +
Sbjct: 190 GLKWSTVAKMPPG-QKYVICNGDEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVGANQGY 248

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+RGE+      L+ A+ +    GLLGS   +  +D  I +  GAGA++CGEETAL+ S
Sbjct: 249 IYIRGEYPLAINHLETALRQARKQGLLGSQIFESPFDFRIDIRIGAGAFVCGEETALMAS 308

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G P  +PP+PA  GL+GCPT +NNVE+ A +  I+R GA W+ G G + ++GTK+
Sbjct: 309 IEGKRGLPHPRPPYPAESGLWGCPTLINNVETFANIAPIIRNGAEWFVGIGTDKSKGTKV 368

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS++G +     +E  M  +  +++E+  GG+  G  +  AV  GG S  C+PA      
Sbjct: 369 FSLAGKIQNTGLIEVPMGTSLRQIVEQMGGGVLDG--SAKAVQTGGPSGGCIPA-HAFDT 425

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ L  +GS +G+  +IVMD++T+++        F   ESCG+C PCR GT  + ++
Sbjct: 426 PVDYESLTRLGSIMGSGGMIVMDQATNMVDVARFFMEFCMEESCGKCVPCRAGTVQLYQL 485

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + ++  G A+K +++ L ++ + ++  ++C LG +A  PI   ++ F+   
Sbjct: 486 LTKICDGKARKEDLESLNQLCEMVKDTSLCGLGKSAPNPILSTLRFFKDEY 536


>gi|315445434|ref|YP_004078313.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. Spyr1]
 gi|315263737|gb|ADU00479.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. Spyr1]
          Length = 438

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 207/414 (50%), Positives = 274/414 (66%), Gaps = 9/414 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72
           Q  ++   +  G +  +++ L    D +I  VK SGLRGRGGAGF TG KWSF+P+    
Sbjct: 16  QPWTMDTYIRHGGYQALERALAMSPDEVIGTVKDSGLRGRGGAGFPTGTKWSFIPQGGEG 75

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            + +PHYLV+NADESEPGTCKD  +M   PH L+EG +IA++AI AH AFIY+RGE +  
Sbjct: 76  AAAKPHYLVINADESEPGTCKDIPLMLTTPHFLVEGAIIAAYAIRAHHAFIYLRGEVVPV 135

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQAAV E YA+G LG +    G+D+++IVH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 136 LRRLQAAVAEAYAAGHLGHDIHGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPRL 195

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLY CPT VNNVESIA VP IL  G  W+   G E + G  L+S+SGHV  P
Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLNGVDWFRSMGSEKSPGFTLYSLSGHVTTP 255

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+  + GG+R G + L    PGGSS P L A  +    +DY+G+  +
Sbjct: 256 GQYEAPLGITLRELL-DYAGGVRAGHE-LKFWTPGGSSTPLLTADHL-DVPLDYEGMAGV 312

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++ ERL  G   
Sbjct: 313 GSMLGTKALQIFDDTTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYERLETGRGT 372

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           + ++D L ++S NI G++ CALGD AA PI   +K+FR   E  +   + C F 
Sbjct: 373 EADLDKLLDISDNIFGKSFCALGDGAASPIMSSLKHFRDEYEAHL--GNACPFD 424


>gi|194366599|ref|YP_002029209.1| NADH-quinone oxidoreductase subunit F [Stenotrophomonas maltophilia
           R551-3]
 gi|194349403|gb|ACF52526.1| NADH-quinone oxidoreductase, F subunit [Stenotrophomonas
           maltophilia R551-3]
          Length = 446

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 205/420 (48%), Positives = 266/420 (63%), Gaps = 8/420 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+    + +I  VKASGLRGRGGAGF T
Sbjct: 18  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK   +   Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 78  GLKWSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E  + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYANGWLGKNVMGSGVDIDIYGALGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG P+T+NN E+   VP I+R G  W+ G     N G K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            FS+SG V      E  +  TF +L++   G        L   IPGG S+P L A +++ 
Sbjct: 256 CFSVSGCVQNGGNFEVPLGTTFHDLLQMAGG--LRPGRTLKGAIPGGVSMPVLTAAELKD 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD ++ +GSGLG+ A++V+D S   +K   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LPMDYDTIRALGSGLGSGAIVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I   H
Sbjct: 374 VLERIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433


>gi|189425850|ref|YP_001953027.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
 gi|189422109|gb|ACD96507.1| NADH dehydrogenase (quinone) [Geobacter lovleyi SZ]
          Length = 572

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 241/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  +SL   + RG ++++ + L E   D + + V  SGLRGRGG 
Sbjct: 119 FFRCQTRLVLANSGKIDPESLDQYIGRGGYESLAQALHEMTPDDVCSGVVQSGLRGRGGG 178

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW  + K  S    ++V N DE +PG   DR +M  +PH ++EG  IA +AIGA
Sbjct: 179 GYPTGLKWQLVRKS-SGSRKFVVANGDEGDPGAYMDRSLMESDPHRILEGMAIAGYAIGA 237

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              ++YVRGE+    + L+ A+ +   +GLLGS      +   I +  GAGA++CGEETA
Sbjct: 238 EQGYVYVRGEYPVAAQRLRKAIKDAERAGLLGSRVLDSSFSFRIDIRIGAGAFVCGEETA 297

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+ G++GQPR++PP+PA  GL+GCPT +NNVE+   +P+I   G   ++  G   +R
Sbjct: 298 LLASIMGRRGQPRIRPPYPAEAGLWGCPTLINNVETFGNIPSIFSIGPQAFNAIGNGKSR 357

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F++ G V     +E  M I+  E++ +  GG+  G     A   GG S  C+PA +
Sbjct: 358 GTKVFALCGEVVNNGLIEVPMGISLREIVFEIGGGLANGA-AFKAAQTGGPSGGCIPAEK 416

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L+ +GS +G+  +IVM   + ++        F   ESCG+C PCR GT  
Sbjct: 417 L-DTPVDYENLQALGSIMGSGGLIVMGEQSCMVDVARFFMEFCLDESCGKCVPCRTGTVE 475

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R++ R+  G A +R++  L ++ + ++  ++C LG AA  P+   ++ FR   E  + 
Sbjct: 476 IYRLLSRICNGSASQRDLQTLEQLCRMVKDTSLCGLGAAAPNPVLSTLRWFRAEYEAHV- 534

Query: 418 QYHRCN 423
              RC 
Sbjct: 535 GGRRCP 540


>gi|326382758|ref|ZP_08204448.1| NADH-quinone oxidoreductase subunit F [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198348|gb|EGD55532.1| NADH-quinone oxidoreductase subunit F [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 459

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 198/418 (47%), Positives = 265/418 (63%), Gaps = 11/418 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-- 73
           +  +L   + +  +  +   L    D +I +VKASGLRGRGGAGF  G KWSF+P+    
Sbjct: 27  ESWTLRSYLRQNGYQGLKSALRLSPDEVIEQVKASGLRGRGGAGFPVGTKWSFIPQGPRP 86

Query: 74  --SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
             +D PHYLVVNADESEPGTCKD  +M   PHTLIEG +IA++AI AH AFIYVRGE   
Sbjct: 87  GGADTPHYLVVNADESEPGTCKDMPLMLASPHTLIEGVIIAAYAIRAHHAFIYVRGEVAG 146

Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
               L+ AVDE Y++GL+G +    G+ +D++VH GAGAYICGEETALL+SLEG++GQPR
Sbjct: 147 VIRRLRTAVDEAYSAGLIGRDIFGSGFGMDLVVHAGAGAYICGEETALLDSLEGRRGQPR 206

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
           L+PPFPA  GLY  PT VNNVESIA VP+I+R G+ W+  FG E + G  ++S+SGHV  
Sbjct: 207 LRPPFPAVAGLYASPTVVNNVESIASVPSIMRNGSDWFREFGTEKSPGFTMYSLSGHVAR 266

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E  + IT  EL++   G        L    PGGSS P   A  +    +DY+G+  
Sbjct: 267 PGQYEAPLGITLRELLDLAGG--VRAGHQLKFWTPGGSSTPMFTAEHL-DVPLDYEGVGG 323

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT A+ + D +  +++A+ R + FY HESCG+CTPCREGT WM+++M RL  G  
Sbjct: 324 AGSMLGTKAIQIFDETVCVVRAVLRWTEFYAHESCGKCTPCREGTYWMVQMMRRLEAGEG 383

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI---DQYHRCNFQ 425
            + ++  L E++ ++ G++ CALGDA+  PI   + +FR          D    C F 
Sbjct: 384 TEDDLTTLTEITDSVVGKSFCALGDASGAPITSSLAHFRDEYLAHFPHDDHPGGCPFD 441


>gi|254522409|ref|ZP_05134464.1| NADH oxidoreductase (quinone), F subunit [Stenotrophomonas sp.
           SKA14]
 gi|219720000|gb|EED38525.1| NADH oxidoreductase (quinone), F subunit [Stenotrophomonas sp.
           SKA14]
          Length = 446

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 209/420 (49%), Positives = 268/420 (63%), Gaps = 8/420 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              ++T L+     S    +  G +  + KILE+    + +I  VKASGLRGRGGAGF T
Sbjct: 18  HQVVYTTLHYDTPWSYESYLKTGGYAALRKILEEKIPPEQVIEMVKASGLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK   +   Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+   +
Sbjct: 78  GLKWSFMPK--GNMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVGY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E  + A+ + YA+G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYANGWLGKNVMGSGVDIDIYGALGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG P+T+NN E+   VP I+R G  W+ G     N G K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYGSVPAIIRNGPEWFKGLSLTANGGPK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            FS+SG V      E  +  TFD+L+E   G        L   IPGG S+P L A +++G
Sbjct: 256 CFSVSGCVQNGGNFEVPLGTTFDDLLEMAGG--LRPGRTLKGAIPGGVSMPVLTAAELKG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD ++ +GSGLG+ AV+V+D S   +K   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LPMDYDTIRALGSGLGSGAVVVLDDSVCCVKFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I   H
Sbjct: 374 VLERIVAGKATMEDLHQLKAVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVNGH 433


>gi|163846760|ref|YP_001634804.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl]
 gi|222524574|ref|YP_002569045.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl]
 gi|163668049|gb|ABY34415.1| NADH dehydrogenase (quinone) [Chloroflexus aurantiacus J-10-fl]
 gi|222448453|gb|ACM52719.1| NADH dehydrogenase (quinone) [Chloroflexus sp. Y-400-fl]
          Length = 535

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 144/419 (34%), Positives = 239/419 (57%), Gaps = 6/419 (1%)

Query: 1   MLTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
             T Q   +  +   +  + + D ++ G +  +  ++ +     +I  +  SGLRGRGGA
Sbjct: 112 FFTRQYPIVLRHSGRINPERIEDYIAAGGYRMLYHVIHDLTPAEVIQMITRSGLRGRGGA 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K   +   +++ NADE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 172 GYPTGLKWATVAKSPGE-RKFVICNADEGDPGAFMDRSVLESDPHLVLEGMAIAAYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIYVRGE+    E LQ A+ +    GLLG+   + G++  + +  GAGA++CGEETA
Sbjct: 231 EQGFIYVRGEYPLAIERLQKAIVQARRLGLLGAQIFESGFNFRVDIRVGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++GQPR +PP+PA  GL+G PT +NNVE+ A +  I+  G  W+   G E ++
Sbjct: 291 LIASIEGRRGQPRPRPPYPAESGLWGMPTLINNVETFANISAIIEHGPEWFRQIGTEQSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M IT  E++E    G       + AV  GG S  C+PA  
Sbjct: 351 GTKVFALTGKIRNTGLIEVPMGITLREIVEDIGDGTP-DGTPVKAVQTGGPSGGCIPAS- 408

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L  +GS +G+  ++VMD  T+++        F K ESCG+C PCR GT  
Sbjct: 409 LFDTPVDYESLAAVGSIMGSGGMVVMDEHTNMVDVARFYMEFCKDESCGKCIPCRVGTVQ 468

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +  ++ +L  G A + ++  +  + + +   ++C LG +A  P+   +  FR   E+ I
Sbjct: 469 LFNLLTKLRNGQAGESDLQTIEALCELMRETSLCGLGQSAPNPVLSTLHYFRHEYEQLI 527


>gi|332883539|gb|EGK03822.1| NADH oxidoreductase, F subunit [Dysgonomonas mossii DSM 22836]
          Length = 451

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 195/411 (47%), Positives = 267/411 (64%), Gaps = 16/411 (3%)

Query: 21  SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
                 G + +V+K L+    D ++ EVK SG+RGRGGAGF  G+KWSF+ K  S +P +
Sbjct: 19  EVYRKNGGYASVEKALKTMTPDEVVEEVKTSGVRGRGGAGFPMGLKWSFIDK-KSGKPRH 77

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           LVVNADESEPGT KDR +M H PH LIEG +++S+A+ A+ ++IY+RGE++   + L+ A
Sbjct: 78  LVVNADESEPGTFKDRFLMHHIPHLLIEGAIVSSYALEANLSYIYIRGEYMWIFKILEKA 137

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           + E YA+G LG N    GY++D+ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA 
Sbjct: 138 IKEAYANGWLGKNILGTGYNLDLYVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAV 197

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT VNNVESI+ V  I+  G + Y+  G   + GTKL S SGH+  P   E  +
Sbjct: 198 SGLWGEPTVVNNVESISTVSWIINNGGAEYAKIGVGKSTGTKLMSASGHIKNPGVYEIEL 257

Query: 259 SITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR------GAIMDYDGLKE 310
            +T DE    +++CGG+      L AVIPGG SVP LP   +         ++ Y+ L +
Sbjct: 258 GLTVDEFFNSDEYCGGMLDDRP-LKAVIPGGCSVPILPPQYIFKTANGEDRLISYESLAD 316

Query: 311 ----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
                GS LG+   IV + +  I++  W  S F+ HESCGQC+PCREGTGWM +++ R+ 
Sbjct: 317 GGFVTGSSLGSGGFIVYNDTACIVRNTWNFSRFFHHESCGQCSPCREGTGWMDKILHRIE 376

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            G  ++ +IDLL+ +   IEG TIC LGDAA+WP+   I++FR   E  + 
Sbjct: 377 TGQGREEDIDLLWSIQSKIEGNTICPLGDAASWPVAAAIRHFREEFEYHVR 427


>gi|294637175|ref|ZP_06715483.1| NADH oxidoreductase, F subunit [Edwardsiella tarda ATCC 23685]
 gi|291089639|gb|EFE22200.1| NADH oxidoreductase, F subunit [Edwardsiella tarda ATCC 23685]
          Length = 448

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 169/408 (41%), Positives = 243/408 (59%), Gaps = 7/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  +   ++ L+   +D ++  VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRAKNGYQAAERALKGMAQDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE++    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLIGAYALKAYRGYIFLRGEYVAAAH 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E  A+GLLG N    G+D D+ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIEEARAAGLLGKNILGSGFDFDLFVHTGAGRYICGEETALINSLEGRRANPRAKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP I+  GA+WY G   G+  + GTKL   SG V  P
Sbjct: 202 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSQDAGTKLMGFSGRVKNP 261

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD+  + + 
Sbjct: 262 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTEAHL-DLPMDFASIGKA 319

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 320 GSRLGTALAMAVDHEVNMVSLLCNLESFFARESCGWCTPCRDGLPWGLKILRALERGEGQ 379

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I +
Sbjct: 380 PGDIETLEQLCRLLAPGHTFCAHAPGAVEPLQSAIKYFRDEFEAGIAR 427


>gi|255535800|ref|YP_003096171.1| NADH-ubiquinone oxidoreductase chain F [Flavobacteriaceae bacterium
           3519-10]
 gi|255341996|gb|ACU08109.1| NADH-ubiquinone oxidoreductase chain F [Flavobacteriaceae bacterium
           3519-10]
          Length = 467

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 211/411 (51%), Positives = 268/411 (65%), Gaps = 15/411 (3%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
                +G +D VDK L+   D I+ EVK SGLRGRGGAGF TGMKWSF+ K     P YL
Sbjct: 35  DVYRRQGGYDAVDKALKMTPDVIVEEVKTSGLRGRGGAGFPTGMKWSFLAK-PEGVPRYL 93

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           VVNADESEPGT KDR +M   PH LIEG +I+S+A+GA+ A+IY+RGE+    + L+ A+
Sbjct: 94  VVNADESEPGTFKDRYLMEFLPHLLIEGMIISSYALGANTAYIYIRGEYSWIPDILEQAI 153

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +E  A+G LG N    GYD++I VH GAGAYICGEETALLESLEGK+G PRLKPPFPA  
Sbjct: 154 NEAKAAGFLGKNILGTGYDLEIYVHRGAGAYICGEETALLESLEGKRGNPRLKPPFPAVK 213

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GL+  PT VNNVE+IA V  I+  G + Y+  G   + GTKL S  G++N P   E  M+
Sbjct: 214 GLWESPTVVNNVETIAAVVPIMNIGGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMT 273

Query: 260 ITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLK-- 309
           IT +E I   ++CGGI  G   L A IPGGSSVP +PA  +   I      M+Y+ L   
Sbjct: 274 ITVEEFIYSDEYCGGIPNG-KKLKACIPGGSSVPIVPANLLLKTINGEPRYMNYESLADG 332

Query: 310 --EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
               G+ +G+   IV+D    ++K    L+ FY HESCGQCTPCREGT WM R+++ +  
Sbjct: 333 GFATGTMMGSGGFIVLDEDQCVVKHTMSLAHFYAHESCGQCTPCREGTPWMYRILKNIET 392

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           G     +IDLL+++ + IEG TIC LGDAAAWP+   I++FR   E  ID 
Sbjct: 393 GKGTMADIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHIDN 443


>gi|294646919|ref|ZP_06724540.1| protein HymB [Bacteroides ovatus SD CC 2a]
 gi|292637864|gb|EFF56261.1| protein HymB [Bacteroides ovatus SD CC 2a]
          Length = 489

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 235/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +   +L K    +I+ +K SGLRGRGG 
Sbjct: 3   FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 62

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  SD   Y+V NADE +PG   DR IM  +PH+++E   +  ++IG+
Sbjct: 63  GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 121

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+++    GLLG +     +  DI + +GAGA++CGEETA
Sbjct: 122 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 181

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 182 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 241

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 242 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 300

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 301 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 359

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   ++++D L  + + I+   +C LG  +  P+   + NF     E + 
Sbjct: 360 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYMEHVR 419

Query: 418 QYHRC 422
               C
Sbjct: 420 D-KTC 423


>gi|22125529|ref|NP_668952.1| NADH dehydrogenase I subunit F [Yersinia pestis KIM 10]
 gi|45442151|ref|NP_993690.1| NADH dehydrogenase I subunit F [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108808038|ref|YP_651954.1| NADH dehydrogenase I subunit F [Yersinia pestis Antiqua]
 gi|108812308|ref|YP_648075.1| NADH dehydrogenase I subunit F [Yersinia pestis Nepal516]
 gi|145599241|ref|YP_001163317.1| NADH dehydrogenase I subunit F [Yersinia pestis Pestoides F]
 gi|149365543|ref|ZP_01887578.1| NADH dehydrogenase I chain F [Yersinia pestis CA88-4125]
 gi|153948766|ref|YP_001400436.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis IP
           31758]
 gi|162418531|ref|YP_001606301.1| NADH dehydrogenase I subunit F [Yersinia pestis Angola]
 gi|165925465|ref|ZP_02221297.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937656|ref|ZP_02226218.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008538|ref|ZP_02229436.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213813|ref|ZP_02239848.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399380|ref|ZP_02304904.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422281|ref|ZP_02314034.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424755|ref|ZP_02316508.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023805|ref|YP_001720310.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis YPIII]
 gi|218929637|ref|YP_002347512.1| NADH dehydrogenase I subunit F [Yersinia pestis CO92]
 gi|229838093|ref|ZP_04458252.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895292|ref|ZP_04510466.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Pestoides
           A]
 gi|229898653|ref|ZP_04513798.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902652|ref|ZP_04517769.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Nepal516]
 gi|270490166|ref|ZP_06207240.1| NADH oxidoreductase (quinone), F subunit [Yersinia pestis KIM D27]
 gi|294504365|ref|YP_003568427.1| NADH dehydrogenase I chain F [Yersinia pestis Z176003]
 gi|21958428|gb|AAM85203.1|AE013766_6 NADH dehydrogenase I chain F [Yersinia pestis KIM 10]
 gi|45437015|gb|AAS62567.1| NADH dehydrogenase I chain F [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775956|gb|ABG18475.1| NADH dehydrogenase I chain F [Yersinia pestis Nepal516]
 gi|108779951|gb|ABG14009.1| NADH dehydrogenase I chain F [Yersinia pestis Antiqua]
 gi|115348248|emb|CAL21176.1| NADH dehydrogenase I chain F [Yersinia pestis CO92]
 gi|145210937|gb|ABP40344.1| NADH dehydrogenase I chain F [Yersinia pestis Pestoides F]
 gi|149291956|gb|EDM42030.1| NADH dehydrogenase I chain F [Yersinia pestis CA88-4125]
 gi|152960261|gb|ABS47722.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis
           IP 31758]
 gi|162351346|gb|ABX85294.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis Angola]
 gi|165914406|gb|EDR33021.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922574|gb|EDR39725.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992920|gb|EDR45221.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204987|gb|EDR49467.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958787|gb|EDR55808.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051884|gb|EDR63292.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056637|gb|EDR66406.1| NADH-quinone oxidoreductase, F subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750339|gb|ACA67857.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|229680099|gb|EEO76198.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Nepal516]
 gi|229688201|gb|EEO80272.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694459|gb|EEO84506.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701778|gb|EEO89803.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis Pestoides
           A]
 gi|262362646|gb|ACY59367.1| NADH dehydrogenase I chain F [Yersinia pestis D106004]
 gi|262366275|gb|ACY62832.1| NADH dehydrogenase I chain F [Yersinia pestis D182038]
 gi|270338670|gb|EFA49447.1| NADH oxidoreductase (quinone), F subunit [Yersinia pestis KIM D27]
 gi|294354824|gb|ADE65165.1| NADH dehydrogenase I chain F [Yersinia pestis Z176003]
 gi|320014611|gb|ADV98182.1| NADH:ubiquinone oxidoreductase, chain F [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 461

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      ++N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 29  QPVWLDEYRSKNGYAGAEKALKGMAPTDVVNVVKDAGLKGRGGAGFSTGLKWSLMPKDDS 88

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 89  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 148

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 149 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 208

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP I+  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 209 PFPASSGVWGKPTCVNNVETLCNVPAIIEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 268

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 269 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 326

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 327 GSRLGTALAMAVDHEIGMVSLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERGEGQ 386

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 387 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGI 432


>gi|317048935|ref|YP_004116583.1| NADH-quinone oxidoreductase subunit F [Pantoea sp. At-9b]
 gi|316950552|gb|ADU70027.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. At-9b]
          Length = 448

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 163/404 (40%), Positives = 235/404 (58%), Gaps = 5/404 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   + +  S+  +   +K L+   +D I+  VK SGL+GRGGAGF+TG+KWS MPK  S
Sbjct: 24  QPVWIDEYRSKNGYVGAEKALKGMSQDEIVATVKDSGLKGRGGAGFNTGLKWSLMPKDES 83

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 84  MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAA 143

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +G +G N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 144 NLRKAIAEATEAGFIGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 203

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE+++ VP I   G  WY    +  + GTK+   SG V  P  
Sbjct: 204 PFPASAGVWGKPTCVNNVETLSNVPAIFLNGVEWYKNISKSEDTGTKMMGFSGRVKNPGV 263

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L   Q     M++  + + GS
Sbjct: 264 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLT-DQHLDLPMEFASIGKAGS 321

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  
Sbjct: 322 RLGTALAMAVDHEISMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKQGQPG 381

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 382 DIETLQQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 425


>gi|292488839|ref|YP_003531726.1| NADH dehydrogenase I subunit F [Erwinia amylovora CFBP1430]
 gi|292899990|ref|YP_003539359.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC 49946]
 gi|291199838|emb|CBJ46962.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC 49946]
 gi|291554273|emb|CBA21591.1| NADH dehydrogenase I chain F [Erwinia amylovora CFBP1430]
 gi|312172999|emb|CBX81254.1| NADH dehydrogenase I chain F [Erwinia amylovora ATCC BAA-2158]
          Length = 446

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 168/404 (41%), Positives = 241/404 (59%), Gaps = 5/404 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+    D I++ VK SGL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVFLDEYRSKNGYAGAEKALKTLTPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E  A+GLLG N    G+D +++VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATAAGLLGKNILGTGFDFELVVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE+++ VP IL  G  WY      ++ GTK+   SG V  P  
Sbjct: 202 PFPASAGVWGKPTCVNNVETLSNVPAILANGVDWYKSISNSDDAGTKMMGFSGRVKNPGV 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E++ GG+R G     A  PGG+    L   Q     M++  + + GS
Sbjct: 262 WELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLT-EQHLDLPMEFASIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERKEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  +
Sbjct: 380 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGM 423


>gi|51596902|ref|YP_071093.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis IP
           32953]
 gi|186895983|ref|YP_001873095.1| NADH dehydrogenase I subunit F [Yersinia pseudotuberculosis PB1/+]
 gi|51590184|emb|CAH21821.1| NADH dehydrogenase I chain F [Yersinia pseudotuberculosis IP 32953]
 gi|186699009|gb|ACC89638.1| NADH-quinone oxidoreductase, F subunit [Yersinia pseudotuberculosis
           PB1/+]
          Length = 461

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      ++N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 29  QPVWLDEYRSKNGYAGAEKALKGMVPTDVVNVVKDAGLKGRGGAGFSTGLKWSLMPKDDS 88

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 89  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 148

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 149 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 208

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP I+  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 209 PFPASSGVWGKPTCVNNVETLCNVPAIIEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 268

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 269 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 326

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 327 GSRLGTALAMAVDHEIGMVSLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERGEGQ 386

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 387 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGI 432


>gi|126434143|ref|YP_001069834.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. JLS]
 gi|126233943|gb|ABN97343.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. JLS]
          Length = 438

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 205/414 (49%), Positives = 267/414 (64%), Gaps = 9/414 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L      G +  +++ L    D +I  +K SGLRGRGGAGF TG KWSF+P+    
Sbjct: 16  ESWTLETYRRHGGYRALEQALATAPDDVITTIKDSGLRGRGGAGFPTGTKWSFIPQGDEG 75

Query: 76  R---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
               PHYLV+NADESEPGTCKD  ++   PH L+EG +IA++AI AH AFIYVRGE +  
Sbjct: 76  PAAKPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRAHHAFIYVRGEVVPV 135

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQAAV E Y +G LG++    G+D+D+IVH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 136 LRRLQAAVAEAYDAGYLGTDIRGSGFDLDLIVHAGAGAYICGEETALLDSLEGRRGQPRL 195

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLY CPT VNNVESIA VP IL  G  W+   G E + G  L+S+SGHV  P
Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLGGIDWFRSMGSEKSPGFTLYSLSGHVTRP 255

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+E + GG+R G + L    PGGSS P L    +    +DY+G+  +
Sbjct: 256 GQYEAPLGITLRELLE-YAGGVRAGHE-LKFWTPGGSSTPLLTGEHL-DVPLDYEGMASV 312

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++  RL  G A 
Sbjct: 313 GSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLESGDAT 372

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           + ++D L ++S  I G++ CALGD AA PI   IK FR      +     C F 
Sbjct: 373 EADVDKLLDISDTILGKSFCALGDGAASPIISSIKYFRDEYLAHLGNG--CPFD 424


>gi|256827981|ref|YP_003156709.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028]
 gi|256577157|gb|ACU88293.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028]
          Length = 612

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 155/417 (37%), Positives = 237/417 (56%), Gaps = 6/417 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
             N   +  +++  +++   +  + K L +   + II E++ SGLRGRGGAGF TG+KW 
Sbjct: 137 LRNKGRIDPENIGHAIAHDGYQGLAKALFDIAPEGIIEEMRLSGLRGRGGAGFPTGLKWK 196

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F      D   Y++ NADE +PG   DR I+  +PH ++EG +IA+ AIGAH  +IY R 
Sbjct: 197 FAAASPGD-VKYVLCNADEGDPGAFMDRSILESDPHAVLEGMIIAAVAIGAHQGYIYCRS 255

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    + L  A+ +    GLLG +     +  D+ ++ GAGA++CGEETAL+ S+EG++
Sbjct: 256 EYPLAIQRLTLAIGQARELGLLGESILGSDFSFDLEIYQGAGAFVCGEETALMRSIEGRR 315

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PR +PPFPA  GL+G PT +NNVE++A V  I+R G   Y+G G E + GTK+F++SG
Sbjct: 316 GMPRPRPPFPAQQGLWGRPTVLNNVETLANVGRIIRLGGGHYAGIGTEGSTGTKVFALSG 375

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            VN    VE  M      L+    GG+  G     AV  GG S   +PA  +    +DY+
Sbjct: 376 DVNNIGLVEVDMGTPLSVLVNDIGGGVP-GKRACKAVQLGGPSGGSIPA-HLLDTPVDYE 433

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + G+ +G+  VIVM+  T ++        F + ESCG+CTPCREGT   + ++ R+ 
Sbjct: 434 AIAKAGAIMGSGGVIVMNDRTCMVDMARFFMDFIQDESCGKCTPCREGTRRQLEILTRIC 493

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           +G     ++  L +++  I   ++C LG  A+ PI   +++FR   E  I    RC 
Sbjct: 494 EGRGAPGDLRTLEDLAAVITDASLCGLGQTASNPILSALRHFRDEFEAHIMD-KRCP 549


>gi|317123850|ref|YP_004097962.1| NADH dehydrogenase subunit F [Intrasporangium calvum DSM 43043]
 gi|315587938|gb|ADU47235.1| NADH dehydrogenase subunit F [Intrasporangium calvum DSM 43043]
          Length = 443

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 194/403 (48%), Positives = 248/403 (61%), Gaps = 5/403 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L+       +  + K L+     ++  VK S +RGRGGAGF TG+KWSFM      
Sbjct: 17  ESWTLATYERNDGYRALRKALDMAPADVLGAVKDSSIRGRGGAGFPTGLKWSFMS-PPDG 75

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P YLVVNADESEPGTCKD  +M   PH LIEG +I+S+AIG   AFIY+RGE +     
Sbjct: 76  GPRYLVVNADESEPGTCKDIPLMMANPHALIEGAIISSYAIGCEHAFIYLRGEVVHVYRR 135

Query: 136 LQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV+E  A+G LG +    G  V+I VH GAGAYICGEETALL+SLEG++GQPRLKPP
Sbjct: 136 LLRAVEEARAAGYLGDDVGGKGVKVNITVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 195

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FP   GLY  PT+VNNVESIA VP I+ RG  W+ G G E + G  +FS+SGHV +P   
Sbjct: 196 FPGAAGLYARPTSVNNVESIASVPGIILRGPDWFKGMGTEKSTGFGIFSLSGHVTHPGQF 255

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  ELIE   G        L    PGGSS P      +    +D+D +   GS 
Sbjct: 256 EAPLGITMRELIELAGGM--RQGHRLKFWTPGGSSTPIFTEEHL-DVPLDFDSVAAAGSM 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ V D +  +++A+ R + FY HESCG+CTPCREGT W+ ++M R+  G   + +
Sbjct: 313 LGTRALQVFDETVSVVRAVSRWTDFYAHESCGKCTPCREGTWWLRQIMNRIENGKGTQDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ID L ++  NI GR+ CALGDAA  PI   +K FR   E  + 
Sbjct: 373 IDKLVDICDNILGRSFCALGDAATSPITSAVKYFREEFEAGMH 415


>gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3]
 gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3]
          Length = 596

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 226/426 (53%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  + K L E   + +I E+  SGLRGRGG 
Sbjct: 110 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGKALVEMTPEEVIKEIMDSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    KV +    Y+V NADE +PG   DR I+  +PH+++E   I  +  GA
Sbjct: 170 GFPTGLKWQITRKVQAP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    E L+ A+ +    GLLG N     +  DI + +GAGA++CGEETA
Sbjct: 229 SKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIFGTDFSFDIEIRYGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+ A +P IL RGA W+S  G E ++
Sbjct: 289 LIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVETYANIPVILLRGAKWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E +    GG         AV  GG S  CL    
Sbjct: 349 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPSGGCLTEKH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   GS +G+  +IVMD    ++        F   ESCG+C PCR G   
Sbjct: 408 L-DLPIDYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++++  G   + ++  L  ++  I+   +C LG  +  P+   + NF       + 
Sbjct: 467 LHEILQKITSGNGTEEDLTRLRNLAMVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVR 526

Query: 418 QYHRCN 423
           + HRC 
Sbjct: 527 E-HRCP 531


>gi|158317831|ref|YP_001510339.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EAN1pec]
 gi|158113236|gb|ABW15433.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EAN1pec]
          Length = 447

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 200/407 (49%), Positives = 267/407 (65%), Gaps = 6/407 (1%)

Query: 8   IFTNLY-GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T  +   +  +L+       +  + + L +  D +I  VK SGLRGRGGAGF TGMKW
Sbjct: 6   VLTRRWTAPESWTLATYERLDGYQGLRRALAQSPDDLIKLVKDSGLRGRGGAGFPTGMKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F+P+    +PHYLV+NADE EPGTCKD  +M+ +PH+LIEG VIA++A+ A+ AFIY+R
Sbjct: 66  GFIPQ-GDGKPHYLVINADEGEPGTCKDAPLMKADPHSLIEGIVIAAYAVRANRAFIYLR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE I     L+AAV E Y +G LG +    G+D+D++VH GAGAYICGEETALL+SLEG+
Sbjct: 125 GELIHAGRRLRAAVAEAYRAGYLGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGR 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +GQPRL+PPFPA  GLY  PT VNNVE+IA VP I+  G  W+   GRE   G K++S+S
Sbjct: 185 RGQPRLRPPFPATHGLYASPTVVNNVETIATVPFIVNYGVDWFRSMGRERAPGPKIYSLS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV +P   E  M  T  EL++   G +      L A  PGGSS P L A  +    +D+
Sbjct: 245 GHVTHPGQYEAPMGTTLRELLDMAGGVLG--GRKLKAWTPGGSSTPLLTADHL-DVPLDF 301

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G++E GS LGTAA+++MD S D++K + RL+ FY HESCG+CTPCREGT WM++++ R+
Sbjct: 302 EGVQEAGSLLGTAALMIMDDSVDMLKIVRRLTQFYAHESCGKCTPCREGTTWMVQILSRM 361

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +G     ++D L +   NI GR  CAL D A  PI   IK FR   
Sbjct: 362 ERGQGDPDDVDTLVDACDNIFGRAFCALADGATSPIVSGIKFFRNEF 408


>gi|108798545|ref|YP_638742.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. MCS]
 gi|119867645|ref|YP_937597.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. KMS]
 gi|108768964|gb|ABG07686.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. MCS]
 gi|119693734|gb|ABL90807.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium sp. KMS]
          Length = 438

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 205/414 (49%), Positives = 267/414 (64%), Gaps = 9/414 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L      G +  +++ L    D +I  +K SGLRGRGGAGF TG KWSF+P+    
Sbjct: 16  ESWTLETYRRHGGYRALEQALGTAPDDVITTIKDSGLRGRGGAGFPTGTKWSFIPQGDEG 75

Query: 76  R---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
               PHYLV+NADESEPGTCKD  ++   PH L+EG +IA++AI AH AFIYVRGE +  
Sbjct: 76  PAAKPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRAHHAFIYVRGEVVPV 135

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQAAV E Y +G LG++    G+D+D+IVH GAGAYICGEETALL+SLEG++GQPRL
Sbjct: 136 LRRLQAAVAEAYEAGYLGTDIRGSGFDLDLIVHAGAGAYICGEETALLDSLEGRRGQPRL 195

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GLY CPT VNNVESIA VP IL  G  W+   G E + G  L+S+SGHV  P
Sbjct: 196 RPPFPAVAGLYACPTVVNNVESIASVPPILLGGIDWFRSMGSEKSPGFTLYSLSGHVTRP 255

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  + IT  EL+E + GG+R G + L    PGGSS P L    +    +DY+G+  +
Sbjct: 256 GQYEAPLGITLRELLE-YAGGVRAGHE-LKFWTPGGSSTPLLTGEHL-DVPLDYEGMASV 312

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++  RL  G A 
Sbjct: 313 GSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLESGEAT 372

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           + ++D L ++S  I G++ CALGD AA PI   IK FR      +     C F 
Sbjct: 373 EADVDKLLDISDTILGKSFCALGDGAASPIISSIKYFRDEYLAHLGNG--CPFD 424


>gi|288818981|ref|YP_003433329.1| NAD-dependent formate dehydrogenase beta subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288788381|dbj|BAI70128.1| NAD-dependent formate dehydrogenase beta subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308752566|gb|ADO46049.1| formate dehydrogenase beta subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 521

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 156/413 (37%), Positives = 229/413 (55%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +   S+ + +    +  + K L+   + IINE+K SGLRGRGGAGF
Sbjct: 102 LKRQVRLTFERVGLIDPLSIDEYIKYKGFLALKKALDMKPEDIINEIKRSGLRGRGGAGF 161

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + K  S+   Y+V NADE + GT  DR IM  +P  LIE   IA  A+GA  
Sbjct: 162 PTGIKWETVLKTPSE-EKYIVCNADEGDSGTFSDRMIMECDPFLLIEAMTIAGLAVGARR 220

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+   +E LQ A++     G LG +    G   +I ++ GAGAY+CGEETALL
Sbjct: 221 GYIYLRSEYPLAKEVLQEAINIACDRGYLGDDIMGSGKSFEIELYVGAGAYVCGEETALL 280

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R +PP PA  GL+G PT VNNV ++A VP I+R G   Y+ +G + ++GT
Sbjct: 281 ESLEGKRGIVRPRPPVPAVSGLWGKPTIVNNVVTLATVPWIIREGGENYASYGTDRSKGT 340

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               +SG+V     VE     T  ELI    GG       + AV  GG     LP   M 
Sbjct: 341 LPVQLSGNVKRGGLVEIPFGTTLRELIYDFGGGT-YSGRPVKAVQVGGPLGAYLPES-ML 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+  +++G  LG   ++V D + D+   +     F   ESCG+CTPCR G+   +
Sbjct: 399 DIPIDYEAFQKVGGILGHGGIVVFDDTVDLWYMMRFAMEFCARESCGKCTPCRIGSQRGV 458

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+++L+K     + + LL ++   +   ++C LG  A +P+  +++NF   +
Sbjct: 459 EVIDKLMKDGTNGKLLTLLEDLMDVMMHTSLCGLGGMAPYPVLSILRNFSEDL 511


>gi|13366092|dbj|BAB39382.1| hydrogenase diaphorase large subunit [Anabaena variabilis]
          Length = 541

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 138/409 (33%), Positives = 239/409 (58%), Gaps = 6/409 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N   +  + +   ++   + ++  +L E   + +++ +  SGLRGRGGAG+ TG+KW
Sbjct: 128 VLENSGKVDPERIQSYIAAQGYRSLYHVLREMTANEVVDTITRSGLRGRGGAGYPTGLKW 187

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           + + K   +   +++ NADE +PG   DR ++  +PH ++EG  IA++A+     +IY+R
Sbjct: 188 ATVAKAQGE-RKFVICNADEGDPGAFMDRSVLESDPHRVLEGMAIAAYAVR-KQGYIYIR 245

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+      LQ A+ +    G+LG+      +D  I +  GAGAY+CGEETAL+ S+EGK
Sbjct: 246 AEYPVAINRLQTAIRQAQRLGILGTQIFDSRFDFKIDIRIGAGAYVCGEETALMASIEGK 305

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G P  +PP+PA  GL+G PT +NNVE+ A V  I+R+GA W++  G E ++GTK+F+++
Sbjct: 306 RGTPHPRPPYPAESGLWGYPTLINNVETYANVAPIIRKGAEWFASIGTEKSKGTKVFALA 365

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G +     +E  M  +  +++E   GG+      + AV  GG S  C+PA     +I+DY
Sbjct: 366 GKIRNTGLIEVPMGTSLKQIVEAMGGGVPDNG-VVKAVQTGGPSGGCIPASA-FESIVDY 423

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L ++GS +G+  +IVMD +T+++        F   ESCG+C PCR GT  + +++ ++
Sbjct: 424 ESLTQLGSMMGSGGMIVMDETTNMVDVARFFMEFCMDESCGKCIPCRVGTVQLHKLLTKI 483

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            +G A   +++LL E+   ++  ++C LG +A  P+   ++ FR     
Sbjct: 484 SQGKASLADLELLEELCDMVKNTSLCGLGQSAPNPVFSTLRYFRDEYLA 532


>gi|159899603|ref|YP_001545850.1| NADH-quinone oxidoreductase subunit F [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892642|gb|ABX05722.1| NADH-quinone oxidoreductase, F subunit [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 422

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 198/415 (47%), Positives = 263/415 (63%), Gaps = 5/415 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  N      + L   ++ G +    + L       II+EVK SGLRGRGGAGF TG+KW
Sbjct: 11  VMRNREIENIRDLDVYLASGGYAMAKQALTSMTPAAIIDEVKKSGLRGRGGAGFPTGVKW 70

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+PK  +  P YLVVNADESEPGT  + +I+   PH L+EG VI++FAIGA+ A+IY+R
Sbjct: 71  SFVPKELN--PKYLVVNADESEPGTFNNHEIIDENPHQLLEGIVISAFAIGANVAYIYIR 128

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF      L+  + E  A GL+G N    GYDV+I VH GAGAYICGEETALLESLEGK
Sbjct: 129 GEFAYGARFLEQKIAEARARGLIGKNLFGTGYDVEIYVHRGAGAYICGEETALLESLEGK 188

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            GQPRLKPPFPA  GLY  PT VNNVE++  VP I+ +GA W+  FG E + GTK  SIS
Sbjct: 189 IGQPRLKPPFPAVAGLYAKPTVVNNVETLTNVPRIIEKGADWFRSFGTEKSPGTKAVSIS 248

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  + IT  E I    GG+R     L  +IPGG+S   L   Q     M +
Sbjct: 249 GHVKKPGNYEIPLGITIREFIFDWAGGMRDPNLPLKFIIPGGASSNWLT-EQHLDLPMTW 307

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D +   G+ LG+ A++V+D S  +++A  ++  F+KHESCG+C+PCREGT ++++V ER+
Sbjct: 308 DDMAAAGTMLGSGAMVVLDTSVPVVRAALKVDEFFKHESCGKCSPCREGTHFLVKVWERI 367

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +G  +  +I+LL +V K + G+  C LGD++   +   IK FRP ++  ID  H
Sbjct: 368 DEGHGRVGDIELLADVGKQMLGKCFCPLGDSSVSAVNSAIKFFRPELDAAIDAQH 422


>gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
 gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
          Length = 624

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 237/426 (55%), Gaps = 8/426 (1%)

Query: 1   MLTDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
              +Q   I   +   + K + D M RG + ++ K+L     + +I  VKASGLRGRGG 
Sbjct: 139 FFKNQTFYIMEGIGTSECKKIEDYMGRGGYKSLLKVLSSMKPEEVIETVKASGLRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K   +   ++V NADE +PG   +R ++  +PH+++EG +IA++ +GA
Sbjct: 199 GFPTGLKWEFTYKAKGE-KKFVVCNADEGDPGAFMNRTLLERDPHSVLEGMIIAAYTVGA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              + Y+R E+    E    A+++    GLLG N    G+  D+ V  GAGA++CGEETA
Sbjct: 258 QKGYAYIRAEYPIAVEMFNKAINDAKKMGLLGENILGTGFSFDLEVKEGAGAFVCGEETA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL S+EGK+G PR +PPFPA  GL+G PT +NNVE+ A +  I+R G   Y   G E + 
Sbjct: 318 LLASIEGKRGVPRPRPPFPAQKGLWGYPTLINNVETYANIAKIIRDGVENYRKRGVEKSP 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G +     +E     T   ++E  CGG       L A+  GG S  CLP   
Sbjct: 378 GTKMFSVTGPLKLTGIIEIEFGTTIRYVLENICGGT-VEGKKLKAIQIGGPSGACLPEKY 436

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DYD LK + + +G+  ++ +   + +++       F K ESCG+C PCREGT  
Sbjct: 437 -FDLPLDYDTLKSVDAMVGSGGIVAITEDSCMVEVARFFLDFTKRESCGKCVPCREGTMQ 495

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
              ++E+  +G A   +++ L  ++K ++  ++C LG  A  PI   +K+FR    E I+
Sbjct: 496 SYTILEKFTQGKATHEDLENLESLAKIVKTASLCGLGKTAPNPILSTLKHFRDEYMEHIN 555

Query: 418 QYHRCN 423
              +C 
Sbjct: 556 --GKCP 559


>gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
 gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
          Length = 596

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 226/426 (53%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  + K L E   + +I E+  SGLRGRGG 
Sbjct: 110 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGKALVEMTPEEVIKEIMDSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    KV +    Y+V NADE +PG   DR I+  +PH+++E   I  +  GA
Sbjct: 170 GFPTGLKWQITRKVQAP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    E L+ A+ +    GLLG N     +  DI + +GAGA++CGEETA
Sbjct: 229 SKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGKNIFGTDFSFDIEIRYGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+ A +P IL RGA W+S  G E ++
Sbjct: 289 LIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVETYANIPVILLRGAKWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E +    GG         AV  GG S  CL    
Sbjct: 349 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPSGGCLTEKH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   GS +G+  +IVMD    ++        F   ESCG+C PCR G   
Sbjct: 408 L-DLPIDYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++++  G   + ++  L  ++  I+   +C LG  +  P+   + NF       + 
Sbjct: 467 LHEILQKITSGNGAEEDLTRLRNLAMVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVR 526

Query: 418 QYHRCN 423
           + HRC 
Sbjct: 527 E-HRCP 531


>gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
          Length = 596

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 227/426 (53%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  + K L E   + +I E+  SGLRGRGG 
Sbjct: 110 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGKALVEMTPEEVIKEIMDSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    KV +    Y+V NADE +PG   DR I+  +PH+++E   I  +  GA
Sbjct: 170 GFPTGLKWQITRKVQAP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +   +Y+R E+    E L+ A+ +    GLLG N     +  DI + +GAGA++CGEETA
Sbjct: 229 NKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIFGTDFSFDIEIRYGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+ A +P IL RGA W+S  G E ++
Sbjct: 289 LIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVETYANIPVILLRGAKWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E +    GG         AV  GG S  CL    
Sbjct: 349 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPSGGCLTEKH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   GS +G+  +IVMD    ++        F   ESCG+C PCR G   
Sbjct: 408 L-DLPIDYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++++  G   + ++  L  ++  I+   +C LG  +  P+   + NF       + 
Sbjct: 467 LHEILQKITSGNGTEEDLIRLRNLAMVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVR 526

Query: 418 QYHRCN 423
           + HRC 
Sbjct: 527 E-HRCP 531


>gi|302523882|ref|ZP_07276224.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. AA4]
 gi|302432777|gb|EFL04593.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. AA4]
          Length = 427

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/407 (49%), Positives = 260/407 (63%), Gaps = 5/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +   +    +   +    K L    + ++  VK SGLRGRGGAGF  G+KWSFMP    D
Sbjct: 17  ESWRIETYEALEGYTAARKALAATPEQLVQVVKDSGLRGRGGAGFPAGVKWSFMPPNE-D 75

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLV+NADE EPGTCKD  +M  +PH+LIEGC+IAS+A+ +H  FIYVRGE +     
Sbjct: 76  KPHYLVINADEGEPGTCKDIPLMMADPHSLIEGCIIASYAMRSHHCFIYVRGEALHCIRR 135

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L AA  E YA G LG N    G+D+++ VH GAGAYICGEETALL+SLEG++GQPRLKPP
Sbjct: 136 LNAAAREAYAKGYLGKNIFGSGWDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 195

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PTTVNNVE+IA    I+  G+SW+   GRE + G K++SISGHV  P   
Sbjct: 196 FPAAAGLYAAPTTVNNVETIASASYIINAGSSWFREMGREKSPGPKIYSISGHVEKPGQY 255

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +  T  EL+E   GG++ G   L    PGGSS P   A  +    +D++G  E GS 
Sbjct: 256 ECPLGTTLRELLE-LAGGMKDGIP-LKFWTPGGSSTPMFTAEHL-DVPLDFEGAAEAGSM 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT AV V + +  +  A+ + + FY+HESCG+CTPCREGT W+ +++ER+V+G   + +
Sbjct: 313 LGTTAVQVFNETVSVPWAVMKWTQFYEHESCGKCTPCREGTYWLAQILERMVEGHGTEED 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ID L +V  NI GR+ CALGD A  PIQ  IK FR       +   R
Sbjct: 373 IDTLLDVCDNIFGRSFCALGDGAVSPIQSGIKYFRDEFLALCESNKR 419


>gi|269139726|ref|YP_003296427.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Edwardsiella tarda EIB202]
 gi|267985387|gb|ACY85216.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Edwardsiella tarda EIB202]
 gi|304559593|gb|ADM42257.1| NADH-ubiquinone oxidoreductase chain F [Edwardsiella tarda FL6-60]
          Length = 448

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 171/408 (41%), Positives = 244/408 (59%), Gaps = 7/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  +   ++ L+   +D ++  VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRAKNGYHAAERALKGMAQDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE++   E
Sbjct: 82  MNVRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLIGAYALKAYRGYIFLRGEYVTAAE 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+DE  A+GLLG N    G+D D+ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIDEARAAGLLGKNIFGSGFDFDLFVHTGAGRYICGEETALINSLEGRRANPRAKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G +G PT VNNVE++  VP I+  GA+WY G   G+  + GTKL   SG V  P
Sbjct: 202 PFPASAGAWGKPTCVNNVETLCNVPAIVEHGAAWYQGLSAGKSQDAGTKLMGFSGRVKNP 261

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD+  + + 
Sbjct: 262 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTEAHL-DLPMDFASIGKA 319

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 320 GSRLGTALAMAVDHEINMVSLLCNLESFFARESCGWCTPCRDGLPWGLKILRALERGEGQ 379

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I +
Sbjct: 380 PGDIETLEQLCRLLAPGHTFCAHAPGAVEPLQSAIKYFRDEFEAGIAR 427


>gi|284992920|ref|YP_003411474.1| NADH-quinone oxidoreductase subunit F [Geodermatophilus obscurus
           DSM 43160]
 gi|284066165|gb|ADB77103.1| NADH-quinone oxidoreductase, F subunit [Geodermatophilus obscurus
           DSM 43160]
          Length = 442

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 196/408 (48%), Positives = 250/408 (61%), Gaps = 12/408 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q   LS       +  +   L    D ++  VK SGLRGRGGAGF TGMKWSF+P+    
Sbjct: 15  QSWRLSTYERLDGYTALRTALSMTPDELVGMVKDSGLRGRGGAGFPTGMKWSFIPQPKPG 74

Query: 76  R--------PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                    P YLVVNADE EPGTCKD  +M  +PH+L+EG VIAS+AI +H A IYVRG
Sbjct: 75  ETPTGPAALPKYLVVNADEGEPGTCKDLPLMMADPHSLVEGVVIASYAIRSHLAVIYVRG 134

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E +     L  AV E Y +G LG++    GYD+++IVH GAGAYICGEETALL+SLEG +
Sbjct: 135 EAVHAHRRLVNAVREAYEAGYLGTDILGSGYDLELIVHAGAGAYICGEETALLDSLEGYR 194

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPRLKPPFPA  GLYG PT +NNVE++A VP ++R G+ W+  FG E + G K++S+SG
Sbjct: 195 GQPRLKPPFPAVAGLYGAPTVINNVETLASVPFVVRGGSDWFKEFGPERSPGPKIYSLSG 254

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  M  T  EL+E   G        L    PGGSS P      +    +D+D
Sbjct: 255 RVVRPGQYEAPMGTTMRELLEMAGG--VRPGHELKFWTPGGSSTPYFTPEHL-DVPLDFD 311

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS LGT A++V D +  I++A  R + FY HESCG+CTPCREGT W+++V++RLV
Sbjct: 312 SVAAAGSMLGTTALMVFDETDSIVEATLRFTEFYAHESCGKCTPCREGTYWLVQVLQRLV 371

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            G     ++DLL +   NI GR+ CALGD A   I   +K FR     
Sbjct: 372 DGRGTAADLDLLTDTCDNILGRSFCALGDGATSCISSSLKYFRDDYVA 419


>gi|213581185|ref|ZP_03363011.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 420

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 166/401 (41%), Positives = 234/401 (58%), Gaps = 5/401 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+++VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E        E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTIAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E
Sbjct: 380 DIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFE 420


>gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
 gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
          Length = 596

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 150/426 (35%), Positives = 226/426 (53%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  + K L E   + +I E+  SGLRGRGG 
Sbjct: 110 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGKALVEMTPEEVIKEIMDSGLRGRGGG 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    KV +    Y+V NADE +PG   DR I+  +PH+++E   I  +  GA
Sbjct: 170 GFPTGLKWQITRKVQAP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    E L+ A+ +    GLLG N     +  DI + +GAGA++CGEETA
Sbjct: 229 SKGLVYIRAEYPLAVERLKIAIRQAKEYGLLGENIFGTDFSFDIEIRYGAGAFVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+ A +P IL RGA W+S  G E ++
Sbjct: 289 LIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVETYANIPVILLRGAKWFSSIGTEKSK 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G VN    +E  M  T  E +    GG         AV  GG S  CL    
Sbjct: 349 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPSGGCLTEKH 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L   GS +G+  +IVMD    ++        F   ESCG+C PCR G   
Sbjct: 408 L-DLPIDYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKR 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++++  G   + ++  L  ++  I+   +C LG  +  P+   + NF       + 
Sbjct: 467 LHEILQKITSGNGAEEDLTRLRNLAMVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVR 526

Query: 418 QYHRCN 423
           + HRC 
Sbjct: 527 E-HRCP 531


>gi|82702146|ref|YP_411712.1| NADH-quinone oxidoreductase, F subunit [Nitrosospira multiformis
           ATCC 25196]
 gi|82410211|gb|ABB74320.1| NADH dehydrogenase subunit F [Nitrosospira multiformis ATCC 25196]
          Length = 425

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 164/414 (39%), Positives = 240/414 (57%), Gaps = 6/414 (1%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72
           G +   L+     G +  + K L      I   VK S LRGRGGAGF T  KWSF+P   
Sbjct: 12  GREPPDLAQYEKAGGYGALRKALGMAPAEIQAAVKESNLRGRGGAGFPTAQKWSFVPMGD 71

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            + RP YLV NADE EPGT KDR ++  +PH LIEG +I+++AI A  A++++R  +   
Sbjct: 72  DAPRPKYLVCNADEMEPGTFKDRMLLEGDPHQLIEGIIISAYAIQADVAYVFLRWAYKLA 131

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              ++ A+ E Y  G LG N     Y +++ +H  AG YICGEETALL +LEGK+  PR 
Sbjct: 132 ARRVERAIVEAYRHGYLGKNILGSAYSLEMHLHVSAGRYICGEETALLNALEGKRANPRA 191

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPP+P   GL+G PT VN+VE++  VP I+++GA W+    R ++ GTKL+  SG V  P
Sbjct: 192 KPPYPQVSGLWGKPTIVNSVETLCNVPHIVKQGAEWFRSLSRSDDGGTKLYGASGRVKNP 251

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M     E++E+H GG+R G+     V+PGG+S   + A  +    MD+D +++ 
Sbjct: 252 GLWELPMGTPLREILEEHAGGMRDGY-QFRGVLPGGASTDFVTAEHL-DVAMDFDSVQKA 309

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGT  +I++D  T  +  +  L  F+  ESCG CTPC  G  W+ ++++ + +G  +
Sbjct: 310 GSRLGTGTMIILDDKTCPVGMLLNLEHFFAQESCGWCTPCWSGLSWIEQILQDMEEGRGR 369

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
             +++LL   ++ +  G T CAL   AA P+Q  +K FR   E  I +  RC +
Sbjct: 370 ASDLELLESHTRLLGPGHTFCALAPGAAEPLQSGLKYFRDDFERHIHE-KRCPW 422


>gi|256380660|ref|YP_003104320.1| NADH-quinone oxidoreductase, F subunit [Actinosynnema mirum DSM
           43827]
 gi|255924963|gb|ACU40474.1| NADH-quinone oxidoreductase, F subunit [Actinosynnema mirum DSM
           43827]
          Length = 431

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 192/399 (48%), Positives = 253/399 (63%), Gaps = 5/399 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             +L        +  + K L+   D +I + K SGLRGRGGAGF TGMKW F+P+    +
Sbjct: 18  SWTLKTYEQLEGYTALRKALKVHPDQLIQQCKDSGLRGRGGAGFPTGMKWGFIPQ-GDGK 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           PHYLV+NADE EPGTCKD  +M  +PH+L+EG +I S+AI A+ A IYVRGE +     L
Sbjct: 77  PHYLVINADEGEPGTCKDIPLMMADPHSLVEGIIITSYAIRANFAAIYVRGEVLHVIRRL 136

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            AAV E Y +G LG +    G+D+D++VH GAGAYICGEETALL+SLEG++GQPRLKPPF
Sbjct: 137 NAAVREAYEAGYLGKDILGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQPRLKPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT VNNVE+IA VP ++  G+ W+   GR+ + G K++S+SGHV  P   E
Sbjct: 197 PATAGLYASPTVVNNVETIASVPYVVNGGSDWFRTMGRDRSPGPKIYSLSGHVERPGQYE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T   L+E   G   G    L    PGGSS P   A  +    +D++G+ E GS L
Sbjct: 257 APMGTTLRTLLEMAGGMKDGVP--LKFWTPGGSSTPLFTAEHL-DVPLDFEGVAEAGSML 313

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT AV + + +  +  A+ + + FYKHESCG+CTPCREGT W+ + ++R+V+G     +I
Sbjct: 314 GTTAVQIFNETVSVPWAVMKWTEFYKHESCGKCTPCREGTYWLTKTLQRMVRGEGTPSDI 373

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           D L +V  NI GR+ CALGD A  PI   IK F+     
Sbjct: 374 DTLLDVCSNILGRSFCALGDGAVSPITSGIKYFKDEFLA 412


>gi|157371541|ref|YP_001479530.1| NADH dehydrogenase I subunit F [Serratia proteamaculans 568]
 gi|157323305|gb|ABV42402.1| NADH-quinone oxidoreductase, F subunit [Serratia proteamaculans
           568]
          Length = 450

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 174/415 (41%), Positives = 242/415 (58%), Gaps = 7/415 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K ++    D I+  VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDEYRSKNGYAGAEKAIKGLAPDEIVTLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +G LG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 HLRRAIAEATEAGYLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 203 PFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYKGISAGKSNDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 263 GVWELPFGTTAREILEDYAGGMRDGL-RFKAWQPGGAGTDFLTADHL-DLPMDFESIGKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L  G  Q
Sbjct: 321 GSRLGTALAMAVDHEIGMVPLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALENGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +I+ L ++ +++  G+T CA    A  P+Q  IK FR   E  I   H  N  
Sbjct: 381 PGDIETLEQLCRSLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKVKHFSNAH 435


>gi|270262810|ref|ZP_06191081.1| NADH-quinone oxidoreductase subunit F [Serratia odorifera 4Rx13]
 gi|270043494|gb|EFA16587.1| NADH-quinone oxidoreductase subunit F [Serratia odorifera 4Rx13]
          Length = 450

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 176/415 (42%), Positives = 244/415 (58%), Gaps = 7/415 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K ++    D I+N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDEYRSKNGYAGAEKAIKGLAPDEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+  + GTKL   SG V  P
Sbjct: 203 PFPASSGVWGKPTCVNNVETLCNVPAILANGIEWYQGINGGKSKDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 263 GVWELPFGITAREILEDYAGGMRDGL-RFKAWQPGGAGTDFLTADHL-DLPMDFESIGKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L  G  Q
Sbjct: 321 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +I+ L ++ +++  G+T CA    A  P+Q  IK FR   E  I   H  N  
Sbjct: 381 PGDIETLEQLCRSLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIAVKHFSNAH 435


>gi|238753750|ref|ZP_04615111.1| NADH-quinone oxidoreductase subunit F [Yersinia ruckeri ATCC 29473]
 gi|238707986|gb|EEQ00343.1| NADH-quinone oxidoreductase subunit F [Yersinia ruckeri ATCC 29473]
          Length = 439

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/406 (42%), Positives = 241/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L       ++N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 13  QPVWLDEYRSKNGYAGAEKALTGMAPPDVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 73  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 133 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVDWYQGITAGKSNDAGTKLMGFSGRVKNP 252

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    I+  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 253 GLWELPFGISAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 311 GSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGI 416


>gi|300023972|ref|YP_003756583.1| NADH dehydrogenase (quinone) [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525793|gb|ADJ24262.1| NADH dehydrogenase (quinone) [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 521

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 156/413 (37%), Positives = 230/413 (55%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
             +Q+R+     G+    S+ D    G +D + K L      I+ EV  SGLRGRGGAGF
Sbjct: 98  FKNQERLTFARCGITDPFSIEDYRKHGGYDGLTKALAMKPIDIVTEVTTSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +  + +D   Y+  NADE + GT  DR +M  +P  LIEG  IA+ A GA  
Sbjct: 158 PTGIKWKTVHDIAAD-QKYVACNADEGDSGTFADRMLMEGDPFCLIEGMTIAAVAGGATK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+ A++   A+  LG N    GY  D+ V  GAGAY+CGEET++L
Sbjct: 217 GYIYVRSEYPHSVHNLRQAIEIARAANWLGDNIQGSGYSFDLFVRMGAGAYVCGEETSML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S A VP IL +G  +Y  +G   +RGT
Sbjct: 277 ESLEGKRGLVRYKPPIPAIEGLFGKPTIINNVMSFAAVPIILAKGGEFYKNYGIGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F I+G++     VE++  +T  +LIE   GG       + AV  GG     LP  +  
Sbjct: 337 LAFQITGNIKQGGLVEKAFGVTTRQLIEDWGGGT-YSGRPVRAVQIGGPLGAYLPESK-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+   ++ + +G   ++V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 395 DVPMDYEEFAKVDAMVGHGGLVVFDDTVDMAKMARFAMEFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            VM+R++  + ++R I+LL ++ + +   ++CALG    +P++  ++ F    
Sbjct: 455 EVMDRIIADVDRERNIELLEDLCETMTDGSLCALGGLTPYPVRSALRGFPEDF 507


>gi|300782456|ref|YP_003762747.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
 gi|299791970|gb|ADJ42345.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
          Length = 431

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 197/406 (48%), Positives = 255/406 (62%), Gaps = 5/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               +    +   +  V K L    + ++  VK SGLRGRGGAGF  G+KWSFMP    D
Sbjct: 17  NSWQIGTYEALEGYTAVRKALAGTPEQLVQLVKDSGLRGRGGAGFPAGIKWSFMPPNF-D 75

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLV+NADE EPGTCKD  +M  +PH+LIEGC+IAS+A+ ++  FIYVRGE +     
Sbjct: 76  KPHYLVINADEGEPGTCKDIPLMMADPHSLIEGCIIASYAMRSNHCFIYVRGEALHCIRR 135

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L AAV E  A+G LG N    G+D+ I VH GAGAYICGEETALL+SLEG++GQPRLKPP
Sbjct: 136 LNAAVREAEAAGYLGENILGSGFDLKITVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 195

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PTTVNNVE+IA  P I+  G+SW+   GRE + G K++SISGHV  P   
Sbjct: 196 FPAAAGLYAAPTTVNNVETIASAPFIVNGGSSWFREMGREKSPGPKIYSISGHVEKPGQY 255

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +  T  EL++   G        L    PGGSS P      +    +D++G  E GS 
Sbjct: 256 ECPLGTTLRELLDMAGGM--KDGIPLKFWTPGGSSTPMFTVEHL-DVPLDFEGAAEAGSM 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT AV V + +  +  A+ + + FY+HESCG+CTPCREGT W+ +++ER+V+G   + +
Sbjct: 313 LGTTAVQVFNETVSVPWAVMKWTQFYEHESCGKCTPCREGTYWLAQILERMVEGHGTEED 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ID L +V  NI GR+ CALGD A  PI   IK FR       ++  
Sbjct: 373 IDTLLDVCDNILGRSFCALGDGAVSPITSGIKYFRDEFLALCEKNR 418


>gi|254430638|ref|ZP_05044341.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001]
 gi|197625091|gb|EDY37650.1| formate dehydrogenase, beta subunit [Cyanobium sp. PCC 7001]
          Length = 606

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 151/420 (35%), Positives = 245/420 (58%), Gaps = 7/420 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  +   +  +S+ D+++ G +  + ++L E   + + ++VK SGLRGRGGAG+ TG+KW
Sbjct: 119 VLESCGVVNPESIDDALAHGSYAQLKRVLLECTPEQVRDQVKRSGLRGRGGAGYPTGLKW 178

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             +       P  +V NADE +PG   DR ++  +PH LIEG  IA+FA+GA   ++YVR
Sbjct: 179 DTVALQPPG-PRTVVCNADEGDPGAFMDRSVLESDPHRLIEGMAIAAFAVGADQGYVYVR 237

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    E L+ A+ +  + GLLG+      +++ + V  GAGAY+CGEETALL S++G+
Sbjct: 238 AEYPLAIERLRLALRQARSKGLLGNGIAGSSFNLRLEVRVGAGAYVCGEETALLASIQGQ 297

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PR +PPFPA VGL+G PT +NNVE++A +P ILR G  WY+  G E ++GTK+F++S
Sbjct: 298 RGTPRPRPPFPAQVGLWGAPTLINNVETLASIPVILREGGDWYAAMGTEGSKGTKVFALS 357

Query: 246 GHVNYPCTVEESMSITFDELIEKH---CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           G V     VE  M  +   +++       G  G    + AV  GG S  C+PA  +    
Sbjct: 358 GAVERTGLVEVPMGTSLRTVVQTIGGGVPGGEGPDGGVKAVQTGGPSGGCIPA-HLLDTP 416

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DY+ L+ +GS +G+  ++VM   T + +       F  +ESCG+C PCR GT  +++++
Sbjct: 417 VDYESLRALGSMMGSGGLVVMGERTAMPEVARHFMRFSVNESCGKCVPCRAGTVQLLQLL 476

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +R V+  A   +++ L  +   +   ++C LG AA  P+   ++ FR   +    +  +C
Sbjct: 477 DRFVERRASLGDLERLEALCGMVGATSLCGLGQAAPNPVLSTLRYFRQEYQAACREPAQC 536


>gi|293395174|ref|ZP_06639460.1| NADH dehydrogenase I subunit F [Serratia odorifera DSM 4582]
 gi|291422351|gb|EFE95594.1| NADH dehydrogenase I subunit F [Serratia odorifera DSM 4582]
          Length = 450

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 172/407 (42%), Positives = 240/407 (58%), Gaps = 7/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K ++    D I+N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDEYRSKNGYAGAEKAIKGLAPDEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE++    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYVEAAV 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 HLRRAIAEATEAGLLGKNIMGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 203 PFPASAGVWGKPTCVNNVETLCNVPAILANGVDWYKGISAGKSNDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 263 GVWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIGKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L  G  Q
Sbjct: 321 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALENGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I 
Sbjct: 381 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIK 427


>gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF
           [Desulfatibacillum alkenivorans AK-01]
          Length = 633

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 148/424 (34%), Positives = 232/424 (54%), Gaps = 8/424 (1%)

Query: 5   QDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62
           Q R +  N+  +    + D ++ G +  + K L     + ++ EV+ SG+RGRGGAGF  
Sbjct: 148 QTRNVLKNIGTIDPTDIYDYIAVGGYQALAKALTTMTPEQVLEEVEKSGIRGRGGAGFPA 207

Query: 63  GMKWSFM--PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           G KW      K   ++P Y+VVN DE +PG   D  +M  +PH ++EG ++ ++A+G+  
Sbjct: 208 GRKWRGAVQAKERKNQPLYVVVNGDEGDPGAFMDGSVMEGDPHAVLEGLILGAYAMGSEK 267

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+    + L+ A+      GLLG N    G+  D  ++ GAGA++CGE TAL 
Sbjct: 268 GYMYVRAEYPLAIQHLEMAMAAARELGLLGDNILNTGFCFDAQINRGAGAFVCGESTALF 327

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK G+PR K       GL+GCPT +NNVE+ A +P I+ +GA WY+  G  NN GT
Sbjct: 328 TSIEGKAGEPRPKYVRSVEEGLWGCPTVLNNVETWANIPKIIDKGAEWYASIGSPNNTGT 387

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS+ G VN    VE  +  +   +  +  GG   G     AV  GG S  C+P  + +
Sbjct: 388 KVFSLVGKVNNVGLVEVPLGTSLSTI-IEDIGGGIPGGGEFKAVQTGGPSGGCIP-YKHK 445

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A +DYD L ++GS +G+  +IVMD+   ++        F + ESCG+C PCR G   M 
Sbjct: 446 DAPVDYDSLTKLGSMMGSGGMIVMDKRDCVVDVARYFLKFLEEESCGKCNPCRLGLTRMR 505

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            +++   KG   +++I+ L  ++ +I+   +CALG +A  P+   +  F+      I   
Sbjct: 506 EILDDFSKGCGSEQDIEDLMSLATSIQDGALCALGTSAPNPVLTTLHFFKDEYLAHIKD- 564

Query: 420 HRCN 423
            +C 
Sbjct: 565 QKCP 568


>gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 624

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 155/426 (36%), Positives = 239/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  +   +   S+ + ++ G ++ ++K L ++  + II+E+  S LRGRGG 
Sbjct: 138 FYKKQTRLVLEHCGHIDATSIKEYLAVGGYEALEKALFDRDDEGIIHEITESNLRGRGGG 197

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW+ + +   +   Y+V N DE +PG   DR IM  +PH ++EG +IA+ A  A
Sbjct: 198 GFPAGRKWTQVRRQV-EPTKYVVCNGDEGDPGAFMDRSIMEGDPHRMLEGMMIAAKACKA 256

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+DE    GLLG +     +  DI ++ GAGA++CGE +A
Sbjct: 257 REGYIYVRAEYPLAISRLRKAIDEAREYGLLGEHILGTDFSFDIKINRGAGAFVCGEGSA 316

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+  PT +NNVE+ A VP I+  G  WY G G E + 
Sbjct: 317 LTASIEGKRGMPRVKPPRTVEQGLFEKPTVLNNVETFANVPLIILNGVDWYKGIGPEKSP 376

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G++     +E  M  T  E+I    GG+R G  N  AV  GG S  C     
Sbjct: 377 GTKAFALTGNIENTGLIEVPMGTTLREVIFDIGGGMRDGA-NFKAVQIGGPSGGC-LTSD 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +D+D LK+ G+ +G+  ++VMD +T +++       F ++ESCG+C PCREGT  
Sbjct: 435 DLDLPLDFDSLKKAGAMIGSGGLVVMDENTCMVEVARFFMNFTQNESCGKCVPCREGTKR 494

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  ++ ++D L E++  I    +C LG  AA+P+   IK F+      I 
Sbjct: 495 MLEILERIVVGGGEENDLDQLLELADTISSTALCGLGKTAAFPVVSTIKKFKGEYLAHIV 554

Query: 418 QYHRCN 423
              +C 
Sbjct: 555 D-KKCP 559


>gi|239980147|ref|ZP_04702671.1| NADH dehydrogenase I chain F [Streptomyces albus J1074]
 gi|291452002|ref|ZP_06591392.1| NADH dehydrogenase subunit I F [Streptomyces albus J1074]
 gi|291354951|gb|EFE81853.1| NADH dehydrogenase subunit I F [Streptomyces albus J1074]
          Length = 449

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 194/411 (47%), Positives = 257/411 (62%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    
Sbjct: 28  ESWTLETYRRHDGYEGLRKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDG 86

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     
Sbjct: 87  KPHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRR 146

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV E Y +G LG +    G D+D+ VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 147 LHEAVREAYEAGYLGKDVLGSGLDLDLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 206

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPT VNNVESIA VP IL++G  W+   G E + G  L+S+SGHV  P   
Sbjct: 207 FPAVAGLYACPTVVNNVESIASVPAILQQGKEWFRSMGSEKSPGFTLYSLSGHVAGPGQY 266

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS 
Sbjct: 267 EAPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSM 323

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  +
Sbjct: 324 LGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGQGKMSD 383

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 384 LDKLNDIADNINGKSFCALGDGAASPIFSSLKYFRDEYEQHIT-GKGCPFD 433


>gi|238788650|ref|ZP_04632442.1| NADH-quinone oxidoreductase subunit F [Yersinia frederiksenii ATCC
           33641]
 gi|238723245|gb|EEQ14893.1| NADH-quinone oxidoreductase subunit F [Yersinia frederiksenii ATCC
           33641]
          Length = 440

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/406 (42%), Positives = 243/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 13  QPVWLDEYRSKTGYLGAEKALKGMAPPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 73  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAA 132

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 133 NLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 252

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 253 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 311 GSRLGTALAMAVDHEIGMVTLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 416


>gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
 gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
          Length = 635

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 149/425 (35%), Positives = 234/425 (55%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +   +L K    +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIARKGYFALADCLLNKQPLDVIDIIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  SD   Y+V NADE +PG   DR IM  +PH+++E   +  ++I +
Sbjct: 209 GFPTGLKWEFAHKQKSDI-KYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSISS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+++    GLLG +     +  DI + +GAGA++CGEETA
Sbjct: 268 SKGLVYIRAEYPLAINRLRIAINQARQYGLLGDHILGTEFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGAEWFAAIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLAAGSMMGSGGMIVMDEDDCMVSVSRFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   ++++D L  + + I+   +C LG  +  P+   + NF     E + 
Sbjct: 506 LLELLNKITEGRGTEKDLDTLATLGQVIKDTALCGLGQTSPNPVLSTLDNFYDEYLEHVR 565

Query: 418 QYHRC 422
               C
Sbjct: 566 D-KTC 569


>gi|304398212|ref|ZP_07380086.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. aB]
 gi|308187600|ref|YP_003931731.1| NADH dehydrogenase I chain F [Pantoea vagans C9-1]
 gi|304354078|gb|EFM18451.1| NADH-quinone oxidoreductase, F subunit [Pantoea sp. aB]
 gi|308058110|gb|ADO10282.1| NADH dehydrogenase I chain F [Pantoea vagans C9-1]
          Length = 448

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 168/404 (41%), Positives = 237/404 (58%), Gaps = 5/404 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+   +D I+  VK SGL+GRGGAGFSTG+KWS MPK  S
Sbjct: 24  QPVWLDEYRSKNGYAGAEKALKSMSQDEIVAAVKDSGLKGRGGAGFSTGLKWSLMPKDES 83

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 84  MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 143

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +G LG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 144 HLRRAIAEATEAGYLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 203

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G +G PT VNNVE+++ VP IL  G  WY    +  + GTK+   SG V  P  
Sbjct: 204 PFPASAGAWGKPTCVNNVETLSNVPAILANGVEWYKNISKSEDAGTKMMGFSGRVKNPGV 263

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E    IT  E++E + GG+R G     A  PGG+    L   Q     M++  + + GS
Sbjct: 264 WELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLT-DQHLDLPMEFASIGKAGS 321

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  
Sbjct: 322 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALEQKQGQPG 381

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  +
Sbjct: 382 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGM 425


>gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
          Length = 618

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 156/426 (36%), Positives = 230/426 (53%), Gaps = 8/426 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R IF     +   ++   +    +  ++K L E     II E+K +GLRGRGG 
Sbjct: 133 FYKLQKRVIFGRNQMIDPTNVLHYIGEDGYKGLEKALFEMEPQQIIQEIKGAGLRGRGGG 192

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW+   K   D   +++ NADE +PG   DR ++   PH++IEG +IA+ A+ +
Sbjct: 193 GFPTGIKWATCAKHDGD--RFVICNADEGDPGAYMDRSLLEGNPHSIIEGMLIAAVAMQS 250

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  F+YVR E+    ++L  A+      GLLG N    G+D DI V  G G+++CGE TA
Sbjct: 251 HNGFVYVRHEYPLAVKNLNIALKSAREIGLLGKNILGSGFDFDIKVSRGGGSFVCGESTA 310

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEGK G+PR K       G    P+++NNVE+ A VP I+  GA WY+  G E ++
Sbjct: 311 LMASLEGKPGRPRAKYVHTVEKGFRESPSSLNNVETYANVPHIINNGAEWYASMGTEGSK 370

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G+V     VE  M      +I    GGI        AV  GG S  C+P  Q
Sbjct: 371 GTKIFSLVGNVVNTGLVEVPMGTNLRTIIYDIGGGIP-KKKKFKAVQSGGPSGGCIP-EQ 428

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +D+D L ++GS +G+  +IVMD+ T ++        F K ESCGQC PCREG   
Sbjct: 429 FLDVPVDFDELVKIGSMMGSGGMIVMDQDTCMVDVARYFLDFLKEESCGQCNPCREGIKQ 488

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ V+ R+  G  ++ +I+LL E+   ++  ++C LG ++  P+   +  FR   E  I 
Sbjct: 489 MLDVLTRICAGEGKEGDIELLEELGAMVQKFSLCGLGTSSPNPVLTTLMYFRHEYEAHIR 548

Query: 418 QYHRCN 423
              +C 
Sbjct: 549 D-KKCP 553


>gi|226227063|ref|YP_002761169.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27]
 gi|226090254|dbj|BAH38699.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27]
          Length = 442

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 198/405 (48%), Positives = 266/405 (65%), Gaps = 7/405 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           + ++L+   +RG ++ ++K L      I N VK SGLRGRGGAGF TGMKWSFM      
Sbjct: 23  EARTLAGWRARGGYEALEKALATDPVEIQNIVKESGLRGRGGAGFPTGMKWSFMK--PDG 80

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           + HYL  NADESEPGT KDR+IMR  PH L+EG  + + AI A  A+IY+RGEF      
Sbjct: 81  KTHYLCCNADESEPGTFKDREIMRWTPHGLVEGVALGAHAIYAETAYIYIRGEFTEPYAR 140

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           + AAV+E YA+G+LG+N+   G  VD+ VH GAGAYICGEETAL+ SLEG++G PR+KPP
Sbjct: 141 VCAAVEEAYAAGILGANAMGSGKRVDVHVHRGAGAYICGEETALMNSLEGRRGNPRIKPP 200

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR---ENNRGTKLFSISGHVNYP 251
           FPA  GL+G PTT+NNVE++  VP I++ GA WY  FGR     + GTKLFS+ G+++ P
Sbjct: 201 FPAVAGLFGKPTTINNVETLTAVPYIVKNGAEWYKQFGRADNPKSIGTKLFSVCGNISRP 260

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E ++   F E +   CGG   G + + AVIPGGSSVP L   +   A+MDY+G+  +
Sbjct: 261 GNYEVALGFPFKEFLYDLCGGPLPGRE-IKAVIPGGSSVPILTREEAESALMDYEGMVAV 319

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +G+  VIV D   D+++ I RL+ FY HESC QC+ CREGT W  R+MER+  G   
Sbjct: 320 GTMMGSGGVIVFDDRQDMVRQIARLTRFYAHESCAQCSQCREGTAWTTRIMERIRDGQGT 379

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             ++D L  ++ N+ G+TIC L D+ A P+   +K FR   E +I
Sbjct: 380 AEDLDTLLSIADNMSGKTICVLSDSCATPVVSGLKKFRHEFEAKI 424


>gi|310768161|gb|ADP13111.1| NADH dehydrogenase I chain F [Erwinia sp. Ejp617]
          Length = 446

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 170/404 (42%), Positives = 242/404 (59%), Gaps = 5/404 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+    D I++ VK SGL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVFLDEYRSKNGYVGAEKALKTLTPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E  A+GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATAAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE+++ VP IL  G  WY G    ++ GTK+   SG V  P  
Sbjct: 202 PFPASAGVWGKPTCVNNVETLSNVPAILANGVDWYKGISNSDDAGTKMMGFSGRVKNPGV 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E++ GG+R G     A  PGG+    L   Q     M++  + + GS
Sbjct: 262 WELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLT-EQHLDLPMEFASIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERKEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  +
Sbjct: 380 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGM 423


>gi|154505522|ref|ZP_02042260.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
 gi|153794180|gb|EDN76600.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
          Length = 633

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 154/425 (36%), Positives = 238/425 (56%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + + + ++ G +  ++K+L E     +I E+  S LRGRGG 
Sbjct: 146 FYKKQTRNVLKNCGHIDSEHIQEYIAAGGYRALEKVLFEMTPAQVIEEISESNLRGRGGG 205

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWS + +   ++  Y+V N DE +PG   DR IM  +PH +IEG +I ++A+GA
Sbjct: 206 GFPTGYKWSQVARQP-EKVRYIVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIGAYAVGA 264

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +    GLLG       +   + ++ GAGA++CGE +A
Sbjct: 265 RDGYIYVRAEYPLAISRLKLAISQAEECGLLGDLILGTDFSFHLHINRGAGAFVCGEGSA 324

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+ A VP I+  GA W+   G EN+ 
Sbjct: 325 LTASIEGSRGMPRVKPPRTVEKGLFAKPTVLNNVETFANVPMIINEGAGWFKSIGPENSP 384

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G V +   +E  M  +  E+I    GGI+       AV  GG S  CL    
Sbjct: 385 GTKAFALTGSVKHTGLIEVPMGTSLREVIYDIGGGIKEDGK-FKAVQIGGPSGGCLVTRH 443

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK+MG+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  
Sbjct: 444 L-DVNLDFDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKR 502

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  +  ++DLL E++  I    +C LG +AA P+   +K FR    E + 
Sbjct: 503 MLEILERIVAGNGKLEDLDLLEELANMITETALCGLGKSAALPVVSTLKLFRDEYVEHVV 562

Query: 418 QYHRC 422
              +C
Sbjct: 563 D-KKC 566


>gi|188533351|ref|YP_001907148.1| NADH dehydrogenase I subunit F [Erwinia tasmaniensis Et1/99]
 gi|188028393|emb|CAO96254.1| NADH dehydrogenase I chain F [Erwinia tasmaniensis Et1/99]
          Length = 446

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 169/404 (41%), Positives = 241/404 (59%), Gaps = 5/404 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+    D I++ VK SGL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVFLEEYRSKNGYAGAEKALKTLAPDEIVSLVKDSGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G++G PT VNNVE+++ VP IL  G  WY G    ++ GTK+   SG V  P  
Sbjct: 202 PFPASAGVWGKPTCVNNVETLSNVPAILANGVDWYKGISNSDDAGTKMMGFSGRVKNPGV 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E++ GG+R G     A  PGG+    L   Q     M++  + + GS
Sbjct: 262 WELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLT-EQHLDLPMEFASIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  
Sbjct: 320 RLGTALAMAVDHEINMVSLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERKEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  +
Sbjct: 380 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGM 423


>gi|149909800|ref|ZP_01898451.1| NuoF2 NADH I CHAIN F [Moritella sp. PE36]
 gi|149807132|gb|EDM67088.1| NuoF2 NADH  I CHAIN F [Moritella sp. PE36]
          Length = 425

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/407 (42%), Positives = 241/407 (59%), Gaps = 6/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
              ++      G +  + KIL     D +I+ VKAS LRGRGGAGF TG+KWSF+PK   
Sbjct: 14  DSTNIEFYEKTGGYQGLKKILTTYSPDKVIDAVKASNLRGRGGAGFPTGLKWSFVPKDD- 72

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            + HYL  NADE EPGT KDR +M  +PH +IEG +IA++AI A  A+IY+RGE+    +
Sbjct: 73  GKIHYLCCNADEGEPGTFKDRLLMERDPHRVIEGMIIAAYAIRAEVAYIYIRGEYGLSID 132

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            +  A+   YA G LG N     + ++I VH GAGAYICGEETALLES+EG++GQP+LKP
Sbjct: 133 MITQAIKAAYAKGYLGKNIFNTDFCLNIYVHKGAGAYICGEETALLESIEGRRGQPKLKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY CPT +NNVE+   V  I  +G  W++  G ++  G +LF +SG +  P  
Sbjct: 193 PFPAVSGLYDCPTVINNVETFVCVTHIFAKGVDWFTSIGPDDAPGPRLFGLSGQLQNPGI 252

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           VE  M +   EL+  + GG   G     AVIPGG S P +P   +    M++  L    S
Sbjct: 253 VELPMGLPLSELVYDYGGGPLTG--KFKAVIPGGLSAPMIPLAGL-DVKMNFADLATADS 309

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +G+AAVI +D +  I     R++ F+ HESCG+C PCREG  W  +++ R+  G  +  
Sbjct: 310 MMGSAAVIALDETASIPAVGRRIAEFFSHESCGKCAPCREGLPWASKILNRIESGQGRPG 369

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++ L  +   +   + CALG  AAW I+  +K+F    +  I Q  
Sbjct: 370 DLEQLQVICGGVFNNSFCALGVGAAWAIRATLKHFPHEYDALITQQK 416


>gi|123441680|ref|YP_001005664.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088641|emb|CAL11436.1| NADH dehydrogenase I chain F [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 456

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 29  QPVWLDEYRSKNGYVGAEKALKSMAAPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 88

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 89  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 148

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 149 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 208

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 209 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 268

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 269 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 326

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 327 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 386

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 387 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 432


>gi|114566555|ref|YP_753709.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337490|gb|ABI68338.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 407

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 168/415 (40%), Positives = 244/415 (58%), Gaps = 11/415 (2%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + ++ RI    YG +    + D ++ G + +++K     +  +I EVK S LRGRGGAGF
Sbjct: 1   MAEEMRIVLRNYGKIDPLKIDDYIAAGGYKSLEKARSMKQTEVIEEVKKSNLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           + GMKW+F  +V S+   Y+V NADE EPGT KDR IM ++P ++IEG  I  +AIG+  
Sbjct: 61  NAGMKWNFSYQVQSE-EKYVVCNADEGEPGTYKDRIIMENDPQSVIEGMAICGYAIGSKK 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY RGE+    + L  A+ +  A G+LG       D D+ V  G GAY+CGEE+AL+E
Sbjct: 120 GYIYCRGEYPYVVDILNQAIAQAKAKGVLG-------DFDVEVRMGGGAYVCGEESALIE 172

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG +G+PR KPPFP  +GL+  PT VNNVE+ A +P I+ +G  WY   G  N  GTK
Sbjct: 173 SIEGHRGEPRFKPPFPPVIGLWQKPTIVNNVETFANIPIIIEKGGDWYKAIGAPNYPGTK 232

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           + +++G VN     E   + T  E+I    G    G     AV  GG+S   +P   +  
Sbjct: 233 VLTLTGDVNNRTFFEVPTNTTIREVIFGLGG-GVAGGKKFKAVQIGGTSGGFIPESNL-D 290

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D +  +G+ LG+ AV VMD S DI+  + R++ F++HESCG+C+PCREGT  M  
Sbjct: 291 TPIDFDSMNSIGAVLGSGAVFVMDESRDIVNVVARIAKFFEHESCGKCSPCREGTKRMHE 350

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           +MERL  G     +++LL  + K +    +C LG AA  P+   IKNF    + +
Sbjct: 351 MMERLNAGEGNAEDVELLGRLGKVMSVACLCGLGQAAPAPVLTTIKNFNADYQAK 405


>gi|118471561|ref|YP_886419.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium smegmatis
           str. MC2 155]
 gi|118172848|gb|ABK73744.1| NADH-quinone oxidoreductase, F subunit [Mycobacterium smegmatis
           str. MC2 155]
          Length = 443

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 209/419 (49%), Positives = 270/419 (64%), Gaps = 14/419 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        +  + + L  G D +I  VK SGLRGRGGAGF TG KWSF+P+   D
Sbjct: 16  EPWTLETYRRHDGYQGLQRALSMGPDDVIAFVKDSGLRGRGGAGFPTGTKWSFIPQERGD 75

Query: 76  RP--------HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           +P        HYLV+NADESEPGTCKD  ++   PH L+EG +IA++AI A  AFIYVRG
Sbjct: 76  QPAGGPAAKPHYLVINADESEPGTCKDIPLLLTTPHFLVEGAIIAAYAIRARHAFIYVRG 135

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E +     LQAAV E YA+G LG++    G+D+D+IVH GAGAYICGEETALL+SLEG++
Sbjct: 136 EVLPVLRRLQAAVAEAYAAGYLGTDIMGSGFDLDLIVHAGAGAYICGEETALLDSLEGRR 195

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPRL+PPFPA  GLY CPT VNNVESIA VP I+  G  W+   G E + G  L+S+SG
Sbjct: 196 GQPRLRPPFPAVAGLYACPTVVNNVESIASVPPIMVNGVDWFRSMGSEKSPGFTLYSLSG 255

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV  P   E  + IT  EL+E + GG+R G   L    PGGSS P L A  +    +DY+
Sbjct: 256 HVTRPGQYEAPLGITLRELLE-YAGGVRAG-HQLKFWTPGGSSTPLLTAEHL-DVPLDYE 312

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G+  +GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ ++  RL 
Sbjct: 313 GMASVGSMLGTKALQIFDETTCVVRAVRRWTQFYAHESCGKCTPCREGTYWLAQIYARLE 372

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            G   + +ID L ++S NI G++ CALGD AA PI   IK+FR      +D    C F 
Sbjct: 373 NGAGTEADIDKLLDISDNIFGKSFCALGDGAASPIMSSIKHFRDEYVAHLDGG--CPFD 429


>gi|194324420|ref|ZP_03058193.1| NADH-quinone oxidoreductase, f subunit [Francisella tularensis
           subsp. novicida FTE]
 gi|194321485|gb|EDX18970.1| NADH-quinone oxidoreductase, f subunit [Francisella tularensis
           subsp. novicida FTE]
          Length = 391

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/383 (52%), Positives = 250/383 (65%), Gaps = 4/383 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
            + II E+K SGLRGRGGAGF TG+KWSFMP+       Y+V N+DE EPGTCKDR+I+R
Sbjct: 7   PEQIIEELKISGLRGRGGAGFPTGLKWSFMPRNAPG-QKYVVCNSDEGEPGTCKDREILR 65

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYD 158
           + PH LIEG  IA + +GA   + Y RGEF       + A+ E Y +GLLG+N K  G  
Sbjct: 66  NNPHQLIEGMAIAGYVVGATAGYNYTRGEFYEPIARFEDALIEAYQAGLLGTNIKSSGIS 125

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+    GAGAYICGEETALL SLEGKKG+PR KPPFPA  GLY  PT +NN E+ A VP
Sbjct: 126 FDLYSAIGAGAYICGEETALLNSLEGKKGRPRFKPPFPAFKGLYDKPTNINNTETYASVP 185

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL+ G  W+   G E + GTKLF +SGHV     VE  + + F EL++  CGG+R G  
Sbjct: 186 AILQYGGEWFKKLGTEKSGGTKLFCVSGHVQQQKVVEIGLGMPFKELLDM-CGGVRNGNK 244

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
            L AVIPGGSS   L A +M    MDY+ +   GS LG+ AV+V+D +T +++ + RL+ 
Sbjct: 245 -LKAVIPGGSSSKILTADEMMAVTMDYESIAAAGSMLGSGAVVVLDETTCMVRTLARLAD 303

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           FY  ESCGQCTPCREGTGW+ R + R+V G  +  +ID L  V+ NIEG TIC LGDAAA
Sbjct: 304 FYYEESCGQCTPCREGTGWLARTLHRIVAGEGRPEDIDTLVRVATNIEGNTICGLGDAAA 363

Query: 399 WPIQGLIKNFRPLIEERIDQYHR 421
           WP+Q  I  FR      I+   R
Sbjct: 364 WPVQSYIDKFRHEFVYMIENNGR 386


>gi|332830193|gb|EGK02821.1| NADH oxidoreductase, F subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 457

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 194/411 (47%), Positives = 265/411 (64%), Gaps = 16/411 (3%)

Query: 21  SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
                 G + +V+K L+    D ++ +VK SG+RGRGGAGF  GMKWSF+ K  S +P +
Sbjct: 19  EVYRKNGGYASVEKALKTMTPDEVVEQVKTSGMRGRGGAGFPMGMKWSFIDK-KSGKPRH 77

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           LVVNADESEPGT KDR +M H PH LIEG +++S+A+ A+ ++IY+RGE++   + L+ A
Sbjct: 78  LVVNADESEPGTFKDRFLMHHIPHLLIEGAIVSSYALEANLSYIYIRGEYMWIFKILEKA 137

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           + E YA+G LG N    GYD+D+ VH GAGAYICGEETAL+ESLEGK+G PR+KPPFPA 
Sbjct: 138 IKEAYANGWLGKNILGTGYDLDLYVHCGAGAYICGEETALIESLEGKRGNPRIKPPFPAV 197

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+  PT VNNVESI+ V  I+  G   Y+  G   + GTKL S SGH+  P   E  +
Sbjct: 198 SGLWNEPTVVNNVESISTVSWIINNGGEEYAKIGIGRSTGTKLMSASGHIKNPGVYEIEL 257

Query: 259 SITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR------GAIMDYDGLKE 310
            ++ DE    +++CGG+      L AVIPGG SVP LP   +         ++ Y+ L +
Sbjct: 258 GMSVDEFFNSDEYCGGMLDDRP-LKAVIPGGCSVPILPPQYIFKTANGEDRLLSYESLSD 316

Query: 311 ----MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
                GS LG+   IV + +  I++  W  S F+ HESCGQC+PCREGTGWM +++ R+ 
Sbjct: 317 GGFVTGSSLGSGGFIVYNDTACIVRNTWNFSRFFHHESCGQCSPCREGTGWMDKILHRIE 376

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            G  ++ +IDLL+ +   IEG TIC LGDAA+WP+   I++FR   E  + 
Sbjct: 377 TGFGREEDIDLLWSIQSKIEGNTICPLGDAASWPVAAAIRHFREEFEYHVR 427


>gi|86739256|ref|YP_479656.1| NADH-quinone oxidoreductase,subunit F [Frankia sp. CcI3]
 gi|86566118|gb|ABD09927.1| NADH dehydrogenase subunit F [Frankia sp. CcI3]
          Length = 443

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 198/398 (49%), Positives = 259/398 (65%), Gaps = 5/398 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  ++        +  +        D +I  VK SGLRGRGGAGF TGMKW F+P+    
Sbjct: 15  ESWTIETYTRLDGYTALRTAFAMAPDDLIKLVKDSGLRGRGGAGFPTGMKWGFIPQ-GDG 73

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           RPHYLV+NADE EPGTCKD  +M  +PH+LIEG +IA++A+ A  AF+Y+RGE I     
Sbjct: 74  RPHYLVINADEGEPGTCKDAPLMMADPHSLIEGIIIAAYAVRAGRAFVYLRGELIHAARR 133

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQAAV E Y +G LG +    G+D+D++VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 134 LQAAVAEAYRAGYLGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGRRGQPRLRPP 193

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVE+IA VP I+  G  W+   GRE + G K++S+SGHV  P   
Sbjct: 194 FPATHGLYASPTVVNNVETIASVPYIVNYGVDWFRSMGRERSPGPKIYSLSGHVTRPGQY 253

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T  EL++   G    G   L A  PGGSS P L A  +  A +D++G++E GS 
Sbjct: 254 EAPMGTTLRELLDLAGG--VRGGHGLKAWTPGGSSTPMLTAEHL-DAPLDFEGMQEAGSL 310

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGTAA+++MD + D++K + RL+ FY HESCG+CTPCREGT WM++++ R+ +G     +
Sbjct: 311 LGTAALMIMDDTVDMLKVVRRLTQFYAHESCGKCTPCREGTTWMVQILSRMERGQGDAED 370

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +D L +   NI GR  CAL D A  PI   IK FR   
Sbjct: 371 VDTLVDACDNIFGRAFCALADGATSPIVSGIKYFRDEF 408


>gi|237746746|ref|ZP_04577226.1| NADH dehydrogenase subunit I F [Oxalobacter formigenes HOxBLS]
 gi|229378097|gb|EEO28188.1| NADH dehydrogenase subunit I F [Oxalobacter formigenes HOxBLS]
          Length = 433

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 208/422 (49%), Positives = 279/422 (66%), Gaps = 8/422 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFST 62
           +  +F  L G    +L+D  +RG ++ + +IL        I+ EV+ +GLRGRGGAGF T
Sbjct: 10  EPVLFKGLTGEN-WTLADYRARGGYEQIGRILGGHMPAGQIVAEVRTAGLRGRGGAGFPT 68

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
            +KW FMPK  +    YL+ NADESEPGT KDRDI+R+ PH +IEG +IA++A+G    +
Sbjct: 69  AVKWGFMPKDHAG-QTYLICNADESEPGTFKDRDILRYNPHAVIEGMLIAAYAMGITAGY 127

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+ GE     E    A+ +   +GL+G N    G+D ++   HG GAYICGEETALLES
Sbjct: 128 IYIHGEIWTVYERFGEAIRQAREAGLIGKNIMDSGFDFELHAVHGYGAYICGEETALLES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+GQPR KPPFPA  GLYG PTT+NNVE++A VP I+  G   Y+G GR+   GTK+
Sbjct: 188 MEGKRGQPRFKPPFPAANGLYGRPTTINNVETLAYVPFIMAMGGKAYAGLGRDGCSGTKV 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+SG V  P   E  + I F EL+E   G   G    + AVIPGGSS P LPA  M   
Sbjct: 248 FSVSGDVVCPGNYEVPLGIPFPELLELAGGVKGGN--KIRAVIPGGSSSPVLPAETMLAL 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LGT  VIV+D +  ++K++  LS FY +ESCGQCTPCREGTGW++++
Sbjct: 306 NMDYDSIAKAGSMLGTGGVIVLDETRCMVKSLLNLSRFYWNESCGQCTPCREGTGWLVKL 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +ER+ KG  +  ++DLL  V+ NI+GRTICALGDAAA P++  +++FR   E  I ++ R
Sbjct: 366 IERIEKGQGKPADLDLLDTVAANIQGRTICALGDAAAMPVRSFLRHFRQEFEYHI-EHKR 424

Query: 422 CN 423
           C 
Sbjct: 425 CP 426


>gi|322831988|ref|YP_004212015.1| NADH-quinone oxidoreductase, F subunit [Rahnella sp. Y9602]
 gi|321167189|gb|ADW72888.1| NADH-quinone oxidoreductase, F subunit [Rahnella sp. Y9602]
          Length = 453

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 172/410 (41%), Positives = 244/410 (59%), Gaps = 7/410 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   + +  S+  +   +K L+   ++ I+N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 26  QPVWIDEYRSKNGYVGAEKALKGMAQEEIVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 85

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ ++  +I++RGE+I    
Sbjct: 86  MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLISAFALKSYRGYIFLRGEYIEAAV 145

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 146 NLRRAIAEATEAGLLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 205

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G +G PT VNNVE++  VP IL  G  WY G   G+  + GTKL   SG V  P
Sbjct: 206 PFPASAGAWGKPTCVNNVETLCNVPAILEHGVDWYKGISAGKSEDAGTKLMGFSGRVKNP 265

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E++ GG+R G     A  PGG+    L A  +    MD+  + + 
Sbjct: 266 GVWELPFGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFASIGKA 323

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 324 GSRLGTALAMAVDNEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 383

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I + H
Sbjct: 384 PGDIETLEQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIAKQH 433


>gi|238920563|ref|YP_002934078.1| NADH dehydrogenase I subunit F [Edwardsiella ictaluri 93-146]
 gi|238870132|gb|ACR69843.1| NADH oxidoreductase [Edwardsiella ictaluri 93-146]
          Length = 448

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 171/408 (41%), Positives = 245/408 (60%), Gaps = 7/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  +   ++ L+   +D ++  VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLEEYRAKNGYHAAERALKGMAQDEVVTLVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE++R  E
Sbjct: 82  MNVRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLIGAYALKAYRGYIFLRGEYVRAAE 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+DE  A+GLLG N    G+D D+ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIDEARAAGLLGKNIFGSGFDFDLFVHTGAGRYICGEETALINSLEGRRANPRAKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP I+  G +WY G   G+  + GTKL   SG V  P
Sbjct: 202 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGVAWYQGLSAGKSQDAGTKLMGFSGRVKNP 261

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD+  + + 
Sbjct: 262 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTEAHL-DLPMDFASIGKA 319

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 320 GSRLGTALAMAVDHEINMVSLLCNLESFFARESCGWCTPCRDGLPWGLKILRALERGEGQ 379

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I +
Sbjct: 380 PGDIETLEQLCRLLAPGHTFCAHAPGAVEPLQSAIKYFRGEFEAGIAR 427


>gi|225405663|ref|ZP_03760852.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme
           DSM 15981]
 gi|225042808|gb|EEG53054.1| hypothetical protein CLOSTASPAR_04884 [Clostridium asparagiforme
           DSM 15981]
          Length = 1048

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 155/424 (36%), Positives = 238/424 (56%), Gaps = 6/424 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   ++  SL   ++R  +  + K L    ++ ++  VK +GLRGRGGA
Sbjct: 147 FFEGQIRIALRNCGQMEFSSLEAYVARDGYAALAKALHGMTQEDVVTVVKDAGLRGRGGA 206

Query: 59  GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TG+KW    K  S D   ++V NADE +PG   DR ++  +PH++IEG ++  +AIG
Sbjct: 207 GFPTGVKWEAGLKAVSGDGRKFMVCNADEGDPGAFMDRSLLEGDPHSIIEGMMLGGYAIG 266

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   ++YVR E+    E L  A+D+  A+G+LG +     +  D+ +  GAGA++CGEET
Sbjct: 267 ASKGYVYVRAEYPIAVERLGNAIDQARAAGILGEHILGSNFSFDLEIRIGAGAFVCGEET 326

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           +LL S+EGK+G+PR KPPFP   GL+  PT +NNVE++A V  I+  G+ WY  FG E +
Sbjct: 327 SLLASIEGKRGEPRQKPPFPFEKGLFESPTIINNVETLANVAPIVLNGSQWYRQFGTEKS 386

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+F+++G +     +E  M     ++     GG   G     A+  GG S  CL   
Sbjct: 387 AGTKVFALAGDIVNAGIIEVPMGTILGDI-IYKIGGGIIGGKKFKAIQSGGPSGGCLTKE 445

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DY+ L ++G+ +G+  +IVM+  T ++        F   ESCG+C PCR GT 
Sbjct: 446 HL-NTPVDYESLAKLGAIMGSGGLIVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTR 504

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ER+ +G  +  ++DLL E++  I+   +C LG  A  P+   +K FR   E  I
Sbjct: 505 RMLEILERITEGKGEPGDLDLLEELAGTIQQTAMCGLGQTAPNPVLSTLKYFRDEYEAHI 564

Query: 417 DQYH 420
              H
Sbjct: 565 YDKH 568


>gi|238798408|ref|ZP_04641889.1| NADH-quinone oxidoreductase subunit F [Yersinia mollaretii ATCC
           43969]
 gi|238717722|gb|EEQ09557.1| NADH-quinone oxidoreductase subunit F [Yersinia mollaretii ATCC
           43969]
          Length = 439

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/406 (42%), Positives = 243/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 13  QPVWLDEYRSKTGYLGAEKALKGMAPPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 73  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 133 NLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 252

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 253 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 311 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 416


>gi|238751244|ref|ZP_04612738.1| NADH-quinone oxidoreductase subunit F [Yersinia rohdei ATCC 43380]
 gi|238710518|gb|EEQ02742.1| NADH-quinone oxidoreductase subunit F [Yersinia rohdei ATCC 43380]
          Length = 439

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 173/406 (42%), Positives = 243/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 13  QPVWLDEYRSKTGYLGAEKALKGMAPPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 73  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 133 NLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 252

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 253 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 311 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 416


>gi|154508642|ref|ZP_02044284.1| hypothetical protein ACTODO_01143 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798276|gb|EDN80696.1| hypothetical protein ACTODO_01143 [Actinomyces odontolyticus ATCC
           17982]
          Length = 434

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 201/418 (48%), Positives = 250/418 (59%), Gaps = 12/418 (2%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I TN +G +   +L    SRG +  ++K        I+  VK SGLRGRGGAGF +G+KW
Sbjct: 14  ILTNGWGEERSWTLDSYRSRGGYQGLEKARTMEPADIVQAVKDSGLRGRGGAGFPSGLKW 73

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YLVVNADESEPGTCKD  ++   PH LIEG  I S AIG   AF+Y+R
Sbjct: 74  SFLPPADGG-PRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE       L  AV E   +G+LG       D+ I  H GAGAYICGEETALL+SLEG++
Sbjct: 133 GEVTHVYRRLLEAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GLY  PT VNNVE+IA V  I R    W++  G E ++G  +FS+SG
Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPEWFASMGTEKSKGHGIFSVSG 245

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HVN P   E    IT  ELIE   G        L    PGGSS P     ++    +DY+
Sbjct: 246 HVNNPGQFEAPFGITMRELIEMAGG--IRDGHKLKFWTPGGSSTPIFTEDEL-DTPLDYE 302

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS LGT A+ V D +  +++ I R S FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +G  +  ++DLL E++ NI GR+ C LGDAAA PI   IK FR   E  +    R  F
Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420


>gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191]
 gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191]
          Length = 620

 Score =  458 bits (1178), Expect = e-127,   Method: Composition-based stats.
 Identities = 148/426 (34%), Positives = 235/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   +   +  + +++ +S G +  + K L E   +  I E+K SGLRGRGG 
Sbjct: 134 FYRKQHRILLKDCGKINPEDINEYISHGGYSALAKCLNELKEEGTIEEIKKSGLRGRGGG 193

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  +    +  Y++ N DE +PG   DR ++   PH +IEG +I  FA GA
Sbjct: 194 GFPTGLKWQFT-RASKGKQKYMICNGDEGDPGAYMDRSLLEGNPHAVIEGMIIGGFATGA 252

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
                Y+R E+      +QAA+D  Y +GLLG N     +  D+ + +GAGA++CGEETA
Sbjct: 253 SKGLFYIRAEYPLAISRVQAAIDAAYKAGLLGKNILGSKFSYDLEIRYGAGAFVCGEETA 312

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G P  KPPFP+  GL+GCPT++NNVE++A +P I+  G+ W+S  G   + 
Sbjct: 313 LMRSIEGQRGTPTPKPPFPSVKGLWGCPTSINNVETLANIPLIIYNGSEWFSKIGSGKST 372

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V     +E  M IT  E++     G       + AV  GG S   +PA +
Sbjct: 373 GTKVFAMTGKVKSSGLIEVPMGITIKEVVFDIGEG-AYDGRVIKAVQTGGPSGGVIPAEK 431

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                + Y+ L E GS +G+  +IVMD S  ++        F   ESCG+C PCR G   
Sbjct: 432 -FDMPITYESLIEAGSMMGSGGLIVMDNSDCMVDIAKFYLEFCVEESCGKCVPCRIGGYQ 490

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++++++ + +G       + +  ++  ++  ++CALG  A  P+   +K+F    +E + 
Sbjct: 491 LLKILKDISEGKEVGDYKEKIGNLALTMQKASLCALGQTAPNPVLSCLKSFGHEFDEHVK 550

Query: 418 QYHRCN 423
           + H C 
Sbjct: 551 EKH-CP 555


>gi|159039970|ref|YP_001539223.1| NADH-quinone oxidoreductase, F subunit [Salinispora arenicola
           CNS-205]
 gi|157918805|gb|ABW00233.1| NADH-quinone oxidoreductase, F subunit [Salinispora arenicola
           CNS-205]
          Length = 443

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 192/407 (47%), Positives = 246/407 (60%), Gaps = 8/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               +        +  + K L    D +I  VK SGLRGRGGAGF TG+KW F+P+    
Sbjct: 24  DAWRIGTYERLDGYAALRKALGAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQEPDG 83

Query: 76  R----PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
           R    PHYLVVNADE EPGTCKD  +M H+PH+LIEG +IAS+AI A+ A+IY+RGE + 
Sbjct: 84  RSPTRPHYLVVNADEGEPGTCKDLPLMTHDPHSLIEGVIIASYAIRANRAYIYIRGEAVH 143

Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
               L+ AV E YA G LG N    G+D+D++VH GAGAYICGEETALL+SLEG +GQPR
Sbjct: 144 AARRLRHAVQEAYARGYLGRNILGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPR 203

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
           L+PPFPA  GLY  PT VNNV +IA VP I+  GA W+   G E + G  ++S+SG V  
Sbjct: 204 LRPPFPATHGLYASPTVVNNVGTIASVPYIVSGGADWWRTMGTEKSSGPMIYSLSGRVVN 263

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E SM IT  ELIE   G       +L    PGGSS P L A  +    +D++ +  
Sbjct: 264 PGQYECSMGITLRELIELAGGM--QPGHSLRFWTPGGSSTPLLTAEHL-DVPLDFEEVAA 320

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT A  +       + A +R   FY HESCG+CTPCREG  WM+RV  R++ G  
Sbjct: 321 AGSILGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILSGQG 380

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            + ++D L +   NI GR+ C LGD A  P+   +K F+    + I+
Sbjct: 381 TQEDLDTLLDTCDNILGRSFCGLGDGATSPVTSSLKYFKQDYLDYIE 427


>gi|332162385|ref|YP_004298962.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666615|gb|ADZ43259.1| NADH dehydrogenase I subunit F [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 455

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 29  QPVWLDEYRSKNGYVGAEKALKSMAAPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 88

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 89  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 148

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 149 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 208

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 209 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 268

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 269 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 326

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 327 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 386

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 387 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 432


>gi|255019912|ref|ZP_05291987.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970692|gb|EET28179.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus
           ATCC 51756]
          Length = 428

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 210/415 (50%), Positives = 263/415 (63%), Gaps = 6/415 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
             N        LS   S G +  + KI  +G   + +I E+K S LRGRGGAGF TG+KW
Sbjct: 8   LKNRGIPDSHRLSVYESTGGYQALRKIFAEGITPEQVIAEMKTSALRGRGGAGFPTGLKW 67

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMPK  S    YL+ NADE EPGTCKDRDIMR+EPH LIEG +I ++A+GA   +I++R
Sbjct: 68  SFMPKGVSG-TKYLLCNADEGEPGTCKDRDIMRYEPHRLIEGMIIGAYAMGARAGYIFIR 126

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEFI     ++AA++E YA+G LG       +  D+ VH GAGAYICGEETAL+E+LEGK
Sbjct: 127 GEFIEPIRRVEAALEEAYAAGFLGERILGQEFSFDLYVHRGAGAYICGEETALMEALEGK 186

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           KGQPR KPPFPA+ GLYG PTT+NNVE+ A VP I+ RG  W+   G+ NN GTK+FS++
Sbjct: 187 KGQPRFKPPFPASYGLYGRPTTINNVETFASVPDIIVRGGQWFLDLGKANNGGTKIFSVT 246

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E  M   F EL++   G       +L AVIPGG+S   L    M    MDY
Sbjct: 247 GQVQRPGNYEVPMGTPFPELLDMAGG--LHPGRSLKAVIPGGTSTAMLAGATMMECTMDY 304

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D + + GS LG  +VIV+D S  I++ + R++ FY HESCGQCTPCREG GW+ RVM R+
Sbjct: 305 DSIAKAGSALGAGSVIVIDDSVCIVRVVERIARFYMHESCGQCTPCREGMGWLWRVMHRI 364

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             G  + ++IDLL  V   IEGRTICAL D    P+   IK FR   E  I    
Sbjct: 365 ENGQGRAQDIDLLLNVGARIEGRTICALADGGVAPVVSSIKLFRDEYEHHIRHGQ 419


>gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 594

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 149/422 (35%), Positives = 233/422 (55%), Gaps = 6/422 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61
             + R   N   +  +++ D +    +  ++K+L+      +I E+ ASGLRGRGG GF 
Sbjct: 112 KQERRALKNCGVIDPENIEDFLKNDGYKGIEKVLKTMSNRDVIKEIFASGLRGRGGGGFF 171

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW     + ++   Y+V NADE +PG   DR I+  +PH++IEG +IA +AIGA   
Sbjct: 172 TGIKWEIASNIEAE-QKYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKG 230

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            +Y+R E+      L  A++     G LG N     ++ DI +  GAGA++CGEETAL+ 
Sbjct: 231 LVYIRAEYPLAIHRLSVAIEAARKKGFLGKNILGTDFEFDIELKFGAGAFVCGEETALIH 290

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G+P  KPP+PA  G +  PT VNNVE++  VP IL  G  W+   G E + GTK
Sbjct: 291 SMEGRRGEPTSKPPYPAEKGFWDKPTVVNNVETLVNVPGILLYGKEWFREVGTEKSPGTK 350

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +N    VE  M I+  E+I +  GGI+       AV  GG S  CL    +  
Sbjct: 351 VFALAGKINNVGLVEVPMGISLREIIFEIGGGIKDN-KKFKAVQTGGPSGGCLTEKDL-D 408

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L + GS +G+  ++VMD    ++        F   ESCG+CTPCR G   +  
Sbjct: 409 TPIDFDTLSKKGSIMGSGGMVVMDEDDCMVAIAKFFLEFTLDESCGKCTPCRVGNTRLYE 468

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++++ +G     ++ LL E+S+ I+  ++C LG  +A P+   +  F     E +    
Sbjct: 469 MLDKITQGRGTLEDLHLLQELSEGIKATSLCGLGQTSANPVLSTLAQFYDEYVEHVVD-K 527

Query: 421 RC 422
           RC
Sbjct: 528 RC 529


>gi|269794078|ref|YP_003313533.1| NADH dehydrogenase subunit F [Sanguibacter keddieii DSM 10542]
 gi|269096263|gb|ACZ20699.1| NADH dehydrogenase subunit F [Sanguibacter keddieii DSM 10542]
          Length = 449

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/402 (49%), Positives = 252/402 (62%), Gaps = 5/402 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             +L   ++ G ++ +   L +    ++  VK SGLRGRGGAGF TGMKW F+P      
Sbjct: 18  SWTLETYLANGGYEGLRAALAQPAADVVQTVKDSGLRGRGGAGFPTGMKWGFLP-APDGG 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVNADESEPGTCKD  +M   P TL+EG  I S+AIG H AFIYVRGE +     L
Sbjct: 77  PRYLVVNADESEPGTCKDIPLMLASPQTLVEGVAITSYAIGCHHAFIYVRGEVLHVYRRL 136

Query: 137 QAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             AV+E YA+G LG +    G+D+D+ VH GAGAYICGEETALL+SLEG +GQPRLKPPF
Sbjct: 137 LKAVEEAYAAGYLGKDVLGSGFDLDVTVHAGAGAYICGEETALLDSLEGLRGQPRLKPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT VNNVES+A VP I+ RGASW++  G E + G  LFS+SGHV +P   E
Sbjct: 197 PAVAGLYARPTVVNNVESVASVPQIVARGASWFTSMGTERSAGHGLFSLSGHVTHPGQYE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + IT  EL++   G    G   L    PGGSS P   A  +    +DY+ +   GS L
Sbjct: 257 APLGITLRELLDMAGG--VRGGRALKFWTPGGSSTPIFTAEHL-DVPLDYESVAAAGSML 313

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +V+ RL  G   + +I
Sbjct: 314 GTRALQIFDETTSVVRAVTRWTEFYAHESCGKCTPCREGTYWLKQVLRRLEAGQGTQGDI 373

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           D L +   NI GR  CALGD A   I   ++ FR   E  + 
Sbjct: 374 DTLLDTCDNILGRAFCALGDGATSCITSAVQYFREEFEAGMH 415


>gi|238784996|ref|ZP_04628994.1| NADH-quinone oxidoreductase subunit F [Yersinia bercovieri ATCC
           43970]
 gi|238714112|gb|EEQ06126.1| NADH-quinone oxidoreductase subunit F [Yersinia bercovieri ATCC
           43970]
          Length = 439

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 174/406 (42%), Positives = 243/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      ++N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 13  QPVWLDEYRSKTGYLGAEKALKGMAPPDVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 73  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 133 NLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 252

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 253 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 311 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 416


>gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 597

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 154/417 (36%), Positives = 231/417 (55%), Gaps = 5/417 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  ++  +   SL D ++RG ++ + + L+   D II EV+ SGLRG+GGAGF TG KW 
Sbjct: 116 VLKDVGIIDPLSLDDYIARGGYEGLKRALKMTPDEIITEVEKSGLRGKGGAGFPTGRKWR 175

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                    P Y+V N DE +PG   D   M   PH +IEG +I + AIGA    +Y+R 
Sbjct: 176 TAAGYD-VFPKYIVCNGDEGDPGAFMDGSTMEGSPHAVIEGMIIGALAIGAEEGVLYIRD 234

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+   R+ +Q A+D+ YA+G+LG +     + +D+ +  G GA++CGE TAL+ S+EG+ 
Sbjct: 235 EYALARDHIQHAIDDAYAAGILGESILGTDHKLDLSIVRGGGAFVCGESTALMASIEGRV 294

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR K       GL+  PT +NNVES+A +PTILR G   Y+  G +N++GTK+F++ G
Sbjct: 295 GEPRAKYIRSVQRGLFDNPTVLNNVESLASIPTILRDGGEKYAEIGTDNSKGTKVFAMVG 354

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V +   VE  M  T   L     GG   G     A+  GG S  C+P   +    +D+D
Sbjct: 355 KVKHTGLVEVPMGTTLRTL-IYDIGGGIIGDRPFKAIQTGGPSGGCIPEE-LLDLPVDFD 412

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L E G+ +G+  +IVMD  + +++       F   ESCG+CTPCREG   M  ++  + 
Sbjct: 413 TLVEYGAMMGSGGMIVMDDRSCMVEVARYYVDFLCEESCGKCTPCREGLRQMRAILTDIC 472

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           +G  +  +I+LL  +   ++  ++CALG  A  P+   IK FR   E  ID    C 
Sbjct: 473 EGRGKPGDIELLERIGHTMQDASLCALGRTAPNPVLTTIKFFRDEYEAHID-GKECP 528


>gi|208780263|ref|ZP_03247605.1| NADH-quinone oxidoreductase, f subunit [Francisella novicida FTG]
 gi|208743912|gb|EDZ90214.1| NADH-quinone oxidoreductase, f subunit [Francisella novicida FTG]
 gi|332678972|gb|AEE88101.1| NADH-ubiquinone oxidoreductase chain F [Francisella cf. novicida
           Fx1]
          Length = 391

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 201/383 (52%), Positives = 250/383 (65%), Gaps = 4/383 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
            + II E+K SGLRGRGGAGF TG+KWSFMP+       Y+V N+DE EPGTCKDR+I+R
Sbjct: 7   PEQIIEELKISGLRGRGGAGFPTGLKWSFMPRNAPG-QKYVVCNSDEGEPGTCKDREILR 65

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYD 158
           + PH LIEG  IA + +GA   + Y RGEF       + A+ E Y +GLLG+N K  G  
Sbjct: 66  NNPHQLIEGMAIAGYVVGATAGYNYTRGEFYEPIARFEDALIEAYQAGLLGTNIKSSGIS 125

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+    GAGAYICGEETALL SLEGKKG+PR KPPFPA  GLY  PT +NN E+ A VP
Sbjct: 126 FDLYSAIGAGAYICGEETALLNSLEGKKGRPRFKPPFPAFKGLYDKPTNINNTETYASVP 185

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL+ G  W+   G E + GTKLF +SGHV     VE  + + F EL++  CGG+R G  
Sbjct: 186 AILQYGGEWFKKLGTEKSGGTKLFCVSGHVQQQRVVEIGLGMPFKELLDM-CGGVRNGNK 244

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
            L AVIPGGSS   L A +M    MDY+ +   GS LG+ AV+V+D +T +++ + RL+ 
Sbjct: 245 -LKAVIPGGSSSKILTADEMMAVTMDYESIAAAGSMLGSGAVVVLDETTCMVRTLARLAD 303

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           FY  ESCGQCTPCREGTGW+ R + R+V G  +  +ID L  V+ NIEG TIC LGDAAA
Sbjct: 304 FYYEESCGQCTPCREGTGWLARTLHRIVAGEGRPEDIDTLVRVATNIEGNTICGLGDAAA 363

Query: 399 WPIQGLIKNFRPLIEERIDQYHR 421
           WP+Q  I  FR      I+   R
Sbjct: 364 WPVQSYIDKFRHEFVYMIENNGR 386


>gi|225871980|ref|YP_002753434.1| NADH dehydrogenase I, F subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225792115|gb|ACO32205.1| NADH dehydrogenase I, F subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 437

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 199/415 (47%), Positives = 265/415 (63%), Gaps = 5/415 (1%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
            +G     +   +    + +V K LE   D IINE+K SGLRGRGGAGF TGMKWSF+PK
Sbjct: 17  RFGRGAVDIDRYIELEGYSSVRKCLEMEPDAIINEMKTSGLRGRGGAGFPTGMKWSFVPK 76

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
             + +P Y++VN DESEPGTCKDR I  H+PH++IEG +IA  AIGA   FIY+RGE+  
Sbjct: 77  QSA-KPKYVLVNGDESEPGTCKDRLIFEHDPHSVIEGTMIAGLAIGAKMGFIYLRGEYRY 135

Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
             + ++ AV   YA G LG       +D D++V  GAGAY  GEE+AL+ESLEGK+G PR
Sbjct: 136 LIQIMEKAVAAAYAKGFLGKGIFGSQHDFDVVVQTGAGAYEVGEESALMESLEGKRGVPR 195

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
           +KPPFPA VGLYG PT +NN E++A VP I R GA+ Y+ +G E N GT+LF ISGHV  
Sbjct: 196 IKPPFPAVVGLYGGPTVINNAETLASVPHIFRIGAAEYAKYGTERNGGTRLFCISGHVEK 255

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E  M     ++I +  GGI  G   L AV+PGGSSVP L   ++    MD+D + +
Sbjct: 256 PGVYELPMGYNLKKMIYEVAGGI-LGGKKLKAVVPGGSSVPVLLPDEI-DIGMDFDQVAK 313

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LG+  V+V+D S  +++   R   FY+HESCG C PCREGT W+ + + RL  G A
Sbjct: 314 AGSMLGSGGVVVLDESVCMVEFALRTIKFYRHESCGWCIPCREGTDWLQKSITRLHMGGA 373

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             ++I+ +  +++N+ GRT C LGDAAA P  G +K FR   E+ ++    C + 
Sbjct: 374 VDKDINNIQYIAENMLGRTFCPLGDAAAMPTIGFVKKFRKEFEDHLN-GKGCPYH 427


>gi|318606464|emb|CBY27962.1| NADH-ubiquinone oxidoreductase chain F [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 455

 Score =  457 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 29  QPVWLDEYRSKNGYVGAEKALKSMAAPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 88

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 89  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 148

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 149 HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 208

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 209 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 268

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 269 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 326

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 327 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 386

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 387 PGDIETLEQLCRFLGSGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 432


>gi|331658365|ref|ZP_08359327.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA206]
 gi|331056613|gb|EGI28622.1| NADH oxidoreductase (quinone), F subunit [Escherichia coli TA206]
          Length = 421

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 167/394 (42%), Positives = 233/394 (59%), Gaps = 5/394 (1%)

Query: 28  HWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
            ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE
Sbjct: 10  GYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADE 69

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    +L+ A+ E   +
Sbjct: 70  MEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEA 129

Query: 147 GLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G +G P
Sbjct: 130 GLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKP 189

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P   E     T  E+
Sbjct: 190 TCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREI 249

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           +E + GG+R G     A  PGG+    L    +    M+++ + + GS LGTA  + +D 
Sbjct: 250 LEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDH 307

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
             +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +
Sbjct: 308 EINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFL 367

Query: 386 -EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 368 GPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 401


>gi|218961474|ref|YP_001741249.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
           bidirectional hydrogenase), subunit beta (hymB-like)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730131|emb|CAO81043.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
           bidirectional hydrogenase), subunit beta (hymB-like)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 520

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 159/413 (38%), Positives = 249/413 (60%), Gaps = 6/413 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62
           ++RI   N   +  +++ D +  G +  ++K L     + II EVK SGL+GRGGA F  
Sbjct: 107 ENRIVLRNSGIIDPENIDDYIGAGGYVALEKALTNMQPNDIIAEVKKSGLKGRGGAAFPA 166

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSF          Y+VVNADE EPGT KDR IM  +PH L+EG ++ + A+GA  A+
Sbjct: 167 GLKWSFTS-ALDVPQKYVVVNADEGEPGTFKDRLIMEGDPHQLLEGIILCARAVGASKAY 225

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+RGE+      L+ A+ + Y  G+LG N    G+D+DI +  GAGAY+CGEETAL+ES
Sbjct: 226 IYIRGEYKLCIARLEKAIKQAYDYGILGKNIFDSGFDLDIELKIGAGAYVCGEETALIES 285

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEG +G PR KPPFP   GL+  PT VNNVE++A VP I+ +GA  +  +G  +  GTK+
Sbjct: 286 LEGNRGTPRWKPPFPGVEGLWKAPTIVNNVETLANVPFIIAKGADEFLQYGTPDCPGTKV 345

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           ++I G V YP   E  M  T   +I  + GG++ G+    A + GG++   LP  ++   
Sbjct: 346 YTILGDVAYPGLCEVDMGTTLRTIINDYAGGMKKGF-RFKAALVGGAAGVILP-DRLLDV 403

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MD+  L +  + LG+ A++V++    I+  +W +  F++HESCG+C+PC+ GT  + ++
Sbjct: 404 KMDFTSLNQYSAVLGSGAILVLNEHQSIVDLLWSILRFFRHESCGKCSPCKNGTQQLYQL 463

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           + ++ KG     +++L+  +++ ++  + CALG +    ++  I+NF     E
Sbjct: 464 ISKIRKGNGTMEDVNLMLLIAETMQQTSFCALGQSPIMAVRSAIENFTDEFIE 516


>gi|255037830|ref|YP_003088451.1| NADH-quinone oxidoreductase, F subunit [Dyadobacter fermentans DSM
           18053]
 gi|254950586|gb|ACT95286.1| NADH-quinone oxidoreductase, F subunit [Dyadobacter fermentans DSM
           18053]
          Length = 446

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 198/420 (47%), Positives = 259/420 (61%), Gaps = 16/420 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           ++      +G +  V+K ++    + ++ E K SG+RGRGGAGF  GMKW F+ K     
Sbjct: 16  ETFDVYRKQGGYTAVEKAIKTMTPEEVVEEAKKSGVRGRGGAGFPMGMKWGFLAK-PEGV 74

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLV NADESEPGT KD  +M+  PH LIEG +I+SFA+GA+ +FIYVRGE +     L
Sbjct: 75  PRYLVCNADESEPGTFKDHHLMKCIPHLLIEGMIISSFALGANKSFIYVRGELMYVIRIL 134

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ E  A G LG N    GYD++++V  G GAYICGEETALLESLEGK+G PR KPPF
Sbjct: 135 EKAIAEAKAQGFLGKNILGSGYDLELVVQPGGGAYICGEETALLESLEGKRGNPRNKPPF 194

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT VNNVESI+ +P I+  G   Y+  G   + GTKL S SGH+  P   E
Sbjct: 195 PAVKGLYQSPTVVNNVESISNMPWIINNGGDAYAQIGIGRSTGTKLISASGHIQKPGVYE 254

Query: 256 ESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR------GAIMDYDG 307
             + ++ +E +  +++CGGIR G   L A++ GGSSVP LPA  +         +M Y+ 
Sbjct: 255 IELGVSVEEFLNSDEYCGGIRKGHH-LKALVAGGSSVPILPANLIMKTAAGEDRLMTYES 313

Query: 308 LK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           L       G+ LG+   IV D +  I++  W  S FY HESCGQC+PCREGTGWM +V+ 
Sbjct: 314 LSDGGFATGTMLGSGGFIVFDETACIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKVLH 373

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           R+  G     +IDLL ++SK IEG TIC LGDAAAWP+   I++FR      I       
Sbjct: 374 RIEHGHGSMHDIDLLVDISKKIEGNTICPLGDAAAWPVASAIRHFRDEFVWHITNPQEAT 433


>gi|78222328|ref|YP_384075.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78193583|gb|ABB31350.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Geobacter metallireducens GS-15]
          Length = 569

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 156/425 (36%), Positives = 245/425 (57%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            L  Q ++   N   +  + + + ++ G +  +   L E   D +  EV  SGLRGRGGA
Sbjct: 119 FLARQMKVVLANSGSINPERVEEYVAAGGYGALAHALHELTPDDVCREVSVSGLRGRGGA 178

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+   K   +   Y+V N DE +PG   DR IM  +PH ++EG  +A +AIGA
Sbjct: 179 GYPTGVKWNLARKANGE-RKYVVANGDEGDPGAYMDRSIMESDPHRILEGMALAGYAIGA 237

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              FIYVRGE+      L+AA+     +GLLGS      ++  I +  GAGA++CGEET+
Sbjct: 238 EQGFIYVRGEYYLAGRRLEAAIRAAERAGLLGSRVFGSNFNFRIDIRTGAGAFVCGEETS 297

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+ G++GQPR +PP+PA  GL+GCPT +NNVE++A VP I+ +G +WY+G G   ++
Sbjct: 298 LMASIMGRRGQPRQRPPYPAQQGLWGCPTLINNVETLATVPAIMGKGGNWYAGIGSAGSK 357

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+++++G V     +E  M  T  E++    GGI  G     A   GG S  C+P+G+
Sbjct: 358 GTKVYALAGQVEIAGLIEVPMGTTLREVVFDIGGGIP-GGKRFKAAQSGGPSGGCIPSGE 416

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ ++ +G+ +G+  +I+MD ++ +         F + ESCG+C PCR GT  
Sbjct: 417 L-DTPLDYESMQRVGTIMGSGGLIIMDETSCMPDVASFFLDFCRDESCGKCVPCRVGTVE 475

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M R++ R+  G A   ++  L E+ + +   ++C LG  A  P+   ++ FR    E I 
Sbjct: 476 MHRLLRRITGGTATMDDLAKLEELCELVGAASLCGLGMTAPNPVLSTLRYFRDEYVEHIS 535

Query: 418 QYHRC 422
           + HRC
Sbjct: 536 R-HRC 539


>gi|118581916|ref|YP_903166.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118504626|gb|ABL01109.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
          Length = 488

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 147/424 (34%), Positives = 232/424 (54%), Gaps = 7/424 (1%)

Query: 3   TDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGF 60
             Q RI T N   +  +++ D +    ++ +   +  G    +I ++K SGLRGRGG GF
Sbjct: 4   KKQLRIATRNCGFIDPENIEDYIGVRGYEALASAITNGTPAGVIEQMKKSGLRGRGGGGF 63

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+F     +D   Y+V NADE +PG   DR ++  +PH+++E   I  +AIGA  
Sbjct: 64  PTGVKWAFAAANQAD-QKYVVCNADEGDPGAFMDRALLEGDPHSIVEAMAICGYAIGASI 122

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
             +Y+R E+    + L  ++++    GLLG N    G++ DI + +GAGA++CGEETAL+
Sbjct: 123 GVVYIRAEYPLAIKRLIKSIEDARDYGLLGRNILGTGFNFDIELKYGAGAFVCGEETALI 182

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG +G+P  KPPFPA+ G +G PT VNNVE++A +P IL +GA W+S  G EN++GT
Sbjct: 183 RSMEGSRGEPYTKPPFPASAGYWGKPTIVNNVETLANIPPILVKGADWFSSIGTENSKGT 242

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F+++G +     +E  M IT  E+I +  GG         AV  GG S   L +  + 
Sbjct: 243 KVFALAGKITNVGLIEVPMGITLGEIIFEIGGGCP-NGKQFKAVQTGGPSGGALTSRDI- 300

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DYD L   GS +G+  +IVMD    ++        F   E+CG+CTPCR G+  + 
Sbjct: 301 DVPIDYDNLIARGSMMGSGGMIVMDEDNCMVDVAKFFLDFTMDETCGKCTPCRIGSKRLH 360

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ R+ +G     +++ L  +   I+   +C  G     P+   I+ F       +   
Sbjct: 361 EILCRITQGEGTLEDMENLQCLGATIKDTALCGFGQTMPNPVLSTIRTFMDEYRAHVVD- 419

Query: 420 HRCN 423
            +C 
Sbjct: 420 KKCP 423


>gi|300087354|ref|YP_003757876.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527087|gb|ADJ25555.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 622

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 158/426 (37%), Positives = 241/426 (56%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
           M   Q RI   N   +    LS  ++RG +  + + L     + +I E+ ASGLRGRGGA
Sbjct: 135 MYRAQRRIALRNCGHINPLRLSHYLARGGYAGLHRALTGLSPEQVIEEITASGLRGRGGA 194

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW F  +     P Y++ NADE +PG   DR I+  +PH+++EG +I+ +A+GA
Sbjct: 195 GFPTGRKWQFCREAP-GAPKYVICNADEGDPGAFMDRSILEGDPHSVVEGLIISGYAVGA 253

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+     +LQ AV +   +GLLG N    G+D D+ +  GAGA++CGEETA
Sbjct: 254 SRGYVYVRAEYPLAVSTLQQAVAQARKAGLLGRNILGSGFDFDVEIKEGAGAFVCGEETA 313

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG++G PR +PP+PA  GL+G PT +NNV+++A+   I+   A+ ++  G   +R
Sbjct: 314 LIASLEGRRGMPRPRPPYPAVSGLFGRPTNINNVKTLAMAAYIMAGHAADFAAMGTGQSR 373

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT +F+++G+V     VE  M     E++    GGI      L AV  GG S  CLPA  
Sbjct: 374 GTCVFALAGNVRRMGLVEVPMGTPLGEVVFDIGGGIPEN-RQLKAVQIGGPSGGCLPAEA 432

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +DY+ L   G+ +G+  ++VMD +T ++        F + ESCG+C PCR GT  
Sbjct: 433 -TDVGLDYESLSLSGAIMGSGGMVVMDENTCMVDVARYFLTFVQAESCGKCVPCRLGTRQ 491

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+  G  +  +I+ L  ++  I+  ++CALG  A  P+   ++ F       I 
Sbjct: 492 MLAILERITAGDGRPEDIETLEGLAAQIKKTSLCALGGTAPNPVLTTLRYFHDEYTAHIR 551

Query: 418 QYHRCN 423
              RC 
Sbjct: 552 D-RRCP 556


>gi|238763930|ref|ZP_04624887.1| NADH-quinone oxidoreductase subunit F [Yersinia kristensenii ATCC
           33638]
 gi|238697898|gb|EEP90658.1| NADH-quinone oxidoreductase subunit F [Yersinia kristensenii ATCC
           33638]
          Length = 445

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 171/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 18  QPVWLDEYRSKNGYLGAEKALKGMAPPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 77

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 78  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 137

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +G+LG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 138 HLRRAIAEATEAGMLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 197

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 198 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 257

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    I+  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 258 GLWELPFGISAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 315

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 316 GSRLGTALAMAVDHEIGMVPLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERGEGQ 375

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 376 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 421


>gi|238759966|ref|ZP_04621119.1| NADH-quinone oxidoreductase subunit F [Yersinia aldovae ATCC 35236]
 gi|238701793|gb|EEP94357.1| NADH-quinone oxidoreductase subunit F [Yersinia aldovae ATCC 35236]
          Length = 440

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 172/409 (42%), Positives = 242/409 (59%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 13  QPVWLDEYRSKNGYVGAEKALKSMAAPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 73  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 133 HLRRAISEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVDWYQGITAGKSNDAGTKLMGFSGRVKNP 252

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    I+  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 253 GLWELPFGISAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 311 GSRLGTALAMAVDHEIGMVPLVRNLEEFFSRESCGWCTPCRDGLPWSVKILRALERGEGQ 370

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I   
Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIANK 419


>gi|153007185|ref|YP_001381510.1| NADH-quinone oxidoreductase subunit F [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030758|gb|ABS28526.1| NADH-quinone oxidoreductase, F subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 441

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 208/423 (49%), Positives = 279/423 (65%), Gaps = 8/423 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  I T  +G     +L    + G +  +DK L      I++EVK S LRGRGGAGF+TG
Sbjct: 3   ETLILTRRWGKPDSAALRTYRADGGYAALDKALGMEPAAIVDEVKRSNLRGRGGAGFATG 62

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW+F+PK    RP YL VNADESEPGT KDR I+ H+PH LIEG  I  +A+  H A++
Sbjct: 63  LKWTFLPKDI--RPRYLTVNADESEPGTFKDRYIIEHDPHMLIEGIAITCYALDIHLAYV 120

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLES 181
           Y+RGEF R+   L+AA++E  A+G+LG     K  +D+D+ VH GAGAYICGEE+ALLES
Sbjct: 121 YIRGEFARQARILEAAIEEARAAGILGQRLLGKKDFDLDVFVHRGAGAYICGEESALLES 180

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGKKG PRLKPPFPA VGL+G PT +NNVE+IA VP I+  G   ++G G   + GT+L
Sbjct: 181 LEGKKGYPRLKPPFPAVVGLWGKPTIINNVETIANVPWIVANGGDAFAGLGVGKSGGTRL 240

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F +SGHVN P   E+ +     +LI + CGGI GG   + AVIPGGSS P L   ++   
Sbjct: 241 FGVSGHVNRPGVFEKPVDYNLKKLIMEDCGGIPGGRK-VKAVIPGGSSSPVLRGDEI-DI 298

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +++D +K  GS  G+  VIV D ST +++A+ R+S FY  ESCGQCTPCREGT WM  +
Sbjct: 299 SLEFDAVKAAGSMSGSGGVIVFDDSTCMVRALARISKFYAEESCGQCTPCREGTSWMEGI 358

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +E++  G     ++  L +++ NI G+TICALGDAA+ P+Q  +K FR      +++  R
Sbjct: 359 VEKIEHGHGTAADVAKLEQIAGNIGGQTICALGDAASMPVQSFVKKFRDEFLRHVEE-RR 417

Query: 422 CNF 424
           C F
Sbjct: 418 CPF 420


>gi|304312244|ref|YP_003811842.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1]
 gi|301797977|emb|CBL46199.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1]
          Length = 423

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 164/424 (38%), Positives = 234/424 (55%), Gaps = 7/424 (1%)

Query: 6   DRIFTNLYG--LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           +++ T   G  +    L D    G ++     L      +++ VKAS LRGRGGAGF TG
Sbjct: 2   EKVLTRHIGQGMNPPRLVDYQQSGGYEGFRNALRMKPAEVVDLVKASNLRGRGGAGFPTG 61

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+P     +  Y++ NADE EPGT KDR ++  +PH  +EG +IA+ A+ A   +I
Sbjct: 62  MKWSFVPPGEPGQVRYVIANADEMEPGTYKDRWLLEGDPHQFLEGMMIAAHAVQALTGYI 121

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           ++R E+      LQ A++E   + LLG N    G++  + +H  AG YICGEETAL+ SL
Sbjct: 122 FLRCEYTLAARRLQEAIEENTRANLLGKNILGSGFNFSLHLHSSAGRYICGEETALINSL 181

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG++  PR KPPFP   GL+G PT VNNVE+   +P ILR G  W+ G G   + GTK+F
Sbjct: 182 EGRRAVPRAKPPFPQVSGLWGKPTVVNNVETFCNLPHILRHGPEWFIGLGLVKDAGTKIF 241

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
             SG V  P   E  M     E+ EK+ GG++ G+      +PGG S   L   Q     
Sbjct: 242 GASGRVKTPGAWELPMGTPIREIFEKYAGGMQDGY-RFRGFLPGGGSTDFL-VEQHLDLP 299

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           M+YD + + GS +GT  +IV+D  T  +  +  L  F+  ESCG CTPCR+G      ++
Sbjct: 300 MEYDVIGKAGSRMGTGQLIVLDDRTCPVAMVLNLVRFFAQESCGWCTPCRDGLPHAGHIL 359

Query: 363 ERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
             + +G  Q R+++ L   ++ +  G T CAL   A  P+Q  +K FR   E  I Q   
Sbjct: 360 MEIEQGRGQARDLEKLEGFTRFLAPGNTYCALAPGAVEPLQSALKYFREDFERHIQQ-KG 418

Query: 422 CNFQ 425
           C ++
Sbjct: 419 CPYR 422


>gi|293191721|ref|ZP_06609278.1| NADH oxidoreductase, F subunit [Actinomyces odontolyticus F0309]
 gi|292820493|gb|EFF79475.1| NADH oxidoreductase, F subunit [Actinomyces odontolyticus F0309]
          Length = 434

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 201/418 (48%), Positives = 251/418 (60%), Gaps = 12/418 (2%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I TN +G +   +L    SRG +  ++K        I+  VK SGLRGRGGAGF +G+KW
Sbjct: 14  ILTNGWGEERSWTLDSYRSRGGYQGLEKARTMEPADIVQAVKDSGLRGRGGAGFPSGLKW 73

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YLVVNADESEPGTCKD  ++   PH LIEG  I S AIG   AF+Y+R
Sbjct: 74  SFLPPADGG-PRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE       L  AV E   +G+LG       D+ I  H GAGAYICGEETALL+SLEG++
Sbjct: 133 GEVTHVYRRLLEAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GLY  PT VNNVE+IA V  I R    W++  G E ++G  +FS+SG
Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPKWFASMGTEKSKGHGIFSVSG 245

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HVN P   E    IT  ELIE   G        L    PGGSS P     ++   ++DY+
Sbjct: 246 HVNNPGQFEAPFGITMRELIEMAGG--IRDGHKLKFWTPGGSSTPIFTEDEL-DTLLDYE 302

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS LGT A+ V D +  +++ I R S FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +G  +  ++DLL E++ NI GR+ C LGDAAA PI   IK FR   E  +    R  F
Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420


>gi|189219241|ref|YP_001939882.1| NAD-dependent formate dehydrogenase beta subunit [Methylacidiphilum
           infernorum V4]
 gi|161075751|gb|ABX56623.1| formate dehydrogenase beta subunit [Methylacidiphilum infernorum
           V4]
 gi|189186099|gb|ACD83284.1| NAD-dependent formate dehydrogenase beta subunit [Methylacidiphilum
           infernorum V4]
          Length = 522

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 156/413 (37%), Positives = 229/413 (55%), Gaps = 5/413 (1%)

Query: 2   LTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q R IF  +      SL   +  G +  + K +E G+  +I+EV  SGLRGRGGA F
Sbjct: 99  LKNQKRLIFERIGRNDPLSLDSYVECGGFIGLRKAIEWGQSKVIDEVYKSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW    +  S    ++V NADE + GT  DR +M  +P  LIEG +IA FA+GA  
Sbjct: 159 PTGIKWKTTWQATS-SQKFIVCNADEGDSGTFSDRMVMEGDPFLLIEGMMIAGFAVGADK 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E L  A+  C ++GLLG       +  D+ V  GAGAY+CGEETALL
Sbjct: 218 GYIYLRSEYPLAYEILNEAIFICKSAGLLGKRIFGSSFSFDLEVFLGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEGK+G  R +PP PA  GL+G PT +NNV +++ VP IL  GA  Y+  G   ++GT
Sbjct: 278 DSLEGKRGMVRPRPPLPAVKGLWGKPTVINNVITLSSVPWILSHGAEAYASLGVNRSKGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               +SG++ YP  VE    I+  ELI    GG R G   L A+  GG   P LP   + 
Sbjct: 338 LPVQLSGNLQYPGLVEIPFGISLKELIYGFGGGTRSGRP-LKAIQIGGPLGPYLP-DSLL 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ L ++   +G   ++  D S ++         F   ESCG+CTPCR G+   M
Sbjct: 396 DIPLDYEELSKIKGIVGHGGIVAFDDSANLAHMAHYAMEFCAEESCGKCTPCRIGSTRGM 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++E+++ G   +RE++LL+++   +   ++C LG    +P+   ++ F    
Sbjct: 456 ELIEKIIMGKGSRRELELLFDLCDTMLNASLCGLGGMTPFPVLSALRYFPEDF 508


>gi|119714789|ref|YP_921754.1| NADH-quinone oxidoreductase, F subunit [Nocardioides sp. JS614]
 gi|119535450|gb|ABL80067.1| NADH dehydrogenase subunit F [Nocardioides sp. JS614]
          Length = 440

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 206/424 (48%), Positives = 269/424 (63%), Gaps = 15/424 (3%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            DQ+R           +L+   SRG +  VD       D +I+ VK SGLRGRGGAGF T
Sbjct: 17  WDQER---------SWTLAAYESRGGYRAVDTAFAMEPDAVIDAVKESGLRGRGGAGFPT 67

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F+P+  + RP YLVVNADESEPGTCKD  +M   PHTL+EG +I+S+AI A+ AF
Sbjct: 68  GMKWGFIPQD-NPRPKYLVVNADESEPGTCKDIPLMMASPHTLVEGVIISSYAIRANKAF 126

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+RGE +     +Q AV E YA+G LG+N    G+D+D++VH GAGAYICGEETALLE 
Sbjct: 127 IYIRGEVLHVIRRVQRAVQEAYAAGHLGTNIHGSGFDLDVVVHAGAGAYICGEETALLEG 186

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEG++GQPRL+PPFPA  GLY  PT +NNVESI+ VP+I+ RG +W++  G E ++G  +
Sbjct: 187 LEGRRGQPRLRPPFPAVAGLYASPTVINNVESISSVPSIIGRGHAWFASMGTEKSKGVGI 246

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           FS+SGHV  P   E  + IT   LI+   G        L    PGGSS P L A  +   
Sbjct: 247 FSLSGHVKRPGQYEAPLGITLRTLIDLAGG--IREGHELKFWTPGGSSTPLLTAEHL-DV 303

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D++G+   GS LGT A+ + D S  +++A+ R S FYKHESCG+CTPCREGT W+++V
Sbjct: 304 PLDFEGVGSAGSMLGTRALQIFDDSVCVVRAVLRWSEFYKHESCGKCTPCREGTWWLVQV 363

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +  L KG   + ++DLL +   NI GR+ CAL D A  PI   I+ FR      +     
Sbjct: 364 LTALEKGDGTEEDLDLLLDQCDNILGRSFCALADGATSPIVSSIQFFRDEYVAHLTHGG- 422

Query: 422 CNFQ 425
           C F 
Sbjct: 423 CPFD 426


>gi|292492184|ref|YP_003527623.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus
           Nc4]
 gi|291580779|gb|ADE15236.1| NADH-quinone oxidoreductase, F subunit [Nitrosococcus halophilus
           Nc4]
          Length = 430

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 157/415 (37%), Positives = 235/415 (56%), Gaps = 7/415 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72
            +   +      G +  + K L E     +   VK S LRGRGGAGF TGMKWSF+P   
Sbjct: 18  REPLDIKQYQQVGGYQALRKALREMSPQEVQQTVKDSKLRGRGGAGFPTGMKWSFIPMGD 77

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            +  P YL+ NADE EPGT KDR +M  +PH L+E  +++S+A  A  A+I++R E+   
Sbjct: 78  DAPHPKYLIANADEMEPGTFKDRLLMEGDPHQLLEAMIVSSYATQADVAYIFLRDEYKLA 137

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              L+ A  E    GLLG +    G+ ++  +H  AG YICGEETAL+ SLEGK+  PR 
Sbjct: 138 AHRLKQAAQEAREQGLLGKHILGSGFSLEFHIHTSAGRYICGEETALVTSLEGKRAIPRQ 197

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPP+P   GL+G PT VNNVE++  VP I+  GA WY    R  + GTK++  SG V  P
Sbjct: 198 KPPYPQTCGLWGKPTVVNNVETLCNVPHIINHGAEWYQNLSRSEDGGTKIYGTSGRVKRP 257

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M     E++E++ GG++ G+     ++PGG+S   L    +    MD+D + ++
Sbjct: 258 GAWELPMGTPIREILEEYAGGMQEGY-TFRGLLPGGASTDFLVEEHLE-TPMDFDAVMKV 315

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS +GT  +I++D  T  +  +  L  F+  ESCG CTPCR+G  W+  +++ + +G  Q
Sbjct: 316 GSRMGTGGMIILDDKTCPVAMVLNLERFFAQESCGWCTPCRDGLPWVAHILQAIEEGRGQ 375

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             ++++L   ++ +  G+T C     A  P+Q  +K FR   E+ I + H C ++
Sbjct: 376 MEDLEILEMHTQFLGPGKTFCMHAPGAMEPLQSALKYFREDFEQHIREQH-CPWR 429


>gi|225175128|ref|ZP_03729124.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225169304|gb|EEG78102.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 630

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 143/421 (33%), Positives = 225/421 (53%), Gaps = 5/421 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           ++  I      +  + +   ++   +  +   L+K    +I EVK++ LRGRGGAGF  G
Sbjct: 132 EEKLILEQCGFINPEDIDHYLAVEGYRGLVGALDKSSAAVIEEVKSARLRGRGGAGFPAG 191

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW    +   D+  Y+V NADE +PG   DR I+   PH ++EG  I  +A+GA   +I
Sbjct: 192 VKWEKCSQQD-DKEKYVVCNADEGDPGAFMDRAILESNPHLVLEGMAICGYAVGASKGYI 250

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+ +    L+ A+ +    GLLG N     +  DI +  G+GA++CGE TAL+ S+
Sbjct: 251 YVRAEYPKATSRLRIAISQAKEKGLLGKNILGSDFSFDIEIFEGSGAFVCGEGTALINSM 310

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
            G  G P  +PP  A  GLYG PT +NNV++ A VP I++ GA W+   G E N GT +F
Sbjct: 311 AGNMGIPETRPPRMAVSGLYGKPTVLNNVKTFAYVPGIVKNGAHWFRQKGTEQNPGTAVF 370

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           ++ G +     VE  M  T   LI     GI        AV  GG S  CLP   +    
Sbjct: 371 ALVGKIKNSGLVEVPMGTTLRRLIYDVGEGIPND-KKFKAVQIGGPSGGCLPEDAL-DIP 428

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D+D L + G+ +G+  ++V+D +  ++        F +HESCG+CT CR GT  M+ ++
Sbjct: 429 IDFDSLHDAGAIMGSGGIVVLDENDCMVTVARYFLEFTQHESCGKCTFCRLGTKHMLDIL 488

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             + +G     ++DLL E+++++   ++C LG  A  P+   ++ FR   E  +++  RC
Sbjct: 489 TAITQGKGSLSDLDLLLELAEDVRDGSLCNLGGTAPNPVLTTLRYFRDEYEAHLEE-GRC 547

Query: 423 N 423
            
Sbjct: 548 P 548


>gi|302864906|ref|YP_003833543.1| NADH-quinone oxidoreductase subunit F [Micromonospora aurantiaca
           ATCC 27029]
 gi|302567765|gb|ADL43967.1| NADH-quinone oxidoreductase, F subunit [Micromonospora aurantiaca
           ATCC 27029]
          Length = 438

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/403 (47%), Positives = 248/403 (61%), Gaps = 5/403 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               L        +  + K L+   D +I  +K SGLRGRGGAGF TG+KW F+P+    
Sbjct: 24  DAWRLGTYEKLDGYAALRKALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADE EPGTCKD  +M H+PH+L+EG +IAS+AI A+ A+IY+RGE +     
Sbjct: 83  KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L++AVDE YA G LG N    G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PP
Sbjct: 143 LRSAVDEAYAKGYLGRNVLGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNV +IA VP I+  GA W+   G E + G  ++S+SG +  P   
Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRIAEPGQY 262

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E SM IT  ELIE   G       NL    PGGSS P L A  +    +D++G+   GS 
Sbjct: 263 ECSMGITLRELIELAGGM--KPGHNLKFWTPGGSSTPLLTAEHL-DVPLDFEGVAAAGSI 319

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A  +       + A +R   FY HESCG+CTPCREG  WM+RV  R++ G     +
Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHED 379

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +D L +   NI GR+ C LGD A   +   +K F+    + I+
Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFKQDYLDYIE 422


>gi|188995984|ref|YP_001930235.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931051|gb|ACD65681.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 523

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 160/414 (38%), Positives = 230/414 (55%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
              +Q RI F  +  +   S+ D  S G +  + K +    + II E+K SGLRGRGGAG
Sbjct: 101 FFKNQTRITFERVGLVDPLSIKDYQSNGGFLGLKKAISMKSEEIIEEIKKSGLRGRGGAG 160

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + K  SD   Y+V NADE + GT  DR IM  +P  LIEG VIA  A+GA 
Sbjct: 161 FPTGIKWETVFKTGSD-KKYVVCNADEGDSGTFSDRMIMESDPFLLIEGMVIAGLAVGAD 219

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+R E+   +E L  A+D  Y +  LG N    G D D+ V+ GAG+Y+CGEETAL
Sbjct: 220 EGYIYLRSEYPLAKEVLTKAIDLAYKNRYLGKNILGSGKDFDLEVYVGAGSYVCGEETAL 279

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP+PA  GL+  PT +NNV ++A VP I+R G   Y  +G   +RG
Sbjct: 280 LESLEGKRGVVRPKPPYPAINGLWNKPTLINNVNTLATVPWIIREGGDKYFNYGVGKSRG 339

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    +SG+V +P  VE    I+  +++    GG + G     A+I GG     +P   M
Sbjct: 340 TIAIQLSGNVKHPGLVEVPFGISIKDIVYGFGGGTKTGKKVKAALI-GGPFGIYIPES-M 397

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ L ++G  +G  +++V D   D+         F   ESCG+C PCR G+   
Sbjct: 398 FDISIDYESLSKIGGTIGHGSIVVFDEEADLKYLARFAMEFCFIESCGKCAPCRIGSIRG 457

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + ++++L+     +R I +  ++S+ +   ++C LG  A  PI  L K+F    
Sbjct: 458 LEILDKLLNQGRDERLISMFVDLSEVMINTSLCGLGGMAPKPILSLFKHFPEEF 511


>gi|300717647|ref|YP_003742450.1| NADH dehydrogenase I chain F [Erwinia billingiae Eb661]
 gi|299063483|emb|CAX60603.1| NADH dehydrogenase I chain F [Erwinia billingiae Eb661]
          Length = 448

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 167/404 (41%), Positives = 235/404 (58%), Gaps = 5/404 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q     +  S+  +   DK L+   +D I+  VK SGL+GRGGAGFSTG+KWS MPK  S
Sbjct: 24  QPVFFDEYRSKNGYAGADKALKTMSQDEIVAAVKDSGLKGRGGAGFSTGLKWSLMPKDES 83

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+  +  +I++RGE+I    
Sbjct: 84  MNIRYLLCNADEMEPGTYKDRLLMEQMPHQLVEGMLISAFALKTYRGYIFLRGEYIEAAV 143

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +G LG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 144 NLRRAIAEATEAGYLGKNILGTGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 203

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA+ G +G PT VNNVE+++ VP IL  G  WY G    ++ GTK+   SG V  P  
Sbjct: 204 PFPASAGAWGKPTCVNNVETLSNVPAILANGVDWYKGISTSDDTGTKMMGFSGRVKNPGV 263

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M++  + + GS
Sbjct: 264 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTESHL-DLPMEFASIGKAGS 321

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +   Q  
Sbjct: 322 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERKEGQPG 381

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 382 DIETLLQLCRQLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 425


>gi|297616330|ref|YP_003701489.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144167|gb|ADI00924.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
          Length = 407

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 163/417 (39%), Positives = 250/417 (59%), Gaps = 11/417 (2%)

Query: 2   LTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + ++ R+    YG +   ++ D ++ G + +++K     +  +I EVK SGLRGRGGAGF
Sbjct: 1   MAEELRVVLRNYGKINPLNIDDYINAGGYKSLEKARSMSQMDVIQEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           + G KW F  +  +D   Y++ NADE EPGT KDR IM  +PH+++EG  I  +AIGA+ 
Sbjct: 61  NAGQKWMFAYQAQAD-QKYVICNADEGEPGTYKDRIIMESDPHSVLEGMAICGYAIGANK 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY RGE+    + L  A+ +  A G+LG         DI V  GAGAY+CGEETAL+E
Sbjct: 120 GYIYCRGEYPYVVDILNTAIAQAKAKGVLGE-------FDIEVRMGAGAYVCGEETALIE 172

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG +G+PR KPPFP   GL+G P+ VNNVE+ A +  IL +GA WY+  G  +  GTK
Sbjct: 173 SIEGSRGEPRYKPPFPPVSGLWGKPSIVNNVETFANIAIILEKGADWYASLGAPSYPGTK 232

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           + +++G V     +E   + T  E++    GGI GG      V  GG+S   +P   +  
Sbjct: 233 VLTLTGDVVNKKFIEVPTNTTIREVVYGFGGGIPGGKKFKA-VQIGGTSGGFIPES-LLD 290

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D +  +G+ LG+ AV+VMD + DI+  + R++ F++HESCG+C PCREGT  M +
Sbjct: 291 TPIDFDSMAAIGATLGSGAVLVMDETRDIVDVVERIAKFFEHESCGKCAPCREGTMRMYK 350

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +M ++ KG    +++ L+  + + +    +C LG AA  P+   IK+FR   + ++ 
Sbjct: 351 LMSKVNKGQGTAKDVALMERLGRVMSVACLCGLGQAAPTPVLTTIKHFRADYDAKLQ 407


>gi|297192783|ref|ZP_06910181.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151494|gb|EFH31198.1| NADH dehydrogenase subunit I F [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 456

 Score =  455 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 195/410 (47%), Positives = 256/410 (62%), Gaps = 6/410 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             +L+       ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    +
Sbjct: 36  SWTLATYRRHDGYEGLRKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GDGK 94

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA +AI +  AFIY+RGE +     L
Sbjct: 95  PHYLVVNADESEPGTCKDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRL 154

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             AV E Y +G LG N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+PPF
Sbjct: 155 HEAVREAYEAGFLGKNILGSGLDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 214

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGHV  P   E
Sbjct: 215 PAVAGLYACPTVVNNVESIASVPAILHKGKDWFRSMGSEKSPGFTLYSLSGHVASPGQYE 274

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS L
Sbjct: 275 APLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPMFTDEHL-DVPLDYEGVGAAGSML 331

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G     ++
Sbjct: 332 GTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGNGVMSDL 391

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           D L +++ NI G++ CALGD AA PI   +K FR   E+ I Q   C F 
Sbjct: 392 DKLNDIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITQGG-CPFD 440


>gi|315501191|ref|YP_004080078.1| NADH-quinone oxidoreductase, f subunit [Micromonospora sp. L5]
 gi|315407810|gb|ADU05927.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. L5]
          Length = 438

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 191/403 (47%), Positives = 248/403 (61%), Gaps = 5/403 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               L        +  + K L+   D +I  +K SGLRGRGGAGF TG+KW F+P+    
Sbjct: 24  DAWRLGTYEKLDGYAALRKALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADE EPGTCKD  +M H+PH+L+EG +IAS+AI A+ A+IY+RGE +     
Sbjct: 83  KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L++AVDE YA G LG N    G+D+D++VH GAGAYICGEETALL+SLEG +GQPRL+PP
Sbjct: 143 LRSAVDEAYAKGYLGRNVLGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNV +IA VP I+  GA W+   G E + G  ++S+SG +  P   
Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRIADPGQY 262

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E SM IT  ELIE   G       NL    PGGSS P L A  +    +D++G+   GS 
Sbjct: 263 ECSMGITLRELIELAGGM--KPGHNLKFWTPGGSSTPLLTAEHL-DVPLDFEGVAAAGSI 319

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A  +       + A +R   FY HESCG+CTPCREG  WM+RV  R++ G     +
Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHED 379

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +D L +   NI GR+ C LGD A   +   +K F+    + I+
Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFKQDYLDYIE 422


>gi|238794603|ref|ZP_04638210.1| NADH-quinone oxidoreductase subunit F [Yersinia intermedia ATCC
           29909]
 gi|238726089|gb|EEQ17636.1| NADH-quinone oxidoreductase subunit F [Yersinia intermedia ATCC
           29909]
          Length = 439

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 173/406 (42%), Positives = 242/406 (59%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +   +K L+      ++N VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 13  QPVWLDEYRSKNGYLGAEKALKGMTAPDVVNLVKDAGLKGRGGAGFSTGLKWSLMPKDES 72

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 73  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 132

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 133 HLRRAISEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 192

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 193 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVDWYQGITAGKSNDAGTKLMGFSGRVKNP 252

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    I+  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 253 GLWELPFGISAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 310

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 311 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 370

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 371 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 416


>gi|85059575|ref|YP_455277.1| NADH dehydrogenase I subunit F [Sodalis glossinidius str.
           'morsitans']
 gi|84780095|dbj|BAE74872.1| NADH dehydrogenase I subunit F [Sodalis glossinidius str.
           'morsitans']
          Length = 451

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 174/413 (42%), Positives = 237/413 (57%), Gaps = 9/413 (2%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
            Q   L +  S+  +    K L    +D I+  VK SGL+GRGGAGFSTG+KWS MPK  
Sbjct: 22  HQPVWLDEYQSKNGYVGARKALSGMAQDDIVTLVKDSGLKGRGGAGFSTGLKWSLMPKDP 81

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +    YL+ NADE EPGT KDR +M   PH L+EG +IA+FA+ A+  +I++RGE+I   
Sbjct: 82  AMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLIAAFALKAYRGYIFLRGEYIEAA 141

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
            +L+ A+ E   +G LG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR K
Sbjct: 142 ANLRRAIAEATEAGWLGKNILGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSK 201

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN----RGTKLFSISGHV 248
           PPFPA+ G +G PT VNNVE++  VP IL  G  WY G     +     GTKL   SG V
Sbjct: 202 PPFPASAGAWGKPTCVNNVETLCNVPAILEHGVDWYQGITAGKSNSNDAGTKLMGFSGRV 261

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E    IT  E++E + GG+R G   L A  PGG+    L    +    MD++ +
Sbjct: 262 KNPGVWELPFGITAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLIQDHL-DLPMDFENI 319

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            + GS LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L  G
Sbjct: 320 GKAGSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKLLRALESG 379

Query: 369 IAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             Q  +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I   H
Sbjct: 380 KGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFRSEFEAGISVEH 432


>gi|145596571|ref|YP_001160868.1| NADH-quinone oxidoreductase, F subunit [Salinispora tropica
           CNB-440]
 gi|145305908|gb|ABP56490.1| NADH-quinone oxidoreductase, F subunit [Salinispora tropica
           CNB-440]
          Length = 443

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 188/407 (46%), Positives = 248/407 (60%), Gaps = 8/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               +        +  + K ++   D +I  VK SGLRGRGGAGF TG+KW F+P+    
Sbjct: 24  DAWRIGTYERLDGYAALRKAMQAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQEPDG 83

Query: 76  ----RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
               RPHYLVVNADE EPGTCKD  +M H+PH+LIEG +IAS+AI A+ A+IY+RGE + 
Sbjct: 84  KAPTRPHYLVVNADEGEPGTCKDLPLMTHDPHSLIEGVIIASYAIRANRAYIYIRGEAVH 143

Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
               L+ AV E YA   LG N    G+D+D++VH GAGAYICGEETALL+SLEG +GQPR
Sbjct: 144 AARRLRHAVQEAYARNYLGKNILGSGFDLDLVVHSGAGAYICGEETALLDSLEGFRGQPR 203

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
           L+PPFPA  GLY  PT VNNV +IA VP ++  GA+W+   G E + G  ++S+SG V  
Sbjct: 204 LRPPFPATHGLYASPTVVNNVGTIASVPYLVLGGAAWWRTMGTEKSSGPMIYSLSGRVVN 263

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E SM +T  ELIE   G       +L    PGGSS P L A  +    +D++G+  
Sbjct: 264 PGQYECSMGVTLRELIELAGGM--RPGHSLRFWTPGGSSTPLLTADHL-DVPLDFEGVAA 320

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT A  +       + A +R   FY HESCG+CTPCREG  WM+RV  R++ G  
Sbjct: 321 AGSILGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILSGQG 380

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            + ++D L +   NI GR+ C LGD A  P+   +K F+    + ++
Sbjct: 381 TQEDLDTLLDTCDNILGRSFCGLGDGATSPVTSSLKYFKQDYLDYVE 427


>gi|304413375|ref|ZP_07394848.1| NADH:ubiquinone oxidoreductase, chain F [Candidatus Regiella
           insecticola LSR1]
 gi|304284218|gb|EFL92611.1| NADH:ubiquinone oxidoreductase, chain F [Candidatus Regiella
           insecticola LSR1]
          Length = 455

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 170/415 (40%), Positives = 241/415 (58%), Gaps = 7/415 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  +      L       +++ VK +GL+GRGGAGF TG+KWS MPK  S
Sbjct: 21  QPLWLEEYRNKNGYQGAKIALTSMAPSEVVDVVKNAGLKGRGGAGFPTGLKWSLMPKDDS 80

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH LIEG +I +FA+ A+  +I++RGE+I    
Sbjct: 81  INIRYLLCNADEMEPGTYKDRLLMEQLPHLLIEGMLIGAFALKAYRGYIFLRGEYIEAAV 140

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 141 RLRQAISEAKGAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 200

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL +G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 201 PFPASSGVWGRPTCVNNVETLCNVPAILEQGVDWYQGITAGKSNDAGTKLMGFSGRVKNP 260

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+  G   L A  PGG+    L A  +    MD++ + + 
Sbjct: 261 GVWELPFGITAREILEDYAGGMCDGLK-LKAWQPGGAGTDFLTADHL-DLPMDFEHIGKA 318

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W +++++ L +G  Q
Sbjct: 319 GSRLGTALAMAVDHQINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILQALERGEGQ 378

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR      I   ++ +F 
Sbjct: 379 PGDIETLEQLCRLLGPGKTFCAHAPGAVEPLQSAIKYFRDEFAAGIAPKYQGHFD 433


>gi|197301314|ref|ZP_03166399.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
 gi|197299632|gb|EDY34147.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
          Length = 628

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 156/425 (36%), Positives = 243/425 (57%), Gaps = 7/425 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +  N   +  + + + +S G ++ ++K+L E     ++ E+ AS LRGRGG 
Sbjct: 141 FYKKQTRNVLKNCGHIDAEHIEEYISTGGYEALEKVLFEMTPQEVVEEISASNLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KWS + +   ++  Y+V N DE +PG   DR IM  +PH +IEG +I ++A+GA
Sbjct: 201 GFPTGYKWSQVARQE-EKTRYVVCNGDEGDPGAFMDRSIMEGDPHKMIEGMMIGAYAVGA 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ +   SGLLG +     +   + ++ GAGA++CGE +A
Sbjct: 260 REGYIYVRAEYPLAISRLKRAISQAEESGLLGDHILGTDFSFRLHINRGAGAFVCGEGSA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EGK+G PR+KPP     GL+G PT +NNVE+ A VP I+ +GA W+   G E + 
Sbjct: 320 LTASIEGKRGMPRVKPPRTVEQGLFGKPTVLNNVETFANVPMIINKGAEWFRSIGPEKSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G V +   +E  M  T  E+I    G    G     AV  GG S  CL +  
Sbjct: 380 GTKAFALTGSVRHTGLIEVPMGTTLREVIYDIGG-GIKGDGAFKAVQIGGPSGGCLVSKD 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D LK+MG+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  
Sbjct: 439 L-DVSLDFDSLKKMGAMIGSGGLVVMDDHTCMVEVARFFMNFTQNESCGKCVPCREGTKR 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ER+V G  +  ++DLL E++  I    +C LG +AA P+   +K F     E + 
Sbjct: 498 MLEILERIVAGNGKLEDLDLLEELANMITETALCGLGKSAALPVMSTLKVFHDEYVEHVV 557

Query: 418 QYHRC 422
           +  +C
Sbjct: 558 E-KKC 561


>gi|326329615|ref|ZP_08195937.1| NADH oxidoreductase (quinone), F subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325952611|gb|EGD44629.1| NADH oxidoreductase (quinone), F subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 436

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 207/422 (49%), Positives = 270/422 (63%), Gaps = 8/422 (1%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T  +G +   +L    + G ++ +D  L    + +   VK SGLRGRGGAGF TG+KW
Sbjct: 8   VLTANWGDERAWTLPAYTATGGYEALDVALRMAPEDVQTTVKDSGLRGRGGAGFPTGVKW 67

Query: 67  SFMPKVCSDRP--HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
            F+P    + P   YLVVNADESEPGTCKD  +M   PHTL+EG +I+S+AI A  AFIY
Sbjct: 68  GFLPPPDPENPKPRYLVVNADESEPGTCKDIPLMMASPHTLVEGVIISSYAIRAERAFIY 127

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           VRGE +     LQAAV E YA+G LG+N    GYD++++VH GAGAYICGEETALL+SLE
Sbjct: 128 VRGEVLHVIRRLQAAVREAYAAGHLGTNIHGSGYDLELVVHAGAGAYICGEETALLDSLE 187

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G++GQPRL+PPFPA  GLY  PT +NN ESIA VP I++ GASW++G G E + G  +FS
Sbjct: 188 GRRGQPRLRPPFPAVAGLYASPTVINNAESIASVPAIVKNGASWFAGMGTEKSAGVGIFS 247

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SGHV  P   E  + IT  +LIE   G        L    PGGSS P      +    +
Sbjct: 248 LSGHVKKPGQYEAPLGITLRQLIELAGG--VREGHELKFWTPGGSSTPLFTQEHL-DVTL 304

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D++G+   GS LGT A+ + D S  +++A+ R + FYKHESCG+CTPCREGT W+++V+E
Sbjct: 305 DFEGVAAAGSMLGTRALQIFDDSVCVVRAVLRWTEFYKHESCGKCTPCREGTWWLVQVLE 364

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           RL KG  +  ++DLL +   NI GR+ CALGD A  PI   IK FR      ++Q   C 
Sbjct: 365 RLEKGDGKPEDLDLLLDQCDNILGRSFCALGDGATSPITSSIKYFRDEYLAHLEQGG-CP 423

Query: 424 FQ 425
           F 
Sbjct: 424 FD 425


>gi|15806512|ref|NP_295223.1| NADH dehydrogenase I subunit F [Deinococcus radiodurans R1]
 gi|6459262|gb|AAF11067.1|AE001994_3 NADH dehydrogenase I, F subunit [Deinococcus radiodurans R1]
          Length = 444

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 192/416 (46%), Positives = 251/416 (60%), Gaps = 11/416 (2%)

Query: 6   DRIFTNLYGLQG----KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
            R    LY   G     +L      G +  V +    G D +I EVK SGLRGRGGAGF+
Sbjct: 16  HRFAPTLYAQVGQPRSWTLDTYQRGGGYQGVRRAFALGPDAVIEEVKKSGLRGRGGAGFA 75

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP     +PH ++ NADESEPGT KDR +M  +PH LIEG +I  +A+ A   
Sbjct: 76  TGLKWSFMPLND-GKPHLIICNADESEPGTFKDRYLMSEDPHQLIEGMLIGGYAMRASRG 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++   E L AA+ E  A+GLLG +    G+D D+ VH GAGAYICGEETAL+ 
Sbjct: 135 YIYIRGEYVLAAERLWAAIHEARAAGLLGKDILGSGFDFDLQVHRGAGAYICGEETALMN 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +  PRLKPPFPA  GLYG PTT+NNVE+      IL+ GA W++G G E ++G K
Sbjct: 195 SLEGLRANPRLKPPFPAAAGLYGLPTTINNVETFCAATHILKYGADWHAGMGTEKSKGMK 254

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMR 299
           LF ISG V  P   E  +   F ELI    GG     +++ A+IPGG S   L     + 
Sbjct: 255 LFQISGPVARPGVYELPLGTPFRELIYDWAGGPT---EDIKAIIPGGISCQLLKWSEDIL 311

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG-TGWM 358
              MDY+ L   GS LGT  V ++  +  I+   W    FY HESCG+CTPCREG +GWM
Sbjct: 312 DTPMDYESLAAAGSSLGTGGVTLIPAAASIVDTTWNAVRFYGHESCGKCTPCREGISGWM 371

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +R+ E+L +G  Q  + +L+ +++ NI GR+ CAL DA   P+   I+ FR   + 
Sbjct: 372 VRMYEKLARGHGQPGDTNLILDMADNIGGRSFCALADACLGPVLSSIRLFREEYDA 427


>gi|255280972|ref|ZP_05345527.1| protein HymB [Bryantella formatexigens DSM 14469]
 gi|255268420|gb|EET61625.1| protein HymB [Bryantella formatexigens DSM 14469]
          Length = 626

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 150/425 (35%), Positives = 232/425 (54%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            +  Q RI   N      +S  + ++ G +    K L E   D +++ V  SGLRGRGG 
Sbjct: 139 FIAKQTRIVLENCGKFDAESFDEYLAGGGFSAFQKALFEMTPDEVVDVVDKSGLRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  + +   ++  Y+V N DE +PG   D  +M  +P+ LIEG +IA +A+G+
Sbjct: 199 GFPTGRKWKQVARQA-EKERYVVCNGDEGDPGAFMDGSVMEGDPYKLIEGMMIAGYAVGS 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+ E  A  +LG N     +   + ++ GAGA++CGE +A
Sbjct: 258 ENGYIYVRAEYPMSVARLKHAIAELEARHMLGDNILGTDFSFHMHINRGAGAFVCGEGSA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+ A VP I+  GA WY   G E   
Sbjct: 318 LTASIEGNRGMPRVKPPRTVEKGLWAKPTVLNNVETYANVPKIVLEGADWYRSIGTEGTP 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK FS++G +     +E  M  T  ++I    GG++ G     AV  GG S  CL   Q
Sbjct: 378 GTKTFSLTGSIQNTGLIEVPMGTTLRQIIFDIGGGMKDGG-TFKAVQIGGPSGGCLT-EQ 435

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +D++ +K+ G+ +G+  ++VMD  T +++       F + ESCG+C PCREGT  
Sbjct: 436 HLDVPLDFESIKKYGAIVGSGGLVVMDDHTCMVEVARFFMSFTQRESCGKCVPCREGTKR 495

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++E++V G  +  ++D L E++  ++   +C LG +A  P+   ++ FR   EE I 
Sbjct: 496 MLEILEKIVAGKGELEDLDRLEELAGMVKDMALCGLGKSAPLPVLSTLRTFRKEYEEHIV 555

Query: 418 QYHRC 422
              +C
Sbjct: 556 D-KKC 559


>gi|299138537|ref|ZP_07031716.1| NADH-quinone oxidoreductase, F subunit [Acidobacterium sp.
           MP5ACTX8]
 gi|298599783|gb|EFI55942.1| NADH-quinone oxidoreductase, F subunit [Acidobacterium sp.
           MP5ACTX8]
          Length = 444

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 203/415 (48%), Positives = 269/415 (64%), Gaps = 5/415 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           D+ ++ +  +G+    +   +    +  V K +E+G +WI+NE+KASGLRGRGGAGF TG
Sbjct: 9   DEVKVVSRRFGMGAAEIDKYVELDGYKAVQKAIEQGPEWIVNEMKASGLRGRGGAGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+PKV S++P Y++VN DESEPGTCKD  I  H+PH +IEG +IA  AIGA   FI
Sbjct: 69  MKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLHDPHAIIEGTMIAGLAIGAKMGFI 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLES 181
           Y+RGE+    + ++ AV + YA G LG N   K G D DII   GAGAY  GEE+AL+ES
Sbjct: 128 YLRGEYRYLLKIVEKAVADAYAKGFLGKNIFGKEGVDFDIITQTGAGAYEVGEESALMES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK+G PR+KPPFPA VGLYG PT +NN E+IA  P IL  G   Y+  G E N GT+L
Sbjct: 188 LEGKRGVPRIKPPFPAVVGLYGGPTVINNAETIANAPHILLMGGEAYAKLGSERNGGTRL 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ISGHV  P   E  M  +  + I +  GGI+ G   L AV+PGGSS P L A ++   
Sbjct: 248 FGISGHVERPGVYELPMGYSLRKAIYEVAGGIK-GGKQLKAVVPGGSSCPVLKADEI-DV 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+D + + G+ LG+  ++V+D S  I++   R   FY+HESCG C PCREGT W+ + 
Sbjct: 306 GLDFDQMGKAGTMLGSGGIVVLDESVSIVEFALRTIRFYQHESCGWCIPCREGTDWLKKT 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + R   G   K++ID +  +++N+ GRT C LGDAAA P  G IK FR   EE +
Sbjct: 366 LTRFHAGGGNKKDIDNIQYLAENMLGRTFCPLGDAAAMPTIGFIKKFRSEFEEYL 420


>gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 617

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 148/418 (35%), Positives = 241/418 (57%), Gaps = 6/418 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +   L  +  +SL D ++ G +  + KIL +   + +I++V+ SGLRGRGG GF TG KW
Sbjct: 139 VLRKLDAIDPESLDDYLALGGYRTLRKILFQMTPERVIDQVEKSGLRGRGGGGFLTGRKW 198

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               +V  +   +++ N DE +PG   DR +M  +PH +IEG ++ ++AIGA   +IYVR
Sbjct: 199 RLCRQVPGE-VKFIICNGDEGDPGAFMDRAVMEGDPHAVIEGLIVGAYAIGALKGYIYVR 257

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
            E+    + L  AV++    G LG+N  +  +  DI +  GAGA++CGEETAL+ S+EG+
Sbjct: 258 HEYPLAVKRLTRAVEQARDFGFLGTNILRSKFSFDIKISQGAGAFVCGEETALIASIEGR 317

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+P  +PP+P   GL+G PT +NNVE++A +P I+  GA  ++  G E ++GTK+FS+ 
Sbjct: 318 IGEPMPRPPYPIQAGLFGLPTVINNVETLANIPEIINLGAEHFAALGTEKSKGTKVFSLV 377

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN    +E  M  +   ++    GGI G  +   AV  GG S  C+P  Q     +DY
Sbjct: 378 GAVNNTGLLEVPMGTSLRHIVYDLGGGIPGNHE-FKAVQTGGPSGGCIPK-QFLDLPVDY 435

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L+++GS +G+  +IVMD  + ++        F   ESCG+CTPCREG   +  ++  +
Sbjct: 436 DSLQQVGSIMGSGGMIVMDTKSCMVDVARYFISFLMQESCGKCTPCREGLKQLHAILTDI 495

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             G  +++ + ++ ++ + +   ++C LG +AA P+   +K FR    + I    +C 
Sbjct: 496 TSGRGEEKHLAMMEDLCRTMASASLCGLGQSAANPVLSTLKYFREEYTKHIVD-KKCP 552


>gi|37787352|gb|AAP50520.1| Hox1F [Thiocapsa roseopersicina]
          Length = 536

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 157/421 (37%), Positives = 247/421 (58%), Gaps = 6/421 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q +I   N   +   S    ++ G +  + + L E     ++ EV  SGLRGRGG 
Sbjct: 118 FFARQQKIVLENAGIIDPDSFKGYVAVGGYSALIRALSEMTPADVLREVTDSGLRGRGGG 177

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KWS + K+ +    Y++ NADE +PG   DR I+  +PH ++EG  IA++AIGA
Sbjct: 178 GYPTGLKWSTVAKMPA-TQKYVICNADEGDPGAFMDRAILESDPHRVLEGMAIAAYAIGA 236

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETA 177
           + A++YVR E+    E LQ A+ +   SGLLG+      + +++ +  GAGA++CGEETA
Sbjct: 237 NKAYVYVRAEYPLAVERLQTAIRKAKRSGLLGNKIGDTQFSLEVEIRLGAGAFVCGEETA 296

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +GQPR +PP+PA  GL+G PT +NNVE+ A +  I+R G  W++  G E ++
Sbjct: 297 LMASIEGLRGQPRPRPPYPAEAGLWGYPTLINNVETFANIAPIVREGGDWFASIGTERSK 356

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M  +  ++IE   GGI GG     AV  GG S  C+PA  
Sbjct: 357 GTKVFALAGTITNTGLIEVPMGTSLRDIIEVIGGGIPGG-KAFKAVQTGGPSGGCIPAQH 415

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD LK +G+ +G+  +IVMD ++ ++        F   ESCG+C PCR GT  
Sbjct: 416 L-DIAVDYDSLKTLGTMMGSGGMIVMDETSSMVDVARYFMEFCMTESCGKCIPCRTGTQQ 474

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  +++RL K  A + E+ LL E+ + ++  ++C LG  A  P+   ++ FR   E ++ 
Sbjct: 475 MHSILDRLAKSQATRAELTLLEELCEVVQATSLCGLGQTAPNPVLSTMRYFRDEYEAKLG 534

Query: 418 Q 418
           +
Sbjct: 535 E 535


>gi|303238581|ref|ZP_07325115.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302593979|gb|EFL63693.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 574

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 146/421 (34%), Positives = 230/421 (54%), Gaps = 6/421 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   +  + + ++++ G ++ +   L +  RD +I  VK SGLRGRGG 
Sbjct: 137 FYKKQVRVALRNCGVINPEDIHEAIAVGAYEAMGMALTKMSRDEVIEVVKKSGLRGRGGG 196

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K       +++ NADE +PG   DR I+  +PH++IE   I ++AIGA
Sbjct: 197 GFPTGLKWEITKKQE-GAVKFIICNADEGDPGAFMDRSILEGDPHSVIEAMAIGAYAIGA 255

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L  A+ +    G+LG N     +  D+ + +GAGA++CGEETA
Sbjct: 256 DTGIVYIRAEYPLAVARLNIAIKQARELGVLGKNIFGTDFSFDVTLKYGAGAFVCGEETA 315

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S EGK+G+P  KPP+PA  G +G PT VNNVE+ A +P I+ RGA W++  G E ++
Sbjct: 316 LINSCEGKRGEPDYKPPYPAEEGYWGHPTCVNNVETFANIPVIITRGAEWFASMGSEKSK 375

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    VE  M IT  E+I    GGI  G     AV  GG S   L   +
Sbjct: 376 GTKVFALAGKINNVGLVEVPMGITLREIIYDIGGGI-SGGKRFKAVQTGGPSGGVLTEKE 434

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L  +GS +G+  +IVMD   +++        F   E+CG+C P R GT  
Sbjct: 435 L-DTPIDYDSLLAVGSMMGSGGMIVMDEDDNMVNIAKFYLEFTMDEACGRCAPGRIGTKR 493

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++  + +G A   ++D + +++  I+  ++C L   A  P+   +K+F       + 
Sbjct: 494 LFEMLHNITQGKATMADLDAMKQLAYLIKDSSLCGLCQTAPNPVISTMKHFWNEYLAFVK 553

Query: 418 Q 418
            
Sbjct: 554 D 554


>gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 626

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 152/418 (36%), Positives = 238/418 (56%), Gaps = 6/418 (1%)

Query: 3   TDQD-RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGF 60
            +Q+  I  ++   +  S+ D M+RG + ++ K+L +   D II  +K +GLRGRGG GF
Sbjct: 143 KNQNFYIMEDIGKCECDSIEDYMARGGYSSLIKVLSQMQADEIIEMIKNAGLRGRGGGGF 202

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW       SD   ++V N DE +PG   +R ++  +PH ++EG +IA + IGA  
Sbjct: 203 PTGLKWEAAKNSKSD-VKFVVCNGDEGDPGAFMNRTLLERDPHLVLEGMIIAGYTIGAQK 261

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+ Y+R E+    +  Q A+D+    GLLG N  + G+  D+ +  GAGA++CGEETALL
Sbjct: 262 AYAYIRAEYPIAIQMFQKAIDDAKKLGLLGENILQTGFSFDVEIKEGAGAFVCGEETALL 321

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EGK+G PR +PPFPA  GL+G PT +NNVE+ A +  I+R G   Y   G EN+ GT
Sbjct: 322 ASIEGKRGMPRPRPPFPAQSGLWGYPTLINNVETYANISRIIRDGVEKYRLLGTENSPGT 381

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+FS++G +     +E     T  ++I + CGG+    +   AV  GG S  CL    + 
Sbjct: 382 KMFSVTGPLKVTGIIEVEFGTTLRKIIYEICGGL-LSGEEFKAVQIGGPSGACLSKEFL- 439

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DYD LK   + +G+  ++V+ + T +++       F K ESCG+C PCREGT    
Sbjct: 440 DMPLDYDTLKSADAMVGSGGIVVITKRTCMVEVARFFLDFTKRESCGKCIPCREGTMQAY 499

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            ++E+  +  A K +++ L  ++  I+  ++C LG  A  PI   +K F+      ++
Sbjct: 500 NILEKFTQAKATKEDLENLEFLANLIKKTSLCGLGKTAPNPILSTLKLFKDEYLAHLN 557


>gi|88812971|ref|ZP_01128214.1| NADH dehydrogenase I chain F [Nitrococcus mobilis Nb-231]
 gi|88789749|gb|EAR20873.1| NADH dehydrogenase I chain F [Nitrococcus mobilis Nb-231]
          Length = 427

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 208/416 (50%), Positives = 271/416 (65%), Gaps = 7/416 (1%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
           F  L   +  +L +    G +  + K+ E+    + +I E+K S LRGRGGAGF TG+KW
Sbjct: 7   FATLRFDRPWTLDNYRKVGGYQALQKLFEQKVKPEEVIEEIKRSALRGRGGAGFPTGIKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP+       Y+V N+DESEPGTCKDRDI+R+ PH LIEG VIA +A+G    + Y+R
Sbjct: 67  SFMPRNAPG-QKYIVCNSDESEPGTCKDRDILRYNPHALIEGMVIAGYAMGVSVGYNYLR 125

Query: 127 GEFIRE-RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           GEF+RE  + ++ A+DE  A+G +G N    G+   +   +GAGAYICGEE+ LLESLEG
Sbjct: 126 GEFMREPFQRMEQALDEARAAGYIGENIQGRGFGFQLHNVYGAGAYICGEESGLLESLEG 185

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKG PR KPPFPA  GLYG PTTVNN E+ A VP+I+R GA W+   GR NN G K FS+
Sbjct: 186 KKGMPRYKPPFPAQFGLYGRPTTVNNTETFASVPSIIRNGAEWFLELGRPNNGGVKCFSV 245

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SGHV  P   E  +   F EL++   G        L AVIPGGSS+P +P  QM    MD
Sbjct: 246 SGHVVKPGNYEVPLGTPFRELLKMAGG--VRDEHKLKAVIPGGSSMPMVPGDQMLELDMD 303

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD L + GSGLG+  V+VMD +TD+IK I R+S FY  ESCGQCTPCREG GWM RV++R
Sbjct: 304 YDSLVKAGSGLGSGGVVVMDETTDMIKVILRISRFYYAESCGQCTPCREGCGWMYRVIKR 363

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           + +G  +  +++LL   +  I G TICA G+AAAWP+Q ++K++R      I+   
Sbjct: 364 IYEGKGRMADLELLESAAGQIAGHTICAFGEAAAWPVQSVLKHWRNEFVHYIEHKR 419


>gi|330465207|ref|YP_004402950.1| NADH-quinone oxidoreductase subunit F [Verrucosispora maris
           AB-18-032]
 gi|328808178|gb|AEB42350.1| NADH-quinone oxidoreductase subunit F [Verrucosispora maris
           AB-18-032]
          Length = 438

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 186/403 (46%), Positives = 245/403 (60%), Gaps = 5/403 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               +        +  + K L+   D +I  VK SGLRGRGGAGF TG+KW F+P+    
Sbjct: 24  DAWQIGTYEKLDGYAALRKALKAHPDDLIQLVKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADE EPGTCKD  +M H+PH+L+EG +IAS+AI A+ A+IY+RGE +     
Sbjct: 83  KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIASYAIRANRAYIYIRGEAVHAARR 142

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ AV+E  A G LG N    G+D++++VH GAGAYICGEETALL+SLEG +GQPRL+PP
Sbjct: 143 LRNAVEEAKAKGYLGKNILGSGFDLELVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNV +IA VP I+  GA W+   G E + G  ++S+SG +  P   
Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKSMGTEKSAGPMIYSLSGRIANPGQY 262

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  ELIE   G       NL    PGGSS P L A  +    +D++G+   GS 
Sbjct: 263 ECGLGITLRELIELAGGM--QPGHNLRFWTPGGSSTPLLTAEHL-DVPLDFEGVAAAGSI 319

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A  +       + A +R   FY HESCG+CTPCREG  WM+RV  R++ G     +
Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHDD 379

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +D L +   NI GR+ C LGD A   +   +K F+    + I+
Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFKQDYLDYIE 422


>gi|325003719|ref|ZP_08124831.1| NADH-quinone oxidoreductase, F subunit [Pseudonocardia sp. P1]
          Length = 454

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 197/410 (48%), Positives = 257/410 (62%), Gaps = 10/410 (2%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---- 72
             S+        + ++        D +I  +K SGLRGRGGAGF TGMKW F+P+     
Sbjct: 20  SWSIDTYEQLDGYTSLRTAFAAHPDQLIQLIKDSGLRGRGGAGFPTGMKWGFIPQDDGSG 79

Query: 73  --CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
                +P YLV+NADE EPGTCKD   M  +PH+LIEGC++ S+AI A+   IYVRGE +
Sbjct: 80  KGPGAKPKYLVINADEGEPGTCKDIPTMMADPHSLIEGCIVTSYAIRANFCAIYVRGEAL 139

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
                L+AAV E  A G LG++    G+D++I+VH GAGAYICGEETALL+SLEG++GQP
Sbjct: 140 HCIRRLRAAVREAKARGYLGTDILGSGFDLEIVVHAGAGAYICGEETALLDSLEGRRGQP 199

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RLKPPFPA  GLY CPT VNNVE+IA VP I+  G+ W+   GRE + G K++SISGHV 
Sbjct: 200 RLKPPFPATAGLYACPTVVNNVETIASVPAIVNGGSDWFRSMGREKSPGPKIYSISGHVE 259

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P   E  + IT  EL+E   G   G    L    PGGSS P L A  +    +D++G  
Sbjct: 260 RPGQYEAPLGITLRELLELAGGMKDGVP--LKFWTPGGSSTPLLTADHL-DVPLDFEGAA 316

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
           E GS LGT AV V + +  +  A+ + + FYKHESCG+CTPCREGT W+++V+ER+V G 
Sbjct: 317 EAGSMLGTTAVQVFNETVSVPWAVMKWTEFYKHESCGKCTPCREGTYWLVQVLERMVHGQ 376

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
               ++D++ +V  NI GR+ CALGD A  PI   I  FR    + I + 
Sbjct: 377 GTSADVDMMLDVCDNILGRSFCALGDGATSPITSGITYFRQEFLDLIAEQ 426


>gi|227494508|ref|ZP_03924824.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
 gi|226832242|gb|EEH64625.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
          Length = 444

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 199/424 (46%), Positives = 249/424 (58%), Gaps = 15/424 (3%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            D DR           +L    +RG +  ++K L      I + VKASGLRGRGGAGF T
Sbjct: 20  WDHDR---------SWTLDSYRARGGYRGLEKALTLEPTQITDMVKASGLRGRGGAGFPT 70

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSF+P     +P YLVVNADESEPGTCKD  ++   PH LIEG  I + AI    AF
Sbjct: 71  GLKWSFLP-PDDGKPRYLVVNADESEPGTCKDIPLLMANPHALIEGMAITARAIRCEHAF 129

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV--HHGAGAYICGEETALLE 180
           IY+RGE       L AAV E   +GL+G       D ++ +  H GAGAYICGEETALL+
Sbjct: 130 IYLRGEVAHVYRRLLAAVREAEEAGLIGQGLGPNGDFNLRITAHAGAGAYICGEETALLD 189

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++G PRLKPPFPA  GLY  PT VNNVESI+ VP I      W++  G E + G  
Sbjct: 190 SLEGRRGHPRLKPPFPAVAGLYARPTVVNNVESISQVPGIFANPEGWFAAMGTEKSTGHG 249

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            FS+SGHVN P   E    IT  ELIE   G        L    PGGSS P     ++  
Sbjct: 250 FFSVSGHVNNPGQFEAPFGITMRELIEMAGG--IRDGHQLKFWTPGGSSTPIFTEAEL-D 306

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+ +   GS L T A+ V D +T +++ I R + FY+HESCG+CTPCREGT WM +
Sbjct: 307 VPLDYESVGAAGSMLATRALQVFDETTSVVRVITRWTEFYQHESCGKCTPCREGTYWMKQ 366

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +M RL  G  +  +IDLL E++ NI G++ CALGDAAA P++  I  FR   E  +    
Sbjct: 367 IMLRLEAGRGKPGDIDLLDEIAGNIAGKSFCALGDAAATPVRSGIAKFREEFEAGLTTPA 426

Query: 421 RCNF 424
           R  F
Sbjct: 427 RELF 430


>gi|118579072|ref|YP_900322.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118580051|ref|YP_901301.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118581589|ref|YP_902839.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118501782|gb|ABK98264.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
 gi|118502761|gb|ABK99243.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
 gi|118504299|gb|ABL00782.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
          Length = 427

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 187/421 (44%), Positives = 243/421 (57%), Gaps = 6/421 (1%)

Query: 6   DRIFTNL-YGLQGKSLSDSMSRGHWDNVDKILEKGRDWIIN-EVKASGLRGRGGAGFSTG 63
           +RIF N        +L     RG +  ++  L+  +   +  EV ASGLRGRGGAGF TG
Sbjct: 4   ERIFFNFPVTADSHTLKAYQGRGGYQALENALKTLQPIDVEKEVMASGLRGRGGAGFPTG 63

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KWSF+ K       YL  NADE EPGT KDR I  H  H LIEG ++A++A+    AFI
Sbjct: 64  SKWSFVNKKAPVV--YLCCNADEGEPGTFKDRWIFEHNSHQLIEGMILAAYALNVRNAFI 121

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGEF      L  A+ E Y +G LG N     +  DI V  G GAY+CGEE++L  S+
Sbjct: 122 YIRGEFDLSFRRLMDAMSEAYKAGYLGENILGSSFSCDIRVMQGGGAYVCGEESSLYTSI 181

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG KG PR KPPFPA  GLY  PT VNNVE++A VP I+  GA  +S  G E + GTK+F
Sbjct: 182 EGFKGYPRNKPPFPAVQGLYKAPTVVNNVETLANVPWIMTNGAKAFSAMGTEKHPGTKIF 241

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SGHV  P   E  +     +LI + CGGI      L AVIPGGSS P L    +  A 
Sbjct: 242 GVSGHVKKPGLYELPLGYPLKKLIFEECGGI-LNGKELKAVIPGGSSTPILLPQDVETAN 300

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +D + L    + LG+  VIV+     +++ +  LS FY HESCGQCTPCREG+ WM  ++
Sbjct: 301 LDAECLSTYRTMLGSGGVIVIAEGVCMVRLLHTLSRFYAHESCGQCTPCREGSAWMNDII 360

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            R+V G   K +++ L  ++K I G T+CALGDAA+ P+   I  FR   +  I+     
Sbjct: 361 SRIVAGKGVKGDLESLERITKGIMGNTVCALGDAASMPVINFITKFRAEFDYYIEHGRSM 420

Query: 423 N 423
           N
Sbjct: 421 N 421


>gi|219847961|ref|YP_002462394.1| NADH-quinone oxidoreductase subunit F [Chloroflexus aggregans DSM
           9485]
 gi|219542220|gb|ACL23958.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus aggregans DSM
           9485]
          Length = 434

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 195/419 (46%), Positives = 261/419 (62%), Gaps = 9/419 (2%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  I   L        +     G W+     L EK    I+  VK SGLRGRGGAGF TG
Sbjct: 5   EHIIMRELDIPDISDFAVYRRHGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTG 64

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           MKWSF+PK     P YL+ N DESEPGT  +  I+   PH LIEG  +++FAI A+ A+I
Sbjct: 65  MKWSFLPK--GVYPRYLLCNCDESEPGTFNNHQIIDKNPHQLIEGVALSAFAIEANTAYI 122

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGEF     +L+ A+ + Y +G LG N    G+D+DI VH GAGAYICGEETAL+ESL
Sbjct: 123 YMRGEFAAAARTLERAIAQAYEAGFLGKNILSTGFDLDIYVHRGAGAYICGEETALMESL 182

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK GQPRLKPPFPA  GLYG PT +NNVE++A VP I+ +G +WY   G E + GTK F
Sbjct: 183 EGKIGQPRLKPPFPAVAGLYGKPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCF 242

Query: 243 SISGHVNYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           S+SGHVN P   E    +   ELIE  ++ GG++GG   +  +IPGG+S P L A  +  
Sbjct: 243 SLSGHVNRPGNYELPFGVPLRELIESPEYGGGMKGGRP-VKIIIPGGASAPWLTADHL-D 300

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+ L   GS LG+ AVIV++ +       +++  F+KHESCG+CTPCREGT W++R
Sbjct: 301 VPLDYESLAAAGSMLGSGAVIVLNDTVSAPHLAYKMDEFFKHESCGKCTPCREGTHWLVR 360

Query: 361 VMERLV-KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           V+ R+V +G A   +ID L+ + + + G   C LG++A  PI+  ++ F    E  + Q
Sbjct: 361 VLHRMVEEGHATAADIDTLHGIYRQMAGNCFCLLGESAVMPIKSALQLFPHEFEALVKQ 419


>gi|146341846|ref|YP_001206894.1| putative formate dehydrogenase subunit beta [Bradyrhizobium sp.
           ORS278]
 gi|146194652|emb|CAL78677.1| Putative formate dehydrogenase beta subunit [Bradyrhizobium sp.
           ORS278]
          Length = 518

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +   SL D  + G +  + + L    D +I EV  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFARCGIIDPLSLEDYRAHGGYKGLTRALTLSPDAVIAEVTTSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  +D   Y++ NADE + GT  DR +M  +P  LIEG  I   A+GA  
Sbjct: 158 PTGIKWKTVSQTAAD-RKYVICNADEGDSGTFADRMLMEGDPFVLIEGMTICGIAVGATK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY R E+     ++  A+D    +GLLG       Y  ++ V  GAGAY+CGEETAL+
Sbjct: 217 GYIYTRSEYPHAIATMTKAIDIAKKAGLLGDKISGSNYTFELEVRTGAGAYVCGEETALM 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+ GL+G PT VNN+ S A +P IL  GA  Y+ FG   +RGT
Sbjct: 277 ESLEGKRGIVRAKPPLPAHHGLFGKPTVVNNLLSFAAIPFILDEGAKAYADFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V +    E +  IT  EL++   GG       + AV  GG      P   + 
Sbjct: 337 MPIQIAGNVKFGGLFETAFGITLGELVDDIGGGT-FTGRPVRAVQVGGPLGAYFPRA-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   ++V D + D+ K       F   ESCG+CTPCR G+    
Sbjct: 395 DTPFDYEAFAAKEGLIGHGGIVVFDDTVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGA 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++++ +G      I L+ ++   ++  ++CALG    +P+   +K+FR   
Sbjct: 455 ETIDKIRRGERVAENIALVEDLCGTMKLGSLCALGGFTPYPVLSALKHFREDF 507


>gi|152996297|ref|YP_001341132.1| NADH dehydrogenase [Marinomonas sp. MWYL1]
 gi|150837221|gb|ABR71197.1| NADH dehydrogenase (quinone) [Marinomonas sp. MWYL1]
          Length = 522

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 162/413 (39%), Positives = 229/413 (55%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +   SLSD      ++ + K L      ++++VK SGLRGRGGA F
Sbjct: 100 LKHQQRLTFARIGEIDPLSLSDYQKLNGFNGLKKALTMDSQALVDQVKESGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S+   Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 160 PTGIKWQTVLNAPSE-QKYIVCNADEGDSGTFADRLVMECDPFMLIEGMIIAGLAVGATQ 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    ++L  A+   Y + LLG +    G   D+ V  GAGAYICGEET+LL
Sbjct: 219 GYIYLRSEYPLAYKTLNQAIGLAYGNNLLGRDIQGSGKHFDLEVRLGAGAYICGEETSLL 278

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA VGL+G PT VNNV S+A VP IL +GA  Y+  G   +RGT
Sbjct: 279 ESLEGKRGLVRAKPPLPAIVGLFGQPTVVNNVLSLAAVPFILDQGAKAYADCGMGRSRGT 338

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +      EL+    GG R G   L AV  GG     LP  Q  
Sbjct: 339 LPFQLAGNVKRGGLVELAFGPKLSELMFDFGGGTRNGRP-LRAVQVGGPLGAYLPESQ-W 396

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   + G+ LG   V++ D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 397 DTQLDYEEFAKEGAVLGHGGVVMFDDTVDMSEQARFSMEFCVAESCGKCTPCRIGSTRGV 456

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+  G      I+LL ++ + +   ++CA+G    +P+Q  +K+FR   
Sbjct: 457 EVIDRIRAGENVNSNIELLEDLCETMVDGSLCAMGGMTPFPVQSAMKHFRDDF 509


>gi|320107665|ref|YP_004183255.1| NADH dehydrogenase (quinone) [Terriglobus saanensis SP1PR4]
 gi|319926186|gb|ADV83261.1| NADH dehydrogenase (quinone) [Terriglobus saanensis SP1PR4]
          Length = 440

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 196/416 (47%), Positives = 265/416 (63%), Gaps = 5/416 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           D+ +I +  +G     +   +    +  V   +  G +W+I E+KASGLRGRGGAGF TG
Sbjct: 9   DEVKILSRRFGQGAAEIEKYVEMDGYKAVQNAITNGPEWVITEMKASGLRGRGGAGFPTG 68

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSF+PKV S++P Y++VN DESEPGTCKD  I  H+PH +IEG +IA  AIGA   FI
Sbjct: 69  LKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLHDPHAVIEGTMIAGLAIGAKMGFI 127

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLES 181
           Y+RGE+    + ++ AV + YA G LG N     G D DI+   GAGAY  GEE+AL+ES
Sbjct: 128 YLRGEYRYLLKIVEKAVADAYAKGYLGKNIFGHEGVDFDIVTQTGAGAYEVGEESALMES 187

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           LEGK+G PR+KPPFPA VGLYG PT +NN E+IA  P IL  G   Y+  G E N GT+L
Sbjct: 188 LEGKRGIPRIKPPFPAIVGLYGGPTVINNAETIASAPPILLMGGEAYAKVGSERNGGTRL 247

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ISGHVN P   E  M  +  + I +  GGI+ G   L AV+PGGSS P L   ++   
Sbjct: 248 FGISGHVNKPGVYELPMGYSLRKAIYEVAGGIK-GGRALKAVVPGGSSCPVLLPEEI-DV 305

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+D + + G+ LG+  ++V+D +  I++   R   FY+HESCG C PCREGT W+++ 
Sbjct: 306 GLDFDQMGKAGTMLGSGGIVVLDETVSIVEFAMRTMKFYQHESCGWCIPCREGTDWLLKT 365

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + R   G   K++I+ +  +++N+ GRT C LGDAAA P  G IK FR   EE ++
Sbjct: 366 LTRFYDGGGNKKDINNIQYLAENMMGRTFCPLGDAAAMPTLGFIKKFRHEFEEYLE 421


>gi|94676644|ref|YP_588821.1| NADH-quinone oxidoreductase, F subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219794|gb|ABF13953.1| NADH-quinone oxidoreductase, F subunit [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 444

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 172/415 (41%), Positives = 241/415 (58%), Gaps = 6/415 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            Q   L +  S+  +    K L++  D II+ +K SGL+GRGGAGF TG+KWS +    S
Sbjct: 20  HQPVWLDEYKSKNGYVGAHKALKQTPDEIISLIKNSGLKGRGGAGFYTGIKWSLISVNAS 79

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +   YL+ NADE EPGT KDR +M   PH LIEG +IA+FAI A+ ++I++RGE++    
Sbjct: 80  ENIRYLLCNADEMEPGTYKDRLLMEQLPHLLIEGILIAAFAIRANRSYIFLRGEYVNAAA 139

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +LQ A+ E   +GLLG N     +D+++ +H GAG YICGEETALL SLEG++  PR KP
Sbjct: 140 NLQRAIIEANKAGLLGKNILGSEFDLELFLHTGAGRYICGEETALLNSLEGRRAIPRSKP 199

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA +G++G PT VNNVE++  VP IL  G  WY     G  N+ GTKL   SG V  P
Sbjct: 200 PFPATIGVWGKPTCVNNVETLCNVPAILEYGLKWYKSINKGMSNDTGTKLMGFSGRVKKP 259

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GGI  G   L A  PGG+S   L    +    MD++ L + 
Sbjct: 260 GLWELPFGITAREILEDYAGGIADGM-TLKAWQPGGASTGFLTPDYL-DIPMDFEHLIQA 317

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  I +D   +++     +  F+  ESCG CTPCR+G  W ++++  L     Q
Sbjct: 318 GSRLGTALAIAVDDKINMVSLTRNIEEFFARESCGWCTPCRDGLPWSVKLLRALEDKQGQ 377

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +I++L ++   +  G+T CA    A  P++  +K FR   E  I   +  N +
Sbjct: 378 PEDINILEQLCTLLAPGKTFCAHAPGAIEPLKSALKYFRGEFEAGISDENLSNVR 432


>gi|160878249|ref|YP_001557217.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160426915|gb|ABX40478.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 628

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 151/429 (35%), Positives = 238/429 (55%), Gaps = 10/429 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   +   +  +S+++ ++ G +  V K L +   + I++E+  S LRGRGG 
Sbjct: 139 FYKQQTRVALEHCGHINAESINEYIAMGGYQAVAKALFDMTSESIVDEISDSYLRGRGGG 198

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW+ + +   +   Y+V N DE +PG   DR +M  +PH +IEG +IA  A  A
Sbjct: 199 GFPTGKKWAQVLRQTEE-TKYVVCNGDEGDPGAFMDRSMMEGDPHRMIEGMIIAGIATKA 257

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IYVR E+      L+ A+++  + GLLG N    G+   + +  GAGA++CGE +A
Sbjct: 258 HYGYIYVRAEYPLAVHRLETAIEQARSLGLLGCNILGSGFSFALKISQGAGAFVCGEGSA 317

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+   VP+I+ +GA WY  +G E N 
Sbjct: 318 LTASIEGNRGMPRVKPPRTVEKGLFEKPTVLNNVETFCNVPSIILKGADWYKTYGLEKNY 377

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL---P 294
           GTK F+++G+V     +E  M  T  ++I    GG++GG     AV  GG S  CL    
Sbjct: 378 GTKAFALTGNVMNTGLIEVPMGTTLRKVIYDIGGGVKGGE--FKAVQIGGPSGGCLVLNA 435

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
                   +D+D LK++G+ +G+  ++VM+  + +++       F ++ESCG+C PCREG
Sbjct: 436 ENDHLDMPLDFDSLKKVGAMIGSGGLVVMNDKSCMVEVARFFMNFTQNESCGKCVPCREG 495

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           T  M+ ++  +V+G      +DLL E+++ I    +C LG  AA P+   IK FR     
Sbjct: 496 TKRMLELLTDIVEGRGTLEHLDLLEELAETISATALCGLGKTAASPVVSTIKYFRDEYIA 555

Query: 415 RIDQYHRCN 423
            +    +C 
Sbjct: 556 HVVD-KKCP 563


>gi|53804527|ref|YP_113816.1| NADH dehydrogenase I, F subunit [Methylococcus capsulatus str.
           Bath]
 gi|53758288|gb|AAU92579.1| NADH dehydrogenase I, F subunit [Methylococcus capsulatus str.
           Bath]
          Length = 427

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 175/418 (41%), Positives = 247/418 (59%), Gaps = 8/418 (1%)

Query: 6   DRIFTNLYGLQGKS--LSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFST 62
           D+  T      G +  L++ ++ G ++ + K L +     + + VK SGLRGRGGAGF T
Sbjct: 2   DKPLTRNIKSDGSTVTLAEYLASGGYEGLKKTLAEFAPLDVQQRVKDSGLRGRGGAGFPT 61

Query: 63  GMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           G+KWSF+P      R  YLVVN DE EPG  KDR ++  +PH LIEG VIA++AI A+ A
Sbjct: 62  GLKWSFVPMGEGAPRTKYLVVNGDEMEPGAFKDRLLLEGDPHQLIEGVVIAAYAIQANIA 121

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++++RGE+      L+ A+ E  A GLLG +    G+ +D+ +H  AG YICGEETALL 
Sbjct: 122 YVFLRGEYRLAAARLRQAIAEAEAQGLLGEDILGSGFSLDLRLHTSAGRYICGEETALLN 181

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+  PR KPPFP   GL+G PT VNNVE++  +P ILR G  WY G  R    GTK
Sbjct: 182 SLEGKRANPRAKPPFPQVSGLFGKPTIVNNVETLCNLPHILRNGVEWYKGLSRTGEPGTK 241

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           ++ +SG V  P   E  M  T  E+IE+H GG+R G+  L   +PGG+S   L    +  
Sbjct: 242 IYGVSGRVRSPGAWELPMGTTAREIIEEHAGGMRDGY-RLKGYLPGGASTDFLLPEHL-D 299

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDY  + + GS LGT  +I++D  T  ++ +  L  F+  ESCG CTPCR+G  W + 
Sbjct: 300 IPMDYGSIGKAGSRLGTGTMILLDDKTCPVQMVLNLERFFAQESCGWCTPCRDGLPWTVS 359

Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++E L++G  +  +++ L  +   +  G T CAL   A  P+Q  +K+FR   E  + 
Sbjct: 360 LLEGLIEGRGRPEDLETLERLCGLLGPGNTFCALAPGAMEPLQSALKHFRADFERYLQ 417


>gi|163751850|ref|ZP_02159065.1| NADH dehydrogenase I, F subunit [Shewanella benthica KT99]
 gi|161328266|gb|EDP99428.1| NADH dehydrogenase I, F subunit [Shewanella benthica KT99]
          Length = 458

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 164/418 (39%), Positives = 242/418 (57%), Gaps = 11/418 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCS 74
               LS+ +S G +D + + +E   D +++ +K S LRGRGGAGF TG+KWSF+P+   +
Sbjct: 17  NCWQLSEYLSHGGYDGLTRAMEMSADELLDSIKQSNLRGRGGAGFPTGLKWSFVPRGADA 76

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            R  YL+VNADE EPG  KDR ++   PH +IEG +I    +GA   +I++RG++    E
Sbjct: 77  PREKYLIVNADEMEPGAFKDRWLLEQTPHQIIEGLLIGGLTLGATQGYIFLRGDYYLAEE 136

Query: 135 SLQAAVDECYASGLLGSNS------KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
            LQ A++EC    LLG +          ++ +I +H  AG YICGEETAL+ ++EGK+  
Sbjct: 137 RLQQAIEECKQHQLLGRDILGRGIQGQAFNFEIHLHSSAGRYICGEETALINAMEGKRAT 196

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR KPPFP  VGL+G PT VNNVE+   +P I+  G+ W+   G+  + GTK+F +SG V
Sbjct: 197 PRAKPPFPQVVGLWGKPTIVNNVETFCNLPHIINFGSDWFKALGKGQDAGTKIFGVSGRV 256

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E  M  +  E+IE H GG+  G+  L   +PGG S   L    +  A+MDYD +
Sbjct: 257 KRPGLWELPMGTSIREIIEHHAGGMCDGY-RLKGFLPGGGSTDFLLEEHL-DALMDYDEI 314

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            ++GS +GT  +I++D     +  +  L  F+  ESCG CTPCR+G  W + ++E++ +G
Sbjct: 315 SKLGSRMGTGTIIILDDKYCPVSMVLNLVRFFAQESCGWCTPCRDGLPWAVSLLEKIERG 374

Query: 369 IAQKREIDLLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             + ++ID L ++      G T CAL   A  P+Q  +K FR   E  I     C + 
Sbjct: 375 EGEPKDIDQLEDLCDFAAPGNTFCALAPGAVEPLQSALKYFRQDFETHIKHQC-CPYH 431


>gi|315605125|ref|ZP_07880176.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313161|gb|EFU61227.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 434

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 198/418 (47%), Positives = 250/418 (59%), Gaps = 12/418 (2%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I TN +G +   +L    +RG +  ++K        I+  VK SGLRGRGGAGF +G+KW
Sbjct: 14  IITNGWGEERSWTLDSYRARGGYLGLEKARAMDPADIVAAVKDSGLRGRGGAGFPSGLKW 73

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YLVVNADESEPGTCKD  ++   PH LIEG  I S AIG   AF+Y+R
Sbjct: 74  SFLPPADGG-PRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLR 132

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE       L +AV E   +G+LG       D+ I  H GAGAYICGEETALL+SLEG++
Sbjct: 133 GEVTHVYRRLLSAVREATEAGVLG-------DLRITAHAGAGAYICGEETALLDSLEGRR 185

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GLY  PT VNNVE+IA V  I R    W++  G E ++G  +FS+SG
Sbjct: 186 GHPRLKPPFPAVAGLYARPTVVNNVETIAQVAGIFRNSPQWFASMGTEKSKGHGIFSVSG 245

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV  P   E    IT  ELI+   G        L    PGGSS P     ++    +DY+
Sbjct: 246 HVANPGQFEAPFGITMRELIDMAGG--IRQGHTLKFWTPGGSSTPIFTQDEL-DTPLDYE 302

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS LGT A+ V D +  +++ I R S FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 303 SVGAAGSMLGTRALQVFDETVSVVRVITRWSEFYQHESCGKCTPCREGTYWMKQIMLRLE 362

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +G  +  ++DLL E++ NI GR+ C LGDAAA PI   IK FR   E  +    R  F
Sbjct: 363 RGEGRPGDVDLLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFRDEFEAGLTTPARELF 420


>gi|326919902|ref|XP_003206216.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like, partial [Meleagris gallopavo]
          Length = 374

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 246/370 (66%), Positives = 293/370 (79%), Gaps = 1/370 (0%)

Query: 57  GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           GAGF TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++A  A+
Sbjct: 1   GAGFPTGLKWSFMNKPPDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVAGRAM 60

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175
           GA  A+IY+RGEF  E  +LQ A+ E Y +GLLG N+    Y  D+ V  GAGAYICGEE
Sbjct: 61  GARAAYIYIRGEFYNEASNLQVAIREAYEAGLLGKNACGSDYAFDVFVVRGAGAYICGEE 120

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE 
Sbjct: 121 TALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVAPTICRRGGAWFAGFGRER 180

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH GG+RGGWDNLLAVIPGGSS P LP 
Sbjct: 181 NSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVRGGWDNLLAVIPGGSSTPLLPK 240

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
                 +MD+D L +  SGLGTAAVIVMD+STDI+KAI RL  FYKHESCGQCTPCREG 
Sbjct: 241 SVCETVLMDFDSLVQAQSGLGTAAVIVMDKSTDIVKAIARLIEFYKHESCGQCTPCREGV 300

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            WM +VM R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +E+R
Sbjct: 301 DWMNKVMARFVRGDAQTAEIDALWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDR 360

Query: 416 IDQYHRCNFQ 425
           + ++     Q
Sbjct: 361 MRRFGEAKAQ 370


>gi|222526373|ref|YP_002570844.1| NADH-quinone oxidoreductase subunit F [Chloroflexus sp. Y-400-fl]
 gi|222450252|gb|ACM54518.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus sp. Y-400-fl]
          Length = 434

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 187/401 (46%), Positives = 255/401 (63%), Gaps = 9/401 (2%)

Query: 23  SMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
               G W+     L EK    I+  VK SGLRGRGGAGF TG+KW F+PK     P YL+
Sbjct: 23  YRRHGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTGIKWGFLPK--GVYPRYLL 80

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
            N DESEPGT  +  I+   PH LIEG  ++++AI A+ A+IY+RGEF     +L+ A+ 
Sbjct: 81  CNCDESEPGTFNNHQIIDKNPHQLIEGVALSAYAIEANTAYIYMRGEFAAAARTLERAIA 140

Query: 142 ECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
           + Y +G LG N    G+D+DI VH GAGAYICGEETAL+ESLEGK GQPRLKPPFPA  G
Sbjct: 141 QAYEAGFLGKNIFGTGFDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLKPPFPAVAG 200

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           LYG PT +NNVE++A VP I+ +G +WY   G E + GTK FS+SGHVN P   E    +
Sbjct: 201 LYGKPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCFSLSGHVNRPGNYELPFGV 260

Query: 261 TFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
              ELIE  ++ GG++GG   +  +IPGG+S P L A  +    +DY+ +   GS LG+ 
Sbjct: 261 PLRELIESPEYGGGMKGGRP-VKIIIPGGASAPWLTADHL-DVPLDYESVAAAGSMLGSG 318

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV-KGIAQKREIDL 377
           AVIV++ +       +++  F+KHESCG+CTPCREGT W++R + R+V +G A   +ID 
Sbjct: 319 AVIVLNDTVSAPHVAYKMDEFFKHESCGKCTPCREGTHWLVRTLHRMVEEGHATAADIDT 378

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L+ + + + G   C LG++A  PI+  ++ F    E  + +
Sbjct: 379 LHSIYRQMAGNCFCLLGESAVMPIKSALQLFPHEFEALVKR 419


>gi|298528242|ref|ZP_07015646.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511894|gb|EFI35796.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 593

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 147/426 (34%), Positives = 230/426 (53%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
              +Q ++     G +  + L   ++   +              II ++K S LRGRGGA
Sbjct: 107 FQDNQKKVVLAHCGEIDPEDLDAYLNVKGYQAARNAFNNMHPVEIIEKIKRSKLRGRGGA 166

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GFSTG KW F  KV  D+  Y+V N +ES+PG   DR IM  +PH +IEG +I + AIGA
Sbjct: 167 GFSTGHKWEFAYKVD-DQEKYVVCNGNESDPGAFADRCIMEGDPHAVIEGMMICARAIGA 225

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY+R  +    + L+ A+ +CY  GLLG N  + G+D+DI ++   GA+ICGE TA
Sbjct: 226 GKGYIYIRDGYSLAVKRLRLALKQCYERGLLGKNIFESGHDLDIKLYPAPGAFICGEATA 285

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L++S+EGK+  P  +    +  G+ G PT +NN E++A VP ILR GASW++G G + + 
Sbjct: 286 LVQSIEGKRAMPTPRMTRTSENGIRGKPTVINNAETLANVPKILRNGASWFAGLGTDTSG 345

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++G V     VE  M  T  +++ K  GGI         +  GG +  C+P   
Sbjct: 346 GTKVFSLTGKVKSNGLVEVPMGATLRDVVYKVGGGI-DQDRAFKGIQLGGPTGGCVPGS- 403

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
              + +DY+ L   G+ +G+  ++V+D +  I+          + ESCG+CTPCR G   
Sbjct: 404 CLDSRVDYESLALAGTIMGSGGMVVLDETNCIVDTAKFFLDITQAESCGKCTPCRIGMRR 463

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++ER+  G  +  +++LL ++  +I   ++C  G  A  P+   ++ FR      I 
Sbjct: 464 MYEILERITIGNGRDGDVELLEDLGSHIRATSLCGFGMTAPNPVLSTVRYFRDEYNIHIR 523

Query: 418 QYHRCN 423
              +C 
Sbjct: 524 D-RKCP 528


>gi|295837120|ref|ZP_06824053.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB74]
 gi|197697230|gb|EDY44163.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB74]
          Length = 461

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 197/412 (47%), Positives = 256/412 (62%), Gaps = 7/412 (1%)

Query: 16  QGKSLSDSMSRG-HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +  +L         ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+   
Sbjct: 36  ESWTLDTYRRCDDGYEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GD 94

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +PHYLVVNADESEPGTCKD  ++   PH LIEG VIA +AI +  AFIY+RGE +    
Sbjct: 95  GKPHYLVVNADESEPGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLR 154

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E YA+G LG N    G DV++ VH GAGAYICGEETALL+SLEG++GQPRL+P
Sbjct: 155 RLHEAVREAYAAGYLGENILGSGTDVELTVHAGAGAYICGEETALLDSLEGRRGQPRLRP 214

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY CPT VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P  
Sbjct: 215 PFPAVEGLYACPTVVNNVESIASVPAILNRGKDWFRSMGSEKSPGFTLYSLSGHVASPGQ 274

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS
Sbjct: 275 YEAPLGITLRQLLDLSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGS 331

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  
Sbjct: 332 MLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRAD 391

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ++D L +++ NI G++ CALGD AA PI   +K FR   E  +D    C F 
Sbjct: 392 DLDKLLDIADNINGKSFCALGDGAASPIASSLKYFREEYEAHLD-GKGCPFD 442


>gi|148254529|ref|YP_001239114.1| putative formate dehydrogenase subunit beta [Bradyrhizobium sp.
           BTAi1]
 gi|146406702|gb|ABQ35208.1| formate dehydrogenase beta subunit [Bradyrhizobium sp. BTAi1]
          Length = 518

 Score =  451 bits (1161), Expect = e-125,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    SL D  + G +  + + L    D +I EV  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFARCGIVDPLSLDDYRAHGGYKGLTRALTLTPDAVIAEVTTSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  +D   Y++ NADE + GT  DR +M  +P  LIEG  I   A+GA  
Sbjct: 158 PTGIKWKTVSQTAAD-RKYVICNADEGDSGTFADRMLMEGDPFVLIEGMTICGIAVGATK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY R E+     ++  A++    +GLLG       Y  D+ V  GAGAY+CGEETAL+
Sbjct: 217 GYIYTRSEYPHAIATMAKAIEIAKKAGLLGDKIAGSNYTFDLEVRTGAGAYVCGEETALM 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+ GL+G PT VNN+ S A +P IL  GA  Y+ FG   +RGT
Sbjct: 277 ESLEGKRGVVRAKPPLPAHHGLFGKPTVVNNLLSFAAIPFILDEGAKAYADFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V +    E +  IT  EL++   GG       + AV  GG      P   + 
Sbjct: 337 MPIQIAGNVKFGGLFETAFGITLGELVDDIGGGT-FTGRPVRAVQVGGPLGAYFPRA-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   ++V D + D+ K       F   ESCG+CTPCR G+    
Sbjct: 395 DTPFDYEAFAAKDGLIGHGGIVVFDDTVDMSKQARFAMEFCAIESCGKCTPCRIGSTRGA 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++++ +G      I L+ ++   ++  ++CALG    +P+   +K+FR   
Sbjct: 455 ETIDKIRRGERVAENIALVEDLCGTMKLGSLCALGGFTPYPVLSALKHFREDF 507


>gi|314925995|gb|EFS89826.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA3]
          Length = 444

 Score =  451 bits (1160), Expect = e-125,   Method: Composition-based stats.
 Identities = 191/399 (47%), Positives = 260/399 (65%), Gaps = 5/399 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
              L +   +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  
Sbjct: 18  SWKLLNYERQGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVN DESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +
Sbjct: 77  PTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRV 136

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q AV E Y++G +G N    GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPF
Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT +NNVESI+ VP+ILR G  W+   G E + G  ++S+SGH+ +P   E
Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  +L+    GG+R G + L    PGGSS P L    +    +DY+G+    + L
Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+   D +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G +Q+ ++
Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGESQEGDV 373

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           D L +++ NI GR+ CAL D A   ++G I +FR   E 
Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412


>gi|229821704|ref|YP_002883230.1| NADH-quinone oxidoreductase, F subunit [Beutenbergia cavernae DSM
           12333]
 gi|229567617|gb|ACQ81468.1| NADH-quinone oxidoreductase, F subunit [Beutenbergia cavernae DSM
           12333]
          Length = 439

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/398 (49%), Positives = 248/398 (62%), Gaps = 11/398 (2%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             +L     RG +  +++   +  + I++ VKASGLRGRGGAGF TG+KWSF+P      
Sbjct: 30  SWTLEAYRERGGYRALEEARSRKPEEIVDAVKASGLRGRGGAGFPTGLKWSFLP-PPDGG 88

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVNADESEPGTCKD  +M   PH LIEG  I S+AIG   AFIY+RGE +     L
Sbjct: 89  PRYLVVNADESEPGTCKDIPLMLANPHALIEGSAITSYAIGCDHAFIYLRGEVVHVYRRL 148

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            AAV E  A+GLLG        + I VH GAGAYICGEETALL+SLEG +GQPRLKPPFP
Sbjct: 149 LAAVREAEAAGLLG-------GLRITVHAGAGAYICGEETALLDSLEGLRGQPRLKPPFP 201

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GLY  PT VNNVESIA VP+I+  G  W++  G E + G  LFS+SGHV  P   E 
Sbjct: 202 AVAGLYARPTVVNNVESIASVPSIVLGGPEWFTSMGTEKSAGFGLFSLSGHVTRPGQYEA 261

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            + IT  EL++   G        L    PGGSS P L    +    +DY+ +   GS L 
Sbjct: 262 PLGITLRELLDLAGG--VRDGHELKFWTPGGSSTPILTDEHL-DVPLDYESVAGAGSMLA 318

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+ +++ RL +G     ++D
Sbjct: 319 TRALQIFDETTSVVRAVARWTDFYAHESCGKCTPCREGTYWLKQILHRLEEGRGTAEDLD 378

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            L E++ NI GR+ CA GDAA  PIQ  +K FR   E 
Sbjct: 379 TLDEITANIAGRSFCAFGDAAVTPIQSGMKYFRSEFEA 416


>gi|238062216|ref|ZP_04606925.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. ATCC
           39149]
 gi|237884027|gb|EEP72855.1| NADH-quinone oxidoreductase, F subunit [Micromonospora sp. ATCC
           39149]
          Length = 438

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 184/403 (45%), Positives = 244/403 (60%), Gaps = 5/403 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               +        +  + K L+   D +I  +K SGLRGRGGAGF TG+KW F+P+    
Sbjct: 24  DAWRIGTYEKLDGYAALRKALKAHPDDLIQLIKDSGLRGRGGAGFPTGLKWGFIPQ-GDG 82

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADE EPGTCKD  +M H+PH+L+EG +I S+AI A  A+IY+RGE +     
Sbjct: 83  KPHYLVVNADEGEPGTCKDLPLMTHDPHSLVEGVIIGSYAIRASRAYIYIRGEAVHAARR 142

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ AV E YA G LG +    G+D++++VH GAGAYICGEETALL+SLEG +GQPRL+PP
Sbjct: 143 LRNAVQEAYAKGYLGRDILGSGFDLELVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNV +IA VP I+  GA W+   G E + G  ++S+SG V  P   
Sbjct: 203 FPATHGLYASPTVVNNVGTIASVPYIVLGGADWWKTMGTEKSSGPMIYSLSGRVANPGQY 262

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E +M +T  EL+E   G       NL    PGGSS P L A  +    +D++G+   GS 
Sbjct: 263 ECTMGVTLRELLELAGGM--QPGHNLRFWTPGGSSTPLLTAEHL-DVPLDFEGVAAAGSI 319

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A  +       + A +R   FY HESCG+CTPCREG  WM+RV  R++ G     +
Sbjct: 320 LGTTATQIFSDQDCPVYATYRWLEFYHHESCGKCTPCREGNYWMVRVYRRILAGQGTHED 379

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +D L +   NI GR+ C LGD A   +   +K F+    + I+
Sbjct: 380 LDTLLDTCDNILGRSFCGLGDGATSSVTSSLKYFKQDYLDYIE 422


>gi|298293800|ref|YP_003695739.1| NADH dehydrogenase (quinone) [Starkeya novella DSM 506]
 gi|296930311|gb|ADH91120.1| NADH dehydrogenase (quinone) [Starkeya novella DSM 506]
          Length = 519

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 153/414 (36%), Positives = 220/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   S +D  + G +  +++ L  G   II EVK SGLRGRGGAG
Sbjct: 98  FLAKQTRLTFARCGIIDPASYADYRAHGGYKGLERALALGPAEIIEEVKKSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +KW  +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA 
Sbjct: 158 FPTAIKWKTVADAKAD-RKYIVCNADEGDSGTFADRMIMEGDPFELIEGMTIAGIAVGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y R E+     +++ A++   A G+LG N     Y  D+ V  GAGAY+CGEETAL
Sbjct: 217 KGFVYTRSEYPHAIWAMEKAIEVARAHGMLGVNIAGSQYSFDMEVRMGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L+SLEGK+G  R KPP PA+ GL+  PT +NNV S+  VP IL  G  +Y+ FG   +RG
Sbjct: 277 LDSLEGKRGVVRAKPPLPAHKGLFQKPTVINNVLSLTAVPHILADGGEFYANFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E +  IT  ELI    GG   G   + A   GG     +P    
Sbjct: 337 TMPIQIAGNVKFGGLFETAFGITLGELINDIGGGTASGRP-VKAAQVGGPLGAYVPT-WQ 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+      + +G   ++V D +TD+ K       F   ESCG+CTPCR G+   
Sbjct: 395 FDLPFDYEAFAAKDALIGHGGIVVFDETTDLAKMARFAMEFCSVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + +M+R++ G   +  +  L ++ + ++  ++CALG    +P+   + +F    
Sbjct: 455 VELMDRIMAGQRVEANLATLTDLCQTMKLGSLCALGGFTPYPVLSALNHFPEDF 508


>gi|318057838|ref|ZP_07976561.1| putative NADH dehydrogenase chain F [Streptomyces sp. SA3_actG]
 gi|318078936|ref|ZP_07986268.1| putative NADH dehydrogenase chain F [Streptomyces sp. SA3_actF]
          Length = 463

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/412 (47%), Positives = 256/412 (62%), Gaps = 7/412 (1%)

Query: 16  QGKSLSDSMSRG-HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +  +L         ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+   
Sbjct: 38  ESWTLDTYRRCDDGYEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GD 96

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +PHYLVVNADESEPGTCKD  ++   PH LIEG VIA +AI +  AFIY+RGE +    
Sbjct: 97  GKPHYLVVNADESEPGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLR 156

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E YA+G LG N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+P
Sbjct: 157 RLHEAVREAYAAGYLGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRP 216

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY CPT VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P  
Sbjct: 217 PFPAVEGLYACPTVVNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQ 276

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS
Sbjct: 277 YEAPLGITLRQLLDLSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGS 333

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  
Sbjct: 334 MLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRAD 393

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ++D L +++ NI G++ CALGD AA PI   +K FR   E  +D    C F 
Sbjct: 394 DLDKLLDIADNINGKSFCALGDGAASPIASSLKYFREEYEAHLD-GKGCPFD 444


>gi|158425077|ref|YP_001526369.1| putative NAD-dependent formate dehydrogenase beta subunit protein
           [Azorhizobium caulinodans ORS 571]
 gi|158331966|dbj|BAF89451.1| putative NAD-dependent formate dehydrogenase beta subunit protein
           [Azorhizobium caulinodans ORS 571]
          Length = 519

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 148/414 (35%), Positives = 224/414 (54%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   SL +  + G +  + K +E G    + +V  SGLRGRGGAG
Sbjct: 98  FLKKQTRLTFARCGIIDPLSLEEYKAHGGYKGLAKAIEIGPSATVEQVFESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA 
Sbjct: 158 FPTGIKWRTVAAAPAD-QRYIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y R E+    + ++ A+     +GLLG N +   YD D+ +  GAGAY+CGEETAL
Sbjct: 217 KGFVYCRSEYPLSLQVMEKAIAIARTAGLLGKNVAGSQYDFDLEMRMGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L+SLEGK+G  R KPP PA+ GL+G PT +NN+ S+A VP IL +G ++Y  FG   +RG
Sbjct: 277 LDSLEGKRGVVRAKPPLPAHKGLFGKPTVINNLISLATVPVILEKGGAFYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++ +    E +  I   EL+    GG   G   + AV  GG     LP  Q 
Sbjct: 337 TMPIQLAGNIKFGGIFETAFGIPLGELVYDIGGGTASGRP-VRAVQAGGPLGAYLPVHQ- 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+      + +G   ++V D + D+         F  HESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEAFAAKDALIGHGGIVVFDDTVDMAHMARFAMEFCSHESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  +++++ G  ++  + +L ++ + ++  ++CALG    +P+   + +F    
Sbjct: 455 VETLDKIIAGNRREANLAVLTDLCQTMKLGSLCALGGFTPYPVLSALTHFPEDF 508


>gi|170721053|ref|YP_001748741.1| NADH dehydrogenase subunit I F [Pseudomonas putida W619]
 gi|169759056|gb|ACA72372.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida W619]
          Length = 458

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/406 (40%), Positives = 233/406 (57%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L E   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQAKNGYAAARKALAEMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M  +PH L+EG +I++ A+ A+  +I++RGE+    +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L  G  +
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRSLENGQGR 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  GRT CA    A  P+   IK FR   E  +
Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433


>gi|163848445|ref|YP_001636489.1| NADH-quinone oxidoreductase subunit F [Chloroflexus aurantiacus
           J-10-fl]
 gi|163669734|gb|ABY36100.1| NADH-quinone oxidoreductase, F subunit [Chloroflexus aurantiacus
           J-10-fl]
          Length = 446

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 187/401 (46%), Positives = 255/401 (63%), Gaps = 9/401 (2%)

Query: 23  SMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
               G W+     L EK    I+  VK SGLRGRGGAGF TG+KW F+PK     P YL+
Sbjct: 35  YRRHGGWEAYRYALTEKTPADIVQMVKDSGLRGRGGAGFPTGIKWGFLPK--GVYPRYLL 92

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
            N DESEPGT  +  I+   PH LIEG  ++++AI A+ A+IY+RGEF     +L+ A+ 
Sbjct: 93  CNCDESEPGTFNNHQIIDKNPHQLIEGVALSAYAIEANTAYIYMRGEFAAAARTLERAIA 152

Query: 142 ECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
           + Y +G LG N    G+D+DI VH GAGAYICGEETAL+ESLEGK GQPRLKPPFPA  G
Sbjct: 153 QAYEAGFLGKNIFGTGFDLDIYVHRGAGAYICGEETALMESLEGKIGQPRLKPPFPAVAG 212

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           LYG PT +NNVE++A VP I+ +G +WY   G E + GTK FS+SGHVN P   E    +
Sbjct: 213 LYGKPTIINNVETLANVPRIVEKGVAWYRSHGTEKSPGTKCFSLSGHVNRPGNYELPFGV 272

Query: 261 TFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
              ELIE  ++ GG++GG   +  +IPGG+S P L A  +    +DY+ +   GS LG+ 
Sbjct: 273 PLRELIESPEYGGGMKGGRP-VKIIIPGGASAPWLTADHL-DVPLDYESVAAAGSMLGSG 330

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV-KGIAQKREIDL 377
           AVIV++ +       +++  F+KHESCG+CTPCREGT W++R + R+V +G A   +ID 
Sbjct: 331 AVIVLNDTVSAPHVAYKMDEFFKHESCGKCTPCREGTHWLVRTLHRMVEEGHATAADIDT 390

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L+ + + + G   C LG++A  PI+  ++ F    E  + +
Sbjct: 391 LHSIYRQMAGNCFCLLGESAVMPIKSALQLFPHEFEALVKR 431


>gi|71897771|ref|ZP_00679997.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1]
 gi|71732326|gb|EAO34380.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1]
          Length = 444

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/420 (49%), Positives = 265/420 (63%), Gaps = 8/420 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              I+T L+     S    +  G +  + KI E+    + +I+ VK S LRGRGGAGF T
Sbjct: 18  HQVIYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+  A+
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E  + A+ + Y  G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G  W+    +  N G+K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L A IPGG S+P L A Q+ G
Sbjct: 256 IFSVSGCVQQGGNFEVPLGTTFDELLEMAGG--LRPGRALKAAIPGGVSMPVLKAEQLHG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +GSGLG+  ++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I    
Sbjct: 374 VLERIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVHGQ 433


>gi|325971421|ref|YP_004247612.1| NADH dehydrogenase (quinone)., glutamate synthase (NADPH)
           [Spirochaeta sp. Buddy]
 gi|324026659|gb|ADY13418.1| NADH dehydrogenase (quinone)., Glutamate synthase (NADPH)
           [Spirochaeta sp. Buddy]
          Length = 1050

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 153/422 (36%), Positives = 238/422 (56%), Gaps = 4/422 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59
               +  I  +   +   ++++ ++ G + + +K+L    RD ++ EVK S LRGRGGAG
Sbjct: 140 FHAQKKLILRDAGLIDPANMAEYVAVGGYRSFEKVLGGMSRDEVLLEVKNSKLRGRGGAG 199

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  M K  S +P +L+ NADE +PG   +R+ M  +PH LIEG +IAS+A  A 
Sbjct: 200 FPTGLKWELMAKEPS-QPKFLICNADEGDPGAYMNRNEMESDPHMLIEGLLIASYATTAQ 258

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
              IYVR E+    + L+ A+++ YA GLLG N  +     D+ V  GAGA++CGEETAL
Sbjct: 259 EGIIYVRAEYPLAVQRLRTAIEQAYAVGLLGDNILERKVRFDLSVVEGAGAFVCGEETAL 318

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + SLEG+ G+ R+KPPFP+  G  G PTT+NN+E+   +P I+ +G++W++  G   + G
Sbjct: 319 IASLEGRAGRARVKPPFPSQKGYLGRPTTINNLETWCNIPLIIGKGSAWFARIGNPASPG 378

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+FS+ G V     VE  +      LI +  GG       + AV  GG S  C+PA  +
Sbjct: 379 TKVFSLVGKVKNTGLVELPLGEKLTTLIYEAGGGSVNPSKKIKAVQSGGPSGGCIPAS-L 437

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             + +DY+ L  +G+ +G+  ++VMD    ++ +      F   ESCG CTPCREG    
Sbjct: 438 FNSTIDYESLGALGAIMGSGGMVVMDSDNCMVDSARYFLEFTTKESCGTCTPCREGLSQA 497

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ R+ +G  +  ++  L E+  +I    +C LG +A  P+   +K F    E  I +
Sbjct: 498 LDLVSRICEGAGKLEDVKTLTELGNHISDTALCGLGQSAMNPVLTTLKYFPEEYESHIKR 557

Query: 419 YH 420
             
Sbjct: 558 SK 559


>gi|24372603|ref|NP_716645.1| NADH dehydrogenase I subunit F [Shewanella oneidensis MR-1]
 gi|24346628|gb|AAN54090.1|AE015546_7 NADH dehydrogenase I, F subunit [Shewanella oneidensis MR-1]
          Length = 461

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 167/407 (41%), Positives = 237/407 (58%), Gaps = 7/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  +D V K L +   D I++ VK +GL+GRGGAGF TG+KW  MPK  S
Sbjct: 36  QPVWLEEYQTKQGYDAVRKALGQMSPDEIVSTVKDAGLKGRGGAGFPTGVKWGLMPKDES 95

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH LIEG +I++ A+ A+  +I++RGE++    
Sbjct: 96  MNIRYLLCNADEMEPNTWKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAI 155

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ AV+E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 156 NLRRAVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 215

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA  G++G PT VNNVE++  VP I+  G +WY       +   GTKL   SG VN P
Sbjct: 216 PFPAVSGVWGKPTCVNNVETLCNVPAIIGNGVAWYHTLALPGSEDHGTKLMGFSGKVNNP 275

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  EL E + GG+R G+  L A  PGG+    L    +  A M   G+ ++
Sbjct: 276 GVWELPFGITARELFEGYAGGMRSGY-RLKAWQPGGAGTGFLLPEHL-DAQMYTAGIGKV 333

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S  ++  +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 334 GTRMGTGLAMAVDDSISMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRSLERGEGQ 393

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + ++  L ++   +  G+T CA    A  P+   IK FR   E  I 
Sbjct: 394 EGDLATLEQLCNFLGPGKTFCAHAPGAVEPLASAIKYFRSEFEAGIK 440


>gi|189218230|ref|YP_001938872.1| NADH-ubiquinone oxidoreductase chain F [Methylacidiphilum
           infernorum V4]
 gi|189185088|gb|ACD82273.1| NADH-ubiquinone oxidoreductase chain F [Methylacidiphilum
           infernorum V4]
          Length = 458

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 187/422 (44%), Positives = 259/422 (61%), Gaps = 23/422 (5%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            +   +  G +  + K L     +I+ EVK SGLRGRGGAGF TG+KW F+    + +P 
Sbjct: 22  DIDCYLQHGGYQVLKKALSLDPFFIVQEVKKSGLRGRGGAGFPTGVKWGFINHEKNTKPV 81

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADESEPGT KDR I+  +PH LIEG +I+++A  AH  +IY+RGEF R  E L+ 
Sbjct: 82  YLLCNADESEPGTFKDRQIIYKDPHQLIEGMIISAYANRAHLGYIYIRGEFARGAEILEK 141

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FP 196
           A+ E      LG N    GYD++I V  GAGAYICGEET L+ESLEGK+  PR+KPP FP
Sbjct: 142 ALSEARERNFLGKNILGSGYDLEIYVFRGAGAYICGEETGLIESLEGKRAYPRIKPPYFP 201

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A +GLY CPT VNNVE++  V  I+  G   ++  G  NN GT+++ +SG VN P   E 
Sbjct: 202 AVLGLYMCPTIVNNVETLCHVKHIVDMGGEAFAQIGTPNNTGTRIWCVSGDVNKPGYYEY 261

Query: 257 SMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ------------------ 297
               ITF EL+ + CGGIR G   L AVIPGGSS   L A +                  
Sbjct: 262 PCGAITFGELLYEVCGGIRNGNK-LKAVIPGGSSAKVLRADKKYKIPKKKSDGTTEMVEV 320

Query: 298 -MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +D+D +   GS  G+  +IVMD + D+++ +  ++ FY HESCGQCTPCREG+ 
Sbjct: 321 GLEDIPLDFDTVAATGSMSGSGGIIVMDDTRDMVECLRNIAEFYAHESCGQCTPCREGSL 380

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           WM ++++R+ +G  +K +  LL +V+ +I GRTICA G+A +WP+Q  ++ F      ++
Sbjct: 381 WMKKILDRICRGKGRKEDSQLLLDVANHIAGRTICAFGEACSWPVQSFVEMFEEEFTAKV 440

Query: 417 DQ 418
            +
Sbjct: 441 KE 442


>gi|85858925|ref|YP_461127.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85722016|gb|ABC76959.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 638

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 163/420 (38%), Positives = 232/420 (55%), Gaps = 7/420 (1%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGM 64
            R+   +  +   S+   + +G +  + K L +   D +I  VK SGLRGRGGAGF  G+
Sbjct: 211 QRLTEKIGSIDPLSVDSYLEKGGYAAIKKALAEYQPDDVIAIVKDSGLRGRGGAGFPAGV 270

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KWSF+PK   D   Y++ NADE EPGT KDR +M   PH L+EG ++  +A GA   +IY
Sbjct: 271 KWSFLPK--GDMQKYVICNADEGEPGTYKDRILMEENPHGLLEGMMLCGYATGATVGYIY 328

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           +RGE+ R  E LQ A+D+    G+LG N     +  DI +  G GAY+CGEE++L+ S+E
Sbjct: 329 IRGEYRRSIERLQRAIDQAREKGILGDNIFGSSFRFDIFIKEGGGAYVCGEESSLMNSME 388

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+G PR +PPFPA  G    P+ VNNVE+ A VP I+ +GA+WY   G E   GTKL+ 
Sbjct: 389 GKRGYPRFRPPFPAGAGFLAKPSNVNNVETYASVPMIIEKGAAWYKSVGLETCTGTKLYC 448

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           +SG +N    VE  M  T  E+IE    GI+           GGS+   L    +    +
Sbjct: 449 LSGKLNRTGLVEMPMGTTLREIIETFGKGIK-NGKTFKFAQVGGSAGGILGPE-LMDLPL 506

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D D   + G  LG+  V+V D  T  +  +  +  F++HESCGQC PCR GT  +  +  
Sbjct: 507 DIDSTIKAGVTLGSGVVLVCDEDTCPVDFLLDVLNFFEHESCGQCVPCRVGTRQLHHLAR 566

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           +   G A   ++DL+ E +K ++  ++CALG +   PI  ++K FR       D    C 
Sbjct: 567 KFATGTAVPGDLDLMVEKAKLMK-NSLCALGQSPILPITTMLKYFREDFLRHCDPSLCCP 625


>gi|282855269|ref|ZP_06264601.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           J139]
 gi|282581857|gb|EFB87242.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           J139]
 gi|314923989|gb|EFS87820.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL001PA1]
 gi|314965053|gb|EFT09152.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL082PA2]
 gi|314983073|gb|EFT27165.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA3]
 gi|315090606|gb|EFT62582.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA4]
 gi|315093907|gb|EFT65883.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL060PA1]
 gi|315104126|gb|EFT76102.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA2]
          Length = 444

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/399 (47%), Positives = 259/399 (64%), Gaps = 5/399 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
              L +   +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  
Sbjct: 18  SWKLLNYERQGGYAGLRKALTMPPDEVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVN DESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +
Sbjct: 77  PTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKAAFIYIRGEVLHVVRRV 136

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q AV E Y++G +G N    GYD++++VH GAGAYICGEETALL+SLEG++GQPRL+PPF
Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLEVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT +NNVESI+ VP+ILR G  W+   G E + G  ++S+SGH+ +P   E
Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLTHPGQYE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  +L+    GG+R G + L    PGGSS P L    +    +DY+G+    + L
Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+   D +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++
Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDV 373

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           D L +++ NI GR+ CAL D A   ++G I +FR   E 
Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412


>gi|302521199|ref|ZP_07273541.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB78]
 gi|302430094|gb|EFL01910.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sp. SPB78]
          Length = 461

 Score =  450 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/412 (47%), Positives = 256/412 (62%), Gaps = 7/412 (1%)

Query: 16  QGKSLSDSMSRG-HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +  +L         ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+   
Sbjct: 36  ESWTLDTYRRCDDGYEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GD 94

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +PHYLVVNADESEPGTCKD  ++   PH LIEG VIA +AI +  AFIY+RGE +    
Sbjct: 95  GKPHYLVVNADESEPGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLR 154

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E YA+G LG N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+P
Sbjct: 155 RLHEAVREAYAAGYLGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRP 214

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY CPT VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P  
Sbjct: 215 PFPAVEGLYACPTVVNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQ 274

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS
Sbjct: 275 YEAPLGITLRQLLDLSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGS 331

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  
Sbjct: 332 MLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRAD 391

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ++D L +++ NI G++ CALGD AA PI   +K FR   E  +D    C F 
Sbjct: 392 DLDKLLDIADNINGKSFCALGDGAASPIASSLKYFREEYEAHLD-GKGCPFD 442


>gi|15836913|ref|NP_297601.1| NADH-ubiquinone oxidoreductase, NQO1 subunit [Xylella fastidiosa
           9a5c]
 gi|9105133|gb|AAF83121.1|AE003884_6 NADH-ubiquinone oxidoreductase, NQO1 subunit [Xylella fastidiosa
           9a5c]
          Length = 444

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/418 (49%), Positives = 265/418 (63%), Gaps = 8/418 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              I+T L+     S    +  G +  + KI E+    + +I+ VK S LRGRGGAGF T
Sbjct: 18  HQVIYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+  A+
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E  + A+ + Y  G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G  W+    +  N G+K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L A IPGG S+P L A Q+ G
Sbjct: 256 IFSVSGCVQQGGNFEVPLGTTFDELLEMAGG--LRPGRALKAAIPGGVSMPVLKAEQLHG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +GSGLG+  ++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I  
Sbjct: 374 VLERIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVH 431


>gi|50843381|ref|YP_056608.1| NADH dehydrogenase I chain F [Propionibacterium acnes KPA171202]
 gi|289425637|ref|ZP_06427409.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           SK187]
 gi|289426990|ref|ZP_06428709.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           J165]
 gi|50840983|gb|AAT83650.1| NADH dehydrogenase I chain F [Propionibacterium acnes KPA171202]
 gi|289153938|gb|EFD02631.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           SK187]
 gi|289159812|gb|EFD07997.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           J165]
 gi|313763289|gb|EFS34653.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL013PA1]
 gi|313793603|gb|EFS41643.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA1]
 gi|313802886|gb|EFS44099.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL110PA2]
 gi|313806332|gb|EFS44848.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA2]
 gi|313813679|gb|EFS51393.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL025PA1]
 gi|313814971|gb|EFS52685.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL059PA1]
 gi|313819443|gb|EFS57157.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL046PA2]
 gi|313821249|gb|EFS58963.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA1]
 gi|313822296|gb|EFS60010.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL036PA2]
 gi|313826146|gb|EFS63860.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL063PA1]
 gi|313829365|gb|EFS67079.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL063PA2]
 gi|313838154|gb|EFS75868.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL086PA1]
 gi|314916743|gb|EFS80574.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA4]
 gi|314919131|gb|EFS82962.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA1]
 gi|314921211|gb|EFS85042.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL050PA3]
 gi|314930361|gb|EFS94192.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL067PA1]
 gi|314956144|gb|EFT00540.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL027PA1]
 gi|314959677|gb|EFT03779.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA1]
 gi|314962251|gb|EFT06352.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA2]
 gi|314963235|gb|EFT07335.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL082PA1]
 gi|314969778|gb|EFT13876.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA1]
 gi|314979336|gb|EFT23430.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL072PA2]
 gi|314986332|gb|EFT30424.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA2]
 gi|314988571|gb|EFT32662.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA3]
 gi|315079688|gb|EFT51676.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL053PA2]
 gi|315083921|gb|EFT55897.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL027PA2]
 gi|315085058|gb|EFT57034.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL002PA3]
 gi|315089487|gb|EFT61463.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL072PA1]
 gi|315098099|gb|EFT70075.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL059PA2]
 gi|315102683|gb|EFT74659.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL046PA1]
 gi|315107937|gb|EFT79913.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL030PA1]
 gi|315108825|gb|EFT80801.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL030PA2]
 gi|327325714|gb|EGE67511.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL096PA3]
 gi|327333127|gb|EGE74854.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL097PA1]
 gi|327447753|gb|EGE94407.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL013PA2]
 gi|327451636|gb|EGE98290.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA3]
 gi|327452289|gb|EGE98943.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL083PA2]
 gi|327452506|gb|EGE99160.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL092PA1]
 gi|328752122|gb|EGF65738.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL025PA2]
 gi|328755066|gb|EGF68682.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL020PA1]
 gi|328757014|gb|EGF70630.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL087PA1]
 gi|332676324|gb|AEE73140.1| NADH-quinone oxidoreductase subunit F [Propionibacterium acnes 266]
          Length = 444

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 191/399 (47%), Positives = 259/399 (64%), Gaps = 5/399 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
              L +   +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  
Sbjct: 18  SWKLLNYERQGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVN DESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +
Sbjct: 77  PTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRV 136

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q AV E Y++G +G N    GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPF
Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT +NNVESI+ VP+ILR G  W+   G E + G  ++S+SGH+ +P   E
Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  +L+    GG+R G + L    PGGSS P L    +    +DY+G+    + L
Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+   D +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++
Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDV 373

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           D L +++ NI GR+ CAL D A   ++G I +FR   E 
Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412


>gi|327325781|gb|EGE67573.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL103PA1]
          Length = 444

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/399 (47%), Positives = 259/399 (64%), Gaps = 5/399 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
              L +   +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  
Sbjct: 18  SWKLLNYERQGGYAGLRKALTMPPDEVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVN DESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +
Sbjct: 77  PTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKAAFIYIRGEVLHVVRRV 136

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q AV E Y++G +G N    GYD++++VH GAGAYICGEETALL+SLEG++GQPRL+PPF
Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLEVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT +NNVESI+ VP+ILR G  W+   G E + G  ++S+SGH+ +P   E
Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLTHPGQYE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  +L+    GG+R G + L    PGGSS P L    +    +DY+G+    + L
Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+   D +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++
Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDV 373

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           D L +++ NI GR+ CAL D A   ++G I +FR   E 
Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412


>gi|333025114|ref|ZP_08453178.1| putative NADH dehydrogenase chain F [Streptomyces sp. Tu6071]
 gi|332744966|gb|EGJ75407.1| putative NADH dehydrogenase chain F [Streptomyces sp. Tu6071]
          Length = 463

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/412 (47%), Positives = 256/412 (62%), Gaps = 7/412 (1%)

Query: 16  QGKSLSDSMSRG-HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +  +L         ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+   
Sbjct: 38  ESWTLDTYRRCDDGYEGLKKALAMSPDDLIAYVKDAGLRGRGGAGFPTGMKWQFIPQ-GD 96

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +PHYLVVNADESEPGTCKD  ++   PH LIEG VIA +AI +  AFIY+RGE +    
Sbjct: 97  GKPHYLVVNADESEPGTCKDIPLLFANPHALIEGIVIACYAIRSSHAFIYLRGEVVPVLR 156

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E YA+G LG N    G D+++ VH GAGAYICGEETALL+SLEG++GQPRL+P
Sbjct: 157 RLHEAVREAYAAGYLGENILGSGIDLELTVHAGAGAYICGEETALLDSLEGRRGQPRLRP 216

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY CPT VNNVESIA VP IL RG  W+   G E + G  L+S+SGHV  P  
Sbjct: 217 PFPAVEGLYACPTVVNNVESIASVPAILNRGKEWFRSMGSEKSPGFTLYSLSGHVASPGQ 276

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  + IT  +L++   G        L    PGGSS P      +    +DY+G+   GS
Sbjct: 277 YEAPLGITLRQLLDLSGGM--RPGHRLKFWTPGGSSTPMFTEEHL-DVPLDYEGVGAAGS 333

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  G  +  
Sbjct: 334 MLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGRAD 393

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ++D L +++ NI G++ CALGD AA PI   +K FR   E  +D    C F 
Sbjct: 394 DLDKLLDIADNINGKSFCALGDGAASPIASSLKYFREEYEAHLD-GKGCPFD 444


>gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16]
 gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16]
          Length = 626

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 151/426 (35%), Positives = 226/426 (53%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N      + + + +++  +   +K L E   + I  E+  SGLRGRGG 
Sbjct: 141 FYHKQHRIVLENCGTTDAEDIDEYLAKDGYSAFEKALFEMTDEAICKEILDSGLRGRGGG 200

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW  + +       Y+V N DE +PG   DR IM   PH++IEG +IA  A G+
Sbjct: 201 GFPAGRKWESVRQQPKG-KKYVVCNGDEGDPGAFMDRSIMEGNPHSIIEGMLIAGVAAGS 259

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+      L+ A+      GLLG +     +   + V+ GAGA++CGE +A
Sbjct: 260 DEGYIYVRAEYPLAVSRLRNAIARAEELGLLGDHILGTDFSFHLHVNRGAGAFVCGEGSA 319

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L  S+EG +G PR+KPP     GL+  PT +NNVE+ + VP I+R G+ WY   G E + 
Sbjct: 320 LTASIEGNRGMPRVKPPRTVEHGLWAQPTVLNNVETFSTVPLIIRNGSEWYRSIGTEKSP 379

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK F+++G+V     +E  M  T  E+I    GGI+       AV  GG S  CL    
Sbjct: 380 GTKAFALTGNVVNTGLIEVPMGTTLREVIFDIGGGIK-DGKKFKAVQIGGPSGGCLTEEH 438

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    MD+D LK++G+ +G+  ++VMD  T +++       F ++ESCG+C PCREGT  
Sbjct: 439 L-DMPMDFDSLKKVGAMIGSGGLVVMDEDTCMVEVARFFMNFTQNESCGKCVPCREGTRR 497

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+V       ++DLL  ++  I   ++C LG +A  P+Q  +K FR      + 
Sbjct: 498 MLEILTRIVNNEGSLEDLDLLETLANTITETSLCGLGQSACKPVQSTLKYFRDEYLAHVV 557

Query: 418 QYHRCN 423
             H C 
Sbjct: 558 DKH-CP 562


>gi|304311499|ref|YP_003811097.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1]
 gi|301797232|emb|CBL45452.1| NADH dehydrogenase I, chain F [gamma proteobacterium HdN1]
          Length = 455

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 178/416 (42%), Positives = 253/416 (60%), Gaps = 10/416 (2%)

Query: 9   FTNLYGLQGKSLSD---SMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGM 64
            T  Y   G+S+ D     +   +  + K L E     +  E+KASGLRGRGGAGF TG+
Sbjct: 29  LTWRYSTHGQSILDIKTYEAMEGYAALRKALTEMKPADVQAEIKASGLRGRGGAGFPTGV 88

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KWS +P        Y+V NADE EPGT KDR +M   PH L+E  +++++AI A  A+I+
Sbjct: 89  KWSLIPMGPDAGAKYMVCNADEMEPGTFKDRMLMETNPHQLVESMIVSAYAIQAKRAYIF 148

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           +RGE+I   E L AA+ E +A+G LG N    G+ VD++VH GAG YICGEETAL+ SLE
Sbjct: 149 LRGEYIEAAERLNAAIQEAHAAGYLGENILGSGWGVDLMVHTGAGRYICGEETALINSLE 208

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKL 241
           G++  PR KPPFP   GL+G PT VNNVE+++ VP IL RGA W+ G   G   + GTKL
Sbjct: 209 GRRANPRSKPPFPQIAGLWGRPTIVNNVETVSNVPAILLRGADWFKGLSQGLSGDAGTKL 268

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           + +SG V +P   E  + IT  EL+  H GG+R G + +   +PGG+S   L    +   
Sbjct: 269 YGVSGRVKHPGLWELPIGITCRELLYNHAGGMREGLEMV-TWLPGGASTDFLMPEHL-DL 326

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MDYD + + GS LGT  ++V+D   +I+  +  L  F+  ESCG CTPCR+G  W +++
Sbjct: 327 AMDYDTIMKNGSRLGTGLIMVVDNRHNIVSVVRNLEQFFARESCGWCTPCRDGLPWTVKL 386

Query: 362 MERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++ +  G  Q  +++ L ++++ +  G+T CAL   A  P+Q  +K FRP  E+ I
Sbjct: 387 LQSIEAGQGQAGDLETLDQMTRFLGPGKTFCALAPGAMEPLQSALKFFRPEFEKGI 442


>gi|27378248|ref|NP_769777.1| NADH dehydrogenase I chain F [Bradyrhizobium japonicum USDA 110]
 gi|27351395|dbj|BAC48402.1| NADH dehydrogenase I chain F [Bradyrhizobium japonicum USDA 110]
          Length = 518

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 147/413 (35%), Positives = 221/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +  +SL D  + G +  +++ L  G + I+ EV ASGLRGRGGAGF
Sbjct: 98  LKRQTRLTFARCGVIDPRSLEDYRAHGGYKGLERALSLGSEAILTEVTASGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  +D   ++V NADE + GT  DR IM  +P  +IEG   A   +GA  
Sbjct: 158 PTGIKWKTVAQAKAD-RKFIVCNADEGDSGTFADRMIMEGDPFLVIEGMTTAGITVGATK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E+++AA+      G LG       Y  D+ V  GAGAY+CGEET+LL
Sbjct: 217 GYIYIRSEYPHAVEAMKAAIQAAKRGGYLGDKIGGSTYSFDLEVRVGAGAYVCGEETSLL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG++G  R KPP PA+ GL+G PT +NNV S A +P IL  GA  Y+ FG   +RGT
Sbjct: 277 ESLEGRRGIVRAKPPLPAHHGLFGKPTVINNVLSFAAIPFILAEGAKAYADFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +    E +  +T  EL++   GG       + AV  GG      P   + 
Sbjct: 337 MPIQLAGNIRHGGLYETAFGVTLGELVDDIGGGT-FTGRPVRAVQVGGPLGAYFPRA-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   ++V D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPFDYEAFAARDGLIGHGGIVVFDDSVDMRRQARFAMEFCAVESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +E+++ G      + L+ ++   ++  ++CALG    +P+   +K+FR   
Sbjct: 455 ETIEKIINGERVSENLALVEDLCNTMKFGSLCALGGFTPYPVLSALKHFREDF 507


>gi|167034691|ref|YP_001669922.1| NADH dehydrogenase subunit I F [Pseudomonas putida GB-1]
 gi|166861179|gb|ABY99586.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida GB-1]
          Length = 454

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 166/406 (40%), Positives = 235/406 (57%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L++  S+  +    K L    +D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLAEYESKNGYAAARKALAQMSQDDIVQAVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M  +PH L+EG +I++ A+ A+  +I++RGE+    +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L KG  +
Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALEKGQGR 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  GRT CA    A  P+   IK FR   E  +
Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433


>gi|315081016|gb|EFT52992.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL078PA1]
          Length = 444

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/399 (47%), Positives = 258/399 (64%), Gaps = 5/399 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
              L +   +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  
Sbjct: 18  SWKLLNYERQGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVN DESEPGTCKD  +M   PH L+EG +IAS+AI A  AFIY+RGE +     +
Sbjct: 77  PTYLVVNGDESEPGTCKDMPLMMASPHILVEGVIIASYAIKAKMAFIYIRGEVLHVVRRV 136

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q AV E Y++G +G N    GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPF
Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT +NNVESI+ VP+ILR G  W+   G E + G  ++S+SGH+ +P   E
Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNGKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  +L+    GG+R G + L    PGGSS P L    +    +DY+G+    + L
Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+   D +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++
Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDV 373

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           D L +++ NI GR+ CAL D A   ++G I +FR   E 
Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412


>gi|289523836|ref|ZP_06440690.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502926|gb|EFD24090.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 579

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 153/423 (36%), Positives = 227/423 (53%), Gaps = 5/423 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
              +Q R +      +   S+ D ++   ++ +   LE G D II +V  S LRGRGG G
Sbjct: 89  FYANQHRLVLRRSGHIDPTSIEDYIATDGYEGLALALELGPDEIIRQVTDSYLRGRGGGG 148

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW        D P Y++ N DE +PG   DR +M  +PH++IEG +I ++A+GA 
Sbjct: 149 FRTGYKWKSCRDAE-DFPKYVIANGDEGDPGAFMDRSLMEGDPHSVIEGMIIGAYAVGAR 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVR E+      L+ A+++    GLLG N     +D DI +  G GA++CGE +AL
Sbjct: 208 EGYIYVRNEYPLAVRRLEIAIEKAREWGLLGKNILGSAFDFDIQICKGGGAFVCGESSAL 267

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG  G PR+K       GL+  PT +NNVE+ A VP IL +G  WY   G + N G
Sbjct: 268 MRSIEGFPGVPRVKYIHATEQGLWDKPTVLNNVETWANVPIILMKGVEWYKTLGTDRNHG 327

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+F++ G V     VE  M +T  ++I    GG         AV  GG S  C+PA  +
Sbjct: 328 TKIFALVGKVKNTGLVEVPMGVTLRKIIYDIGGGTLKD-KAFKAVQTGGPSGGCIPAS-L 385

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D+D L + GS +G+  +IVMD  + ++        F   ESCG+CTPCREG   +
Sbjct: 386 LDLPVDFDTLVKSGSMMGSGGMIVMDERSCMVDVAKYFIDFLVEESCGKCTPCREGLKVL 445

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +++  L +G    +++ LL +++K +    +C LG  AA P+   +K F    EE +D 
Sbjct: 446 QKLLRDLSEGKGSLKDVALLEDMAKELSKTALCGLGKTAANPVLSTLKYFHEEYEEHVDG 505

Query: 419 YHR 421
           Y R
Sbjct: 506 YCR 508


>gi|114777366|ref|ZP_01452363.1| NADH-quinone oxidoreductase, F subunit [Mariprofundus ferrooxydans
           PV-1]
 gi|114552148|gb|EAU54650.1| NADH-quinone oxidoreductase, F subunit [Mariprofundus ferrooxydans
           PV-1]
          Length = 425

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 205/399 (51%), Positives = 266/399 (66%), Gaps = 5/399 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +L+ +   G +  +  +L++     I++E+K SGLRGRGGAGF TG+KWSF+P+    +P
Sbjct: 24  TLAVARKHGAYAFLPTVLKEFTAAKIVDEMKLSGLRGRGGAGFPTGLKWSFVPRNT-GKP 82

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDRDIMR +PH LIEG ++A FA+    A+IYVRGEF+ E   + 
Sbjct: 83  TYLLCNADEGEPGTFKDRDIMRFDPHLLIEGMIMAGFALNVRDAYIYVRGEFLHEANVMN 142

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ E YA+ LLG N    GY + + VH GAGAYICGEETAL+ESLEGK G+PR KPPFP
Sbjct: 143 EAIREAYAANLLGENILGSGYSMHLTVHRGAGAYICGEETALIESLEGKPGRPRFKPPFP 202

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  G Y CPT VNNVE++A VP IL  G +W++  G  NN G K+FS+SGHVN P   E 
Sbjct: 203 AVEGFYRCPTVVNNVETLATVPAILEHGGAWHAAIGVPNNTGCKIFSVSGHVNKPGNYEV 262

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M  +   LIE++CGG+         VIPGGSS P L A     A + YDG+ + GS LG
Sbjct: 263 PMGTSLKTLIEEYCGGL-QHGSVPKVVIPGGSSTPWLTAEHYE-APLTYDGMIKAGSMLG 320

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           + A+IVMD + D+I    RL+ FY HESCGQCTPCREGTGW+ R+M R+  G A   +I 
Sbjct: 321 SGAIIVMDETADLIAVTRRLAHFYAHESCGQCTPCREGTGWLERIMIRVENGQACAEDIQ 380

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           +L + + ++ GRTICAL D AA PI  ++K+F   +  R
Sbjct: 381 VLSDAATHMAGRTICALADGAAAPILSMLKHFPDEVRAR 419


>gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 634

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 147/426 (34%), Positives = 238/426 (55%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q +I   N   +  +++ D++  G +  + K+L    ++ +I EV  SGLRGRGG 
Sbjct: 143 FYKKQVKIALKNCGVIDPENMEDALGVGAYTALGKVLTTMTQEEVIKEVSESGLRGRGGG 202

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +   D   Y++ NADE +PG   DR I+  +P+ ++E   I  +AIGA
Sbjct: 203 GFPTGRKWEAARRANGD-VKYVICNADEGDPGAFMDRAILEGDPNLVLEAMAICGYAIGA 261

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              +IY+R E+      L+ A+ +    GLLGSN    G++ DI + +GAGA++CGE TA
Sbjct: 262 SKGYIYIRAEYPLAVHRLKVALKQAKDIGLLGSNILNTGFNFDIEIKYGAGAFVCGEATA 321

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+P +KPP  +  GL+  PT VNNVE+ A V  I+  GA WYS  G E + 
Sbjct: 322 LIHSIEGLRGEPTMKPPRTSEKGLWQRPTCVNNVETFANVSQIINNGAKWYSSIGAEKSA 381

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G++N    VE  M +   +++ +  GGI      L A+  GG S  C+P   
Sbjct: 382 GTKVFALAGNINNVGLVEIPMGMPLRDIVYEIGGGIINN-KALKAIQTGGPSGGCIPVEY 440

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    ++YD L  +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 441 L-DLPIEYDTLTSIGSMMGSGGMIVMDEDNCMVDIAKFYLEFSVDESCGKCTPCRIGNKR 499

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ +++++  G A + +++ + E+ + +   ++C LG+AA  P+   +K F    +E + 
Sbjct: 500 ILELLKKITDGTAVEEDLEKINELCEVVRDASLCGLGEAAPNPVLSTLKFFNNEYKEHVI 559

Query: 418 QYHRCN 423
              +C 
Sbjct: 560 D-KKCT 564


>gi|71275685|ref|ZP_00651970.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Dixon]
 gi|71897859|ref|ZP_00680085.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1]
 gi|170729494|ref|YP_001774927.1| NADH dehydrogenase (quinone) [Xylella fastidiosa M12]
 gi|71163576|gb|EAO13293.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Dixon]
 gi|71732414|gb|EAO34468.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa Ann-1]
 gi|167964287|gb|ACA11297.1| NADH dehydrogenase (quinone) [Xylella fastidiosa M12]
          Length = 444

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/418 (49%), Positives = 266/418 (63%), Gaps = 8/418 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              I+T L+     S    +  G +  + KI E+    + +I+ VK S LRGRGGAGF T
Sbjct: 18  HQVIYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+  A+
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E  + A+ + Y  G LG N    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYTHGWLGKNVLGSGVDIDIYAVLGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G  W+    +  N G+K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L A IPGG S+P L A Q++G
Sbjct: 256 IFSVSGCVQQGGNFEVPLGTTFDELLEMAGG--LRPGRALKAAIPGGVSMPVLKAEQLQG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +GSGLG+  ++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I  
Sbjct: 374 VLERIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVH 431


>gi|54024631|ref|YP_118873.1| putative NADH dehydrogenase I chain F [Nocardia farcinica IFM
           10152]
 gi|54016139|dbj|BAD57509.1| putative NADH dehydrogenase I chain F [Nocardia farcinica IFM
           10152]
          Length = 441

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 196/415 (47%), Positives = 263/415 (63%), Gaps = 9/415 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           Q  +L        ++ +   L    D +I  VK +GLRGRGGAGF TGMKW F+P+    
Sbjct: 16  QSWTLDTYRRHDGYEGLRIALGMEPDQVIQTVKDAGLRGRGGAGFPTGMKWGFIPQGPGP 75

Query: 76  R----PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
                PHYLVVNADESEPGTCKD  ++   PH L+EG +IAS+AI A+ AFIY+RGE + 
Sbjct: 76  DGTVKPHYLVVNADESEPGTCKDIPLLMATPHALVEGAIIASYAIRANTAFIYLRGEVVP 135

Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
               L+AAVD+ YA+GLLG +    G+D+++IVH GAGAYICGEETALL+SLEG++GQPR
Sbjct: 136 VLRRLRAAVDQAYAAGLLGRDILGSGFDLELIVHAGAGAYICGEETALLDSLEGRRGQPR 195

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
           L+PPFPA  GLY CPT VNNVESIA VP ILR G  W+   G E + G  ++S+SGHV  
Sbjct: 196 LRPPFPAVAGLYACPTVVNNVESIASVPPILRYGTDWFRSMGSEKSPGFTIYSLSGHVTR 255

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E  + IT  EL++   G        L    PGGSS P      +    +DY+G+  
Sbjct: 256 PGQYEAPLGITLRELLDYADG--VRAGHRLKFWTPGGSSTPLFTDEHL-DVPLDYEGVAA 312

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+++++ R+  G  
Sbjct: 313 AGSMLGTKALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQLLRRIETGGG 372

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            + ++D L +++ +I G++ CALGD AA PI   +K FR      + +   C F 
Sbjct: 373 TEADLDTLLDITDSINGKSFCALGDGAASPIVSSVKYFRDEYLAHM-RGDGCPFD 426


>gi|330958155|gb|EGH58415.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 452

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/406 (40%), Positives = 231/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLEEYQAKDGYAAARKALTQQTPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++    
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAR 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIEKGQGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FRP  E  I
Sbjct: 388 PGDIETLQGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRPEFEAGI 433


>gi|104782525|ref|YP_609023.1| NADH dehydrogenase I subunit F [Pseudomonas entomophila L48]
 gi|95111512|emb|CAK16232.1| NADH dehydrogenase I chain F [Pseudomonas entomophila L48]
          Length = 454

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 167/406 (41%), Positives = 235/406 (57%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L++  S+  +    K L E   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLAEYESKNGYAAARKALAEMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M  +PH L+EG +I++ A+ A+  +I++RGE+    +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L KG  +
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALEKGQGR 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  GRT CA    A  P+   IK FR   E  +
Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433


>gi|193215709|ref|YP_001996908.1| NADH-quinone oxidoreductase subunit F [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089186|gb|ACF14461.1| NADH-quinone oxidoreductase, F subunit [Chloroherpeton thalassium
           ATCC 35110]
          Length = 432

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 191/399 (47%), Positives = 252/399 (63%), Gaps = 5/399 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
             +    + G + N+ K L    + I+ EVK SGLRGRGGAGF TGMKW F+ K      
Sbjct: 19  HRIEVYEAGGGYQNLRKALVMKPEEIVGEVKKSGLRGRGGAGFPTGMKWGFVGKAKP--- 75

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL VN DESEPG+ KDR I    PH LIEGC+I+ +A+     +IY+RGE+ +  + ++
Sbjct: 76  RYLAVNGDESEPGSFKDRQIFEFNPHQLIEGCLISCYALDVETCYIYIRGEYAKWIDIVE 135

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ E    G +G N     +  +I VH GAGAYICGEE+AL+ S+EGK+  PRLKPPFP
Sbjct: 136 TALAEARQKGYVGKNILGKDFSAEIYVHRGAGAYICGEESALMNSIEGKRAYPRLKPPFP 195

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT +NNVE+I  +P I+  GA  YS  G  ++ G  L+ +SGHVN P   E 
Sbjct: 196 AVVGLWGQPTVINNVETITNIPLIIEIGAEAYSKIGAPDHPGPMLYGLSGHVNKPGIYEY 255

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              +   +LI    G    G   L AVIPGGSS+P L A  + G  M+ D LK+ G+ +G
Sbjct: 256 PSGMAITDLIYDIGG-GIRGGKKLKAVIPGGSSMPILRADMIEGVTMNADSLKKAGTSIG 314

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           TA +I+MD  TDI+ AI RL+ FY HESCGQCTPCREGTGW+  + ++ ++  A+ R+ID
Sbjct: 315 TAGMIIMDEDTDIVAAIARLTHFYHHESCGQCTPCREGTGWIEHIYKKFLRDEAEPRDID 374

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           LL  + K IE RTICAL D AAWP++  I+ FR   E+ 
Sbjct: 375 LLLSLCKQIEQRTICALADGAAWPVRFSIERFREEYEKH 413


>gi|66219967|gb|AAY43000.1| Nqo1 [Rhodothermus marinus]
          Length = 443

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/405 (48%), Positives = 262/405 (64%), Gaps = 6/405 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
                L    + G +  + ++L         +I EVK S LRGRGGAGF TG+KWSFMP 
Sbjct: 25  RDLHRLEVYEAHGGYQTLREVLTSDRWDPKSVIEEVKKSKLRGRGGAGFPTGLKWSFMP- 83

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
              DRP +L  N DESEPGT KDR +M   PH + EG +IA +A+     ++YVRGEF R
Sbjct: 84  PVDDRPRFLCCNGDESEPGTFKDRQLMEFNPHQIFEGILIACYAMSVRTCYLYVRGEFAR 143

Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
             E ++  +++ YA G +G N     +  DI++H GAGAYICGEE++L+ES+EGK+  PR
Sbjct: 144 WIEHMERELEKLYAKGYVGKNIMGTDFSADIVIHKGAGAYICGEESSLMESVEGKRAYPR 203

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
           +KPPFPA  GL+G PTT+NNVE++A VP ILR G  W++  G  N+ G  L+ ISGHVN 
Sbjct: 204 IKPPFPAQRGLWGYPTTINNVETLANVPLILRNGGEWFASIGAPNHPGPVLYGISGHVNR 263

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E    +   +LI +  GGIRGG   L AVIPGGSS P L A  + G  MD + L+E
Sbjct: 264 PGVYEYPTGMLITDLIYEVAGGIRGG-KKLKAVIPGGSSTPPLRADMIDGVTMDAESLRE 322

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS +GTA ++V+D  TD++  + R++ FY HESCGQCTPCREGTGW+  ++ R+ +G  
Sbjct: 323 AGSMMGTAGLLVLDEDTDMVSWLRRVAHFYAHESCGQCTPCREGTGWLENILTRIEEGEG 382

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           + R++DLL ++   +EGRT+CAL DAAAWP++  I  FR   E R
Sbjct: 383 RLRDLDLLLDLCDQMEGRTVCALADAAAWPVRYTILRFREEFEAR 427


>gi|91200367|emb|CAJ73413.1| strongly similar to NADH dehydrogenase I chain F [Candidatus
           Kuenenia stuttgartiensis]
          Length = 427

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 156/413 (37%), Positives = 236/413 (57%), Gaps = 7/413 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP-KVCS 74
             +L +    G +  + K+L E     +   +K S LRGRGGAGF TGMKWSF+P    +
Sbjct: 18  PMNLKEYEQAGGYQALRKVLKEMQPQDVQKIIKDSNLRGRGGAGFPTGMKWSFVPLGDDA 77

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +  YL+ NADE EPG  KDR ++   PH LIEG +IA++AI A+ +++ +R  +    E
Sbjct: 78  PKDKYLICNADEMEPGAFKDRLLLEGNPHQLIEGMIIAAYAIQANKSYVVLRWAYKEAAE 137

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            +  A+ E   +G +G N    GY +++ +H   G YI GEETA LE+LEGK+  PR KP
Sbjct: 138 LIFKALAEAEQAGYIGQNILGSGYALELYLHTSIGRYIRGEETAHLEALEGKRAIPRSKP 197

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P+ A  GL+G PT VNNVE++  V  I+  G+ W+         GTK++ +SG V  P T
Sbjct: 198 PYSAVSGLFGKPTIVNNVETLCCVSHIVNNGSEWFKNLSLNGVGGTKIYGVSGRVKNPGT 257

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  +  +  E+I +H GG++ G+  L  ++PGG+S   L    +    MDY  +++ GS
Sbjct: 258 WELPLGTSMREIIFEHAGGMKEGF-RLKGILPGGASTDFLTEEHL-DVNMDYSSVEKAGS 315

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT  +I++D  T  +  +  L  F+  ESCG CTPCREG  W+ +++  + +G  +  
Sbjct: 316 RLGTGTLIILDDKTCPVGMVHNLEHFFAQESCGWCTPCREGLPWVEKILLSIEEGKGKLE 375

Query: 374 EIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ++D+L   + N+  GRT CAL   A  P+Q  IK FR      I++  +C ++
Sbjct: 376 DLDILSFHAVNLGPGRTFCALAPGAVEPLQSSIKYFREDYVRHINE-KKCPWR 427


>gi|254469752|ref|ZP_05083157.1| Fe-hydrogenase, subunit beta [Pseudovibrio sp. JE062]
 gi|211961587|gb|EEA96782.1| Fe-hydrogenase, subunit beta [Pseudovibrio sp. JE062]
          Length = 518

 Score =  449 bits (1154), Expect = e-124,   Method: Composition-based stats.
 Identities = 154/414 (37%), Positives = 222/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+  +  G+    SL    +   +  + + L      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKRQTRLTFSRCGITDPLSLEHYEAHHGFLGLKRALAMTPAEIVQEVTDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW+ + KV  D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA 
Sbjct: 158 FPTGIKWNTVLKVQGD-QKYIVCNADEGDSGTFSDRMIMEGDPFVLIEGMAIAGIAVGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      L  A+     +G+LG +     +  D+ V  GAGAY+CGEET+L
Sbjct: 217 KGYIYTRSEYPHAIAILHDAIQIARKAGILGPSVMGSEHAFDMEVREGAGAYVCGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA  GL+G PT VNNV S+A VP I+ RGA +Y  +G   + G
Sbjct: 277 LNSLEGKRGIVRAKPPLPAIEGLFGKPTVVNNVMSLASVPIIMDRGARFYRDYGVGYSHG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++      E +  +T +ELI    GG       + AV  GG      P   +
Sbjct: 337 TIPIQLTGNIKNSGLFETAFGLTLNELIYDIGGGT-LSGRPVKAVQVGGPLGAYFPPS-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              I DY+   E    +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTIFDYEAFVERNGMIGHAGIVVFDDTVDMLKQARFAMEFCAIESCGKCTPCRIGSVRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + V++R+ KG   +++I+LL ++   ++  ++CALG  A +P+   + +F    
Sbjct: 455 VEVLDRIAKGDQPEQQIELLTDLCDTMKMGSLCALGGFAPYPVMSSLTHFPQDF 508


>gi|268317708|ref|YP_003291427.1| NADH-quinone oxidoreductase, F subunit [Rhodothermus marinus DSM
           4252]
 gi|262335242|gb|ACY49039.1| NADH-quinone oxidoreductase, F subunit [Rhodothermus marinus DSM
           4252]
          Length = 443

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 195/405 (48%), Positives = 262/405 (64%), Gaps = 6/405 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILE---KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
                L    + G +  + ++L         +I EVK S LRGRGGAGF TG+KWSFMP 
Sbjct: 25  RDLHRLEVYEAHGGYQTLREVLTSDRWDPKSVIEEVKKSKLRGRGGAGFPTGLKWSFMP- 83

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
              DRP +L  N DESEPGT KDR +M   PH + EG +IA +A+     ++YVRGEF R
Sbjct: 84  PVDDRPRFLCCNGDESEPGTFKDRQLMEFNPHQIFEGILIACYAMSVRTCYLYVRGEFAR 143

Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
             E ++  +++ YA G +G N     +  DI++H GAGAYICGEE++L+ES+EGK+  PR
Sbjct: 144 WIEHMERELEKLYAKGYVGKNIMGTDFSADIVIHKGAGAYICGEESSLMESVEGKRAYPR 203

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
           +KPPFPA  GL+G PTT+NNVE++A VP ILR G  W++  G  N+ G  L+ ISGHVN 
Sbjct: 204 IKPPFPAQRGLWGYPTTINNVETLANVPLILRNGGEWFASIGAPNHPGPVLYGISGHVNR 263

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E    +   +LI +  GGIRGG   L AVIPGGSS P L A  + G  MD + L+E
Sbjct: 264 PGVYEYPTGMLITDLIYEVAGGIRGG-KKLKAVIPGGSSTPPLRADMIDGVTMDAESLRE 322

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS +GTA ++V+D  TD++  + R++ FY HESCGQCTPCREGTGW+  ++ R+ +G  
Sbjct: 323 AGSMMGTAGLLVLDEDTDMVSWLRRVAHFYAHESCGQCTPCREGTGWLENILTRIDEGEG 382

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           + R++DLL ++   +EGRT+CAL DAAAWP++  I  FR   E R
Sbjct: 383 RLRDLDLLLDLCDQMEGRTVCALADAAAWPVRYTILRFREEFEAR 427


>gi|308271653|emb|CBX28261.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
           Desulfobacterium sp.]
          Length = 633

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 152/426 (35%), Positives = 229/426 (53%), Gaps = 8/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
             + Q +I   N   +   S+ + +++  +      L       II  VK SGLRGRGG 
Sbjct: 148 FYSQQTKIAIRNCGYIDPDSIEEYIAKRGYYAFVNALTNTKPSDIIKTVKESGLRGRGGG 207

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    K       +++ NADE +PG   DR I+  +PH+++EG +IA+ AIG+
Sbjct: 208 GFPTGIKWETCAKHHG--NRHIICNADEGDPGAYMDRSILEGDPHSVLEGMLIAALAIGS 265

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              F YVR E+      L  A+ +  A GLLG N    G+  ++ +  GAGA++CGE TA
Sbjct: 266 SSGFFYVRNEYPLAVSRLITAIKQAEAYGLLGGNIAGTGFSFNVKISRGAGAFVCGESTA 325

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG  G+PR K       G    P+ +NNVE+ A +P I+ +GA W+SG G E+++
Sbjct: 326 LMSSLEGLVGRPRAKYVHTVEKGFRDSPSNLNNVETYANIPPIVLKGAPWFSGMGTEHSK 385

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G +     VE  M I   +++    GG+        AV  GG S  C+P   
Sbjct: 386 GTKVFSLVGKIKNTGLVEVPMGINLKDIVFSIGGGVP-KKKKFKAVQTGGPSGGCIP-EN 443

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY  L E+GS +G+  +IVMD+ T ++        F K ESCGQC PCREG   
Sbjct: 444 LIDLPVDYQKLAEVGSIMGSGGMIVMDQDTCMVDVARYFLDFLKEESCGQCNPCREGIKQ 503

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++  + +G  +  +I+LL E+   I+  ++C LG +A  P+   I  FR   E  I 
Sbjct: 504 MLDILTDICQGNGKDGDIELLEELGSMIQKFSLCGLGTSAPNPVLTTILYFRDEYEAHI- 562

Query: 418 QYHRCN 423
           ++ +C 
Sbjct: 563 KHKKCP 568


>gi|289625430|ref|ZP_06458384.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649287|ref|ZP_06480630.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487552|ref|ZP_07005594.1| NADH-ubiquinone oxidoreductase chain F [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157936|gb|EFH99014.1| NADH-ubiquinone oxidoreductase chain F [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866834|gb|EGH01543.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 452

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 164/406 (40%), Positives = 231/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQAKDGYAAARKALTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|71734155|ref|YP_275283.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554708|gb|AAZ33919.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323792|gb|EFW79876.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327931|gb|EFW83936.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 452

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 164/406 (40%), Positives = 231/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQAKDGYAAARKALTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|26990817|ref|NP_746242.1| NADH dehydrogenase I subunit F [Pseudomonas putida KT2440]
 gi|148546980|ref|YP_001267082.1| NADH dehydrogenase subunit I F [Pseudomonas putida F1]
 gi|24985823|gb|AAN69706.1|AE016606_9 NADH dehydrogenase I, F subunit [Pseudomonas putida KT2440]
 gi|148511038|gb|ABQ77898.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas putida F1]
          Length = 453

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/406 (40%), Positives = 233/406 (57%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L++  S+  +    K L     D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLAEYESKNGYAAARKALAQMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M  +PH L+EG +I++ A+ A+  +I++RGE+    +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L  G  +
Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALENGQGR 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  GRT CA    A  P+   IK FR   E  +
Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433


>gi|87303135|ref|ZP_01085933.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Synechococcus sp. WH 5701]
 gi|87282302|gb|EAQ74262.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Synechococcus sp. WH 5701]
          Length = 528

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 146/420 (34%), Positives = 243/420 (57%), Gaps = 6/420 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI     G +    L  +++ G +  ++++L     + ++ E++ SGLRGRGGA
Sbjct: 110 FFQRQRRIVLEHCGLIDPTDLEQAIAVGAYGQLERVLRGWSPEQVVTELQRSGLRGRGGA 169

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + ++       +V NADE +PG   DR ++  +PH ++EG  IA++A+GA
Sbjct: 170 GYPTGLKWATVARMP-GARKVVVCNADEGDPGAFMDRAVLEGDPHRVLEGMAIAAYAVGA 228

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              FIY+R E+    E L+ A+++    G LG+     G+   + +  GAGAY+CGEETA
Sbjct: 229 DHGFIYIRAEYELAIERLRLAIEQAVVRGRLGAALFGTGFGFTLELRVGAGAYVCGEETA 288

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G PR +PP+PA  G+ G PT +NNVE+ A V  ILR GA W++  G   + 
Sbjct: 289 LIASIEGKRGTPRPRPPYPAERGVGGRPTLINNVETFANVAPILREGADWFAAIGTAGSS 348

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++GHV     VE  M  +   ++ +   G   G   + AV  GG S  C+PA +
Sbjct: 349 GTKVFSLTGHVRRGGLVEVPMGTSLATVVLEMGEGSPQG-SAVKAVQTGGPSGGCVPADR 407

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+ L+ +G+ +G+  ++V+D+ TD++        F + ESCG+C PCR GT  
Sbjct: 408 L-DTPLDYESLQALGTIMGSGGMVVLDQGTDMVALAAYFMAFCREESCGKCVPCRAGTVQ 466

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++E+++ G A + ++D L  +   +   ++C LG +A  P+   ++ FR     R++
Sbjct: 467 LHGLLEKILAGQASQADLDQLETLGAMVMDTSLCGLGQSAPKPMLSTLRYFRGDYLARLE 526


>gi|330830049|ref|YP_004393001.1| NADH dehydrogenase I subunit F [Aeromonas veronii B565]
 gi|328805185|gb|AEB50384.1| NADH dehydrogenase I, F subunit [Aeromonas veronii B565]
          Length = 461

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/407 (40%), Positives = 235/407 (57%), Gaps = 7/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  ++   K L +   D I++ VK +GL+GRGGAGF TG+KW  MPK  S
Sbjct: 36  QPVWLEEYQAKQGYEAARKALGQMSPDEIVSTVKDAGLKGRGGAGFPTGVKWGLMPKDES 95

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH LIEG +I++ A+ A+  +I++RGE++    
Sbjct: 96  MNIRYLLCNADEMEPNTWKDRLLMEQLPHLLIEGMIISARALKAYRGYIFLRGEYVDAAI 155

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ AV+E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 156 HLRRAVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 215

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA  G++G PT VNNVE++  VP I+  G +WY G     +   GTKL   SG VN P
Sbjct: 216 PFPAVSGVWGKPTCVNNVETLCNVPAIIGNGVAWYHGLALPGSEDHGTKLMGFSGKVNNP 275

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  EL E + GG++ G+  L A  PGG+    L    +  A M   G+ ++
Sbjct: 276 GVWELPFGITARELFENYAGGMKSGY-RLKAWQPGGAGTGFLLPEHL-DAQMYTAGIGKV 333

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S  ++  +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 334 GTRMGTGLAMAVDDSISMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQ 393

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++  L ++   +  G+T CA    A  P+   IK FR   E  I 
Sbjct: 394 SGDLATLEQLCGFLGPGKTFCAHAPGAVEPLASAIKYFRSEFEAGIK 440


>gi|325277474|ref|ZP_08143079.1| NADH dehydrogenase I subunit F [Pseudomonas sp. TJI-51]
 gi|324097390|gb|EGB95631.1| NADH dehydrogenase I subunit F [Pseudomonas sp. TJI-51]
          Length = 453

 Score =  448 bits (1153), Expect = e-124,   Method: Composition-based stats.
 Identities = 165/406 (40%), Positives = 233/406 (57%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L++  S+  +    K L     D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLAEYESKNGYAAARKALADMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M  +PH L+EG +I++ A+ A+  +I++RGE+    +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L  G  +
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALENGQGR 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  GRT CA    A  P+   IK FR   E  +
Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433


>gi|295131455|ref|YP_003582118.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           SK137]
 gi|291376367|gb|ADE00222.1| NADH oxidoreductase (quinone), F subunit [Propionibacterium acnes
           SK137]
 gi|313773335|gb|EFS39301.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL074PA1]
 gi|313810762|gb|EFS48476.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL083PA1]
 gi|313831073|gb|EFS68787.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL007PA1]
 gi|313833203|gb|EFS70917.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL056PA1]
 gi|314973943|gb|EFT18039.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL053PA1]
 gi|314976871|gb|EFT20966.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL045PA1]
 gi|314984993|gb|EFT29085.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL005PA1]
 gi|315097694|gb|EFT69670.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL038PA1]
 gi|327330838|gb|EGE72583.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL096PA2]
 gi|327442869|gb|EGE89523.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL043PA2]
 gi|327445261|gb|EGE91915.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL043PA1]
 gi|328761550|gb|EGF75068.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL099PA1]
          Length = 444

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 190/399 (47%), Positives = 258/399 (64%), Gaps = 5/399 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
              L +   +G +  + K L    D +++ VK + LRGRGGAGF TGMKWSF+PK  +  
Sbjct: 18  SWKLLNYERQGGYTGLRKALTMPPDDVVSLVKDANLRGRGGAGFPTGMKWSFVPKD-NPN 76

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVN DESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+RGE +     +
Sbjct: 77  PTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKMAFIYIRGEVLHVVRRV 136

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           Q AV E Y++G +G N    GYD+D++VH GAGAYICGEETALL+SLEG++GQPRL+PPF
Sbjct: 137 QQAVREAYSAGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPF 196

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT +NNVESI+ VP+ILR    W+   G E + G  ++S+SGH+ +P   E
Sbjct: 197 PAVAGLYASPTVINNVESISTVPSILRNSKEWFKSMGTEKSDGFTIYSLSGHLAHPGQYE 256

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  +L+    GG+R G + L    PGGSS P L    +    +DY+G+    + L
Sbjct: 257 APMGTTLRQLL-DISGGMRQGHE-LKFFTPGGSSTPILTKDDI-DLPLDYEGMAGAKTML 313

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+   D +T +++   R   FYKHESCG+CTPCREGT W+++++ R+  G  Q+ ++
Sbjct: 314 GTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRIEAGEGQEGDV 373

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           D L +++ NI GR+ CAL D A   ++G I +FR   E 
Sbjct: 374 DKLMDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412


>gi|302336898|ref|YP_003802104.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
 gi|301634083|gb|ADK79510.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
          Length = 632

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 146/428 (34%), Positives = 230/428 (53%), Gaps = 11/428 (2%)

Query: 4   DQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGAGFS 61
            Q R +  +   +  +++ + +  G +    +       + +      SGLRGRGG GF 
Sbjct: 140 RQSRSVLASCGLIDPENIREYIYGGGYRAAMEAYTAHTPEELCTIFTDSGLRGRGGGGFP 199

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G KW+   +  +D   YL+ N DE +PG   DR I+   PH+++EG +IA+ AIGA   
Sbjct: 200 SGKKWALTLRQQAD-KKYLICNGDEGDPGAFMDRSILEGNPHSVVEGMMIAARAIGAEAG 258

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           ++YVR E+    E ++ A+D     GLLG +    G   DI V  GAGA++CGE +A++ 
Sbjct: 259 YVYVRAEYPLAVERIRKAIDAARELGLLGEDLFGTGACFDIKVMEGAGAFVCGEASAMVA 318

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+ G +G PR KPP  A  GL+  PT VNNVE++A VP +LR+G+  Y   G   + GTK
Sbjct: 319 SIMGGRGMPRPKPPRTAEKGLWDKPTVVNNVETLATVPLVLRKGSKGYRTVGTSGSPGTK 378

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW-----DNLLAVIPGGSSVPCLPA 295
            F+++GHV     +E     T  E+I +  GG+         D   AV  GG S  CL  
Sbjct: 379 TFALTGHVANTGLIEVPFGTTLREIIFEIGGGVLDEKGNVDNDAFKAVQIGGPSGGCLTR 438

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +    +D+D L  +G+ +G+  ++VM+RST +++       F + ESCG+C PCREGT
Sbjct: 439 EHL-DIPLDFDSLGGIGAMVGSGGLVVMNRSTCMVQVARFFMQFTQAESCGKCVPCREGT 497

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             M+ +++ +++G A +  I LL  + + +   ++C LG AA  P+   ++ FR   E  
Sbjct: 498 RQMLDLLDDIIEGRADESTIPLLESLCRTVARGSLCGLGKAAPSPVLSTLRYFRQEYESH 557

Query: 416 IDQYHRCN 423
           +    RC 
Sbjct: 558 VVD-KRCP 564


>gi|260223138|emb|CBA33401.1| NADH-quinone oxidoreductase subunit F [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 619

 Score =  448 bits (1152), Expect = e-124,   Method: Composition-based stats.
 Identities = 209/398 (52%), Positives = 263/398 (66%), Gaps = 11/398 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I+  L G    SL D ++RG +  + KIL K       +D +I  VK SGLRGRGGAGF 
Sbjct: 122 IYAGLNGSN-WSLQDYVARGGYQALRKILGKDGGEGLTQDQVIATVKESGLRGRGGAGFP 180

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       YLV N+DE EPGTCKDRDI++  PH +IEG  IA++A+G    
Sbjct: 181 TGLKWSFMPRQFPG-QKYLVCNSDEGEPGTCKDRDILQFNPHIVIEGMAIAAYAMGITVG 239

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE     +  +AA++E  A+G LG N     +   +   HG GAYICGEETALLE
Sbjct: 240 YNYIHGEIFASYDRFEAALEEARAAGFLGDNILGSNFSFQLHAAHGFGAYICGEETALLE 299

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK
Sbjct: 300 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGQAYLECGKPNNGGTK 359

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           ++S+SG V  P   E  M   F +L+E   G    G  NL AVIPGGSS P LPA  +  
Sbjct: 360 IYSVSGDVERPGNYEIPMGTPFSKLLELAGG--VRGGRNLKAVIPGGSSSPVLPASIIME 417

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD +  ++KA+ RLS FY HESCGQCTPCREGTGW+ R
Sbjct: 418 CTMDYDSIAKAGSMLGSGAVIVMDETRCMVKALQRLSYFYMHESCGQCTPCREGTGWLSR 477

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           +++R+  G  +  ++DLL  V++NI+GRTICALGDAAA
Sbjct: 478 MVDRIEGGQGRPSDMDLLDNVAENIQGRTICALGDAAA 515


>gi|313498027|gb|ADR59393.1| NADH-quinone oxidoreductase subunit F [Pseudomonas putida BIRD-1]
          Length = 458

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/406 (40%), Positives = 234/406 (57%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L++  S+  +    K L     D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLAEYESKNGYAAARKALAQMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M  +PH L+EG +I++ A+ A+  +I++RGE+    +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L +G  +
Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALERGQGR 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  GRT CA    A  P+   IK FR   E  +
Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433


>gi|294810790|ref|ZP_06769436.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b]
 gi|294441978|gb|EFG10799.1| putative protein HymB [Bacteroides xylanisolvens SD CC 1b]
          Length = 577

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 146/404 (36%), Positives = 229/404 (56%), Gaps = 6/404 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  +   +L K    +I+ +K SGLRGRGG 
Sbjct: 149 FYRKQLRIALRNCGFIDPENIEEYIAREGYFALADCLLNKQPTDVIDIIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW F  K  SD   Y+V NADE +PG   DR IM  +PH+++E   +  ++IG+
Sbjct: 209 GFPTGLKWEFANKQQSD-VKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMCVCGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+      L+ A+++    GLLG +     +  DI + +GAGA++CGEETA
Sbjct: 268 TKGLVYIRAEYPLAINRLKTAINQAREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNNVE++A +P IL +GA W++  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNVETLANIPIILTKGADWFATIGTERSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLSAGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
           ++ ++ ++ +G   ++++D L  + + I+   +C LG  +  P+
Sbjct: 506 LLELLNKITEGKGTEKDLDTLATLGQVIKDTALCGLGQTSPNPV 549


>gi|150026258|ref|YP_001297084.1| NADH dehydrogenase I, F subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772799|emb|CAL44283.1| NADH dehydrogenase I, F subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 455

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 194/411 (47%), Positives = 260/411 (63%), Gaps = 16/411 (3%)

Query: 21  SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
                 G + +V+K L+    D ++ EVK SG+RGRGGAGF  GMKWSF+ K  S +P +
Sbjct: 19  EVYRKEGGYASVEKALKTLTPDEVVEEVKTSGIRGRGGAGFPAGMKWSFIDK-KSGKPRH 77

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           LV NADESEPGT KDR +M   PH LIEG + +S+A+GA+ ++IY+RGE++   + L+ A
Sbjct: 78  LVCNADESEPGTFKDRYLMEFIPHLLIEGMITSSYALGANLSYIYIRGEYMWVYKILERA 137

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           + E  A+G LG N    GYD+D+ V  G GAYICGEETAL+ESLEGK+G PR+KPPFPA 
Sbjct: 138 IAEAKAAGWLGKNILGTGYDLDLYVQIGGGAYICGEETALIESLEGKRGNPRIKPPFPAV 197

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT VNNVE+I+ VP I+    + Y+  G   + GTKL S SG++  P   E  M
Sbjct: 198 SGLWGNPTVVNNVETISAVPWIVNNSGAKYAEIGIGRSTGTKLISASGNIKKPGVYEIEM 257

Query: 259 SITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM------RGAIMDYDGLK- 309
            ++  E +  +++ GG+      L A++PGGSSVP LPA  +         +M Y+ L  
Sbjct: 258 GLSVYEFMNSDEYLGGMATNRP-LKALVPGGSSVPILPAHLIYKTANNEDRLMSYESLSD 316

Query: 310 ---EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
                GS LG+   IV D    I++  W  S FY HESCGQCTPCREGTGWM +++ R+ 
Sbjct: 317 GGFPTGSMLGSGGFIVYDDRACIVRNTWNFSRFYHHESCGQCTPCREGTGWMEKILHRIE 376

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            G  ++ +IDLL  +   IEG TIC LGDAAAWP+   I++FR   E  + 
Sbjct: 377 NGHGREEDIDLLLSIQSKIEGNTICPLGDAAAWPVAAAIRHFREEFEYHVR 427


>gi|114328597|ref|YP_745754.1| NAD-dependent formate dehydrogenase beta subunit (fdsB)
           [Granulibacter bethesdensis CGDNIH1]
 gi|114316771|gb|ABI62831.1| NAD-dependent formate dehydrogenase beta subunit (fdsB)
           [Granulibacter bethesdensis CGDNIH1]
          Length = 518

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
              Q R+     G+   +SLSD  + G +  + + L    + ++ +V  SGLRGRGGAGF
Sbjct: 99  FKKQTRLTFERCGIVDPRSLSDYQAHGGYKGLARALTMTPEAVVEDVTKSGLRGRGGAGF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +    Y+V NADE + GT  DR IM  +P  LIEG  IA +A+GA  
Sbjct: 159 PTGIKWKTVLGAKA-AQKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMTIAGYAVGATK 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y R E+    +++  A+     +G+LG N    G   D+ V  GAGAY+CGEETALL
Sbjct: 218 GYVYTRSEYPHAIDAMNRAIIAAREAGMLGDNILGSGISFDMEVRQGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEGK+G  R KPP PA  GL+G PT +NNV S+  VP I+  G   Y+ FG   +RGT
Sbjct: 278 DSLEGKRGVVRAKPPLPALSGLFGQPTVINNVISLTSVPWIMTHGGEAYAAFGLGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V      E +  IT  EL+++  GG       + AV  GG      P   + 
Sbjct: 338 MPIQIAGNVKQGGLFEIAFGITLGELVDEIGGGT-LTGRPVRAVQIGGPLGAYFPRA-LF 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   +++ D + D+         F   ESCG+CTPCR G+   +
Sbjct: 396 DTPFDYEAFAAKDGLIGHGGIVIFDDTVDMAHMARFAMEFCAEESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +++L++G   ++   +L ++   ++  ++CALG    +P+   + +F    
Sbjct: 456 ETLDKLLRGEQHEKNYAVLEDLCNTMKFGSLCALGGFTPYPVVSAMTHFPEDF 508


>gi|313836205|gb|EFS73919.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA2]
 gi|314927640|gb|EFS91471.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL044PA1]
 gi|314971361|gb|EFT15459.1| NADH oxidoreductase, F subunit [Propionibacterium acnes HL037PA3]
 gi|328906298|gb|EGG26073.1| NADH dehydrogenase I chain F [Propionibacterium sp. P08]
          Length = 444

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/409 (47%), Positives = 263/409 (64%), Gaps = 6/409 (1%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I +  +G +    L +   +G +  +   L    D +++ V+ + LRGRGGAGF TGMKW
Sbjct: 8   ILSANWGDERSWKLLNYERQGGYTGLRHALTMQPDEVVSLVRDANLRGRGGAGFPTGMKW 67

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+PK  +  P YLVVN DESEPGTCKD  +M   PHTL+EG +IAS+AI A  AFIY+R
Sbjct: 68  SFVPKD-NPNPTYLVVNGDESEPGTCKDMPLMMASPHTLVEGVIIASYAIKAKVAFIYIR 126

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE +     +Q AV E Y++G +G N    GYD+D++VH GAGAYICGEETALL+SLEG+
Sbjct: 127 GEVLHVIRRVQQAVREAYSAGYIGKNILGSGYDLDVVVHAGAGAYICGEETALLDSLEGR 186

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +GQPRL+PPFPA  GLY  PT +NNVESI+ VP ILR G  W+   G E + G  ++S+S
Sbjct: 187 RGQPRLRPPFPAVAGLYASPTVINNVESISTVPAILRNGKEWFKSMGTEKSDGFTIYSLS 246

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV +P   E  M IT  +L+    GG+R G + L    PGGSS P L    +    +DY
Sbjct: 247 GHVAHPGQYEAPMGITLRQLL-GISGGMRQGHE-LKFFTPGGSSTPILAKDDL-DLPLDY 303

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G+    + LGT A+   D +T +++   R   FYKHESCG+CTPCREGT W+++++ R+
Sbjct: 304 EGMAGAKTMLGTKALQCFDETTSVVRVTLRWLEFYKHESCGKCTPCREGTWWVVQMLRRI 363

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
             G  Q+ ++D L +++ NI GR+ CAL D A   ++G I +FR   E 
Sbjct: 364 EAGEGQEGDVDKLLDIADNIGGRSFCALADGAVGCLRGAIGHFRDEFEA 412


>gi|296388898|ref|ZP_06878373.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PAb1]
 gi|313107679|ref|ZP_07793861.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa 39016]
 gi|310880363|gb|EFQ38957.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa 39016]
          Length = 448

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/409 (40%), Positives = 235/409 (57%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  QPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++    
Sbjct: 90  LNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAAR 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    R  +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    ++  EL E + GG+R G+  L A  PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVSARELFEDYAGGMRDGF-QLKAWQPGGAGTGFLLPEHL-DAQMFAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +++ L ++   +  G+T CA    A  P+   +K FR   E  I + 
Sbjct: 388 PGDLETLEQLVNFLGPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQ 436


>gi|281357444|ref|ZP_06243932.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281316047|gb|EFB00073.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 573

 Score =  447 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 149/421 (35%), Positives = 233/421 (55%), Gaps = 12/421 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           ++      +   S  D ++   +  ++K L      +++EVK SGLRGRGG GF TG KW
Sbjct: 100 KVLALAGRIDPTSFEDYVAHDGYKGLEKALAMTSQQVVDEVKLSGLRGRGGGGFPTGNKW 159

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F+    +D    L+ NADE +PG   DR +M   PH ++EG +IA++A GA   FIY R
Sbjct: 160 GFLAAKQAD-EKILICNADEGDPGAFMDRSLMESAPHQVLEGMLIAAYATGATKLFIYCR 218

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
            E+    + L+ A+ + Y   L   N   G +++II+  GAGA++CGEETAL+ SLEG++
Sbjct: 219 AEYPMAIKHLKIAIAQIYEHKL---NVVNGRELEIIIKEGAGAFVCGEETALIASLEGQR 275

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PR +PPFP + G  G P+ +NNVE+   VP ILR GA+ ++  G E ++GTKLF+++G
Sbjct: 276 GTPRFRPPFPTDKGWMGHPSMINNVETFGNVPLILREGAAAFASVGTEGSKGTKLFALAG 335

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            + +P  VE  M  T  E++    G      + + AV  GG S  C+P   +    +DYD
Sbjct: 336 DLKHPGLVEVPMGTTLREIVFDIGG---ADPEKVKAVQTGGPSGGCIPVE-LFDTPVDYD 391

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L+++G+ +G+  +IV+ +   +++       F   ESCG+CT CR GT  M   +ER+V
Sbjct: 392 SLRKLGAIMGSGGMIVIGKDRCMVETARYFLDFTHRESCGKCTFCRVGTTRMYETLERIV 451

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH----RC 422
            G     ++ LL ++   I   ++C LG  A  P+   ++ +R   E  +        +C
Sbjct: 452 AGKGSMEDLALLEDLGPKIRMGSLCGLGQTAPNPVLATLRYYRHEYEAHVRDRQCDALQC 511

Query: 423 N 423
           N
Sbjct: 512 N 512


>gi|301063630|ref|ZP_07204144.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300442278|gb|EFK06529.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 633

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 154/426 (36%), Positives = 231/426 (54%), Gaps = 8/426 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
               Q +I   N   +  + + + M+RG +      L++     II  +K SGLRGRGG 
Sbjct: 148 FYDRQVKIALRNCGYIDPEKIEEYMARGGYKAFLSALKRNAPQEIIAAIKESGLRGRGGG 207

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW        +   Y++ NADE +PG   DR I+  +PHT+IEG +IA  AIG+
Sbjct: 208 GFPTGVKWESCAAHQGE--RYIICNADEGDPGAYMDRSILEGDPHTIIEGMLIAGLAIGS 265

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+    + L  A+ +    GLLG +     +  ++ +  GAGA++CGE TA
Sbjct: 266 REGFIYVRNEYPLAVKRLVTAIRQATEYGLLGQHIAGSDFSFEMKISTGAGAFVCGESTA 325

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ SLEG+ G+PR K       G    P+ +NNVE+ A VP IL +GA W++  G ++++
Sbjct: 326 LMASLEGEVGRPRAKYVHTVEKGFRQGPSNLNNVETYANVPVILAKGARWFANLGTDHSK 385

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS+ G +     VE  M  +   +I    GGI  G     AV  GG S  C+P   
Sbjct: 386 GTKVFSLVGKIKNTGLVEVPMGTSLRNIIFDIGGGIP-GKKAFKAVQTGGPSGGCIPEAY 444

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D++ L ++GS +G+  +IVMD+ T ++        F K ESCGQC PCREG   
Sbjct: 445 L-DLGVDFNELAKVGSIMGSGGMIVMDQDTCMVDVARYFLDFLKEESCGQCNPCREGIKR 503

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++ R+ +G  ++ +IDLL E+   +   ++C LG +A  P+   IK FR   E  I 
Sbjct: 504 MLEILTRVCEGDGREGDIDLLQELGDMVRKFSLCGLGTSAPNPVLTTIKYFREEYEAHIR 563

Query: 418 QYHRCN 423
              +C 
Sbjct: 564 D-KKCP 568


>gi|297539618|ref|YP_003675387.1| NADH dehydrogenase (quinone) [Methylotenera sp. 301]
 gi|297258965|gb|ADI30810.1| NADH dehydrogenase (quinone) [Methylotenera sp. 301]
          Length = 513

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 223/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    SL D ++   +  + K L      I+  V  SGLRGRGGA F
Sbjct: 100 LKKQQRLTFARVGITDPVSLDDYIAHDGYKGLKKALTLSGAEIVKAVTDSGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+ +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 160 PTGIKWNTVLGCQAD-QKYIVCNADEGDSGTFSDRMIMEDDPFVLIEGMTIAGVAVGATQ 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    ++L  A+ +  A+G LG       +  ++ V   AGAY+CGEET+LL
Sbjct: 219 GYIYLRSEYPHALKALNEAIAKAEAAGYLGDKICGSTHTFNLEVRRAAGAYVCGEETSLL 278

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+A VP IL +GA +Y+ +G   +RGT
Sbjct: 279 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISLATVPIILDKGAQYYADYGMGRSRGT 338

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE +  IT  EL+  + GG   G   + AV  GG     LP  Q  
Sbjct: 339 LPIQLAGNLKHGGLVELAFGITLRELLYDYGGGSATG-KPIRAVQVGGPLGAFLPESQ-F 396

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    + + +G   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 397 DTPLDYEAFSNIWAVVGHGGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGV 456

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+++++ G    + I L+ ++S  +   ++CALG    +P+   + +F    
Sbjct: 457 EVIDKIIAGKDTAKNIKLVRDLSDTMLNGSLCALGGMTPYPVLSAMNHFPEDF 509


>gi|28198176|ref|NP_778490.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xylella fastidiosa
           Temecula1]
 gi|182680810|ref|YP_001828970.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa M23]
 gi|28056246|gb|AAO28139.1| NADH-ubiquinone oxidoreductase NQO1 subunit [Xylella fastidiosa
           Temecula1]
 gi|182630920|gb|ACB91696.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa M23]
 gi|307579278|gb|ADN63247.1| NADH-quinone oxidoreductase, F subunit [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 444

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 206/418 (49%), Positives = 266/418 (63%), Gaps = 8/418 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFST 62
              I+T L+     S    +  G +  + KI E+    + +I+ VK S LRGRGGAGF T
Sbjct: 18  HQVIYTTLHYEIPWSYESYLKTGGYTALRKIFEEKIPPEQVIDMVKQSNLRGRGGAGFPT 77

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G+KWSFMPK       Y++ N+DESEPGTCKDRDI+R+ PH+++EG  IA +A G+  A+
Sbjct: 78  GLKWSFMPK--GTMQKYILCNSDESEPGTCKDRDILRYNPHSVVEGMAIACYATGSTVAY 135

Query: 123 IYVRGEFIRE-RESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
            Y+RGEF  E  E  + A+ + Y  G LG +    G D+DI    GAGAYICGEETAL+E
Sbjct: 136 NYLRGEFHHEPFEHFEQALADAYTHGWLGKSVLGSGVDIDIYAVLGAGAYICGEETALME 195

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPAN GLYG P+T+NN E+ A VP I+R G  W+    +  N G+K
Sbjct: 196 SLEGKKGQPRYKPPFPANFGLYGKPSTINNTETYAAVPAIIRNGPEWFLSLSKTKNGGSK 255

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V      E  +  TFDEL+E   G        L A IPGG S+P L A Q++G
Sbjct: 256 IFSVSGCVQQGGNFEVPLGTTFDELLEMAGG--LRPGRALKAAIPGGVSMPVLKAEQLQG 313

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD L+ +GSGLG+  ++V+D S   ++   R+S F+  ESCGQCTPCREGTGWM R
Sbjct: 314 LQMDYDTLRVLGSGLGSGGIVVLDDSVCCVRFACRISQFFHKESCGQCTPCREGTGWMHR 373

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           V+ER+V G A   ++  L  V+  IEG TICA G+AAAWPIQG ++ F    E  I  
Sbjct: 374 VLERIVAGQATMEDLHQLKVVAGQIEGHTICAFGEAAAWPIQGFLRQFWDEFEYYIVH 431


>gi|227535966|ref|ZP_03966015.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244209|gb|EEI94224.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 450

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 201/420 (47%), Positives = 261/420 (62%), Gaps = 18/420 (4%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           N+ G+   +      +G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+
Sbjct: 11  NVPGIH--TFEVYRQQGGYRAVEKALKSMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFL 68

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            K     P YLV N DESEPGT KDR +M H PH L+EG +++S+A+GA+ ++IYVRGE 
Sbjct: 69  AK-PEGVPRYLVCNGDESEPGTFKDRFLMTHIPHALVEGMIVSSYALGANTSYIYVRGEM 127

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           + +   L+ A+ E   +G LG N    GYD++I V  G GAYICGEETALLESLEGK+G 
Sbjct: 128 MPQIRILEKAIAEAKHAGFLGKNILGTGYDLEIYVQPGGGAYICGEETALLESLEGKRGN 187

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR+KPPFPA  GLYGCPT VNNVESIA    I+  G   Y+  G + + GTKL S  G+V
Sbjct: 188 PRIKPPFPAVAGLYGCPTVVNNVESIAATVPIINDGGEEYAKIGIDRSTGTKLISAGGNV 247

Query: 249 NYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI---- 302
             P   E  + +  +E I   ++CGGI      L AV+ GGSSVP LPA  +   I    
Sbjct: 248 AKPGVYEIELGLPVEEFIYSDEYCGGIA-NGKRLKAVVAGGSSVPILPANLITKTINGES 306

Query: 303 --MDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
             M Y+ L       G+ LG+   I  D    I++  W  + FY HESCGQC+PCREGTG
Sbjct: 307 RLMSYESLADGGFATGTMLGSGGFIAFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTG 366

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           WM +++ ++  G     +IDLL++V + IEG TIC LGDAAAWP+   I++FR   E  I
Sbjct: 367 WMEKILHKIEMGKGSMADIDLLWDVQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHI 426


>gi|307823547|ref|ZP_07653776.1| NADH dehydrogenase (quinone) [Methylobacter tundripaludum SV96]
 gi|307735532|gb|EFO06380.1| NADH dehydrogenase (quinone) [Methylobacter tundripaludum SV96]
          Length = 517

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
              Q R+ F  +      SL+D +    +  +   L   ++ I+  V  SGLRGRGGA F
Sbjct: 99  FKKQQRLTFARIGKTDPSSLTDYIDNDGYRGLKNALAMTQEQIVQAVTDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S    Y++ NADE + GT  DR +M  +P  LIEG  IA  A+ A  
Sbjct: 159 PTGIKWKTVLNTAS-LQKYIICNADEGDSGTFSDRMVMEGDPFVLIEGMTIAGLAVDATQ 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E L AA+   Y  G LG N    G   ++ V  GAGAY+CGEET+L+
Sbjct: 218 GYIYLRIEYPHAFEVLNAAIATAYQEGYLGENIQGSGKTFNLEVRLGAGAYVCGEETSLM 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+A +P IL +G  +Y  FG   +RGT
Sbjct: 278 ESLEGKRGLVRFKPPLPAISGLFGQPTVVNNVISLASIPVILNKGGDYYRDFGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++  P  VE    +T  EL+    GG   G   + AV  GG     LP  Q  
Sbjct: 338 LPVQLAGNIKRPGLVELGFGLTLRELLYDFGGGAASGRP-IRAVQVGGPLGAYLPESQ-F 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    + + +G   ++V D + ++ +       F K ESCG+CTPCR G+   +
Sbjct: 396 DTPLDYEAFAAIWAVVGHGGIVVFDDTVNMAEMARYSMEFCKIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            VM+ ++ G    + I LL ++   +   ++CALG    +P+   + +F    
Sbjct: 456 EVMDDIINGRNLDKNIPLLRDLCDTLLNGSLCALGGMTPYPVLSALNHFPEDF 508


>gi|171362775|dbj|BAG15851.1| probable NADH-quinone oxidoreductase [Pseudomonas putida]
          Length = 459

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/406 (40%), Positives = 234/406 (57%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L++  S+  +    K L     D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLAEYESKNGYAAARKALAQMSADDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M  +PH L+EG +I++ A+ A+  +I++RGE+    +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQQPHLLVEGMLISARALKAYRGYIFLRGEYTTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVANGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L KG  +
Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKMLRALEKGQGR 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  GRT CA    A  P+   IK FR   E  +
Sbjct: 388 AEDIETLLGLVNFLGPGRTFCAHAPGAVEPLGSAIKYFRSEFEAGV 433


>gi|15597837|ref|NP_251331.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PAO1]
 gi|107102161|ref|ZP_01366079.1| hypothetical protein PaerPA_01003211 [Pseudomonas aeruginosa PACS2]
 gi|152984500|ref|YP_001347930.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa PA7]
 gi|218891198|ref|YP_002440064.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa LESB58]
 gi|81540766|sp|Q9I0J7|NUOF_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|9948709|gb|AAG06029.1|AE004692_8 NADH dehydrogenase I chain F [Pseudomonas aeruginosa PAO1]
 gi|150959658|gb|ABR81683.1| NADH oxidoreductase (quinone), f subunit [Pseudomonas aeruginosa
           PA7]
 gi|218771423|emb|CAW27190.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa LESB58]
          Length = 448

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/409 (40%), Positives = 235/409 (57%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  QPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++    
Sbjct: 90  LNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAAR 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    R  +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    ++  EL E + GG+R G+  L A  PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVSARELFEDYAGGMRDGF-QLKAWQPGGAGTGFLLPEHL-DAQMFAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +++ L ++   +  G+T CA    A  P+   +K FR   E  I + 
Sbjct: 388 PGDLETLEQLVNFLGPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQ 436


>gi|163857997|ref|YP_001632295.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella petrii
           DSM 12804]
 gi|163261725|emb|CAP44027.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella
           petrii]
          Length = 522

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 150/414 (36%), Positives = 225/414 (54%), Gaps = 6/414 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++      + + L      I++EV ASGLRGRGGA F
Sbjct: 101 LKKQQRLTFARVGITDPLSIDDYVAHDGLQGLRRALCLTPQQIVDEVSASGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    ++   Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWKTVLTTPAE-QKYIVCNADEGDSGTYSDRLLMEGDPYVLIEGMAIAGLAVGATY 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+ +   +L  A+     +G LG +    G   D+ V  GAGAYICGEET+LL
Sbjct: 220 GYIYVRSEYPQAIATLNEAIARARQAGWLGDDIQGSGRRFDLEVRKGAGAYICGEETSLL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL RGA++Y  +G   ++GT
Sbjct: 280 ESLEGKRGVVRAKPPLPAIAGLFGKPTVINNVISLASVPIILARGAAYYRDYGVGRSQGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+    GG   G   L AV  GG     LP  Q  
Sbjct: 340 LPFQLAGNLKHGGLVEAAFGLTLRELLYDFGGGSASGRP-LRAVQVGGPLGAYLPESQ-W 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    + + +G   ++  D + D+ +       F   ESCG+CTPCR G    +
Sbjct: 398 DVPLDYEAYAAISAMVGHGGIVAFDDTVDMARMARYAMEFCAVESCGKCTPCRIGAVRGV 457

Query: 360 RVMERL-VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++++  +G   ++++ LL ++   + G ++CALG    +P+   + +F    
Sbjct: 458 ETLDKIATRGAQHEQQVHLLRDLCDTMLGGSLCALGGMTPYPVLSALNHFPEDF 511


>gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
 gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
          Length = 635

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 147/425 (34%), Positives = 231/425 (54%), Gaps = 7/425 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + +    +  +   +L    + +I E+K SGLRGRGG 
Sbjct: 149 FYRKQMRIALRNCGFIDPENIEEYIGLNGYRALADSLLNGTPEAVIEEIKRSGLRGRGGG 208

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +  +D   Y+V NADE +PG   DR IM  +PH+++E   +  ++IG+
Sbjct: 209 GFPTGRKWELASRQQAD-TKYVVCNADEGDPGAFMDRSIMEGDPHSIVEAMALCGYSIGS 267

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    + L+ A+ +    GLLG N    G+  DI + +GAGA++CGEETA
Sbjct: 268 SKGLVYIRAEYPLAIQRLKTAIAQAREYGLLGDNIFGTGFCFDIEIRYGAGAFVCGEETA 327

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+P LKPPFPA  G  G PT VNN E++A +P IL RGA W+S  G E ++
Sbjct: 328 LIHSMEGKRGEPTLKPPFPAESGYLGKPTNVNNAETLANIPIILTRGAEWFSTIGTEFSK 387

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +N    +E  M  T  E+I +  G    G     AV  GG S  CL    
Sbjct: 388 GTKVFALAGKINNVGLIEVPMGTTLREVIYEIGG-GIKGGKKFKAVQTGGPSGGCLTEKH 446

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L   GS +G+  +IVMD    ++        F   ESCG+CTPCR G   
Sbjct: 447 L-DTPIDFDNLLAEGSMMGSGGMIVMDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKR 505

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ ++ +G   ++++  L  + + I+   +C LG  +  P+   + NF     + + 
Sbjct: 506 LLEILNKITEGRGSEKDLQTLSTLGQVIKDTALCGLGQTSPNPVLSTLNNFYDEYVKHVR 565

Query: 418 QYHRC 422
           +   C
Sbjct: 566 E-KTC 569


>gi|111022877|ref|YP_705849.1| NADH dehydrogenase subunit F [Rhodococcus jostii RHA1]
 gi|110822407|gb|ABG97691.1| probable NADH dehydrogenase subunit F [Rhodococcus jostii RHA1]
          Length = 432

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 204/411 (49%), Positives = 270/411 (65%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I+ VK +GLRGRGGAGF TGMKWSF+P+  + 
Sbjct: 15  ESWTLDTYRRHDGYEGLQKALRMDPDEVISTVKEAGLRGRGGAGFPTGMKWSFIPQGDA- 73

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  +M   PH L+EG +IA++AI A  AFIYVRGE +     
Sbjct: 74  KPHYLVVNADESEPGTCKDMPLMLATPHALVEGVIIAAYAIRAGHAFIYVRGEVVPVLRR 133

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQAAV E YA+G LG+N    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 134 LQAAVAEAYAAGYLGTNILDSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 193

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVESIA VP I+  G  W+   G E + G  L+S+SGHV  P   
Sbjct: 194 FPAVAGLYASPTVVNNVESIASVPPIIVNGIEWFRSMGSEKSPGFTLYSLSGHVTKPGQY 253

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL+E + GG+R G   L    PGGSS P      +    +DY+G+   GS 
Sbjct: 254 EAPLGITLRELLE-YAGGVRAG-HRLKFWTPGGSSTPIFTDEHL-DVALDYEGVGAAGSM 310

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+++++ERL +G     +
Sbjct: 311 LGTKALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILERLERGEGTDAD 370

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ++ L +++ NI G++ CALGD AA PI   IK FR       +Q   C F 
Sbjct: 371 LEKLLDIADNILGKSFCALGDGAASPIMSSIKYFRDEYLAHFEQGG-CPFD 420


>gi|253997399|ref|YP_003049463.1| NADH dehydrogenase (quinone) [Methylotenera mobilis JLW8]
 gi|253984078|gb|ACT48936.1| NADH dehydrogenase (quinone) [Methylotenera mobilis JLW8]
          Length = 517

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 219/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +   SL D ++   +  +   L+     I+  V  SGLRGRGGA F
Sbjct: 99  LKKQQRLTFARVGVINPVSLDDYIAHDGYQGLKNALKLSGADIVKAVTDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+ +    S+   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 159 PTGIKWNTVLGCESE-QKYVVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAGVAVGATQ 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+     +L  A++    +G LG N    G    + V   AGAY+CGEET+LL
Sbjct: 218 GYIYLRSEYPHALVTLNQAIEVANKAGYLGDNLLGSGKAFHLEVRRAAGAYVCGEETSLL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+A VP IL +GA +Y+ +G   +RGT
Sbjct: 278 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISLASVPIILDKGAQYYADYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE +   T  EL+    GG       + AV  GG     LP  Q  
Sbjct: 338 LPIQLAGNLKHNGLVELAFGATLRELLYDFGGG-AASGKPIRAVQVGGPLGAYLPESQ-F 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + LG   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 396 DTPLDYEAFAKIWAVLGHGGIVAFDDTVDMSKMARYAFEFCAVESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++++  G    + I L+ ++S  +   ++CALG    +P+   + +F    
Sbjct: 456 EVIDKIRSGKDHAKNIQLVRDLSDTMLNGSLCALGGMTPYPVLSALNHFPQDF 508


>gi|189485526|ref|YP_001956467.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287485|dbj|BAG14006.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 623

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/431 (34%), Positives = 235/431 (54%), Gaps = 11/431 (2%)

Query: 1   MLTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+       +  +++ + +S G +   +K   E     I + V A+GLRGRGG 
Sbjct: 132 FYKKQHRVVIKQCGVMDPENIKEYISIGGYRAAEKACAEMTDKEICDVVLAAGLRGRGGG 191

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G KW+      +    Y++ N DE +PG   DR +M   PH +IEG VIA+ A GA
Sbjct: 192 GFPVGKKWNLARNQTA-SKKYIICNGDEGDPGAFMDRSVMEGNPHGIIEGLVIAAKATGA 250

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + ++ AV +     +LG N    G++  + V  GAGA++CGEE A
Sbjct: 251 DEGYVYVRTEYALAVKRMKKAVKDASDIKVLGKNIFGSGHNFTLHVMEGAGAFVCGEEIA 310

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G P  KPPFPA  GL+G PTT+NNVE++A +P I+  GA  +   G  ++ 
Sbjct: 311 LIASVEGKRGMPLPKPPFPAQSGLWGKPTTINNVETLATIPMIINYGADVFRETGTVSSP 370

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD-----NLLAVIPGGSSVPC 292
           GTK F+++GHV     +E  +  T  ++I    GG+  G       N  AV  GG S  C
Sbjct: 371 GTKTFALTGHVLNTGLIEVPLGSTLRQIIFDISGGVTDGKGSVKDGNFKAVQIGGPSGGC 430

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           L    +    +D+D LK++G+ +G+  ++VM++S  ++        F ++ESCG+C  CR
Sbjct: 431 LTEEHL-DLSLDFDSLKKVGAMVGSGGLVVMNKSICMVNIAKFFMQFTQNESCGKCVLCR 489

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           EGT  M+ ++  + +G A +  I LL E+++ ++  ++C LG  A  P+   +K FR   
Sbjct: 490 EGTKQMLLMLSDITEGKADEDTISLLEELARAVQIGSLCGLGKTAPNPVLSTLKYFRNEY 549

Query: 413 EERIDQYHRCN 423
           +  + +  RC 
Sbjct: 550 DAHVKE-KRCP 559


>gi|257485443|ref|ZP_05639484.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330987946|gb|EGH86049.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 452

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQAKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++    
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAR 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|320160244|ref|YP_004173468.1| NADH-quinone oxidoreductase subunit F [Anaerolinea thermophila
           UNI-1]
 gi|319994097|dbj|BAJ62868.1| NADH-quinone oxidoreductase chain F [Anaerolinea thermophila UNI-1]
          Length = 426

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 189/403 (46%), Positives = 255/403 (63%), Gaps = 5/403 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L   +  G ++   K++       ++NEVK SGLRGRGGAGF TG+KWSF+P      PH
Sbjct: 18  LDVYLKHGGFEAAKKVITQMQPADVVNEVKTSGLRGRGGAGFPTGVKWSFLPNNI--WPH 75

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADESEPGT KDR+I+   P  L+EG +IAS+A+ A+ A+IY+RGEF +    L  
Sbjct: 76  YVVCNADESEPGTFKDREILESNPFQLLEGLMIASYAVQANRAYIYLRGEFWQIARKLDE 135

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            + E   +GLLG +     Y + I  H GAGAYICGEETALLESLEGK GQPRL+PPFPA
Sbjct: 136 KIAELEKAGLLGDHLFGTNYSLRIYTHLGAGAYICGEETALLESLEGKIGQPRLRPPFPA 195

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLYG PT +NNVE++  +P IL +GA WY  FG E + G K+FS+SG+VN P   E  
Sbjct: 196 VYGLYGKPTVINNVETLTNLPPILEKGAQWYRSFGTEKSPGVKIFSLSGNVNRPGNYELP 255

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG 316
           +  TF ELI  H GGI  G      +  G SS    +    +    MDY+ +  +GS LG
Sbjct: 256 LGTTFRELIYTHGGGIPEGRKVKAILPAGASSAIIAVNDDAILDTPMDYESVAAIGSQLG 315

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +A+VIV D + ++   + +   F+KHESCG+CTPCREGT WM R+ +R++ G A + ++D
Sbjct: 316 SASVIVADETVNMAWLVSKTVNFFKHESCGKCTPCREGTFWMNRITQRMMAGRAVESDVD 375

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           LL  V+  I G+ +CALG+ +   +Q  I+ FR    E++ Q 
Sbjct: 376 LLANVANQIAGKCLCALGEFSVMAVQTGIRQFRTDFLEQVKQQ 418


>gi|300771672|ref|ZP_07081547.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761661|gb|EFK58482.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 450

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 201/420 (47%), Positives = 261/420 (62%), Gaps = 18/420 (4%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
           N+ G+   +      +G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+
Sbjct: 11  NVPGIH--TFEVYRQQGGYRAVEKALKSMSPDDVVEEVKKSGLRGRGGAGFPTGMKWSFL 68

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            K     P YLV N DESEPGT KDR +M H PH L+EG +++S+A+GA+ ++IYVRGE 
Sbjct: 69  AK-PEGVPRYLVCNGDESEPGTFKDRFLMTHIPHALVEGMIVSSYALGANTSYIYVRGEM 127

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           + +   L+ A+ E   +G LG N    GYD++I V  G GAYICGEETALLESLEGK+G 
Sbjct: 128 MPQIRILEKAIAEAKHAGFLGKNILGTGYDLEIYVQPGGGAYICGEETALLESLEGKRGN 187

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR+KPPFPA  GLYGCPT VNNVESIA    I+  G   Y+  G + + GTKL S  G+V
Sbjct: 188 PRIKPPFPAVAGLYGCPTVVNNVESIAATVPIINDGGEEYAKIGIDRSTGTKLISAGGNV 247

Query: 249 NYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI---- 302
             P   E  + +  +E I   ++CGGI      L AV+ GGSSVP LPA  +   I    
Sbjct: 248 AKPGVYEIELGLPVEEFIYSDEYCGGIA-NGKRLKAVVAGGSSVPILPANLITKTINGES 306

Query: 303 --MDYDGLK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
             M Y+ L       G+ LG+   I  D    I++  W  + FY HESCGQC+PCREGTG
Sbjct: 307 RLMSYESLADGGFATGTMLGSGGFIAFDEDQCIVRNTWNFTRFYHHESCGQCSPCREGTG 366

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           WM +++ ++  G     +IDLL++V + IEG TIC LGDAAAWP+   I++FR   E  I
Sbjct: 367 WMEKILHKIEIGKGSMADIDLLWDVQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHI 426


>gi|255318320|ref|ZP_05359555.1| NADH oxidoreductase, f subunit [Acinetobacter radioresistens SK82]
 gi|262379064|ref|ZP_06072220.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter
           radioresistens SH164]
 gi|255304632|gb|EET83814.1| NADH oxidoreductase, f subunit [Acinetobacter radioresistens SK82]
 gi|262298521|gb|EEY86434.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter
           radioresistens SH164]
          Length = 442

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 162/403 (40%), Positives = 231/403 (57%), Gaps = 6/403 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   ++   K L      ++  VKA+ ++GRGGAGF  G+KWS M    +  P YL
Sbjct: 33  DDYETLEGYEGFKKALGMPPKDVLEIVKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYL 92

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 93  ICNADEMEPGTFKDRLLMERLPHQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEAL 152

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 153 EQIRAKGYLGENILDTGWNFEMYVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 212

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY G   G+  + GTK++  SG V +P   E  
Sbjct: 213 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 272

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE+H GG+R G   L A +PGG+S   L A  +    MD D + + GS LGT
Sbjct: 273 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLTADHI-DLPMDSDSIMKAGSRLGT 330

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V D +  ++ A   L  F+  ESCG CTPCR+G  W ++ +  +  G  +  +I  
Sbjct: 331 CLLMVFDENQCMVSATRNLEEFFARESCGWCTPCRDGLPWSVKALRSIENGEGKMEDIQH 390

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           L E++K +  G+T CA    A  P+Q  +K +R   E +I  +
Sbjct: 391 LQELTKKLWIGKTFCAHAPGAMEPLQSALKYWRHEFEAKIKDH 433


>gi|300310807|ref|YP_003774899.1| NAD-dependent formate dehydrogenase beta subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300073592|gb|ADJ62991.1| NAD-dependent formate dehydrogenase beta subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 520

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 154/414 (37%), Positives = 228/414 (55%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q+R+ F  +  +   SL D ++   +  +   L K  + I+ E+ ASGLRGRGGA 
Sbjct: 102 FLKNQERLTFARVGIIDPLSLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAA 161

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +  S    Y+V NADE + GT  DR IM  +P TLIEG  IA  A+GA 
Sbjct: 162 FPTGIKWQTVLRAQS-AQKYVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGAT 220

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IYVR E+     +L+ A+   +A G LG +    G    + V  GAGAYICGEETA+
Sbjct: 221 EGYIYVRSEYPHSIATLEQAIAIAHAQGYLGDDILGSGKSFRLEVRKGAGAYICGEETAM 280

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NN+ S+A VP IL RGA +Y  FG   + G
Sbjct: 281 LESLEGKRGVVRAKPPLPAIEGLFGKPTVINNLISLASVPVILARGADFYKNFGVGRSHG 340

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE++  +T  +L+E   GG   G   + AV  GG     LP  Q 
Sbjct: 341 TLPFQLAGNIRQGGLVEKAFGLTLRQLLEDFGGGSASGRP-IRAVQMGGPLGAYLPQSQ- 398

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+    +G+ +G   ++  D S D+ +       F   ESCG+CTPCR G+   
Sbjct: 399 FDTPLDYEAFAAIGAMIGHGGLVAFDDSVDMARQARYAMQFCAVESCGKCTPCRIGSTRG 458

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + V+++++    + ++I LL  +   +   ++CA+G    +P+   + +F    
Sbjct: 459 VEVIDKIIANDDRAQQIHLLKSLCDTMVNGSLCAMGGMTPFPVLSALNHFPEDF 512


>gi|254481135|ref|ZP_05094381.1| NADH oxidoreductase (quinone), F subunit [marine gamma
           proteobacterium HTCC2148]
 gi|41582334|gb|AAS07948.1| NADH-quinone oxidoreductase, F subunit [uncultured marine bacterium
           463]
 gi|214038930|gb|EEB79591.1| NADH oxidoreductase (quinone), F subunit [marine gamma
           proteobacterium HTCC2148]
          Length = 431

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/414 (39%), Positives = 233/414 (56%), Gaps = 9/414 (2%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--KV 72
            +   ++   + G +  +   L +  +  +  +K S LRGRGGAGF TGMKWSF+P    
Sbjct: 15  RRPTDMAAYEANGGYQGLRAALAQSPEDCLQVLKDSNLRGRGGAGFPTGMKWSFVPMGDK 74

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
           CS    YL+ NADE EPGT KDR ++  +PH LIEG +++++ + A  A+I++R E+ + 
Sbjct: 75  CSPGHKYLICNADEMEPGTFKDRLLLECDPHQLIEGMIVSAYTLQADVAYIFIRAEYHQA 134

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              LQ A+  C+  G LG +    GY +++ VH  AG YICGEETAL+ SLEGK+  PR 
Sbjct: 135 TRLLQEAIAACHEKGYLGQDILGTGYQLEMHVHSSAGRYICGEETALISSLEGKRANPRA 194

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           KPPFP   GL+G PT VNNVE++  V  I+ RGA W+   G   + GTKL+ +SG V  P
Sbjct: 195 KPPFPQVSGLWGRPTIVNNVETLCNVHHIIERGAEWFKSLGLTEDAGTKLYGVSGRVKNP 254

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M     ++IE++ GG+  G+ NL   +PGG S   L    +    MDYD + + 
Sbjct: 255 GCWELPMGTPVRQIIEEYAGGMEDGY-NLKGFLPGGGSTDFLTEEHL-DLAMDYDTIGKA 312

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS +GT  +I++D  T  +  +  L  F+  ESCG CTPCR+G  W  +V++ +  G  Q
Sbjct: 313 GSRMGTGTMIILDDKTCPVGFVKNLVAFFARESCGFCTPCRDGLPWSAQVLDDIQNGRGQ 372

Query: 372 KREIDLLYEVSKNIE--GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           + ++D L    K I   G T CAL   A  P+Q  +K F    E  +     C 
Sbjct: 373 EEDMDTLARQVKFIGAIGNTHCALAPGAMEPLQSAMKYFPEAFENHLSGN--CP 424


>gi|327403949|ref|YP_004344787.1| NADH dehydrogenase subunit F [Fluviicola taffensis DSM 16823]
 gi|327319457|gb|AEA43949.1| NADH dehydrogenase subunit F [Fluviicola taffensis DSM 16823]
          Length = 447

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 200/415 (48%), Positives = 263/415 (63%), Gaps = 16/415 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +S       G + +V+K L+      ++ EV+ASGLRGRGGAGF TGMKWSF+ K     
Sbjct: 16  ESFEVYRKNGGYRSVEKALKTMSPQNVVEEVQASGLRGRGGAGFPTGMKWSFLAK-PEGV 74

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YL+ NADESEPGT KDR +M   PH L+EG +++S+A+G + ++IY+RGE++   E +
Sbjct: 75  PRYLLCNADESEPGTFKDRYLMEKIPHLLVEGMIVSSYALGCNQSYIYIRGEYMWVLEIV 134

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ E YA+G LG N    GYD+D+ +  G GAYICGEETAL+ESLEGK+G PR+KPPF
Sbjct: 135 EKAIAEAYANGFLGKNILGSGYDLDLAIAPGGGAYICGEETALIESLEGKRGNPRIKPPF 194

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+GCPT VNNVESIA V  I+  G + Y+  G   + GTKL S  G++  P   E
Sbjct: 195 PAVKGLWGCPTVVNNVESIAAVVPIVNDGGAEYAKIGIGKSTGTKLISACGNLVKPGVYE 254

Query: 256 ESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR------GAIMDYDG 307
             + +T +E I   + CGGI      + A +PGGSSVP LPA  +         +M Y+G
Sbjct: 255 IELGMTVEEFIYSDEWCGGIA-NGKKIKACVPGGSSVPILPANLITKTAEGVDRLMSYEG 313

Query: 308 LK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           L       GS LG+   IV D    I++  W  + FY HESCGQC+PCREGTGWM +V+ 
Sbjct: 314 LAEGGFATGSMLGSGGFIVFDEDQCIVRNTWNFARFYAHESCGQCSPCREGTGWMEKVLR 373

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RL  G     +IDLL E++K IEG TIC LGDAAAWP+   I++FR   E  +  
Sbjct: 374 RLENGQGHMHDIDLLAEINKKIEGNTICPLGDAAAWPVAAAIRHFREEFEWHVTH 428


>gi|288917188|ref|ZP_06411557.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EUN1f]
 gi|288351379|gb|EFC85587.1| NADH-quinone oxidoreductase, F subunit [Frankia sp. EUN1f]
          Length = 445

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 198/407 (48%), Positives = 267/407 (65%), Gaps = 6/407 (1%)

Query: 8   IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T  + + +  +L+       +  + + L +  D +I  VK SGLRGRGGAGF TGMKW
Sbjct: 6   VLTRRWNVPESWTLATYERLDGYQGLRRALAQAPDDLIKLVKDSGLRGRGGAGFPTGMKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F+P+    +PHYLV+NADE EPGTCKD  +M+ +PH+LIEG VIA++A+ A+ AFIY+R
Sbjct: 66  GFIPQ-GDGKPHYLVINADEGEPGTCKDAPLMKADPHSLIEGIVIAAYAVRANRAFIYLR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE I     L+AAV E Y +G LG +    G+D++++VH GAGAYICGEETALL+SLEG+
Sbjct: 125 GELIHAARRLRAAVAEAYEAGYLGRDILGSGFDLELVVHSGAGAYICGEETALLDSLEGR 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +GQPRL+PPFPA  GLY  PT VNNVE+IA VP I+  G  W+   GRE   G K++S+S
Sbjct: 185 RGQPRLRPPFPATHGLYASPTVVNNVETIATVPFIVNYGVDWFRSMGRERAPGPKIYSLS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M  T  EL+E   G +      L A  PGGSS P L A  +    +D+
Sbjct: 245 GHVTRPGQYEAPMGTTLRELLEMAGGVLG--GRKLKAWTPGGSSTPLLTADHL-DVPLDF 301

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G++E GS LGTAA+++MD + D++  + RL+ FY HESCG+CTPCREGT WM++++ R+
Sbjct: 302 EGVQEAGSLLGTAALMIMDETVDMLPVVRRLTQFYAHESCGKCTPCREGTTWMVQILSRM 361

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +G     ++D L +   NI GR  CAL D A  PI   IK+FR   
Sbjct: 362 ERGHGDSDDVDTLVDACDNIFGRAFCALADGATSPIVSGIKHFRNEF 408


>gi|332981956|ref|YP_004463397.1| NADH dehydrogenase (quinone) [Mahella australiensis 50-1 BON]
 gi|332699634|gb|AEE96575.1| NADH dehydrogenase (quinone) [Mahella australiensis 50-1 BON]
          Length = 434

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 155/419 (36%), Positives = 238/419 (56%), Gaps = 7/419 (1%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           R+      +    +S+ +S G +  + K L       II+EVKASGL GRGGA F TG+K
Sbjct: 8   RLTQRCGNIDPSDISEYISTGGYKALVKALLTMKPQDIIDEVKASGLLGRGGAAFPTGLK 67

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
              +     D   Y+V NADE EPGT KDR +M  +P+ L+EG ++A +A+GA   +IY+
Sbjct: 68  MQMVHDTPGD-VKYVVCNADEGEPGTFKDRYLMEGDPYQLVEGIILAGYAVGAQKGYIYI 126

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGE+ +  E ++ AV++    G LG N  K  ++ DI V  GAGAYICGEE AL+ESLEG
Sbjct: 127 RGEYDQAIELMKNAVEQTRKIGYLGDNILKQRFNFDIEVRSGAGAYICGEEFALIESLEG 186

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K G+PR KPP+P   GL+  PT +NNVE++  +P I+  G+  +   G +++ GTKL  +
Sbjct: 187 KSGRPRYKPPYPPISGLWDRPTLINNVETLVNIPYIVSNGSKAFRSAGTDSSAGTKLICL 246

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG++      E    IT  ++I     G+    + L  +  GG+S  C+P+  M    +D
Sbjct: 247 SGNIVNRGVFEVPFGITLKDIIHDIGQGVPDERE-LKMIQIGGASGSCIPSD-MLDVKLD 304

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +  +++ G  +G+ A+I  D S  +I  +  L  F+ HESCG+CTPCREG   +  +++ 
Sbjct: 305 FADMRKNGLSMGSGAIIAFDDSRCVIDIVKSLLKFFAHESCGKCTPCREGNPQLYNLIDD 364

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             KG A     D+L  +++ ++   +C LG A+  PI   ++ F+   +  I+   RC 
Sbjct: 365 FSKGSATPSHYDVLQSLTQTMQQAALCGLGQASPMPIVSTLQYFKDEYDMHIN--GRCP 421


>gi|313206211|ref|YP_004045388.1| NADH dehydrogenase subunit f [Riemerella anatipestifer DSM 15868]
 gi|312445527|gb|ADQ81882.1| NADH dehydrogenase subunit F [Riemerella anatipestifer DSM 15868]
 gi|315023104|gb|EFT36117.1| NADH-ubiquinone oxidoreductase chain F [Riemerella anatipestifer
           RA-YM]
 gi|325336342|gb|ADZ12616.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Riemerella anatipestifer RA-GD]
          Length = 453

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 197/411 (47%), Positives = 265/411 (64%), Gaps = 15/411 (3%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
                +G +   +K L+   + I+ EVK SGLRGRGGAGF TG+KWSF+ K     P +L
Sbjct: 19  DVYRKQGGYQAAEKALKMNPEEILEEVKTSGLRGRGGAGFPTGLKWSFLAK-PEGVPRHL 77

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           VVNADESEPGT KDR +M   PH LIEG +I+S+ +G++ ++IY+RGE+    + L+ A+
Sbjct: 78  VVNADESEPGTFKDRYLMEFIPHLLIEGMLISSYCLGSNASYIYIRGEYSWIPDILEEAI 137

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +E   +G LG N    G+D++I V  G GAYICGEETALLESLEG++G PRLKPPFPA  
Sbjct: 138 EEAKKAGFLGKNILGSGFDLEIYVQRGGGAYICGEETALLESLEGRRGNPRLKPPFPAVK 197

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GL+  PT VNNVESIA V  I+    + Y+  G   + GTKL S  G++N P   E  M+
Sbjct: 198 GLWERPTVVNNVESIAAVVPIINISGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMT 257

Query: 260 ITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLK-- 309
           IT +E I   ++CGGI  G   L A IPGGSSVP +PA  +   I      M+Y+ L   
Sbjct: 258 ITVEEFIYSDEYCGGIPNG-KRLKACIPGGSSVPIVPANLLLRTIDGKPRYMNYESLSEG 316

Query: 310 --EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
               G+ +G+   IV+D    ++K    L+ FY HESCGQCTPCREGTGWM R+++++V+
Sbjct: 317 GFATGTMMGSGGFIVLDEDQSVVKHTMTLARFYNHESCGQCTPCREGTGWMYRILKKIVE 376

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           G  +  +IDLL+++ + IEG TIC LGDAAAWP+   I++FR   E  +  
Sbjct: 377 GKGEMSDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWYVKN 427


>gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 614

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 153/422 (36%), Positives = 227/422 (53%), Gaps = 7/422 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFST 62
           Q RI   N   L  +++ + ++   +  + K +       +I+ + ASGLRGRGG GF T
Sbjct: 133 QARIVLRNTGRLNPENIEEYLADDGYAALAKAVTQMTPQQVIDLITASGLRGRGGGGFPT 192

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           G KW F     S+   +++ NADE +PG   DR ++  +PHT++E   I  +AIGAH   
Sbjct: 193 GRKWQFAADQKSE-EKFIICNADEGDPGAFMDRAVLEGDPHTVLEAMAIGGYAIGAHTGV 251

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           IY+R E+      L+ A+ +    GLLG N    G+D  I + +GAGA++CGEETAL+ S
Sbjct: 252 IYIRAEYPLAVRRLEIAIRQAEELGLLGRNIFDSGFDFRIEIKYGAGAFVCGEETALIHS 311

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGK+G+P +KPPFPA  GL+  PT VNNVE+ A V  I+R+GA W+   G   + GTK+
Sbjct: 312 IEGKRGEPTVKPPFPAVEGLWKKPTVVNNVETYACVGAIVRKGAEWFRSLGTAGSPGTKV 371

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F+++G V     VE  M  T  +++    GGI+       AV  GG S  C+    +   
Sbjct: 372 FALAGKVAKVGLVEVPMGTTLRDIVFGIGGGIK-NGRAFKAVQTGGPSGGCITPANL-DL 429

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +DY+ LK +GS +G+  +IVMD    ++        F   ESCG+CTPCR G   M  +
Sbjct: 430 PIDYEALKSIGSMMGSGGMIVMDEDDCMVNIAKFFLEFTLDESCGKCTPCRIGNRRMYEM 489

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +  + +G A    ID L  +S  I+   +C LG  +  P+   + NF       +    R
Sbjct: 490 LNEITEGRASLDVIDRLKTLSATIKDTALCGLGQTSPNPVLSTLANFEDEYLAHVKD-SR 548

Query: 422 CN 423
           C 
Sbjct: 549 CP 550


>gi|256425963|ref|YP_003126616.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM
           2588]
 gi|256040871|gb|ACU64415.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM
           2588]
          Length = 454

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 197/412 (47%), Positives = 260/412 (63%), Gaps = 16/412 (3%)

Query: 21  SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
               + G + + +K L+    D +++EVK SGLRGRGGAGF TGMKWSF+ K     P Y
Sbjct: 19  DVYRANGGYGSAEKALKSMSPDQVLDEVKKSGLRGRGGAGFPTGMKWSFIAK-PEGVPRY 77

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           LV NADESEPGT KDR +M   PH LIEG +I+S+ +G +  +IY+RGE+    + L+ A
Sbjct: 78  LVCNADESEPGTFKDRYLMEFLPHLLIEGLLISSYTLGCNSCYIYIRGEYAWIPDILEEA 137

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           + +   +G LG N    G+D++I V  GAGAYICGEETAL+ESLEGK+G PR+KPPFPA 
Sbjct: 138 IADAKKNGWLGKNIQGTGFDLEIYVQRGAGAYICGEETALIESLEGKRGNPRIKPPFPAV 197

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+ CPT VNNVE++A V  ILR G   Y+ +G   + GTKL S  G++N P   E  M
Sbjct: 198 KGLWDCPTVVNNVETLATVVPILRIGGEEYAKYGTGKSTGTKLISACGNINKPGVYEIEM 257

Query: 259 SITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDGLK- 309
           +I+ +E I   ++CGGI      L A IPGGSSVP LPA  +         +M Y+ L  
Sbjct: 258 NISVEEFIYSDEYCGGIA-NGKRLKACIPGGSSVPILPANLLLKTAKGEPRMMTYESLAD 316

Query: 310 ---EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
                G+ LG+   IV+D    I+K     + FY HESCGQC+PCREGTGWM RV+  + 
Sbjct: 317 GGFATGTMLGSGGFIVLDEDQCIVKNTLTFARFYHHESCGQCSPCREGTGWMKRVLLNIE 376

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            G  +  +IDLL+++ + IEG TIC LGDAAAWP+   I++FR   E  +  
Sbjct: 377 NGKGKMSDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHVLH 428


>gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
 gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
          Length = 594

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 150/422 (35%), Positives = 233/422 (55%), Gaps = 6/422 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFS 61
             + R   N   +  +++ D +    +  ++K+L+      +I E+ ASGLRGRGG GF 
Sbjct: 112 KQERRALKNCGVIDPENIDDFLKNDGYKGIEKVLKTMSNRDVIKEIFASGLRGRGGGGFL 171

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW     + ++   Y+V NADE +PG   DR I+  +PH++IEG +IA +AIGA   
Sbjct: 172 TGIKWEIASNIEAE-QKYIVCNADEGDPGAFMDRSILEGDPHSVIEGMMIAGYAIGATKG 230

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            +Y+R E+      L  A++     G LG N     ++ DI +  GAGA++CGEETAL+ 
Sbjct: 231 LVYIRAEYPLAIHRLSVAIESARKKGFLGKNILGSDFEFDIELKFGAGAFVCGEETALIH 290

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++G+P  KPP+PA  G +  PT VNNVE++  VP IL  G  W+   G E + GTK
Sbjct: 291 SMEGRRGEPTSKPPYPAEKGFWNKPTVVNNVETLVNVPGILLHGKEWFREVGTEKSPGTK 350

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F+++G +N    VE  M IT  E+I +  GGI+       AV  GG S  CL    +  
Sbjct: 351 VFALAGKINNVGLVEVPMGITLREIIFEIGGGIKDN-KKFKAVQTGGPSGGCLTEKDL-D 408

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D L + GS +G+  ++VMD    ++        F   ESCG+CTPCR G   +  
Sbjct: 409 TPIDFDTLSKKGSIMGSGGMVVMDEDDCMVAIAKFFLEFTLDESCGKCTPCRVGNTRLYE 468

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++++ +G     ++ LL E+S+ I+  ++C LG  +A P+   +  F     E +    
Sbjct: 469 MLDKITQGRGTLEDLQLLQELSEGIKATSLCGLGQTSANPVLSTLAQFYDEYVEHVVD-K 527

Query: 421 RC 422
           RC
Sbjct: 528 RC 529


>gi|297625733|ref|YP_003687496.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           (NDH-1, chain F) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921498|emb|CBL56052.1| NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
           (NDH-1, chain F) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 446

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 193/401 (48%), Positives = 249/401 (62%), Gaps = 6/401 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
               L   +  G +D   K L       +I+ VKASGLRGRGGAGF TGMKWSF+P+  +
Sbjct: 17  DSWKLDTYVRGGGYDAARKALTTMKSPEVIDLVKASGLRGRGGAGFPTGMKWSFIPQD-N 75

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +P YLVVN DESEPGTCKD  ++   PHTL+EG +IA +A+ AH AFI+ RGE +    
Sbjct: 76  PKPKYLVVNCDESEPGTCKDMPMLIATPHTLLEGIIIACYAVNAHHAFIFCRGEVLHAIR 135

Query: 135 SLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E Y  G LG +    GYD+DI+VH GAGAYICGEETALL +LEG +GQPRL+P
Sbjct: 136 RLSQAVREAYDKGYLGKDLFGTGYDLDIVVHSGAGAYICGEETALLSALEGHRGQPRLRP 195

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  GLY CPT VNN ESIA VP I+R GA WY   G E ++G  ++S+SGHV  P  
Sbjct: 196 PFPAVEGLYACPTVVNNAESIASVPAIVRNGAEWYQSMGTEKSKGATIYSLSGHVKRPGQ 255

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  + ITF +++E   GG       L    PGGSS P     Q+    +DY+G+   GS
Sbjct: 256 FEAPLGITFRQILEL--GGGVRDGHQLKFFTPGGSSTPMFTPEQL-DVPLDYEGVSAAGS 312

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT A+ V D +T +++   R + FYKHESCG+CTPCREG+ W+++ +  L  G  Q+ 
Sbjct: 313 ILGTKALQVFDETTSVVRTTLRWTEFYKHESCGKCTPCREGSWWLVQTLRNLEAGKGQEG 372

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           ++D L +V  N+  ++ C L D     I   IK+FR   E 
Sbjct: 373 DVDKLLDVCDNVSMKSFCTLADGFVACITSAIKHFRSEFEA 413


>gi|284009324|emb|CBA76486.1| NADH-quinone oxidoreductase chain F [Arsenophonus nasoniae]
          Length = 404

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 170/391 (43%), Positives = 237/391 (60%), Gaps = 6/391 (1%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
              D +++ VK +GL+GRGGAGFSTG+KWS MPK  S    YL+ NADE EPGT KDR +
Sbjct: 1   MSPDQVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDDSMNIRYLLCNADEMEPGTYKDRLL 60

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156
           M   PH LIEG +I ++A+ A+  +I++RGE+I   + L+ A++E  A+GLLG N    G
Sbjct: 61  MEQLPHLLIEGMLIGAYALKAYRGYIFLRGEYIEAAKHLRKAIEEAKAAGLLGKNILATG 120

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           ++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  
Sbjct: 121 FNFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCN 180

Query: 217 VPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           VP I+  G  WY G   G+  + GTKL   SG VN P   E    IT  E++E + GG+R
Sbjct: 181 VPAIIAHGKEWYLGLSEGKSKDAGTKLMGFSGRVNNPGLWELPFGITAREILEDYAGGMR 240

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
            G   L A  PGG+    L    +    MD+D + + GS LGTA  + +D   +++    
Sbjct: 241 EGL-TLKAWQPGGAGTDFLTEAHL-DLAMDFDSIAKAGSRLGTALAMAVDHKINMVSLTR 298

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICAL 393
            L  F+  ESCG CTPCR+G  W +++++ L +G  Q  +I+ L ++ + +  G+T CA 
Sbjct: 299 NLEQFFARESCGWCTPCRDGLPWSVKILQALERGEGQPGDIETLEQLCRFLGPGKTFCAH 358

Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
              A  P+Q  IK FR   E  I Q +  N 
Sbjct: 359 APGAVEPLQSAIKYFRAEFEAGISQQNLANL 389


>gi|169832066|ref|YP_001718048.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638910|gb|ACA60416.1| NADH dehydrogenase (quinone) [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 539

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 143/427 (33%), Positives = 234/427 (54%), Gaps = 8/427 (1%)

Query: 1   MLTDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGG 57
               Q R+   N   +  + +++ ++R  +  + ++L    G   +++ V+ SGLRGRGG
Sbjct: 108 FFEKQQRVVLDNSGLIDPEDINEYIARDGYFALAEVLRSRAGPADVVDAVRRSGLRGRGG 167

Query: 58  AGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           AGF TG KW F          Y++ NADE +PG   DR I+   PH ++EG +IA +A+G
Sbjct: 168 AGFPTGEKW-FFAAAQEGPEKYIICNADEGDPGAFMDRSILEGNPHAVLEGMLIAGYAVG 226

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEET 176
           A   ++YVR E+    + L+ A+ +    GLLG       +D D+ +  GAGA++CGEET
Sbjct: 227 AQEGYVYVRAEYPLAVKRLEIAIRQAQKLGLLGKGILGSDFDFDVDIALGAGAFVCGEET 286

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S  G +G+PR++PP+P   GLY  PT +NNVE++A VP I+R G  W++  G E +
Sbjct: 287 ALLRSAMGFRGEPRVRPPYPVEKGLYDKPTIINNVETLANVPAIIRNGPEWFAAMGTEGS 346

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           +GTK+FS++G +     +E  M I+  +++     G       + AV  GG S   +PA 
Sbjct: 347 KGTKIFSLAGQIKNTGLIEVPMGISLADIVYDIGAGPP-PGRRIKAVQTGGPSGGAVPAE 405

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DY+ L+ +G+ +G+  +IV+D +  ++        F  HESCG CT CR G  
Sbjct: 406 -LLDVPVDYESLQAVGTIMGSGGLIVLDNTDCMVDLAKFYMQFAAHESCGACTLCRVGVV 464

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++ ++ER+ +G     ++  L E++ ++   ++C LG  AA P+   +K F       +
Sbjct: 465 HVVDILERITQGEGTLDDLQELEELAYDVRDASLCGLGQTAANPVLSTMKYFWDEYLAHV 524

Query: 417 DQYHRCN 423
               RC 
Sbjct: 525 RD-RRCP 530


>gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
          Length = 624

 Score =  445 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 151/424 (35%), Positives = 234/424 (55%), Gaps = 6/424 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAG 59
              Q RI       +  +S+ + M+ G +  + K L     + +I EV+ SGLRGRGG G
Sbjct: 137 FARQTRIVLEQCGNIDAESVEEYMAAGGFSALKKALFAMTPEAVIAEVEFSGLRGRGGGG 196

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G KW  +     +   Y+V N DE +PG   D  +M  +P  LIEG ++A +A+GA 
Sbjct: 197 FPAGRKWRQVAAHKEEPLKYIVCNGDEGDPGAFMDGSVMEGDPCRLIEGMMLAGYAVGAS 256

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             FIYVR E+      L+ A+ +    GLLG +    G+   + ++ GAGA++CGE +AL
Sbjct: 257 EGFIYVRAEYPLSVARLRQAIGQMEERGLLGDSILGTGFSFHLHINRGAGAFVCGEGSAL 316

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
             S+EG +G PR+KPP   + GL+G PT +NNVE+ A +P I+  G  W+   G EN+ G
Sbjct: 317 TASIEGHRGMPRVKPPRTVDQGLWGKPTVLNNVETYANLPGIIVNGGKWFRTIGTENSTG 376

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK FS++G +     VE  M  T   +I   CGG++ G +   AV  GG S  CL    +
Sbjct: 377 TKTFSVTGCIENTGLVEVPMGTTLRTIIYDICGGLKEGSE-FKAVQIGGPSGGCLTEEHL 435

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D+D +++    +G+  ++VMD+ T +++       F + ESCG+C PCREGT  M
Sbjct: 436 -DEPLDFDSVQKFNVIIGSGGLVVMDKHTCMVEVARFFMNFTQRESCGKCVPCREGTKRM 494

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ER+V+G  +  +I+ L +++  I    +C LG +A  P+   IK FR    E I++
Sbjct: 495 LEILERIVEGKGEPDDIERLEQLADMISNTALCGLGKSAPLPVISTIKAFRKEYLEHINE 554

Query: 419 YHRC 422
             +C
Sbjct: 555 -KKC 557


>gi|313200988|ref|YP_004039646.1| NADH dehydrogenase (quinone) [Methylovorus sp. MP688]
 gi|312440304|gb|ADQ84410.1| NADH dehydrogenase (quinone) [Methylovorus sp. MP688]
          Length = 516

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 221/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    SL+D ++   +  +   L      I+ +V  SGLRGRGGA F
Sbjct: 98  LKQQERLTFARVGITDPVSLTDYLAHDGYRGLQNALALQPAEIVQQVTDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA+ A+GA  
Sbjct: 158 PTGIKWKTVHDCKAD-QKYIVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAALAVGATQ 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+      L  A+        LG N    G+  ++ V   AGAY+CGEET+LL
Sbjct: 217 GYIYLRSEYPHALAVLNEAIQHAREKHYLGPNILGSGHAFELEVRRAAGAYVCGEETSLL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S A VP IL +G ++Y  +G   +RGT
Sbjct: 277 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISFASVPIILDKGGAFYRDYGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE++  +T  +L+    GG   G   + AV  GG     LP  Q  
Sbjct: 337 LPIQLAGNIKHGGLVEKAFGVTLRQLLYDFGGGSATGRP-IRAVQVGGPLGAYLPESQ-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + LG   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPLDYEEFSKLWAVLGHGGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            VM+++++G    + I L+ ++S  +   ++CALG    +P+   I +F    
Sbjct: 455 EVMDKIMQGRDHAQNIALVRDLSDTMLNGSLCALGGMTPYPVLSAINHFPEDF 507


>gi|330981367|gb|EGH79470.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 452

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|108744329|gb|ABG02414.1| FdsB [Xanthobacter flavus]
          Length = 520

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 151/413 (36%), Positives = 222/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +   SL+D  + G +  +++ +  G    + EV  SGLRGRGGAGF
Sbjct: 100 LKKQTRLTFARIGIIDPLSLTDYKAHGGYRGLERAITLGPSATVEEVVESGLRGRGGAGF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 160 PTGIKWRTVAAAPAD-QRYIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGATR 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y R E+      ++ A+++   +GLLG +    G   D+ +  GAGAY+CGEETALL
Sbjct: 219 GYVYCRSEYPLAFVVMEKAIEKARMAGLLGDDILGSGLAFDMEMRMGAGAYVCGEETALL 278

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+ GL+G PT +NN+ S+A VP IL +G  +Y  FG   +RGT
Sbjct: 279 ESLEGKRGLVRAKPPLPAHKGLFGKPTVINNLVSLATVPIILDKGGKYYRDFGMGRSRGT 338

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V Y    E +  I   EL+    GG   G   + AV  GG     LP  Q  
Sbjct: 339 MPIQIAGNVRYGGLFETAFGIPLGELVNDIGGGTASGRP-VKAVQAGGPLGAYLPVHQ-F 396

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+      + +G   ++V D + D+         F  HESCG+CTPCR G+   +
Sbjct: 397 DTPFDYEAFAAKDALIGHGGLVVFDDTADMADMAKFAMEFCAHESCGKCTPCRIGSTRGV 456

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +E+++ G  +   + LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 457 ETLEKVIAGERRDENLALLEDLCHTMKLGSLCALGGFTPYPVVSALTHFPEDF 509


>gi|145298719|ref|YP_001141560.1| NADH dehydrogenase I subunit F [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851491|gb|ABO89812.1| NADH dehydrogenase I, F subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 461

 Score =  445 bits (1145), Expect = e-123,   Method: Composition-based stats.
 Identities = 166/407 (40%), Positives = 235/407 (57%), Gaps = 7/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +D   K L +   D I+  VK +GL+GRGGAGF TG+KW  MPK  S
Sbjct: 36  QPVWLDEYQSKQGYDAARKALGQMSPDEIVGTVKDAGLKGRGGAGFPTGVKWGLMPKDES 95

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH LIEG +I++ A+ A+  +I++RGE++    
Sbjct: 96  MNIRYLLCNADEMEPNTWKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAI 155

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 156 HLRRAVIEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 215

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA  G++G PT VNNVE++  VP I+  G +WY G     +   GTKL   SG VN P
Sbjct: 216 PFPAVSGVWGKPTCVNNVETLCNVPAIIGNGVAWYQGLALPGSEDHGTKLMGFSGKVNNP 275

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  EL E + GG++ G+  L A  PGG+    L    +  A M   G+ ++
Sbjct: 276 GVWELPFGITARELFEHYAGGMKPGY-RLKAWQPGGAGTGFLLPEHL-DAQMYTAGIGKV 333

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 334 GTRMGTGLAMAVDDSVNMVGLLRNMEEFFARESCGWCTPCRDGLPWNVKLLRALERGEGQ 393

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + ++  L ++   +  G+T CA    A  P+   +K FR   E  I 
Sbjct: 394 QGDLATLEQLCNFLGPGKTFCAHAPGAVEPLASALKYFRSEFEAGIK 440


>gi|302185027|ref|ZP_07261700.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae
           642]
          Length = 452

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|85858941|ref|YP_461143.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85722032|gb|ABC76975.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 607

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 161/423 (38%), Positives = 241/423 (56%), Gaps = 6/423 (1%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFS 61
               R+  N+  +   S+   +  G ++   K   +   + +I  VK SGLRGRGGAGF 
Sbjct: 178 QQTRRLLENVGKVDPASIESYLQNGGYEAARKAFAEYSPEQVIGIVKDSGLRGRGGAGFP 237

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G+KWSF+PK   +   Y++ NADE EPGT KDR +M   P  LIEG ++  +AIGA   
Sbjct: 238 VGVKWSFVPK--GEMQKYVICNADEGEPGTFKDRVLMEENPQQLIEGMLLCGYAIGATLG 295

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IYVRGE+ R  E LQ+A+D+  A G LG       +D DI V  G GAY+CGEET+L+ 
Sbjct: 296 YIYVRGEYRRSIERLQSAIDQARAKGFLGKKIFGSNFDFDIFVKEGGGAYVCGEETSLIN 355

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G PR++PPFPA  G  G P+ VNNVE+++ +P I+ RGA W+   G     GTK
Sbjct: 356 SMEGKRGYPRVRPPFPAAAGFMGMPSNVNNVETLSSIPMIVARGADWFKSVGTATCAGTK 415

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L+ +SG VN    VE  M  T  ++I+   GG++ G     A + G +         +  
Sbjct: 416 LYCLSGKVNQTGLVELPMGATLRQMIDTFGGGMKSGSSFKFAQVGGAAGGIL--GADLMD 473

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D D   + G  LG+  V+V D+ T  +  +  +  F++HESCGQC PC+ GT  +  
Sbjct: 474 LPLDIDSTIKAGVTLGSGVVLVCDQETCAVDFLLNVLNFFEHESCGQCIPCKLGTSQLHY 533

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           V ++     A++++I L+ + +K ++  ++CALG +   PI+ +I+NFR    +  D  +
Sbjct: 534 VAQKFAMREAEEKDIQLMIDTAKMMKLASLCALGQSPILPIETMIRNFREEFVKHCDPDY 593

Query: 421 RCN 423
            C 
Sbjct: 594 ECP 596


>gi|238897509|ref|YP_002923188.1| NADH dehydrogenase I chain F [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465266|gb|ACQ67040.1| NADH dehydrogenase I chain F [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 472

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/415 (39%), Positives = 241/415 (58%), Gaps = 12/415 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  +    K L     + I++ VK +GL+GRGGAGFSTG+KWS MPK  +
Sbjct: 33  QPLWLEEYRNKNGYLGAKKALTRLTPEEIVHSVKEAGLKGRGGAGFSTGLKWSLMPKDPN 92

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            R  YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 93  MRIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALQAYRGYIFLRGEYIEAAV 152

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E    GLLG N    G+D +++VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 153 HLRRAIVEATQVGLLGKNIMGSGFDFELMVHTGAGRYICGEETALINSLEGRRANPRSKP 212

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF-------GRENNRGTKLFSISG 246
           PFPA+ G++G PT VNNVE++  VP I+  G +WY G         +  + GTKL   SG
Sbjct: 213 PFPASSGVWGKPTCVNNVETLCNVPAIMEHGVAWYQGIAPDASRFAKSKDTGTKLMGFSG 272

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E    I+  E++E + GG++ G     A  PGG+    L    +    MD++
Sbjct: 273 RVKNPGVWELPFGISAREILEDYAGGMKNGLK-FKAWQPGGAGTDFLTEEHL-DLPMDFE 330

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + + GS LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W +++++ L 
Sbjct: 331 HIGKAGSRLGTALAMAVDHEINMVSLTCNLEEFFARESCGWCTPCRDGLPWSVKILKALE 390

Query: 367 KGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +G  ++ +I+ L ++ + +  G+T CA    A  P+Q  +K FR      I +  
Sbjct: 391 RGEGREGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSALKYFREEFIAGITKKE 445


>gi|253998889|ref|YP_003050952.1| NADH dehydrogenase (quinone) [Methylovorus sp. SIP3-4]
 gi|253985568|gb|ACT50425.1| NADH dehydrogenase (quinone) [Methylovorus sp. SIP3-4]
          Length = 516

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 221/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    SL+D ++   +  +   L      I+ +V  SGLRGRGGA F
Sbjct: 98  LKQQERLTFARVGITDPVSLTDYLAHDGYRGLQNALALQPAEIVQQVTDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA+ A+GA  
Sbjct: 158 PTGIKWKTVHDCKAD-QKYIVCNADEGDSGTYSDRMIMEGDPFVLIEGMTIAALAVGATQ 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+      L  A+        LG N    G+  ++ V   AGAY+CGEET+LL
Sbjct: 217 GYIYLRSEYPHALAVLNEAIQHAREKHYLGPNILGSGHAFELEVRRAAGAYVCGEETSLL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S A VP IL +G ++Y  +G   +RGT
Sbjct: 277 ESLEGKRGLVRFKPPLPAIEGLFGKPTVVNNVISFASVPIILDKGGAFYRDYGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE++  +T  +L+    GG   G   + AV  GG     LP  Q  
Sbjct: 337 LPIQLAGNIKHGGLVEKAFGVTLRQLLYDFGGGSATGRP-IRAVQVGGPLGAYLPESQ-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + LG   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPLDYEEFSKLWAVLGHGGIVAFDDTVDMAKMARYAFEFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            VM+++++G    + I L+ ++S  +   ++CALG    +P+   I +F    
Sbjct: 455 EVMDKIMQGRDHAQNIALVRDLSDTMLNGSLCALGGMTPYPVLSAINHFPEDF 507


>gi|331010723|gb|EGH90779.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 452

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 164/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQAKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++    
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAR 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GWWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  + KG  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|111220504|ref|YP_711298.1| NADH dehydrogenase I chain F [Frankia alni ACN14a]
 gi|111148036|emb|CAJ59702.1| NADH dehydrogenase I chain F [Frankia alni ACN14a]
          Length = 443

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 201/407 (49%), Positives = 266/407 (65%), Gaps = 6/407 (1%)

Query: 8   IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T  +   +  ++        +  +   L    D +I  +K SGLRGRGGAGF TGMKW
Sbjct: 6   VLTRRWNTPESWTIETYRRLDGYVALRTALAGDPDDLIKLIKDSGLRGRGGAGFPTGMKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F+P+    +PHYLV+NADE EPGTCKD  +M+ +PH+L+EG +IA++A+ A+ AFIY+R
Sbjct: 66  GFIPQ-GDGKPHYLVINADEGEPGTCKDAPLMKADPHSLVEGIIIAAYAVRANRAFIYLR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE I     L+AAV E YA+G LG +    G+D+D++VH GAGAYICGEETALL+SLEG+
Sbjct: 125 GELIHAGRRLRAAVAEAYAAGYLGRDILGSGFDLDLVVHSGAGAYICGEETALLDSLEGR 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +GQPRL+PPFPA  GLY  PT VNNVE+IA VP I+  G  W+   GRE   G K+FS+S
Sbjct: 185 RGQPRLRPPFPATHGLYASPTVVNNVETIATVPYIVNYGVDWFRTMGRERAPGPKIFSLS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M  T  EL+E   G    G   L A  PGGSS P L A  +  A +D+
Sbjct: 245 GHVTRPGQYEVPMGTTLRELLELAGG--VRGGRALKAWTPGGSSTPMLTAEHL-DAPLDF 301

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G++E GS LGTAA+++MD +TD+++ + RL+ FY HESCG+CTPCREGT WM++++ RL
Sbjct: 302 EGMQEAGSLLGTAALMIMDETTDMLRVVRRLTQFYAHESCGKCTPCREGTSWMVKILSRL 361

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +G     ++D L +   NI GR  CAL D A  PI   IK FR   
Sbjct: 362 ERGQGDASDVDTLVDACDNIFGRAFCALADGATSPIVSGIKYFRDEF 408


>gi|148656362|ref|YP_001276567.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus sp. RS-1]
 gi|148568472|gb|ABQ90617.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus sp. RS-1]
          Length = 449

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 192/415 (46%), Positives = 257/415 (61%), Gaps = 8/415 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVD-KILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +  +L           +  G ++ +   + E+    I+  VK SGLRGRGGAGF TG+KW
Sbjct: 25  VLRDLDIEDIADFEVYLRHGGYEALRIAVTERTPADIVQTVKDSGLRGRGGAGFPTGVKW 84

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F+PK     P YL+ N DESEPGT  +  I+   PH LIEG  I+++AI AH A+IY+R
Sbjct: 85  GFLPK--GVYPRYLLCNCDESEPGTFNNHQIIDRNPHQLIEGIAISAYAIEAHTAYIYIR 142

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF      L+ A+ + Y  G LG N    GYD+DI VH GAGAYICGEETAL+ESLEGK
Sbjct: 143 GEFAAAARRLERAIAQAYERGFLGRNIFGKGYDLDIYVHRGAGAYICGEETALMESLEGK 202

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            GQPRL+PPFPA  GLYG PT +NNVE++  VP I+R GA+WY  FG E + GTK+FSIS
Sbjct: 203 IGQPRLRPPFPAVAGLYGKPTIINNVETLTNVPMIVRHGAAWYRQFGTEKSPGTKVFSIS 262

Query: 246 GHVNYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           GHV  P   E    I   ELI    +C G+R    N+  V+PGG+S   L A  +    M
Sbjct: 263 GHVKRPGNYEAPFGIPLRELIFSPDYCQGMRSD-RNVKIVVPGGASAGWLTADDL-DVTM 320

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DY+ L   GS LG+  VIV+D S   ++  +++  F+KHESCG+CTPCREGT ++++V+ 
Sbjct: 321 DYEALAAKGSMLGSGGVIVLDESVSAVEVAYKMDEFFKHESCGKCTPCREGTYFLVKVLH 380

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           R+  G  +K +I LL++V   + G   C LG++A  PI+  ++ F    E+ I Q
Sbjct: 381 RITHGHGRKEDIPLLHDVYHQMAGNCFCLLGESAVVPIRSALRLFPHEFEQAIAQ 435


>gi|66046430|ref|YP_236271.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257137|gb|AAY38233.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972911|gb|EGH72977.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 452

 Score =  444 bits (1143), Expect = e-123,   Method: Composition-based stats.
 Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|320095553|ref|ZP_08027217.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977531|gb|EFW09210.1| NADH-quinone oxidoreductase subunit F [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 433

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 195/408 (47%), Positives = 242/408 (59%), Gaps = 11/408 (2%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             +L     RG +  +++        II+ VKASGLRGRGGAGF TG+KWSF+P      
Sbjct: 23  SWTLDSYRQRGGYQGLERARTMEPAAIIDAVKASGLRGRGGAGFPTGLKWSFLPPDDGG- 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVNADESEPGTCKD  ++   PH LIEG  I S AIG   AF+Y+RGE       L
Sbjct: 82  PRYLVVNADESEPGTCKDIPLIMGNPHVLIEGIAITSRAIGCDHAFVYLRGEVAHVYRRL 141

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
             AV E   SG+LG        + I  H GAGAYICGEETALL+SLEG++G PRLKPPFP
Sbjct: 142 LRAVREATESGVLG-------GLRITAHAGAGAYICGEETALLDSLEGRRGHPRLKPPFP 194

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A  GLY  PT VNNVE+IA V  + R    WYS  G + ++G  +FS+SGHV  P   E 
Sbjct: 195 AVAGLYARPTVVNNVETIAQVAGVFRNSPEWYSSMGTDKSKGHGIFSLSGHVANPGQFEA 254

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              IT  ELI+   G        L    PGGSS P     ++    +DY+ +   GS LG
Sbjct: 255 PFGITMRELIDMAGG--IRQGHRLKFWTPGGSSTPIFTEDEL-DTPLDYESVGAAGSMLG 311

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T A+ V D +  +++ I R S FY+HESCG+CTPCREGT W+ ++M RL +G     ++D
Sbjct: 312 TRALQVFDETVSVVRVIARWSEFYQHESCGKCTPCREGTYWIKQIMLRLERGEGLPGDVD 371

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           LL E++ NI GR+ C LGDAAA PI   IK FR   E  +    R  F
Sbjct: 372 LLDEIAHNIAGRSFCPLGDAAATPIMSGIKRFREEFEAGLTTPARERF 419


>gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 633

 Score =  444 bits (1142), Expect = e-122,   Method: Composition-based stats.
 Identities = 147/431 (34%), Positives = 233/431 (54%), Gaps = 11/431 (2%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGA 58
             T Q R +  +   +  +S+ + +  G ++   K  L+   + I  E+  SGLRGRGG 
Sbjct: 136 FYTRQQRFVLGDCGTIDPESIDEYLRNGGYEAAKKAFLQMSPEAICTEISESGLRGRGGG 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +   D   Y++ NADE +PG   +R +M   PH++IEG +IA+ AIGA
Sbjct: 196 GFPTGRKWEAARRQAGD-KKYVICNADEGDPGAFMNRSVMEGNPHSVIEGLMIAARAIGA 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
               +YVR E+    E ++ AV +  A G+LG N    G ++   +  GAGA++CGEETA
Sbjct: 255 DETLVYVRAEYPLAVERMRRAVKDATARGILGENVFGSGLNISCEIMEGAGAFVCGEETA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           ++ S+EG++G PR KPPFPA  GL+G PT +NNVE++A    I+R GA  +   G   + 
Sbjct: 315 MIASIEGQRGMPRPKPPFPAQSGLWGKPTIINNVETLAHAVRIVREGAIRFRQLGTPGSP 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG-----GWDNLLAVIPGGSSVPC 292
           GTK F+++GHV     +E     T  E++    GG+             AV  GG S  C
Sbjct: 375 GTKTFALTGHVANTGLIEVPFGTTLREIVHNIGGGVTKSDGSIDPTGFKAVQIGGPSGGC 434

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           L    +    MD+D L+ +G+ +G+  ++ M++ T ++        F + ESCG+C  CR
Sbjct: 435 LTQEHL-DLPMDFDSLRTVGAMVGSGGLVAMNQDTCMVSVARFFMEFTQRESCGKCVLCR 493

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           EGT  M+ +M+ +++G A +  + LL E++  ++  ++C LG  A  P+   +++F    
Sbjct: 494 EGTRQMLALMDDIIEGRADETTLPLLRELAVAVQKGSLCGLGKTAPNPVLSTLRHFPEEY 553

Query: 413 EERIDQYHRCN 423
           E  +     C 
Sbjct: 554 EAHVRD-KVCP 563


>gi|28870533|ref|NP_793152.1| NADH dehydrogenase I, subunit F [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853781|gb|AAO56847.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 452

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 164/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH LIEG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGF-TLKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|291298803|ref|YP_003510081.1| NADH-quinone oxidoreductase F subunit [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568023|gb|ADD40988.1| NADH-quinone oxidoreductase, F subunit [Stackebrandtia nassauensis
           DSM 44728]
          Length = 438

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 186/407 (45%), Positives = 249/407 (61%), Gaps = 5/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               L        +  + K  +   D +I  +K SG RGRGGAGF  GMKW+F+P+    
Sbjct: 24  DAWKLDVYERLDGYAALRKAFKYTPDDLIAFMKESGHRGRGGAGFPVGMKWAFIPQND-G 82

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADE EPGTCKD  +M ++PH+LIEG +IA +A+ A  AFIY+RGE +     
Sbjct: 83  KPHYLVVNADEGEPGTCKDLPLMMNDPHSLIEGIIIACYAVRASRAFIYIRGEAVHAARR 142

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ AV+E  A+G LG N    G D++I+VH GAGAYICGEETALL+SLEG +GQPRL+PP
Sbjct: 143 LRHAVEEAKAAGYLGDNILDSGLDLEIVVHSGAGAYICGEETALLDSLEGFRGQPRLRPP 202

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT +NNV SIA VP I+  GA W+   G EN  GT ++S+SG V  P   
Sbjct: 203 FPATHGLYASPTVINNVGSIASVPHIVLGGAEWWKSLGSENAAGTMIYSLSGRVANPGQY 262

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +  T DEL+E   G  +G   NL    PGGSS P L A +     +D+D + + GS 
Sbjct: 263 ECRLGTTLDELLELAGGMAKG--HNLKFWTPGGSSTPML-AAKHSDVPLDFDNIAKAGSI 319

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+++   +   +   +R   FY HESCG+CTPCREG  WM R+  R++ G     +
Sbjct: 320 LGTTAMMIYSDADCPVYCTYRWLQFYAHESCGKCTPCREGNYWMTRIYRRILSGNGTHED 379

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +D L +   N+ GR+ C LGD A  P+   +K+F+    + I+ + R
Sbjct: 380 LDTLLDACDNLLGRSFCGLGDGATSPVTSSLKHFKQDYIDYIEGHRR 426


>gi|213970031|ref|ZP_03398163.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301381386|ref|ZP_07229804.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062157|ref|ZP_07253698.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato
           K40]
 gi|302130467|ref|ZP_07256457.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213925135|gb|EEB58698.1| NADH dehydrogenase I, F subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|330875769|gb|EGH09918.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 452

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGF-TLKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|258651221|ref|YP_003200377.1| NADH-quinone oxidoreductase, F subunit [Nakamurella multipartita
           DSM 44233]
 gi|258554446|gb|ACV77388.1| NADH-quinone oxidoreductase, F subunit [Nakamurella multipartita
           DSM 44233]
          Length = 439

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 196/409 (47%), Positives = 258/409 (63%), Gaps = 6/409 (1%)

Query: 8   IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           + T  +   +  S+        +  +   L    D +I  VK SGLRGRGGAGF TG+KW
Sbjct: 16  VLTRRWASPRSWSIETYRQLDGYQALRSALTVDPDRLIELVKNSGLRGRGGAGFPTGLKW 75

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+PK  S +PHYLV+NADE EPGTCKD  +M  +PH+LIEGC+I S+AI A    IY+R
Sbjct: 76  SFLPKGGS-KPHYLVINADEGEPGTCKDIPLMMADPHSLIEGCIITSYAIRAPFCAIYIR 134

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE +     + AAV E  A+G LG +    GYD++I+VH GAGAYICGEETALL+SLEG+
Sbjct: 135 GEAVHAIRRVAAAVREAKAAGFLGRDILGSGYDLEIVVHGGAGAYICGEETALLDSLEGR 194

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +GQPRLKPPFPA  GLY  PT VNNVE+IA VP I+  G+ WY   G E + G K++S+S
Sbjct: 195 RGQPRLKPPFPAVEGLYASPTVVNNVETIASVPIIVMGGSDWYRSLGTEKSPGPKIYSLS 254

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV  P   E  M  T  +L+    GG+R G   L    PGGSS P      +    + +
Sbjct: 255 GHVTRPGQYEAPMGTTLRQLL-ASAGGMRDGIP-LKFFTPGGSSTPIFTPEHL-DVPLSF 311

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D +   GS LGT A++  + +  +  A+W+   FYKHESCG+CTPCREGTGW+++++ R+
Sbjct: 312 DDVAAAGSMLGTTALMCFNETVSVPWAVWKWLEFYKHESCGKCTPCREGTGWLVQILRRV 371

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           V G     ++D + + + NI GR+ CALGDAAA PI    K FR   E+
Sbjct: 372 VTGHGTLEDLDTMVDAAGNIAGRSFCALGDAAATPILSSFKYFRSEFED 420


>gi|229490823|ref|ZP_04384658.1| NADH oxidoreductase, f subunit [Rhodococcus erythropolis SK121]
 gi|229322213|gb|EEN87999.1| NADH oxidoreductase, f subunit [Rhodococcus erythropolis SK121]
          Length = 439

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 202/416 (48%), Positives = 263/416 (63%), Gaps = 10/416 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L   +    +  + K L    D +I  VK +GLRGRGGAGF TG+KWSF+P+   D
Sbjct: 15  NSWTLDSYLRHDGYQALRKALAMSPDAVIETVKDAGLRGRGGAGFPTGLKWSFIPQSTED 74

Query: 76  RP-----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           +P     HYLVVNADESEPGTCKD  +M   PHTL+EG +IA++AI A  AFIYVRGE +
Sbjct: 75  KPGDGKPHYLVVNADESEPGTCKDMPLMMATPHTLVEGVIIAAYAIRAAKAFIYVRGEVV 134

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
                LQ AV E YA+G LG +    G+D+D++VH GAGAYICGEETALL+SLEG++GQP
Sbjct: 135 PVLRRLQTAVAEAYAAGYLGRSILGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQP 194

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RL+PPFPA  GLY CPT VNNVESIA VP+I+  G  W+   G E + G  L+S+SGHV 
Sbjct: 195 RLRPPFPAVAGLYACPTVVNNVESIASVPSIVLGGPEWFRSMGSEKSPGFTLYSLSGHVT 254

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P   E  + IT  EL+  + GG+R G   L    PGGSS P      +    +DY+G+ 
Sbjct: 255 TPGQYEAPLGITLRELL-DYAGGVRTG-HTLKFWTPGGSSTPIFTDEHL-DVPLDYEGVG 311

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
             GS LGT A+ + D +T I++A+ R + FY HESCG+CTPCREGT W+++++ RL  G 
Sbjct: 312 AAGSMLGTKALQIFDDTTCIVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILRRLEGGT 371

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             + ++  L ++S  I G++ CALGD A  PI   +K FR       D    C F 
Sbjct: 372 GTEADLTKLLDISDTILGKSFCALGDGATSPIMSSLKYFREEYVAHFDGNG-CPFD 426


>gi|154247408|ref|YP_001418366.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2]
 gi|154161493|gb|ABS68709.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2]
          Length = 520

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 148/413 (35%), Positives = 223/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +   SL+D  + G +  +++ +  G    + EV  SGLRGRGGAGF
Sbjct: 100 LKKQTRLTFARIGIIDPLSLTDYKAHGGYRGLERAITLGPSATVEEVVESGLRGRGGAGF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 160 PTGIKWRTVAAAPAD-QRYIVCNADEGDSGTFADRLIMEADPFCLIEGMTIAGLAVGATK 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y R E+      ++ A+++   +GLLG N    G   D+ +  GAGAY+CGEETALL
Sbjct: 219 GYVYSRSEYPLAFVVMEKAIEKAREAGLLGDNILGSGLSFDMEMRMGAGAYVCGEETALL 278

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+ GL+  PT +NN+ S+A VP IL +G  +Y  FG   +RGT
Sbjct: 279 ESLEGKRGLVRAKPPLPAHKGLFQKPTVINNLVSLATVPVILDKGGKYYRDFGMGRSRGT 338

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G++ +    E +  I   EL+    GG   G   + AV  GG     LP  Q  
Sbjct: 339 MPIQIAGNIKFGGLFETAFGIPLGELVYDIGGGTASGRP-VKAVQAGGPLGAYLPTHQ-F 396

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+      + +G   ++V D + D+         F  HESCG+CTPCR G+   +
Sbjct: 397 DTPFDYEAFAAKDALIGHGGLVVFDDTADLADMAKFAMEFCAHESCGKCTPCRIGSTRGV 456

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +++++ G  +++ + LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 457 ETIDKVIAGEKREQNLALLTDLCHTMKLGSLCALGGFTPYPVLSALNHFPEDF 509


>gi|294140411|ref|YP_003556389.1| NADH dehydrogenase I subunit F [Shewanella violacea DSS12]
 gi|293326880|dbj|BAJ01611.1| NADH dehydrogenase I, F subunit [Shewanella violacea DSS12]
          Length = 456

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 161/418 (38%), Positives = 239/418 (57%), Gaps = 11/418 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-VCS 74
               LS+ +S G +D + + ++   D +++ +K S LRGRGGAGF TG+KWSF+P+   +
Sbjct: 17  NCWQLSEYLSHGGYDGLTRAMKMSSDELLDTIKQSNLRGRGGAGFPTGLKWSFVPRGADA 76

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +  YL+VNADE EPG  KDR ++   PH +IEG +I    +GA   +I++RG++    E
Sbjct: 77  PKEKYLIVNADEMEPGAFKDRWLLEQTPHQIIEGLLIGGLTLGATQGYIFLRGDYYLAEE 136

Query: 135 SLQAAVDECYASGLLGSNS------KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
            L  A++EC    LLG +          ++ +I +H  AG YICGEETAL+ ++EGK+  
Sbjct: 137 RLLQAIEECKQHQLLGRDILGRGIQGQAFNFEIHIHSSAGRYICGEETALINAMEGKRAT 196

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR KPPFP   GL+G PT VNNVE+   +P I+  G+ W+   G+  + GTK+F +SG V
Sbjct: 197 PRAKPPFPQVAGLWGKPTIVNNVETFCNLPHIINFGSDWFKALGKGQDAGTKIFGVSGRV 256

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E  M  +  E+IE H GG+  G+  L   +PGG S   L    +  A MDYD +
Sbjct: 257 KRPGLWELPMGTSIREIIEHHAGGMCDGY-RLKGFLPGGGSTDFLLEEHL-DARMDYDEI 314

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            ++GS +GT  +I++D     I  +  L  F+  ESCG CTPCREG  W + ++E++ +G
Sbjct: 315 GKLGSRMGTGTIIILDDQYCPISMVLNLVRFFAQESCGWCTPCREGLPWAVSLLEKIERG 374

Query: 369 IAQKREIDLLYEVSK-NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             + ++I+ L  +      G T CAL   A  P+Q  +K FR   E  I+    C + 
Sbjct: 375 EGELKDIEQLENLCDFAAPGNTFCALAPGAVEPLQSALKFFRQDFEAHINHQC-CPYH 431


>gi|330900630|gb|EGH32049.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 423

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 1   EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 60

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 61  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 120

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 121 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 180

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 181 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 240

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 241 GLWELPFGVQAPELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 298

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q
Sbjct: 299 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQ 358

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 359 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 404


>gi|156743330|ref|YP_001433459.1| NADH-quinone oxidoreductase subunit F [Roseiflexus castenholzii DSM
           13941]
 gi|156234658|gb|ABU59441.1| NADH-quinone oxidoreductase, F subunit [Roseiflexus castenholzii
           DSM 13941]
          Length = 451

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 189/418 (45%), Positives = 258/418 (61%), Gaps = 8/418 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVD-KILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +  +L           +  G ++ +   + E+    I+  VK SGLRGRGGAGF TG
Sbjct: 24  EHIVLRDLDIENIADFDVYLQHGGYEALRIAVTERTPADIVQTVKDSGLRGRGGAGFPTG 83

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW F+PK     P YL+ N DESEPGT  +  I+   PH LIEG  I+++AI A+ A+I
Sbjct: 84  VKWGFLPK--GVYPRYLLCNCDESEPGTFNNHQIIDRNPHQLIEGIAISAYAIEANLAYI 141

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGEF      L+ A+ + YA G LG N    GYD+DI VH GAGAYICGEETAL+ESL
Sbjct: 142 YIRGEFAAAARRLERAIAQAYARGFLGRNIFGTGYDLDIYVHRGAGAYICGEETALMESL 201

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK GQPRL+PPFPA  GLYG PT +NNVE++  VP I+R GA WY  FG E + GTK+F
Sbjct: 202 EGKIGQPRLRPPFPAVAGLYGKPTIINNVETLTNVPMIVRHGAVWYRQFGTEKSPGTKVF 261

Query: 243 SISGHVNYPCTVEESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           S+SGHV  P   E        ELI   ++C G+RG   N+  V+PGG+S   L A  +  
Sbjct: 262 SVSGHVKRPGNYEAPFGTPLRELIFSPEYCQGMRGN-HNVKIVVPGGASAGWLTADDL-D 319

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDY+ L   GS LG+  VIV+D   + ++  +++  F+KHESCG+CTPCREGT ++++
Sbjct: 320 VTMDYEALAAKGSMLGSGGVIVLDERVNAVEVAYKMDEFFKHESCGKCTPCREGTYFLVK 379

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           V+ R+  G  ++ +I LL++V   + G   C LG++A  PI+  ++ F    E  I Q
Sbjct: 380 VLHRITHGHGRQDDIPLLHDVYNQMAGNCFCLLGESAVVPIRSALRLFPHEFERAIAQ 437


>gi|322419374|ref|YP_004198597.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320125761|gb|ADW13321.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 489

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 146/424 (34%), Positives = 228/424 (53%), Gaps = 7/424 (1%)

Query: 3   TDQDRIFT-NLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60
             Q RI T N   +  +S+   +    ++ + + +  +    I+NE+K SGLRGRGG GF
Sbjct: 5   KKQYRIATRNCGFIDPESIDAYIQVRGYEALAEAVTNRQPADIVNEIKKSGLRGRGGGGF 64

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW    +  +D   Y+V NADE +PG   DR ++  +PH+++E   +  +AIGA  
Sbjct: 65  PTGLKWEITARNQAD-QKYVVCNADEGDPGAFMDRAVLEGDPHSVVEAMALCGYAIGATV 123

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
             +Y+R E+    + LQ A+ +   +G+LG      G+D DI + +GAGA++CGEETAL+
Sbjct: 124 GTVYIRAEYPLAIKRLQMAIKDAREAGVLGKRIFGSGFDFDIELKYGAGAFVCGEETALI 183

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+EG++G+P  KPPFPA  G +G PT +NNVE+ A V  IL  G  W++G G E ++GT
Sbjct: 184 HSMEGERGEPTTKPPFPAESGYWGKPTAINNVETFANVVPILLNGGDWFAGIGTEKSKGT 243

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F+++G V     +E  M  T  E+     GG   G     AV  GG S   L    + 
Sbjct: 244 KVFALAGKVRNVGLIEVPMGTTLHEI-IFEIGGGILGGKKFKAVQTGGPSGGALTERDL- 301

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DYD L   GS +G+  +IVMD    ++        F   E+CG+CTPCR G+  + 
Sbjct: 302 DTPIDYDNLVAKGSMMGSGGMIVMDEDDCMVSVAKFFLDFTMDETCGKCTPCRIGSKRLY 361

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            +++++ +G     ++  L  +S  I+   +C LG     PI   +  F       I++ 
Sbjct: 362 EILDKITRGEGTPEDLSRLKLLSTAIKDTALCGLGQTMPNPILSTMSVFADEYAAHINE- 420

Query: 420 HRCN 423
            +C 
Sbjct: 421 KKCP 424


>gi|146307439|ref|YP_001187904.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas mendocina ymp]
 gi|145575640|gb|ABP85172.1| NADH dehydrogenase subunit F [Pseudomonas mendocina ymp]
          Length = 448

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/408 (39%), Positives = 234/408 (57%), Gaps = 7/408 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  ++  +    K L    +  I+  VK SGL+GRGGAGF TG+KW  MP   S
Sbjct: 31  QPVWLEEYQAKNGYAAARKALTAMAQADIVQTVKDSGLKGRGGAGFPTGVKWGLMPTDES 90

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++    
Sbjct: 91  LDIRYLLCNADEMEPNTWKDRLLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVEAAH 150

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 151 NLNRAIEEAKAAGLLGRNIFGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 210

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I++ G  WY    RE +   GTKL   SG V  P
Sbjct: 211 PFPAAVGVWGKPTCVNNVETLCNVPAIVQHGVDWYKSLAREGSEDHGTKLMGFSGKVKNP 270

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    I+  EL E+H GG+R G+  L    PGG+    L    +  A+M   G+ ++
Sbjct: 271 GLWELPFGISARELFEEHAGGMRDGY-RLKCWQPGGAGTGFLLPEHL-DALMYAGGIAKV 328

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L +G   
Sbjct: 329 GTRMGTGLALAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKILRALERGEGT 388

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + +I  L  +   +  G+T CA    A  P+   IK FR   E  + Q
Sbjct: 389 REDIATLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFREEFEAGVAQ 436


>gi|262376773|ref|ZP_06070001.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter lwoffii
           SH145]
 gi|262308483|gb|EEY89618.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter lwoffii
           SH145]
          Length = 443

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/400 (40%), Positives = 231/400 (57%), Gaps = 6/400 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +    K L      ++  VKA+ ++GRGGAGF  G+KWS M    +  P YL
Sbjct: 33  DDYEALEGYAGFKKALTMSPKDVLEVVKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYL 92

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 93  ICNADEMEPGTFKDRLLMEDLPHQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEAL 152

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 153 EQVRAKGYLGDNILGTGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 212

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY     G+  + GTK++  SG V +P   E  
Sbjct: 213 GAWGRPTIVNNVETYNNLPAIMLRGPEWYINLSAGKSKDPGTKIYGASGKVKFPGLWELP 272

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE H GG+R G   L A +PGG+S   L A  +    MD + + + GS LGT
Sbjct: 273 FGTTAREVIEDHAGGMRDGLK-LKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGT 330

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++ A   L  F+  ESCG CTPCR+G  W ++ ++ L  G  +K +ID 
Sbjct: 331 CLLMVVDETQCMVSATRNLEEFFARESCGFCTPCRDGLPWAVKALKALEDGTGKKEDIDH 390

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           L E+++ +  G+T CA    A  P+ G +K FR   E ++
Sbjct: 391 LQELTRKLWIGKTFCAHAPGAMEPLMGALKYFRGEFEAKV 430


>gi|91775074|ref|YP_544830.1| NADH dehydrogenase (quinone) [Methylobacillus flagellatus KT]
 gi|91709061|gb|ABE48989.1| formate dehydrogenase beta subunit [Methylobacillus flagellatus KT]
          Length = 516

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 146/413 (35%), Positives = 222/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  Q+R+     G+    SL D ++   +  +   ++     I+ +V  SGLRGRGGA F
Sbjct: 98  MKHQERLTFARVGITDPVSLQDYLAHDGYKGLRNAIDMAPQDIVQQVTDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  ++   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 158 PTGIKWKTVLEAPAE-QKYVVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGIAVGATQ 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L  A+   Y +G LG       +D  + V   AGAY+CGEETALL
Sbjct: 217 GYIYVRSEYPHSIAALNLAIKSAYEAGYLGRGILGSRHDFYLEVRRAAGAYVCGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +G+ +Y  +G   +RGT
Sbjct: 277 ESLEGKRGLVRFKPPLPAISGLFGKPTVINNVISLASVPIILDKGSVYYRDYGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE++  +T  EL+  + GG   G   + AV  GG     LP  Q  
Sbjct: 337 LPIQLAGNIKHGGLVEKAFGVTLRELLYDYGGGSASGRP-IKAVQVGGPLGAYLPESQ-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + LG   ++  D + D+         F   ESCG+CTPCR G+   +
Sbjct: 395 DTPLDYEEFGKLWAVLGHGGIVAFDDTVDMAHMARYAFEFCAVESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            VM++++ G    + I L+ ++   +   ++CALG    +P+   + +F    
Sbjct: 455 EVMDKIIAGTDPAKHIALVRDLGDTMLNGSLCALGGMTPYPVLSALNHFPEDF 507


>gi|260551029|ref|ZP_05825234.1| NADH:ubiquinone oxidoreductase [Acinetobacter sp. RUH2624]
 gi|260405977|gb|EEW99464.1| NADH:ubiquinone oxidoreductase [Acinetobacter sp. RUH2624]
          Length = 443

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/421 (39%), Positives = 238/421 (56%), Gaps = 16/421 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+ QD +          S  D  +   +    K L      ++  +KA+ ++GRGGAGF 
Sbjct: 23  LSKQDAV---------HSADDYEALDGYAGFKKALGMKPAEVLEVIKAATVKGRGGAGFP 73

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G+KWS M       P YL+ NADE EPGT KDR +M   PH LIEG +IA + + A   
Sbjct: 74  AGIKWSLMAPNDGG-PRYLICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQG 132

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +I++RGE+I   + L  A+++  A G LG N    G++ ++ VH GAG YICGEETAL+ 
Sbjct: 133 YIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSGWNFELHVHTGAGRYICGEETALIN 192

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRG 238
           SLEG++  PR KPPFP   G +G PT VNNVE+   +P I+ RG  WY G   G+  + G
Sbjct: 193 SLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPG 252

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK++  SG V +P   E     T  E+IE H GG+R G   L A +PGG+S   LPA  +
Sbjct: 253 TKIYGASGKVKFPGLWELPFGTTAREVIEDHAGGMREGLK-LKAWLPGGASTDFLPADTI 311

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MD + + + GS LGT  ++V+D +  ++     L  F+  ESCG CTPCR+G  W 
Sbjct: 312 -DLPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTRNLEEFFARESCGFCTPCRDGLPWA 370

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ L  G  +K +ID L E+++ +  G+T CA    A  P+ G +K+FR   E ++ 
Sbjct: 371 VKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRSEFEAKVT 430

Query: 418 Q 418
            
Sbjct: 431 N 431


>gi|115375223|ref|ZP_01462489.1| NADH-quinone oxidoreductase chain f 2 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367785|gb|EAU66754.1| NADH-quinone oxidoreductase chain f 2 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 405

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 191/397 (48%), Positives = 258/397 (64%), Gaps = 14/397 (3%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
                II+EVK S LRGRGGAGF TG+KWSF+PK  + +P YL VNADESEPGT KDR I
Sbjct: 1   MAPAAIIDEVKKSNLRGRGGAGFPTGLKWSFVPKD-NPKPKYLTVNADESEPGTFKDRYI 59

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156
           +  +PH ++EG  IA++A+G H  +IY+RGEF    +  QAA+ E YA+G+ G       
Sbjct: 60  LSLDPHMMLEGIAIAAYALGVHTCYIYMRGEFKHPAQRTQAAIQEAYAAGIFGKTLLGRD 119

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           Y+++  +  GAGAYICGEETALLESLEGKKG PRLKPPFPA VGL+G PT +NNVE+++ 
Sbjct: 120 YELNCYLVRGAGAYICGEETALLESLEGKKGWPRLKPPFPAVVGLFGSPTVINNVETLSN 179

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCGGIR 274
           VP I  RGA WYS  G + + GT+L  +SG VN P   E  +  T  ELI  +K+  G+ 
Sbjct: 180 VPHIFARGADWYSKLGTDKSGGTRLVCLSGTVNRPGVYEIPLQTTVSELIFGDKYGQGLP 239

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
            G  ++ AVIPGGSS P L   ++    ++++ L+   +  G+  VIVMD ++ +++ +W
Sbjct: 240 AG-RSVKAVIPGGSSAPVLSPNEL-DVALEFEALRLKQTMAGSGGVIVMDDTSCMVRCLW 297

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-------G 387
           R++ FY  ESCGQCTPCREGT W  R++ ++ +G  +  +I++L  V+ +I        G
Sbjct: 298 RVARFYAEESCGQCTPCREGTPWQTRLLRKIEEGRGEMADIEMLSHVASSIAPYPPMGLG 357

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            TICALGDAAA P    +  FR   E  I +  RC F
Sbjct: 358 NTICALGDAAALPTHSFLMRFRAEFEAHIHE-KRCPF 393


>gi|326204154|ref|ZP_08194014.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325985665|gb|EGD46501.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 429

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 150/419 (35%), Positives = 241/419 (57%), Gaps = 6/419 (1%)

Query: 6   DRIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64
           D++ +  +G ++  S+ + +  G ++ + K +       I E+K + L GRGGA + TG+
Sbjct: 2   DKVLSARFGKIKPDSVEEYIQAGGYEGLKKTMSMEHLDAIEEIKKANLFGRGGAAYPTGI 61

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KW     +    P Y+V NADE EPGT KD+ I+  +P  LIEG  I ++ +GA   +IY
Sbjct: 62  KWEQAYAIQRG-PKYMVCNADEGEPGTFKDKHILAEDPFELIEGMTIGAYIMGAKEGYIY 120

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESL 182
           +RGE+   +  +++A++    +G LG N   + G+D ++ V  GAGAY+CGE TAL+ES+
Sbjct: 121 IRGEYAAIQRIVKSAIENAKKAGYLGKNILGREGFDFELKVVSGAGAYVCGENTALVESI 180

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK G+PR KPP+  N GLY  PT +NNVE+ + +P I++ G   +S  G E + GTKL 
Sbjct: 181 EGKTGRPRQKPPYIKNCGLYQMPTILNNVETYSCIPWIIKDGGDKFSSMGTEFSGGTKLM 240

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            +SG+VN     E    +T  ELI    GG++ G   L  V  GGSS  C P   +    
Sbjct: 241 CLSGNVNNRGVYEIPFGLTLRELIFNLGGGMKDGRK-LKFVHLGGSSGSCFPESMI-DTK 298

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           + Y  LK+ G  LG+ AV+V+D +   +  +  +  F++ ESCG+CTPCREG   ++ ++
Sbjct: 299 ICYYDLKKAGFSLGSGAVLVVDDTHCAVDYLKTVMEFFEEESCGKCTPCREGNLRLVEIL 358

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +++ +G A   + + +  +++ ++  + C LG +A  P+  L+K F     E I+   R
Sbjct: 359 DKMTEGTATMADFNKMKSLAQTMKTTSFCGLGQSAPMPLITLVKYFEEEFLEHINGKCR 417


>gi|117618370|ref|YP_856314.1| NADH dehydrogenase I subunit F [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559777|gb|ABK36725.1| NADH-quinone oxidoreductase, f subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 455

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 166/407 (40%), Positives = 237/407 (58%), Gaps = 7/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +D   K L +   D I+  VK +GL+GRGGAGFSTG+KW  MPK  S
Sbjct: 30  QPVWLDEYQSKQGYDAARKALGQMSPDEIVGTVKDAGLKGRGGAGFSTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH LIEG +I++ A+ A+  +I++RGE++    
Sbjct: 90  MNIRYLLCNADEMEPNTYKDRLLMEQLPHLLIEGMIISAKALKAYRGYIFLRGEYVDAAA 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ AV+E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLRRAVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA  G++G PT VNNVE++  VP I+  G +WY G     +   GTKL   SG VN P
Sbjct: 210 PFPAVSGVWGKPTCVNNVETLCNVPAIIGNGVAWYQGLALPGSEDHGTKLMGFSGKVNNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  EL E + GG++ G+  L A  PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGITARELFENYAGGMKPGY-RLKAWQPGGAGTGFLLPEHL-DAQMYAGGIGKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             ++  L ++   +  G+T CA    A  P+   +K FR   E  + 
Sbjct: 388 PGDLATLEQLVSFLGPGKTFCAHAPGAIEPLGSAMKYFRSEFEAGVK 434


>gi|226365385|ref|YP_002783168.1| NADH-quinone oxidoreductase chain F [Rhodococcus opacus B4]
 gi|226243875|dbj|BAH54223.1| NADH-quinone oxidoreductase chain F [Rhodococcus opacus B4]
          Length = 432

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 201/411 (48%), Positives = 267/411 (64%), Gaps = 6/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +  +L        ++ + K L    D +I+ VK +GLRGRGGAGF TGMKWSF+P+   D
Sbjct: 15  ESWTLDTYRRHDGYEGLQKALRMEPDEVISTVKEAGLRGRGGAGFPTGMKWSFIPQ-GDD 73

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH L+EG +IA++AI A  AFIYVRGE +     
Sbjct: 74  KPHYLVVNADESEPGTCKDMPLLLATPHALVEGVIIAAYAIRAGHAFIYVRGEVVPVLRR 133

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           LQAAV E YA+G LG +    G+D++++VH GAGAYICGEETALL+SLEG++GQPRL+PP
Sbjct: 134 LQAAVAEAYAAGYLGKDILGTGFDLELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPP 193

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT VNNVESIA VP I+  G  W+   G E + G  L+S+SGHV  P   
Sbjct: 194 FPAVAGLYASPTVVNNVESIASVPPIIVNGIEWFRSMGSEKSPGFTLYSLSGHVTTPGQY 253

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT  EL+  + GG+R G   L    PGGSS P      +    +DY+G+   GS 
Sbjct: 254 EAPLGITLRELL-GYAGGVRAG-HRLKFWTPGGSSTPIFTDEHL-DVALDYEGVGAAGSM 310

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+ + D +T +++A+ R + FY HESCG+CTPCREGT W+++++ERL +G     +
Sbjct: 311 LGTKALQIFDETTCVVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILERLERGEGTDAD 370

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +  L +++ NI G++ CALGD AA PI   +K FR       +Q   C F 
Sbjct: 371 LQKLLDIADNILGKSFCALGDGAASPIMSSVKYFRDEYLAHFEQGG-CPFD 420


>gi|134103325|ref|YP_001108986.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004456|ref|ZP_06562429.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915948|emb|CAM06061.1| NADH dehydrogenase I chain F [Saccharopolyspora erythraea NRRL
           2338]
          Length = 431

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 204/400 (51%), Positives = 262/400 (65%), Gaps = 5/400 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L+       +  + K L+   D +I  VK +GLRGRGGAGF  G+KWSFMPK    
Sbjct: 21  NSWTLATYEQLEGYSALRKALKAHPDQLIELVKGAGLRGRGGAGFPAGVKWSFMPKEP-V 79

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLV+NADE EPGTCKD  +M  +PH+LIEGCVIAS+A+ A+   IYVRGE +     
Sbjct: 80  KPHYLVINADEGEPGTCKDIPLMMADPHSLIEGCVIASYAMRANNCMIYVRGEALHCIRR 139

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L +AV E YA+G LG N    G+D+DI+VH GAGAYICGEETALL+SLEGK+GQPRLKPP
Sbjct: 140 LSSAVREAYAAGYLGKNILGSGFDLDIVVHAGAGAYICGEETALLDSLEGKRGQPRLKPP 199

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY CPTTVNNVE+IA VP I+  G+ W+   G E + G K++S+SGHV  P   
Sbjct: 200 FPAAAGLYACPTTVNNVETIASVPYIVNGGSDWFRLMGSEKSPGPKIYSVSGHVERPGQY 259

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +  T  EL+E   GG++ G   L    PGGSS P   A  +    +D++G  E GS 
Sbjct: 260 EAPLGTTLRELLE-LAGGMKDGIP-LKFWTPGGSSTPLFTAEHL-DVPLDFEGAAEAGSM 316

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT AV+V + +  +  A+ + + FY+HESCG+CTPCREGT W+ +V+ER+V+G     +
Sbjct: 317 LGTTAVMVFNETVSVPWAVMKWTQFYEHESCGKCTPCREGTFWLAQVLERMVEGRGTPED 376

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +D L +V  NI GR+ CALGD A  PI   IK FR     
Sbjct: 377 VDTLLDVCDNIFGRSFCALGDGAVSPITSGIKYFREEFLA 416


>gi|110637782|ref|YP_677989.1| NADH dehydrogenase I subunit F [Cytophaga hutchinsonii ATCC 33406]
 gi|110280463|gb|ABG58649.1| NADH dehydrogenase subunit F [Cytophaga hutchinsonii ATCC 33406]
          Length = 448

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 202/415 (48%), Positives = 266/415 (64%), Gaps = 16/415 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           ++     S+G +  V+K L+    D ++ EVK SGLRGRGGAGF TGMKWSF+ +  S+ 
Sbjct: 16  ETYEVYRSKGGYRAVEKALKTMSPDDVMEEVKKSGLRGRGGAGFPTGMKWSFLDR-KSNN 74

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLV NADESEPGT KDR +M   PH LIEG +++S+++G++  +IY+RGE+      L
Sbjct: 75  PRYLVCNADESEPGTFKDRYLMEKNPHILIEGLIVSSYSLGSNSTYIYIRGEYKWIVGIL 134

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ E   +G LG N    G+D++I V++G GAYICGEETAL+ESLEGK+G PR+KPPF
Sbjct: 135 EKAIAEAKNAGFLGKNILGSGFDLEIYVNNGGGAYICGEETALIESLEGKRGNPRIKPPF 194

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY CPT VNNVE++A V  I+  G   Y+  G   + GTKL S  GH+N P   E
Sbjct: 195 PAISGLYNCPTVVNNVETLATVTPIINMGGDEYAKLGIGKSTGTKLISACGHLNRPGVYE 254

Query: 256 ESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG------AIMDYDG 307
             + +  DE +  +++CGGIR G + L AVI GGSSVP LPA            +M Y+ 
Sbjct: 255 IDLGLPVDEFLNSDEYCGGIRKGHE-LKAVIAGGSSVPILPAELFMRNAAGEARLMSYES 313

Query: 308 LK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           L       G+ LG+   I MD +T I+   W L+ FY HESCGQC+PCREGTGWM +V+ 
Sbjct: 314 LSDGGFATGTMLGSGGFIAMDETTCIVHNTWTLARFYHHESCGQCSPCREGTGWMEKVLH 373

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           RL  G     +IDLL E++  IEG TIC LGDAAAWP+   I++FR   E  +  
Sbjct: 374 RLEFGHGHMHDIDLLVEIASKIEGNTICPLGDAAAWPVAAAIRHFRDEFEYHVTH 428


>gi|50083953|ref|YP_045463.1| NADH dehydrogenase I chain F [Acinetobacter sp. ADP1]
 gi|49529929|emb|CAG67641.1| NADH dehydrogenase I chain F [Acinetobacter sp. ADP1]
          Length = 443

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/402 (39%), Positives = 233/402 (57%), Gaps = 7/402 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +    K +      +++ VKA+ ++GRGGAGF  G+KWS M       P YL
Sbjct: 33  DDYEALDGYAGFKKAIGMTPAEVLDVVKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA++ + A   +I++RGE+I   + L  A+
Sbjct: 92  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAAYTLEATQGYIFIRGEYIEAAQYLNEAL 151

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 152 EQARAKGYLGDNILGTGWNFELYVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY G   G+  + GTK++  SG V +P   E  
Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE+H GG+R G   L A +PGG+S   L A  +    MD + + + GS LGT
Sbjct: 272 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLAAEHI-DLPMDSESIMKAGSRLGT 329

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++ A   L  F+  ESCG CTPCR+G  W ++ ++ L  G  +  +I  
Sbjct: 330 CLLMVVDETQCMVSATRNLEEFFARESCGWCTPCRDGLPWAVKALKALENGEGKMEDIQH 389

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L E+++ +  G+T CA    A  P+ G +K FR   E ++ +
Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKYFRSEFEAKVAK 431


>gi|217979755|ref|YP_002363902.1| NADH dehydrogenase (quinone) [Methylocella silvestris BL2]
 gi|217505131|gb|ACK52540.1| NADH dehydrogenase (quinone) [Methylocella silvestris BL2]
          Length = 516

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 151/413 (36%), Positives = 223/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +   SL D  +   W  + + +E G    I EV  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFARCGIIDPVSLVDYAAHDGWKGLARAIEVGPAETIAEVTKSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D   Y+V NADE + GT  DR +   +P  LIEG  IA  A+GA  
Sbjct: 158 PTGVKWKTVADAPAD-RRYIVCNADEGDSGTFADRMMFEGDPFALIEGMAIAGVAVGATK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y R E+    ++   A+    A+G LG N    G+  ++ +  GAGAY+CGEETALL
Sbjct: 217 GYVYCRSEYPHAVKTFNEAIVLARAAGYLGPNILGSGFAFELEMRVGAGAYVCGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEGK+G  R KPP PA+ GL+G PT +NNV S+  VP IL +G  +Y+ FG   +RGT
Sbjct: 277 DSLEGKRGIVRAKPPLPAHKGLFGRPTVINNVLSLVAVPHILAKGGEFYASFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V +    E +  +T  E++E   GG R G   + AV  GG     LP  Q  
Sbjct: 337 MPLQIAGNVRFGGLFETAFGLTLGEIVEDIGGGTRSGRP-IRAVQCGGPLGAYLPVSQ-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+   +  + +G   ++V D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPFDYEAFSKKDALIGHGGIVVFDDTVDMAQMARFAMEFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++R+  G+  +  I LL ++   ++  ++CALG  A +P+   +++F    
Sbjct: 455 ETVDRIRAGVKVQENIALLEDLCNTMKFGSLCALGGFAPYPVTSALRHFPEDF 507


>gi|323139483|ref|ZP_08074531.1| NADH dehydrogenase (quinone) [Methylocystis sp. ATCC 49242]
 gi|322395285|gb|EFX97838.1| NADH dehydrogenase (quinone) [Methylocystis sp. ATCC 49242]
          Length = 517

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 152/413 (36%), Positives = 224/413 (54%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  Q+RI F     +   S+++  + G    + +  + G    I EV  SGLRGRGGAGF
Sbjct: 98  MKRQNRITFARCGVIDPLSIAEYEAHGGGAGLARAFQIGPAATIEEVAKSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D   Y+VVNADE + GT  DR IM  +P +LIEG +I  +AI    
Sbjct: 158 PTGIKWKTVADAPAD-QRYVVVNADEGDSGTFADRMIMEGDPLSLIEGMIICGYAINGTK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+    +  QAA+D    +G LG N    G+  DI +  GAGAY+CGEET+LL
Sbjct: 217 GYVYLRSEYPVAAKVFQAAIDVARKAGWLGDNVRGSGFKFDIELRIGAGAYVCGEETSLL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+ GL+G PT VNNV S+A  P IL +GA  Y+  G   +RGT
Sbjct: 277 ESLEGKRGIVRAKPPLPAHEGLFGKPTVVNNVLSMATTPMILEKGAQHYADLGVGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V Y    E    I   E++    GG R G   + AV  GG     +P   + 
Sbjct: 337 MPLQIAGNVKYGGLFETDFGIPLGEIVNDIAGGTRSGRP-VRAVQVGGPLGAYVPVS-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+      S +G   +++ D + D+         F   ESCG+CTPCR G+   +
Sbjct: 395 DLPFDYEAFAAKDSLIGHGGLVIFDDTVDMAWMARFGMEFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++++ KG   +  I+LL ++   ++  ++CALG  A +P++  +++F    
Sbjct: 455 ETIDKIRKGENVEANIELLKDLCHTMKFGSLCALGGFAPYPVESALRHFPEDF 507


>gi|331017275|gb|EGH97331.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 452

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/406 (40%), Positives = 230/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQAHELFEDYAGGMRDGF-TLKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKILRAIENGHGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|148259851|ref|YP_001233978.1| NADH dehydrogenase (quinone) [Acidiphilium cryptum JF-5]
 gi|326403221|ref|YP_004283302.1| putative formate dehydrogenase beta subunit [Acidiphilium
           multivorum AIU301]
 gi|146401532|gb|ABQ30059.1| formate dehydrogenase beta subunit [Acidiphilium cryptum JF-5]
 gi|325050082|dbj|BAJ80420.1| putative formate dehydrogenase beta subunit [Acidiphilium
           multivorum AIU301]
          Length = 516

 Score =  442 bits (1136), Expect = e-122,   Method: Composition-based stats.
 Identities = 149/416 (35%), Positives = 215/416 (51%), Gaps = 5/416 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R      G+    SL D    G +  ++  L  G    +  VK SGLRGRGGAG
Sbjct: 96  FLARQTRFTFGRAGIIDPLSLEDYRHHGGYKGLEAALSIGPAATVAAVKESGLRGRGGAG 155

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +  +D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA 
Sbjct: 156 FPTGIKWETVARAPAD-RKYVVCNADEGDSGTFADRLIMEADPFMLIEGMTIAGVAVGAT 214

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+R E+      ++ A++    +G LG       +D D+ V  GAGAY+CGEET+L
Sbjct: 215 KGYVYIRSEYPLAIRMMRRAIEIAERAGYLGKGINGSAHDFDLEVRVGAGAYVCGEETSL 274

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+GQ R KPP PA  GL+G PT +NN  S+A VP IL  GA  Y+  G   +RG
Sbjct: 275 LESLEGKRGQVRPKPPLPAIEGLFGRPTIINNTISLASVPFILAEGAKRYAEMGYGRSRG 334

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G+V +    E +  +T  EL+    GG   G   + AV  GG      P   M
Sbjct: 335 TMPVQLAGNVKHGGLFECAFGVTLGELVNDIGGGTASGRP-VKAVQAGGPLGAYFPVS-M 392

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+   +    +G   ++V D + D+ +       F   ESCG+CTPCR G+   
Sbjct: 393 FDTPYDYEAFAKRDGLIGHGGLVVFDDTADMAQMARFAMEFCALESCGKCTPCRIGSTRG 452

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +   +R+  GI  +  + L+ ++ + ++  ++CALG    +P+   I +F      
Sbjct: 453 VETFDRIRAGIEPETNLALVRDLCETMKFGSLCALGGFTPYPVLSAINHFPEEFRA 508


>gi|226944922|ref|YP_002799995.1| NADH-quinone oxidoreductase, F subunit [Azotobacter vinelandii DJ]
 gi|226719849|gb|ACO79020.1| NADH-quinone oxidoreductase, F subunit [Azotobacter vinelandii DJ]
          Length = 449

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 162/407 (39%), Positives = 231/407 (56%), Gaps = 7/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +   +  +    K L E     I+  VK SGL+GRGGAGF+TG+KW  MP   S
Sbjct: 30  EPVWLDEYQQKNGYAAARKALAELSPADIVAIVKDSGLKGRGGAGFATGIKWGLMPADDS 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH LIEG +I++ A+ A+  +I++RGE+I    
Sbjct: 90  IDIRYLLCNADEMEPNTWKDRLLMEQLPHQLIEGMLISARALKAYRGYIFLRGEYIDAAR 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+ E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIAEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE+++ VP I+  G  WY    R  +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLSNVPAIVGNGVDWYKSLARPGSEDMGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  EL E + GG+R G+  L     GG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGITARELFEDYAGGMRDGY-RLKCWQSGGAGTGFLLPEHL-DAQMYAGGIGKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 328 GTRMGTGLALAVDDSINMVSLLRNLEEFFARESCGWCTPCRDGLPWSVKLLSALERGEGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             +++ L ++ + +  G+T CA    A  P+   +K FR   E  + 
Sbjct: 388 PGDLETLEQLVRFLGPGKTFCAHAPGAVEPLGSALKYFRQEFEAGVR 434


>gi|293607184|ref|ZP_06689526.1| NADH dehydrogenase (quinone) [Achromobacter piechaudii ATCC 43553]
 gi|292814518|gb|EFF73657.1| NADH dehydrogenase (quinone) [Achromobacter piechaudii ATCC 43553]
          Length = 530

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 153/417 (36%), Positives = 229/417 (54%), Gaps = 9/417 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G    + + L      II+E+  SGLRGRGGA F
Sbjct: 105 LKQQERLTFARVGVIDPLSLQDYAAHGGLAGLKRALAMDPAHIIDEMVTSGLRGRGGAAF 164

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +     +   Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 165 PTGIKWKTVAGTPGE-QKYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 223

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+    E+L+AA+    A G LG++    G   D+ V  GAGAYICGEET+LL
Sbjct: 224 GYIYVRSEYPHAIETLEAAIVRARAVGWLGADVHGSGRRFDLEVRKGAGAYICGEETSLL 283

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +GA++Y  +G   + GT
Sbjct: 284 ESLEGKRGVVRAKPPLPAISGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 343

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE++  ++  EL+    GG   G   L AV  GG     LP  Q  
Sbjct: 344 LPFQLAGNVKQGGLVEKAFGLSLRELLYDFGGGSATGRP-LRAVQVGGPLGAYLPESQ-W 401

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + +G   ++  D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 402 DVPLDYEAYIQISAMIGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 461

Query: 360 RVMERLVKGI----AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++++         +++++ LL ++   + G ++CALG  A +P+   + +F    
Sbjct: 462 ETIDKIAASGANPAQREQQVHLLRDLCDTMMGGSLCALGGMAPYPVLSALNHFPQDF 518


>gi|296124095|ref|YP_003631873.1| NADH-quinone oxidoreductase, F subunit [Planctomyces limnophilus
           DSM 3776]
 gi|296016435|gb|ADG69674.1| NADH-quinone oxidoreductase, F subunit [Planctomyces limnophilus
           DSM 3776]
          Length = 443

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 183/431 (42%), Positives = 261/431 (60%), Gaps = 17/431 (3%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           M T +  +   ++  Q  +L   ++ G +++  K L      +   VK SGLRGRGGAGF
Sbjct: 1   MSTYEPVLLARIHKEQSHTLDSYLADGGYESFKKALGMTPVEVTTLVKDSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+F+PK       YL VN DESEPGT  +R ++  +PH ++EG  I+ +AI ++ 
Sbjct: 61  PTGLKWTFLPKDHPGPI-YLAVNGDESEPGTFNNRILLEKDPHQVLEGIAISCYAIRSNT 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
           A++Y+R E+     +LQ AV ECY  G+ G N    G+D+D+ +H GA AYICGEET L+
Sbjct: 120 AYLYLRYEYGAAWRALQKAVAECYERGIFGKNVFGSGFDLDVRLHRGAAAYICGEETGLI 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE----- 234
           ESLEGK+  PR+KPPFPA  GL+  PT VNN+E++A V  IL+RG  W+   G       
Sbjct: 180 ESLEGKRAWPRIKPPFPAIEGLFRKPTIVNNIETMACVTQILKRGIDWFKSIGVPPDPNN 239

Query: 235 ----NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
                + G KL+ +SGHVN P   E  + IT  +LIE++ G    G   + AV+PGG S+
Sbjct: 240 PRDAGSYGPKLYCLSGHVNKPGCYEVPLGITARQLIEEYGG-GVPGGRGIKAVVPGGISM 298

Query: 291 PCLPAGQMRGAIMDYDGLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
             L   ++    +D++G  ++G  GLGTAAV+V+D  T ++  ++  + F+ HESCGQCT
Sbjct: 299 GFLAPSEL-DTPLDFNGPGKVGCLGLGTAAVVVIDDQTSMVDVVYNTARFFAHESCGQCT 357

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVS---KNIEGRTICALGDAAAWPIQGLIK 406
           PCREGT WM R++ R+  G  +  ++DLL EVS     + G TIC L D A WP++  I+
Sbjct: 358 PCREGTNWMQRILHRIRSGQGRMEDLDLLLEVSGGIGMMPGTTICGLADGAGWPVKNAIR 417

Query: 407 NFRPLIEERID 417
            FR   EE I 
Sbjct: 418 KFRSEFEEYIQ 428


>gi|262369337|ref|ZP_06062665.1| NADH dehydrogenase subunit I F [Acinetobacter johnsonii SH046]
 gi|262315405|gb|EEY96444.1| NADH dehydrogenase subunit I F [Acinetobacter johnsonii SH046]
          Length = 443

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 160/400 (40%), Positives = 233/400 (58%), Gaps = 6/400 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +  + K +      ++  +KA+ ++GRGGAGF  G+KWS M    +  P YL
Sbjct: 33  DDYEALEGYAGLKKAITMPPKDVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYL 92

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA++ + A   +I++RGE+I     L  A+
Sbjct: 93  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAAYTLEATHGYIFIRGEYIEAAAYLNEAL 152

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 153 EQVRAKGYLGENILGTGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 212

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY G   G+  + GTK++  SG V +P   E  
Sbjct: 213 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 272

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE + GG+R G   L A +PGG+S   L A  +    MD + + + GS LGT
Sbjct: 273 FGTTAREVIEDYAGGMRDGLK-LKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGT 330

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++ A   L  F+  ESCG CTPCR+G  W ++ ++ L  G  +K +ID 
Sbjct: 331 CLLMVVDETQCMVSATRNLEEFFARESCGFCTPCRDGLPWAVKALKALEDGTGKKEDIDH 390

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           L E+++ +  G+T CA    A  P+ G +K FR   E ++
Sbjct: 391 LQELTRKLWIGKTFCAHAPGAMEPLMGALKYFRGEFEAKV 430


>gi|307328626|ref|ZP_07607799.1| NADH-quinone oxidoreductase, F subunit [Streptomyces violaceusniger
           Tu 4113]
 gi|306885738|gb|EFN16751.1| NADH-quinone oxidoreductase, F subunit [Streptomyces violaceusniger
           Tu 4113]
          Length = 460

 Score =  441 bits (1135), Expect = e-122,   Method: Composition-based stats.
 Identities = 199/418 (47%), Positives = 257/418 (61%), Gaps = 13/418 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L   +    ++ + K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    
Sbjct: 28  NSWALRTYLRHEGYEGMRKALAMDPDAVIALVKDAGLRGRGGAGFPTGMKWQFIPQ-GDG 86

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH+LIEG VIA  AI +  AFIY+RGE +     
Sbjct: 87  KPHYLVVNADESEPGTCKDIPLLYANPHSLIEGMVIACHAIRSEHAFIYLRGETVPVLRR 146

Query: 136 LQAAVDECYASGLLG----SNSKLGYD----VDIIVHHGAGAYICGEETALLESLEGKKG 187
           L  AV E Y +G LG       KLG D    +DI VH GAGAYICGEETALL+SLEG++G
Sbjct: 147 LHEAVREAYEAGYLGTAERRRDKLGVDGLPGLDITVHAGAGAYICGEETALLDSLEGRRG 206

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           QPRL+PPFPA  GLY CPT VNNVESIA VP IL +G  W+   G E + G  L+S+SGH
Sbjct: 207 QPRLRPPFPAVAGLYACPTVVNNVESIASVPAILNKGKEWFRSMGSEKSPGFTLYSLSGH 266

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V  P   E  + IT  +L++   G        L    PGGSS P L    +    +DY+G
Sbjct: 267 VANPGQFEGPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPLLTEEHL-DVPLDYEG 323

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           +   GS LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  L  
Sbjct: 324 VGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDLEA 383

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           G  +  ++D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 384 GKGRMDDLDKLADIADNINGKSFCALGDGAASPIFSSLKYFREEYEQHITGGG-CPFD 440


>gi|282891845|ref|ZP_06300325.1| hypothetical protein pah_c198o038 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498278|gb|EFB40617.1| hypothetical protein pah_c198o038 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 432

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 177/400 (44%), Positives = 241/400 (60%), Gaps = 6/400 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           +      G +  + K +     D +I+ VK S LRGRGGAGF TGMKW F+PK     P 
Sbjct: 19  IETYERNGGYQAIRKAIPHMQPDALIDLVKQSELRGRGGAGFLTGMKWGFVPKNPQ-IPK 77

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV N+DESEPGT KDR ++ ++PH +IEG ++AS+AIGA  AFIY RGEF      L+ 
Sbjct: 78  YLVCNSDESEPGTFKDRLLIENDPHQVIEGIILASYAIGAKLAFIYCRGEFYEGIRHLEK 137

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV +    G LG++       ++IIVH GAGAYI GEETALL SLEG +  PRLKPPFPA
Sbjct: 138 AVQDAKQKGYLGNSILGSQVSLEIIVHPGAGAYIAGEETALLNSLEGYRATPRLKPPFPA 197

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GLYG PT +NNVE+++ V  I+ RG  WY   G+  N GTK+F +SG V  P   E  
Sbjct: 198 VEGLYGKPTIINNVETLSNVVHIVNRGVEWYKSIGKPKNTGTKIFQVSGQVQKPGCFEFP 257

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +  +  E++E   G + G      A  PGGSS   L    +    MD++ L    S LGT
Sbjct: 258 LGTSLREVLEAAGGMLPG--RRFKACYPGGSSCALLTERDL-DITMDFEALAARKSALGT 314

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           A++IVMD + D++K   RL  FY++ESCG+CTPCREGT W+++++ER+  G     ++  
Sbjct: 315 ASIIVMDDTADMVKVAHRLMQFYQNESCGKCTPCREGTRWVVQMLERIEAGKGTIWDLKK 374

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + +V +++E  + C L   AA PI   ++ F+   E  I 
Sbjct: 375 IEQVCQHMEVESFCPLAVGAAPPIVSAMREFKNEFEVYIR 414


>gi|160936107|ref|ZP_02083480.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440917|gb|EDP18641.1| hypothetical protein CLOBOL_01003 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1033

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 158/424 (37%), Positives = 239/424 (56%), Gaps = 6/424 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R+   N   ++  SL   +SR  +  + + L E     ++ E+KA+GLRGRGGA
Sbjct: 131 FFKGQVRVALRNCGHMEYASLEAYISRDGYGALARALSEMTPAQVVEEMKAAGLRGRGGA 190

Query: 59  GFSTGMKWSFMPKVCS-DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GF TG+KW    K  S D   ++V NADE +PG   DR I+  +PH++IEG ++  +AIG
Sbjct: 191 GFPTGVKWEAGMKAVSEDGRKFMVCNADEGDPGAFMDRSILEGDPHSIIEGMMLGGYAIG 250

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   ++YVR E+    E L  A+D+   +G+LG N    G+  D+ +  GAGA++CGEET
Sbjct: 251 ASKGYVYVRAEYPIAVERLGNAIDQARKAGILGENVMGSGFSFDLEIRIGAGAFVCGEET 310

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           +LL S+EGK+G+PR KPPFP   GL+  PT +NNVE++A    I+  G+ WY GFG E +
Sbjct: 311 SLLASIEGKRGEPRQKPPFPFEKGLFESPTIINNVETLANAAPIILNGSQWYRGFGTEKS 370

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+F+++G +     +E  M     ++     GG   G     A+  GG S  CL   
Sbjct: 371 AGTKVFALAGDIVNAGIIEVPMGTILGDI-IYKIGGGIIGGKKFKAIQSGGPSGGCLTKT 429

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    +DY+ L  +G+ +G+  +IVM+  T ++        F   ESCG+C PCR GT 
Sbjct: 430 HL-NTPVDYESLSSLGAIMGSGGLIVMNEDTCMVDTARYFMDFICDESCGKCLPCRNGTR 488

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M+ ++ER+ +G  Q  +++LL E++  I+   +C LG  A  P+   +K FR   E  I
Sbjct: 489 RMLEILERITEGKGQPEDLELLEELAGTIQQTAMCGLGQTAPNPVLSTLKYFRSEYEAHI 548

Query: 417 DQYH 420
            + H
Sbjct: 549 YEKH 552


>gi|182677976|ref|YP_001832122.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633859|gb|ACB94633.1| NADH dehydrogenase (quinone) [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 516

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 156/413 (37%), Positives = 231/413 (55%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+   +SL D ++ G +  + + L+ G   +I EV  SGLRGRGGAGF
Sbjct: 99  LAKQQRLTFARCGIVDPRSLEDYLAHGGYRGLARALDLGPAAMIEEVVESGLRGRGGAGF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +       Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 159 PTGIKWRTVAQTKPG-QKYIVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGIAVGATK 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+     +++AA++    +  LGSN +   +  DI V  GAGAY+CGEETALL
Sbjct: 218 GYIYIRSEYPHAVHAMEAAIEAARRADYLGSNVAGSEWAFDIEVRVGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+VGL+GCPT +NNV S+A VP IL +GA  Y  +G   +RGT
Sbjct: 278 ESLEGKRGLVRAKPPLPAHVGLFGCPTVINNVMSLATVPFILAQGAKTYQDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V +   VE +  +T  EL+E   GG R G   + AV  GG      P   + 
Sbjct: 338 MPIQLAGNVKHGGLVEIAFGVTLGELVEGFGGGTRSGRP-VRAVQVGGPLGAYFPVD-LF 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   ++V D + D++K       F  HESCG+CTPCR G+    
Sbjct: 396 DTPFDYEAFAARDGLIGHGGIVVFDDTVDMLKQARFAMEFCAHESCGKCTPCRIGSTRGA 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++++  G+  +  + L+ ++ + ++  ++CALG    +P+   + +F+   
Sbjct: 456 ETLDKIAHGMEAEHNLALVKDLCETMKFGSLCALGGFTPYPVMSALTHFQDDF 508


>gi|184157033|ref|YP_001845372.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter baumannii ACICU]
 gi|260555654|ref|ZP_05827874.1| NADH oxidoreductase (quinone), F subunit protein [Acinetobacter
           baumannii ATCC 19606]
 gi|332872608|ref|ZP_08440576.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6014059]
 gi|183208627|gb|ACC56025.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter baumannii ACICU]
 gi|260410565|gb|EEX03863.1| NADH oxidoreductase (quinone), F subunit protein [Acinetobacter
           baumannii ATCC 19606]
 gi|322506932|gb|ADX02386.1| nuoF [Acinetobacter baumannii 1656-2]
 gi|323516799|gb|ADX91180.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter baumannii TCDC-AB0715]
 gi|332739137|gb|EGJ69996.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6014059]
          Length = 443

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/402 (40%), Positives = 233/402 (57%), Gaps = 7/402 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +    K L      ++  +KA+ ++GRGGAGF  G+KWS M       P YL
Sbjct: 33  DDYEALEGYAGFKKALGMKPAEVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 92  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 152 EQIRAKGYLGDNILGSGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY G   G+  + GTK++  SG V +P   E  
Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE+H GG+R G   L A +PGG+S   LPA  +    MD + + + GS LGT
Sbjct: 272 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGT 329

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++     L  F+  ESCG CTPCR+G  W ++ ++ L  G  +K +ID 
Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDH 389

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L E+++ +  G+T CA    A  P+ G +K+FR   E ++  
Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRSEFEAKVTD 431


>gi|51892729|ref|YP_075420.1| NADH dehydrogenase I subunit F [Symbiobacterium thermophilum IAM
           14863]
 gi|51856418|dbj|BAD40576.1| NADH dehydrogenase I subunit F [Symbiobacterium thermophilum IAM
           14863]
          Length = 425

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 181/426 (42%), Positives = 253/426 (59%), Gaps = 10/426 (2%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           M+  +  +   +  +   ++    ++G +  + K L      I+ EVK + LRGRGGAGF
Sbjct: 1   MIQFEPVLTKGIGKVDLTNIDVYEAQGGYQALRKALAMEPQAIVEEVKKANLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KWSF+P     RP YL VNADESEPGTC +R ++   PH LIEG +I ++A     
Sbjct: 61  PAGVKWSFLP--NDGRPRYLTVNADESEPGTCNNRTLIYANPHQLIEGILITAYANRITQ 118

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           +FIY+RGEF R  E L  A+++    G +G N    G+  +I VH GA AYICGEE+ALL
Sbjct: 119 SFIYIRGEFKRGAEILMKAIEDARRKGYVGQNILGTGFSQEITVHRGASAYICGEESALL 178

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GREN 235
            SLEG++G+PR+KPPFPA VGLYGCPT +NNVE+I+ VP I++ G  WY+          
Sbjct: 179 NSLEGRRGEPRVKPPFPAVVGLYGCPTIINNVETISNVPHIIKNGWEWYTKITANPDNPK 238

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           + G K+F++SG V  P   E  M +   ++IE   GG+R G   L AV PGGSS P L  
Sbjct: 239 SCGPKIFTVSGCVQRPGNYELPMGVKLRDVIE-IAGGLRPGRK-LKAVQPGGSSTPMLTP 296

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +    MD++ +   GS LGTAAVIV D + D++      + FY HESCGQCTPCREGT
Sbjct: 297 DHL-DVPMDFESVAAAGSLLGTAAVIVYDDTVDLVDVALYWARFYSHESCGQCTPCREGT 355

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            W+ RV  R+ +G   + ++ ++ ++   + G TIC L DAA      L+K F   ++  
Sbjct: 356 HWLERVFTRIKEGGGTEGDLKMIADMQTQMAGTTICVLSDAAVAFPASLLKLFPEELDRY 415

Query: 416 IDQYHR 421
           I++   
Sbjct: 416 INRVKE 421


>gi|81299090|ref|YP_399298.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942]
 gi|3947771|emb|CAA73873.1| hoxF [Synechococcus elongatus PCC 6301]
 gi|81167971|gb|ABB56311.1| NADH dehydrogenase (quinone) [Synechococcus elongatus PCC 7942]
          Length = 534

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 140/419 (33%), Positives = 238/419 (56%), Gaps = 9/419 (2%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGA 58
             + Q +I     G +    L   ++ G +  +   I +     ++  ++ SGLRGRGG 
Sbjct: 112 FFSQQLKIVNRHSGLINPDRLESYLAAGGYRALMHTIFDLTPTEVVEIIRLSGLRGRGGG 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+ SD   ++V N DE +PG   DR ++  +PH +IEG  IA++A+GA
Sbjct: 172 GYPTGLKWATVAKMPSD-RKFVVCNGDEGDPGAFMDRSVLESDPHQVIEGMAIAAYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
           +  ++YVR E+      L  A+ +    GLLG++     +  D+ V  GAGA++CGEETA
Sbjct: 231 NFGYLYVRAEYPLAIARLNQAIRQARRRGLLGNSVLDSRFSFDLEVRIGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S++G++G PR++PP+PA  GL+G PT +NNVE+ A +  I+ +GA W++  G   ++
Sbjct: 291 LIHSIQGERGVPRVRPPYPAESGLWGHPTLINNVETFANIAPIVEQGADWFAAIGTPTSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M I    +++    G+      + AV  GG S  C+P  Q
Sbjct: 351 GTKVFALTGKLRNNGLIEVPMGIPLRSIVD----GMGIPESPVKAVQTGGPSGGCIPLAQ 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L ++GS +G+  ++VMD +TD++        F + ESCG+C PCR GT  
Sbjct: 407 L-DTPVDYDSLIQLGSMMGSGGMVVMDENTDMVAIARFYMEFCRSESCGKCIPCRAGTVQ 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +  ++ +L  G     ++  L ++   ++  ++C LG +A  PI   ++ FR   E R+
Sbjct: 466 LHELLGKLSSGQGTAIDLQQLEDLCYLVKDTSLCGLGMSAPNPILSTLRWFRQEYESRL 524


>gi|169634177|ref|YP_001707913.1| NADH dehydrogenase I chain F [Acinetobacter baumannii SDF]
 gi|169797054|ref|YP_001714847.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AYE]
 gi|213156540|ref|YP_002318201.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AB0057]
 gi|215484515|ref|YP_002326750.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii
           AB307-0294]
 gi|301347790|ref|ZP_07228531.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii
           AB056]
 gi|301510625|ref|ZP_07235862.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii
           AB058]
 gi|301595910|ref|ZP_07240918.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii
           AB059]
 gi|332852143|ref|ZP_08433970.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013150]
 gi|332867542|ref|ZP_08437695.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013113]
 gi|169149981|emb|CAM87875.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AYE]
 gi|169152969|emb|CAP02015.1| NADH dehydrogenase I chain F [Acinetobacter baumannii]
 gi|213055700|gb|ACJ40602.1| NADH dehydrogenase I chain F [Acinetobacter baumannii AB0057]
 gi|213987937|gb|ACJ58236.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter baumannii
           AB307-0294]
 gi|332729515|gb|EGJ60854.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013150]
 gi|332733959|gb|EGJ65104.1| NADH oxidoreductase, F subunit [Acinetobacter baumannii 6013113]
          Length = 443

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/402 (40%), Positives = 234/402 (58%), Gaps = 7/402 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +    K L      ++  +KA+ ++GRGGAGF  G+KWS M       P YL
Sbjct: 33  DDYEALEGYAGFKKALGMKPAEVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 92  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG+N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 152 EQIRAKGYLGNNILGSGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY G   G+  + GTK++  SG V +P   E  
Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE+H GG+R G   L A +PGG+S   LPA  +    MD + + + GS LGT
Sbjct: 272 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGT 329

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++     L  F+  ESCG CTPCR+G  W ++ ++ L  G  +K +ID 
Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDH 389

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L E+++ +  G+T CA    A  P+ G +K+FR   E ++  
Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRSEFEAKVTD 431


>gi|271501264|ref|YP_003334289.1| NADH-quinone oxidoreductase subunit F [Dickeya dadantii Ech586]
 gi|270344819|gb|ACZ77584.1| NADH-quinone oxidoreductase, F subunit [Dickeya dadantii Ech586]
          Length = 449

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/409 (41%), Positives = 237/409 (57%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D ++  VK +GLRGRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDEYRSKNGYAGAKKALTGMAQDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE++    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAA 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G +G PT VNNVE++  VP I+  G  WY G   G+  + GTKL   SG V  P
Sbjct: 203 PFPASAGAWGKPTCVNNVETLCNVPAIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 321 GSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I + 
Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGIARQ 429


>gi|330954559|gb|EGH54819.1| NADH dehydrogenase I subunit F [Pseudomonas syringae Cit 7]
          Length = 440

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/406 (40%), Positives = 229/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG +G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGGWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q
Sbjct: 328 GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIENGQGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 PGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|226306209|ref|YP_002766169.1| NADH-quinone oxidoreductase chain F [Rhodococcus erythropolis PR4]
 gi|226185326|dbj|BAH33430.1| NADH-quinone oxidoreductase chain F [Rhodococcus erythropolis PR4]
          Length = 439

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 206/416 (49%), Positives = 266/416 (63%), Gaps = 10/416 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L   + R  +  + K L    D +I  VK +GLRGRGGAGF TG+KWSF+P+V  D
Sbjct: 15  NSWTLDSYLRRDGYQALRKALATPPDAVIETVKDAGLRGRGGAGFPTGLKWSFIPQVSED 74

Query: 76  RP-----HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           +P     HYLVVNADESEPGTCKD  +M   PHTL+EG +IA++AI A  AFIYVRGE +
Sbjct: 75  KPGDGKPHYLVVNADESEPGTCKDMPLMMATPHTLVEGVIIAAYAIRAAKAFIYVRGEVV 134

Query: 131 RERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
                LQ AV E YA+G LG N    G+D+D++VH GAGAYICGEETALL+SLEG++GQP
Sbjct: 135 PVLRRLQTAVAEAYAAGYLGRNVLGSGFDLDLVVHAGAGAYICGEETALLDSLEGRRGQP 194

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           RL+PPFPA  GLY CPT VNNVESIA VP+I+  G  W+   G E + G  L+S+SGHV 
Sbjct: 195 RLRPPFPAVAGLYACPTVVNNVESIASVPSIVLGGPEWFRSMGSEKSPGFTLYSLSGHVT 254

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P   E  + IT  EL+E + GG+R G   L    PGGSS P      +    +DY+G+ 
Sbjct: 255 TPGQYEAELGITLRELLE-YAGGVRAG-HTLKFWTPGGSSTPIFTDEHL-DVPLDYEGVG 311

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
             GS LGT A+ + D +T I++A+ R + FY HESCG+CTPCREGT W+++++ RL  G 
Sbjct: 312 AAGSMLGTKALQIFDETTCIVRAVLRWTEFYAHESCGKCTPCREGTYWLVQILRRLEGGT 371

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             + ++  L ++S  I G++ CALGD A  PI   +K FR       D    C F 
Sbjct: 372 GTEADLTKLLDISDTILGKSFCALGDGATSPIMSSLKYFREEYVAHFDGNG-CPFD 426


>gi|239501290|ref|ZP_04660600.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter baumannii AB900]
          Length = 443

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/402 (40%), Positives = 233/402 (57%), Gaps = 7/402 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  S   +    K L      ++  +KA+ ++GRGGAGF  G+KWS M       P YL
Sbjct: 33  DDYESLEGYAGFKKALGMKPAEVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 92  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 152 EQIRAKGYLGDNILGSGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY G   G+  + GTK++  SG V +P   E  
Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE+H GG+R G   L A +PGG+S   LPA  +    MD + + + GS LGT
Sbjct: 272 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGT 329

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++     L  F+  ESCG CTPCR+G  W ++ ++ L  G  +K +ID 
Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDH 389

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L E+++ +  G+T CA    A  P+ G +K+FR   E ++  
Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRSEFEAKVTD 431


>gi|187736101|ref|YP_001878213.1| NADH dehydrogenase (quinone) [Akkermansia muciniphila ATCC BAA-835]
 gi|187426153|gb|ACD05432.1| NADH dehydrogenase (quinone) [Akkermansia muciniphila ATCC BAA-835]
          Length = 466

 Score =  440 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 201/440 (45%), Positives = 267/440 (60%), Gaps = 23/440 (5%)

Query: 3   TDQDRIFTNLYGLQGK--SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
            +  RI  N+   +G   S+   ++ G ++ + K L      +I+EVK SGLRGRGGAGF
Sbjct: 14  RETRRILKNVN-REGWNTSIDCYLADGGYEELKKALGMEPRAVIDEVKKSGLRGRGGAGF 72

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+F+P   + +P YLV N DESEPGT KDR I+  +PH LIEG VI+S+A+GAH 
Sbjct: 73  PTGVKWTFIP-PNNTKPVYLVCNCDESEPGTFKDRYIVHQDPHQLIEGMVISSYAVGAHQ 131

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+R EF    E +  A+ E    G LGSN    GY+++I +H GAGAYICGEETALL
Sbjct: 132 AYIYMREEFPIAAEIMLKALQEARERGFLGSNIQGSGYNLEIHLHRGAGAYICGEETALL 191

Query: 180 ESLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
            SLEG +  PR+KPP FPA +GLYGCPT VNNVES+  V  I+  G   YS  G + + G
Sbjct: 192 NSLEGDRPYPRIKPPYFPAAIGLYGCPTIVNNVESLCQVKHIMAMGGEAYSQEGAKRSPG 251

Query: 239 TKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG- 296
           T++  +SG V  P   E  S S+TF EL+   CGG R G     AVIPGGSS   +    
Sbjct: 252 TRIIGVSGDVKRPGFYEIVSGSMTFGELLYDVCGGPRDG-RQFKAVIPGGSSSKVMRTDA 310

Query: 297 --------------QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
                               +D D +   GS  G+ AVIVMD S  +  A+  ++ FY H
Sbjct: 311 EYKVQNPDGTMGKITFFDIPLDLDSIARHGSMSGSGAVIVMDDSRSMPWAMNNINRFYAH 370

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ESCGQCTPCREG  WMM++  R+++G A   ++DLL EV+  IEG+T+CA G+AA+WP Q
Sbjct: 371 ESCGQCTPCREGCPWMMKLSTRILEGKAAPSDVDLLIEVANQIEGKTVCAFGEAASWPTQ 430

Query: 403 GLIKNFRPLIEERIDQYHRC 422
            ++  F+       D ++ C
Sbjct: 431 AMVSKFKEEFVALTDPFNAC 450


>gi|251789018|ref|YP_003003739.1| NADH dehydrogenase I subunit F [Dickeya zeae Ech1591]
 gi|247537639|gb|ACT06260.1| NADH-quinone oxidoreductase, F subunit [Dickeya zeae Ech1591]
          Length = 449

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 169/409 (41%), Positives = 237/409 (57%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D ++  VK +GLRGRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLEEYRSKNGYAGAKKALTGMAQDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE++    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAA 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G +G PT VNNVE++  VP I+  G  WY G   G+  + GTKL   SG V  P
Sbjct: 203 PFPASAGAWGKPTCVNNVETLCNVPAIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 321 GSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I + 
Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGIARQ 429


>gi|187477322|ref|YP_785346.1| NAD-dependent formate dehydrogenase subunit beta [Bordetella avium
           197N]
 gi|115421908|emb|CAJ48428.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella avium
           197N]
          Length = 518

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 158/414 (38%), Positives = 228/414 (55%), Gaps = 6/414 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   S+ D  + G    +++ L    + II EV ASGLRGRGGA F
Sbjct: 101 LRHQERLTFVRVGVIDPLSIQDYAAHGGLAGLERALNLTPEQIIEEVAASGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S    Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWKTVHSAPS-ATKYIVCNADEGDSGTFADRLLMEGDPYALIEGMTIAGLAVGARY 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+      G LG +    G   D+ V  GAGAYICGEETALL
Sbjct: 220 GYIYVRSEYPHAIATLRAAIGRAREVGWLGEDIHGSGRCFDLEVREGAGAYICGEETALL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VPTIL RGA++Y  +G   + GT
Sbjct: 280 ESLEGKRGVVRAKPPLPAISGLFGQPTVINNVISLATVPTILARGAAFYRDYGVGRSHGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE++  ++  EL+    GG   G   L A   GG     LP  Q  
Sbjct: 340 LPFQLAGNIRQGGLVEKAFGLSLRELLYDFGGGSASGRP-LRAAQVGGPLGAYLPESQ-W 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    + + +G   V+  D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 398 DVPLDYEAYIAISAMVGHGGVVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457

Query: 360 RVMERLVK-GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++R++  G  ++ ++ LL ++   + G ++CALG  A +P+   + +F    
Sbjct: 458 ETLDRIMAGGEQREAQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHFPEDF 511


>gi|196228496|ref|ZP_03127363.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus
           Ellin428]
 gi|196227899|gb|EDY22402.1| NADH-quinone oxidoreductase, F subunit [Chthoniobacter flavus
           Ellin428]
          Length = 655

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 194/431 (45%), Positives = 264/431 (61%), Gaps = 18/431 (4%)

Query: 4   DQDRIFTNLYGLQGKS--LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
            + R+       +G +  L+  ++ G +  +++ L+   + I++EVK SGLRGRGGAGF 
Sbjct: 188 REKRVVFKNIDREGWTNDLNCYLNDGGYKQLEQALKMKPEEIVDEVKKSGLRGRGGAGFP 247

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G+KW F+ K    +P YL+ NADESEPGT KDR I+  +PH LIEG VI+ FA+GA+ A
Sbjct: 248 CGVKWGFI-KRGGPKPTYLICNADESEPGTFKDRYIIHQDPHQLIEGMVISCFAVGANLA 306

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF    + L+ A+ E  A   LG N    G+D +I VH GAGAYICGEET L+E
Sbjct: 307 YIYIRGEFPEGAQILEKALAEARAKNFLGKNILGSGFDCEIYVHRGAGAYICGEETGLIE 366

Query: 181 SLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASW-YSGFGRENNRG 238
           SLEGK+  PR+KPP FPA +GLY CPT VNNVE++  V  IL  G    Y+  G+ NN G
Sbjct: 367 SLEGKRAYPRIKPPYFPAVLGLYQCPTIVNNVETLCDVKHILAMGGGAGYAKLGKPNNTG 426

Query: 239 TKLFSISGHVNYPCTVEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG- 296
           T++  +SG V  P   E  +  +T  ELI   CGG+R     L AVIPGGSS   L AG 
Sbjct: 427 TRILCVSGDVKKPGYYEVEVGSLTMGELINDVCGGLR-DGRTLKAVIPGGSSAKVLKAGE 485

Query: 297 ---------QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347
                     +    MD+D L   GS  G+  VIVMD S D+++ +  ++ FY HESCGQ
Sbjct: 486 KYKLKDKEITLEEIPMDFDTLAAAGSMAGSGGVIVMDDSRDMVETLNNINEFYAHESCGQ 545

Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           CTPCREG  WM ++ +R+++G    ++ D+L  V+ NI G+TICA G+A +WP Q  +  
Sbjct: 546 CTPCREGALWMKKITDRIIEGGGTAKDPDVLKNVADNIAGKTICAFGEACSWPTQSFVLK 605

Query: 408 FRPLIEERIDQ 418
           FR     +  +
Sbjct: 606 FRDEFTAKAKK 616


>gi|242239964|ref|YP_002988145.1| NADH dehydrogenase I subunit F [Dickeya dadantii Ech703]
 gi|242132021|gb|ACS86323.1| NADH-quinone oxidoreductase, F subunit [Dickeya dadantii Ech703]
          Length = 449

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 173/409 (42%), Positives = 238/409 (58%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D ++  VK +GLRGRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDEYCSKNGYAGARKALTGMSQDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH LIEG VI ++A+ A+  +I++RGE+I    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLIEGMVIGAYALKAYRGYIFLRGEYIEAAA 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 NLRRAIEEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA  G +G PT VNNVE++  VP I+  G  WY G   G+  + GTKL   SG V  P
Sbjct: 203 PFPAMAGAWGKPTCVNNVETLCNVPAIVEHGIEWYQGLSAGKSKDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTDAHL-DLPMDFENIGKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 321 GSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I + 
Sbjct: 381 PGDIETLEQICRYLAPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGIARQ 429


>gi|330889656|gb|EGH22317.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. mori str.
           301020]
          Length = 453

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/407 (40%), Positives = 231/407 (56%), Gaps = 8/407 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQAKDGYAAARKALTQQSPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITF-DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
              E    +    EL E + GG+R G+  L    PGG+    L    +  A M   G+ +
Sbjct: 270 GLGELPFGVQAPRELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAK 327

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           +G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  + KG  
Sbjct: 328 VGTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEKGQG 387

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           Q  +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 QPGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 434


>gi|114566322|ref|YP_753476.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337257|gb|ABI68105.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 408

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/419 (40%), Positives = 235/419 (56%), Gaps = 13/419 (3%)

Query: 2   LTDQDRIFTNLY-GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + ++ RI       +      D +  G +  ++K        +I EVK SGLRGRGGAGF
Sbjct: 1   MAEEIRILLAHADQIDPAQAEDYIKVGGFKGLEKARGMTSKDLIEEVKKSGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           + GMKWSF+P        Y+V N DE EPGT KDR I       LIEG  I   AI A  
Sbjct: 61  NAGMKWSFVPPAE---VKYVVCNLDEGEPGTYKDRIICEKNAQALIEGMAICGVAINAKQ 117

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IY RGE+    + L+ A+      G LG         DI V  GAGAY+CGEETAL+E
Sbjct: 118 GYIYCRGEYPFVVDLLRKAIQSAKDVGALGE-------FDIEVRMGAGAYVCGEETALIE 170

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG +G+PR KPPFP   GL+G PT VNNVE+ A +P IL  GA W++  G     GTK
Sbjct: 171 SIEGHRGEPRFKPPFPGVAGLWGVPTVVNNVETFACLPYILTNGADWFASIGAPKYPGTK 230

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           + +++G VN P   E   +    ++I K  GGI+ G     AV  GG+S   +P   +  
Sbjct: 231 VLTLTGDVNNPTYFEVPTNYILSDVIYKLGGGIKNGRK-FKAVQVGGTSGAFIPEQNL-N 288

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+D +  +G+ LG+ AV+VMD + DI+  + R+S F++HESCG+C PCREGT     
Sbjct: 289 TSIDFDSMSAIGAALGSGAVLVMDETRDIVDIVTRISKFFEHESCGKCNPCREGTFRCRE 348

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +ME++  G A + +ID L  +++ ++   +C LG AA  PI   I++F      ++ QY
Sbjct: 349 IMEKINSGRATEADIDNLLLLARVMKRAALCGLGQAAPVPITSTIEHFGHEYRRKLLQY 407


>gi|294056100|ref|YP_003549758.1| NADH-quinone oxidoreductase, F subunit [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615433|gb|ADE55588.1| NADH-quinone oxidoreductase, F subunit [Coraliomargarita
           akajimensis DSM 45221]
          Length = 454

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 195/419 (46%), Positives = 259/419 (61%), Gaps = 20/419 (4%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            +   +  G ++++ K +    + I  EV  SG+RGRGGAGF  GMKW F+ +  S +P 
Sbjct: 21  DIDCYIKHGGYEDLKKAITMKPEDICQEVMESGVRGRGGAGFPAGMKWKFLDR-KSGKPI 79

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV N DESEPGT KDR I+  +PH LIEG +I+++AI A  AFIY+RGEF +    L+ 
Sbjct: 80  YLVCNCDESEPGTFKDRQIVHKDPHQLIEGMMISAYAIQAKLAFIYIRGEFFQGYRILEQ 139

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP-FP 196
           A++E  A  LLG N    GY  DIIVH GAGAYICGEET L+ES+EG +  PR+KPP FP
Sbjct: 140 AIEEARAKNLLGDNILGSGYSCDIIVHRGAGAYICGEETGLIESIEGNRANPRIKPPYFP 199

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A +GLY CPT VNNVE++  V  I+  G   ++  G   N GT+ + +SGHV  P   E 
Sbjct: 200 AALGLYQCPTIVNNVETLCDVKHIVAMGGKGFADIGTPGNTGTRTWCVSGHVMKPGYYEF 259

Query: 257 SM-SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ---------------MRG 300
           +   IT  ELI   CGG++ G   L AVIPGGSS   L A +               +  
Sbjct: 260 ACADITLGELIYDVCGGLKPGRK-LKAVIPGGSSAKVLRADERFKGKLKDGTEFDWGIED 318

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D L   GS  G+  VIVMD STDI++A+  ++ FY HESCGQCTPCREG  W+ +
Sbjct: 319 IPMDFDSLMACGSMSGSGGVIVMDDSTDIVEALANINYFYAHESCGQCTPCREGVPWLRK 378

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           V +R+V G A++ + DLL  ++  I GRTICA G+AA+WP+Q  I+ F+    E+  + 
Sbjct: 379 VTQRMVDGEAREEDADLLKSIADQIAGRTICAFGEAASWPVQSFIEKFKDEFVEKAREQ 437


>gi|284039947|ref|YP_003389877.1| NADH-quinone oxidoreductase, F subunit [Spirosoma linguale DSM 74]
 gi|283819240|gb|ADB41078.1| NADH-quinone oxidoreductase, F subunit [Spirosoma linguale DSM 74]
          Length = 446

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 203/415 (48%), Positives = 261/415 (62%), Gaps = 16/415 (3%)

Query: 18  KSLSDSMSRGHWDNVDK-ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           ++      +G +  V+K I     + I+ EVK +G+RGRGGAGF  GMKWSF+ K     
Sbjct: 16  ETFDVYRKQGGYTAVEKTIKTMTPEAIVEEVKKAGVRGRGGAGFPMGMKWSFLAK-PEGV 74

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLV NADESEPGT KD  +M++ PH LIEG +I+SFA+GA+ +FIYVRGE +     L
Sbjct: 75  PRYLVCNADESEPGTFKDHYLMKNIPHLLIEGMIISSFALGANKSFIYVRGELMYVIHIL 134

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+ E  A G LG N    GYD++++V  G GAYICGEETALLESLEGK+G PR KPPF
Sbjct: 135 EKAIAEATAKGFLGKNIMGSGYDLELVVQPGGGAYICGEETALLESLEGKRGNPRNKPPF 194

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GLY  PT VNNVESIA  P I+  G   Y+G G   + GTKL S SGH+N P   E
Sbjct: 195 PAVKGLYQSPTVVNNVESIATTPWIVNNGGDAYAGVGIGRSTGTKLISASGHINKPGVYE 254

Query: 256 ESMSITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA------IMDYDG 307
             + +  ++ I   + CGGIR       A++ GGSSVP LPA            +M Y+ 
Sbjct: 255 IELGVPVEDFIYADEWCGGIR-PGHKFKALVAGGSSVPILPANLALTLANGEKRLMSYES 313

Query: 308 LK----EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           L       G+ LG+   IV D ++ I++  W  S FY HESCGQC+PCREGTGWM +V+ 
Sbjct: 314 LSDGGFATGTMLGSGGFIVFDETSCIVRNTWNFSRFYHHESCGQCSPCREGTGWMEKVLH 373

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           R+  G   +++IDLL +V+K IEG TIC LGDAAAWP+   I++FR   +  ID 
Sbjct: 374 RIEHGHGHQQDIDLLVDVAKKIEGNTICPLGDAAAWPVASAIRHFRDEFQWHIDN 428


>gi|330503267|ref|YP_004380136.1| NADH-quinone oxidoreductase subunit F [Pseudomonas mendocina NK-01]
 gi|328917553|gb|AEB58384.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas mendocina
           NK-01]
          Length = 448

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/413 (39%), Positives = 230/413 (55%), Gaps = 7/413 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +   +  +    K L E  +  I+  VK SGL+GRGGAGF TG+KW  MP   S
Sbjct: 31  QPVWLEEYQQKNGYAAARKALTEMAQADIVQTVKESGLKGRGGAGFPTGVKWGLMPADES 90

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++    
Sbjct: 91  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAAA 150

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 151 NLNRAIDEAKAAGLLGKNIFGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 210

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+ +G  WY G  R  +   GTKL   SG V  P
Sbjct: 211 PFPAAVGVWGKPTCVNNVETLCNVPAIIGQGVDWYKGLARPGSEDHGTKLMGFSGKVKNP 270

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 271 GLWELPFGITARELFEDYAGGMRDGYK-LKCWQPGGAGTGFLLPEHLE-AQMYAGGIGKV 328

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L +    
Sbjct: 329 GTRMGTGLALAVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKILRALERKQGT 388

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             +I  L  +   +  G+T CA    A  P+   IK FR   E  + Q     
Sbjct: 389 AEDIQTLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFREEFEAGVAQVATTP 441


>gi|293609135|ref|ZP_06691438.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024]
 gi|292829708|gb|EFF88070.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024]
 gi|325121085|gb|ADY80608.1| NADH dehydrogenase I chain F [Acinetobacter calcoaceticus PHEA-2]
          Length = 443

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/402 (40%), Positives = 233/402 (57%), Gaps = 7/402 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +    K L      +++ +KA+ ++GRGGAGF  G+KWS M       P YL
Sbjct: 33  DDYEALEGYAGFKKALGMKPAEVLDVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 92  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ D+ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 152 EQIRAKGYLGENILGSGWNFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY G   G+  + GTK++  SG V +P   E  
Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE H GG+R G   L A +PGG+S   LPA  +    MD D + + GS LGT
Sbjct: 272 FGTTAREVIEDHAGGMREGLK-LKAWLPGGASTDFLPADTI-DLPMDADTIMKAGSRLGT 329

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++     L  F+  ESCG CTPCR+G  W ++ ++ L  G  +K +ID 
Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGFCTPCRDGLPWAVKALKALEAGEGKKEDIDH 389

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L E+++ +  G+T CA    A  P+ G +K+FR   E ++  
Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRGEFEAKVTN 431


>gi|311108352|ref|YP_003981205.1| NAD-dependent formate dehydrogenase subunit beta [Achromobacter
           xylosoxidans A8]
 gi|310763041|gb|ADP18490.1| NAD-dependent formate dehydrogenase beta subunit [Achromobacter
           xylosoxidans A8]
          Length = 523

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 153/414 (36%), Positives = 232/414 (56%), Gaps = 6/414 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      SL D  + G    + + L      I++E+ ASGLRGRGGA F
Sbjct: 101 LKQQERLTFARVGVTDPLSLQDYAAHGGLQGLQRALTMEPGQIVDEMVASGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +     D   Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWKTVAGTPGD-QKYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+ +  ++L+AA+    + G LG +    G   D+ V  GAGAYICGEET+LL
Sbjct: 220 GYIYVRSEYPQAIDTLEAAIARARSVGWLGDDVHGSGRRFDLEVRKGAGAYICGEETSLL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +GA++Y  +G   + GT
Sbjct: 280 ESLEGKRGVVRAKPPLPAISGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE++  ++  +L+    GG   G   L AV  GG     LP  Q  
Sbjct: 340 LPFQLAGNLKHGGLVEKAFGLSLRDLLYGFGGGSASGRP-LRAVQVGGPLGAYLPESQ-W 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + +G   ++  D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 398 DVPLDYEAYIQISAMVGHGGLVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457

Query: 360 RVMERLVKGIA-QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++++V G   +++++ LL ++   + G ++CALG  A +P+   + +F    
Sbjct: 458 ETIDKIVAGGPGREQQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHFPQDF 511


>gi|256422831|ref|YP_003123484.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM
           2588]
 gi|256037739|gb|ACU61283.1| NADH-quinone oxidoreductase, F subunit [Chitinophaga pinensis DSM
           2588]
          Length = 426

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 165/430 (38%), Positives = 252/430 (58%), Gaps = 9/430 (2%)

Query: 1   MLTDQDRIFTNLYGLQGK-SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
           M+T++  +  N+Y  +   +L +    G +  + K+        +   V+ S L+GRGGA
Sbjct: 1   MMTERP-LTRNIYPDRPPMNLKEYEKTGGYAALRKVCSTMDPAALQKLVQDSNLKGRGGA 59

Query: 59  GFSTGMKWSFMP-KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
           GFSTGMKWS +P    +  P YL+ NADE EPGT KDR ++   PH LIEG ++A++AI 
Sbjct: 60  GFSTGMKWSLIPMDDKATHPKYLIANADEMEPGTFKDRLLLEGNPHQLIEGMILAAYAIQ 119

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A  A++++R  +      ++ ++ E Y +G LG++    G+ +++ +H G G Y+CGEET
Sbjct: 120 ADIAYVFLRWAYHEAATLIRKSIQEAYDAGYLGTDILGSGFHLEMYLHTGVGRYMCGEET 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL +LEGK+  PR KPPFP   GL+G PT VNNVE++  VP I+  G +W+ G    ++
Sbjct: 180 ALLNALEGKRATPRAKPPFPQISGLFGKPTIVNNVETLCCVPHIVNNGVAWFKGLSYSDD 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK++ +SG V  P   E  M +T  ELIE+H GG++ G++ L  V+PGG+S   L   
Sbjct: 240 GGTKVYGVSGKVKRPGAWELPMGVTMRELIEEHAGGMKAGYE-LKGVLPGGASTDFLTTQ 298

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    MDY  +   GS LGT  +IV+D  T  +  +  L  F+  ESCG CTPCREG  
Sbjct: 299 HL-DIKMDYKSVAAAGSRLGTGTMIVLDSGTCPVGFVHNLQHFFAQESCGWCTPCREGLP 357

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           W+ +++  L KG  +  +I+LL   ++ +  G T CAL   A  P+Q  +K F    E+ 
Sbjct: 358 WVEKILLALEKGDGKPEDIELLQMHTQFLGPGNTFCALAPGAMEPLQSALKYFMDDFEKH 417

Query: 416 IDQYHRCNFQ 425
           + ++ +C + 
Sbjct: 418 V-EHKKCPYN 426


>gi|317404656|gb|EFV85052.1| NAD-dependent formate dehydrogenase beta subunit [Achromobacter
           xylosoxidans C54]
          Length = 523

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 150/414 (36%), Positives = 228/414 (55%), Gaps = 6/414 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G    + + L      I+ E+  SGLRGRGGA F
Sbjct: 101 LKQQERLTFARVGVIDPLSLQDYAAHGGLQGLKRALAMEPAAIVEEMVTSGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D   Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWKTVLGSPAD-RKYIVCNADEGDSGTFADRLLMEGDPYVLIEGMTIAGLAVGATY 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA++     G LG +    G   D+ V  GAGAYICGEET+LL
Sbjct: 220 GYIYVRSEYPHAIATLEAAIERARGVGWLGDDVHGSGRRFDLEVRKGAGAYICGEETSLL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +GA++Y  +G   + GT
Sbjct: 280 ESIEGKRGVVRAKPPLPAIAGLFGKPTVINNVISLATVPIILAKGAAYYRDYGVGRSHGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE++  ++  +L+    GG   G   L AV  GG     LP  Q  
Sbjct: 340 LPFQLAGNLKQGGLVEKAFGLSLRDLLYTFGGGSASGRP-LRAVQVGGPLGAYLPESQ-W 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + +G   ++  D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 398 DVPLDYEAYVQISAMIGHGGLVAFDDSVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 457

Query: 360 RVMERLVKGIA-QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++++  G   +++++ LL ++   + G ++CALG  A +P+   + +F    
Sbjct: 458 ETIDKITAGGPGREQQVHLLRDLCDTMLGGSLCALGGMAPYPVLSALNHFPQDF 511


>gi|269837267|ref|YP_003319495.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745]
 gi|269786530|gb|ACZ38673.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745]
          Length = 575

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 151/426 (35%), Positives = 229/426 (53%), Gaps = 7/426 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
            L  Q R+    +G+   +S+ D ++RG +    K + +   + ++NEVK S +RGRGGA
Sbjct: 136 FLAGQRRVLMADWGIIDPESIEDYIARGGYQAWIKAIFDMTPEEVVNEVKISNVRGRGGA 195

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF  G+KW    +  +  P Y++ N+ E EP   KDR ++   PH ++EG +I  +A+  
Sbjct: 196 GFPAGIKWESGRRTQA-WPKYVIANSHEGEPNVFKDRRLIESNPHLVLEGIMIGCYALET 254

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              + YV GE     E  + AVD+ Y  GLLG N    G    I V  G GAYICGE +A
Sbjct: 255 PHGYNYVGGEHKLAIERFRKAVDQAYELGLLGDNVLGSGVSCHIRVRTGGGAYICGEGSA 314

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+ G++GQPR KPP     G++  PT +NN E+ A +P I+R G +WY+  G E + 
Sbjct: 315 LMYSVMGQRGQPRTKPPRSVEEGVWKRPTVLNNTETFANIPGIIRNGGAWYAAMGTEKST 374

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL ++ G V     VE  M +   E+I    GG+R G+     V  GG S   L   Q
Sbjct: 375 GTKLITMQGPVQRIGVVEIEMGMPMREVIFGLFGGMREGY-VFKGVQTGGVSAGPLREDQ 433

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +D+D L  +G  LG+   +V D+S   +     L  F ++ESC +C PCR G   
Sbjct: 434 L-DVPVDFDSLTPLGGMLGSGGFVVFDQSVCAVDFARYLQEFNRYESCAKCVPCRLGNPA 492

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++ ++ER+  G A++ ++ L+ E S+ I   ++C LG  A  P  G+I+ F       I+
Sbjct: 493 LVEIIERIRLGQARQGDLALIEETSRPIIDLSLCGLGQVAPMPTLGMIRAFPEDFAAHIE 552

Query: 418 QYHRCN 423
           + HRC 
Sbjct: 553 E-HRCP 557


>gi|296130546|ref|YP_003637796.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas flavigena DSM
           20109]
 gi|296022361|gb|ADG75597.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas flavigena DSM
           20109]
          Length = 444

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 199/402 (49%), Positives = 247/402 (61%), Gaps = 5/402 (1%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
             +   L+   + G +  + K L      ++  VK SGLRGRGGAGF TGMKW F+P   
Sbjct: 14  ADRSWKLARYEADGGYRGLRKALTMAPADVVTTVKDSGLRGRGGAGFPTGMKWGFLP-AP 72

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
              P YLVVNADESEPGTCKD  +M   P  LIEG +I S+AIG H AFIYVRGE +   
Sbjct: 73  DGGPRYLVVNADESEPGTCKDIPLMMASPQELIEGVIITSYAIGCHHAFIYVRGEVVHVY 132

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             L  AV E   +G LG++    G+D++I VH GAGAYICGEETALL+SLEG +GQPRLK
Sbjct: 133 RRLLEAVREAREAGYLGTDILGSGFDLEITVHAGAGAYICGEETALLDSLEGLRGQPRLK 192

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GLY  PT VNNVES+A VP I+  GA W++  G E + G  LFS+SGHV  P 
Sbjct: 193 PPFPAVAGLYARPTVVNNVESVASVPGIIVGGADWFTSMGTERSAGHGLFSLSGHVTRPG 252

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  + IT  EL++   G        L    PGGSS P   A  +    +DY+ + + G
Sbjct: 253 QYEAPLGITLRELLDMAGG--VREGHELKFWTPGGSSTPIFTAEHL-DVPLDYESVGKAG 309

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT A+ + D +T ++KA+ R   FYKHESCG+CTPCREGT W+ +VM RL  G    
Sbjct: 310 SMLGTRALQIFDETTSVVKAVSRWIQFYKHESCGKCTPCREGTFWLAQVMARLEAGQGTS 369

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            +IDLL ++  NI GR  CALGD A  P+   I+ FR   E 
Sbjct: 370 ADIDLLLDLCDNILGRAFCALGDGATSPVTSAIQYFREEFEA 411


>gi|284042620|ref|YP_003392960.1| NADH dehydrogenase (quinone) [Conexibacter woesei DSM 14684]
 gi|283946841|gb|ADB49585.1| NADH dehydrogenase (quinone) [Conexibacter woesei DSM 14684]
          Length = 436

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 178/402 (44%), Positives = 254/402 (63%), Gaps = 5/402 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
            ++    +RG + +++K L    + ++  +  SGLRGRGGAGF+ G K SF+P+   D  
Sbjct: 16  DTIEVYKARGGYQSLEKALRMTPEEVLQNLLDSGLRGRGGAGFAMGKKVSFLPRGSMD-- 73

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLV NADESEPGT KDR++M+  PH LIEG +IA++A GA+ +FIY+RGE+  +   L+
Sbjct: 74  KYLVCNADESEPGTFKDRELMQKSPHMLIEGMIIAAYAAGANRSFIYIRGEYELQAMKLE 133

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           AA+ E   +G LG N     +   +I+H GAGAYICGEET LL+SLEGK+G PRLKPPFP
Sbjct: 134 AALHEAREAGYLGENILGSDHSQSLILHRGAGAYICGEETGLLDSLEGKRGNPRLKPPFP 193

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           AN GLY  PT +NNVE++A VP I++     Y+  G EN+ GTKL SISG+V  P   E 
Sbjct: 194 ANQGLYQGPTLINNVETLATVPHIIKMTGVEYAKLGVENSAGTKLISISGNVQRPGNYEI 253

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            + +   +++    GG   G   +    PGGSS P L    +     D+D + + GS LG
Sbjct: 254 ELGMKSYDIVYGLAGGPEPG-RRVKFWFPGGSSSPVLKPEDL-DLPYDFDSMAKAGSMLG 311

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           + A+IV+D S  ++    +L+ FY+HESCG+CTPCREGT W ++++ER+ KG     ++D
Sbjct: 312 SGAIIVVDDSVPVMDVALKLAKFYRHESCGKCTPCREGTNWTVKMLERIDKGEGTPMDLD 371

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++  V   I G  +C LGDA A P+  ++  FR   EE +++
Sbjct: 372 IIASVQDQIMGNCLCVLGDAMAMPLSSMVAKFRDEFEEYMEE 413


>gi|194374217|dbj|BAG57004.1| unnamed protein product [Homo sapiens]
 gi|221045632|dbj|BAH14493.1| unnamed protein product [Homo sapiens]
          Length = 363

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 232/352 (65%), Positives = 281/352 (79%), Gaps = 1/352 (0%)

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           M K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A+IY+RGE
Sbjct: 1   MNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGE 60

Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           F  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+ES+EGK+G
Sbjct: 61  FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH
Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           VN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P       +MD+D 
Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA 240

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +VM R V+
Sbjct: 241 LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVR 300

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 301 GDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 352


>gi|146305428|ref|YP_001185893.1| NADH dehydrogenase (quinone) [Pseudomonas mendocina ymp]
 gi|145573629|gb|ABP83161.1| formate dehydrogenase beta subunit [Pseudomonas mendocina ymp]
          Length = 523

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/416 (35%), Positives = 220/416 (52%), Gaps = 8/416 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    SL D ++   +  + + L    + I+ EV  SGLRGRGGA F
Sbjct: 101 LKRQERLTFARVGITDPLSLEDYIAHDGYRGLKRALGMTPEAIVAEVTESGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    ++   Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWRTVLGCQAE-QKYIVCNADEGDSGTFSDRMVMEDDPYVLIEGMTIAGLAVGATK 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+      L   +    A+G LG +    G    + +  GAGAYICGEETALL
Sbjct: 220 GYIYLRSEYPHAEAVLLETIARATAAGYLGDDVLGSGKAFHLELRRGAGAYICGEETALL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +G ++Y  +G   + GT
Sbjct: 280 ESIEGKRGTVRPKPPLPAIEGLFGKPTVINNVISLASVPIILDKGGAYYKDYGMGRSLGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++     +E++  IT  EL+ ++ GG   G   + AV  GG     LP  Q  
Sbjct: 340 LPIQLTGNIARGGLIEKAFGITLRELLYEYGGGSASGRP-IRAVQVGGPLGAYLPESQ-F 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ LG   ++V D + D+         F   ESCG+CTPCR G+    
Sbjct: 398 DTPLDYEAFAALGAVLGHGGIVVFDDTVDMADMARYAMEFCAVESCGKCTPCRIGSTRGE 457

Query: 360 RVMERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++ +++       Q   I+LL  +   + G ++CALG    +P+   I +F    
Sbjct: 458 ELLSQIIVARSEGPQPGRIELLKSLCDTMLGASLCALGGMTPYPVLSAINHFPEDF 513


>gi|330810467|ref|YP_004354929.1| NADH-quinone oxidoreductase subunit F [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|9719442|gb|AAF97802.1|AF281148_6 NADH dehydrogenase I subunit F [Pseudomonas fluorescens]
 gi|327378575|gb|AEA69925.1| NADH-quinone oxidoreductase subunit F [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 451

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/402 (40%), Positives = 230/402 (57%), Gaps = 7/402 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  ++  +    K   +  +D I+  VK SGL+GRGGAGF TG+KW  MPK  S    
Sbjct: 34  LDEYQAKNGYAAARKAFSDMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESINIR 93

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EP T KDR +M   PH LIEG +I++ A+  +  +I++RGE+    + L  
Sbjct: 94  YLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLNR 153

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV+E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 154 AVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 213

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVE 255
            VG++G PT VNNVE++  VP I+  G  WY    R+ +   GTKL   SG V  P   E
Sbjct: 214 AVGVWGKPTCVNNVETLCNVPAIIADGVDWYKSLARDGSEDMGTKLMGFSGKVKNPGLWE 273

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++G+ +
Sbjct: 274 LPFGVTGRELFEDYAGGMRDGYK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKVGTRM 331

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L  G  Q  +I
Sbjct: 332 GTGLAMAVDDSVNMVSLLRNMEEFFSRESCGFCTPCRDGLPWSVKLLRALENGEGQAGDI 391

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + L  +   +  G+T CA    A  P+   IK FRP  E  I
Sbjct: 392 ETLLGLVGFLGPGKTFCAHAPGAVEPLGSAIKYFRPEFEAGI 433


>gi|295798105|emb|CAX68924.1| NADH-quinone oxidoreductase F subunit (51 kDa) [uncultured
           bacterium]
          Length = 423

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 191/401 (47%), Positives = 260/401 (64%), Gaps = 5/401 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           LS  +  G + +  K+L E     +  EVKAS LRG GGAGFSTG KWSF+P+       
Sbjct: 17  LSGFLREGGYKSAAKVLKEMKPADVEAEVKASNLRGLGGAGFSTGTKWSFVPRNTGKPI- 75

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLVVNADE EPGT KD+ I+   PH LIEG +IAS+A+G H AFIY+RGE+ ++ ++++ 
Sbjct: 76  YLVVNADEGEPGTFKDKYIIERVPHLLIEGIIIASYAVGIHKAFIYIRGEYEKQYQAIKE 135

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+ E Y    LG+    + + +DI++H GAGAYICGEET+LLESLEGKKG PRLKPPFPA
Sbjct: 136 ALREAYDHKFLGTQIFGMDFQLDIVLHRGAGAYICGEETSLLESLEGKKGYPRLKPPFPA 195

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+GCPT +NNVE+++ +P+I+ +GASW++  G E + G +LF +SGHV  P   E  
Sbjct: 196 IVGLFGCPTVINNVETLSYLPSIIEKGASWFAAMGTEKSGGMRLFGVSGHVVKPGVYELP 255

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +  T  E+I  H GGI      L AV+PGG S   +   ++    MD+D LK  G+  G+
Sbjct: 256 IKTTLREIIYHHAGGIP-NGKKLKAVVPGGLSAAIMTPDEI-DVSMDFDALKAKGTMGGS 313

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             +IVMD +  +++A+     FY HESCGQC+PCREGTGW+ R++ R+V G  + ++ID 
Sbjct: 314 GGIIVMDETVSMVEALRITMQFYAHESCGQCSPCREGTGWIYRILNRIVAGKGKLQDIDN 373

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L ++   + G TICAL D A       +K FR   EE I  
Sbjct: 374 LLDIGAYLGGTTICALADGAQMTFLSYLKKFRSEFEEFIQN 414


>gi|87120636|ref|ZP_01076530.1| formate dehydrogenase, beta subunit [Marinomonas sp. MED121]
 gi|86164279|gb|EAQ65550.1| formate dehydrogenase, beta subunit [Marinomonas sp. MED121]
          Length = 527

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 152/414 (36%), Positives = 224/414 (54%), Gaps = 5/414 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +   SL+D  S   +D + + L+     +++EVK SGLRGRGGA F
Sbjct: 107 LKKQQRLTFARAGIIDPVSLTDYKSTHGYDGLVRALDMSSQALVDEVKDSGLRGRGGAAF 166

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +    Y++ NADE + GT  DR  M  +P  LIEG  IA  A+ A  
Sbjct: 167 PTGIKWQTVLNTPA-AQKYIICNADEGDSGTFADRLQMEADPFALIEGMTIAGLAVEATQ 225

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+   ++ L  A+     +G LG N    G    + V  GA AYICGEETAL+
Sbjct: 226 GYIYLREEYPHAKDILNEAIQVAEQNGYLGENILDSGKTFHLEVRIGAKAYICGEETALM 285

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S++ +  IL +G  +Y  FG   +RGT
Sbjct: 286 ESLEGKRGMVRPKPPLPAIEGLFGQPTVVNNVLSLSTIAIILAKGGKFYQEFGMGRSRGT 345

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ YP  VE +  IT  EL+    GG R G   + +V  GG     LP  Q  
Sbjct: 346 MPFQLAGNLKYPGLVETAFGITMKELLFDFGGGTRSGRP-MRSVQSGGPLGAYLPESQWH 404

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+ L   G+ LG   ++  D + D+++       F   ESCG+CTPCR G+   +
Sbjct: 405 -LEMDYEALSAEGAVLGHGGLVAFDDTVDMLEQARFSLEFCVEESCGKCTPCRIGSTRGV 463

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
            V++R+     +   ++LL ++   +   ++CA+G    +P+Q  +++F    +
Sbjct: 464 EVIDRIRADENRDDNLELLEDLCDTMVSGSLCAMGGMTPFPVQSALEHFGEDFQ 517


>gi|297203644|ref|ZP_06921041.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC
           29083]
 gi|197717222|gb|EDY61256.1| NADH oxidoreductase (quinone), F subunit [Streptomyces sviceus ATCC
           29083]
          Length = 533

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 152/413 (36%), Positives = 220/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      S  D  + G    +   LE     ++ EV ASGLRGRGGAGF
Sbjct: 105 LARQNRVTFARVGVTDPLSAEDYEAHGGLAGLRAALELAPADVVAEVTASGLRGRGGAGF 164

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +   C+D   ++  NADE + GT  DR +M  +P  LIEG  IA+ A+GA  
Sbjct: 165 PAGIKWKTVL-DCADELKFVCCNADEGDSGTFADRMVMEGDPFMLIEGMTIAAHAVGASE 223

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+     +++ A+      G LG        D D+ V  GAGAYICGEET++L
Sbjct: 224 GYLYIRSEYPDAVATMRRAIGVAREHGWLGKGILGSALDFDLHVRVGAGAYICGEETSML 283

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV ++A VP ++ +GA  Y   G E +RGT
Sbjct: 284 ESLEGKRGMVRAKPPIPAIEGLFGRPTVVNNVLTLATVPVVMAKGAQAYERLGVERSRGT 343

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           ++F + G++ +   VE +  IT  ELIE++ GG   G   +     GG     LP   M 
Sbjct: 344 QVFQLGGNIAHGGIVETAFGITLRELIEEYGGGTHSGRP-VRTAQVGGPLGAYLPES-MF 401

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+     G+ +G   V+V D S D+         F   ESCG+CTPCR G    +
Sbjct: 402 DLPMDYEAFAAAGAMVGHGGVVVFDDSVDMAAQARFAMEFCAEESCGKCTPCRVGAVRGV 461

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+V G  +   + LL ++   +   ++CA+G     P++  + +F    
Sbjct: 462 EVIDRIVAGTHRDENLALLEDLCDLMTEGSLCAMGGLTPLPVRSALTHFPDDF 514


>gi|114705203|ref|ZP_01438111.1| putative nad-dependent formate dehydrogenase beta subunit protein
           [Fulvimarina pelagi HTCC2506]
 gi|114539988|gb|EAU43108.1| putative nad-dependent formate dehydrogenase beta subunit protein
           [Fulvimarina pelagi HTCC2506]
          Length = 517

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 154/414 (37%), Positives = 217/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F         SL D  + G    + + +E G + I+ EVK SGLRGRGGAG
Sbjct: 97  FLKGQTRLTFKRCGVTDPLSLEDYEAHGGLLGLRRAIEMGSEAIVEEVKESGLRGRGGAG 156

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + K       Y+V NADE + GT  DR IM  +P  LIEG  IA+ A GA 
Sbjct: 157 FPTGIKWETVMKTEGP-KKYIVANADEGDSGTFADRMIMEGDPFCLIEGMTIAAVATGAT 215

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+R E+      ++ A+      G LG S     +  D+ V  GAGAY+CGEET+L
Sbjct: 216 KGYIYLRSEYPVAIRVMREAIKRAEDFGWLGISVLGSAHAFDLEVRVGAGAYVCGEETSL 275

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L+SLEGK+GQ R KPP PA  GL+G PT +NNV S+A  P IL +GA  Y  FG   +RG
Sbjct: 276 LDSLEGKRGQVRFKPPLPAIKGLFGRPTVINNVISLASTPEILAKGAKVYKDFGIGRSRG 335

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E    +T  E++E   GG       + AV  GG      P   +
Sbjct: 336 TIPLQIAGNVKHGGLYEVPFGLTLGEIVEGIAGGT-NSGKPVRAVQVGGPLGAYFPRS-L 393

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+   E    +G A +++ D + D++K       F   ESCG+CTPCR G    
Sbjct: 394 FDTPFDYEAFAEKKGLIGHAGIVIFDDTVDMMKQARFAFEFCAVESCGKCTPCRIGAVRG 453

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  ME+++ G      ++L+ ++   +E  ++CALG    +P+   I++F    
Sbjct: 454 LETMEKIIAGDNAAESLELVEDLCNTMEFGSLCALGGFTPYPVMSAIRHFPEDF 507


>gi|294649464|ref|ZP_06726888.1| NADH-quinone oxidoreductase subunit F [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824634|gb|EFF83413.1| NADH-quinone oxidoreductase subunit F [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 442

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 159/403 (39%), Positives = 229/403 (56%), Gaps = 6/403 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +    K L      ++  +KA+ ++GRGGAGF  G+KWS M    +  P YL
Sbjct: 33  DDYEALEGYAGFKKALSMPPKDVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYL 92

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 93  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEAL 152

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 153 EQIRAKGYLGENILGTGWNFEMHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 212

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY       +   GTK++  SG V +P   E  
Sbjct: 213 GAWGRPTIVNNVETYNNLPAIMLRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELP 272

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE H GG+R G   L A +PGG+S   L A  +    MD + + + GS LGT
Sbjct: 273 FGTTAREVIEDHAGGMRDGL-TLKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGT 330

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++ A   L  F+  ESCG CTPCR+G  W ++ ++ L  G  +  +I  
Sbjct: 331 CLLMVVDETQCMVSATRNLEEFFARESCGFCTPCRDGLPWAVKALKALENGEGKMEDIQH 390

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           L E++K +  G+T CA    A  P+ G +K FR   E +++ +
Sbjct: 391 LSELTKKLWIGKTFCAHAPGAMEPLMGALKYFRHEFEAKVNTH 433


>gi|325291004|ref|YP_004267185.1| NADH dehydrogenase subunit F [Syntrophobotulus glycolicus DSM 8271]
 gi|324966405|gb|ADY57184.1| NADH dehydrogenase subunit F [Syntrophobotulus glycolicus DSM 8271]
          Length = 427

 Score =  439 bits (1129), Expect = e-121,   Method: Composition-based stats.
 Identities = 150/411 (36%), Positives = 229/411 (55%), Gaps = 6/411 (1%)

Query: 7   RIFTNLYG-LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           +I ++ +G ++  S+ + ++ G ++ + K + +     I E+K + L GRGGA + TG+K
Sbjct: 5   KILSSRFGKIKPDSVEEYVANGGYEGLKKAITQQHLDTIEEIKKANLFGRGGAAYPTGIK 64

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           W     +      Y+V NADE EPGT KDR+IM  +P  LIEG  I ++  G+   FIY 
Sbjct: 65  WEQAYAIPG--TKYIVCNADEGEPGTIKDREIMSRDPLMLIEGMTIGAYLFGSSEGFIYC 122

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           RGE+ + ++ L++A+    A+G LG N    G + DI V  GAGAY+CGE TAL ES+EG
Sbjct: 123 RGEYGKIQKLLRSAIANAKAAGYLGDNILGTGLNFDIKVVSGAGAYVCGENTALAESIEG 182

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K G+PR KPP+  N GL   PT +NNVE+ A +P I++ G   +  +G E + GTKL  +
Sbjct: 183 KTGRPRRKPPYLKNAGLNLKPTVLNNVETYACIPYIVKEGGEKFLSYGTEFSGGTKLMCL 242

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
            G V      E     T  ELI+   GG+      L  V  GGSS  C P   M    + 
Sbjct: 243 IGDVKNRGVYEVPFGTTVRELIDNCGGGMA-DGKKLKFVHLGGSSGSCFPES-MLDTKIC 300

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           Y+ L++ G  LG+  V+V+     +++ +  +  F++ ESCG+CTPCREG   M+ ++E+
Sbjct: 301 YNDLRKAGISLGSGVVLVVSEDQSVVEYLKAVMEFFEEESCGKCTPCREGNQRMVEILEK 360

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           L +G     +I  L  +++ +   + C LG +A  P   LIK+F    +  
Sbjct: 361 LTEGKGTAEDIKRLKHLAQIMRDTSFCGLGQSAPVPALTLIKHFEDEFKAY 411


>gi|307131810|ref|YP_003883826.1| NADH:ubiquinone oxidoreductase subunit F [Dickeya dadantii 3937]
 gi|306529339|gb|ADM99269.1| NADH:ubiquinone oxidoreductase, chain F [Dickeya dadantii 3937]
          Length = 449

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 168/409 (41%), Positives = 237/409 (57%), Gaps = 7/409 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D ++  VK +GLRGRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDEYRSKNGYAGAQKALTGMAQDEVVTLVKDAGLRGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I ++A+ A+  +I++RGE++    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQMPHLLVEGMLIGAYALKAYRGYIFLRGEYVEAAA 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 NLRRAIAEATEAGLLGKNIMGTGFNFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G +G PT VNNVE++  VP I+  G  WY G   G+  + GTKL   SG V  P
Sbjct: 203 PFPASAGAWGKPTCVNNVETLCNVPAIIEHGVEWYQGLSAGKSKDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLTDAHL-DLPMDFENIGKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 321 GSRLGTALAMAVDNEINMVSLTRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I + 
Sbjct: 381 PGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFRDEFEAGIARQ 429


>gi|94265734|ref|ZP_01289471.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
 gi|93453747|gb|EAT04123.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
          Length = 562

 Score =  439 bits (1128), Expect = e-121,   Method: Composition-based stats.
 Identities = 144/423 (34%), Positives = 243/423 (57%), Gaps = 7/423 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGA 58
             + Q ++  + +  ++ + +   ++ G +  + D I  +    II+E+  SGLRGRGG 
Sbjct: 140 FFSRQRKVVLDRFEEMEPERIESYLAAGGYQALLDCIWHRQPAAIIDEISKSGLRGRGGG 199

Query: 59  GFSTGMKWSFMPKV--CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           G+  G+KW+ + K         Y++ NADE +PG   DR ++   PH ++EG  IA++A+
Sbjct: 200 GYPAGLKWATVAKAALPPGGRKYVICNADEGDPGAFMDRSVLESAPHRVLEGMAIAAYAV 259

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEE 175
           GA   ++YVR E+      L+ A+ +    GLLG       +D  + +  GAGA++CGEE
Sbjct: 260 GADFGYLYVRAEYPLAVARLKKAISQAEKLGLLGQRIGGSAFDFRVEIRLGAGAFVCGEE 319

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ S+EGK+GQPR +PP+PA  G+ GCPT +NNVE++A +  I+ RG +W++  G E 
Sbjct: 320 TALVASIEGKRGQPRPRPPYPAEYGIKGCPTLINNVETLANITAIINRGGAWFATLGSEQ 379

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           ++GTK+F+++G V     +E  M IT  E++E+  GG   G  ++ AV  GG S  C+PA
Sbjct: 380 SKGTKVFALAGKVVNTGLIEVPMGITLHEIVEEMGGGTPAGG-SIKAVQTGGPSGGCIPA 438

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
                  +DY+ L+  GS +G+  +I+MD  + ++        F   ESCG+C PCR GT
Sbjct: 439 AH-FQLPVDYESLQAEGSIMGSGGLIIMDEGSGMVDVARFFMEFCVDESCGKCVPCRVGT 497

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             ++ ++E++  G   + ++  L E+   ++  ++C LG +A  P+   +K FR   E  
Sbjct: 498 KQILLLLEKIGAGAGGQDDLARLQELCAMVQQGSLCGLGMSAPNPVLSTLKFFRHEYEAL 557

Query: 416 IDQ 418
           +++
Sbjct: 558 LEK 560


>gi|77459829|ref|YP_349336.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens Pf0-1]
 gi|77383832|gb|ABA75345.1| NADH dehydrogenase subunit F [Pseudomonas fluorescens Pf0-1]
          Length = 451

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 163/402 (40%), Positives = 231/402 (57%), Gaps = 7/402 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +  ++  +    K      +D I+  VK +GL+GRGGAGF TG+KW  MPK  S    
Sbjct: 34  LDEYQAKNGYAAARKAFADMDQDAIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDESINIR 93

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EP T KDR +M   PH LIEG +I++ A+  +  +I++RGE+    + L  
Sbjct: 94  YLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAKHLNR 153

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           AV+E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 154 AVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPA 213

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVE 255
            VG++G PT VNNVE++  VP I+  G  WY    R+ +   GTKL   SG V  P   E
Sbjct: 214 AVGVWGKPTCVNNVETLCNVPAIIADGVDWYKSLARDGSEDMGTKLMGFSGKVKNPGLWE 273

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               +T  EL E + GG+R G+  L A  PGG+    L    +  A M   G+ ++G+ +
Sbjct: 274 LPFGVTGRELFEDYAGGMRDGFK-LKAWQPGGAGTGFLLPEHL-DAQMYAGGIAKVGTRM 331

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  + +G  Q  +I
Sbjct: 332 GTGLAMAVDDSVNMVSLLRNMEQFFARESCGFCTPCRDGLPWSVKLLMAIEQGRGQPGDI 391

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + L  +   +  G+T CA    A  P+   IK FRP  E  I
Sbjct: 392 ETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRPEFEAGI 433


>gi|269218342|ref|ZP_06162196.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212201|gb|EEZ78541.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 442

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 188/400 (47%), Positives = 245/400 (61%), Gaps = 6/400 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             +L      G ++ + K    G   +   +K SGL GRGGAGF TG+KWSF+P      
Sbjct: 23  SWTLGAYRDAGGYEGLAKAWSYGPGELTQLIKDSGLAGRGGAGFPTGLKWSFLP-PPDGG 81

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YLVVNADESEPGTCKD   +   PH LIEG  I   A+G H  F+Y+RGE +     L
Sbjct: 82  PRYLVVNADESEPGTCKDVPALMGNPHALIEGMAICLLAVGGHHGFVYLRGEVVHVYRRL 141

Query: 137 QAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            AAV +   +GL+G        YD++I VH GAGAYICGEETALL+SLEG++GQPRLKPP
Sbjct: 142 MAAVRQAREAGLIGKAMGPDGDYDIEITVHAGAGAYICGEETALLDSLEGRRGQPRLKPP 201

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  GLY  PT +NNVE+I+ VP I+R G  W+   G E+ +G   FS+SGHV  P   
Sbjct: 202 FPAAEGLYARPTVINNVETISSVPGIVRNGVEWFHAMGTESAKGHGFFSLSGHVKNPGQY 261

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  + IT   L++   G        L     GGSS P     Q+    +DY+ ++E GS 
Sbjct: 262 EAPLGITARTLLDLAGG--IRPGHELKFWAVGGSSAPLFTPEQL-DVPLDYNSVREAGSM 318

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           L T A++V D +  +++ I R + FY+HESCG+CTPCREGT WM +V+ RL  G  +  +
Sbjct: 319 LATRAIMVFDETVSVVRVISRWTDFYQHESCGKCTPCREGTYWMRQVVHRLEAGRGRPGD 378

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +DLLYE++ NI GR+ CALGDAAA P++  I+ FR   E 
Sbjct: 379 VDLLYEIASNIAGRSFCALGDAAATPVKSGIELFREEFEA 418


>gi|226953548|ref|ZP_03824012.1| NADH dehydrogenase I subunit F [Acinetobacter sp. ATCC 27244]
 gi|226835726|gb|EEH68109.1| NADH dehydrogenase I subunit F [Acinetobacter sp. ATCC 27244]
          Length = 442

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 159/403 (39%), Positives = 228/403 (56%), Gaps = 6/403 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +    K L      ++  +KA+ ++GRGGAGF  G+KWS M    +  P YL
Sbjct: 33  DDYEALEGYAGFKKALSMPPKDVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDNSGPRYL 92

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 93  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEAL 152

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 153 EQIRAKGYLGENILGTGWNFEMHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 212

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY       +   GTK++  SG V +P   E  
Sbjct: 213 GAWGRPTIVNNVETYNNLPAIMLRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELP 272

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE H GG+R G   L A +PGG+S   L A  +    MD + + + GS LGT
Sbjct: 273 FGTTAREVIEDHAGGMRDGL-TLKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGT 330

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++ A   L  F+  ESCG CTPCR+G  W ++ ++ L  G  +  +I  
Sbjct: 331 CLLMVVDETQCMVSATRNLEEFFARESCGFCTPCRDGLPWAVKALKALENGEGKMEDIQH 390

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           L E++K +  G+T CA    A  P+ G +K FR   E ++  +
Sbjct: 391 LSELTKKLWIGKTFCAHAPGAMEPLMGALKYFRHEFEAKVSTH 433


>gi|227823604|ref|YP_002827577.1| NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium
           fredii NGR234]
 gi|227342606|gb|ACP26824.1| NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium
           fredii NGR234]
          Length = 518

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 152/414 (36%), Positives = 222/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+ F         SL D    G    ++K +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKNQTRLTFARCGVTDPLSLDDYRGHGGLRGLEKAVSMAPAAIVAEVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +       Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVLEAQ-GAQKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y R E+     ++ AA++   A+G+LG S     +  D+ V  GAGAY+CGEET+L
Sbjct: 217 KGYVYTRSEYPHAIAAMSAAIEIARAAGVLGTSVLGSAHAFDMEVRTGAGAYVCGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RG
Sbjct: 277 LNSLEGKRGLVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMDKGAAYYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E +  +T  E+++K  GG   G   + AV  GG      P   +
Sbjct: 337 TIPIQIAGNVKHGGLYETAFGLTLGEIVDKIGGGTASGRP-VKAVQVGGPLGAYFPRS-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEAFAAKDGLIGHAGLVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + V +R+  GI  ++  +LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VEVADRIAAGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVTSAMTHFPEDF 508


>gi|226327878|ref|ZP_03803396.1| hypothetical protein PROPEN_01759 [Proteus penneri ATCC 35198]
 gi|225203582|gb|EEG85936.1| hypothetical protein PROPEN_01759 [Proteus penneri ATCC 35198]
          Length = 404

 Score =  438 bits (1126), Expect = e-121,   Method: Composition-based stats.
 Identities = 162/385 (42%), Positives = 221/385 (57%), Gaps = 6/385 (1%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
                +  EVK +GL+GRGGAGFSTG+KWS MPK  S    Y++ NADE EPGT KDR +
Sbjct: 1   MSPTEVTTEVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYILCNADEMEPGTYKDRLL 60

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156
           M   PH LIEG +I + A+ A+  +I++RGE+I   + L+ A++E  A+G LG N    G
Sbjct: 61  MEELPHLLIEGMIIGAHALKAYRGYIFLRGEYIEAAKHLRHAIEEAKAAGFLGKNIFGSG 120

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA  G +G PT VNNVE++  
Sbjct: 121 IDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNNVETLCN 180

Query: 217 VPTILRRGASWYSGFGRENNR--GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           VP I+  G  WY G     +   GTKL   SG V +P   E     T  E++E + GG+R
Sbjct: 181 VPAIIEHGKDWYIGLSEGKSPDAGTKLMGFSGRVKFPGLWELPFGTTAREILEDYAGGMR 240

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
            G   L A  PGG+    L    +    MD+  + + GS LGTA  + +D   +++    
Sbjct: 241 DGLK-LKAWQPGGAGTDFLTEDHL-DLPMDFGTIAKAGSRLGTALAMAVDNEINMVSLTR 298

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICAL 393
            L  F+  ESCG CTPCR+G  W + ++  +  G  +  +I+ L  + +++  G T CA 
Sbjct: 299 NLEEFFARESCGWCTPCRDGLPWSVEILRAIENGKGRPGDIETLEHLCRSLSPGHTFCAH 358

Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQ 418
              A  P+Q  IK FR   E  I Q
Sbjct: 359 APGAVEPLQSAIKYFREEFEAGIIQ 383


>gi|330501361|ref|YP_004378230.1| NADH dehydrogenase [Pseudomonas mendocina NK-01]
 gi|328915647|gb|AEB56478.1| NADH dehydrogenase [Pseudomonas mendocina NK-01]
          Length = 523

 Score =  438 bits (1126), Expect = e-121,   Method: Composition-based stats.
 Identities = 148/416 (35%), Positives = 220/416 (52%), Gaps = 8/416 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    SL D ++   +  + + L    + I+ EV  SGLRGRGGA F
Sbjct: 101 LKRQERLTFARVGITDPLSLEDYIAHDGYRGLKRALGMTPEAIVAEVTESGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    ++   Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 161 PTGIKWRTVLGCQAE-QKYIVCNADEGDSGTFSDRMVMEDDPYVLIEGMTIAGLAVGATK 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+      L   +    A+G LG +    G    + +  GAGAYICGEETALL
Sbjct: 220 GYIYLRSEYPHAEAVLLETIARATAAGYLGDDVLGSGKAFHLELRRGAGAYICGEETALL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +G ++Y  +G   + GT
Sbjct: 280 ESIEGKRGTVRPKPPLPAIEGLFGKPTVINNVISLASVPIILDKGGAYYKDYGMGRSLGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++     +E++  IT  EL+ ++ GG   G   + AV  GG     LP  Q  
Sbjct: 340 LPIQLTGNIARGGLIEKAFGITLRELLYEYGGGSASGRP-IRAVQVGGPLGAYLPESQ-F 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ LG   ++V D + D+         F   ESCG+CTPCR G+    
Sbjct: 398 DTPLDYEAFAALGAVLGHGGIVVFDDTVDMADMARYAMEFCAVESCGKCTPCRIGSTRGE 457

Query: 360 RVMERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++ +++       Q   I+LL  +   + G ++CALG    +P+   I +F    
Sbjct: 458 ELLSQIIVARSEGPQPGRIELLKSLCDTMLGASLCALGGMTPYPVMSAINHFPEDF 513


>gi|262275220|ref|ZP_06053030.1| NAD-dependent formate dehydrogenase beta subunit [Grimontia
           hollisae CIP 101886]
 gi|262220465|gb|EEY71780.1| NAD-dependent formate dehydrogenase beta subunit [Grimontia
           hollisae CIP 101886]
          Length = 530

 Score =  438 bits (1126), Expect = e-121,   Method: Composition-based stats.
 Identities = 151/415 (36%), Positives = 229/415 (55%), Gaps = 7/415 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  QDR+ F  +  +    + D  S+G +D + + L      +++EVKASGLRGRGGA F
Sbjct: 106 LKRQDRLTFERVGVVDPLDVEDYCSKGGFDGLKRALTMTTQEMLDEVKASGLRGRGGAAF 165

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S    Y++ NADE + GT  DR +M  +P TLIEG +I + ++GA  
Sbjct: 166 PTGIKWQTVADQPSG-QKYVICNADEGDSGTFADRMLMEGDPLTLIEGMIICALSVGASQ 224

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y R E+    +    A++  YA+G LG +    G   D+ +  GAGAYICGEET+L+
Sbjct: 225 GYVYTRSEYPNACKIFTKAIENAYAAGYLGPDICGSGKHFDLELRMGAGAYICGEETSLM 284

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP I  +GA  Y  FG+  + GT
Sbjct: 285 ESLEGKRGLVRNKPPLPAIEGLFGRPTVINNVISLASVPIIFSKGADHYKDFGQGRSLGT 344

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++  P   E +  +T  EL+    GG + G   L AV  GG     + A +  
Sbjct: 345 MPIQLAGNIKRPGLFELAFGVTIRELLFDFGGGSKTGNP-LKAVQIGGPLGAYI-AEKDW 402

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ L   G+ LG   ++  D  TD+ +       F   ESCG+CTPCR G    +
Sbjct: 403 DTELDYEHLAARGAMLGHGGIVAFDEQTDMSQMARFAMEFCALESCGKCTPCRIGAVRGV 462

Query: 360 RVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+++L++  G  +     LL ++ + +E  ++CA+G    +P++  +K+F    
Sbjct: 463 EVIDQLLRTTGDEKSAHKALLDDLCETMEQGSLCAMGGMTPFPVKSALKHFPDDF 517


>gi|302037260|ref|YP_003797582.1| formate dehydrogenase subunit beta [Candidatus Nitrospira defluvii]
 gi|300605324|emb|CBK41657.1| Formate dehydrogenase, beta subunit [Candidatus Nitrospira
           defluvii]
          Length = 498

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/418 (35%), Positives = 225/418 (53%), Gaps = 7/418 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R  F N    +  +L +  +RG    ++  L  G D II E++ S LRGRGGA 
Sbjct: 86  FLAQQTRFTFANFGETEPLALDEYQARGGLSGLETALRIGPDAIIEELRVSQLRGRGGAA 145

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F    KW  + +       Y+V NADE + GT  DR I+  +P  L+EG +I + AIGA 
Sbjct: 146 FPVWNKWK-VAQQARADDKYVVANADEGDAGTYCDRMILEGDPFRLLEGMLICARAIGAG 204

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             ++Y R E+    ++L+AA+ +   + LL  +   G    I V  GAG+Y+CGEETALL
Sbjct: 205 RGYVYCRQEYPAAAKTLRAAIQKADEAELLELD---GEPFPIEVVEGAGSYVCGEETALL 261

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R +PP+PA  GLYG PT V+NV + A +P IL RG +W++  G + +RGT
Sbjct: 262 ESLEGKRGVVRARPPYPAQSGLYGRPTIVSNVLTFASIPNILSRGGAWHAALGTKQSRGT 321

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               + G V +P  VE    ++  +++E+  GG+        AV  GG      PA QM 
Sbjct: 322 MALQLGGRVKHPGLVEVPFGLSLHQVLEQFGGGMA-PGSRFKAVQVGGPLGSLFPASQM- 379

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              + YD   + G+ LG   ++V D  TD++        F   ESCG+CTPCR G+    
Sbjct: 380 DIPICYDAFAKAGAVLGHGGIVVYDHETDMVDLARHFMAFTADESCGKCTPCRIGSVRGR 439

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            ++ER+  G     ++ LL+++   ++  ++CALG  A +P+   I++F      ++ 
Sbjct: 440 EILERIQSGSGTIEDLALLHDLGDTMKVASLCALGGRAPYPVLTAIEHFPAEFRSKLR 497


>gi|262195156|ref|YP_003266365.1| NADH-quinone oxidoreductase, F subunit [Haliangium ochraceum DSM
           14365]
 gi|262078503|gb|ACY14472.1| NADH-quinone oxidoreductase, F subunit [Haliangium ochraceum DSM
           14365]
          Length = 445

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 202/437 (46%), Positives = 276/437 (63%), Gaps = 30/437 (6%)

Query: 5   QDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q ++ T  +G    ++++   + G +    + L   R+ I+ EVKAS LRGRGGAGF TG
Sbjct: 6   QTKVVTQHFGKDEARTIAGYETLGGYAVAKRALGMAREQILAEVKASNLRGRGGAGFPTG 65

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW F+P    D    LV NADESEPGTCKDR+++  +PH LIEG ++++ A+GA   +I
Sbjct: 66  VKWGFVPAGSKDVH--LVCNADESEPGTCKDRELLFWDPHRLIEGMIVSAHALGAVHNYI 123

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE +RE   LQ AV E Y  G LG N    G    + VH GAGAYICGEETALL SL
Sbjct: 124 YIRGEMMREVLVLQDAVREAYERGYLGDNIFGTGKACHLTVHRGAGAYICGEETALLNSL 183

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE--NNRGTK 240
           EG +GQPRLKPPFPA  GL+G PT VNNVE++  VPTI+ +G +W++  G E   + GT+
Sbjct: 184 EGLRGQPRLKPPFPAVKGLFGNPTVVNNVETLMNVPTIIDKGGAWFAALGPEGGRSGGTR 243

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +  +SGHV  P   E  M+ITF++LI++ CGG+  G   + AVIPGGSS+P L A ++  
Sbjct: 244 IVCVSGHVEKPGVYELPMTITFNQLIDEVCGGVWKGRK-VKAVIPGGSSMPPLTAEEL-D 301

Query: 301 AIMDYDGL----------------------KEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
             +++D L                      + + +  G+  ++VMD  TD++KA WR+  
Sbjct: 302 VPIEFDALMTDERIRPVEVLRGQQFDMGGGRALRTMAGSGGIVVMDDHTDVVKACWRIMK 361

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           FY HESCGQCTPCREGTGW+ ++  R+  G  +  +IDLL ++S  I G +ICALG+AAA
Sbjct: 362 FYAHESCGQCTPCREGTGWLEQICRRVAHGGGKPGDIDLLAQISHGIAGNSICALGEAAA 421

Query: 399 WPIQGLIKNFRPLIEER 415
           WP+ G I  FR   E +
Sbjct: 422 WPMMGFITKFRDEFEAK 438


>gi|296448075|ref|ZP_06889978.1| NADH dehydrogenase (quinone) [Methylosinus trichosporium OB3b]
 gi|296254432|gb|EFH01556.1| NADH dehydrogenase (quinone) [Methylosinus trichosporium OB3b]
          Length = 517

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/412 (36%), Positives = 224/412 (54%), Gaps = 5/412 (1%)

Query: 3   TDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
             Q R+ F  +  +   +L D ++ G    + K  E G   +I EV  SGLRGRGGAGF 
Sbjct: 99  AKQTRVTFERVGVIDPVNLDDYVAHGGGQGLAKAFEIGPAKVIEEVTKSGLRGRGGAGFP 158

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G+KW  +    +D   Y+V NADE + GT  DR +M  +P  LIEG  I  +AIGA   
Sbjct: 159 AGIKWKTVADAPAD-RRYVVTNADEGDSGTFADRMVMEGDPFVLIEGMTICGYAIGASKG 217

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FIY+R E+ +  E L  A++    +G LG N    G+  DI +  GAGAY+CGEET+LLE
Sbjct: 218 FIYLRAEYPQCAEVLTEALEAARKAGWLGPNVRGSGFAFDIELRIGAGAYVCGEETSLLE 277

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G  R KPP PA+VG    PT VNNV ++A  P IL +G  +Y+  G   +RGT 
Sbjct: 278 SLEGKRGIVRAKPPLPAHVGFMSRPTVVNNVLTLATAPAILAKGGEYYASLGVGRSRGTM 337

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
              I+G+V +    E    +T  E++    GG       + AV  GG     +P   +  
Sbjct: 338 PLQIAGNVKFGGLYETPFGLTLGEIVNDIGGG-SLSGRPVRAVQCGGPLGAYVPPS-LFD 395

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
              DY+  ++  S +G   ++V D + D+ +       F   ESCG+CTPCR G+   + 
Sbjct: 396 TPFDYEAFQKHDSLIGHGGLVVFDDTVDMAQMARFGMEFCAIESCGKCTPCRIGSTRGVE 455

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++R+V+G+  +  I+LL ++   ++  ++CALG  A +P++  ++++    
Sbjct: 456 TIDRIVEGVDVEANIELLSDLCHTMKFGSLCALGGFAPYPVESALRHYPEDF 507


>gi|190893704|ref|YP_001980246.1| formate dehydrogenase, beta subunit [Rhizobium etli CIAT 652]
 gi|190698983|gb|ACE93068.1| formate dehydrogenase protein, beta subunit [Rhizobium etli CIAT
           652]
          Length = 518

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/414 (36%), Positives = 220/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   SLSD  + G    + + +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKQQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAQIVKEVTDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     +   Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA 
Sbjct: 158 FPTGIKWKTVLDAPGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             FIY R E+     ++  AV     +G+LG +    G   DI V  GAGAY+CGEETAL
Sbjct: 217 KGFIYTRSEYPHAIAAMSEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RG
Sbjct: 277 LNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V Y    E +  ++  +++++  GG   G   + AV  GG      P   +
Sbjct: 337 TIPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFP-RTL 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +   +++ +GI  ++  +LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VETADKIARGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508


>gi|70731260|ref|YP_261001.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens Pf-5]
 gi|68345559|gb|AAY93165.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 451

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/406 (40%), Positives = 232/406 (57%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +     +  ++  +    K      +D I+  VK +GL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWFDEYQAKNGYAAARKAFADLSQDDIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH LIEG +I++ A+  +  +I++RGE+    +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ AV+E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLRRAVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIIGDGVEWYKSLAREGSEDHGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +T  EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  L KG  Q
Sbjct: 328 GTRMGTGLAMAVDDSINMVSLLRNMEQFFARESCGFCTPCRDGLPWSVKLLMALEKGQGQ 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + +I+ L  +   +  G+T CA    A  P+   IK FRP  E  I
Sbjct: 388 QGDIETLLGLVGFLGPGKTFCAHAPGAVEPLGSAIKYFRPEFEAGI 433


>gi|299771415|ref|YP_003733441.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter sp. DR1]
 gi|298701503|gb|ADI92068.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Acinetobacter sp. DR1]
          Length = 443

 Score =  437 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 163/400 (40%), Positives = 233/400 (58%), Gaps = 7/400 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +    K L      +++ +KA+ ++GRGGAGF  G+KWS M       P YL
Sbjct: 33  DDYEALEGYAGFKKALGMKPAEVLDVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 92  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 152 EQIRAKGYLGENILGSGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY G   G+  + GTK++  SG V +P   E  
Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE H GG+R G   L A +PGG+S   LPA  +    MD D + + GS LGT
Sbjct: 272 FGTTAREVIEDHAGGMREGLK-LKAWLPGGASTDFLPADTI-DLPMDADTIMKAGSRLGT 329

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++     L  F+  ESCG CTPCR+G  W ++ ++ L  G  +K +ID 
Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGFCTPCRDGLPWAVKALKALEAGEGKKEDIDH 389

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           L E+++ +  G+T CA    A  P+ G +K+FR   E ++
Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRGEFEAKV 429


>gi|134096580|ref|YP_001101655.1| NAD dependent formate dehydrogenase subunit beta: fdsB
           [Herminiimonas arsenicoxydans]
 gi|133740483|emb|CAL63534.1| NAD-dependent formate dehydrogenase beta subunit [Herminiimonas
           arsenicoxydans]
          Length = 525

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 147/413 (35%), Positives = 221/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      SL D ++   +  + K +      I+ EV  SGLRGRGGA F
Sbjct: 107 LKKQERLQFVRVGITDPVSLDDYLAHEGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAF 166

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D   Y+  NADE + GT  DR +M  +P  LIEG  IA  A+ A  
Sbjct: 167 PTGIKWKTVLGAEAD-QKYIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVNATE 225

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L  A+    A+G LG N    G   ++ V   AGAY+CGEETA+L
Sbjct: 226 GYIYVRSEYPHSIANLNEAIVAANAAGYLGKNILGSGRTFNLQVRKAAGAYVCGEETAML 285

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV S++ VP IL RGA++Y  FG   +RGT
Sbjct: 286 ESIEGKRGLVRAKPPLPALQGLFGKPTVINNVISLSAVPLILSRGATFYKDFGMGRSRGT 345

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ Y   VE++  +T  EL+    GG   G   + AV  GG     +P   + 
Sbjct: 346 LPMQLAGNLKYGGLVEKAFGVTLRELLYDFGGGSESGRP-IRAVQVGGPLGAYMPES-LF 403

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+    + S +G   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 404 DTPFDYEAFAAVASTVGHGGLVAFDDTVDMAKQARYAMHFCAVESCGKCTPCRIGSTRGV 463

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            VM++++    + ++I LL ++   +   ++CA+G+   +P+   + +F    
Sbjct: 464 EVMDKIIANQNRPQQIHLLRDLCDVMVTGSLCAMGNMTPFPVLSALNHFPEDF 516


>gi|262280142|ref|ZP_06057927.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260493|gb|EEY79226.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 443

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 164/400 (41%), Positives = 233/400 (58%), Gaps = 7/400 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +    K L      +++ +KA+ ++GRGGAGF  G+KWS M       P YL
Sbjct: 33  DDYEALEGYAGFKKALGMKPAEVLDVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 92  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ D+ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 152 EQIRAKGYLGENILGSGWNFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY G   G+  + GTK++  SG V +P   E  
Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE H GG+R G   L A +PGG+S   LPA  +    MD D + + GS LGT
Sbjct: 272 FGTTAREVIEDHAGGMREGLK-LKAWLPGGASTDFLPADTI-DLPMDADTIMKAGSRLGT 329

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++     L  F+  ESCG CTPCR+G  W ++ ++ L  G  +K +ID 
Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGFCTPCRDGLPWAVKALKALEVGEGKKEDIDH 389

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           L E+++ +  G+T CA    A  P+ G +K+FR   E ++
Sbjct: 390 LQELTRKLWIGKTFCAHAPGAMEPLMGALKHFRGEFEAKV 429


>gi|118472465|ref|YP_884576.1| formate dehydrogenase subunit beta [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173752|gb|ABK74648.1| formate dehydrogenase, beta subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 532

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 224/413 (54%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  QDR+ F  +      S  D +  G    + + L+     ++ EV  SGLRGRGGAGF
Sbjct: 101 MATQDRVTFARVGVTDPVSPDDYLDHGGLAGLRRALQMSPAEVVAEVTDSGLRGRGGAGF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +   C+D   ++  NADE + GT  DR +M  +P  LIEG  IA+ A+GA  
Sbjct: 161 PAGIKWKTVL-DCADALKFVCCNADEGDSGTFADRMVMEGDPFMLIEGMTIAAHAVGATE 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+     +++AA+D     G LG +    G   D+ V  G GAYICGEET++L
Sbjct: 220 GYIYIRSEYPDAIATMRAAIDIARGRGWLGDDVLGSGLRFDMHVRVGGGAYICGEETSML 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV +++ VP +L  GA  Y+ FG   +RGT
Sbjct: 280 ESLEGKRGMVRAKPPIPAINGLFGKPTVVNNVLTLSSVPLVLAEGAQAYADFGVGRSRGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           ++F + G++     VE +  IT  EL+E + GG       + AV  GG     LP+ +  
Sbjct: 340 QIFQLGGNIRRGGIVERAFGITLGELVEHYGGGT-LSGRPVRAVQVGGPLGAYLPSDR-F 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+   E G+ +G   ++V D + D+         F   ESCG+CTPCR G+   M
Sbjct: 398 DLPMDYEAFAEAGAMVGHGGIVVFDETVDMAAQARFAMEFCAAESCGKCTPCRVGSVRGM 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+  G  ++  + LL ++   +   ++CA+G     P++  + +F    
Sbjct: 458 EVIDRITAGDHREENLALLDDLCDVMTEGSLCAMGGLTPMPVRSALTHFPDDF 510


>gi|222150019|ref|YP_002550976.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4]
 gi|221737001|gb|ACM37964.1| NADH dehydrogenase I chain F [Agrobacterium vitis S4]
          Length = 518

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/414 (36%), Positives = 219/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+  +  G+    SL D         + K +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKNQTRLTFSRCGITDPLSLEDYRHYKGLTGLAKAIAMPPADIVTEVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    ++   Y+V NADE + GT  DR IM  +P  LIEG VIA  A+GA 
Sbjct: 158 FPTGIKWKTVADAKAE-QKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMVIAGIAVGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y R E+      ++ A++     G+LG++     Y  D+ V  GAGAY+CGEET+L
Sbjct: 217 KGYVYTRSEYPHAIVVMREAIEIARKQGILGASVLGSAYAFDMEVREGAGAYVCGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA  GL+G PT VNNV S+A +P I+ RGA +Y  +G   + G
Sbjct: 277 LNSLEGKRGVVRAKPPLPALEGLFGKPTVVNNVMSLASIPVIMDRGAQFYRDYGVGRSHG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E +  +T  E+I    GG       + AV  GG      P   +
Sbjct: 337 TIPIQIAGNVKHGGLYETAFGLTLGEIINDIGGGT-LTGRPVKAVQVGGPLGAYFPPS-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              + DY+     G  +G A ++V D S D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTVFDYEAFTAAGGLIGHAGIVVFDDSADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  ++R+ KGI  ++   LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VETVDRIAKGIEPEKNKVLLEDLCNTMKFGSLCALGGFTPYPVMSAMTHFPQDF 508


>gi|302543439|ref|ZP_07295781.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461057|gb|EFL24150.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 459

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 198/418 (47%), Positives = 255/418 (61%), Gaps = 13/418 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +L   +    +    K L    D +I  VK +GLRGRGGAGF TGMKW F+P+    
Sbjct: 28  NSWTLRAYLRHEGYQGSAKALAMDPDAVIALVKDAGLRGRGGAGFPTGMKWQFIPQ-GDG 86

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +PHYLVVNADESEPGTCKD  ++   PH LIEG VIA  AI +  AFIY+RGE +     
Sbjct: 87  KPHYLVVNADESEPGTCKDIPLLYANPHALIEGMVIACHAIRSEHAFIYLRGETVPVLRR 146

Query: 136 LQAAVDECYASGLLG----SNSKLGYD----VDIIVHHGAGAYICGEETALLESLEGKKG 187
           L  AV E Y +G LG       KLG D    +DI VH GAGAYICGEETALL+SLEG++G
Sbjct: 147 LHEAVREAYEAGYLGTAERRREKLGVDGLPGLDITVHAGAGAYICGEETALLDSLEGRRG 206

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           QPRL+PPFPA  GLY CPT VNNVESIA VP+IL +G  W+   G E + G  L+S+SGH
Sbjct: 207 QPRLRPPFPAVAGLYACPTVVNNVESIASVPSILNKGKEWFRSMGSEKSPGFTLYSLSGH 266

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V  P   E  + IT  +L++   G        L    PGGSS P L    +    +DY+G
Sbjct: 267 VANPGQFEGPLGITLRQLLDMSGGM--RPGHRLKFWTPGGSSTPLLTEEHL-DVPLDYEG 323

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           +   GS LGT A+   D +T +++A+ R + FY HESCG+CTPCREGT W+++++  +  
Sbjct: 324 VGAAGSMLGTKALQCFDETTCVVRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDVEA 383

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           G  +  ++D L +++ NI G++ CALGD AA PI   +K FR   E+ I     C F 
Sbjct: 384 GKGRMADLDKLADIADNINGKSFCALGDGAASPIFSSLKYFRAEYEQHITGGG-CPFD 440


>gi|254284253|ref|ZP_04959221.1| Fe-hydrogenase, subunit beta [gamma proteobacterium NOR51-B]
 gi|219680456|gb|EED36805.1| Fe-hydrogenase, subunit beta [gamma proteobacterium NOR51-B]
          Length = 514

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 145/415 (34%), Positives = 215/415 (51%), Gaps = 5/415 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+     G      +      G +  +   L      I++EVK SGLRGRGGA 
Sbjct: 98  FLKNQQRLTFERAGEGDPLCIETYQQLGGFVGLRNALAMTAQQIVDEVKESGLRGRGGAA 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW  +         Y+V NADE + GT  DR +M  +P  LIEG  IA+ A+GA 
Sbjct: 158 FPAGIKWQTVLDAV-GNRKYIVCNADEGDSGTFADRLLMEADPFQLIEGMTIAALAVGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+R E+    + L  A++    +G LG +    G    + V  GAGAYICGEET+L
Sbjct: 217 QGYIYLRSEYPLAHQILNEAIERAEQAGYLGDDLLGSGQAFHLEVRLGAGAYICGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA  GL+G PT VNNV ++A V T+L +G+ +Y  FG   +RG
Sbjct: 277 LNSLEGKRGIVRAKPPLPAIEGLFGKPTVVNNVLTLAAVTTVLAKGSDFYQDFGVGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE +   T  +L+ +  GG       L A+  GG     LP    
Sbjct: 337 TLAFQLAGNIERGGLVELAFGTTLRDLVSEF-GGDSASGRPLRAIQVGGPLGAYLPESS- 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+   E+G  +G   V+V D S ++         F   ESCG+CTPCR G    
Sbjct: 395 WDTPLDYEAFAEIGGMIGHGGVVVFDESINMSDQARFAMDFCAEESCGKCTPCRVGAVRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           + V++R+ +G   ++  +LL ++   +E  ++CA+G    +P++  +  F    +
Sbjct: 455 VEVIDRIREGNEPEKNRELLLDLCDTMESASLCAMGGMTPFPVRSALHYFPEDFQ 509


>gi|229591257|ref|YP_002873376.1| NADH dehydrogenase I subunit F [Pseudomonas fluorescens SBW25]
 gi|312961690|ref|ZP_07776188.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens
           WH6]
 gi|229363123|emb|CAY50142.1| NADH dehydrogenase I chain F [Pseudomonas fluorescens SBW25]
 gi|311283949|gb|EFQ62532.1| NADH-quinone oxidoreductase, F subunit [Pseudomonas fluorescens
           WH6]
          Length = 451

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 162/406 (39%), Positives = 231/406 (56%), Gaps = 7/406 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K      +D I+  VK +GL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQAKNGYAAARKAFADMAQDDIVQTVKDAGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH LIEG +I++ A+  +  +I++RGE+    +
Sbjct: 90  INIRYLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKTYRGYIFLRGEYTTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV+E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 HLNRAVEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIIADGVDWYKSLAREGSEDMGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    +T  EL E + GG+R G+  L A  PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVTARELFEDYAGGMRDGY-TLKAWQPGGAGTGFLLPEHL-DAQMYAGGIGKV 327

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G+ +GT   + +D + +++  +  +  F+  ESCG CTPCR+G  W ++++  L  G  +
Sbjct: 328 GTRMGTGLAMAVDNTVNMVSLLRNMEQFFARESCGFCTPCRDGLPWSVKLLMALENGEGR 387

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           + +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 388 EGDIETLLGLVGFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 433


>gi|21672441|ref|NP_660508.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008857|sp|Q8K9Y3|NUOF_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|21623053|gb|AAM67719.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 447

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 160/410 (39%), Positives = 242/410 (59%), Gaps = 8/410 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + +   +  + ++ K L+    + +++ +K SGL+GRGGAGFSTG+KWS M K  S +  
Sbjct: 26  IEEYCKKNGYFSLKKALKTMCPEDVVHLIKESGLKGRGGAGFSTGLKWSLMSKDNSSKIR 85

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M + PH LIEG ++++FA+     +I++RGE+I+    L+ 
Sbjct: 86  YLLCNADEMEPGTYKDRFLMENIPHQLIEGMLLSAFALNVSRGYIFLRGEYIKAEYILKK 145

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           ++ E    G +GSN    G++ ++ +H GAG YICGEETAL+ SLEG++  PR KPPFPA
Sbjct: 146 SIQEAINFGFIGSNILNSGFNFELFLHTGAGRYICGEETALINSLEGRRANPRAKPPFPA 205

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNRGTKLFSISGHVNYPCTVEE 256
             GL+G PT VNNVE+++ VP+I+  G +WY    +  +  GTKL   SG VN P   E 
Sbjct: 206 VFGLWGKPTCVNNVETLSNVPSIVLHGVNWYKKLSKSTDTTGTKLMGFSGKVNNPGVWEL 265

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  E++E +  G++ G   L +  PGG+    L    +    MD+  + + GS LG
Sbjct: 266 PFGTTAREILEDYARGMKSGL-FLKSWQPGGAGTDFLIEKHL-DLPMDFTSIAKAGSRLG 323

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           TA  + +D  T++I  +  +  F+  ESCG CTPCREG  W+++++E L K    K ++ 
Sbjct: 324 TAIAMAVDNKTNMISLVCNIEKFFSRESCGLCTPCREGLPWIVKILESLEKKEGHKNDVK 383

Query: 377 LLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER--IDQYHRCN 423
            L  +  ++  G+T CA    A  P+Q  IK FR   E    I +  +C+
Sbjct: 384 NLERLCLDLSPGKTFCAHAPGAVEPLQSAIKYFRLEFEAGISIKKLKKCS 433


>gi|56751243|ref|YP_171944.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301]
 gi|56686202|dbj|BAD79424.1| NADH dehydrogenase I chain F [Synechococcus elongatus PCC 6301]
          Length = 534

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 139/419 (33%), Positives = 236/419 (56%), Gaps = 9/419 (2%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGA 58
             + Q +I     G +    L   ++ G +  +   I +     +   ++ SGLRGRGG 
Sbjct: 112 FFSQQLKIVNRHSGLINPDRLESYLAAGGYRALMHTIFDLTPTEVAEIIRLSGLRGRGGG 171

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ + K+ SD   ++V N DE +PG   DR ++  +PH +IEG  IA++A+GA
Sbjct: 172 GYPTGLKWATVAKMPSD-RKFVVCNGDEGDPGAFMDRSVLESDPHQVIEGMAIAAYAVGA 230

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
           +  ++YVR E+      L  A+ +    GLLG++     +  D+ V  GAGA++CGEETA
Sbjct: 231 NFGYLYVRAEYPLAIARLNQAIRQARRRGLLGNSVLDSRFSFDLEVRIGAGAFVCGEETA 290

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S++G++G PR++PP+PA  GL+G PT +NNVE+ A +  I+ + A W++  G   ++
Sbjct: 291 LIHSIQGERGVPRVRPPYPAESGLWGHPTLINNVETFANIAPIVEQSADWFAAIGTPTSK 350

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G +     +E  M I    +++    G+      + AV  GG S  C+P  Q
Sbjct: 351 GTKVFALTGKLRNNGLIEVPMGIPLRSIVD----GMGIPESPVKAVQTGGPSGGCIPLAQ 406

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L ++GS +G+  ++VMD +TD++        F + ESCG+C PCR GT  
Sbjct: 407 L-DTPVDYDSLIQLGSMMGSGGMVVMDENTDMVAIARFYMEFCRSESCGKCIPCRAGTVQ 465

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +  ++ +L  G     ++  L ++   ++  ++C LG +A  PI   ++ FR   E R+
Sbjct: 466 LHELLGKLSSGQGTAIDLQQLEDLCYLVKDTSLCGLGMSAPNPILSTLRWFRQEYESRL 524


>gi|311697064|gb|ADP99937.1| NADH dehydrogenase (quinone) [marine bacterium HP15]
          Length = 512

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 153/415 (36%), Positives = 228/415 (54%), Gaps = 4/415 (0%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F+ +      S++D  S G +  +++ +      I++EVKASGLRGRGGA F
Sbjct: 100 LKLQQRLTFSRIGITDPLSIADYRSHGGFVGLEQAVSLSPQAIVDEVKASGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +      +  Y+V NADE + GT  DR  M  +P+ LIEG  IA  A+GA  
Sbjct: 160 PTGIKWQTVHDEPWQQQKYIVCNADEGDSGTFADRLAMECDPYMLIEGMTIAGLAVGATQ 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+R E+      L  A+    A G LG +    G   ++ V   AGAYICGEET+LL
Sbjct: 220 GFIYLRSEYPVAHRILNEAISRAEAEGYLGRDVRGSGRAFNLEVRLAAGAYICGEETSLL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S A VP IL +G   Y+ +G   +RGT
Sbjct: 280 ESLEGKRGLVRAKPPLPAIKGLFGQPTVVNNVLSFAAVPFILAKGGQTYAHYGMGKSRGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++     +E +  ++  E++E   GG       + AV  GG  +  +P  Q  
Sbjct: 340 LPIQLAGNIRRGGLIELAFGVSLREILEDFGGGT-FTGRPMKAVQVGGPLMAYMPQNQ-W 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+   ++G+G+G   V+V D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 398 DTPMDYEAFAQLGAGIGHGGVVVFDDTVDMGEQARFAMEFCTVESCGKCTPCRIGSVRGL 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            V++R+  G + +  + LL E+ + +   ++CA+G    +P+Q ++K F   +  
Sbjct: 458 EVIDRIRAGESPEANLVLLEELCETMVDGSLCAMGGMTPFPVQSVMKYFPDDLTA 512


>gi|254282080|ref|ZP_04957048.1| NADH dehydrogenase i chain f [gamma proteobacterium NOR51-B]
 gi|219678283|gb|EED34632.1| NADH dehydrogenase i chain f [gamma proteobacterium NOR51-B]
          Length = 417

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 163/411 (39%), Positives = 236/411 (57%), Gaps = 8/411 (1%)

Query: 20  LSDSMSRGHWDNVD-KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP-KVCSDRP 77
           ++   + G ++++   I ++     +  +K S LRGRGGAGF TGMKWSF+P    +   
Sbjct: 1   MAAYEANGGYNSLKTNIGQRTPAECLEIIKDSNLRGRGGAGFPTGMKWSFVPMDNATPGH 60

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDR +M  +PH LIEG +++++ + A  A+I++R E+ +    L+
Sbjct: 61  KYLICNADEMEPGTFKDRLLMECDPHQLIEGMILSAYTLQADIAYIFIRAEYHKAIGLLR 120

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+  C+  G LG N    G+ +++ VH  AG YICGEETAL+ SLEGK+  PR KPPFP
Sbjct: 121 EAITACHEKGYLGDNILGSGFSLEMHVHVSAGRYICGEETALISSLEGKRANPRAKPPFP 180

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT VNNVE++  +  IL  GA W+   G+  + GTKL+ +SG V  P   E 
Sbjct: 181 QVSGLWGRPTIVNNVETLCNIHHILEFGADWFQALGKGEDAGTKLYGVSGRVKNPGCWEL 240

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            +  +  E+IE H GG+  G+ +L   +PGG S   L    +    MDY  + + GS +G
Sbjct: 241 PIGTSIREIIEDHAGGMEDGY-SLRGFLPGGGSTDFLTPEHL-DLAMDYGTIGKAGSRMG 298

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T  +IV+D  T  I  I  L+ F+  ESCG CTPCR+G  W  +V+E L  G  +  +++
Sbjct: 299 TGTMIVLDDKTCPIGFIHNLTSFFARESCGFCTPCRDGLPWSAQVLESLENGDGRPEDLE 358

Query: 377 LLYEVSKNIE--GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            L      I   G T CAL   A  P+Q  +K FR   E  I++   C ++
Sbjct: 359 TLAYQIDYIGAIGNTHCALAPGAMEPVQSALKYFREDFEAHINEGC-CPYE 408


>gi|152981173|ref|YP_001355343.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium
           sp. Marseille]
 gi|151281250|gb|ABR89660.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium
           sp. Marseille]
          Length = 518

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 145/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      SL D ++   +  + K +      I+ EV  SGLRGRGGA F
Sbjct: 99  LKKQERLQFVRVGITDPVSLEDYLAHDGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +    Y+  NADE + GT  DR +M  +P  LIEG  IA  A+ A  
Sbjct: 159 PTGIKWKTVLGAEA-AQKYIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVKATE 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L  A+    A+G LG N    G   ++ V   AGAY+CGEETA+L
Sbjct: 218 GYIYVRSEYPHSIANLNEAIVAANAAGYLGENILGSGRTFNLQVRKAAGAYVCGEETAML 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV S++ VP IL RGA +Y  +G   +RGT
Sbjct: 278 ESIEGKRGMVRAKPPLPALQGLFGQPTVINNVISLSAVPLILSRGAEFYKNYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ Y   VE++  +T  EL+    GG   G   + AV  GG     +P   + 
Sbjct: 338 LPMQLAGNLKYGGLVEKAFGVTLRELLYDFGGGSESGRP-IRAVQVGGPLGAYMPES-LF 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+    + S +G   ++  D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 396 DTPFDYEAFAAVASTVGHGGLVAFDDTVDMAKQARYAMHFCAEESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            VM++++    + ++I LL ++   +   ++CA+G+   +P+   + +F    
Sbjct: 456 EVMDKIIANQNRPQQIHLLRDLCDVMVTGSLCAMGNMTPFPVLSALNHFPEDF 508


>gi|262373371|ref|ZP_06066650.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter junii
           SH205]
 gi|262313396|gb|EEY94481.1| NADH oxidoreductase (quinone), F subunit [Acinetobacter junii
           SH205]
          Length = 441

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 158/403 (39%), Positives = 228/403 (56%), Gaps = 7/403 (1%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            +  +   +    K L      +++ +KA+ ++GRGGAGF  G+KWS M       P YL
Sbjct: 33  DEYEALEGYAGFKKALSMPPKDVLDVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 92  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATHGYIFIRGEYIEAAQYLNEAL 151

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 152 EQIRAKGYLGENILGSGWNFEMYVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY       +   GTK++  SG V +P   E  
Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYINLSAHKSKDPGTKIYGASGKVKFPGLWELP 271

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE H GG+R G   L A +PGG+S   L A  +    MD + + + GS LGT
Sbjct: 272 FGTTAREVIEDHAGGMRDGL-TLKAWLPGGASTDFLAAEHI-DLPMDAESIMKAGSRLGT 329

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++ A   L  F+  ESCG CTPCR+G  W ++ ++ L  G  +  +I  
Sbjct: 330 CLLMVVDETQCMVSATRNLEEFFARESCGWCTPCRDGLPWAVKALKALESGEGKMEDIQH 389

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           L E++K +  G+T CA    A  P+ G +K FR   E ++  +
Sbjct: 390 LSELTKKLWIGKTFCAHAPGAMEPLMGALKYFRHEFEAKVKTH 432


>gi|257453971|ref|ZP_05619247.1| NADH oxidoreductase, f subunit [Enhydrobacter aerosaccus SK60]
 gi|257448636|gb|EEV23603.1| NADH oxidoreductase, f subunit [Enhydrobacter aerosaccus SK60]
          Length = 490

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 169/403 (41%), Positives = 234/403 (58%), Gaps = 7/403 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            L+   S   ++ +   L K    + N +K + +RGRGGAGF+ G+KW+FM       P 
Sbjct: 52  DLATYESLKGFEGLKNALAKSAKEVGNMIKDANVRGRGGAGFNAGLKWTFMT-PPDGGPR 110

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   P  LIEG +I+ +AIGA   +I++RGE+I   + L  
Sbjct: 111 YLICNADEMEPGTFKDRLLMERLPFQLIEGMIISGYAIGATAGYIFIRGEYIEAAKRLNN 170

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+DEC A G LG N    GY  D+ VH GAG YICGEETAL+ SLEG++  PR KPPFP 
Sbjct: 171 ALDECRAKGYLGDNILGSGYSFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQ 230

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
             G +G PT VNNVES+  +P I+  G  WY G   G+  N GTK+   SG VN P   E
Sbjct: 231 VSGAWGRPTVVNNVESLNNMPGIMLHGVEWYKGLAQGKSENPGTKIMGCSGLVNEPGLWE 290

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDYDGLKEMGSG 314
                T  E+I  +  G++ G   L A +PGG+S   L A  +     MD++ + + GS 
Sbjct: 291 LPFGTTAREIIFDYAKGMKDGRK-LKAWLPGGASTDFLTASDEHLDLPMDFEPIMKAGSR 349

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT  ++V+D S D++     L  F+  ESCG CTPCR+G  W ++ +  +  G  Q  +
Sbjct: 350 LGTCLIMVVDESQDMVSLSLNLQKFFARESCGWCTPCRDGLPWGVKTLHAIDTGNGQPVD 409

Query: 375 IDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ID+L +++K++  G+T CA    A  P+Q  +K F P  E +I
Sbjct: 410 IDVLRQLTKDLWLGKTFCAHAPGAVEPLQSALKYFLPEFEAKI 452


>gi|312139313|ref|YP_004006649.1| NADH dehydrogenase (quinone) chain f nuof [Rhodococcus equi 103S]
 gi|311888652|emb|CBH47964.1| NADH dehydrogenase (quinone) chain F NuoF [Rhodococcus equi 103S]
          Length = 688

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 206/428 (48%), Positives = 264/428 (61%), Gaps = 18/428 (4%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            D+DR           +L        +  + K L    D +I  VK +GLRGRGGAGF T
Sbjct: 255 WDEDR---------SWTLDAYHGHDGYTALRKALRMNPDEVIQTVKDAGLRGRGGAGFPT 305

Query: 63  GMKWSFMPKVCSDR----PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GMKWSF+P+  +      PHYLVVNADESEPGTCKD  +M   PHTLIEG VIA++AI A
Sbjct: 306 GMKWSFIPQDPATDGTAKPHYLVVNADESEPGTCKDIPLMFATPHTLIEGVVIAAYAIRA 365

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             AF+YVRGE +     LQAAV E Y +G LG +    GYD+DI+VH GAGAYICGEETA
Sbjct: 366 AQAFVYVRGEVVPVLRRLQAAVAEAYDAGYLGRDILGSGYDLDIVVHAGAGAYICGEETA 425

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+SLEG++GQPRL+PPFPA  GLY  PT VNNVESIA VP I+ RG  W+ G G E + 
Sbjct: 426 LLDSLEGRRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPPIILRGPEWFRGMGSEASP 485

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G  L+S+SGHV  P   E  + +T  +L++   G        L    PGGSS P L    
Sbjct: 486 GFTLYSLSGHVTRPGQYEAPLGVTLRQLLDVAGG--VRAGHRLKFWTPGGSSTPLLTDEH 543

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+G+   GS LGT A+ + D +T I++ + R + FY HESCG+CTPCREGT W
Sbjct: 544 L-DVPLDYEGVAGAGSMLGTKALQIFDETTCIVRVVLRWTQFYAHESCGKCTPCREGTYW 602

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +++++ERL +G     +++ L +VS  I G++ CALGD AA PI   +K FR      + 
Sbjct: 603 LVQILERLERGEGSAEDLEKLLDVSDTILGKSFCALGDGAASPIMSSLKYFRDEYVAHVG 662

Query: 418 QYHRCNFQ 425
               C F 
Sbjct: 663 GRG-CPFD 669


>gi|332285353|ref|YP_004417264.1| NAD-dependent formate dehydrogenase beta subunit [Pusillimonas sp.
           T7-7]
 gi|330429306|gb|AEC20640.1| NAD-dependent formate dehydrogenase beta subunit [Pusillimonas sp.
           T7-7]
          Length = 523

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 227/413 (54%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    S+SD  +   +  ++K L      I+++V  SGLRGRGGA F
Sbjct: 101 LKRQERLTFARVGITDPLSISDYQAHEGFKGLEKALSLPPAAIVDQVTESGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    ++   Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+ A  
Sbjct: 161 PTGIKWKTVLATEAE-QKYIVCNADEGDSGTFSDRMLMEGDPYALIEGMAIAGLAVQATY 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG+N +  G+  D+ V   AGAYICGEET+LL
Sbjct: 220 GYIYVRSEYPYAITALEAAIVRAREAGWLGANIRNSGHAFDLEVRTAAGAYICGEETSLL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL RGA++Y  +G   + GT
Sbjct: 280 ESLEGKRGLVRAKPPLPAIKGLFGKPTVINNVISLASVPIILARGAAFYRDYGMGRSTGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE++  +T  EL+ +  GG   G   L AV  GG     LP  Q  
Sbjct: 340 LPFQLAGNLKQGGLVEKAFGLTLRELLYEFGGGSASG-KPLRAVQVGGPLGAYLPESQ-W 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    + + +G   ++  D + D+         F   ESCG+CTPCR G     
Sbjct: 398 DVPIDYEAYAAIKAMVGHGGLVAFDDTADMSSLAEYAMEFCAIESCGKCTPCRIGAVRGA 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+ ++ +   ++ ++ LL+E+   +   ++CALG    +P+   +++F    
Sbjct: 458 EVISKIRRNEQREAQVVLLHELCDTMLAGSLCALGGMTPYPVLSALEHFPEDF 510


>gi|300775177|ref|ZP_07085039.1| NADH dehydrogenase (quinone) [Chryseobacterium gleum ATCC 35910]
 gi|300505917|gb|EFK37053.1| NADH dehydrogenase (quinone) [Chryseobacterium gleum ATCC 35910]
          Length = 452

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 199/411 (48%), Positives = 266/411 (64%), Gaps = 15/411 (3%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
                +G +   +K L+   D I+ EVKASGLRGRGGAGF TGMKWSF+ K     P +L
Sbjct: 19  ETYRKQGGYTAAEKALKMTPDEILEEVKASGLRGRGGAGFPTGMKWSFLAK-PEGVPRHL 77

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           VVNADESEPGT KDR +M   PH LIEG +I+S+ +G++ ++IY+RGE+    + L+ A+
Sbjct: 78  VVNADESEPGTFKDRYLMEFLPHLLIEGMLISSYCLGSNTSYIYIRGEYSWIPDILEEAI 137

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +E  A+G LG N    G+D++I V  G GAYICGEETALLESLEGK+G PRLKPPFPA  
Sbjct: 138 EEAKAAGFLGKNILGTGFDLEIYVQRGGGAYICGEETALLESLEGKRGNPRLKPPFPAVK 197

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GL+  PT VNNVESIA V  I+    + Y+  G   + GTKL S  G++N P   E  M+
Sbjct: 198 GLWERPTVVNNVESIAAVVPIIDITGAEYAKIGVGRSTGTKLISACGNINKPGVYEIDMT 257

Query: 260 ITFDELIE--KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI------MDYDGLK-- 309
           IT +E I   ++CGGI+     L A IPGGSSVP +PA  +   +      M+Y+ L   
Sbjct: 258 ITVEEFIYSDEYCGGIK-DGKRLKACIPGGSSVPIVPANLLLRTVNGEPRYMNYESLADG 316

Query: 310 --EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
               G+ +G+   IV+D    I++    L+ FY HESCGQCTPCREGTGWM ++++++ K
Sbjct: 317 GFATGTMMGSGGFIVLDEDQCIVEHTMTLARFYNHESCGQCTPCREGTGWMYKILKKIEK 376

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           G  +  +IDLL+++ + IEG TIC LGDAAAWP+   I++FR   E  +  
Sbjct: 377 GEGKMEDIDLLWDIQRKIEGNTICPLGDAAAWPVAAAIRHFRDEFEWHVKN 427


>gi|332669454|ref|YP_004452462.1| NADH-quinone oxidoreductase subunit F [Cellulomonas fimi ATCC 484]
 gi|332338492|gb|AEE45075.1| NADH-quinone oxidoreductase, F subunit [Cellulomonas fimi ATCC 484]
          Length = 446

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 195/402 (48%), Positives = 250/402 (62%), Gaps = 5/402 (1%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
             +  +L+     G +  + + L      ++  VK SGLRGRGGAGF TGMKW F+P   
Sbjct: 15  ADRSWTLTSYERAGGYRGLRRALAMQAADVVTMVKESGLRGRGGAGFPTGMKWGFLP-AP 73

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
              P YLVVNADESEPGTCKD  +M   P  L+EG +I S+AIG H AF+YVRGE +   
Sbjct: 74  DGGPRYLVVNADESEPGTCKDIPLMMASPQHLVEGMIITSYAIGCHHAFLYVRGEVLHVY 133

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
             L  A++E  A+G LG N    G+D++I +H GAGAYICGEETALL+SLEG +GQPRLK
Sbjct: 134 RRLLHAIEEARAAGYLGRNILGSGFDLEITLHAGAGAYICGEETALLDSLEGLRGQPRLK 193

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFPA  GLY  PT VNNVESIA VP I+R GA W+ G G E + G  LFS+SGHV  P 
Sbjct: 194 PPFPAVAGLYARPTVVNNVESIASVPGIVRGGADWFKGMGTERSTGHGLFSLSGHVTRPG 253

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  + IT  EL++   G        +    PGGSS P   A  +    +DY+ +   G
Sbjct: 254 QYEAPLGITLRELLDMAGG--IREGHQVKFWTPGGSSTPIFTAEHL-DVPLDYESVGAAG 310

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT A+ + D +T +++A+ R   FYKHESCG+CTPCREGT W+++V++R+  G    
Sbjct: 311 SMLGTRALQIFDETTSVVRAVTRWLEFYKHESCGKCTPCREGTYWLVQVLKRIEAGRGTH 370

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            +IDLL ++  NI GR  CALGD A  PI   ++ FR   E 
Sbjct: 371 EDIDLLLDLCDNILGRAFCALGDGATSPITSAVQYFREEFEA 412


>gi|144897650|emb|CAM74514.1| NADH dehydrogenase (quinone) [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 511

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 226/413 (54%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
              Q R+ F         S++D  + G +  +++ L      I+ EV  SGLRGRGGAGF
Sbjct: 101 FKHQQRLTFARCGLTDPLSVADYRAHGGFAGLERALTLSPSEIVEEVTQSGLRGRGGAGF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+ +    S    ++  NADE + GT  DR I+  +P  LIEG  IA+ A+GA  
Sbjct: 161 PTGIKWNTVL-NASAAEKFVCCNADEGDSGTFADRMIIEGDPFLLIEGMTIAALAVGARQ 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+     +L+ A+   Y    LG+N    G+D  + V  GAG+Y+CGEETA+L
Sbjct: 220 GYVYLRSEYPHAVATLREAIRRAYEQDWLGTNIHGSGHDFHLEVRVGAGSYVCGEETAML 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV ++  VP +L +GA++Y  FG   + GT
Sbjct: 280 ESLEGKRGMVRAKPPIPALQGLFGQPTIVNNVLTLTSVPVVLAKGAAFYRDFGAGRSHGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + F ++G++     VE +  ++  +LI ++ GG   G   L AV  GG     +P   M 
Sbjct: 340 QPFQLAGNIQRGGLVELAFGVSLHDLIYRYGGGTASGRP-LRAVQVGGPLGAYVPES-ML 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
           G   DY+ + E G+ LG   ++V D +  + +       F   ESCG+CTPCR G+    
Sbjct: 398 GLSADYESMAEAGAMLGHGGIVVFDETVRMARMARFAMDFCAVESCGKCTPCRIGSTRGR 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++++V G      + LL ++   +   ++CA+G  A  P+Q  I++F    
Sbjct: 458 EVLDKIVAGENVADNMALLDDLCTVMADGSLCAMGGLAPLPVQSAIRHFPEDF 510


>gi|33600308|ref|NP_887868.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella
           bronchiseptica RB50]
 gi|33567907|emb|CAE31820.1| NAD-dependent formate dehydrogenase beta subunit [Bordetella
           bronchiseptica RB50]
          Length = 526

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 154/414 (37%), Positives = 230/414 (55%), Gaps = 6/414 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G    +++ L    + I++EV ASGLRGRGGA F
Sbjct: 105 LKHQERLTFARVGVIDPLSLQDYAAHGGLAGLNRALAMSAEQIVDEVSASGLRGRGGAAF 164

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +    Y+V NADE + GT  DR +M  +P++LIEG  IA  A+GA  
Sbjct: 165 PTGIKWKTVLTTPAP-RKYIVCNADEGDSGTFADRLLMEGDPYSLIEGMTIAGLAVGATY 223

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+ A+      G LG +    G   D+ V  GAGAYICGEET+LL
Sbjct: 224 GYIYVRSEYPHAIATLRQAIARAREVGWLGDDIHGSGQRFDLEVREGAGAYICGEETSLL 283

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VPTI+ RGA+ Y  FG   + GT
Sbjct: 284 ESLEGKRGVVRAKPPLPAIAGLFGLPTVINNVISLATVPTIMARGAAHYRDFGVGRSHGT 343

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE++  +T  +L+    GG   G   L AV  GG     LP  Q  
Sbjct: 344 LPFQLAGNLKHGGLVEKAFGLTLRDLLYGFGGGSASGRP-LRAVQVGGPLGAYLPESQ-W 401

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + +G   ++  D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 402 DVPLDYEAYVQISAMVGHGGLVAFDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGV 461

Query: 360 RVMERLVKGIAQKRE-IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++++V G  Q+ + + LL ++   +   ++CALG  A +P+   + +F    
Sbjct: 462 ETIDKIVAGGPQREQRVHLLRDLCDTMLAGSLCALGGMAPYPVLSALNHFPEDF 515


>gi|325067542|ref|ZP_08126215.1| NADH-quinone oxidoreductase, F subunit [Actinomyces oris K20]
          Length = 443

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 198/415 (47%), Positives = 250/415 (60%), Gaps = 15/415 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQ+R           +L   +  G ++ + K      + +I+ +K SGLRGRGGAGF 
Sbjct: 20  LWDQER---------SWTLQAYLDHGGYEGLKKAKTLSCEDLISLIKDSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+P V    P YLVVNADESEPGTCKD   +   P  LIEG  I S AIG   A
Sbjct: 71  TGLKWSFLPPVDGG-PRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179
           F+Y+RGE       L +AV E   SGLL +   L     + I  H GAGAYICGEETALL
Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLLDTGFGLDGQQRLRITAHAGAGAYICGEETALL 189

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEG++G PRLKPPFPA  GLY  PT VNNVE+IA VP IL RGA WYS  G E ++G 
Sbjct: 190 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSKGH 249

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
            +FS+SGHV +P   E    IT  ELIE   G        L   +PGGSS P     ++ 
Sbjct: 250 GIFSVSGHVAHPGQYEAPFGITMRELIELSGG--IRPGHELKFWVPGGSSTPIFGPDEL- 306

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ + E GS LGT A+ V D +  +++ + R + FY+HESCG+CTPCREGT WM 
Sbjct: 307 DVPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMR 366

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           ++M RL  G     +++ L  ++ NI GR+ CALGDA+A P+   IK FR   E 
Sbjct: 367 QIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFEA 421


>gi|171914655|ref|ZP_02930125.1| NADH-quinone oxidoreductase, F subunit [Verrucomicrobium spinosum
           DSM 4136]
          Length = 463

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 201/426 (47%), Positives = 260/426 (61%), Gaps = 19/426 (4%)

Query: 3   TDQDRIFTNLY--GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
            +   IF N+   G    S+   ++ G ++ + K +   R  II+EVK SGLRGRGGAGF
Sbjct: 16  REHRLIFRNIDREGYTP-SIESFVANGGYEMLKKAVGMERQAIIDEVKKSGLRGRGGAGF 74

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW F+P   + +P YL+ NADESEPGT KDR I+  +PH LIEG VIA FA+ A  
Sbjct: 75  PTGVKWGFIP-PTNTKPVYLICNADESEPGTFKDRYILHQDPHQLIEGMVIACFAVKATL 133

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IYVR EF      L+ A+ E  A+  LG N    GYD+DI VH GAGAYICGEET L+
Sbjct: 134 AYIYVREEFPEAAIILEKALAEARANNFLGKNILGTGYDLDIFVHRGAGAYICGEETGLI 193

Query: 180 ESLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           ESLEGK+  PR+KPP FPA +GLY CPT VNNVES+  V  IL  G   Y+  G  NN G
Sbjct: 194 ESLEGKRPYPRIKPPYFPAALGLYMCPTIVNNVESLCHVKHILEMGGEEYAKLGTPNNTG 253

Query: 239 TKLFSISGHVNYPCTVEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           T++  +SG V  P   E  +  +T  E+I   CGG++ G   L A+IPGGSS   L A +
Sbjct: 254 TRILCVSGDVQKPGYFEVQVGKVTMGEVINDLCGGLKPGRK-LKAIIPGGSSAKVLRADE 312

Query: 298 -----------MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
                      +    MD+D +   GS  G+  VI+MD S  +   I  L+ FY HESCG
Sbjct: 313 VFKLRDGRELGIMDIPMDFDTMAACGSMAGSGGVIIMDDSRSMTWVINNLNNFYAHESCG 372

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           QCTPCREG+ WM ++ +R+V G A   ++  L  V+ NIEG+TICA G+A +WP Q  +K
Sbjct: 373 QCTPCREGSLWMKKISDRIVAGEASPSDVAELERVANNIEGKTICAFGEACSWPTQSFVK 432

Query: 407 NFRPLI 412
            FR  +
Sbjct: 433 KFREEM 438


>gi|119475815|ref|ZP_01616167.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium
           HTCC2143]
 gi|119450442|gb|EAW31676.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium
           HTCC2143]
          Length = 522

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 155/413 (37%), Positives = 229/413 (55%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L DQ R+ F  +  +   S+   +  G +  +   L K    I+ ++  SGLRGRGGA F
Sbjct: 103 LRDQQRLTFARVGIIDPLSIEHFLQHGGFQGLKHALTKKPAEIVVDITDSGLRGRGGAAF 162

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    SD   Y+V NADE + GT  DR IM  +P +LIEG +IA  A+GA  
Sbjct: 163 PTGIKWQTVLLTESD-QKYIVCNADEGDSGTFADRMIMESDPFSLIEGMIIAGLAVGATR 221

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+   ++ L+ A+        LG      G++  + V  GAGAYICGEETALL
Sbjct: 222 GYIYLREEYRLAQQVLEQAIHVAEEHHYLGEQVHGSGHEFRLEVRMGAGAYICGEETALL 281

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEGK+G  R KPP PA  GL+G PT VNNV S+A VP IL RG+ +Y  +G   +RGT
Sbjct: 282 DSLEGKRGMVRTKPPVPAVAGLFGKPTVVNNVLSLATVPVILARGSQFYKDYGLGRSRGT 341

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V +   VE +  I+  +L+    GG R G   + A+  GG     LP  Q  
Sbjct: 342 IPLQLAGNVRHAGLVEVAFGISLRKLVTYFGGGTRTG-KPIKAIQVGGPLGAYLPTAQ-W 399

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++G+ LG   V+V D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 400 DTPLDYEAFTDIGAILGHGGVVVFDDTVDMAEQAQFAMEFCAIESCGKCTPCRIGSTRGV 459

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+E++ +G  +++   LL ++ + +E  ++CA+G    +P+     NFR   
Sbjct: 460 EVLEKIRQGTQREKNSQLLIDLCETMELGSLCAMGGMTPFPVLSAFNNFREDF 512


>gi|71278646|ref|YP_270681.1| formate dehydrogenase subunit beta [Colwellia psychrerythraea 34H]
 gi|71144386|gb|AAZ24859.1| formate dehydrogenase, beta subunit [Colwellia psychrerythraea 34H]
          Length = 537

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 148/417 (35%), Positives = 230/417 (55%), Gaps = 9/417 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
              Q R+ F  +  +    + D +S G +  +     K    +++EVK SGLRGRGGA F
Sbjct: 114 FKSQQRLTFARVGIIDPIDVDDYISHGGFVGLTNAFAKTAQQLVDEVKESGLRGRGGAAF 173

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +     ++  Y+V NADE + GT  DR +M  +P  L+EG +IA  ++GA  
Sbjct: 174 PTGIKWQTVL-NEPEQQKYIVCNADEGDSGTFADRMLMEGDPLVLVEGMIIAGLSVGADQ 232

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+ +  + L  A+    A+G LG N     ++  + V  GAGAYICGEET+LL
Sbjct: 233 GYIYLRSEYPQAHDLLNKAISNAKAAGYLGDNICGTEHNFHLEVRLGAGAYICGEETSLL 292

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+A VP IL  G   Y  FG   +RGT
Sbjct: 293 ESLEGKRGLVRAKPPLPAIEGLFGQPTVVNNVISLASVPYILSHGGDSYRDFGMGRSRGT 352

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++     VE +  I+ +EL++++  G +     + +V  GG     LPA Q  
Sbjct: 353 LPIQLAGNIAQGGLVELAFGISLNELLQQYGNGCK-SKRAMRSVQVGGPLGAYLPAEQ-W 410

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ LG   ++V D + D+         F + ESCG+CTPCR G    +
Sbjct: 411 DTALDYEEFASIGAVLGHGGIVVFDDTVDMAAQARFAMEFCEVESCGKCTPCRIGAVRGV 470

Query: 360 RVMERLVKGIAQKRE----IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+++++ G   +++    +DLL+++   +E  ++CA+G    +P++  +K F    
Sbjct: 471 EVIDKIIDGNNDEQQRQDSVDLLHDLCDTMEFGSLCAMGGMTPFPVRSALKYFPDDF 527


>gi|86359439|ref|YP_471331.1| formate dehydrogenase, beta subunit protein [Rhizobium etli CFN 42]
 gi|86283541|gb|ABC92604.1| formate dehydrogenase, beta subunit protein [Rhizobium etli CFN 42]
          Length = 518

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 151/414 (36%), Positives = 220/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+     G+    SL D  + G    + + +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKEQTRLTFARCGITDPLSLGDYEAHGGLAGLRRAVSMTPVEIVKEVTDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    S    Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVL-DASGERKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y R E+      +  A+     +G+LG +    G   DI V  GAGAY+CGEETAL
Sbjct: 217 KGFVYTRSEYPHAIAVMSEAIGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ RGA++Y  FG   +RG
Sbjct: 277 LNSLEGKRGIVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMERGAAFYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V Y    E +  ++  +++++  GG R G   + AV  GG      P   +
Sbjct: 337 TIPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTRTGRP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  ++++ +GI  ++   LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VETVDKIARGIEPEKNRVLLGDLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508


>gi|316932167|ref|YP_004107149.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1]
 gi|315599881|gb|ADU42416.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1]
          Length = 518

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 218/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+   +S+ D  + G +  +++ L+   D II++V  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFARCGIVDPRSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG KW  + +       Y+  NADE + GT  DR +M  +P  +IEG  IA  A+GA  
Sbjct: 158 PTGTKWRTVAQAGRG-QKYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATR 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E++  A++    +G LG +     D  DI V  GAGAYICGEET++L
Sbjct: 217 GYIYIRSEYPHAVEAMNVAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+ GL+G PT +NNV + + VP IL  GA  Y+  G   +RGT
Sbjct: 277 ESLEGKRGTVRAKPPLPAHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K   + G++ +    E +  IT  ELI+   GG   G   + AV  GG      P   + 
Sbjct: 337 KPIQLGGNIKHGGLFEVAFGITLGELIDDIGGGTASGRP-VRAVQVGGPLGAYFPRA-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   V+V D + D+ K       F  HESCG+CTPCR G+    
Sbjct: 395 DTPFDYEAFAARSGMVGHGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGA 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +++++ G      I +L ++   ++  ++CALG  A  P+   + +F    
Sbjct: 455 ETVDKIIAGDKPAANIAVLEDLCNTMKFGSLCALGGLAPIPVLSALTHFPEDF 507


>gi|332249694|ref|XP_003273992.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 1 [Nomascus leucogenys]
 gi|332249696|ref|XP_003273993.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 2 [Nomascus leucogenys]
 gi|332249698|ref|XP_003273994.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like isoform 3 [Nomascus leucogenys]
          Length = 363

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 232/349 (66%), Positives = 279/349 (79%), Gaps = 1/349 (0%)

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           M K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A+IY+RGE
Sbjct: 1   MNKPSYGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGE 60

Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           F  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+ES+EGK+G
Sbjct: 61  FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH
Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           VN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P       +MD+D 
Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDA 240

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +VM R V+
Sbjct: 241 LVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVR 300

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+
Sbjct: 301 GDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERM 349


>gi|319779887|ref|YP_004139363.1| NADH dehydrogenase (quinone) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165775|gb|ADV09313.1| NADH dehydrogenase (quinone) [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 518

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/414 (36%), Positives = 220/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F         SL      G  + +   L      I+ EV  SGLRGRGGAG
Sbjct: 98  FLAKQTRLTFARCGVTDPLSLESYKKHGGLNGLMNALALTPAAIVAEVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVLDTAGD-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMTIAGIATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+YVR E+     ++  AV+    +G+LG++     +  D+ +  GAGAY+CGEETAL
Sbjct: 217 KGFVYVRSEYPHAVAAMNKAVEIARKAGVLGASVLGSPHAFDMEIRVGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L+SLEGK+G  R KPP PA+ GL+G PT +NNV S+A VP I+ +GA++Y  FG   +RG
Sbjct: 277 LDSLEGKRGMVRAKPPLPAHKGLFGKPTVINNVISLASVPVIMDKGAAFYKDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E +  +T  E++++  GG   G   + AV  GG      P   +
Sbjct: 337 TIPVQIAGNVKFAGLFEAAFGMTLGEIVDEIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEAFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  +++L  GI  ++ + L+ ++   ++  ++CALG    +P+   I +F    
Sbjct: 455 VETIDKLAAGIEPEKNLALVTDLCNTMKFGSLCALGGFTPYPVMSSITHFPDDF 508


>gi|118579913|ref|YP_901163.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118502623|gb|ABK99105.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
          Length = 570

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 147/431 (34%), Positives = 233/431 (54%), Gaps = 11/431 (2%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWIINEVKASGLRGRGGA 58
             T Q R +      +  +SL++ ++ G +    K  LE   + I  EV ASGLRGRGG 
Sbjct: 128 FYTRQTRFVLKECGWIDPESLNEYIATGGYGGAIKAFLEMTPEEICREVIASGLRGRGGG 187

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW       ++   Y++ N DE +PG   +R +M   PH +IEG +IA+ AIG+
Sbjct: 188 GFPTGRKWEIARMQPAE-KKYVICNGDEGDPGAFMNRSVMEGNPHAVIEGLMIAARAIGS 246

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
              ++YVR E+    + +  AV++  A+G+LG+N    G  +   +   AGA++CGEETA
Sbjct: 247 DEVYVYVRAEYPLAVKRMNMAVEDAEAAGILGNNIFGTGKRMKCTILPSAGAFVCGEETA 306

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           +L S+EG +G P  KPPFPA  GL G PT +NNVE++A +P IL  GA  +   G   + 
Sbjct: 307 MLASIEGLRGTPVPKPPFPAQCGLRGKPTIINNVETLAQIPRILLAGAQSFKKMGTPASP 366

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN-----LLAVIPGGSSVPC 292
           GTK F+++GHV     +E     T  E++    GG+             AV  GG S  C
Sbjct: 367 GTKTFALTGHVVNTGLIEVPFGTTLREIVFSIGGGVTTDEGTPTDGMFKAVQVGGPSGGC 426

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           LP   +    +D+D L   G+ +G+  ++VM++ T ++        F + ESCG+C  CR
Sbjct: 427 LPPE-LLDMPLDFDSLLSAGAMVGSGGLVVMNQQTCMVSVARFFMEFTQRESCGKCVLCR 485

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           EGT  ++ +++ +++G A  + +D++  ++K+I+  ++C LG  A   +   +K FR   
Sbjct: 486 EGTRQLLVLLDDVIEGRATLQTLDIMELLAKSIKLGSLCGLGKTAPNAVLSTLKYFRAEF 545

Query: 413 EERIDQYHRCN 423
           E  +    +C 
Sbjct: 546 ESHVVD-KQCP 555


>gi|39933810|ref|NP_946086.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris CGA009]
 gi|39647657|emb|CAE26177.1| NAD-dependent formate dehydrogenase beta subunit [Rhodopseudomonas
           palustris CGA009]
          Length = 518

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 148/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+   +S+ D  + G +  +++ L+   D II++V  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFARCGIVDPRSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG KW  + +       Y+  NADE + GT  DR +M  +P  +IEG  IA  A+GA  
Sbjct: 158 PTGTKWRTVAQAGRG-QKYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E++ AA++    +G LG +     D  DI V  GAGAYICGEET++L
Sbjct: 217 GYIYIRSEYPHAVEAMNAAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+ GL+G PT +NNV + + VP IL  GA  Y+  G   +RGT
Sbjct: 277 ESLEGKRGTVRAKPPLPAHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K   + G++ +    E +  IT  EL+++  GG       + AV  GG      P   + 
Sbjct: 337 KPIQLGGNIKHGGLFEVAFGITLGELVDEIGGGT-LSGRPVRAVQVGGPLGAYFPRA-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   V+V D + D+ K       F  HESCG+CTPCR G+    
Sbjct: 395 DTPFDYEAFAARSGMVGHGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGA 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +++++ G      I +L ++   ++  ++CALG  A  P+   + +F    
Sbjct: 455 ETVDKIIAGDRPAANIAVLEDLCNTMKFGSLCALGGLAPIPVLSALTHFPEDF 507


>gi|14043258|gb|AAH07619.1|AAH07619 Unknown (protein for IMAGE:3355366) [Homo sapiens]
          Length = 354

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 228/343 (66%), Positives = 277/343 (80%), Gaps = 1/343 (0%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A+IY+RGEF  E  +LQ
Sbjct: 1   KYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQ 60

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+ES+EGK+G+PRLKPPFP
Sbjct: 61  VAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFP 120

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE
Sbjct: 121 ADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEE 180

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P       +MD+D L +  +GLG
Sbjct: 181 EMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLG 240

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           TAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +VM R V+G A+  EID
Sbjct: 241 TAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEID 300

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 301 SLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 343


>gi|332529346|ref|ZP_08405307.1| NADH dehydrogenase (quinone) [Hylemonella gracilis ATCC 19624]
 gi|332041144|gb|EGI77509.1| NADH dehydrogenase (quinone) [Hylemonella gracilis ATCC 19624]
          Length = 526

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 11/419 (2%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q+R+     G+    SL D  +   +  + K LE     ++ +V  SGLRGRGGA F
Sbjct: 101 LKNQERLTFARMGITDPVSLEDYQAHQGYAGLRKALEIKPTDVVQQVLDSGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +D   Y+V NADE + GT  DR  M  +P+ LIEG  IA+ A GA  
Sbjct: 161 PAGIKWKTVAAAQAD-QKYVVCNADEGDSGTFSDRMTMEGDPYMLIEGMTIAAMATGATR 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+    ++L  A+     +G LG N    G    + V  GAG+Y+CGEETA+L
Sbjct: 220 GYIYVRSEYPHAIDNLNEAIARATKAGFLGDNVLGSGRAFHLEVRKGAGSYVCGEETAML 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV + A VP IL RGA++Y+ +G   ++GT
Sbjct: 280 ESIEGKRGIVRAKPPIPALQGLFGKPTVINNVITYASVPIILARGAAFYANYGMGRSKGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE++  +T  +L+ ++ GG   G   + A+  GG     +P  Q  
Sbjct: 340 LPIQLAGNIKHGGLVEKAFGVTLRQLVFEYGGGTASGRP-VKAIQVGGPLGAYVP-EQHW 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+G   +G+ +G   ++V D ++D+ K       F   ESCG+CTPCR G+   +
Sbjct: 398 DLPMDYEGWTAVGATVGHGGIVVHDDTSDMRKLARYAMEFCAIESCGKCTPCRIGSTRGV 457

Query: 360 RVMERLVKGIAQ------KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++RL +   Q       +++ LL ++   +   ++CA+G    +P+   + ++    
Sbjct: 458 EVIDRLAEADRQGKPEVKAQQVKLLRDLCDTMVNGSLCAMGGMTPFPVLSALNHYPQDF 516


>gi|325673381|ref|ZP_08153072.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707]
 gi|325555402|gb|EGD25073.1| NADH-quinone oxidoreductase subunit F [Rhodococcus equi ATCC 33707]
          Length = 688

 Score =  434 bits (1117), Expect = e-119,   Method: Composition-based stats.
 Identities = 207/428 (48%), Positives = 263/428 (61%), Gaps = 18/428 (4%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            D+DR           +L        +  + K L    D +I  VK +GLRGRGGAGF T
Sbjct: 255 WDEDR---------SWTLDAYHGHDGYTALRKALRMNPDEVIQTVKDAGLRGRGGAGFPT 305

Query: 63  GMKWSFMPKVCSDR----PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GMKWSF+P+  +      PHYLVVNADESEPGTCKD  +M   PHTLIEG VIA++AI A
Sbjct: 306 GMKWSFIPQDPATDGTAKPHYLVVNADESEPGTCKDIPLMFATPHTLIEGVVIAAYAIRA 365

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             AF+YVRGE +     LQAAV E Y +G LG +    GYD+DI+VH GAGAYICGEETA
Sbjct: 366 AQAFVYVRGEVVPVLRRLQAAVAEAYDAGYLGRDILGSGYDLDIVVHAGAGAYICGEETA 425

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           LL+SLEG++GQPRL+PPFPA  GLY  PT VNNVESIA VP I+ RG  W+ G G E + 
Sbjct: 426 LLDSLEGRRGQPRLRPPFPAVAGLYASPTVVNNVESIASVPPIILRGPEWFRGMGSEASP 485

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G  L+S+SGHV  P   E  + IT  +L++   G        L    PGGSS P L    
Sbjct: 486 GFTLYSLSGHVTRPGQYEAPLGITLRQLLDVAGG--VRAGHRLKFWTPGGSSTPLLTDEH 543

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DY+G+   GS LGT A+ + D +T I++ + R + FY HESCG+CTPCREGT W
Sbjct: 544 L-DVPLDYEGVAGAGSMLGTKALQIFDETTCIVRVVLRWTQFYAHESCGKCTPCREGTYW 602

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +++++ERL +G     +++ L +VS  I G++ CALGD AA PI   +K FR        
Sbjct: 603 LVQILERLERGEGSVEDLEKLLDVSDTILGKSFCALGDGAASPIMSSLKYFRDEYVAH-A 661

Query: 418 QYHRCNFQ 425
               C F 
Sbjct: 662 GGRGCPFD 669


>gi|192289232|ref|YP_001989837.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1]
 gi|192282981|gb|ACE99361.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1]
          Length = 518

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 148/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+   +S+ D  + G +  +++ L+   D II++V  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFARCGIVDPRSIDDYRAHGGYRGLERALKMSSDAIIDDVVKSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG KW  + +       Y+  NADE + GT  DR +M  +P  +IEG  IA  A+GA  
Sbjct: 158 PTGTKWRTVAQAGRG-QKYICCNADEGDSGTFADRMLMEGDPFMIIEGMTIAGIAVGATR 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E++ AA++    +G LG +     D  DI V  GAGAYICGEET++L
Sbjct: 217 GYIYIRSEYPHAVEAMNAAIEAARRTGYLGEHICHSTDSFDIEVRVGAGAYICGEETSML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+ GL+G PT +NNV + + VP IL  GA  Y+  G   +RGT
Sbjct: 277 ESLEGKRGTVRAKPPLPAHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGKSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K   + G++ +    E +  IT  EL+++  GG       + AV  GG      P   + 
Sbjct: 337 KPIQLGGNIKHGGLFEVAFGITLGELVDEIGGGT-LSGRPVRAVQVGGPLGAYFPRA-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   V+V D + D+ K       F  HESCG+CTPCR G+    
Sbjct: 395 DTPFDYEAFAARSGMVGHGGVVVFDDTVDMAKQARFAMEFCAHESCGKCTPCRIGSTRGA 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +++++ G      I +L ++   ++  ++CALG  A  P+   + +F    
Sbjct: 455 ETVDKIIAGDRPAANIAVLEDLCNTMKFGSLCALGGLAPIPVLSALTHFPEDF 507


>gi|53804300|ref|YP_113850.1| formate dehydrogenase subunit beta [Methylococcus capsulatus str.
           Bath]
 gi|53758061|gb|AAU92352.1| formate dehydrogenase, beta subunit [Methylococcus capsulatus str.
           Bath]
          Length = 516

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 151/413 (36%), Positives = 223/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q+R+     G+     L D ++ G +  +   L      I+ EV ASGLRGRGGA F
Sbjct: 98  LKNQERLTFARVGITDPVCLEDYLAHGGYRGLRNALAMEPAAIVEEVTASGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +    Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA  
Sbjct: 158 PTGIKWKTVLNAPAG-QKYVVCNADEGDSGTFSDRMIMEGDPFVLIEGMTIAGLAVGATQ 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+     +L  A++    +G LG +    G    + V  GAGAY+CGEETALL
Sbjct: 217 GYIYLRIEYPHAGVALNQAIEAAIQAGYLGDDILGSGKRFQLEVRLGAGAYVCGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL +G  +Y+ +G   +RGT
Sbjct: 277 ESLEGKRGMVRFKPPLPAIEGLFGQPTVINNVISLASVPIILDKGGKYYADYGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V  P  +E++  +T  EL+  + GG   G   + AV  GG     +P  Q  
Sbjct: 337 LPLQLAGNVKRPGLIEKAFGMTLRELLYDYGGGSASGRP-IRAVQVGGPLGSYMPESQ-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    + + LG   V+V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPLDYESFSAIWAVLGHGGVVVFDDTVDMAKMARYAMEFCALESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R++    + + + LL ++   +   ++CALG    +P+   + +F    
Sbjct: 455 EVIDRIIDDRDRAKNLALLRDLGDTMLAGSLCALGGMTPYPVLSALNHFPEDF 507


>gi|15890286|ref|NP_355958.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens
           str. C58]
 gi|15158483|gb|AAK88743.1| NADH ubiquinone oxidoreductase chain F [Agrobacterium tumefaciens
           str. C58]
          Length = 518

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 149/414 (35%), Positives = 222/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+ F         SL D  +      ++K +      I+ +V  SGLRGRGGAG
Sbjct: 98  FLKNQTRLTFARCGVTDPLSLEDYRNYQGMKGLEKAVTMEPLAIVAQVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA 
Sbjct: 158 FPTGIKWKTVADARAD-QKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLAVGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             FIY R E+    + ++ A++     G+LGS+    G   D+ V  GAGAY+CGEET+L
Sbjct: 217 KGFIYTRSEYPYAIKVMEKAIEIARREGILGSSVLGSGRAFDMEVRMGAGAYVCGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA  GL+G PT VNNV S+A +P I+ RGA++Y  FG   + G
Sbjct: 277 LNSLEGKRGTVRAKPPLPALQGLFGKPTVVNNVISLASIPVIMDRGAAFYRDFGVGRSHG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++ Y    E +  +T  +L+    GG   G   + AV  GG      P   +
Sbjct: 337 TIPIQLAGNIRYGGLYETAFGLTLGQLVNDIGGGTITGRP-VKAVQVGGPLGAYFPVS-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              I DY+     G  +G A ++V D + D++        F   ESCG+CTPCR G+   
Sbjct: 395 FDTIFDYEAFTAAGGLIGHAGIVVFDDTADMLHQARFALEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  ++++  GI +++   LL ++ + ++  ++CALG    +P+   +++F    
Sbjct: 455 VETVDKIALGIEREKNTALLEDLCETMKFGSLCALGGFTPYPVMSALRHFPQDF 508


>gi|320532546|ref|ZP_08033355.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320135240|gb|EFW27379.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 443

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 197/415 (47%), Positives = 249/415 (60%), Gaps = 15/415 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQ+R           +L   +  G ++ + +      + +I  +K SGLRGRGGAGF 
Sbjct: 20  LWDQER---------SWTLQAYLDHGGYEGLKQAKTLSSEDLITLIKDSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+P V    P YLVVNADESEPGTCKD   +   P  LIEG  I S AIG   A
Sbjct: 71  TGLKWSFLPPVDGG-PRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179
           F+Y+RGE       L +AV E   SGLL +   L     + I  H GAGAYICGEETALL
Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLLDTGFGLDGQQPLRITAHAGAGAYICGEETALL 189

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEG++G PRLKPPFPA  GLY  PT VNNVE+IA VP IL RGA WYS  G E ++G 
Sbjct: 190 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPEILARGAQWYSTMGTEKSKGH 249

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
            +FS+SGHV +P   E    IT  ELIE   G        L   +PGGSS P     ++ 
Sbjct: 250 GIFSVSGHVAHPGQYEAPFGITMRELIELSGG--IRPGHELKFWVPGGSSTPIFGPDEL- 306

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ + E GS LGT A+ V D +  +++ + R + FY+HESCG+CTPCREGT WM 
Sbjct: 307 DVPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMR 366

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           ++M RL  G     +++ L  ++ NI GR+ CALGDA+A P+   IK FR   E 
Sbjct: 367 QIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFEA 421


>gi|126665578|ref|ZP_01736560.1| formate dehydrogenase, beta subunit [Marinobacter sp. ELB17]
 gi|126630206|gb|EBA00822.1| formate dehydrogenase, beta subunit [Marinobacter sp. ELB17]
          Length = 519

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 150/415 (36%), Positives = 225/415 (54%), Gaps = 4/415 (0%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+     + D ++ G +  + K        I++EVKASGLRGRGGA F
Sbjct: 100 LQQQQRLTFARIGITDPICIEDYIAHGGFAGLKKAAALTTQGIVDEVKASGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +     ++  Y+V NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 160 PAGIKWQTVLDEPQNQQKYVVCNADEGDSGTFADRLVMECDPYMLIEGMTIAGLAVGATL 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIYVR E++  ++ L  A+      G LG N    G    + V  GAGAYICGEET+LL
Sbjct: 220 GFIYVRSEYLLSQKMLDEAIRRAEVLGYLGDNVCGNGRSFRLEVRLGAGAYICGEETSLL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+A VP I+  G   Y+ +G   + GT
Sbjct: 280 ESLEGKRGLVRSKPPLPAIKGLFGQPTVVNNVLSLAAVPYIMAHGGKAYADYGMGRSLGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   +E +   +  +++E   GG       + AV  GG  +  LP  Q  
Sbjct: 340 LPIQLAGNIKHGGLIELAFGASLRKVLEDFGGGT-FTGRPMRAVQVGGPLMAYLPESQ-W 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+   ++G+G+G   V+  D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 398 DTPMDYEAFAKLGAGIGHGGVVAFDDTVDMGEQARFAMEFCAVESCGKCTPCRIGSVRGV 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            V++R+  G  +   + LL E+ + +   ++CA+G    +P+Q ++K+F   +  
Sbjct: 458 EVIDRIRAGEHRDDNLVLLQELCETMVDGSLCAMGGMTPFPVQSVMKHFPEDLMA 512


>gi|224825580|ref|ZP_03698685.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002]
 gi|224602501|gb|EEG08679.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002]
          Length = 514

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 225/413 (54%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q+R+     G+    SL+D  +   +  + + L      I+ EV  SGLRGRGGA F
Sbjct: 98  LKNQERLTFARVGITDPLSLADYQAHEGFAGLKRALSMDGAAIVQEVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +    Y+V NADE + GT  DR +M  +P  LIEG  IA  A+GA  
Sbjct: 158 PTGIKWRTVALAEA-AQKYVVCNADEGDSGTYSDRMVMEDDPFMLIEGMTIAGLAVGATQ 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+    + L  A+     +G LG N    G    + V   AGAY+CGEETA+L
Sbjct: 217 GYIYVRSEYPHSFDVLNQAIRLAEDAGFLGENILASGKCFKLDVRKAAGAYVCGEETAML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL RGA++Y+ +G   ++GT
Sbjct: 277 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVISLASVPVILARGAAFYADYGMGRSKGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ Y   VE++  +T  EL+    GG   G   + AV  GG     LP  Q  
Sbjct: 337 LPFQLAGNLKYGGLVEKAFGLTLRELLHDFGGGSASGRP-IRAVQVGGPLGAYLPESQ-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   ++  D + D+++       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPLDYEAFAALGAVVGHGGIVAFDDTVDMVEQARYAMEFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+ K   + ++I LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 455 EVIQRIQKDEKRPQQIALLRDLCDTMLHGSLCAMGGMTPYPVLSALNHFPEDF 507


>gi|307689027|ref|ZP_07631473.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 436

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 138/359 (38%), Positives = 209/359 (58%), Gaps = 5/359 (1%)

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KW    +       Y++ NADE +PG   D  I+  +PH +IEG +IA+++IG+   +IY
Sbjct: 17  KWQL-ARDSIGVKKYVICNADEGDPGAFMDESILVGDPHKVIEGMIIAAYSIGSDQGYIY 75

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           VR E+    + L+ A+D+    G LG       +  +I +  GAGA++CGEETAL+ S+E
Sbjct: 76  VRAEYPLAIKRLEKAIDQAKQYGFLGKEMFGEVFSFNIEIKVGAGAFVCGEETALIASIE 135

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+G PR KPPFPA  GL+G PT +NNVE+ A +P I+ RGA ++   G + ++GTK+FS
Sbjct: 136 GKRGMPRSKPPFPAEEGLWGKPTNINNVETYANIPIIINRGAEFFRSIGTKGSKGTKVFS 195

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           ++G +     VE  M I+  E+I    GG+        AV  GG S  CL   ++    +
Sbjct: 196 LTGKIENTGLVEVPMGISMKEIIYDIGGGVPNNRK-FKAVQIGGPSGGCLTEEKL-DLPV 253

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L ++G+ +G+  ++VMD    ++        F   ESCG+CTPC EGT  M+ ++E
Sbjct: 254 DYDSLLQVGAIMGSGGLVVMDEDNCMVDMARFFLNFTVEESCGKCTPCSEGTRRMLEILE 313

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           ++V G A+  ++D L  ++K I+   +C LG AA  PI   +K FR   EE I +Y +C
Sbjct: 314 KIVNGRAKIEDLDQLENLAKTIKDTALCGLGQAAPNPILSTLKYFRHEYEEHI-KYKKC 371


>gi|329944207|ref|ZP_08292466.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328530937|gb|EGF57793.1| NADH oxidoreductase, F subunit [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 443

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/415 (47%), Positives = 247/415 (59%), Gaps = 15/415 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQ+R           +L   +  G ++ + K      + +I  +K SGLRGRGGAGF 
Sbjct: 20  LWDQER---------SWTLQAYLDHGGYEGLKKAKTLSSEDLITLIKDSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+P V    P YLVVNADESEPGTCKD   +   P  LIEG  I S AIG   A
Sbjct: 71  TGLKWSFLPPVDGG-PRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179
           F+Y+RGE       L  AV E   SGLL +   L     + I  H GAGAYICGEETALL
Sbjct: 130 FVYLRGEVPHVYRRLLGAVREATESGLLDTGFGLDGQQRLRITAHAGAGAYICGEETALL 189

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEG++G PRLKPPFPA  GLY  PT VNNVE+IA VP IL RGA WYS  G E ++G 
Sbjct: 190 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSKGH 249

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
            +FS+SGHV  P   E    IT  ELIE   G        L   +PGGSS P     ++ 
Sbjct: 250 GIFSVSGHVARPGQYEAPFGITMRELIELSGG--IRPGHELKFWVPGGSSTPIFGPDEL- 306

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ + E GS LGT A+ V D +  +++ + R + FY+HESCG+CTPCREGT WM 
Sbjct: 307 DVPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMR 366

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           ++M RL  G     +++ L  ++ NI GR+ CALGDA+A P+   IK FR   E 
Sbjct: 367 QIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFEA 421


>gi|326772147|ref|ZP_08231432.1| NADH oxidoreductase (quinone), F subunit [Actinomyces viscosus
           C505]
 gi|326638280|gb|EGE39181.1| NADH oxidoreductase (quinone), F subunit [Actinomyces viscosus
           C505]
          Length = 443

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/415 (47%), Positives = 249/415 (60%), Gaps = 15/415 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQ+R           +L   +  G ++ + K      + +I  +K SGLRGRGGAGF 
Sbjct: 20  LWDQER---------SWTLQTYLDHGGYEGLKKAKTLSCEELIGLIKDSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+P V    P YLVVNADESEPGTCKD   +   P  LIEG  I S AIG   A
Sbjct: 71  TGLKWSFLPPVDGG-PRYLVVNADESEPGTCKDIPTIMSNPQALIEGIAITSRAIGGDHA 129

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179
           F+Y+RGE       L +AV E   SGLL +   L     + I  H GAGAYICGEETALL
Sbjct: 130 FVYLRGEVPHVYRRLLSAVREATESGLLDTGFGLDGQQRLRITAHAGAGAYICGEETALL 189

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEG++G PRLKPPFPA  GLY  PT VNNVE+IA VP IL RGA WYS  G E ++G 
Sbjct: 190 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPAILARGAQWYSTMGTEKSKGH 249

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
            +FS+SGHV +P   E    IT  ELIE   G        L   +PGGSS P     ++ 
Sbjct: 250 GIFSVSGHVAHPGQYEAPFGITMRELIELSGG--IRPGHELKFWVPGGSSTPIFGPDEL- 306

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ + E GS LGT A+ V D +  +++ + R + FY+HESCG+CTPCREGT WM 
Sbjct: 307 DVPLDYESVAEAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMR 366

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           ++M RL  G     +++ L  ++ NI GR+ CALGDA+A P+   IK FR   E 
Sbjct: 367 QIMLRLEAGRGLPGDVEKLESIASNIAGRSFCALGDASATPVLTGIKRFREEFEA 421


>gi|288959751|ref|YP_003450091.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510]
 gi|288912059|dbj|BAI73547.1| formate dehydrogenase, beta subunit [Azospirillum sp. B510]
          Length = 526

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 222/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
              Q+R+ F     +   S+ D  + G +  ++  L   +  I+  V  SGLRGRGGAGF
Sbjct: 102 FKKQERLTFARCGIIDPLSVEDYRAHGGFRGLENALAMSQAEIVKVVTDSGLRGRGGAGF 161

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+ + +  +D   ++  NADE + GT  DR I+  +P  LIEG  IA+ A+GA  
Sbjct: 162 PTGIKWNTVMQAKAD-EKFVCCNADEGDSGTFADRMIIEGDPFCLIEGMTIAAIAVGATS 220

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+     +L+ A+   Y  G LG N         + V  GAGAYICGEETA+L
Sbjct: 221 GYVYMRSEYPHATATLRHAIKLAYDEGWLGDNIHGTSRTFHLDVRVGAGAYICGEETAML 280

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+  VP IL RGA +Y  FG   +RGT
Sbjct: 281 ESLEGKRGMVRAKPPLPALEGLFGKPTVVNNVLSLCSVPIILDRGAEYYRDFGVGRSRGT 340

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE++  IT  EL+    GG   G   + AV  GG     LP  Q  
Sbjct: 341 LPFQLAGNLKHGGIVEKAFGITLHELLYDFGGGTITGRP-IRAVQVGGPLGAYLPPSQ-F 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+      + +G   ++V D S D+ +       F   ESCG+CTPCR G+   M
Sbjct: 399 DLPKDYEAFAAQEAMVGHGGIVVFDDSVDMARQARFAMEFCVAESCGKCTPCRIGSTRGM 458

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +++++ G      ++LL ++   +   ++CA+G    +P++  +K+F    
Sbjct: 459 ETLDKIIAGRNVDANLELLADLCDVMVDGSLCAMGGMTPYPVRSAVKHFPEDF 511


>gi|283778529|ref|YP_003369284.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068]
 gi|283436982|gb|ADB15424.1| NADH dehydrogenase (quinone) [Pirellula staleyi DSM 6068]
          Length = 450

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 183/425 (43%), Positives = 251/425 (59%), Gaps = 17/425 (4%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +   +   +  +       G +  + K+L+   + +   VK+SGLRGRGGAGF TG+KW+
Sbjct: 8   LLAQVGKPESYTRKVYERDGGYSALKKVLKMTPNDVKETVKSSGLRGRGGAGFPTGLKWT 67

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F+P+       Y  +NADESEPGT  +R +M  +PH ++EG +IA FA  A  A+ Y+R 
Sbjct: 68  FLPQNHPGPI-YFCLNADESEPGTFNNRILMEDDPHQVLEGIIIACFATQARAAYFYMRC 126

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    E ++ A++ECY +G LG N    GY +DI +H GAGAYICGEET L+ESLEGK+
Sbjct: 127 EYPTAYERVKRAIEECYEAGYLGENILGSGYTLDIHLHRGAGAYICGEETGLIESLEGKR 186

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR---------ENNR 237
             PR+KPPFPA  G +  PT VNNVE+ A V  I R G  W+   G            + 
Sbjct: 187 AWPRIKPPFPAVEGAFRKPTVVNNVETCACVTQIFRNGVDWFKSIGIAPDPNNPRDAGSY 246

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G KL+ +SGHVN P   E  + IT  +LI    GG+  G     AVIPGG S+  L   +
Sbjct: 247 GPKLYCLSGHVNKPGCYEAPLGITVKDLINDFGGGVWKGRKA-KAVIPGGISMGLLTGDE 305

Query: 298 MRGAIMDYDGLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           +    +D++G  + G  GLGTAAV+VMD  T ++  +     F+ HESCGQCTPCREGT 
Sbjct: 306 LH-CPLDFNGPGKFGCLGLGTAAVVVMDDQTSMVDFLLNSCRFFSHESCGQCTPCREGTS 364

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKN---IEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           W  R+M R+  G  + +++DLL E+ +    + G TIC L D AAWPI+  IK FR  +E
Sbjct: 365 WATRMMTRIKHGQGRLKDLDLLAEIGETIGIMPGSTICGLADGAAWPIKNCIKKFRGELE 424

Query: 414 ERIDQ 418
           E I +
Sbjct: 425 EFIKR 429


>gi|77917824|ref|YP_355639.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77543907|gb|ABA87469.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 425

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 176/428 (41%), Positives = 252/428 (58%), Gaps = 7/428 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59
           M T +  +F N    Q   L      G +  + K L+      +  EVKASGLRGRGGAG
Sbjct: 1   MRTCEPLLFKNRRAGQTVFLEGYRKTGGYRGLQKALQDMTPASVREEVKASGLRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWSF P   +    YLV N DE EPGT KDR ++  +PH L+EG +I+ +A+G  
Sbjct: 61  FPTGVKWSFFPSDNAG-EKYLVCNGDEMEPGTFKDRQLLLADPHHLLEGVIISCYALGIG 119

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+I++R  + +   +L+ A+ E   +GLLG N    G+  ++ VH  AG YICGEETAL
Sbjct: 120 TAYIFLRDAYRQCAANLERAIAEAEEAGLLGDNILGSGFCCEVHVHRSAGRYICGEETAL 179

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNR 237
           L SLEG +  PR KPPFPA  GL+G PT +NN+E++A +P I+  GA+WY G    E   
Sbjct: 180 LNSLEGLRPNPRSKPPFPAVKGLFGKPTALNNIETLANIPHIITGGAAWYKGLALTEQGA 239

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL+ ++GH+  PC VE  + +   ELI    GG+     +  A +PGG+S P L A  
Sbjct: 240 GTKLYGLAGHLETPCCVELPLGMPLGELIRDFGGGVWQN-RSFKACLPGGASTPYLTAEH 298

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +DY+ L+++G+ LGT  V+V D  T ++     L  F+  ESCG CTPCR+G   
Sbjct: 299 M-DVALDYEPLEQVGTRLGTGGVVVFDDRTCMVAVTLNLLRFFARESCGWCTPCRDGLPL 357

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ERL +G   + ++ +L E   +I GR+ CAL   A  P+ GL+++F   +E+ + 
Sbjct: 358 VCWLLERLERGEGSREDLAMLREQLLHINGRSFCALALGAMGPVDGLLRHFAEELEDHV- 416

Query: 418 QYHRCNFQ 425
           +  RC FQ
Sbjct: 417 RLGRCPFQ 424


>gi|260466532|ref|ZP_05812721.1| NADH dehydrogenase (quinone) [Mesorhizobium opportunistum WSM2075]
 gi|259029681|gb|EEW30968.1| NADH dehydrogenase (quinone) [Mesorhizobium opportunistum WSM2075]
          Length = 518

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 147/414 (35%), Positives = 215/414 (51%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+     G+    SL    S G    +   +      I+ +V  SGLRGRGGAG
Sbjct: 98  FLAKQTRLTFARCGINDPLSLDAYKSLGGLKGLQNAVAMSPADIVKQVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     D   Y+V NADE +  T  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVLDTTGD-RKYIVCNADEGDSATFADRMIMEGDPFVLIEGMAIAGIATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y+R E+      +  AV+    +G+LG+N        D+ +  GAGAY+CGEET+L
Sbjct: 217 KGFVYIRSEYPHAVAVMNKAVEVARKAGVLGTNVLGSPNAFDMEIRVGAGAYVCGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA  GL+G PT +NNV S+A VP ++ +GA++Y  FG   +RG
Sbjct: 277 LNSLEGKRGVVRAKPPLPAIQGLFGKPTVINNVISLASVPVVMDKGAAFYKDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E +  +T  E+++   GG   G   + AV  GG      P   +
Sbjct: 337 TIPIQIAGNVKHGGLFETAFGLTLGEIVDDIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+   +    +G A + V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEEFAKRDGLIGHAGITVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  ++RL  GI  ++ + L+ ++   ++  ++CALG    +P+   I +F    
Sbjct: 455 VETIDRLAAGIEPEKNLALVTDLCNTMKFGSLCALGGFTPYPVMSSITHFPEDF 508


>gi|162452499|ref|YP_001614866.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
 gi|161163081|emb|CAN94386.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
          Length = 450

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 194/444 (43%), Positives = 260/444 (58%), Gaps = 25/444 (5%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML     +  N     G  L+     G +    + L   R+ ++ E+KA+ +RGRGGAGF
Sbjct: 1   MLRLTRYLTKNYDTPDGHKLAVYEKGGGYQQAKRALGMTREALVEEMKAANIRGRGGAGF 60

Query: 61  STGMKWSFMP-KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           + G+KWSFMP     +RPHYLV+NADE EPGT KDR +M   PH ++EGC+I  F IGAH
Sbjct: 61  AMGVKWSFMPWPPKPERPHYLVINADEGEPGTFKDRTLMEKNPHAVVEGCIIGCFGIGAH 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IYVR E    +  L  A++E  A G LG     + Y V++ VH GAGAYICGEET+L
Sbjct: 121 AAYIYVRDELHLSKARLWGAIEEARAKGYLGKRPFGIDYPVEVYVHTGAGAYICGEETSL 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE---N 235
           L SLEGK+G+PRLKPPFPA  G +G PTTVNN+E+IA VPT L  G   +S         
Sbjct: 181 LNSLEGKRGEPRLKPPFPAQFGAFGMPTTVNNLETIAAVPTALELGGENFSKLSSLHHLK 240

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           + G +LF +SGHVN P   E ++ +T  +LI ++ GG++ G   LL VIPGGSS P L A
Sbjct: 241 DGGCRLFGVSGHVNNPGIFEAAVGVTLRDLIYEYGGGVKHG--KLLGVIPGGSSCPILRA 298

Query: 296 GQM------------------RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
            ++                      +  D  + +G+ LGT   IV+      + A+  L 
Sbjct: 299 DEVVNAPSDKSPLHPWHGQSVLDVPLGVDTFRALGTMLGTCCAIVLSDKACPVLAMHNLM 358

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            FY+HESCGQCTPCREG+ W+ R+++R+V G     E+D L+E++ NI G TICA G+  
Sbjct: 359 RFYRHESCGQCTPCREGSAWIHRILDRIVHGEGTIEELDRLHEIADNIMGNTICAFGEGT 418

Query: 398 AWPIQGLIKNFRPLIEERIDQYHR 421
           A P  G ++ FR   E  I    R
Sbjct: 419 AMPALGFLRKFRKEFEAYIQTKGR 442


>gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
 gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
          Length = 780

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 151/424 (35%), Positives = 241/424 (56%), Gaps = 6/424 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
            L+ Q R+ T  YGL     + + ++RG ++ + K +  K R  II+ +  SGLRGRGG 
Sbjct: 292 FLSGQKRVSTEGYGLMSPLDIDEYIARGGFEALKKAITSKSRQEIIDTILRSGLRGRGGG 351

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW  +         Y++ N DE +PG   DR ++   P  +IEG +IA +A+GA
Sbjct: 352 GFLTGRKWELVA-ASDQPEKYVICNGDEGDPGAFMDRILLESYPLRVIEGMIIAGYAVGA 410

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
                Y+R E+ +     + A++ C     +G +     +  +I +  GAGA++CGEETA
Sbjct: 411 KEGIFYIRAEYPQAVIRTRKAIELCRERNWVGDHIFGSDFSFEISIFEGAGAFVCGEETA 470

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PP+PA  GL   PT +NNVE+++ V  I+  GA  Y   G EN++
Sbjct: 471 LIASIEGERGFPRQRPPYPAVEGLNKRPTLINNVETLSQVSYIVNHGADEYRKIGTENSK 530

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+F+++G V +   +E  M  T +++IE   GG+ GG + L AV  GG S  C+PA  
Sbjct: 531 GTKVFALAGKVRHGGLIEVPMGTTLNQIIEDIGGGVEGG-EKLRAVQIGGPSGGCIPA-H 588

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A +D+D L +MG+ +G+  ++V+  S  ++        F  +ESCG+CT CR G   
Sbjct: 589 LCDAKVDFDALIQMGAIMGSGGMVVLSESNCMVDVARYFLAFTCNESCGKCTFCRVGIRR 648

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+ ++++L  G A+  +ID L E++ +++   +C LG  A  P+   +K FR   EE + 
Sbjct: 649 MLDILDKLCTGKAEMADIDKLEELALSVKKAALCGLGKTAPNPVLATLKYFREEYEEHVR 708

Query: 418 QYHR 421
              R
Sbjct: 709 GICR 712


>gi|322436008|ref|YP_004218220.1| NADH dehydrogenase (quinone) [Acidobacterium sp. MP5ACTX9]
 gi|321163735|gb|ADW69440.1| NADH dehydrogenase (quinone) [Acidobacterium sp. MP5ACTX9]
          Length = 442

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 194/418 (46%), Positives = 261/418 (62%), Gaps = 7/418 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD---WIINEVKASGLRGRGGAGF 60
           D+  +    +G    ++   +    +  V   + +G +   WIIN +KASGLRGRGGAGF
Sbjct: 9   DEAIVLKRRFGQGAANIDKYLELDGYKAVQMAIAQGPEMPTWIINVMKASGLRGRGGAGF 68

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSF+PKV S++P Y++VN DESEPGTCKD  I   +PH +IEG +IA  AIG+  
Sbjct: 69  PTGLKWSFVPKV-SEKPKYVLVNGDESEPGTCKDHVIFLEDPHAVIEGTMIAGLAIGSKL 127

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+RGE+    + ++ AV E YA G LG N    G D DII   GAGAY  GEE+AL+
Sbjct: 128 GFIYLRGEYRYLLKIVEKAVAEAYAKGFLGKNIFGSGIDFDIITQTGAGAYEVGEESALM 187

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G PR+KPPFPA VGLYG PT +NN E+IA  P IL  G   Y+  G E N GT
Sbjct: 188 ESLEGKRGVPRIKPPFPAVVGLYGGPTVINNAETIASAPHILLMGGEAYAKLGSERNGGT 247

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +LF ISGHV  P   E  M     + I +  G    G   L AV+PGGSS P L A ++ 
Sbjct: 248 RLFGISGHVERPGVYELPMGYNLKKAIYEVAG-GVKGGKKLKAVVPGGSSCPVLTADEL- 305

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+D + + G+ LG+  ++V+D +  I++   R+  FY+HESCG C PCREGT W+ 
Sbjct: 306 DVGLDFDQMGKAGTMLGSGGIVVLDETVSIVEFALRVISFYQHESCGWCIPCREGTDWIK 365

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + + R+  G   K+++D +  +++N+ GRT C LGDAAA P  G +K FR   E+ ID
Sbjct: 366 KTLARVYAGGGSKKDVDNVQYLAENMMGRTFCPLGDAAAMPTLGFVKKFRKEFEDYID 423


>gi|163760124|ref|ZP_02167207.1| putative nad-dependent formate dehydrogenase beta subunit protein
           [Hoeflea phototrophica DFL-43]
 gi|162282523|gb|EDQ32811.1| putative nad-dependent formate dehydrogenase beta subunit protein
           [Hoeflea phototrophica DFL-43]
          Length = 518

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 147/414 (35%), Positives = 217/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+     G+    SL D  ++G    +   +    + I+ +V  SGLRGRGGAG
Sbjct: 98  FLKRQTRLTFARCGITDPLSLEDYRAQGGLAGLTNAVAMPPEAIVAQVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +       Y+V NADE + GT  DR IM  +P  +IEG VIA  A GA 
Sbjct: 158 FPTGIKWKTVLEAD-GAQKYIVCNADEGDSGTFADRMIMEGDPFVVIEGMVIAGIATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+R E+      +  AV+    + +LG S     +  D+ +  GAGAY+CGEETAL
Sbjct: 217 KGYVYLRSEYPHAINVMNRAVEIARENNILGTSVLGSPHGFDMEIRVGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG++G  R KPP PA+ G  G PT VNNV S+A VP I+ +GA +Y  FG   +RG
Sbjct: 277 LESLEGRRGVVRAKPPLPAHKGFLGRPTVVNNVISLASVPIIMDKGADFYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E +  +T  ELI+   GG   G   + AV  GG      P   +
Sbjct: 337 TIPVQIAGNVKHGGLFEAAFGMTLGELIDDIGGGTATGRP-VKAVQVGGPLGAYFPRE-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAFEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + V++ +  GI   +++ L+ ++   ++  ++CALG    +P+     +F    
Sbjct: 455 VEVIDNIRDGIEPDKQVALMSDLCNTMKFGSLCALGGFTPYPVMSAFTHFPDDF 508


>gi|269977611|ref|ZP_06184578.1| NADH-quinone oxidoreductase subunit f [Mobiluncus mulieris 28-1]
 gi|306817873|ref|ZP_07451612.1| NADH-quinone oxidoreductase subunit F [Mobiluncus mulieris ATCC
           35239]
 gi|307701356|ref|ZP_07638377.1| NADH-quinone oxidoreductase subunit 1 [Mobiluncus mulieris
           FB024-16]
 gi|269934214|gb|EEZ90781.1| NADH-quinone oxidoreductase subunit f [Mobiluncus mulieris 28-1]
 gi|304649352|gb|EFM46638.1| NADH-quinone oxidoreductase subunit F [Mobiluncus mulieris ATCC
           35239]
 gi|307613517|gb|EFN92765.1| NADH-quinone oxidoreductase subunit 1 [Mobiluncus mulieris
           FB024-16]
          Length = 481

 Score =  432 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 188/408 (46%), Positives = 252/408 (61%), Gaps = 12/408 (2%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I ++++G++   +L    +RG +  ++K        ++N VK SGLRGRGGAGF TG+KW
Sbjct: 19  ILSDMWGVERSWTLDAYRARGGYQGLEKANSMEPADVLNAVKNSGLRGRGGAGFPTGLKW 78

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YLVVNADESEPGTCKD   +   PH L+EG  I S AI    AFIY+R
Sbjct: 79  SFLPPDDGG-PRYLVVNADESEPGTCKDIPHLMANPHVLLEGMAICSRAIRCEHAFIYLR 137

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE  +    L AA+ E  A+G+LG        + I  H GAGAYICGEETALL+SLEG++
Sbjct: 138 GEVAQVYRRLLAAIREATAAGVLG-------GLKITAHAGAGAYICGEETALLDSLEGRR 190

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GL+  PT +NNVE+I+ V  I +   +WY+  G E ++G  +FSISG
Sbjct: 191 GHPRLKPPFPAAQGLFARPTVINNVETISQVAGIFKYSDNWYTSMGTEKSKGHGIFSISG 250

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV +P   E    IT  +L+  +CGGIR G + L     GGSS P     ++    + Y+
Sbjct: 251 HVKHPGQFEAPFGITMRQLL-GYCGGIRAGHE-LKFWAVGGSSAPIFTPAEL-DVPLTYE 307

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS L T A+ V D +T +++ I R   FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 308 EVVTAGSMLATRAIQVFDETTSVVRVITRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            G  Q+ +I+ L  ++  I GR  CALGDAA  P++  I +FR   E+
Sbjct: 368 AGQGQEGDIEKLLSITSEIGGRCFCALGDAAVTPVKSGIAHFREEFEQ 415


>gi|294506289|ref|YP_003570347.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Salinibacter ruber M8]
 gi|294342617|emb|CBH23395.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Salinibacter ruber M8]
          Length = 453

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 178/398 (44%), Positives = 257/398 (64%), Gaps = 7/398 (1%)

Query: 23  SMSRGHWDNVDKILEKG---RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
               G +D + ++LE        + +EVKASGL GRGGAGF TG+KW+FMP+   +RP +
Sbjct: 34  YEEHGGYDRLRRVLEDDAFEPSDVTDEVKASGLTGRGGAGFPTGIKWTFMPE-PDERPRF 92

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           + VNADESEPGT KDR +M + PH ++EG ++A +A+    A++Y+RGE+      L+  
Sbjct: 93  IGVNADESEPGTFKDRQVMEYNPHLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQ 152

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           ++  Y +G +G N     + +DI++H GAGAYICGEET+L+ESLEGK+G PR KPPFPA 
Sbjct: 153 LENAYEAGYVGENIMGSDFTMDIVLHKGAGAYICGEETSLMESLEGKRGYPRYKPPFPAQ 212

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            G++G PTT+NN E++A VP I+ +G   YS  G  +  G  L+ +SGHV  P   E   
Sbjct: 213 SGIFGSPTTINNAETLAHVPLIVEQGGEAYSNIGAGDMPGPALYGMSGHVKNPGVYEFPT 272

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +   ++I   CGG+    D L AV+PGGSSVP +PA Q+ G  M+ + L E+GS  GT 
Sbjct: 273 GMLLTDMIYDVCGGMARDKD-LKAVVPGGSSVPPVPADQIDGISMNDESLGEVGSRTGTF 331

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
             +V+D  TD++  + R++ FY+ E+CGQCTPCREGT W+ +++ R+ +G  + R+IDLL
Sbjct: 332 CPLVLDEETDMVSFLRRVAHFYQDETCGQCTPCREGTSWLEKILARIDEGEGRMRDIDLL 391

Query: 379 YEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            E+  N+  GRTICA  D A  P++  +K FR     +
Sbjct: 392 LELCDNMDGGRTICAFADGAVGPVRATVKRFREEFVAK 429


>gi|297156135|gb|ADI05847.1| putative respiratory chain oxidoreductase [Streptomyces
           bingchenggensis BCW-1]
          Length = 626

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 160/404 (39%), Positives = 226/404 (55%), Gaps = 10/404 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           R+   +  +   SL D  + G +  + +    G   +I EV  +GL GRGGA F TG KW
Sbjct: 213 RLLRRVGVVDPASLDDYRAHGGYAALRRAFALGPAGVIREVGDAGLVGRGGAAFPTGRKW 272

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               +   D PHYLV NADESEPGT KDR +M  +P+ LIE   IA + IGAH  ++Y+R
Sbjct: 273 DATARQP-DHPHYLVCNADESEPGTFKDRVLMEGDPYALIEAMTIAGYTIGAHHGYLYLR 331

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+ R    L+ A+ +  A GLLG +    G   DI +  GAGAYICGEETA+  S+EG+
Sbjct: 332 GEYPRALARLEHAIGQARARGLLGPDVLGQGIAFDIEIRRGAGAYICGEETAIFNSIEGR 391

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G+PR KPPFP   GL+G PT VNNVE++  V  IL  GA  YS  G E + GTKLF +S
Sbjct: 392 RGEPRSKPPFPVEQGLFGKPTAVNNVETLVNVLPILTEGAEAYSSVGTETSTGTKLFCVS 451

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V+ P   E     T  EL++            L AV+ GG++   +   ++    + +
Sbjct: 452 GAVDRPGVYELPFGATLRELLDLAG-----PPPALRAVLLGGAAGGFVRPDEL-DVPLTF 505

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G +  G+ LG+  V+V+D S ++ + + R++ F++ ESCGQC PCR GT      + R+
Sbjct: 506 EGTRAAGTTLGSGVVLVLDESVELPRVLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRI 565

Query: 366 --VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
               G A   +I LL EV + +   +IC LG  A   ++  I  
Sbjct: 566 KDRTGAAAAGDIALLREVGQAMRDASICGLGQTAWNAVESAIDR 609


>gi|227874589|ref|ZP_03992752.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
 gi|227844798|gb|EEJ54944.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
          Length = 481

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 188/408 (46%), Positives = 252/408 (61%), Gaps = 12/408 (2%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I ++++G++   +L    +RG +  ++K        ++N VK SGLRGRGGAGF TG+KW
Sbjct: 19  ILSDMWGVERSWTLDAYRARGGYQGLEKANSMEPADVLNAVKNSGLRGRGGAGFPTGLKW 78

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YLVVNADESEPGTCKD   +   PH L+EG  I S AI    AFIY+R
Sbjct: 79  SFLPPDDGG-PRYLVVNADESEPGTCKDIPHLMANPHVLLEGMAICSRAIRCEHAFIYLR 137

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE  +    L AA+ E  A+G+LG        + I  H GAGAYICGEETALL+SLEG++
Sbjct: 138 GEVAQVYRRLLAAIREATAAGVLG-------GLKITAHAGAGAYICGEETALLDSLEGRR 190

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GL+  PT +NNVE+I+ V  I +   +WY+  G E ++G  +FSISG
Sbjct: 191 GHPRLKPPFPAAQGLFARPTVINNVETISQVAGIFKYSDNWYTSMGTEKSKGHGIFSISG 250

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV +P   E    IT  +L+  +CGGIR G + L     GGSS P     ++    + Y+
Sbjct: 251 HVKHPGQFEAPFGITMRQLL-GYCGGIRAGHE-LKFWAVGGSSAPIFTPAEL-DVPLTYE 307

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS L T A+ V D +T +++ I R   FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 308 EVVTAGSMLATRAIQVFDETTSVVRVITRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            G  Q+ +I+ L  ++  I GR  CALGDAA  P++  I +FR   E+
Sbjct: 368 AGQGQEGDIEKLLSITSEIGGRCFCALGDAAVTPVKSGIAHFREEFEQ 415


>gi|118594391|ref|ZP_01551738.1| formate dehydrogenase, beta subunit [Methylophilales bacterium
           HTCC2181]
 gi|118440169|gb|EAV46796.1| formate dehydrogenase, beta subunit [Methylophilales bacterium
           HTCC2181]
          Length = 515

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 156/413 (37%), Positives = 232/413 (56%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q+R+     G+     ++D      ++ + K +E     I+NEV  SGLRGRGGA F
Sbjct: 99  LKNQERLTFARVGITDPLDINDYEKHAGFNGLRKAIELEPQLIVNEVTDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S +  Y+V NADE + GT  DR IM ++P  LIEG +IA  A+GA  
Sbjct: 159 PTGIKWQTVLNTPS-KTKYIVCNADEGDSGTFSDRMIMENDPFVLIEGMIIAGMAVGAEY 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+   +E L  A++     G LG+N    GY+ D+ V   AGAYICGEET+LL
Sbjct: 218 GYIYLRSEYPDAQEVLNKAINIAKEKGFLGNNILSSGYNFDLEVTRAAGAYICGEETSLL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GLYG PT VNNV ++A VP I+ +GAS+Y+ FG   ++GT
Sbjct: 278 ESLEGKRGMVRYKPPLPAIEGLYGKPTAVNNVITLATVPIIMDKGASFYADFGMGRSKGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++     +E++  I+  EL+    GG     + + AV  GG     LP GQ  
Sbjct: 338 LPIQLAGNLKQTGLIEKAFGISLRELLYDFGGG-SFTGNPIKAVQVGGPLGAFLPEGQ-F 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   E+ + +G   ++  D +TD+ K       F   ESCG+CTPCR G+   M
Sbjct: 396 DTPLDYEKFSEINAVVGHGGIVAFDDTTDMAKMARYSFEFCAIESCGKCTPCRIGSTRGM 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++++  GI Q +   LL ++ + +   ++CA+G    +P+   +  F    
Sbjct: 456 EVIDKIKGGIDQDKNEKLLRDLGETMVNGSLCAMGGMTPFPVISALNFFPKDF 508


>gi|86747851|ref|YP_484347.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
 gi|86570879|gb|ABD05436.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
          Length = 518

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 147/413 (35%), Positives = 217/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +  +S+ D  + G +  +++ L+   D II+++  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFVRCGIIDPRSIDDYRAHGGYKGLERALKMSSDAIIDDIVKSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG KW  + +       Y+  NADE + GT  DR +M  +P  +IEG  IA  A+GA  
Sbjct: 158 PTGTKWRTVAQAGRG-QKYICCNADEGDSGTFADRMLMEGDPFMVIEGMTIAGIAVGATR 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E++ AA++    +G LG +     D  DI V  GAGAYICGEET++L
Sbjct: 217 GYIYIRSEYPHAVEAMNAAIEAARRTGYLGDHICHSTDSFDIEVRVGAGAYICGEETSML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+ GL+G PT +NNV + + VP IL  GA  Y+  G   +RGT
Sbjct: 277 ESLEGKRGTVRAKPPLPAHKGLFGRPTVINNVLTFSAVPYILDGGAQAYADCGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K   + G++ +    E +  IT  ELI+   GG       + AV  GG      P   + 
Sbjct: 337 KPIQLGGNIRHGGLFEVAFGITLGELIDDIGGGT-LSGRPVRAVQVGGPLGAYFPRA-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   V+V D + D+ K       F   ESCG+CTPCR G+    
Sbjct: 395 DTPFDYEAFAARSGMVGHGGVVVFDDTVDMAKQARFAMEFCAIESCGKCTPCRIGSTRGA 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +++++ G      I +L ++   ++  ++CALG  A  P+   + +F    
Sbjct: 455 ETVDKIIAGDRPAANIAVLEDLCNTMKFGSLCALGGLAPIPVLSALAHFPEDF 507


>gi|327188943|gb|EGE56135.1| formate dehydrogenase protein, beta subunit [Rhizobium etli
           CNPAF512]
          Length = 553

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 149/414 (35%), Positives = 219/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   SLSD  + G    + + +      I+ EV  SGLRGRGGAG
Sbjct: 133 FLKQQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAG 192

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     +   Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA 
Sbjct: 193 FPTGIKWKTVLDAPGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 251

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             FIY R E+     ++  AV     +G+LG +        DI V  GAGAY+CGEETAL
Sbjct: 252 KGFIYTRSEYPHAIAAMSEAVGIARQAGILGPSVLGSARAFDIEVRTGAGAYVCGEETAL 311

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RG
Sbjct: 312 LNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRG 371

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V Y    E +  ++  +++++  GG   G   + AV  GG      P   +
Sbjct: 372 TIPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 429

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 430 FDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 489

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +   +++ +GI  ++  +LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 490 VETADKIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 543


>gi|349637|gb|AAA16062.1| NADH dehydrogenase subunit [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 431

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 159/381 (41%), Positives = 226/381 (59%), Gaps = 5/381 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+++VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA  G++G PT VNNVE++  VP IL  G  WY    +  + GTKL   SG V  P  
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGL 261

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E++E + GG+R G     A  PGG+    L    +    M+++ + + GS
Sbjct: 262 WELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGS 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q  
Sbjct: 320 RLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPG 379

Query: 374 EIDLLYEVSKNI-EGRTICAL 393
           +I+ L ++ + +  G+T CA 
Sbjct: 380 DIETLEQLCRFLGPGKTFCAH 400


>gi|15966763|ref|NP_387116.1| putative NAD-dependent formate dehydrogenase beta subunit protein
           [Sinorhizobium meliloti 1021]
 gi|307301591|ref|ZP_07581350.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti BL225C]
 gi|15076035|emb|CAC47589.1| Putative NAD-dependent formate dehydrogenase beta subunit
           [Sinorhizobium meliloti 1021]
 gi|306903289|gb|EFN33878.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti BL225C]
          Length = 518

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 148/414 (35%), Positives = 219/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   SL D  +      +++ +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKRQTRLTFARCGVIDPLSLEDYRAHRGLLGLERAIAMQPAAIVAEVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +       Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVLEA-RGPRKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      + AA++   A+G+LG++     +  D+ V  GAGAY+CGEET+L
Sbjct: 217 KGYIYTRSEYPHAIAVMSAAIEIARAAGVLGASVLGSAHAFDMEVRTGAGAYVCGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+  PT +NNV S+A VP IL +GA +Y  FG   +RG
Sbjct: 277 LNSLEGKRGLVRAKPPLPAHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E +  +T  E++++  GG       + AV  GG      P   +
Sbjct: 337 TIPLQIAGNVKHGGLFETAFGLTLGEIVDEIGGGTASARP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + V +R+  GI  ++  +LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VEVADRIAAGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508


>gi|241206610|ref|YP_002977706.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860500|gb|ACS58167.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 518

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 147/414 (35%), Positives = 218/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+ F         SL D  + G    + + +      I+ E+  SGLRGRGGAG
Sbjct: 98  FLKEQTRLTFARCGVTDPLSLGDYEAHGGLAGLRRAVSMTPVDIVKEITDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +   +   Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA 
Sbjct: 158 FPTGIKWKTVLEAAGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y R E+      +  AV     +G+LG +    G+  DI V  GAGAY+CGEETAL
Sbjct: 217 KGFVYTRSEYPHAIAVMTEAVGIAREAGILGPSVLGSGHTFDIEVRAGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RG
Sbjct: 277 LNSLEGKRGIVRAKPPLPAHKGLFNCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V Y    E +  ++  +++++  GG   G   + AV  GG      P   +
Sbjct: 337 TIPLQIAGNVRYGGLFETAFGLSLGDIVDRIGGGTVTGRP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +   +++  GI  ++   LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VETADKIAHGIEPEKNRALLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508


>gi|71065155|ref|YP_263882.1| NADH dehydrogenase I, F subunit [Psychrobacter arcticus 273-4]
 gi|71038140|gb|AAZ18448.1| NADH dehydrogenase I, F subunit [Psychrobacter arcticus 273-4]
          Length = 474

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 161/406 (39%), Positives = 235/406 (57%), Gaps = 9/406 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            L+   S   ++ +   L +  D  +  +K + ++GRGGAGF  G+KWS M       P 
Sbjct: 54  DLATYESLRGFEALKIALNQSPDDTLKTIKEAVVKGRGGAGFPAGIKWSLMA-PPDGGPR 112

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV NADE EPGT KDR +M   P  LIEG +I+++AIGA   +I++RGE+I   E L A
Sbjct: 113 YLVCNADEMEPGTFKDRLLMERLPLQLIEGMLISAYAIGATAGYIFIRGEYILAAERLTA 172

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  A+ L+G N     +  D+ VH GAG YICGEETAL+ SLEG++  PR KPPFP 
Sbjct: 173 AIEELRANNLIGDNILGSDFSFDLHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQ 232

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCT 253
             G +G PT VNNVE++  V  I+  G+ WY       G     GTKLF  SG VN P  
Sbjct: 233 VAGAWGRPTVVNNVETLHNVSAIILHGSKWYQDLPKAKGVVETPGTKLFGCSGLVNDPGL 292

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E+IE   GG+      L A +PGG+S   L A  +   ++D+D +++ GS
Sbjct: 293 WELPFGYTAREIIEDFAGGM-QEGRTLKAWLPGGASTDFLTAEHL-DTVVDFDTIQKAGS 350

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +GT  ++V+D   D++  +  L +F++ ESCG CTPCR+G  W ++++  +  G  Q  
Sbjct: 351 RMGTGLLMVVDEEQDMVPLVRNLEIFFQRESCGWCTPCRDGLPWGVKILTAINDGEGQMG 410

Query: 374 EIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +++ L  +++++  G+T CA    A  P+   IK FRP  +++I Q
Sbjct: 411 DVEKLEGLTRDLWIGKTFCAHAPGAMEPLMSAIKYFRPEFDQKITQ 456


>gi|83814696|ref|YP_444543.1| respiratory-chain NADH dehydrogenase 51 Kd subunit family protein
           [Salinibacter ruber DSM 13855]
 gi|83756090|gb|ABC44203.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Salinibacter ruber DSM 13855]
          Length = 464

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 178/398 (44%), Positives = 257/398 (64%), Gaps = 7/398 (1%)

Query: 23  SMSRGHWDNVDKILEKG---RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
               G +D + ++LE        + +EVKASGL GRGGAGF TG+KW+FMP+   +RP +
Sbjct: 45  YEEHGGYDRLRRVLEDDAFEPSDVTDEVKASGLTGRGGAGFPTGIKWTFMPE-PDERPRF 103

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           + VNADESEPGT KDR +M + PH ++EG ++A +A+    A++Y+RGE+      L+  
Sbjct: 104 IGVNADESEPGTFKDRQVMEYNPHLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQ 163

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           ++  Y +G +G N     + +DI++H GAGAYICGEET+L+ESLEGK+G PR KPPFPA 
Sbjct: 164 LENAYEAGYVGENIMGSDFTMDIVLHKGAGAYICGEETSLMESLEGKRGYPRYKPPFPAQ 223

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            G++G PTT+NN E++A VP I+ +G   YS  G  +  G  L+ +SGHV  P   E   
Sbjct: 224 SGIFGSPTTINNAETLAHVPLIVEQGGEAYSNIGAGDMPGPALYGMSGHVKNPGVYEFPT 283

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +   ++I   CGG+    D L AV+PGGSSVP +PA Q+ G  M+ + L E+GS  GT 
Sbjct: 284 GMLLTDMIYDVCGGMARDKD-LKAVVPGGSSVPPVPADQIDGISMNDESLGEVGSRTGTF 342

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
             +V+D  TD++  + R++ FY+ E+CGQCTPCREGT W+ +++ R+ +G  + R+IDLL
Sbjct: 343 CPLVLDEETDMVSFLRRVAHFYQDETCGQCTPCREGTSWLEKILARIDEGEGRMRDIDLL 402

Query: 379 YEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            E+  N+  GRTICA  D A  P++  +K FR     +
Sbjct: 403 LELCDNMDGGRTICAFADGAVGPVRATVKRFREEFAAK 440


>gi|237809384|ref|YP_002893824.1| NADH-quinone oxidoreductase, F subunit [Tolumonas auensis DSM 9187]
 gi|237501645|gb|ACQ94238.1| NADH-quinone oxidoreductase, F subunit [Tolumonas auensis DSM 9187]
          Length = 444

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 167/407 (41%), Positives = 240/407 (58%), Gaps = 6/407 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            Q     +  ++  +   +K L      + + VKA+GLRGRGGAGF TG+KWS +P    
Sbjct: 18  HQPVWFEEYRAKQGYVGAEKALAIAPTAVTDLVKAAGLRGRGGAGFPTGVKWSLVPMDPK 77

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               Y++ NADE EPGT KDR +M   PH LIEG +I ++A+ A+  +I++RGE+I   +
Sbjct: 78  FDKKYILCNADEMEPGTYKDRLLMEQLPHQLIEGMLIGAYALQAYRGYIFLRGEYIEAAQ 137

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E   +G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 138 RLRQAIEEATKAGFLGKNILGTGFNFELFVHTGAGRYICGEETALINSLEGRRANPRAKP 197

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA  G +G PT VNNVE++  +P+I++ G  WY G   G+ N+ GTKL   SG VN P
Sbjct: 198 PFPALAGAWGKPTCVNNVETLNNIPSIMQNGVDWYKGISAGKSNDTGTKLMGFSGRVNNP 257

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L   Q     MD+D + + 
Sbjct: 258 GVWELPFGTTAREILEDYAGGMRDGL-TLKAWQPGGAGTDFLT-EQHLDLPMDFDSIGKA 315

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D   +++     L  F+  ESCG CTPCREG  W +++++ L KG  Q
Sbjct: 316 GSRLGTALAMAVDNEINMVSLTLNLEKFFSRESCGWCTPCREGLPWSVKILQALEKGEGQ 375

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           + +I+ L ++ +++  G+T CA    A  P+Q  IK FR   E  I+
Sbjct: 376 RGDIETLEKLCRDLGPGKTFCAHAPGAVEPLQSAIKYFRAEFEAGIN 422


>gi|71280105|ref|YP_268785.1| formate dehydrogenase subunit beta [Colwellia psychrerythraea 34H]
 gi|71145845|gb|AAZ26318.1| formate dehydrogenase, beta subunit [Colwellia psychrerythraea 34H]
          Length = 534

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 150/420 (35%), Positives = 226/420 (53%), Gaps = 11/420 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +   S+ D +    +  +   L+     I++E+K SGLRGRGGA F
Sbjct: 100 LAKQQRLTFQRAGIIDPLSIEDYIKHQGFIGLSNALKLSAQGIVDEMKISGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
            TG+KW  +       SD+  Y+V NADE + GT  DR IM  +P +LIEG +IA  A+G
Sbjct: 160 PTGIKWQTVLDAKVTSSDQKKYIVCNADEGDSGTYSDRLIMEADPFSLIEGMIIAGIAVG 219

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IY+R E+ + ++ L+ A+   Y    LG       +  D+ V  GAGAYICGEET
Sbjct: 220 ATQGYIYLRSEYPQAQKILEQAIANAYQDNYLGDAIQGTQHQFDLEVRIGAGAYICGEET 279

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           +LLESLEGK+G  R KPP PA  GL+G PTTVNNV S+A VPTIL +GA +Y  +G   +
Sbjct: 280 SLLESLEGKRGLVRAKPPLPAITGLFGQPTTVNNVISLATVPTILAKGAQYYQDYGVGRS 339

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           RGT  F ++G++     VE +   T  +L+     G     + + A+  GG     LP  
Sbjct: 340 RGTLPFQLAGNIKQGGLVELAFGTTLADLVNDFGAGT-YTGETMKAIQVGGPLGAYLPKY 398

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           Q     +DY+    +G+ LG   ++V D S  + +       F   ESCG+CTPCR G+ 
Sbjct: 399 Q-WQTPLDYEAFSSIGAVLGHGGIVVFDDSVSMTEQARFAMEFCGVESCGKCTPCRIGST 457

Query: 357 WMMRVMERLVKGIAQKREI----DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + V+++++        I    +LL ++   +   ++CA+G     P++ ++++F    
Sbjct: 458 RGVEVIDKMITAHEHDEPIEALNELLVDLCDTMVDGSLCAMGGMTPIPVRSVMQHFSDDF 517


>gi|13474499|ref|NP_106068.1| NAD-dependent formate dehydrogenase beta subunit [Mesorhizobium
           loti MAFF303099]
 gi|14025253|dbj|BAB51854.1| NAD-dependent formate dehydrogenase beta subunit [Mesorhizobium
           loti MAFF303099]
          Length = 518

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/414 (35%), Positives = 215/414 (51%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+     G+    SL    S G    +   +      I+ +V  SGLRGRGGAG
Sbjct: 98  FLAKQTRLTFARCGINDPLSLDAYKSLGGLKGLQNAVAMAPADIVKQVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    S+   Y+V NADE +  T  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVLDTTSE-RKYIVCNADEGDSATFADRMIMEGDPFVLIEGMAIAGIATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y+R E+     ++  AV+    +G+LG N        D+ +  GAGAY+CGEET+L
Sbjct: 217 KGFVYIRSEYPHAVATMNKAVEIARKAGVLGVNVLGSPNAFDMEIRVGAGAYVCGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA  GL+G PT +NNV S+A VP I+ +GA++Y  FG   +RG
Sbjct: 277 LNSLEGKRGVVRAKPPLPAIQGLFGKPTVINNVISLASVPIIMDKGAAFYKDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V      E +  +T  E+++   GG   G   + AV  GG      P   +
Sbjct: 337 TIPIQIAGNVRNGGLFETAFGLTLGEIVDDIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+   +    +G A + V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEEFAKRDGLIGHAGITVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  ++RL  GI  ++ + L+ ++   ++  ++CALG    +P+   I +F    
Sbjct: 455 IETIDRLAAGIEPEKNLALVTDLCNTMKFGSLCALGGFTPYPVMSSITHFPEDF 508


>gi|219851497|ref|YP_002465929.1| NADH dehydrogenase (quinone) [Methanosphaerula palustris E1-9c]
 gi|219545756|gb|ACL16206.1| NADH dehydrogenase (quinone) [Methanosphaerula palustris E1-9c]
          Length = 562

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 142/418 (33%), Positives = 227/418 (54%), Gaps = 6/418 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHW-DNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            Q  I      +    + + ++ G +   +  +     + +I+ V+ SGLRGRGGAGF  
Sbjct: 148 QQKVILRAAGLIDPGDIEEYIAVGGYSAALSALTTMEPEAVIDVVEKSGLRGRGGAGFPA 207

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCA 121
           G+KW    K  +    Y++ NADE +PG   +R+ M  +PH LIEG ++ ++AIG     
Sbjct: 208 GLKWRITRKETA-TEKYIICNADEGDPGAYMNRNEMESDPHMLIEGMILGAYAIGGVKTG 266

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IY+R E+    E L  A+++    GLLG +    G+  D+ +  GAGA++CGE TAL+ 
Sbjct: 267 VIYIRAEYPLAIERLTKAIEQAREYGLLGDDILGTGFSFDLHLAIGAGAFVCGESTALVA 326

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG+ G+P  +PP   + GL+G PT +NNVE+   VP I+ RGA WY+  G   N GTK
Sbjct: 327 SIEGRTGRPHPRPPRLTDKGLWGKPTDLNNVETWCNVPVIVSRGAGWYAAIGAPGNTGTK 386

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+ G V+    VE  +  T + ++     G  GG   + AV  GG S  C+P  ++  
Sbjct: 387 VFSLVGKVDRVGLVEVPLGTTLERIVIDIGNGGAGG-KAVKAVQTGGPSGGCIPV-RLFD 444

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDY+ L  +GS +G+  ++VMD  T ++        F   ESCG+C PCREG    + 
Sbjct: 445 TPMDYESLNRVGSIMGSGGIVVMDEDTGMVDIARYFINFAIGESCGKCVPCREGLKHTLL 504

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++ RL+ G    ++++ L  ++  +   ++C LG +A  P+   ++ FR   E  I++
Sbjct: 505 LLNRLLAGKGTGQDLETLALLADTVAKTSLCGLGQSAPNPVLTTLEYFRDEYEGLIER 562


>gi|15606024|ref|NP_213401.1| NADH dehydrogenase I chain F [Aquifex aeolicus VF5]
 gi|7387960|sp|O66841|NUOF_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|2983201|gb|AAC06800.1| NADH dehydrogenase I chain F [Aquifex aeolicus VF5]
          Length = 426

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/399 (42%), Positives = 234/399 (58%), Gaps = 11/399 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
            S+ + +  G +  ++K L    + II+ V  S LRGRGGAGF TG KW F  +     P
Sbjct: 29  HSIDEYLKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFAVQNPG--P 86

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y + NADESEPGT KDR I+  +PH LIEG +I+S+AIGA+ A+IY+RGE+      L+
Sbjct: 87  RYFICNADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILR 146

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E    G LG N    G+D++I V  GAGAYICGEETAL+ESLEGK+G PRLKPP+P
Sbjct: 147 DAIEEAKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYP 206

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT VNNVE+IA VP I+  G   Y   G  +  G KLF +SG V  P   E 
Sbjct: 207 VQKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYEL 266

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M+ T  E+I K+ GG  G             ++ C  + ++    MDY  L       G
Sbjct: 267 PMNTTLREVIFKYAGGTLGNKKVKAVFS---GALDCFSSEEL-DIPMDYSPL----GFGG 318

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T  VIV+    DI++A  +++ FY+HE+CGQCTPCR G      ++E++ KG A +++ +
Sbjct: 319 TGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWE 378

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
               V++NI+  +IC LG  A   I+  ++ F    E+ 
Sbjct: 379 GFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEKY 417


>gi|121609341|ref|YP_997148.1| NADH dehydrogenase (quinone) [Verminephrobacter eiseniae EF01-2]
 gi|121553981|gb|ABM58130.1| NADH dehydrogenase (quinone) [Verminephrobacter eiseniae EF01-2]
          Length = 518

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/413 (34%), Positives = 222/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      SL+D  +   +  + + L      I+ +V  SGLRGRGGA F
Sbjct: 99  LRQQERLTFARMGVTDPLSLADYQAHEGFAGLRRALALSPSEIVQQVLDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    S    Y+V NADE + GT  DR  M  +P  LIEG  IA+ A GA  
Sbjct: 159 PAGIKWKTVAAASS-AQKYIVCNADEGDSGTYSDRMAMEGDPFMLIEGMTIAAVATGATQ 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+     +++ A+ +  A+G  GSN  K G    + V   AGAY+CGEETA+L
Sbjct: 218 GYIYIRSEYPHAIATMREAIAKASAAGFSGSNILKSGKTFHLEVRKAAGAYVCGEETAML 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G P+ +NNV + A VP IL RGA++Y+ +G   + GT
Sbjct: 278 ESIEGKRGVVRAKPPIPALKGLFGQPSVINNVITFASVPIILARGAAYYTDYGVGRSSGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   +E++  IT  +L+    GG   G   + AV  GG     +P  +  
Sbjct: 338 LPFQLTGNIKHGGLIEKAFGITLRQLLFDFGGGSASGRP-IKAVQVGGPLGAYVP-ERYW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+    +G  +G   ++V D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPMDYEAYAAVGVTVGHGGIVVHDDTADLSRLARYAMEFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+  G    ++++LL ++   +   ++CALG     P+   + ++    
Sbjct: 456 EVLDRIAAGNNNAKQVELLRDLCDTMLHGSLCALGSMTPNPVLSALNHYPQDF 508


>gi|116254125|ref|YP_769963.1| NAD-dependent formate dehydrogenase beta subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258773|emb|CAK09879.1| putative NAD-dependent formate dehydrogenase beta subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 518

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 147/414 (35%), Positives = 216/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+ F         SL D  + G    + + +      I+ E+  SGLRGRGGAG
Sbjct: 98  FLKEQTRLTFARCGVTDPLSLGDYEAHGGLAGLRRAVSMTPVDIVKEITDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     +   Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA 
Sbjct: 158 FPTGIKWKTVLDAAGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y R E+      +  AV     +G+LG +    G   DI V  GAGAY+CGEETAL
Sbjct: 217 KGFVYTRSEYPHAIAVMTEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RG
Sbjct: 277 LNSLEGKRGIVRAKPPLPAHKGLFNCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V Y    E +  ++  +++++  GG   G   + AV  GG      P   +
Sbjct: 337 TIPLQIAGNVRYGGLFETAFGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +   +++  GI  ++   LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VETADKIAHGIEPEKNRALLADLCNTMKFGSLCALGGFTPYPVMSAMNHFPEDF 508


>gi|254468969|ref|ZP_05082375.1| NADP-reducing hydrogenase, subunit c [beta proteobacterium KB13]
 gi|207087779|gb|EDZ65062.1| NADP-reducing hydrogenase, subunit c [beta proteobacterium KB13]
          Length = 517

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q+R+     G+    SL D +    +  + K +      I+NEVK SGLRGRGGA F
Sbjct: 99  LKNQERLTFARVGITDPLSLKDYIDHEGFVGLKKAINMEAQQIVNEVKDSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S    Y+V NADE + GT  DR  M ++P  LIEG +IA  A+ A  
Sbjct: 159 PTGIKWQTVLDTES-TQKYIVCNADEGDSGTYSDRMTMENDPFMLIEGMIIAGLAVNADH 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+   ++ L  A+     +  LG N      +  + V   AGAYICGEET+LL
Sbjct: 218 GYIYLRSEYPHAQDVLNKAIKIATENNYLGQNILNSNKNFTLEVTRAAGAYICGEETSLL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+A +P I+ +GA +Y+ FG   ++GT
Sbjct: 278 ESLEGKRGLVRYKPPLPAIEGLFGKPTVVNNVVSLATIPIIMSKGAKYYADFGVGRSKGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++     +E++  IT  EL+    GG   G   + AV  GG     +      
Sbjct: 338 LPIQLAGNLKQTGLIEKAFGITLRELLYDFGGGSATG-KKIKAVQVGGPLGAFIAEEN-F 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++ + +G   ++  D   ++ +       F   ESCG+CTPCR G+   M
Sbjct: 396 DIELDYEAYSKLNAVVGHGGIVAFDEDVNMAEMARYSFEFCAIESCGKCTPCRIGSTRGM 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++++V    Q + + LL  +   +   ++CA+G    +P+   +K F    
Sbjct: 456 EVIDKIVARDEQPKNVALLENLCDTMVNGSLCAMGGMTPFPVMSALKYFPNDF 508


>gi|124514972|gb|EAY56483.1| NADH dehydrogenase (Quinone) subunit F [Leptospirillum rubarum]
          Length = 627

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/424 (37%), Positives = 237/424 (55%), Gaps = 7/424 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGF 60
           L ++  +FT L   + + L        +  ++ +L+ G  +    +++ SG+ GRGG  F
Sbjct: 175 LANEPVVFTGLRSGETRYLERYREDHGYRALEGLLKTGDAEAAFEQIRLSGVAGRGGGAF 234

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               K   + K     P YLV NADE EPGT KDR IM  +PH+LIEG  IA+  IGA  
Sbjct: 235 PMYRKLDAVRKNPP--PRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGAEE 292

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+R E+      L+ A+ E  ++GLLG       +   + ++ GAGAYICGEET+L+
Sbjct: 293 GFIYLRSEYPHSFHILEKAIAEARSAGLLGPRILGSDFSFRLRLYRGAGAYICGEETSLI 352

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+  PR KPP  + VGL+G PT   NVE++A +P ILR G  WY+  G   + GT
Sbjct: 353 NSLEGKRAYPRNKPPHLSEVGLWGKPTEEQNVETLANLPAILRNGGDWYARLGDTKSPGT 412

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGH+  P   E  + ++   LIE   GGI GG  +L  ++P GS+   L    + 
Sbjct: 413 KLFCLSGHIARPGLYEIPLGMSLRSLIEDLGGGIPGG-RSLKGLLPAGSASKMLLPRHL- 470

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY  + E+G+ LG+A+VIVMD S  ++   + ++ F  HESCGQCTPCR+GT  + 
Sbjct: 471 DLSLDYPSIAEVGAFLGSASVIVMDDSVCMVDLAYWIAAFSHHESCGQCTPCRDGTEDVY 530

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ ++V+G  +   +DLL  +   +   +IC LG +A       ++ F    +  I+  
Sbjct: 531 EILLKIVQGEGKPAYLDLLKSIGTYMREASICGLGQSAPNIPLSSMEYFEDEWKAHIEN- 589

Query: 420 HRCN 423
           H C 
Sbjct: 590 HVCP 593


>gi|7684616|gb|AAF08194.2|AF146339_1 NADH:ubiquinone oxidoreductase 51 kDa subunit [Yarrowia lipolytica]
          Length = 379

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 224/347 (64%), Positives = 279/347 (80%), Gaps = 1/347 (0%)

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           + P YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A  A+IY+RGEF  E  
Sbjct: 1   EGPRYLVVNADEGEPGTCKDREIMRKDPHKLVEGCLLAGRAMNATAAYIYIRGEFYNEAA 60

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            LQ A++E YA+GL+G ++   GYD D+ +H G GAY+CGEET+L+ESLEGK G+PRLKP
Sbjct: 61  VLQTAINEAYAAGLIGKDACGSGYDFDVYIHRGMGAYVCGEETSLIESLEGKAGKPRLKP 120

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFPA VGL+G P+TV NVE++AV PTILRRG  W++ FGRE N GTKLF ISG+VN PCT
Sbjct: 121 PFPAGVGLFGRPSTVTNVETVAVAPTILRRGGDWFASFGRERNSGTKLFCISGNVNEPCT 180

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           VEE MSI   EL+EKHCGGI+GGWDNLL VIPGG SVP LP       +MD+D LK++ S
Sbjct: 181 VEEEMSIPLRELLEKHCGGIKGGWDNLLGVIPGGCSVPILPKNICEDVLMDFDALKDVQS 240

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           GLGTAAVIV+++  D+I+AI R + FYKHESCGQCTPCREGT W+++ M+R   G A++R
Sbjct: 241 GLGTAAVIVINKQQDVIRAIQRFAAFYKHESCGQCTPCREGTTWLLKAMDRFRTGQAKER 300

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           EID+LYE++K+IEG TICALGDAAAWPIQGLI+NFRP +E R+ ++H
Sbjct: 301 EIDMLYELTKDIEGHTICALGDAAAWPIQGLIRNFRPEMETRMKKFH 347


>gi|332715498|ref|YP_004442964.1| NAD-dependent formate dehydrogenase subunit beta [Agrobacterium sp.
           H13-3]
 gi|325062183|gb|ADY65873.1| NAD-dependent formate dehydrogenase beta subunit [Agrobacterium sp.
           H13-3]
          Length = 518

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 222/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+ F         SL D  +      +++ +      I+ +V  SGLRGRGGAG
Sbjct: 98  FLKNQTRLTFARCGVTDPLSLEDYRANKGMKGLERAVALTPAEIVKQVTDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA 
Sbjct: 158 FPTGIKWKTVADATAD-QKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLAVGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+     +++ A+D     G++G++    G   D+ V  GAGAY+CGEET+L
Sbjct: 217 KGYIYTRSEYPHAVRTMEKAIDIALREGVIGASVLGSGRAFDLEVRMGAGAYVCGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA  GL+G PT VNNV S++ +P I+ RGA++Y  FG   + G
Sbjct: 277 LNSLEGKRGTVRAKPPLPALQGLFGKPTVVNNVISLSSIPVIMDRGAAFYRDFGIGRSHG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++ +    E +  +   +L+ +  GG   G   + AV  GG      P   +
Sbjct: 337 TIPIQLAGNIRHGGLYETAFGLPLGQLVNEIGGGTITGRP-VKAVQVGGPLGAYFPVS-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              + DY+     G  +G A ++V D + D+++       F   ESCG+CTPCR G+   
Sbjct: 395 FDTLFDYEAFTTAGGLIGHAGIVVFDDTADMLRQARFALEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  ++++  GI  +R   LL ++ + ++  ++CALG    +P+   +++F    
Sbjct: 455 VETVDKISLGIEAERNTALLEDLCETMKFGSLCALGGFTPYPVMSALRHFPQDF 508


>gi|46446198|ref|YP_007563.1| NADH-ubiquinone oxidoreductase chain F [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399839|emb|CAF23288.1| probable NADH-ubiquinone oxidoreductase chain F [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 432

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 183/418 (43%), Positives = 237/418 (56%), Gaps = 9/418 (2%)

Query: 5   QDRIFTNLYGLQGK--SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFS 61
           + RI T  Y        +      G +  + K +     D +I  VK S LRGRGG GF 
Sbjct: 3   EMRILTA-YMDDPHQCKIETYERNGGYQALKKAISSISSDQLIEMVKQSWLRGRGGGGFQ 61

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+PK C     YLV N DESEPGT KDR I+ ++PH LIEG ++A +AIGA  A
Sbjct: 62  TGLKWSFVPKDCQ-ISKYLVCNCDESEPGTFKDRYIIENDPHQLIEGIILACYAIGAKQA 120

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG-YDVDIIVHHGAGAYICGEETALLE 180
           FIY RGEF    + L+ A+ E    G L +      + V IIVH GAGAYI GEETA L 
Sbjct: 121 FIYCRGEFFEGNKKLRLAIQEAKKRGYLEAPLGEANFSVSIIVHPGAGAYIAGEETAQLN 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +  PRLKPPFPA  GLY  PT VNNVE++  V  I+ RG  WY   G+  N GTK
Sbjct: 181 SLEGYRATPRLKPPFPAVSGLYEKPTVVNNVETLCNVVHIVNRGVEWYQSIGKPKNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +F +SGHV  P   E  + I   E++E+   G         A  PGGSS   L    +  
Sbjct: 241 IFQVSGHVQNPGCFEFPLGIPLKEVLERA--GWMLPGHQFKACYPGGSSCSLLTERDL-D 297

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D +    S LGTA++IVMD STD++K   RL  FY++ESCG+CTPCREGT W  +
Sbjct: 298 TPMDFDSVAAKKSMLGTASIIVMDDSTDMVKVANRLMEFYQNESCGKCTPCREGTRWTKQ 357

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++ R++ G     ++  +  + + +E  + C L   AA PI   I+ FR   E  I +
Sbjct: 358 ILTRILAGRGTVGDLKTIERICQQMEMDSFCPLAPGAALPIVSAIREFRGEFESYIMR 415


>gi|209551211|ref|YP_002283128.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536967|gb|ACI56902.1| NADH dehydrogenase (quinone) [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 518

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 151/414 (36%), Positives = 220/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+     G+    SL+D  S G    + + +      ++ EV  SGLRGRGGAG
Sbjct: 98  FLKEQARLTFARCGITDPLSLADYESHGGLAGLRRAVSMTSAEVVKEVTDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     D   Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVLDAVGD-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y R E+     ++ AAV     +G+LG S    G   DI V  GAGAY+CGEETAL
Sbjct: 217 KGYVYTRSEYPHAIAAMTAAVGIARQAGILGLSVLGSGRAFDIEVRTGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RG
Sbjct: 277 LNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V Y    E +  ++  +++++  GG   G   + AV  GG      P   +
Sbjct: 337 TIPLQIAGNVRYAGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEAFAAKDGLIGHAGLVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +   +++  GI  ++   LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VETADKIAHGIEPEKNRALLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508


>gi|91975104|ref|YP_567763.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5]
 gi|91681560|gb|ABE37862.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5]
          Length = 518

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 148/413 (35%), Positives = 218/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +  +S+ D  + G +  ++  L    D II++V  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFVRCGIVDPRSIDDYRAHGGYRGLEHALRMSSDAIIDDVVKSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG KW  + +       Y+  NADE + GT  DR +M  +P  +IEG  IA  A+GA  
Sbjct: 158 PTGTKWRTVAQAGRG-QKYICCNADEGDSGTFADRMLMEGDPFMVIEGMTIAGIAVGATK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E++ AA++    +G LG +     D  DI V  GAGAYICGEET++L
Sbjct: 217 GYIYIRSEYPHAVEAMNAAIEAARRTGYLGDHICHSTDSFDIEVRVGAGAYICGEETSML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA+ GL+G P+ +NNV + + VP IL  GA  Y+  G   +RGT
Sbjct: 277 ESLEGKRGTVRAKPPLPAHKGLFGRPSVINNVLTFSAVPYILDGGAQAYADCGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K   + G+V +    E +  IT  ELI++  GG       + AV  GG      P   + 
Sbjct: 337 KPIQLGGNVKHGGLFEVAFGITLGELIDEIGGGT-LSGRPVRAVQVGGPLGAYFPRA-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   V+V D + D+ K       F   ESCG+CTPCR G+    
Sbjct: 395 DTPFDYEAFAARSGMVGHGGVVVFDDTVDMAKQARFAMEFCAIESCGKCTPCRIGSTRGA 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++++++ G     +I +L ++   ++  ++CALG  A  P+   + +F    
Sbjct: 455 EMVDKIIAGDKPAADIAVLEDLCNTMKFGSLCALGGLAPIPVLSALTHFPEDF 507


>gi|330720274|gb|EGG98633.1| NAD-dependent formate dehydrogenase beta subunit [gamma
           proteobacterium IMCC2047]
          Length = 526

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 150/418 (35%), Positives = 221/418 (52%), Gaps = 7/418 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F         S+      G +  ++K L +    I++ VK SGLRGRGGA F
Sbjct: 108 LKKQQRLTFARAGVTDPVSIEAYQQHGGFVGLEKALAQSGQAIVDAVKESGLRGRGGAAF 167

Query: 61  STGMKWSFMPK---VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
             G+KW  +            Y+V NADE + GT  DR +M  +P  LIEG  IA  A+G
Sbjct: 168 PAGIKWQTVHDCGLEEESPQKYIVCNADEGDSGTFADRMVMEGDPLMLIEGMTIAGLAVG 227

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A   +IY+R E+   ++ L  A+   Y SG LG+N    G +  + V  GA AYICGEET
Sbjct: 228 AEQGYIYLRSEYPVAQQILNEAMANAYESGFLGNNIQDSGRNFHLEVRMGAAAYICGEET 287

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           +LLESLEGK+G  R KPP PA  GL+G PT VNNV ++A VP IL  GA  Y+ +G   +
Sbjct: 288 SLLESLEGKRGMVRFKPPLPAIEGLFGKPTVVNNVLTLAAVPFILAEGAKAYADYGMGRS 347

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           RGT  F ++G++     +E +   T  EL+++  GG   G   + A+  GG     LP  
Sbjct: 348 RGTLPFQLAGNIQQGGLIELAFGTTLRELLDEFGGGTASG-KPMRAIQVGGPLGAYLPES 406

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           Q  G  +DY+    + + LG   ++V D S D+ +       F   ESCG+CTPCR G+ 
Sbjct: 407 Q-WGTELDYEAFAAIDAVLGHGGIVVFDDSVDMAEQARFSMEFCVAESCGKCTPCRVGST 465

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
             + V++++ +G  +     LL ++ + +   ++CA+G    +P+   + +F    E 
Sbjct: 466 RGVEVIDKIRQGENRVENHILLKDLCETMLHGSLCAMGGMTPFPVMSAVNHFSEDFER 523


>gi|218461918|ref|ZP_03502009.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli Kim
           5]
          Length = 366

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 177/370 (47%), Positives = 235/370 (63%), Gaps = 5/370 (1%)

Query: 57  GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           GAGF TGMKW F+PK    +P YL  NADE EPGT KDR IM  +PH LIEG  ++++AI
Sbjct: 1   GAGFPTGMKWGFVPKRT-GKPTYLCCNADEGEPGTFKDRIIMERDPHQLIEGLAVSAYAI 59

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEE 175
           GA  A++Y+RGE++     L+ A+ E +A G LG       ++  + +H GAGAYICGEE
Sbjct: 60  GAETAYVYIRGEYVTAIRRLEQAIAEAHAKGYLGKRILGSDFNFAVHIHCGAGAYICGEE 119

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TA+LESLEGK+ QPRLKPPFPA  GLY  PT +NNVE++A VP I+ RGA W+ G G + 
Sbjct: 120 TAMLESLEGKRAQPRLKPPFPAVAGLYASPTVINNVETLACVPHIVMRGADWFRGIGPDK 179

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           + G KL+ +SG V+ P   E  M I   EL+E H GG+      + AVIPGG S P +P 
Sbjct: 180 SPGPKLYCLSGQVHKPGLYELPMGIPLRELVENHAGGV-LPGRRIKAVIPGGVSAPVIPE 238

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +    MD+D L   GS LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG 
Sbjct: 239 HGLE-VRMDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGL 297

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            W ++V+ R+  G     +++ L  + K I G T CALGD AA  ++  + +FR      
Sbjct: 298 NWTVKVLRRIETGEGAAGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFVAH 357

Query: 416 IDQYHRCNFQ 425
           I++ HRC F 
Sbjct: 358 IEE-HRCPFH 366


>gi|206603893|gb|EDZ40373.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 634

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 159/424 (37%), Positives = 236/424 (55%), Gaps = 7/424 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGF 60
           L ++  +FT L   + + L        +  ++ +L+ G  +    +++ SG+ GRGG  F
Sbjct: 182 LANEPVVFTGLRAEKTRYLERYREDHGYRALESLLKTGDAEAAFEQIRLSGVAGRGGGAF 241

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               K   + K     P YLV NADE EPGT KDR IM  +PH+LIEG  IA+  IGA  
Sbjct: 242 PMYRKLDAVRKNPP--PRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGAEE 299

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            FIY+R E+      L+ A+ E   +GLLG       +   + ++ GAGAYICGEET+L+
Sbjct: 300 GFIYLRSEYPHSFHILEKAIAEARNAGLLGPRILGSDFSFRLRLYRGAGAYICGEETSLI 359

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+  PR KPP  + VGL+G PT   NVE++A +P+ILR G  WY+  G   + GT
Sbjct: 360 NSLEGKRAYPRNKPPHLSEVGLWGKPTEEQNVETLANLPSILRNGGDWYARLGDVKSPGT 419

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SGH+  P   E  + ++   LIE   GGI GG  +L  ++P GS+   L    + 
Sbjct: 420 KLFCLSGHIARPGLYEIPLGMSLRSLIEDLGGGIPGG-RSLKGLLPAGSASKMLLPRHL- 477

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY  + E+G+ LG+A+VIVMD S  ++   + ++ F  HESCGQCTPCR+GT  + 
Sbjct: 478 DLSLDYPSIAEVGAFLGSASVIVMDDSVCMVDLAYWIAAFSHHESCGQCTPCRDGTEDVY 537

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ ++++G  +   +DLL  +   +   +IC LG +A       ++ F    +  I   
Sbjct: 538 EILLKIIQGEGKPAYLDLLKSIGTYMREASICGLGQSAPNIPLSSMEYFEDEWKAHIVD- 596

Query: 420 HRCN 423
           H C 
Sbjct: 597 HVCP 600


>gi|148653492|ref|YP_001280585.1| NADH-quinone oxidoreductase subunit F [Psychrobacter sp. PRwf-1]
 gi|148572576|gb|ABQ94635.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter sp. PRwf-1]
          Length = 537

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/404 (39%), Positives = 236/404 (58%), Gaps = 9/404 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            L+   S   ++ +   LEK    + + +KA+ +RGRGGAGF+ G+KW+FM       P 
Sbjct: 69  DLATYQSLRGFEGLKTALEKAPKEVGDMIKAANVRGRGGAGFNAGLKWTFMT-PPDGGPR 127

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   P  LIEG +I + AIGA   +I++RGE+I   E L A
Sbjct: 128 YLICNADEMEPGTFKDRLLMERLPFQLIEGMLITAHAIGATDGYIFIRGEYILAAERLMA 187

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+DEC A+ L+G N     +  ++ VH GAG YICGEETAL+  LEG++  PR KPPFP 
Sbjct: 188 AIDECLANNLMGDNILGSEFSFNLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQ 247

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCT 253
             G +G PT VNNVE+++ +P I+  G  WY       G     GTK+F  SG VN P  
Sbjct: 248 VSGAWGRPTVVNNVETLSNMPAIMINGVEWYQSLPNEKGNSTTPGTKIFGCSGLVNDPGL 307

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E+IE   GG++     L A +PGG+S   L    +    MD+D +++ GS
Sbjct: 308 WELPFGYTAREIIEDFAGGMK-DGKRLKAWLPGGASTDFLTTEHL-DVAMDFDSIQKAGS 365

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +GT  ++V+D S D++  +  L +F++ ESCG CTPCR+G  W ++++  +  G  Q+ 
Sbjct: 366 RMGTGLIMVVDESQDMVPLLKNLEIFFQRESCGFCTPCRDGLPWGVKLLTAIDDGQGQQG 425

Query: 374 EIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +++ L  +++++  G+T CA    A  P+   +K FR   + +I
Sbjct: 426 DVEKLEGLTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFDSKI 469


>gi|288817441|ref|YP_003431788.1| NADH dehydrogenase I chain F [Hydrogenobacter thermophilus TK-6]
 gi|288786840|dbj|BAI68587.1| NADH dehydrogenase I chain F [Hydrogenobacter thermophilus TK-6]
 gi|308751048|gb|ADO44531.1| NADH dehydrogenase (quinone) [Hydrogenobacter thermophilus TK-6]
          Length = 423

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 160/395 (40%), Positives = 229/395 (57%), Gaps = 11/395 (2%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           + + +  G +  ++K +    + I++ V  S LRGRGGAGF TG KW F  +  +  P Y
Sbjct: 31  IEEYLKDGGYQALEKAINMSPEEIVDWVDKSQLRGRGGAGFPTGKKWKFAIQNPA--PRY 88

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+ NADESEPGT KDR ++  +PH LIEG +I+++A+GA+ AFIY+RGE+      L+ A
Sbjct: 89  LICNADESEPGTFKDRVLLERDPHLLIEGMIISAYALGANQAFIYIRGEYPAAYYILKDA 148

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           ++E    G LG +    G+D++I V  GAGAYICGEE+AL+ESLEGK+G PR KPPFP  
Sbjct: 149 IEEAKKKGFLGKDILGSGFDLEIYVAKGAGAYICGEESALIESLEGKRGFPRTKPPFPVQ 208

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
            GL+G PT VNNVE++  +P I++ G   Y   G  +  G KLF +SG V  P   E  M
Sbjct: 209 YGLFGRPTVVNNVETLCNIPFIIKLGWEDYRYIGPSDYPGPKLFPVSGKVKKPGVYELPM 268

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
           + T  E++ K+ GG                ++ C  A ++    MDY  L       GT 
Sbjct: 269 NTTLREVVYKYAGGTINNKKVKAVFS---GALDCFSADEL-DTPMDYSPL----GFGGTG 320

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            VIV+     I++   +++ FY HESCGQCTPCR GT     ++E+++KG A +R+ +  
Sbjct: 321 TVIVLTEEDSIVEMCLKVAEFYAHESCGQCTPCRVGTYEQANLLEKIMKGTATERDWEGF 380

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
             V+  I+  +IC LG  A   I+  +K F    E
Sbjct: 381 DFVNSYIQPTSICGLGAVAGRLIRQTMKKFPEEWE 415


>gi|296140856|ref|YP_003648099.1| NADH-quinone oxidoreductase, F subunit [Tsukamurella paurometabola
           DSM 20162]
 gi|296028990|gb|ADG79760.1| NADH-quinone oxidoreductase, F subunit [Tsukamurella paurometabola
           DSM 20162]
          Length = 446

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 205/419 (48%), Positives = 267/419 (63%), Gaps = 13/419 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP----- 70
           +  +L+   + G +  +D+ L    D +I  VK +GLRGRGGAGF TG+KWSF+P     
Sbjct: 17  EPWTLASYRASGGYTGIDRALAMTPDQVIELVKEAGLRGRGGAGFPTGLKWSFIPQLRAG 76

Query: 71  ---KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
              K  +D+PHYLVVNADESEPGTCKD  +M   PHTLIEG +IAS+AI A  AFIYVRG
Sbjct: 77  EEPKPGADKPHYLVVNADESEPGTCKDMPLMFATPHTLIEGVIIASYAIRARQAFIYVRG 136

Query: 128 EFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E +  +  L+AAV E YA+G LG      G+ VD++VH GAGAYICGEETALL+SLEG++
Sbjct: 137 EVLGVQRRLRAAVAEAYAAGYLGKPLGENGFTVDLVVHGGAGAYICGEETALLDSLEGRR 196

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPRL+PPFPA  GLY  PT VNNVESIA VP IL  GA W+   G E + G  L+S+SG
Sbjct: 197 GQPRLRPPFPAVAGLYASPTCVNNVESIASVPAILANGADWFRTMGSEKSPGFTLYSVSG 256

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV  P   E ++ IT  E++E   G        L    PGGSS P L A  +    +DY+
Sbjct: 257 HVVRPGQYEAALGITLREMLELAGG--VRPGHELKFWTPGGSSTPLLTAEHL-DVPLDYE 313

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G+   GS LGT A+ + D +  +++A+ R   FY HESCG+CTPCREGT W++R++ RL 
Sbjct: 314 GVAGAGSMLGTKALQIFDDTVCVVRAVLRWLEFYAHESCGKCTPCREGTYWLVRLLRRLE 373

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +G  +  ++  L +V+  + G+  CALGD AA PIQ  +  FR   E  + +   C F 
Sbjct: 374 QGEGEPEDLTTLADVADGVLGKAFCALGDGAASPIQSSLTYFREEYERHVHERG-CPFD 431


>gi|320354158|ref|YP_004195497.1| NADH dehydrogenase subunit F [Desulfobulbus propionicus DSM 2032]
 gi|320122660|gb|ADW18206.1| NADH dehydrogenase subunit F [Desulfobulbus propionicus DSM 2032]
          Length = 423

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 191/415 (46%), Positives = 267/415 (64%), Gaps = 4/415 (0%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q ++ +  + +     +  +   G +  +DK+     + +I  VKASGLRGRGGAGF TG
Sbjct: 2   QVKVLSARFDIPDAHKIEVAKEHGAYATLDKVFAMQPEEVIELVKASGLRGRGGAGFPTG 61

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KWSF+PK   D+P YL VN+DESEP T KDR I+  +PH LIEG +I  +AI +H A+I
Sbjct: 62  LKWSFLPKNI-DKPVYLAVNSDESEPATFKDRYILVRDPHMLIEGIIICCYAIKSHAAYI 120

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+RGE+  + ++LQAA+DE YA+G LG       Y +D+ VH GAGAY+CGEETALLES+
Sbjct: 121 YIRGEYTTQVKALQAAIDEAYAAGYLGDTIAGKDYKLDVTVHRGAGAYVCGEETALLESI 180

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EG+KGQPR KPPFPA  GLYGCPT +NNV+SIA +P IL  G+  Y  +G E + GT LF
Sbjct: 181 EGRKGQPRSKPPFPAVEGLYGCPTIINNVQSIASLPFILANGSDAYKAYGTEKSPGTHLF 240

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            ISG V  P   E  + +   E+I+K  GG+R G   L  VIPGGSS P L   + +   
Sbjct: 241 GISGLVKKPGMYELPLGLPLLEVIDKVAGGVRDGRK-LKGVIPGGSSTPVLTPEEAQTVT 299

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           +DY+ +    +  G+  ++V+D + D++K +  L  FY HESCGQCTPCREG GWM++++
Sbjct: 300 LDYESMAAHKTMFGSGGIVVLDDTVDMVKLVENLIYFYHHESCGQCTPCREGLGWMLKIV 359

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +++++G     +IDLL E+  NIE +T+C L  A     +  +  FR   E  ++
Sbjct: 360 KKIIRGEGTIADIDLLTELCDNIEMKTVCVLSAACTMSTRSYLNKFRHEFEAYVN 414


>gi|134295064|ref|YP_001118799.1| NADH dehydrogenase (quinone) [Burkholderia vietnamiensis G4]
 gi|134138221|gb|ABO53964.1| formate dehydrogenase beta subunit [Burkholderia vietnamiensis G4]
          Length = 525

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 220/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D ++      +   L    D   + +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLAHDGLAGLKNALAMDGDAACDTLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQAAA-TQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+    ++L+ A++    +G LG++     +  D+ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIKTLETALERAREAGWLGAHVLGSAHAFDLHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GLYG PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLYGKPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+  + GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYAAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R+I LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRNGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|219681533|ref|YP_002467918.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471214|ref|ZP_05635213.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624376|gb|ACL30531.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 444

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/407 (38%), Positives = 242/407 (59%), Gaps = 7/407 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77
           + +   +  + ++ K L E   + +IN VK SGL+GRGGAGFSTG+KWS M +  S    
Sbjct: 26  IKEYCDKNGYLSLKKALKEMLPEDVINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRE 85

Query: 78  -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YL+ NADE EPGT KDR ++   PH LIEG +++++A+    A+I++RGE+++    L
Sbjct: 86  RGYLICNADEMEPGTYKDRLLIEKIPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHIL 145

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + ++ E    G +G N     +++++++H GAG YICGEETAL+ SLEG++  PR KPPF
Sbjct: 146 KQSIQEAINFGFIGLNILGSNFNIELVLHTGAGRYICGEETALINSLEGRRANPRSKPPF 205

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT VNNVE+++ VP I+  G SWY    + ++ GTKL   SG+V  P   E
Sbjct: 206 PAVFGLWGKPTCVNNVETLSNVPCIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWE 265

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E +  G++ G+ +L A  PGG+    L    +    MD+  + + GS L
Sbjct: 266 LPFGTTAREILEDYAHGMKSGF-SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRL 323

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D  T ++  ++ +  F+  ESCG CTPCR+G  W++++++ L +    K ++
Sbjct: 324 GTALSMAVDDKTSMVSLVYNIEKFFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDV 383

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
             L ++  ++  G+T CA    A  P+Q  IK FR   E  I+   R
Sbjct: 384 KNLEKLCSHLSPGKTFCAHAPGAIEPLQSAIKYFRSEFESGINIRKR 430


>gi|296159983|ref|ZP_06842803.1| NADH dehydrogenase (quinone) [Burkholderia sp. Ch1-1]
 gi|295889729|gb|EFG69527.1| NADH dehydrogenase (quinone) [Burkholderia sp. Ch1-1]
          Length = 521

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 150/414 (36%), Positives = 223/414 (53%), Gaps = 6/414 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + + + L+   D     +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSIDDYIAHGGLEGLRQALQTDGDAACEALIESGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 158 PAGIKWRTVRGAKA-AQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETAL 178
             IYVR E+     +L+AA+ +  A+G LG +      +  ++ V  GAGAY+CGEETAL
Sbjct: 217 GHIYVRSEYPHSIATLEAAITKARAAGWLGDSVLGSTAHRFELFVAKGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA VGL+G PT +NNV ++A VP I  RGA++Y  FG   +RG
Sbjct: 277 LESLEGKRGIVRAKPPVPALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G+V     VE +  +T  EL+  + GG   G     AV  GG     LP  Q 
Sbjct: 337 TLPFQLAGNVKQGGLVELAFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQ- 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDY+    +G+ +G   ++V D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 395 WDIPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + V+ R+  G    R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 455 VEVIGRIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHFPEDF 508


>gi|15616778|ref|NP_239990.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11133964|sp|P57256|NUOF_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|25285047|pir||D84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain F [imported] -
           Buchnera sp. (strain APS)
 gi|10038841|dbj|BAB12876.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 444

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 156/407 (38%), Positives = 242/407 (59%), Gaps = 7/407 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77
           + +   +  + ++ K L E   + +IN VK SGL+GRGGAGFSTG+KWS M +  S    
Sbjct: 26  IKEYCDKNGYLSLKKALKEMLPEDVINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRE 85

Query: 78  -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YL+ NADE EPGT KDR ++   PH LIEG +++++A+    A+I++RGE+++    L
Sbjct: 86  RGYLICNADEMEPGTYKDRLLIEKIPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHIL 145

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + ++ E    G +G N     +++++++H GAG YICGEETAL+ SLEG++  PR KPPF
Sbjct: 146 KQSIQEAINFGFIGLNILGSNFNIELVLHTGAGRYICGEETALINSLEGRRANPRSKPPF 205

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT VNNVE+++ VP I+  G SWY    + ++ GTKL   SG+V  P   E
Sbjct: 206 PAVFGLWGKPTCVNNVETLSNVPCIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWE 265

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E +  G++ G+ +L A  PGG+    L    +    MD+  + + GS L
Sbjct: 266 LPFGTTAREILEDYAHGMKSGF-SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRL 323

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D  T ++  ++ +  F+  ESCG CTPCR+G  W++++++ L +    K ++
Sbjct: 324 GTALSMAVDNKTSMVSLVYNIEKFFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDV 383

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
             L ++  ++  G+T CA    A  P+Q  IK FR   E  I+   R
Sbjct: 384 KNLEKLCSHLSPGKTFCAHAPGAIEPLQSAIKYFRSEFESGINIRKR 430


>gi|227542298|ref|ZP_03972347.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181898|gb|EEI62870.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 454

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 186/409 (45%), Positives = 248/409 (60%), Gaps = 6/409 (1%)

Query: 8   IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I +  +G      +     RG +  +   L      +++ +  SGLRGRGGAGF  G KW
Sbjct: 25  ILSANWGDPTPWKIESYEQRGGYQALRTALAMEPKELVDLILDSGLRGRGGAGFPVGRKW 84

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P V + +P YLVVN DESEPGTCKD  ++   PHTL+EG +I+  A  +  AFIY+R
Sbjct: 85  SFVP-VDNPKPKYLVVNGDESEPGTCKDMPLLMATPHTLVEGAIISCLAFHSEHAFIYLR 143

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE +     LQAA+ E Y  G  G N    G  V I VH GAGAYICGEETALL+SLEGK
Sbjct: 144 GEVVHIARRLQAAIQEAYRKGYAGENIMGSGKTVHIQVHSGAGAYICGEETALLDSLEGK 203

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PRL+PPFPA  GLY  PT +NNVESI+ VP I+R GA WY+  G E ++G  ++S+S
Sbjct: 204 RGHPRLRPPFPAVEGLYASPTVINNVESISSVPAIVRNGAEWYTQVGTEKSKGATIYSLS 263

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV +P   E  + IT  ELI+   G        L    PGGSS   L A  +    +DY
Sbjct: 264 GHVTHPGQYEAPLGITLRELIDMAGG--IREGHTLKYFTPGGSSTQMLTAEHL-DVPLDY 320

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L+E GS LGT A+ + D +T +++   R   FYKHESCG+CTPCREGT W++++++RL
Sbjct: 321 EALREAGSMLGTKALQIFDDTTSVVRTTTRFVEFYKHESCGKCTPCREGTWWLLQLLQRL 380

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            +G  +  ++D L  +  +I GR+ CAL D A   +   + NFR   E 
Sbjct: 381 ERGEGKPGDVDKLISICDHIGGRSFCALADGAVACVTSAVANFREEFEA 429


>gi|150398096|ref|YP_001328563.1| NADH dehydrogenase (quinone) [Sinorhizobium medicae WSM419]
 gi|150029611|gb|ABR61728.1| NADH dehydrogenase (quinone) [Sinorhizobium medicae WSM419]
          Length = 518

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 151/414 (36%), Positives = 218/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   SL D  + G    +++ +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKRQTRLTFARCGVIDPLSLDDYRAHGGLRGLERAVVMQPAAIVAEVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +       Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVLETP-GARKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      + AAV+   A+G+LG S     +  D+ V  GAGAY+CGEET+L
Sbjct: 217 KGYIYTRSEYPHAIAVMSAAVEIARAAGVLGTSVLGSAHAFDMEVRTGAGAYVCGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+  PT +NNV S+A VP IL +GA +Y  FG   +RG
Sbjct: 277 LNSLEGKRGLVRAKPPLPAHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E +  +T  E++++  GG   G   + AV  GG      P   +
Sbjct: 337 TIPLQIAGNVRHGGLFETAFGLTLGEIVDEIGGGTASGRP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGSIRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + V + +  GI  ++   LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VEVADAIAAGIEPEKNRVLLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508


>gi|227488703|ref|ZP_03919019.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091364|gb|EEI26676.1| NADH dehydrogenase I chain F [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 454

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 186/409 (45%), Positives = 248/409 (60%), Gaps = 6/409 (1%)

Query: 8   IFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I +  +G      +     RG +  +   L      +++ +  SGLRGRGGAGF  G KW
Sbjct: 25  ILSANWGDPTPWKIESYEQRGGYQALRTALTMEPKELVDLILDSGLRGRGGAGFPVGRKW 84

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P V + +P YLVVN DESEPGTCKD  ++   PHTL+EG +I+  A  +  AFIY+R
Sbjct: 85  SFVP-VDNPKPKYLVVNGDESEPGTCKDMPLLMATPHTLVEGAIISCLAFHSEHAFIYLR 143

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE +     LQAA+ E Y  G  G N    G  V I VH GAGAYICGEETALL+SLEGK
Sbjct: 144 GEVVHIARRLQAAIQEAYRKGYAGENIMGSGKTVHIQVHSGAGAYICGEETALLDSLEGK 203

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PRL+PPFPA  GLY  PT +NNVESI+ VP I+R GA WY+  G E ++G  ++S+S
Sbjct: 204 RGHPRLRPPFPAVEGLYASPTVINNVESISSVPAIVRNGAEWYTQVGTEKSKGATIYSLS 263

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           GHV +P   E  + IT  ELI+   G        L    PGGSS   L A  +    +DY
Sbjct: 264 GHVTHPGQYEAPLGITLRELIDMAGG--IREGHTLKYFTPGGSSTQMLTAEHL-DVPLDY 320

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           + L+E GS LGT A+ + D +T +++   R   FYKHESCG+CTPCREGT W++++++RL
Sbjct: 321 EALREAGSMLGTKALQIFDDTTSVVRTTTRFVEFYKHESCGKCTPCREGTWWLLQLLQRL 380

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            +G  +  ++D L  +  +I GR+ CAL D A   +   + NFR   E 
Sbjct: 381 ERGEGKPGDVDKLISICDHIGGRSFCALADGAVACVTSAVANFREEFEA 429


>gi|307316385|ref|ZP_07595829.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti AK83]
 gi|306898225|gb|EFN28967.1| NADH dehydrogenase (quinone) [Sinorhizobium meliloti AK83]
          Length = 518

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 147/414 (35%), Positives = 217/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   SL D  +      +++ +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKRQTRLTFARCGVIDPLSLEDYRAHRGLLGLERAIAMQPAAIVAEVTESGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +       Y+V NADE + GT  DR IM  +P  LIEG  IA  A  A 
Sbjct: 158 FPTGIKWKTVLEA-RGPRKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATSAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      + AA++   A+G+LG++     +  D+ V  GAGAY+CGEET+L
Sbjct: 217 KGYIYTRSEYPHAIAVMSAAIEIARAAGVLGASVLGSAHAFDMEVRTGAGAYVCGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+  PT +NNV S+A VP IL +GA +Y  FG   +RG
Sbjct: 277 LNSLEGKRGLVRAKPPLPAHKGLFDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E +  +T  E++++  GG       + AV  GG      P   +
Sbjct: 337 TIPLQIAGNVKHGGLFETAFGLTLGEIVDEIGGGTASARP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A  +V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYEAFAARDGLIGHAGTVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + V +R+  GI  ++  +LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VEVADRIAAGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508


>gi|221632800|ref|YP_002522022.1| NAD-dependent formate dehydrogenase subunit beta [Thermomicrobium
           roseum DSM 5159]
 gi|221156040|gb|ACM05167.1| NAD-dependent formate dehydrogenase beta subunit [Thermomicrobium
           roseum DSM 5159]
          Length = 574

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 146/412 (35%), Positives = 230/412 (55%), Gaps = 6/412 (1%)

Query: 13  YGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
             +  +S+ D ++ G +    K L E   + +I EVKAS LRGRGGAGF TG+KW    +
Sbjct: 150 GIIDPESIEDFIAIGGYRAFLKALFEMTPEEVIAEVKASNLRGRGGAGFPTGIKWESGRR 209

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
             + RP Y+VVN+ E EP   KDR ++   PH ++EG +I  +A+   C + Y+ GE   
Sbjct: 210 TPA-RPKYVVVNSHEGEPNVFKDRRLLESNPHLVLEGLLIGCYALETPCGYNYIGGEHAL 268

Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
             +  Q AV++ Y  GLLG +    G+   + +  G GAYICGE +AL+ ++ G++GQPR
Sbjct: 269 ALQRFQRAVEQAYELGLLGDDILGSGFSCHVRIRTGGGAYICGEGSALMYAIMGQRGQPR 328

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
            KPP     GL+  PT +NN E+ A +P I++ G SWY+  G + + GTKL ++ G V Y
Sbjct: 329 TKPPRSVEEGLWRRPTVLNNTETFASIPAIIQNGGSWYASLGTKESTGTKLVTMQGPVKY 388

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
               E    ++  ELI    GG+R G+  L  +  GG S   L   ++    +D++ L  
Sbjct: 389 LGVAEIEFGLSMRELIFDVFGGLREGY-RLKGIQTGGVSAGPLREDEL-DVPIDFEALTP 446

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           +G+ +G+   +  D S   +     L  F ++ESCG+CTPCR GT  ++ +++R+  G  
Sbjct: 447 LGAMVGSGGFVAFDESVCAVDFARYLVAFSRYESCGKCTPCRLGTPALVEILDRIRHGFG 506

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +  ++D++   SK+I   ++C LG  A  P+ G+++ FR    E I +  RC
Sbjct: 507 RPEDLDIIQYASKHIIELSLCGLGQVAPMPLLGMLERFRDEFIEHITE-RRC 557


>gi|93005407|ref|YP_579844.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter
           cryohalolentis K5]
 gi|92393085|gb|ABE74360.1| NADH-quinone oxidoreductase, F subunit [Psychrobacter
           cryohalolentis K5]
          Length = 474

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 161/406 (39%), Positives = 235/406 (57%), Gaps = 9/406 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            L+   S   ++ +   L +  D  +N +K + ++GRGGAGF  G+KWS M       P 
Sbjct: 54  DLATYESLRGFEALKIALNQSPDDTLNTIKEAVVKGRGGAGFPAGIKWSLMA-PPDGGPR 112

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV NADE EPGT KDR +M   P  LIEG +I+++AIGA   +I++RGE+I   E L A
Sbjct: 113 YLVCNADEMEPGTFKDRLLMERLPLQLIEGMLISAYAIGATAGYIFIRGEYILAAERLTA 172

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E  A+ L+G N     +  D+ VH GAG YICGEETAL+  LEG++  PR KPPFP 
Sbjct: 173 AIEELKANNLVGDNILGSDFSFDLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQ 232

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCT 253
             G +G PT VNNVE++  V  I+  G+ WY       G     GTKLF  SG VN P  
Sbjct: 233 VAGAWGRPTVVNNVETLHNVSAIILHGSKWYQDLPKAKGVVETPGTKLFGCSGLVNDPGL 292

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E+IE   GG+      L A +PGG+S   L A  +   ++D+D +++ GS
Sbjct: 293 WELPFGYTAREIIEDFAGGM-QEGRTLKAWLPGGASTDFLTAEHL-DTVVDFDTIQKAGS 350

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +GT  ++V+D   D++  +  L +F++ ESCG CTPCR+G  W ++++  +  G  Q  
Sbjct: 351 RMGTGLLMVVDEEQDMVPLVRNLEIFFQRESCGWCTPCRDGLPWGVKILTAINDGEGQIG 410

Query: 374 EIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +++ L  +++++  G+T CA    A  P+   IK FRP  +++I Q
Sbjct: 411 DVEKLEGLTRDLWIGKTFCAHAPGAMEPLMSAIKYFRPEFDQKIAQ 456


>gi|289548717|ref|YP_003473705.1| NADH dehydrogenase (quinone) [Thermocrinis albus DSM 14484]
 gi|289182334|gb|ADC89578.1| NADH dehydrogenase (quinone) [Thermocrinis albus DSM 14484]
          Length = 425

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/399 (41%), Positives = 234/399 (58%), Gaps = 11/399 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
            S+ + +  G +  ++K L    + I++ V  S LRGRGGAGF TG KW    +  +  P
Sbjct: 29  HSIEEYLKDGGYQALEKALSMKPEEIVDWVDKSQLRGRGGAGFPTGRKWKLAVQNPA--P 86

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADESEPGT KDR ++  +PH LIEG VI+++AIGA+ AFIY+RGE+      L+
Sbjct: 87  RYLICNADESEPGTFKDRILIERDPHLLIEGIVISAYAIGANEAFIYIRGEYPAGYRILR 146

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E    G +G N    G+D++I V  GAGAYICGEE+AL+ESLEGK+G PR+KPP+P
Sbjct: 147 DAIEEARKKGFVGKNILGSGFDLEIYVARGAGAYICGEESALIESLEGKRGWPRIKPPYP 206

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT VNNVE++  +P I+  G   Y   G  +  G KLF +SG V  P   E 
Sbjct: 207 VQYGLFGRPTVVNNVETLCNIPIIVGMGWEEYRYIGPSDYPGPKLFPVSGKVKKPGVYEL 266

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M+ T  E+I K+ GG  G       +     ++ C  A ++    MDY          G
Sbjct: 267 PMNTTLREVIFKYAGGTIGNKKVKAVLS---GALDCFSADEL-DTPMDYSPF----GFGG 318

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T  VIV+    DI++A  +++ FY HESCGQCTPCR GT     ++ER+VKG+A +++ D
Sbjct: 319 TGTVIVLTEEDDIVEACLKVAEFYAHESCGQCTPCRVGTHEQEYLLERIVKGVADEKDWD 378

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
               V++ I+  +IC LG  A   I+  ++ F    E  
Sbjct: 379 AFVFVNRYIQPTSICGLGAVAGRLIKQAMEKFPEEWERY 417


>gi|91065093|gb|ABE03925.1| NuoF+E [Theonella swinhoei bacterial symbiont clone pSW1H8]
          Length = 639

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 179/415 (43%), Positives = 251/415 (60%), Gaps = 8/415 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           ++ ++      +L      G ++  ++ L       +I+EVK SGLRGRGGAGF TG+KW
Sbjct: 217 MYRHVGVEGSHTLDYYRGHGGYEAAERALTRLSPAEVIDEVKVSGLRGRGGAGFPTGVKW 276

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SFMP     R  +++ NADESEPG+ KDR I+  +PH LIEG +IA  AI A    IY+R
Sbjct: 277 SFMP-PVDGRQRFILCNADESEPGSFKDRYILEDDPHQLIEGMIIAGHAISATLGVIYIR 335

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+      L+AA+ E  A+GLLG        D ++I+H GAGAYICGEETAL+ S EG 
Sbjct: 336 GEYYLGYRRLRAAIAEARAAGLLGRGLFGTEIDFELILHRGAGAYICGEETALMNSFEGL 395

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +  PRLKPPFPA +G+YG PTT+NNV ++  V  I+ +GA+W++  G E+++GTKL+ IS
Sbjct: 396 RANPRLKPPFPAQLGIYGLPTTINNVTTLTSVVHIIGQGAAWFAAIGSEDSKGTKLYQIS 455

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP-AGQMRGAIMD 304
           G V  P   E  +  TF ELI    GG         A IPGGSS P LP         MD
Sbjct: 456 GPVERPGVYELPLGATFRELIFDLAGGPTM---PAKAFIPGGSSAPMLPFEDAYLDTPMD 512

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-WMMRVME 363
           Y  L E+GS LGT  VIV+     ++ AI+ L  FY HESCG+CTPCREG   W+ ++ +
Sbjct: 513 YGSLAELGSMLGTGGVIVIPEEKCMVSAIYNLVRFYAHESCGKCTPCREGVATWLPKLYQ 572

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +L+ G+    ++ L+ E++ +++G   C L D+ A P++    +FR   E  +++
Sbjct: 573 KLLAGLGSAGDLTLIEELAHHLKGTAFCLLADSCALPVEASFAHFRSEYEHLVER 627


>gi|328543746|ref|YP_004303855.1| NADH dehydrogenase (Quinone) [polymorphum gilvum SL003B-26A1]
 gi|326413490|gb|ADZ70553.1| NADH dehydrogenase (Quinone) [Polymorphum gilvum SL003B-26A1]
          Length = 525

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 156/422 (36%), Positives = 218/422 (51%), Gaps = 5/422 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+     G+    SL D  + G    + K +      I+  V ASGLRGRGGAG
Sbjct: 102 FLARQTRLTFARCGITDPLSLDDYRALGGLAGLQKAVAMPPAEIVETVTASGLRGRGGAG 161

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +       Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA 
Sbjct: 162 FPTGIKWKTVLEAAGP-QKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGIATGAT 220

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+R E+      ++ AVD     G+LG       +  D+ +  GAGAY+CGEETAL
Sbjct: 221 RGYVYLRSEYPDAIAVMREAVDRARRHGVLGPRVLGSPHAFDMEIRVGAGAYVCGEETAL 280

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ G  G PT VNNV S+A VP IL RGA++Y  FG   +RG
Sbjct: 281 LNSLEGKRGVVRAKPPLPAHHGFLGRPTVVNNVISLASVPIILDRGAAFYRDFGMGRSRG 340

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V Y    E +  +T  E+++   GG   G   + AV  GG      P   +
Sbjct: 341 TIPIQIAGNVRYGGLFETAFGLTLGEIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-L 398

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A V+V D S D++        F   ESCG+CTPCR G    
Sbjct: 399 FDTPFDYEEFARRDGLIGHAGVVVFDDSVDMLSQARFAFEFCAVESCGKCTPCRIGAVRG 458

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + V +R+  G   + +I L+ ++   ++  ++CALG    +P+   + +FR   + R  +
Sbjct: 459 VEVADRIAAGQDPEAQIALIADLCTTMKHGSLCALGGFTPYPVMSALTHFRQDFQPRSPR 518

Query: 419 YH 420
            H
Sbjct: 519 SH 520


>gi|330815877|ref|YP_004359582.1| Formate dehydrogenase, beta subunit [Burkholderia gladioli BSR3]
 gi|327368270|gb|AEA59626.1| Formate dehydrogenase, beta subunit [Burkholderia gladioli BSR3]
          Length = 524

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 144/413 (34%), Positives = 219/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + + + L         E+  SGLRGRGGA F
Sbjct: 102 LKKQQRLTFARIGITDPLSIDDYLAHGGLEGLRRALTLDGAAACEELIESGLRGRGGAAF 161

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 162 PAGIKWRTVRQAQA-TQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGVVTGATQ 220

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A++   A+G LG++    G   ++ V  GAGAY+CGEETALL
Sbjct: 221 GHIYVRSEYPHAIAALNQAIERARAAGWLGADVLGSGRAFELFVAKGAGAYVCGEETALL 280

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA +Y  +G   +RGT
Sbjct: 281 ESLEGKRGVVRAKPPLPALQGLHGQPTVINNVITLATAPIIFARGAQFYRDYGMGRSRGT 340

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  EL+ +  GG   G     A   GG     LP  Q  
Sbjct: 341 LPFQLAGNIRQGGLVELAFGVTLRELLFEFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F  HESCG+CTPCR G+   +
Sbjct: 399 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMQFCVHESCGKCTPCRIGSTRGV 458

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL E+   +   ++CA+G    +P+   + +F    
Sbjct: 459 ETIARIRAGDTSERQVHLLRELCDTMMAGSLCAMGGMTPYPVLSALDHFPEDF 511


>gi|332971174|gb|EGK10138.1| NADH-quinone oxidoreductase subunit F [Psychrobacter sp.
           1501(2011)]
          Length = 537

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 160/404 (39%), Positives = 234/404 (57%), Gaps = 9/404 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            L    S   ++ +   L K    + + +KA+ +RGRGGAGF+ G+KW+FM       P 
Sbjct: 69  DLETYQSLRGFEGLKTALSKAPKEVGDMIKAANVRGRGGAGFNAGLKWTFMT-PPDGGPR 127

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M   P  LIEG +I + AIGA   +I++RGE+I   E L A
Sbjct: 128 YLICNADEMEPGTFKDRLLMERLPFQLIEGMLITAHAIGATDGYIFIRGEYIVAAERLMA 187

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+DEC A+ L+G N     +  ++ VH GAG YICGEETAL+  LEG++  PR KPPFP 
Sbjct: 188 AIDECLANNLMGDNILGSDFSFNLHVHTGAGRYICGEETALINCLEGRRANPRTKPPFPQ 247

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVNYPCT 253
             G +G PT VNNVE+++ +P IL  G  WY       G     GTK+F  SG VN P  
Sbjct: 248 VSGAWGRPTVVNNVETLSNMPAILINGVEWYQSLPNEKGNTTTPGTKIFGCSGLVNDPGL 307

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E     T  E+IE   GG++ G   L A +PGG+S   L    +    MD+D +++ GS
Sbjct: 308 WELPFGYTAREIIEDFAGGMKQG-KRLKAWLPGGASTDFLTTEHL-DVPMDFDTIQKAGS 365

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +GT  ++V+D S D++  +  L +F++ ESCG CTPCR+G  W ++++  +  G  +  
Sbjct: 366 RMGTGLIMVVDESQDMVPLLKNLEIFFQRESCGFCTPCRDGLPWGVKLLTAIDDGQGKVG 425

Query: 374 EIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           +++ L  +++++  G+T CA    A  P+   +K FR   + +I
Sbjct: 426 DVEKLEGLTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFDSKI 469


>gi|328953792|ref|YP_004371126.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328454116|gb|AEB09945.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 610

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 166/425 (39%), Positives = 250/425 (58%), Gaps = 9/425 (2%)

Query: 4   DQD--RIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60
           DQD   +F NL  +   SL D  ++G ++ + K +    +   INEVK +G+RGRGGAGF
Sbjct: 188 DQDNMVLFANLDRIDPMSLDDYRAKGGYEGLKKAVTSMSQVDAINEVKTAGVRGRGGAGF 247

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KWSF  +     P Y+V NADE EPGT KDR IM  +PH ++EG  +A +A+GA  
Sbjct: 248 PAGLKWSFT-QPSPIIPKYIVCNADEGEPGTIKDRYIMEGDPHRVLEGMALAGYAVGASH 306

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVRGE+      LQ A+D+   +G LG N     +   I V  G GAY+CGEETAL+
Sbjct: 307 GYIYVRGEYYLSMLRLQNAIDQAMQNGCLGKNIFGSDFSFTIEVQSGGGAYVCGEETALI 366

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR+KPPFP  VG++G P+ VNNVE+++ +P I+ +G  WY   G E+  GT
Sbjct: 367 ESIEGKRGNPRVKPPFPGQVGVWGKPSIVNNVETLSSIPMIISKGGEWYKAKGTEDATGT 426

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F + GHVN P  +E  + +T  ELI+++ GGIRGG     A   GG+S   +   Q+ 
Sbjct: 427 KIFQVVGHVNQPGVIEADLGMTVRELIDRYGGGIRGG-KKFKACQTGGASFGFITEDQL- 484

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              M+Y  +  +   LG+  ++VMD  T I+  +  +  F++HESCG C PCR GT  + 
Sbjct: 485 DTPMEYKAMGAIEGALGSGTMLVMDEDTCIVDVVKCILYFFQHESCGFCLPCRRGTRILY 544

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++ ++  G  ++ ++D + +V++ +     CAL  +  + I+  I+ +R      ++  
Sbjct: 545 DLICKIADGRGEEADLDKMIKVAQVMADSANCALAMSPIFFIKTTIERYRDDYLAHLN-- 602

Query: 420 HRCNF 424
             C  
Sbjct: 603 GTCPL 607


>gi|219682089|ref|YP_002468473.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621822|gb|ACL29978.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085900|gb|ADP65982.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086473|gb|ADP66554.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 444

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 156/407 (38%), Positives = 242/407 (59%), Gaps = 7/407 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77
           + +   +  + ++ K L E   + +IN VK SGL+GRGGAGFSTG+KWS M +  S    
Sbjct: 26  IKEYCDKNGYLSLKKALKEMLPEDVINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRE 85

Query: 78  -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YL+ NADE EPGT KDR ++   PH LIEG +++++A+    A+I++RGE+++    L
Sbjct: 86  RGYLICNADEMEPGTYKDRLLIEKIPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHIL 145

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + ++ E    G +G N     +++++++H GAG YICGEETAL+ SLEG++  PR KPPF
Sbjct: 146 KQSIQEAINFGFIGLNILGSNFNIELVLHTGAGRYICGEETALINSLEGRRANPRAKPPF 205

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT VNNVE+++ VP I+  G SWY    + ++ GTKL   SG+V  P   E
Sbjct: 206 PAVFGLWGKPTCVNNVETLSNVPCIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWE 265

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E +  G++ G+ +L A  PGG+    L    +    MD+  + + GS L
Sbjct: 266 LPFGTTAREILEDYAHGMKSGF-SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRL 323

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D  T ++  ++ +  F+  ESCG CTPCR+G  W++++++ L +    K ++
Sbjct: 324 GTALSMAVDDKTSMVSLVYNIEKFFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDV 383

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
             L ++  ++  G+T CA    A  P+Q  IK FR   E  I+   R
Sbjct: 384 KNLEKLCSHLSPGKTFCAHAPGAIEPLQSAIKYFRSEFESGINIRTR 430


>gi|311087054|gb|ADP67134.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 444

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 156/407 (38%), Positives = 242/407 (59%), Gaps = 7/407 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP- 77
           + +   +  + ++ K L E   + +IN VK SGL+GRGGAGFSTG+KWS M +  S    
Sbjct: 26  IKEYCDKNGYLSLKKALKEMLPEDVINIVKESGLKGRGGAGFSTGLKWSLMSQNHSYTRE 85

Query: 78  -HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YL+ NADE EPGT KDR ++   PH LIEG +++++A+    A+I++RGE+++    L
Sbjct: 86  RGYLICNADEMEPGTYKDRLLIEKIPHQLIEGIILSAYALNVSRAYIFLRGEYVQAEHIL 145

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + ++ E    G +G N     +++++++H GAG YICGEETAL+ SLEG++  PR KPPF
Sbjct: 146 KKSIQEAINFGFIGLNILGSNFNIELVLHTGAGRYICGEETALINSLEGRRANPRSKPPF 205

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  GL+G PT VNNVE+++ VP I+  G SWY    + ++ GTKL   SG+V  P   E
Sbjct: 206 PAVFGLWGKPTCVNNVETLSNVPCIILNGVSWYKNLSKSSDTGTKLMGFSGNVRNPGVWE 265

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  E++E +  G++ G+ +L A  PGG+    L    +    MD+  + + GS L
Sbjct: 266 LPFGTTAREILEDYAHGMKSGF-SLKAWQPGGAGTDFLLEEHL-DLPMDFKNISQAGSRL 323

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D  T ++  ++ +  F+  ESCG CTPCR+G  W++++++ L +    K ++
Sbjct: 324 GTALSMAVDDKTSMVSLVYNIEKFFSRESCGLCTPCRDGLPWIVKILKSLEQNKGHKNDV 383

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
             L ++  ++  G+T CA    A  P+Q  IK FR   E  I+   R
Sbjct: 384 KNLEKLCSHLSPGKTFCAHAPGAIEPLQSAIKYFRSEFESGINIRTR 430


>gi|295677293|ref|YP_003605817.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002]
 gi|295437136|gb|ADG16306.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002]
          Length = 524

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 148/413 (35%), Positives = 220/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L    D     +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALRTDGDAACEALIQSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P+ LIEG VIA    GA  
Sbjct: 158 PAGIKWRTVRGAKA-AQKYVVCNADEGDSGTFSDRLVMESDPYVLIEGMVIAGIVTGATV 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG +    G   ++ V  GAG+Y+CGEETA+L
Sbjct: 217 GYIYVRSEYPHSIATLEAAIARARTAGWLGDSVLSSGQRFELFVAKGAGSYVCGEETAML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA VGLYG PT +NNV ++A VP I  RGA++Y  FG   +RGT
Sbjct: 277 ESLEGKRGIVRAKPPVPALVGLYGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  +L++   GG   G     AV  GG     LP  Q  
Sbjct: 337 LPFQLAGNIKRGGLVELAFGVTLRQLLDDFGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+    +G+ +G   ++V D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 395 DIPMDYEAYAAVGAVIGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+ R+  G    R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 455 EVIARIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHFPEDF 507


>gi|113866668|ref|YP_725157.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
 gi|113525444|emb|CAJ91789.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
          Length = 520

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 152/414 (36%), Positives = 222/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q+R+     G+    SL D  +   +  +++ L      I+ EV  SGLRGRGGA 
Sbjct: 100 FLKQQERLTFARVGITDPLSLDDYRAHEGFAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    S    Y+V NADE + GT  DR +M  +P  LIEG  IA+ A+GA 
Sbjct: 160 FPTGIKWKTVLGAQS-AVKYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAALAVGAE 218

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      L++A+    A+G LG +    G    + V  GAGAY+CGEETAL
Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG++G  R KPP PA  GL+G PT +NNV S+A VP IL RGA +Y  +G   +RG
Sbjct: 279 LESLEGRRGVVRAKPPLPALQGLFGKPTVINNVISLATVPVILARGAQYYRDYGMGRSRG 338

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE++  +T  EL+  + GG R G   + AV  GG     LP  + 
Sbjct: 339 TLPFQLAGNIKQGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESR- 396

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+     G  +G   ++V D + D+ K       F   ESCG+CTPCR G+   
Sbjct: 397 FDVPLDYEAYAAFGGVVGHGGIVVFDETVDMAKQARYAMEFCAIESCGKCTPCRIGSTRG 456

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + VM+R++ G    + + L+ ++   +   ++CA+G    +P+   +  F    
Sbjct: 457 VEVMDRIIAGEQPVKHVALVRDLCDTMLNGSLCAMGGMTPYPVLSALNEFPEDF 510


>gi|209519328|ref|ZP_03268127.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160]
 gi|209500212|gb|EEA00269.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160]
          Length = 524

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 146/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L+   D     +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 158 PAGIKWRTVRGAKA-AQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG +    G   ++ V  GAG+Y+CGEETA+L
Sbjct: 217 GYIYVRSEYPHSIATLEAAIARARKAGWLGDSVLSSGQRFELFVAKGAGSYVCGEETAML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GLYG PT +NN  ++A VP I  RGA++Y  FG   +RGT
Sbjct: 277 ESLEGKRGIVRAKPPVPALAGLYGQPTVINNAITLATVPIIFARGAAFYKDFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  EL++   GG   G     AV  GG     LP  Q  
Sbjct: 337 LPFQLAGNIKRGGLVELAFGVTLRELLDDFGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+    +G+ +G   ++V D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 395 DIPMDYEAYAAVGAVIGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+ R+  G    R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 455 EVIARIRNGDTSTRQVQLLRDLCDTMVAGSLCAMGGMTPYPVLSALDHFPEDF 507


>gi|331696855|ref|YP_004333094.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
 gi|326951544|gb|AEA25241.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
          Length = 499

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 146/413 (35%), Positives = 214/413 (51%), Gaps = 4/413 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           M   Q   F  +  +      D    G  + +   L      ++  V  SGLRGRGGAGF
Sbjct: 89  MRAQQRLTFARVGVVDPADPDDHERHGGLEGLRAALAMDPADVVTAVTDSGLRGRGGAGF 148

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  S    ++  NADE + GT  DR ++  +P TL+ G  IA +A+GA  
Sbjct: 149 PTGVKWKTVAQASS-AVKFVCCNADEGDSGTFADRMLLEGDPFTLLCGMTIAGYAVGASE 207

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+     +++ A+      G LG +    G+  D+ V  GAGAYICGEET++L
Sbjct: 208 GYVYVRSEYPDAVAAVRTAIVAARERGWLGDSVLGSGFAFDVHVRVGAGAYICGEETSML 267

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+A VPTIL  G   Y+  G   +RGT
Sbjct: 268 ESLEGKRGTVRPKPPIPALEGLFGRPTVVNNVLSLASVPTILADGPQAYAALGVGRSRGT 327

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           ++F + G+V     VE +  I+  EL+E   GG       + AV  GG     LP  Q  
Sbjct: 328 QVFQLGGNVARGGVVETAFGISLGELVETFGGGT-LSGRPVRAVQVGGPLGAYLPVEQ-F 385

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+     G+ +G   V+V D + D+         F   ESCG+CTPCR G    +
Sbjct: 386 DLPMDYEAFAASGAMVGHGGVVVFDDTVDMSAMARFAMEFCAEESCGRCTPCRIGAVRGV 445

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++R+  G  ++  + LL ++ + +   ++CA+G     P++  I++F    
Sbjct: 446 ETIDRIRAGEDREANLVLLEDLCELMTDGSLCAMGGLTPLPVRSAIRHFGEDF 498


>gi|78221382|ref|YP_383129.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78192637|gb|ABB30404.1| NADH dehydrogenase subunit F [Geobacter metallireducens GS-15]
          Length = 422

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 171/409 (41%), Positives = 241/409 (58%), Gaps = 8/409 (1%)

Query: 19  SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + ++  + G +  ++K L     + +   V  SGLRGRGGAGF TG KWSF+P+     P
Sbjct: 16  TFAEYRAEGGFAALEKALAGMSPNDVQQVVIDSGLRGRGGAGFPTGKKWSFVPRDIPG-P 74

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ N DE EPGT KDR ++   P++L+EG  +A++AIG   AFI++R  +    E+ +
Sbjct: 75  RYLICNCDEMEPGTYKDRVLLEANPYSLVEGMTLAAYAIGVAHAFIFIRRGYEEAAENCR 134

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ E  A+GLLG N    G+ +++ VH  AG YICGEETAL+ +LEGK+  PR KPPFP
Sbjct: 135 RAIAEAKAAGLLGENILGTGFSLELDVHQSAGRYICGEETALMNALEGKRANPRSKPPFP 194

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255
           A  GL+G PT VNNVE++A +P I+  GA+W+ G  R     G KLF +SGHVN     E
Sbjct: 195 AVKGLWGRPTVVNNVETLANIPAIVANGAAWFKGLARIPEAAGMKLFCVSGHVNNTACFE 254

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + +T  E+I+  CGG+  G +   A IPGG+S P           MD+D + + GS L
Sbjct: 255 LPLGMTLGEIIDGPCGGMLPGRE-FKACIPGGASTPFFTKEHWH-VPMDFDTVAKAGSRL 312

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  ++V DR T ++ A   L VFY  ESCG CTPCREG  ++  V+ R+  G  ++  I
Sbjct: 313 GTGGIVVFDRDTCMVAATLNLIVFYARESCGWCTPCREGLPFVQDVLARIEAGEGREEHI 372

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            +L E  + +   + C L   A  P++GL++ F   I E I    RC F
Sbjct: 373 GILREHIQYL-NYSFCPLAPGAMGPVEGLLRLFEGEIREHIV-LGRCPF 419


>gi|116515042|ref|YP_802671.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256896|gb|ABJ90578.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 438

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 162/406 (39%), Positives = 242/406 (59%), Gaps = 6/406 (1%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-SDRP 77
           + +    G + ++ K L+K   + II  +K SGLRGRGGAGF TG+KW+ M K    ++ 
Sbjct: 28  IHEYCHTGGYQSLKKSLKKLCPEDIILLIKESGLRGRGGAGFPTGIKWNLMLKSNIKEKI 87

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADE EPGT KDR +M   PH LIEG +I +F +   CA+I++RG++    + L 
Sbjct: 88  RYLICNADEMEPGTYKDRFLMERLPHQLIEGIIICAFTLHISCAYIFLRGDYYVAEKILN 147

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            ++DE Y  G LG N    G++ ++ +H GAG YICGEETAL+ SLEG +  PR KPPFP
Sbjct: 148 KSIDEAYQLGYLGKNILNSGFNFNLFLHTGAGRYICGEETALINSLEGLRANPRFKPPFP 207

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           AN GL+G PT +NNVE+++ +P I++ G+ WY    +  + GTKL   SG V  P   E 
Sbjct: 208 ANYGLWGKPTCINNVETLSNIPAIIQHGSEWYKNLSKGKDSGTKLLGFSGKVKNPGLWEL 267

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            + IT  E++E + GG++     L A  PGG+    L    +    MD+   +E+GS LG
Sbjct: 268 PLGITAREVLEDYAGGMKKNL-FLKAWQPGGAGTDILSHKDI-DIKMDFTSFQEIGSRLG 325

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T   + +D + +II  +  + +F+  ESCG CTPCREG  W++++++ L K   +K +I 
Sbjct: 326 TGISMAIDNNINIISLLINIEIFFSRESCGFCTPCREGLPWIVKLLKNLEKKNGKKEDIK 385

Query: 377 LLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +L E+  ++  G+T CA    A  P++  +K FR   E  I +  +
Sbjct: 386 ILDELCISLGPGKTFCAHAPGAISPLKSALKLFRNEFENSIYKNKK 431


>gi|227497899|ref|ZP_03928079.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
 gi|226832691|gb|EEH65074.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
          Length = 452

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 192/415 (46%), Positives = 249/415 (60%), Gaps = 15/415 (3%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + D++R           +L    + G ++ + K      + ++N VK+S LRGRGGAGF 
Sbjct: 29  MWDKER---------SWTLEAYRANGGYEGLAKAKTMSAEELVNYVKSSNLRGRGGAGFP 79

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSF+P     +P YLVVNADESEPGTCKD   +   P  LIEG  I   AIG   A
Sbjct: 80  TGLKWSFLP-APDGKPRYLVVNADESEPGTCKDIPTIMANPQALIEGIAITCRAIGGDHA 138

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG--YDVDIIVHHGAGAYICGEETALL 179
           F+Y+RGE       L  AV E   SGLL +   L     + I  H GAGAYICGEETALL
Sbjct: 139 FVYLRGEVTHVYRRLLHAVREATGSGLLDTGFGLDGNQPLRITAHAGAGAYICGEETALL 198

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEG++G PRLKPPFPA  GLY  PT VNNVE+IA VP IL RGA WY+  G E ++G 
Sbjct: 199 DSLEGRRGHPRLKPPFPAVAGLYARPTVVNNVETIASVPGILARGADWYNAMGTERSKGH 258

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
            +FS+SGHV +P   E    IT  +LIE   G        L   +PGGSSVP     ++ 
Sbjct: 259 GIFSVSGHVKHPGQFEAPFGITMRQLIEMAGG--VREGHELKFWVPGGSSVPIFGPEEL- 315

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ +   GS LGT A+ V D +  +++ + R + FY+HESCG+CTPCREGT WM 
Sbjct: 316 DVPLDYESVGAAGSMLGTRALQVFDETVSVVRVVTRWTEFYQHESCGKCTPCREGTYWMR 375

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           ++M RL  G     +++ L +++ NI GR+ CALGDAAA P++  I  FR   E 
Sbjct: 376 QIMLRLEAGQGLPGDVEKLEDIAGNIAGRSFCALGDAAATPVRSGIARFRSEFEA 430


>gi|296112936|ref|YP_003626874.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis RH4]
 gi|295920630|gb|ADG60981.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis RH4]
          Length = 472

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/418 (38%), Positives = 235/418 (56%), Gaps = 11/418 (2%)

Query: 11  NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            LY      +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM
Sbjct: 50  RLYHHDALLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
                    YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE+
Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +   + LQ A++EC A+ LLG       ++  + VH GAG YICGEETAL+  LEG++  
Sbjct: 169 VLAAKRLQNAINECVANHLLGDGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRAN 228

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244
           PR KPPFP   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +
Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLDLPKAKGKSTTPGTKIMGV 288

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303
           SG V      E     T  ELIE   G       +L A +PGG+S   L A  +    +M
Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D + + GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++
Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406

Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +  G AQ  +ID L E+++++  G+T CA    A  P+   +K FR   E++++   
Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464


>gi|326567951|gb|EGE18048.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC1]
          Length = 472

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/418 (38%), Positives = 235/418 (56%), Gaps = 11/418 (2%)

Query: 11  NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            LY      +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM
Sbjct: 50  RLYHHDALLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
                    YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE+
Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +   + LQ A++EC A+ LLG       ++  + VH GAG YICGEETAL+  LEG++  
Sbjct: 169 VLAAKRLQNAINECVANHLLGDGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRAN 228

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244
           PR KPPFP   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +
Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLDLPKAKGKSTTPGTKIMGV 288

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303
           SG V      E     T  ELIE   G       +L A +PGG+S   L A  +    +M
Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D + + GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++
Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406

Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +  G AQ  +ID L E+++++  G+T CA    A  P+   +K FR   E++++   
Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWIGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464


>gi|326577021|gb|EGE26916.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis
           101P30B1]
          Length = 472

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 159/418 (38%), Positives = 235/418 (56%), Gaps = 11/418 (2%)

Query: 11  NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            LY      +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM
Sbjct: 50  RLYHHDALLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
                    YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE+
Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +   + LQ A++EC A+ LLG       ++  + VH GAG YICGEETAL+  LEG++  
Sbjct: 169 VLAAKRLQNAINECVANHLLGDGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRAN 228

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244
           PR KPPFP   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +
Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGV 288

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303
           SG V      E     T  ELIE   G       +L A +PGG+S   L A  +    +M
Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D + + GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++
Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406

Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +  G AQ  +ID L E+++++  G+T CA    A  P+   +K FR   E++++   
Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464


>gi|254166582|ref|ZP_04873436.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|289596482|ref|YP_003483178.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469]
 gi|197624192|gb|EDY36753.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|289534269|gb|ADD08616.1| NADH dehydrogenase (quinone) [Aciduliprofundum boonei T469]
          Length = 404

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/399 (39%), Positives = 239/399 (59%), Gaps = 7/399 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              ++ D +++G +  + K LE G+D II+EV+ SGL GRGGA F TG+K  F+ K    
Sbjct: 6   DASNVEDYLAQGGFKALRKALEYGQDEIISEVETSGLLGRGGAAFPTGLKMKFVRKERK- 64

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P Y+V NADE EPGT KDR +M   P+ ++EG +I+++AIGA   F Y+R E+    + 
Sbjct: 65  TPKYIVANADEGEPGTFKDRVLMERNPYQILEGMIISAYAIGAKKGFFYIRYEYKEIAKD 124

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           ++  ++E    G+LG N     +  DI +  GAGAY+CGEETAL+ES+EGK+G PR+KPP
Sbjct: 125 IERKIEELRRLGILGPNIYGSKFSFDIELVVGAGAYVCGEETALMESIEGKRGYPRIKPP 184

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           +PA  GL+G PT +NNVE++A VP ++  G + YS  G+E   G KLFS+SG V  P   
Sbjct: 185 YPAQYGLWGKPTLINNVETLANVPLVMSMGGANYSKLGKEGCTGPKLFSVSGFVKNPGVY 244

Query: 255 EESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           E ++   T  E+IE   G +         V+ GG +   +   +     + +   KE G 
Sbjct: 245 EANLGEKTIGEMIELAGGVVG----KFKGVMLGGGAAGFILTEEYLDMPLCFKDAKERGL 300

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT  +IV + S +I   +  ++ F++HESCGQC PCR GT  M  ++E++V+G  +K 
Sbjct: 301 FLGTGDIIVFNESVNIWDILLNIAKFFEHESCGQCFPCRYGTKRMREIIEKIVRGDGRKE 360

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +I+ L   +K ++  ++C LG +A    +  +KNFR  +
Sbjct: 361 DIEKLNATAKAMKIASLCPLGTSAMLAYESAMKNFREEL 399


>gi|89055050|ref|YP_510501.1| NADH dehydrogenase (quinone) [Jannaschia sp. CCS1]
 gi|88864599|gb|ABD55476.1| formate dehydrogenase beta subunit [Jannaschia sp. CCS1]
          Length = 500

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 148/413 (35%), Positives = 215/413 (52%), Gaps = 6/413 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q+R+ F     +   SL++  + G    + + LE   + I   V  SGLRGRGGAG
Sbjct: 85  FYASQNRLTFQRCGVIDPLSLAEYEAHGGLTGLRRALEMTPEQITTHVTESGLRGRGGAG 144

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW+ + +       Y+V NADE + GT  DR IM  +P  LIEG VIA   +GA 
Sbjct: 145 FPTGIKWNTVRQADGP-QKYIVCNADEGDSGTFADRMIMEGDPFCLIEGMVIAGLGVGAT 203

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+    E +++A++    + +LG      ++ DI V  GAGAY+CGEET+LL
Sbjct: 204 KGYIYLRSEYPDAIEVMESAIEITRENNVLGHVLHSEHEFDIEVRVGAGAYVCGEETSLL 263

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G  R KPP PA  G  G PT VNNV S+A VP I  +GA  Y+ FG   ++GT
Sbjct: 264 NSLEGKRGVVRAKPPLPALEGFLGRPTVVNNVISLATVPVIFEKGAEHYASFGLGRSKGT 323

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+VN+    E +  +   EL+    GG   G   + AV  GG         +  
Sbjct: 324 MPVQIAGNVNHGGLFETAFGMPLGELVNDIAGGSATGRP-VKAVQVGGPLGAYFGPEK-F 381

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
                Y+     G  +G A V+V D S D++        F   ESCG+CTPCR G    +
Sbjct: 382 DTPFAYEPFDGAGGLIGHAGVVVFDDSADMLGMARFAMEFCAIESCGKCTPCRIGAVRGV 441

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++R+ +G A    I LL ++ + ++  ++CALG    +P+   ++ F    
Sbjct: 442 ETLDRIREGDATA--IPLLVDLCETMKDGSLCALGGFTPYPVMSALEQFPEEF 492


>gi|326574011|gb|EGE23960.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis CO72]
          Length = 472

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/418 (37%), Positives = 235/418 (56%), Gaps = 11/418 (2%)

Query: 11  NLYGLQG-KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            LY      +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM
Sbjct: 50  RLYHHDAVLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
                    YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE+
Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +   + LQ A++EC A+ LLG       ++  + +H GAG YICGEETAL+  LEG++  
Sbjct: 169 VLAAKRLQNAINECVANHLLGDGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRAN 228

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244
           PR KPPFP   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +
Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGV 288

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303
           SG V      E     T  ELIE   G       +L A +PGG+S   L A  +    +M
Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D + + GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++
Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406

Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +  G AQ  +ID L E+++++  G+T CA    A  P+   +K FR   E++++   
Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464


>gi|326577453|gb|EGE27337.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis O35E]
          Length = 472

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 158/418 (37%), Positives = 235/418 (56%), Gaps = 11/418 (2%)

Query: 11  NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            LY      +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM
Sbjct: 50  RLYHHDALLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
                    YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE+
Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +   + LQ A++EC A+ LLG       ++  + +H GAG YICGEETAL+  LEG++  
Sbjct: 169 VLAAKRLQNAINECVANHLLGDGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRAN 228

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244
           PR KPPFP   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +
Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGV 288

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303
           SG V      E     T  ELIE   G       +L A +PGG+S   L A  +    +M
Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D + + GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++
Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406

Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +  G AQ  +ID L E+++++  G+T CA    A  P+   +K FR   E++++   
Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464


>gi|307544488|ref|YP_003896967.1| NADH dehydrogenase (quinone) [Halomonas elongata DSM 2581]
 gi|307216512|emb|CBV41782.1| NADH dehydrogenase (quinone) [Halomonas elongata DSM 2581]
          Length = 510

 Score =  425 bits (1093), Expect = e-117,   Method: Composition-based stats.
 Identities = 157/415 (37%), Positives = 229/415 (55%), Gaps = 5/415 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F+ +      S++D ++   +  ++  L      I++EVK SGLRGRGGA F
Sbjct: 99  LARQQRLTFSRIGVTDPLSIADYLALDGFRGLETALTLEPQAIVDEVKTSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    SD   Y+V NADE + GT  DR  M  +P+ LIEG  IA  A+GA  
Sbjct: 159 PTGIKWQTVHDAPSD-QKYIVCNADEGDSGTFADRLAMECDPYMLIEGMAIAGLAVGATQ 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+      L  A+     +G LG++    G   D+ V  GAGAYICGEET+LL
Sbjct: 218 GYIYLRSEYPLAHRILDEAIARAEQAGYLGADIRGSGRRFDLEVRLGAGAYICGEETSLL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT VNNV S+A VP IL RG   Y+ +G   +RGT
Sbjct: 278 ESLEGKRGMVRYKPPLPAIEGLFGRPTVVNNVLSLAAVPYILDRGGEAYANYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V     VE +   T  EL+E   GG       L AV  GG     LP  Q  
Sbjct: 338 LALQLAGNVKRGGLVELAFGTTLRELMEDFGGGT-FTERPLRAVQVGGPLCAYLPESQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+G+G   V++ D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DLPLDYETFASVGAGVGHGGVVMFDDSVDMAEQARFSMEFCAVESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            V++R++    +   ++LL E+ + +E  ++CA+G    +P++ ++ +F   ++ 
Sbjct: 456 EVIDRILANQDRDANLELLDELCETMEDGSLCAMGGMTPFPVKSVMTHFPDDLQR 510


>gi|186475493|ref|YP_001856963.1| NADH dehydrogenase (quinone) [Burkholderia phymatum STM815]
 gi|184191952|gb|ACC69917.1| NADH dehydrogenase (quinone) [Burkholderia phymatum STM815]
          Length = 518

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 146/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S  D ++ G    +   L    D  +  +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSTDDYIANGGIVGLYNALAMTGDAAVEALIESGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +D   Y+V NADE + GT  DR +M  +P  LIEG +IA    GA  
Sbjct: 158 PAGIKWRTVRAANAD-QKYIVCNADEGDSGTFSDRLVMESDPFVLIEGMIIAGIVTGATV 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L+ A+ +  A+G LG +     +  ++ V  GAGAY+CGEETALL
Sbjct: 217 GHIYVRSEYPHSIATLEEAIGKARAAGWLGDSVLGSEHRFELFVAKGAGAYVCGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A VP I  +GA++Y  FG   +RGT
Sbjct: 277 ESLEGKRGIVRAKPPLPALEGLFGKPTVINNVITLATVPIIFAKGAAFYKDFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F I+G+V     VE +   T  EL+  + GG   G     AV  GG     LP  Q  
Sbjct: 337 LPFQIAGNVKQGGLVELAFGCTLRELMFDYGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+   ++G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 395 DIPLDYEEYAKVGAVVGHGGLVIHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+  G    +++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 455 EVIQRIRNGDTSTKQVQLLRDLCDTMVSGSLCAMGGMTPFPVVSALDHFPEDF 507


>gi|171059432|ref|YP_001791781.1| NADH dehydrogenase (quinone) [Leptothrix cholodnii SP-6]
 gi|170776877|gb|ACB35016.1| NADH dehydrogenase (quinone) [Leptothrix cholodnii SP-6]
          Length = 523

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 146/417 (35%), Positives = 220/417 (52%), Gaps = 9/417 (2%)

Query: 2   LTDQDRIF-TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+    +      SL+D  + G W  + + L+   D I   V  SGLRGRGGA F
Sbjct: 100 LARQQRLTCVRMGVTDPLSLTDYATHGGWAGLRQALQMPADGIWQTVLDSGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +D   Y+V NADE + GT  DR ++  +P+ LIEG  IA+ A GA  
Sbjct: 160 PAGIKWRTVAQAQAD-QKYVVCNADEGDSGTFADRMVLEDDPYLLIEGMTIAALACGATR 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+    +    A++    +G LG N    G+  ++ V  GAG+Y+CGEETA+L
Sbjct: 219 GYVYVRSEYPLAVQVFGEAIERARTAGYLGDNILGSGHAFELEVRMGAGSYVCGEETAML 278

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV + A  P IL  GA  Y   GR  + GT
Sbjct: 279 ESLEGKRGIVRAKPPIPALSGLFGQPTVINNVLTFAAAPWILSHGAQAYKDHGRGRSTGT 338

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  EL+    GG   G   + AV  GG     LP  Q  
Sbjct: 339 LPFQLAGNIARGGLVELAFGVTLRELVFDWGGGSASGRP-VKAVQVGGPLGTYLPESQ-W 396

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   ++V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 397 DIPLDYEAYAAVGAVVGHGGLVVHDDTADLSKLARYAMAFCAIESCGKCTPCRIGSTRGV 456

Query: 360 RVMERLVKGIA----QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+V        +++++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 457 EVIDRIVTNHHQPAVREQQVKLLRDLCDTMVSGSLCAMGGMTPYPVLSALNHFPADF 513


>gi|302038847|ref|YP_003799169.1| NADH-quinone oxidoreductase subunit F [Candidatus Nitrospira
           defluvii]
 gi|300606911|emb|CBK43244.1| NADH-quinone oxidoreductase, subunit F [Candidatus Nitrospira
           defluvii]
          Length = 425

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 172/412 (41%), Positives = 248/412 (60%), Gaps = 7/412 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              +   +  G ++   K L E   + I+ E+K +GLRGRGGAGF TG KW  +      
Sbjct: 8   PWEIDPYLKTGGYEAWRKCLKELTPNDIVGEIKKAGLRGRGGAGFPTGTKWDKVL-NHRV 66

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +  Y V NA E EPGT KDR +++H PH LIEGC+IAS  + A  ++IYV  E+  E  +
Sbjct: 67  QERYFVCNAGEHEPGTFKDRHLLKHIPHQLIEGCLIASRTVNAKASYIYVNHEYAEEEAN 126

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ A+ +    GLLG N    G D+D+ V+ G G+Y+ GEETA+LES++G+   PR KPP
Sbjct: 127 LRKAITQARERGLLGKNILGTGVDLDLEVYSGHGSYVAGEETAMLESMQGRPAMPRQKPP 186

Query: 195 F-PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           F P + GLYG PT VNNVE++  +P IL+ GA+W++  G E   GT LFS+SG VN P  
Sbjct: 187 FYPTDFGLYGKPTLVNNVETLCNIPQILKNGAAWFTQVGTEKCPGTMLFSLSGSVNRPGV 246

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  M +T  +LIE   GG+  G   + AV PGG +   + A Q+    MD+D LK+ G+
Sbjct: 247 YEMPMGVTIRDLIETCGGGVPNGRK-IKAVFPGGPAFSMVTADQL-DLPMDFDSLKKAGT 304

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           GLG+A  IV+D +T ++ A  + S F+K ESCGQC PCR GT  +  +M+++ +G   ++
Sbjct: 305 GLGSAGTIVIDDATCMVAATLKYSNFFKGESCGQCPPCRMGTINLATLMDKIERGEGSRK 364

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ++D L ++   ++G   C L   AA  +Q  ++ F+   EE I +  RC FQ
Sbjct: 365 DLDSLLQLCGFVKGTGYCTLITGAAVLVQSSLRLFQHEFEEHI-RLQRCPFQ 415


>gi|70733835|ref|YP_257475.1| formate dehydrogenase subunit beta [Pseudomonas fluorescens Pf-5]
 gi|68348134|gb|AAY95740.1| formate dehydrogenase, beta subunit [Pseudomonas fluorescens Pf-5]
          Length = 519

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 156/417 (37%), Positives = 232/417 (55%), Gaps = 10/417 (2%)

Query: 2   LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q R+     G+    SL+D  + G ++ + + +  G +  +  V  SGLRGRGGA F
Sbjct: 98  LKNQQRLLFARAGITRPLSLADYRAHGGFEGLTRSIALGGEQTVAAVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +      +  Y+V NADE + GT  DR +M  +P  LIEG  IA  A+GA  
Sbjct: 158 PAGIKWRTVRDTPP-QQKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMAIAGLAVGASY 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+ +   +L+ A+D    +G LG+N+   G   D+ V  GAGAYICGEETALL
Sbjct: 217 GYIYVRSEYPQAVATLREALDIARDAGYLGANAGGSGQAFDMEVRVGAGAYICGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +SLEGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA +Y  +G   + GT
Sbjct: 277 DSLEGKRGIVRAKPPIPALQGLFGQPTLVHNVLTLASVPLILAKGAPFYRDYGMGRSLGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V +   VE +  +T  EL+E + GG   G   L A   GG     +P  Q  
Sbjct: 337 MPFQLAGNVRHGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSQ-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    MG+ LG   V+V D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPLDYEAFAAMGAMLGHGGVVVADDSLDLARMARFALQFCAEESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVK----GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++RL+     G   ++ + +L ++   ++  ++CALG   ++P+   +K+F    
Sbjct: 455 EVIDRLLAAPDQGRRDEQAL-ILKDLCDTLQYGSLCALGGMTSYPVASALKHFPADF 510


>gi|319795811|ref|YP_004157451.1| NADH dehydrogenase (quinone) [Variovorax paradoxus EPS]
 gi|315598274|gb|ADU39340.1| NADH dehydrogenase (quinone) [Variovorax paradoxus EPS]
          Length = 519

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    S++D  +   +  + + L    + ++ +V  SGLRGRGGA F
Sbjct: 100 LKKQERLTFARMGITDPVSVADYEAHEGYAGLRRALGLKPEEVVQQVLDSGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR  M  +P  L+EG  IA  A GA  
Sbjct: 160 PAGIKWKTVMATPA-AQKYIVCNADEGDSGTFSDRMTMEGDPLMLVEGMTIAGIATGATK 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+     ++  A+     +G LG N    G    + V  GAG+Y+CGEETALL
Sbjct: 219 GYVYIRSEYPHAIATMNEAIRAAETAGFLGDNILGSGRTFWLEVRKGAGSYVCGEETALL 278

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A VP IL RGA  Y  FG   +RGT
Sbjct: 279 ESLEGKRGIVRAKPPLPAITGLFGQPTLINNVITLASVPLILARGAEHYRDFGVGRSRGT 338

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   VE++  +T  EL+  + GG   G   + AV  GG     LP  Q  
Sbjct: 339 LPMQLAGNIKHGGLVEKAFGVTLRELLYDYGGGSASGRP-IKAVQVGGPLGAYLPESQ-W 396

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G  +G   ++V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 397 DLPLDYEAYAAVGGTVGHGGIVVHDDTADLSKLARYAMEFCAIESCGKCTPCRIGSTRGV 456

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++++     +   + LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 457 EVIDKIRADNKRVEHVILLRDLCNTMVHGSLCAMGGMTPFPVLSALDHFPQDF 509


>gi|222087421|ref|YP_002545958.1| formate dehydrogenase [Agrobacterium radiobacter K84]
 gi|221724869|gb|ACM28025.1| formate dehydrogenase [Agrobacterium radiobacter K84]
          Length = 518

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/414 (35%), Positives = 219/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+ F     ++  SL D    G    + + +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLREQTRLTFARCGVIESLSLEDYEVHGGLKGLRRAVGMAAADIVKEVMDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +         Y+V NADE + GT  DR IM  +P  LIEG  IA  A GA 
Sbjct: 158 FPTGIKWKTVLDAP-GARKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAIAGLATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y R E+      +  AV+    +G+LG++    G   DI +  GAGAY+CGEETAL
Sbjct: 217 KGFVYARSEYPHAIAVMTEAVEVARGAGILGASVLGSGKAFDIEIRTGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RG
Sbjct: 277 LNSLEGKRGIVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMDKGATFYRDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V Y    E +  ++  ++++K  GG   G   + AV  GG      P   +
Sbjct: 337 TIPLQIAGNVKYGGLYETAFGLSLGDIVDKIGGGTATGRP-VKAVQVGGPLGAYFPRA-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPFDYESFAAKDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +   +++ +GI  ++   LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 455 VETADKIARGIEPEKNRVLLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 508


>gi|297570901|ref|YP_003696675.1| NADH-quinone oxidoreductase, F subunit [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931248|gb|ADH92056.1| NADH-quinone oxidoreductase, F subunit [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 441

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 192/414 (46%), Positives = 251/414 (60%), Gaps = 11/414 (2%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTGM 64
           + TN +  +   +L    + G +  + +  +  ++   + N +K SGLRGRGGAGF TG+
Sbjct: 13  VLTNNWDTERPWTLDGYRATGGYQAIARAWDINQEKGALTNLIKESGLRGRGGAGFPTGL 72

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KWSF+P      P YLVVNADESEPGTCKD   +   PH LIEG  I   AIG H  FIY
Sbjct: 73  KWSFLPPEDGG-PRYLVVNADESEPGTCKDIPFLMANPHLLIEGMAICLMAIGGHDGFIY 131

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKL--GYDVDIIVHHGAGAYICGEETALLESL 182
           +RGE +     L AAV E   +G++G+       YD++I VH GAGAYICGEETALL+SL
Sbjct: 132 LRGEVVHVYRRLLAAVREAKEAGIIGTGCGPNGDYDINITVHAGAGAYICGEETALLDSL 191

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG--RENNRGTK 240
           EG +GQPRLKPPFPA  GLY  PT VNNVESIA VP I+  GA W++  G   +N+ G  
Sbjct: 192 EGFRGQPRLKPPFPAVAGLYARPTVVNNVESIASVPGIINNGAEWFTAMGAGTKNSPGHG 251

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SGHV  P   E    IT  EL++   G        L     GGSS P      +  
Sbjct: 252 IFSLSGHVKNPGQFEAPFGITMRELLDMAGG--IREGHELKFFAIGGSSAPLFTPEHL-D 308

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             + Y+ + + GS L T A+ + D +  +++ + R + FY+HESCG+CTPCREGT WM +
Sbjct: 309 VPLGYEEVAQAGSMLATRAIQIFDETVSVVRVVSRWTDFYQHESCGKCTPCREGTFWMRQ 368

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +M R   G   + +IDLLY+V+ NI GR+ CALGDAAA PI+  I  FR   E+
Sbjct: 369 IMHRFEAGQGTEADIDLLYDVASNIAGRSFCALGDAAATPIRSAIDLFRSEFED 422


>gi|170698430|ref|ZP_02889503.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria IOP40-10]
 gi|170136683|gb|EDT04938.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria IOP40-10]
          Length = 525

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 215/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR IM  +P+ LIEG +IA    GA  
Sbjct: 159 PAGIKWRTVRQASA-TQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGITTGATL 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+ A+     +G LG      G+  D+ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGERVLGSGHAFDLHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+  + GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+ +G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|326561160|gb|EGE11525.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis 7169]
 gi|326569469|gb|EGE19529.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC8]
 gi|326572769|gb|EGE22755.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis BC7]
          Length = 472

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 157/418 (37%), Positives = 235/418 (56%), Gaps = 11/418 (2%)

Query: 11  NLYGLQG-KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            LY      +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM
Sbjct: 50  RLYHHDAVLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
                    YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE+
Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +   + L+ A++EC A+ LLG       ++  + +H GAG YICGEETAL+  LEG++  
Sbjct: 169 VLAAKRLKNAINECVANHLLGDGILGTEFNFTLHIHTGAGRYICGEETALINCLEGRRAN 228

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244
           PR KPPFP   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +
Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGV 288

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303
           SG V      E     T  ELIE   G       +L A +PGG+S   L A  +    +M
Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D + + GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++
Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406

Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +  G AQ  +ID L E+++++  G+T CA    A  P+   +K FR   E++++   
Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464


>gi|194288743|ref|YP_002004650.1| NAD-dependent formate dehydrogenase subunit beta [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222578|emb|CAQ68581.1| NAD-dependent formate dehydrogenase beta subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 520

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 152/414 (36%), Positives = 221/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q+R+     G+    SL D  +   +  +++ L      I+ EV  SGLRGRGGA 
Sbjct: 100 FLKRQERLTFARVGITDPLSLDDYRAHEGYAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    +    Y+V NADE + GT  DR +M  +P  LIEG  IA  A+GA 
Sbjct: 160 FPTGIKWKTVLGAQA-AVKYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVGAE 218

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      L++A+    A+G LG +    G    + V  GAGAY+CGEETAL
Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG++G  R KPP PA  GL+G PT +NNV S+A VP IL RGA  Y  +G   +RG
Sbjct: 279 LESLEGRRGVVRAKPPLPALKGLFGQPTVINNVISLATVPVILARGAQCYRDYGMGRSRG 338

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++ +   VE++  +T  EL+  + GG R G   + AV  GG     LP  + 
Sbjct: 339 TLPFQLAGNIRHGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESR- 396

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+     G  +G   ++V D + D+ K       F   ESCG+CTPCR G+   
Sbjct: 397 FDVPLDYEAYAAFGGVVGHGGIVVFDETVDMAKQARYAMEFCAIESCGKCTPCRIGSTRG 456

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + VM+R++ G    R + L+ ++   +   ++CA+G    +P+   +  F    
Sbjct: 457 VEVMDRIIAGEQPVRHVQLVRDLCDTMLNGSLCAMGGMTPYPVLSALNEFPEDF 510


>gi|254482995|ref|ZP_05096230.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [marine
           gamma proteobacterium HTCC2148]
 gi|214036680|gb|EEB77352.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [marine
           gamma proteobacterium HTCC2148]
          Length = 509

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGLQGKS-LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
              Q R+     GL     L   +SR  +D ++  L    + I++EV  SGLRGRGGA F
Sbjct: 99  FAGQQRLTFARSGLDDPLCLDAYLSRHGFDGLEHALHLPPEDIVDEVTRSGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW+ + +   D   Y+  NADE + GT  DR +M  +P+ LIEG  IA  A+GA  
Sbjct: 159 PAGIKWNTVLQAAGD-EKYIACNADEGDSGTFADRLLMESDPYMLIEGMTIAGLAVGAQQ 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E +  A+ +  A+G LG           + +  GAG+YICGEETA+L
Sbjct: 218 GYIYLRSEYPHAWEVMHTAIAKAEAAGYLGEGICDSDRQFHLELRLGAGSYICGEETAML 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG++G  R KPP PA  GL+G PT VNNV ++A +PTI+  GA  Y+  G+  + GT
Sbjct: 278 ESLEGRRGVVRAKPPLPAIEGLFGKPTVVNNVLTLAAIPTIMAGGAEAYAALGQGRSLGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++     VE     T   ++++  GG R G   + A+  GG     LP   + 
Sbjct: 338 ITLQLAGNIKNGGLVEVPYGATLRAVLDQFGGGTRSGRP-IRAIQVGGPLGAYLP-EPLW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+     G  LG   V+V D + D+ +       F   ESCG+CTPCR G+    
Sbjct: 396 DTPLDYEAFAAAGGMLGHGGVVVFDDTVDMAQQARFAMAFCAEESCGKCTPCRVGSVRGT 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            VM+R++   +    + LL ++ + +E  ++CA+G     P++  ++ F    
Sbjct: 456 EVMDRIIARESLDENMALLDDLCETMELGSLCAMGGLTPNPVRSALQYFPEDF 508


>gi|298346123|ref|YP_003718810.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063]
 gi|304390117|ref|ZP_07372071.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315657374|ref|ZP_07910256.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298236184|gb|ADI67316.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063]
 gi|304326599|gb|EFL93843.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315491846|gb|EFU81455.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 442

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/407 (45%), Positives = 243/407 (59%), Gaps = 12/407 (2%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I ++++G+    +L    +RG +  + K        ++  VK SGLRGRGGAGF  G+KW
Sbjct: 19  ILSDMWGVDRSWTLEAYRARGGYQGLAKANSMDPAEVLAAVKNSGLRGRGGAGFPAGLKW 78

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YL VNADESEPGTCKD   +   PH LIEG  I S AI    AF+Y+R
Sbjct: 79  SFLP-PDDGLPRYLTVNADESEPGTCKDIPQIMANPHALIEGMAICSRAIRCEHAFVYLR 137

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE       L AA+ E   +GLLG       D+ I  H GAGAYICGEETALL+SLEG++
Sbjct: 138 GEVTHPLRRLLAAIREATEAGLLG-------DLKITAHSGAGAYICGEETALLDSLEGRR 190

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GLY  PT +NNVE+I+ V  I +   +WY+  G E ++G  +FS+SG
Sbjct: 191 GHPRLKPPFPAAQGLYARPTVINNVETISQVAGIFKYSDNWYAAMGTEKSKGHGIFSVSG 250

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV  P   E    IT  +L+  +CGG+R G D L     GGSS P     ++    + Y+
Sbjct: 251 HVARPGQFEAPFGITMRQLL-GYCGGVRAGHD-LKFWAVGGSSAPIFTPAEL-DVPLTYE 307

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS L T A+ V D +T +++ + R   FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 308 EVAAAGSMLATRAIQVFDETTSVVRVMTRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
            G  +  ++D L  ++  I GR  CALGDAA  P++  I+ FR   E
Sbjct: 368 AGKGEVGDVDKLLSITSEIGGRCFCALGDAAITPVKSGIERFRDEFE 414


>gi|238026515|ref|YP_002910746.1| formate dehydrogenase subunit beta [Burkholderia glumae BGR1]
 gi|237875709|gb|ACR28042.1| Formate dehydrogenase, beta subunit [Burkholderia glumae BGR1]
          Length = 524

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  D + + L         E+  SGLRGRGGA F
Sbjct: 102 LKRQQRLTFARIGITDPLSIDDYLAHGGLDGLKRALTLDGAAACEELIESGLRGRGGAAF 161

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR IM  +P+ LIEG +IA    GA  
Sbjct: 162 PAGIKWRTVRQAQA-TQKYVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVVTGATR 220

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG +    G   ++ V  GAGAY+CGEETALL
Sbjct: 221 GHIYVRSEYPHAIAALNEAIARARAAGWLGESVLGSGLGFELEVAKGAGAYVCGEETALL 280

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 281 ESLEGKRGVVRAKPPLPALEGLHGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGT 340

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  EL+ +  GG   G     A   GG     LP  Q  
Sbjct: 341 LPFQLAGNIRQGGLVELAFGVTLRELLFEFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 398

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 399 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMQFCVLESCGKCTPCRIGSTRGV 458

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   ++++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 459 ETIARIRGGDTSEKQVHLLRDLCDTMMAGSLCAMGGMTPYPVLSALDHFPEDF 511


>gi|315654702|ref|ZP_07907608.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii ATCC
           51333]
 gi|315491166|gb|EFU80785.1| NADH-quinone oxidoreductase subunit F [Mobiluncus curtisii ATCC
           51333]
          Length = 442

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 184/407 (45%), Positives = 243/407 (59%), Gaps = 12/407 (2%)

Query: 8   IFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I ++++G+    +L    +RG +  + K        ++  VK SGLRGRGGAGF  G+KW
Sbjct: 19  ILSDMWGVDRSWTLEAYRARGGYQGLAKANSMDPAEVLAAVKNSGLRGRGGAGFPAGLKW 78

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P      P YL VNADESEPGTCKD   +   PH LIEG  I S AI    AF+Y+R
Sbjct: 79  SFLP-PDDGLPRYLTVNADESEPGTCKDIPQIMANPHALIEGMAICSRAIRCEHAFVYLR 137

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           GE       L AA+ E   +GLLG       D+ I  H GAGAYICGEETALL+SLEG++
Sbjct: 138 GEVTHPLRRLLAAIREATEAGLLG-------DLKITAHSGAGAYICGEETALLDSLEGRR 190

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G PRLKPPFPA  GLY  PT +NNVE+I+ V  I +   +WY+  G E ++G  +FS+SG
Sbjct: 191 GHPRLKPPFPAAQGLYARPTVINNVETISQVAGIFKYSDNWYAAMGTEKSKGHGIFSVSG 250

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           HV  P   E    IT  +L+  +CGG+R G D L     GGSS P     ++    + Y+
Sbjct: 251 HVARPGQFEAPFGITMRQLL-GYCGGVRAGHD-LKFWAVGGSSAPIFTPAEL-DVPLTYE 307

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            +   GS L T A+ V D +T +++ + R   FY+HESCG+CTPCREGT WM ++M RL 
Sbjct: 308 EVAAAGSMLATRAIQVFDETTSVVRVMTRWVDFYQHESCGKCTPCREGTYWMKQIMHRLE 367

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
            G  +  ++D L  ++  I GR  CALGDAA  P++  I+ FR   E
Sbjct: 368 AGKGEVGDVDKLLSITSEIGGRCFCALGDAAITPVKSGIERFRDEFE 414


>gi|326561571|gb|EGE11912.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis
           46P47B1]
 gi|326567652|gb|EGE17760.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis
           12P80B1]
          Length = 472

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 159/418 (38%), Positives = 235/418 (56%), Gaps = 11/418 (2%)

Query: 11  NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            LY      +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+FM
Sbjct: 50  RLYHHDALLTLADYETLDGFVGLKNALSKSPKEVGEMIKTANVRGRGGAGFNAGLKWTFM 109

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
                    YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE+
Sbjct: 110 T-PPDGGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEY 168

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +   + LQ A++EC A+ LLG       ++  + VH GAG YICGEETAL+  LEG++  
Sbjct: 169 VLAAKRLQNAINECIANRLLGDGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRAN 228

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSI 244
           PR KPPFP   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +
Sbjct: 229 PRTKPPFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGV 288

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIM 303
           SG V      E     T  ELIE   G       +L A +PGG+S   L A  +    +M
Sbjct: 289 SGRVKDAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVM 346

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D + + GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++
Sbjct: 347 DFDPIMKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILD 406

Query: 364 RLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +  G AQ  +ID L E+++++  G+T CA    A  P+   +K FR   E++++   
Sbjct: 407 AMDNGQAQADDIDKLSELTRDLWIGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 464


>gi|220920302|ref|YP_002495603.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
 gi|219944908|gb|ACL55300.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 519

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 156/416 (37%), Positives = 218/416 (52%), Gaps = 5/416 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   S++D  + G +  + + LE G    ++ VK SGLRGRGGAG
Sbjct: 98  FLARQQRLTFHRCGVVDPVSVADYRAHGGYRGLARALEIGPADTVDAVKVSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW+ +    +D   Y+V NADE + GT  DR +M  +P TLIEG  IA  A+GA 
Sbjct: 158 FPTGIKWNTVMLAEAD-QKYVVCNADEGDSGTFADRMLMEGDPFTLIEGMTIAGVAVGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+R E+    + L+ A+     +G+LG N    G D  + V  GAGAYICGEET+L
Sbjct: 217 RGYIYLRSEYPNAYQILKTAIAAGERAGVLGRNILGSGKDFFLEVRLGAGAYICGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT VNNV S A VP IL  G   Y+ +G   +RG
Sbjct: 277 LESLEGKRGIVRAKPPIPALKGLFGRPTLVNNVLSFAAVPWILEHGGEAYANYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G+V Y   +E +  IT   +IE   GG       + A   GG      P   +
Sbjct: 337 TLPIQLAGNVKYGGLIETAFGITLRAVIEDFGGG-SLSGRPVRAAQVGGPLGAYFP-DVL 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDY+        +G   V+V D + D+ +       F   ESCG+CTPCR G    
Sbjct: 395 FDTPMDYEAFAARKGLVGHGGVVVFDDTVDMARQARFAFEFCAVESCGKCTPCRIGAVRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
              MERL+ G A    + L+ ++ + +   ++CA+G     P+   I +F    + 
Sbjct: 455 RETMERLLAGEAPAEPLRLIEDLCEVMTDGSLCAMGGLTPVPVMSAITHFPEDFDR 510


>gi|115526637|ref|YP_783548.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53]
 gi|115520584|gb|ABJ08568.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53]
          Length = 518

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 226/413 (54%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F        +S+ D  + G ++ + + L    D II++V  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFVRCGVTDPRSIEDYCANGGYEGLQRALALPSDAIIDDVVKSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  ++   Y+  NADE + GT  DR +M  +P+ +IEG  IA  A+GA  
Sbjct: 158 PTGIKWRTVAQTEAEH-KYICCNADEGDSGTFADRMLMEGDPYMVIEGMTIAGIAVGATR 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    ES+ AA+     +G LG       +D DI V  GAGAYICGEET+++
Sbjct: 217 GYIYIRSEYPYAVESMNAAIAGARRAGWLGPGLGRSRHDFDIEVRVGAGAYICGEETSMM 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA+ GL+G PT +NNV + A VP IL  GA  Y+  G   +RGT
Sbjct: 277 ESIEGKRGLVRAKPPLPAHKGLFGKPTVINNVLTFAAVPFILAGGAQAYADCGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K   ++G+V +    E +  IT  EL+++  GG   G   + AV  GG      P   + 
Sbjct: 337 KPIQLAGNVKHGGLFEVAFGITLGELVDEVGGGTASGRP-VRAVQVGGPLGAYFPRA-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   V+V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPFDYEAFAARSGLVGHGGVVVFDDTVDMAKQARFAMQFCSIESCGKCTPCRIGSVRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++++++G    + I LL ++ + ++  ++CALG    +P+   +K+F    
Sbjct: 455 ETIDKIIEGDRSAQNIALLEDLCQTMKLGSLCALGGFVPFPVLSALKHFPEDF 507


>gi|171316163|ref|ZP_02905387.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MEX-5]
 gi|171098672|gb|EDT43467.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MEX-5]
          Length = 525

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 215/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQASA-TQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+ A+     +G LG       +  D+ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGERVLGSAHAFDLHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+  + GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+ +G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|330809409|ref|YP_004353871.1| formate dehydrogenase beta subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377517|gb|AEA68867.1| Formate dehydrogenase beta subunit [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 519

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/417 (38%), Positives = 226/417 (54%), Gaps = 10/417 (2%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+ Q  SL D  +RG +  + + ++     ++  V  SGLRGRGGA F
Sbjct: 98  LKSQQRLLFARAGITQPLSLDDYRARGGFLGLARSIQMDGADVVASVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +         Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 158 PAGIKWRTVRDAV-GAQKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGIAVGATM 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L  A+     +G LG+N S  G   DI V  GAGAYICGEETALL
Sbjct: 217 GYIYVRSEYPAAISTLNEALRIARDAGYLGANVSGSGRAFDIEVRVGAGAYICGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA +Y  FG   + GT
Sbjct: 277 ESLEGKRGTVRAKPPLPAIQGLFGLPTLVHNVVTLASVPIILEKGAQFYRDFGMGRSLGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  ++  EL+E + GG   G   L A   GG     +P  Q  
Sbjct: 337 MPFQLAGNVRQGGLVERAFGLSLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPAQ-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    MG+ LG   V+V D S D+ +       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPLDYEAFAAMGAMLGHGGVVVADDSLDMAQMARFALQFCAEESCGKCTPCRIGSTRGV 454

Query: 360 RVMERL----VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++RL      G  Q++ + LL ++   ++  ++CALG   ++P+   +K F    
Sbjct: 455 EVVDRLIASTEAGARQEQAL-LLQDLCDTLQYGSLCALGGMTSYPVASALKYFPADF 510


>gi|254441379|ref|ZP_05054872.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Octadecabacter antarcticus 307]
 gi|198251457|gb|EDY75772.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Octadecabacter antarcticus 307]
          Length = 505

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 146/416 (35%), Positives = 218/416 (52%), Gaps = 7/416 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  Q R+ F     +   SL D  + G    + + +      I+ EV  SGLRGRGGAGF
Sbjct: 90  MKGQTRLTFQRCGVIDPLSLPDYEAHGGLVGLRRAIAMTPADIVGEVTTSGLRGRGGAGF 149

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW+ +    +D   Y+V NADE + GT  DR IM  +P TLIEG +IA  A+ A  
Sbjct: 150 PTGIKWNTVLGAKAD-QKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMIIAGLAVEATK 208

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+    + +  AV     +GLLG++    G   D+ +  GAGAY+CGEET+LL
Sbjct: 209 GYVYLRSEYPDAIDIMDKAVVLARHAGLLGADVLGSGRSFDMEIRVGAGAYVCGEETSLL 268

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G  R KPP PA  G  G PT VNNV S+A VP ++ +GA  Y+ FG   ++GT
Sbjct: 269 NSLEGKRGVVRAKPPLPALEGFLGKPTVVNNVISLATVPVVMEKGAQHYADFGLGRSKGT 328

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V +    E +  +   +L++K  GG       + AV  GG     +P  +  
Sbjct: 329 IPIQIAGNVKFGGLYETAFGMPLGDLVDKVAGG-SLSGRPVKAVQVGGPLGAYMPRSK-F 386

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
                Y+     G  +G A ++V D S D++        F   ESCG+CTPCR G    +
Sbjct: 387 ETPFGYEEFDGQGGLIGHAGMVVFDDSIDMLGMARFAMEFCAVESCGKCTPCRIGAVRGV 446

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             ++R+  G      I+LL ++ + ++  ++CALG    +P+   + NF      +
Sbjct: 447 ETIDRI--GKGDTAAIELLEDLCETMKDGSLCALGGFTPFPVLSALHNFPDDFAAK 500


>gi|115350950|ref|YP_772789.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria AMMD]
 gi|115280938|gb|ABI86455.1| formate dehydrogenase beta subunit [Burkholderia ambifaria AMMD]
          Length = 525

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDVACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQASA-TQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+ A+     +G LG +     +  D+ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGEHVLGSAHAFDLHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+  + GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+ KG   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRKGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|193076538|gb|ABO11196.2| NADH dehydrogenase I chain F [Acinetobacter baumannii ATCC 17978]
          Length = 444

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/406 (39%), Positives = 230/406 (56%), Gaps = 14/406 (3%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            D  +   +    K L      ++  +KA+ ++GRGGAGF  G+KWS M       P YL
Sbjct: 33  DDYEALEGYAGFKKALGMKPAEVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYL 91

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           + NADE EPGT KDR +M   PH LIEG +IA + + A   +I++RGE+I   + L  A+
Sbjct: 92  ICNADEMEPGTFKDRLLMEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEAL 151

Query: 141 DECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++  A G LG N    G++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   
Sbjct: 152 EQIRAKGYLGDNILGSGWNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVA 211

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEES 257
           G +G PT VNNVE+   +P I+ RG  WY G   G+  + GTK++  SG V +P   E  
Sbjct: 212 GAWGRPTIVNNVETYNNLPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELP 271

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
              T  E+IE+H GG+R G   L A +PGG+S   LPA  +    MD + + + GS LGT
Sbjct: 272 FGTTAREVIEEHAGGMRDGLK-LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGT 329

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             ++V+D +  ++     L  F+  ESCG CTPCR+G  W ++ ++ L  G  +K +ID 
Sbjct: 330 CLLMVVDETQCMVSLTRNLEEFFARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDH 389

Query: 378 LYEVSKNIE-GRTICALGDAAAWPIQG----LIKNFRPLIEERIDQ 418
           L E+++ +  G+T CA      W         +K+FR   E ++  
Sbjct: 390 LQELTRKLWIGKTFCAHATRCEW---SRLWVALKHFRSEFEAKVTD 432


>gi|172059963|ref|YP_001807615.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MC40-6]
 gi|171992480|gb|ACB63399.1| NADH dehydrogenase (quinone) [Burkholderia ambifaria MC40-6]
          Length = 525

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLKHDGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQASA-TQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATL 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+ A+     +G LG +     +  D+ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIAALETAIVRAREAGWLGEHVLGSAHAFDLHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+  + GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDYGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+ +G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIREGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|90426117|ref|YP_534487.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
 gi|90108131|gb|ABD90168.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
          Length = 518

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 223/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +  +S+ D  + G ++ +++ L    + II++V  SGLRGRGGAGF
Sbjct: 98  LKRQTRLTFARCGVIDPRSVEDYRAHGGYEGLERALALTSEAIIDDVIKSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  +    Y+  NADE + GT  DR IM  +P+ +IEG  IA  A+GA  
Sbjct: 158 PTGIKWRTVAQAAA-AQKYICCNADEGDSGTFADRMIMEGDPYMVIEGMTIAGIAVGATR 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    E++ AA+     +G LG       +D DI V  GAGAYICGEETA+L
Sbjct: 217 GYIYIRSEYPHAVEAINAAIAGARRAGYLGPGIGRSRHDFDIEVRVGAGAYICGEETAML 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA+ GL+G PT +NNV S A +P IL  GA  Y+  G   +RGT
Sbjct: 277 ESIEGKRGVVRAKPPLPAHKGLFGQPTVINNVLSFAAIPFILAGGAQAYADCGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K   + G++ +    E +  IT  EL++   GG   G   + AV  GG      P   + 
Sbjct: 337 KPIQLGGNIKHGGLFEVAFGITLGELVDDIGGGTASGRP-VRAVQVGGPLGAYFPRE-LF 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G   V+V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 395 DTPFDYEAFAARSGLVGHGGVVVFDDTVDMAKQARFAMQFCAIESCGKCTPCRIGSQRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +++++ G    + I LL ++ + ++  ++CALG    +P+   + +F    
Sbjct: 455 ETIDKIINGDRAPQNIALLEDLCQTMKLGSLCALGGFVPYPVLSALTHFPEDF 507


>gi|209884427|ref|YP_002288284.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5]
 gi|209872623|gb|ACI92419.1| NADH dehydrogenase i chain f [Oligotropha carboxidovorans OM5]
          Length = 620

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 146/405 (36%), Positives = 223/405 (55%), Gaps = 9/405 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +   +  +  +S+ D ++   +  + +  E     +I EVK S L GRGGA F  G+KW 
Sbjct: 210 LLKRIGKVDPESIDDYLATDGYAGLRRAFEMEPAQVITEVKDSRLMGRGGAAFPAGIKWE 269

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
              K  +  P YLV NADESEPGT KDR I+  +P  LIE   IA +AIGA   +IY+RG
Sbjct: 270 STAKQPA-TPRYLVCNADESEPGTFKDRSILEGDPFALIESMTIAGYAIGAERGYIYLRG 328

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+ R    L  A+++    G LG N    G+  ++ +  GAGAYICGEETA+  S+EG +
Sbjct: 329 EYPRAYRMLSNAIEKARERGFLGENIQGKGWSFELEIRRGAGAYICGEETAIFNSIEGYR 388

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR KPPFP   GL+G PT VNNVE++  VP I++ G + Y+  G E + G KLF +SG
Sbjct: 389 GEPRTKPPFPFEAGLFGKPTVVNNVETLCNVPLIMQLGGAEYAKIGTEGSTGPKLFCVSG 448

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           ++  P   E     T  +++E   G        L AV+ GG++   + A ++    + ++
Sbjct: 449 NLVRPGVYEVPFGATLGDILELAGG--VPQGRKLQAVLLGGAAGVFVRADEL-DIPLTFE 505

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G++   + LG+  V+  D + D+   + R++ F++ ESCGQC PCR GT      + R++
Sbjct: 506 GVRAAKATLGSGVVLAFDDTVDLSGILLRIASFFRDESCGQCVPCRVGTVRQEEALLRIM 565

Query: 367 KGIAQKR----EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
                 +    +I +L +V   ++  +IC LG AA   ++  I  
Sbjct: 566 HNGHDAKAKGNDIHILRDVGLVMKDASICGLGQAAWNAVESAIDR 610


>gi|320105162|ref|YP_004180753.1| NADH dehydrogenase subunit F [Isosphaera pallida ATCC 43644]
 gi|319752444|gb|ADV64204.1| NADH dehydrogenase subunit F [Isosphaera pallida ATCC 43644]
          Length = 475

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 182/426 (42%), Positives = 259/426 (60%), Gaps = 10/426 (2%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAG 59
           M   +  +  N     G +L    +RG +    K L     D ++N VKAS LRGRGGAG
Sbjct: 1   MAQFEPVLTRNWNVENGHTLRVYEARGGYQAARKALTTMSPDDVVNLVKASELRGRGGAG 60

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KWSF+PK  ++    + VN DESEP T  +R ++  +PH  +EG +I+ FA  A 
Sbjct: 61  FPTGLKWSFLPKDRTE--TLMCVNGDESEPATFNNRLLIERDPHQFLEGILISCFATRAT 118

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A++Y+R E+I   + ++ A+ E  A+G LG N    G+D+ +++H GAGAYICGEET L
Sbjct: 119 TAYVYLRFEYIAGYKMMERAIAEAEAAGHLGRNIYGSGFDLKVVLHRGAGAYICGEETGL 178

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGK+G PR+KPPFPA  G +  PT VNNVE++  VP I+ RGA W+   G   + G
Sbjct: 179 IESLEGKRGWPRIKPPFPAVEGAFRKPTVVNNVETLCCVPHIVERGADWFKSIGTPKSYG 238

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
            KL+ +SGHVN    VE  + +T  +LIE+H GG+  G     A +PGG S+  L A   
Sbjct: 239 PKLYCVSGHVNKQVCVELPLGVTTRQLIEEHAGGVWKGRKA-KAAVPGGISMGLL-AESE 296

Query: 299 RGAIMDYDGLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +D++ L+  G  GLGTAAV V+D +  II  +   + F+ HESCGQCTPCREGT W
Sbjct: 297 FDVPLDFEALRPTGCLGLGTAAVTVLDETMPIIDYLAICARFFAHESCGQCTPCREGTNW 356

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNI---EGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           + + + R+  G  +  ++D+L ++S+N+    G TIC L D AAWP++  +  FR  +EE
Sbjct: 357 LNKTIHRIKNGGGRLEDLDILEQLSQNMGITPGTTICGLADGAAWPVKNALAKFRGELEE 416

Query: 415 RIDQYH 420
            I  + 
Sbjct: 417 YIRTHQ 422


>gi|317125324|ref|YP_004099436.1| formate dehydrogenase subunit beta [Intrasporangium calvum DSM
           43043]
 gi|315589412|gb|ADU48709.1| formate dehydrogenase beta subunit [Intrasporangium calvum DSM
           43043]
          Length = 509

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 154/416 (37%), Positives = 229/416 (55%), Gaps = 5/416 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +  +    ++     G W  + + L      ++ E+ ASGLRGRGGAGF
Sbjct: 95  LARQHRVSFARVGVIAPTDIAAYEEHGGWAGLRRALVMEPAEVVEELAASGLRGRGGAGF 154

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  +D   ++  N DE + GT  DR +   +P TLIEG ++A+ A+GA  
Sbjct: 155 PTGIKWRTVLQTSAD-LKFVCCNLDEGDSGTFADRMLAEGDPFTLIEGMLVAAHAVGARE 213

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY R E+     +L+ A+D  YA G LG          D+ V  GAGAYICGEET++L
Sbjct: 214 GYIYCRSEYPAAAATLRRAIDVAYAHGWLGDRIQGSDLSFDLFVRLGAGAYICGEETSML 273

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG++G+ R KPP PA  GL+G PT VNNV + A VP IL  G + Y+  G   +RGT
Sbjct: 274 ESLEGRRGEVRAKPPIPAIEGLFGRPTVVNNVLTFAAVPMILADGGAAYAALGSGRSRGT 333

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           ++F ++G+V     VE    I+  +L+E + GG   G   + AV  GG     LPA  + 
Sbjct: 334 QVFQLAGNVRQGGIVETDFGISLRDLVEDYGGGTVTGRP-VRAVQVGGPLGAYLPATDL- 391

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+ L E+G  LG   V+V D + D  +       F   ESCG+CTPCR G+   +
Sbjct: 392 DVPMDYEALLEVGGMLGHGGVVVWDDTFDAARMARFAMEFCAKESCGKCTPCRIGSQRGV 451

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
             ++R++ G  ++R + LL ++   +   ++CA+G     P+Q  I++F    + R
Sbjct: 452 ETIDRIIAGTERERNLLLLDDLCTTMTKGSLCAMGGLTPMPVQSAIRHFAEDFDRR 507


>gi|126453004|ref|YP_001067207.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1106a]
 gi|167846783|ref|ZP_02472291.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           B7210]
 gi|242317218|ref|ZP_04816234.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei 1106b]
 gi|126226646|gb|ABN90186.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei 1106a]
 gi|242140457|gb|EES26859.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei 1106b]
          Length = 527

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|217420419|ref|ZP_03451924.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia
           pseudomallei 576]
 gi|217395831|gb|EEC35848.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia
           pseudomallei 576]
          Length = 521

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/413 (34%), Positives = 215/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG S     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGTSVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|206561321|ref|YP_002232086.1| NAD-dependent formate dehydrogenase subunit beta [Burkholderia
           cenocepacia J2315]
 gi|198037363|emb|CAR53296.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           cenocepacia J2315]
          Length = 525

 Score =  422 bits (1084), Expect = e-116,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +  G    +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQARA-AQKYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG +     +  ++ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHVLGSAHAFELQVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+    GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLP-DHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|326402927|ref|YP_004283008.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum
           AIU301]
 gi|325049788|dbj|BAJ80126.1| NADH-quinone oxidoreductase subunit F [Acidiphilium multivorum
           AIU301]
          Length = 434

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 162/416 (38%), Positives = 237/416 (56%), Gaps = 7/416 (1%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72
           G Q   ++     G +  + K      + ++ EVK + +RGRGGAGF  G KW   P+  
Sbjct: 15  GRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAGFPAGRKWEGAPRGA 74

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            + R  YLV+NADE EPG+ KDR ++   PH +IEG +I +FA+ A  A+I+VRGE++  
Sbjct: 75  DAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQAETAYIFVRGEYVLA 134

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
            E L  AV E  A G LG++    G+ + I VH   G YICGE +AL  +LEGK+  PR 
Sbjct: 135 MERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEASALFSALEGKRAVPRT 194

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNRGTKLFSISGHVNY 250
           +PP     GL+G PT VNNVE++  VP+I+ RGA W+ G  R     GTKL+ +SG VN 
Sbjct: 195 RPPRSTTSGLWGKPTVVNNVETLCCVPSIIERGADWFLGLSRSATEGGTKLYGVSGRVNR 254

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E  +    +E+IE+H GG+R G++   AV+PGG+S   +         MD+D + +
Sbjct: 255 PGLWELPVGTPLNEIIEEHAGGMREGYEA-RAVLPGGASTAFIMREN-FDVPMDFDSVGK 312

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           +GS LGTA ++V+D+    +  +  +  F+  ESCG CTPCR+G  W+ R++  L  G  
Sbjct: 313 IGSWLGTANILVLDQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPWVERILTALEAGEG 372

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +  +I+LL      +  GRT C L   A  P++  +K FR   E  + + H C + 
Sbjct: 373 EPDDIELLAHHVDFLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHVSERH-CPWH 427


>gi|188584099|ref|YP_001927544.1| NADH dehydrogenase (quinone) [Methylobacterium populi BJ001]
 gi|179347597|gb|ACB83009.1| NADH dehydrogenase (quinone) [Methylobacterium populi BJ001]
          Length = 519

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 143/416 (34%), Positives = 219/416 (52%), Gaps = 5/416 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   S+ D  + G +  ++  L+   + ++ +V+ SGLRGRGGAG
Sbjct: 98  FLARQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEAALKLDAEGVVAQVRDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW+ +    SD   Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA 
Sbjct: 158 FPAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+ +  ++L+ A+     +G+LG N    G    + V  GAGAYICGEET+L
Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVKAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  G  G PT VNNV +   VP I+  GA  Y+ +G   + G
Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPWIMEHGAKAYAEYGMGRSLG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++ +   +E +  IT  ++I++  GG   G   + AV  GG      P   +
Sbjct: 337 TLPIQLAGNIKHGGLIEYAFGITIRQVIDEFGGGTASGRP-VRAVQVGGPLGAYFPDE-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ +      +G   ++V D + D+ K       F   ESCG+CTPCR G    
Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +  M++++ GI  +  + L+ ++ + +   ++CA+G     P+   I NF      
Sbjct: 455 VETMDKVISGIRPEANLKLVEDLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510


>gi|126439777|ref|YP_001059919.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 668]
 gi|126219270|gb|ABN82776.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia
           pseudomallei 668]
          Length = 521

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|90416713|ref|ZP_01224643.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90331466|gb|EAS46702.1| formate dehydrogenase, beta subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 515

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 145/414 (35%), Positives = 220/414 (53%), Gaps = 5/414 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
              Q R+  +  GL     L +  +   +  ++  L+     I+++VK SGLRGRGGA F
Sbjct: 91  FKSQQRLTYSRAGLGDPVCLDNYQALNGFKGLNNALKMTGQQIVDQVKDSGLRGRGGAAF 150

Query: 61  STGMKWSFMPKVCSD-RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
             G+KW  +     D    Y+V NADE + GT  DR +M  +P+ LIEG ++A  A+GA 
Sbjct: 151 PAGIKWQTVHDAGKDGCQKYIVCNADEGDSGTFADRLVMEADPYQLIEGMIVAGLAVGAT 210

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+R E+    + L  A+D   A+  LG N    G    + V  GAGAYICGEET+L
Sbjct: 211 QGYIYLRSEYPVAHKLLNIAIDRAIAANFLGENIQGSGKTFYLEVRLGAGAYICGEETSL 270

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT VNNV ++A + TIL +GA  Y  FG   +RG
Sbjct: 271 LESLEGKRGMVRAKPPLPAIEGLFGMPTVVNNVLTLAAISTILEQGADSYQNFGMGRSRG 330

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++     +E +  +T  E++E +  G       + A+  GG     LP  Q 
Sbjct: 331 TLAIQLAGNIKRGGLIELAFGVTLREVVEDYGQGT-YSGRPIRAIQVGGPLGAFLPESQ- 388

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDY+    + + +G   ++V D + D+         F   ESCG+CTPCR G+   
Sbjct: 389 WDTPMDYEAFAAIKAMIGHGGIVVFDDTADMAAQARFAMEFCVVESCGKCTPCRIGSVRG 448

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + V++R+V    +   + LL+E+   +E  ++CA+G    +P++  + +F    
Sbjct: 449 VEVIDRIVANENRDNNLILLHELCDTMEFGSLCAMGGMTPYPVRSALAHFPNDF 502


>gi|167563645|ref|ZP_02356561.1| formate dehydrogenase, beta subunit [Burkholderia oklahomensis
           EO147]
          Length = 522

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+     +L  A+     +G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GYVYVRSEYPHAIATLDDAIARARDAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + ++  G   ++++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIAKIRAGDTSEKQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|148260120|ref|YP_001234247.1| NADH dehydrogenase (quinone) [Acidiphilium cryptum JF-5]
 gi|146401801|gb|ABQ30328.1| NADH dehydrogenase subunit F [Acidiphilium cryptum JF-5]
          Length = 434

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 162/416 (38%), Positives = 237/416 (56%), Gaps = 7/416 (1%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK-V 72
           G Q   ++     G +  + K      + ++ EVK + +RGRGGAGF  G KW   P+  
Sbjct: 15  GRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAGFPAGRKWEGAPRGA 74

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            + R  YLV+NADE EPG+ KDR ++   PH +IEG +I +FA+ A  A+I+VRGE++  
Sbjct: 75  DAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQAETAYIFVRGEYVLA 134

Query: 133 RESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
            E L  AV E  A G LG++    G+ + I VH   G YICGE +AL  +LEGK+  PR 
Sbjct: 135 MERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEASALFSALEGKRAVPRT 194

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNRGTKLFSISGHVNY 250
           +PP     GL+G PT VNNVE++  VP+I+ RGA W+ G  R     GTKL+ +SG VN 
Sbjct: 195 RPPRSTTSGLWGKPTVVNNVETLCCVPSIIERGADWFLGLSRSATEGGTKLYGVSGRVNR 254

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E  +    +E+IE+H GG+R G++   AV+PGG+S   +         MD+D + +
Sbjct: 255 PGLWELPVGTPLNEIIEEHAGGMREGYEA-RAVLPGGASTAFIMREN-FDVPMDFDSVGK 312

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           +GS LGTA ++V+D+    +  +  +  F+  ESCG CTPCR+G  W+ R++  L  G  
Sbjct: 313 IGSWLGTANILVLDQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPWVERILTALEAGEG 372

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           +  +I+LL      +  GRT C L   A  P++  +K FR   E  + + H C + 
Sbjct: 373 EPDDIELLAHHVDFLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHVSERH-CPWH 427


>gi|170751378|ref|YP_001757638.1| NADH dehydrogenase (quinone) [Methylobacterium radiotolerans JCM
           2831]
 gi|170657900|gb|ACB26955.1| NADH dehydrogenase (quinone) [Methylobacterium radiotolerans JCM
           2831]
          Length = 519

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 144/415 (34%), Positives = 214/415 (51%), Gaps = 5/415 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F     +   S+ D  + G +  ++  L+     I+  V+ SGLRGRGGAGF
Sbjct: 99  LARQQRLTFHRCGVIDPVSVDDYRAHGGYRGLEAALKLDAAGIVAAVRESGLRGRGGAGF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW+ +    +D   Y+V NADE + GT  DR +M  +P  LIEG  IA  A GA  
Sbjct: 159 PAGIKWNTVMLAEAD-QKYVVCNADEGDSGTFADRMMMEGDPFNLIEGMTIAGVATGATR 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+ +   +L+ A+     +G+LG N    G    + V  GAGAYICGEET+LL
Sbjct: 218 GYIYLRSEYPQAFATLKEAIANGVTAGVLGDNILGSGKSFHLDVRLGAGAYICGEETSLL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  G  G PT VNNV +   VP IL  GA  Y+ +G   + GT
Sbjct: 278 ESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPWILENGARAYADYGMGRSLGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++ +   +E +  IT  ++IE   GG R G   + AV  GG      P   + 
Sbjct: 338 LPIQLAGNIKHGGLIEMAFGITLRQVIEDFGGGTRSGRP-VRAVQVGGPLGAYFP-DHLL 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+ +      +G   ++V D + D+         F   ESCG+CTPCR G    +
Sbjct: 396 DTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAAQARFAFEFCATESCGKCTPCRIGATRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
             M++++ GI     + L+ ++ + +   ++CA+G     P+   I +F      
Sbjct: 456 ETMDKVIAGIRPDANLKLVEDLCEVMTDGSLCAMGGLTPMPVMSAITHFPEDFRR 510


>gi|94309499|ref|YP_582709.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Cupriavidus metallidurans CH34]
 gi|93353351|gb|ABF07440.1| NAD-dependent formate dehydrogenase beta subunit [Cupriavidus
           metallidurans CH34]
          Length = 518

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 224/414 (54%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q+R+     G+    SL D ++   +  + + L      I+ EV  SGLRGRGGA 
Sbjct: 98  FLKKQERLTFMRVGITDPLSLDDYIAHEGFVGLTRALSMAPAEIVQEVVDSGLRGRGGAA 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    SD   Y+V NADE + GT  DR +M  +P  LIEG VIA  A+GA 
Sbjct: 158 FPTGIKWKTVLGARSD-VKYVVCNADEGDSGTFSDRMVMEDDPFMLIEGMVIAGLAVGAE 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+     + +AA++    +G LG +    G    + V  GAGAY+CGEETAL
Sbjct: 217 QGYIYTRSEYPHAIAATEAAIEIATRAGWLGDDIRGSGRCFQLEVRKGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL RGA +Y  FG   +RG
Sbjct: 277 LESLEGKRGVVRAKPPLPALEGLFGKPTVINNVISLATVPVILARGAKFYQDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE++  +T  EL+  + GG R G   + AV  GG     LP  + 
Sbjct: 337 TLPFQLAGNIRQGGLVEKAFGVTLRELMLDYGGGTRSG-RAIRAVQVGGPLGAYLPESR- 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+     G+ +G   ++V D + D+ K       F   ESCG+CTPCR G+   
Sbjct: 395 FDTPIDYEAYAAFGAVVGHGGIVVFDETVDMAKMARYAMEFCAIESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + VM+R++ G    + + L+ ++   +   ++CA+G    +P+   +  F    
Sbjct: 455 VEVMDRIIAGDQPVKHVALVRDLCDTMVNGSLCAMGSMTPYPVLSALDEFPEDF 508


>gi|302555320|ref|ZP_07307662.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472938|gb|EFL36031.1| NADH oxidoreductase (quinone), F subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 607

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/403 (39%), Positives = 222/403 (55%), Gaps = 10/403 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +   +  +   SL D  + G +  + +  E G   +I EV  SGL GRGGA F TG KW 
Sbjct: 207 LLRRVGVVDPASLDDYRAHGGYTALRRAFELGPAGVIREVTDSGLVGRGGAAFPTGRKWQ 266

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                  DRPH+LV NADESEPGT KDR +M  +P+ L+E   IA +A GAH  ++Y+RG
Sbjct: 267 ATA-SQPDRPHHLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAGYATGAHKGYLYLRG 325

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+ R    L+ AV +  A GLLG +    GY  DI +  GAGAYICGEETAL  S+EG +
Sbjct: 326 EYPRALRRLEHAVAQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYR 385

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR KPPFP   GL+G PT  NNVE++  V  IL  GA  Y+  G E + G KLF +SG
Sbjct: 386 GEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILTLGAPAYAAIGTERSTGPKLFCVSG 445

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E     T  +L+             L AV+ GG++   + A ++    + ++
Sbjct: 446 SVERPGVYEVPFGATLGDLLALAG-----VRQGLRAVLLGGAAGGFVRADEL-DVPLTFE 499

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G +E G+ LG+  V+  D S  + + + R++ F++ ESCGQC PCR GT      + R+V
Sbjct: 500 GTREAGTTLGSGVVMAFDDSVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIV 559

Query: 367 K--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           +  G     +I LL EV + +   +IC LG  A   ++  I  
Sbjct: 560 ERTGADAAGDIALLREVGRAMRDASICGLGQTAWNAVESAIDR 602


>gi|167903757|ref|ZP_02490962.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei NCTC
           13177]
 gi|254181073|ref|ZP_04887671.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1655]
 gi|184211612|gb|EDU08655.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           1655]
          Length = 521

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|114571227|ref|YP_757907.1| NADH dehydrogenase (quinone) [Maricaulis maris MCS10]
 gi|114341689|gb|ABI66969.1| formate dehydrogenase beta subunit [Maricaulis maris MCS10]
          Length = 511

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 153/412 (37%), Positives = 213/412 (51%), Gaps = 5/412 (1%)

Query: 2   LTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L DQ R IF          L+   + G    + +        I+  VK SGLRGRGGAGF
Sbjct: 98  LADQQRLIFARCGLDDPLDLAAYQAGGGLAGLSRARALAPGVIVEAVKTSGLRGRGGAGF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW    K   D   YL  NADE + GT  DR +M  +P TLIEG  IA+ AIGA  
Sbjct: 158 PAGIKWETAAKATVD-ATYLCCNADEGDSGTYADRLLMEGDPFTLIEGMCIAARAIGATR 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
             +Y+R E+     +L+AA+     +GL       G   DI V  GAGAYICGEE+++L 
Sbjct: 217 GLVYLRSEYPDAIRTLKAAIRIWREAGLF-QGLSDGDGFDIEVRTGAGAYICGEESSMLN 275

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+ R KPP PA  GL+G PT VNNV ++A VP IL  G   Y  FG   +RGT+
Sbjct: 276 SLEGKRGEVRAKPPIPAISGLFGQPTIVNNVLTLASVPWILEHGGEAYRDFGTGRSRGTQ 335

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            F ++G V     +E +  ++   LIE   GG R G   L AV  GG     L A     
Sbjct: 336 AFQLAGDVKQGALLELAFGVSLRTLIEDFGGGTRSGRP-LRAVQVGGPLGAYL-ADADLD 393

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDY+ L  +G+ LG   ++V + + D+ +       F   ESCG+CTPCR G      
Sbjct: 394 VAMDYEALAAIGAMLGHGGIVVFNDTVDMARQARFAMEFCAIESCGKCTPCRVGATRGRE 453

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +++++ G A    + L+ ++ + +   ++CA+G     P++  I+ F    
Sbjct: 454 TLDKIIAGEAVADNLALIEDLCELMTDGSLCAMGGLTPMPVRSAIQRFPEDF 505


>gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 620

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 142/420 (33%), Positives = 221/420 (52%), Gaps = 5/420 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q R +      +  + +   +S G + ++ + L    + +I+ V  +GLRGRGG G
Sbjct: 130 FYALQRRKVLERCGKVDPRDVDHYISLGGYASLARALSMSPEEVIDWVTRAGLRGRGGGG 189

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G KW+   +  S    +++ N DE +PG   DR +M  +PH+++EG +I + A+GA 
Sbjct: 190 FPAGQKWASC-RSASGPQKFVLANGDEGDPGAFMDRSLMEGDPHSILEGMIIGAHAVGAS 248

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             FIYVR E+    E+L  A+ E    GLLG          D+ +  G GA++CGE +AL
Sbjct: 249 KGFIYVRDEYPLAVENLAHAIREARRLGLLGRRILGSDLSFDVDICRGGGAFVCGESSAL 308

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG+ G+PR+K       GL+ CPT +NNVE+ A VP I+R G   Y   G +++ G
Sbjct: 309 MASIEGRPGEPRVKYIRSTERGLWECPTVLNNVETWANVPIIIREGVDGYRSLGTKDSPG 368

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+FS+ G V     VE  M  T  E+I +  GG+  G +   AV  GG S  CLP  ++
Sbjct: 369 TKVFSLVGKVRRSGLVEVPMGTTLREIIFEIGGGV-MGRNRFKAVQTGGPSGGCLPESKL 427

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D+D L   GS +G+  +IVMD  + ++        F + ESCG+C PCREG   M
Sbjct: 428 -DLPVDFDRLTREGSMMGSGGMIVMDHRSCMVDVARYFVKFLEGESCGKCAPCREGLKAM 486

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             ++E L     +  ++++L  +   +    +C LG  AA P+   +++F     E  DQ
Sbjct: 487 GEILEDLCSRRGRPGDVEMLLFMGNALTDTALCGLGQTAANPVLSTLRHFMEEYREHQDQ 546


>gi|53720139|ref|YP_109125.1| NAD-dependent formate dehydrogenase subunit beta [Burkholderia
           pseudomallei K96243]
 gi|53724803|ref|YP_102258.1| formate dehydrogenase subunit beta [Burkholderia mallei ATCC 23344]
 gi|67642932|ref|ZP_00441683.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei GB8 horse 4]
 gi|76809707|ref|YP_334389.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei 1710b]
 gi|121600156|ref|YP_993894.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1]
 gi|124385181|ref|YP_001026955.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC
           10229]
 gi|126450106|ref|YP_001079757.1| formate dehydrogenase, beta subunit [Burkholderia mallei NCTC
           10247]
 gi|166999708|ref|ZP_02265542.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei PRL-20]
 gi|167816880|ref|ZP_02448560.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 91]
 gi|226197836|ref|ZP_03793410.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|254176775|ref|ZP_04883432.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|254192290|ref|ZP_04898779.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254203943|ref|ZP_04910303.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH]
 gi|254208923|ref|ZP_04915271.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU]
 gi|254260630|ref|ZP_04951684.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei 1710a]
 gi|254295606|ref|ZP_04963064.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           406e]
 gi|254360022|ref|ZP_04976292.1| formate dehydrogenase, beta subunit [Burkholderia mallei
           2002721280]
 gi|52210553|emb|CAH36536.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei K96243]
 gi|52428226|gb|AAU48819.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           23344]
 gi|76579160|gb|ABA48635.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei 1710b]
 gi|121228966|gb|ABM51484.1| formate dehydrogenase, beta subunit [Burkholderia mallei SAVP1]
 gi|124293201|gb|ABN02470.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei NCTC 10229]
 gi|126242976|gb|ABO06069.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei NCTC 10247]
 gi|147745455|gb|EDK52535.1| formate dehydrogenase, beta subunit [Burkholderia mallei FMH]
 gi|147750799|gb|EDK57868.1| formate dehydrogenase, beta subunit [Burkholderia mallei JHU]
 gi|148029262|gb|EDK87167.1| formate dehydrogenase, beta subunit [Burkholderia mallei
           2002721280]
 gi|157805551|gb|EDO82721.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           406e]
 gi|157987485|gb|EDO95261.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160697816|gb|EDP87786.1| formate dehydrogenase, beta subunit [Burkholderia mallei ATCC
           10399]
 gi|225930024|gb|EEH26037.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|238524152|gb|EEP87587.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei GB8 horse 4]
 gi|243064206|gb|EES46392.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           mallei PRL-20]
 gi|254219319|gb|EET08703.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           pseudomallei 1710a]
          Length = 521

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 143/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP GQ  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPEGQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|225849102|ref|YP_002729266.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit
           f) (ndh-1 subunit f) (Nuo6) [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643363|gb|ACN98413.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit
           f) (ndh-1 subunit f) (Nuo6) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 429

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/406 (40%), Positives = 229/406 (56%), Gaps = 16/406 (3%)

Query: 20  LSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           + +  + G +  + K L K   + I+  V+ S LRGRGGAGF TG KW F        P 
Sbjct: 31  IEEYETTGGYSALKKALTKLTPEDIVIMVEESTLRGRGGAGFPTGRKWRFALANPK--PR 88

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADESEPGT KDR I+  +PH LIEG +I+++A+GA   FIY+RGE+      L+ 
Sbjct: 89  YLICNADESEPGTFKDRIIIERDPHLLIEGMIISAYALGAELGFIYIRGEYPAGYMILED 148

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E    G LG N     +  DI+V+ GAGAYICGEETAL+ESLEGK+G PRL+PP+PA
Sbjct: 149 AIEEARKKGYLGKNILGTDFSFDILVYRGAGAYICGEETALIESLEGKRGHPRLRPPYPA 208

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           N GL+G PT VNNVE+++ +P I+    S+Y   G     G KLF ISG V  P   E +
Sbjct: 209 NEGLFGRPTVVNNVETLSNIPIIVTY-ESYYMSIGPAGYYGPKLFPISGKVKNPGVYEST 267

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M IT  ELI+   G          AV  G   V    + +     MDY          GT
Sbjct: 268 MDITLRELIDMAGGM--KDGKKFKAVFAGALGVY---SERDLDTPMDYSP----KGFGGT 318

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
              IV+     II A+  +  F+ HESCG+CTPCR GT  ++ ++++  +G A +++I  
Sbjct: 319 GTTIVLAEDDCIIDALIVIGEFFHHESCGKCTPCRVGTYELLNILKKFQEGTATEKDIKY 378

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           L  + +NI   +IC LG +A   ++  +K FR      I+   +C 
Sbjct: 379 LEHLCENIPVGSICGLGYSAPNAVRDALKKFRDEFYLHIE--KKCP 422


>gi|218532745|ref|YP_002423561.1| NADH dehydrogenase (quinone) [Methylobacterium chloromethanicum
           CM4]
 gi|218525048|gb|ACK85633.1| NADH dehydrogenase (quinone) [Methylobacterium chloromethanicum
           CM4]
          Length = 519

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 147/416 (35%), Positives = 219/416 (52%), Gaps = 5/416 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   S+ D  + G +  ++  L+ G + I+ +V+ SGLRGRGGAG
Sbjct: 98  FLAKQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEAALKLGAEGIVAQVRDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW+ +    SD   Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA 
Sbjct: 158 FPAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+ +  ++L+ A+     +G+LG N    G    + V  GAGAYICGEET+L
Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  G  G PT VNNV +   VP IL+ GA  Y+ +G   + G
Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPYILQHGAKSYAEYGMGRSLG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++     +E +  IT  ++IE   GG   G   + AV  GG      P   +
Sbjct: 337 TLPIQLAGNIRQGGLIEYAFGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFPDD-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ +      +G   ++V D + D+ K       F   ESCG+CTPCR G    
Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +  M++++ GI  +  + L+ ++ + +   ++CA+G     P+   I NF      
Sbjct: 455 VETMDKVISGIRPEANLKLVEDLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510


>gi|239815993|ref|YP_002944903.1| NADH dehydrogenase (quinone) [Variovorax paradoxus S110]
 gi|239802570|gb|ACS19637.1| NADH dehydrogenase (quinone) [Variovorax paradoxus S110]
          Length = 519

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 219/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      S++D  +   +  + + L      I+ +V  SGLRGRGGA F
Sbjct: 100 LKKQERLTFARMGVTDPVSVADYEAHEGFAGLRRALTLAPAEIVQQVLDSGLRGRGGAAF 159

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR  M  +P  L+EG  IA  A GA  
Sbjct: 160 PAGIKWKTVLAAEAP-QKYIVCNADEGDSGTFSDRMTMEGDPLMLVEGMAIAGIATGATE 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L  A+     +G LG +    G+   + V   AGAY+CGEETALL
Sbjct: 219 GYIYVRSEYPHAIATLNEAIRHAEQAGFLGDDILGSGHAFRLTVRKAAGAYVCGEETALL 278

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEG++G  R KPP PA  GL+G PT +NNV ++A VP IL RGA +Y  +G   +RGT
Sbjct: 279 ESLEGRRGIVRAKPPLPALQGLFGQPTVINNVITLASVPLILARGADFYKHYGMGRSRGT 338

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE++  ++  EL+    GG   G   + AV  GG     +P  Q  
Sbjct: 339 LPFQLAGNIRHGGLVEKAFGLSLRELLYDFGGGSASGRP-IKAVQVGGPLGAYVPESQ-W 396

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   ++V D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 397 DLPLDYEAYAAVGAVVGHGGIVVHDDTADMSQLARYAMEFCAIESCGKCTPCRIGSTRGV 456

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++++     + +++ LL ++   +   ++CA+G    +P+   I ++    
Sbjct: 457 EVIDKITSNQNRPQQVILLRDLCDTMLHGSLCAMGGMTPYPVLSAINHYPEDF 509


>gi|39998530|ref|NP_954481.1| NADH dehydrogenase I subunit F [Geobacter sulfurreducens PCA]
 gi|39985477|gb|AAR36831.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens PCA]
          Length = 423

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/409 (40%), Positives = 237/409 (57%), Gaps = 8/409 (1%)

Query: 19  SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + ++  + G +  ++K L     + +   V  + LRGRGGAGF TG KWSF+P+     P
Sbjct: 16  TFAEYRAEGGFAALEKALSGMSPNDVQQVVIDANLRGRGGAGFPTGKKWSFVPRDIPG-P 74

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ N DE EPGT KDR ++   P++L+EG  +A++AIG   AFI++R  +    E+ +
Sbjct: 75  RYLICNCDEMEPGTYKDRILLEANPYSLVEGMTLAAYAIGVAHAFIFIRRGYEEAAENCR 134

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ E   +GLLG N    G+ +D+ VH  AG YICGEETAL+ +LEG++  PR KPPFP
Sbjct: 135 RAIAEAKEAGLLGKNILGSGFSLDLDVHQSAGRYICGEETALMNALEGRRANPRSKPPFP 194

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255
           A  GL+G PT VNNVE++A +P I+  GA+W+ G  R     GTKLF +SGHVN     E
Sbjct: 195 AVKGLWGRPTVVNNVETLANIPAIVANGAAWFKGLARISEAAGTKLFCVSGHVNNAACFE 254

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + ++  E+I+  CGG+  G +   A IPGG+S P           MD+D +   GS L
Sbjct: 255 LPLGMSLGEIIDGPCGGMLPGRE-FKACIPGGASTPFFTREH-WNVPMDFDAVARAGSRL 312

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  ++V DR+T ++ A   L  FY  ESCG CTPCREG  ++  V+ R+  G  ++  I
Sbjct: 313 GTGGIVVFDRNTCMVAATLNLVSFYARESCGWCTPCREGLPFVKDVLARIEAGAGREEHI 372

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            +L E  + +     C L   A  P++GL++ F   I E I    RC  
Sbjct: 373 AILREHVQYL-NYAFCPLAPGAMGPVEGLLRLFEDEIREHIV-MGRCPL 419


>gi|307730640|ref|YP_003907864.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1003]
 gi|307585175|gb|ADN58573.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1003]
          Length = 521

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 222/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L+   D     +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 158 PAGIKWRTVRAAKAP-QKYVVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATA 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+ +  A+G LG +     +  ++ V  GAG+Y+CGEETALL
Sbjct: 217 GYIYVRSEYPHSMATLEAAIAKARAAGWLGDSVLGSAHRFELFVAKGAGSYVCGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA VGLYG PT +NNV ++A VP I  RGA++Y  FG   +RGT
Sbjct: 277 ESLEGKRGIVRAKPPVPALVGLYGQPTVINNVITLATVPIIFARGAAYYKDFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+  + GG   G     AV  GG     LP  Q  
Sbjct: 337 LPFQLAGNVKQGGLVELAFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+    +G+ +G   ++V D ++++         F   ESCG+CTPCR G+   +
Sbjct: 395 DIPMDYEAYAAVGAVVGHGGLVVHDDTSNLADLAQYAMHFCALESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+ R+  G    R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 455 EVIARIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPYPVLSALDHFPEDF 507


>gi|167570807|ref|ZP_02363681.1| formate dehydrogenase, beta subunit [Burkholderia oklahomensis
           C6786]
          Length = 522

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 139/413 (33%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPMSIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGVATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+     +L  A+     +G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GYVYVRSEYPHAIATLDDAIARARDAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + ++  G   ++++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIAKIRAGDTSEKQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|114765413|ref|ZP_01444528.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Pelagibaca bermudensis HTCC2601]
 gi|114542256|gb|EAU45286.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Roseovarius sp. HTCC2601]
          Length = 506

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 148/413 (35%), Positives = 215/413 (52%), Gaps = 7/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  Q R+ F         SL    + G    + + +    + II+EVK SGLRGRGGAGF
Sbjct: 91  MKRQTRLTFARCGLTDPLSLEQYEAHGGLAGLRRAIGMTAEAIIDEVKLSGLRGRGGAGF 150

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA     A  
Sbjct: 151 PTGIKWDTVRMAHAD-RKYIVCNADEGDSGTFADRMIMEGDPFCLIEGMAIAGLGCHAEK 209

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            F+Y+R E+      L  A++   A+G+LG++    G+  D+ V  GAGAY+CGEET+LL
Sbjct: 210 GFVYLRSEYPDAIAVLSRAIEIARAAGVLGADVLGSGHAFDMEVRVGAGAYVCGEETSLL 269

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G  R KPP PA  G +G PT VNNV S+A VP I  +GA  Y+ FG   ++GT
Sbjct: 270 NSLEGKRGVVRAKPPLPALEGAFGKPTVVNNVISLATVPVIFEKGAEHYANFGLGRSKGT 329

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V +    E +  ++  +++E   GG   G   + AV  GG     L   Q  
Sbjct: 330 IPLQIAGNVRHGGLFETAFGMSLGQIVEDLGGGTASG-RAVKAVQVGGPLGAYLSPDQ-F 387

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
                Y+     G+ +G A ++V D S D++        F   ESCG+CTPCR G    +
Sbjct: 388 DTPFGYEEFDGQGALIGHAGLVVFDDSADMLGMARFAMEFCAVESCGKCTPCRIGAVRGV 447

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++R+  G      I LL ++ + ++  ++CALG    +P+   ++ F    
Sbjct: 448 ETLDRIAAG--DAEAIPLLIDLCETMQDGSLCALGGFTPYPVMSALRLFPEEF 498


>gi|107022110|ref|YP_620437.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia AU 1054]
 gi|116689055|ref|YP_834678.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia HI2424]
 gi|105892299|gb|ABF75464.1| formate dehydrogenase beta subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647144|gb|ABK07785.1| formate dehydrogenase beta subunit [Burkholderia cenocepacia
           HI2424]
          Length = 525

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +  G    +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQARA-AQKYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG +     +  ++ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ Y   VE +  +T  EL+    GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLP-DHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRHGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|134277692|ref|ZP_01764407.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305]
 gi|134251342|gb|EBA51421.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 305]
          Length = 521

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 143/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F +SG+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLSGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|254252942|ref|ZP_04946260.1| NADH dehydrogenase [Burkholderia dolosa AUO158]
 gi|124895551|gb|EAY69431.1| NADH dehydrogenase [Burkholderia dolosa AUO158]
          Length = 524

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 215/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLKYDGLAGLKNALALDGDAACEALIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    + +  Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRHATA-KQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA++    +G LG       +  ++ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIERAREAGWLGERVLGSAHAFELHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+    GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTATGRPA-RAAQVGGPLGTYLP-EHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    + + +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYAAIDAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+ +G   +R+I LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRQGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|27904650|ref|NP_777776.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372475|sp|Q89AU2|NUOF_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit F; AltName:
           Full=NADH dehydrogenase I subunit F; AltName: Full=NDH-1
           subunit F
 gi|27904047|gb|AAO26881.1| NADH dehydrogenase I chain F [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 444

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/399 (38%), Positives = 232/399 (58%), Gaps = 7/399 (1%)

Query: 20  LSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--KVCSDR 76
           + +   +  +   +K++     + +I+ +K SGL+GRGGAGF TG+KWS MP        
Sbjct: 27  IKEYKRKNGYRAFEKVVNHMTSEDVIDLIKQSGLKGRGGAGFLTGLKWSLMPPLNDEYGY 86

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YL+ NADE EPGT KDR +M   PH L+EG +I++FA+    ++I++RGE++     L
Sbjct: 87  TRYLLCNADEMEPGTYKDRFLMEKVPHQLLEGILISAFALSVTKSYIFLRGEYVNTERIL 146

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + ++ E    G LG N        +I +H GAG YICGEETAL+ SLEG++  PR KPPF
Sbjct: 147 KQSIIEATNYGYLGKNVCGSNLTFEIFIHTGAGRYICGEETALINSLEGRRANPRFKPPF 206

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA VGL+G PT VNNVE+++ VP I   G  WY G  +  + GTK+   SG V +P   E
Sbjct: 207 PAYVGLWGKPTCVNNVETLSNVPAIFLNGVKWYKGLSKSLDTGTKMMGFSGSVKFPGIWE 266

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               IT  E+ E++ GG++     L    PGG+S   L    +    MD+  +K++GS L
Sbjct: 267 LPFGITAREIFERYAGGMKNN-KKLKVWQPGGASTSFLIDKHL-DVPMDFVNIKKVGSRL 324

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GTA  + +D S  I+  +  +  F+  ESCG CTPCR+G  W++++++ L + I    +I
Sbjct: 325 GTALAMAVDDSVSIVSLVRNIEEFFSRESCGFCTPCRDGLPWIVKILKVLEQKIGVPEDI 384

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
           ++L ++ + +  GRT CA    A  P++  +K FR   E
Sbjct: 385 EILEQLCEQLGPGRTFCAHAPGAIEPLKSALKYFRLEFE 423


>gi|303246231|ref|ZP_07332511.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492294|gb|EFL52166.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 632

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/430 (33%), Positives = 230/430 (53%), Gaps = 11/430 (2%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q R +      +    + + ++ G +D   K   E     + + + ASGLRGRGG 
Sbjct: 140 FYQRQSRYVLKECGFIDPDEIREYVAHGGYDAARKAFTEMDGKAVCDVISASGLRGRGGG 199

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    ++  +   Y++ N DE +PG   DR +M   PH +IEG +IA+  IGA
Sbjct: 200 GFPTGRKWE-AARIQDNPKKYVICNGDEGDPGAFMDRSVMEGNPHCIIEGMMIAARGIGA 258

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + ++ AV E  A+G LG +    G    + V  GAGA++CGEETA
Sbjct: 259 DEGYIYVRAEYPLAVKRMRHAVAEAEAAGYLGDDVFGSGQSFRLEVMEGAGAFVCGEETA 318

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G P  KPPFPA  GL+  PT +NNVE++A VP I+ +GA  Y   G E + 
Sbjct: 319 LMASIEGRRGMPAPKPPFPAQKGLWRKPTIINNVETLAQVPRIIGKGAEAYRSLGTEKSP 378

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN-----LLAVIPGGSSVPC 292
           GTK F+++GHV     +E     T  E++    GG+     N       AV  GG S  C
Sbjct: 379 GTKTFALTGHVCNTGLIEVPFGATLREVVINIGGGVTDDRGNIDKTGFKAVQIGGPSGGC 438

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
                +    +D+D L+ +G+ +G+  ++VM++ T ++        F + ESCG+C  CR
Sbjct: 439 -LTPDLLDLPLDFDSLRSVGAMVGSGGLVVMNQKTCMVSVARFFMEFTQRESCGKCVLCR 497

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           EGT  ++ +++ +++G      ++LL  +   ++  ++C LG  A  P+   +K+FR   
Sbjct: 498 EGTKQLLALLDDVIEGRGTAETLELLETLGHAVQIGSLCGLGKTAPNPVLSTLKHFRKEY 557

Query: 413 EERIDQYHRC 422
           EE + +  RC
Sbjct: 558 EEHVFE-KRC 566


>gi|167895370|ref|ZP_02482772.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           7894]
 gi|167919995|ref|ZP_02507086.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           BCC215]
          Length = 521

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|253698812|ref|YP_003020001.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
 gi|251773662|gb|ACT16243.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
          Length = 421

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/408 (39%), Positives = 237/408 (58%), Gaps = 8/408 (1%)

Query: 21  SDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
            +  + G ++ + + +       +   V  SGLRGRGGAGF TG KWSF+P+     P +
Sbjct: 18  KEYRAEGGFEALKRAITGMTPAEVQQTVIDSGLRGRGGAGFPTGKKWSFVPRDLPG-PRW 76

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           ++ N DE EPGT KDR ++ H P++LIEG  +A +A+G    FI++R  + +  E+L  A
Sbjct: 77  IICNCDEMEPGTYKDRVLLEHNPYSLIEGMTLACYALGVRHGFIFIRKGYEQAAENLARA 136

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           + E    G LG       + +DI +H  AG YICGEETAL+ +LEGK+  PR KPPFPA 
Sbjct: 137 IAEAKKEGFLGERILGSEHSIDIDLHLSAGRYICGEETALINALEGKRPNPRQKPPFPAV 196

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNRGTKLFSISGHVNYPCTVEES 257
            GL+G PT VNNVE++A +P I+ RGA+W+ G        G+KLF +SG V     VE  
Sbjct: 197 KGLWGGPTVVNNVETLANIPGIVARGAAWFKGLAINPEGAGSKLFCVSGSVKDRACVELP 256

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           + I   ++I+  CGG+R G     A IPGG+S   L A  +    MDYD + + GS LG+
Sbjct: 257 IGIPLADIIDGPCGGMRLG-KKFKACIPGGASTQFLTAEHL-KVPMDYDPVAKAGSRLGS 314

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             +IV D S  +++A   L  F+  ESCG CTPCREG  ++  ++ R+  G  ++ +I +
Sbjct: 315 GGIIVFDESHCLVEATLNLITFFARESCGWCTPCREGLPYVKEILTRIETGYGKEDDIAI 374

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           L E  + +   + CAL   A  P++GL+++F   + E I +  +C  +
Sbjct: 375 LREHIRYL-NYSFCALAPGAMAPLEGLLRHFEDEVREHIVK-KKCPLK 420


>gi|254195650|ref|ZP_04902077.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13]
 gi|169652396|gb|EDS85089.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei S13]
          Length = 521

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLTNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|290956204|ref|YP_003487386.1| respiratory chain oxidoreductase [Streptomyces scabiei 87.22]
 gi|260645730|emb|CBG68821.1| putative respiratory chain oxidoreductase [Streptomyces scabiei
           87.22]
          Length = 610

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 154/403 (38%), Positives = 221/403 (54%), Gaps = 10/403 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           + + +  +   SL D  + G +  + +    G   +I EV  SGL GRGGA F TG KW 
Sbjct: 210 LLSRVGVVDPSSLDDYRAHGGYAALRRAFALGPAGVIREVTDSGLVGRGGAAFPTGRKWQ 269

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                  D+PHYLV NADESEPGT KDR ++  +P +L+E   IA +A GAH  ++Y+RG
Sbjct: 270 ATA-SQPDQPHYLVCNADESEPGTFKDRVLLEGDPFSLVEAMTIAGYATGAHRGYLYLRG 328

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+ R    L+ A+ +  A GLLG +    GY  DI +  GAGAYICGEETAL  S+EG +
Sbjct: 329 EYPRALRRLENAIAQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYR 388

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR KPPFP   GL+G PT  NNVE++  V  IL  GA  Y+  G   + G KLF +SG
Sbjct: 389 GEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILALGAPAYASIGTARSTGPKLFCVSG 448

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V+ P   E        +L+           D L AV+ GG++   +   ++    + ++
Sbjct: 449 SVDRPGIYELPFGAALGDLLTLAG-----VRDRLRAVLLGGAAGGFVRPDEL-DIPLTFE 502

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G +E G+ LG+  V+  D +  + + + R++ F++ ESCGQC PCR GT      + R+ 
Sbjct: 503 GTREAGTTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIA 562

Query: 367 K--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           +  G A   +I LL EV + +   +IC LG  A   ++  I  
Sbjct: 563 ERTGAAAAGDIALLREVGRAMRDASICGLGQTAWNAVESAIDR 605


>gi|170732343|ref|YP_001764290.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia MC0-3]
 gi|254246011|ref|ZP_04939332.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia PC184]
 gi|124870787|gb|EAY62503.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia PC184]
 gi|169815585|gb|ACA90168.1| NADH dehydrogenase (quinone) [Burkholderia cenocepacia MC0-3]
          Length = 525

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +  G    +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLQHGGLAGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQARA-AQKYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG +     +  ++ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+    GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLP-DHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIVRIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|298507474|gb|ADI86197.1| NADH dehydrogenase I, F subunit [Geobacter sulfurreducens KN400]
          Length = 423

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/409 (40%), Positives = 237/409 (57%), Gaps = 8/409 (1%)

Query: 19  SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + ++  + G +  ++K L     + +   V  + LRGRGGAGF TG KWSF+P+     P
Sbjct: 16  TFAEYRAEGGFAALEKALSGMSPNDVQQVVIDANLRGRGGAGFPTGKKWSFVPRDIPG-P 74

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ N DE EPGT KDR ++   P++L+EG  +A++AIG   AFI++R  +    E+ +
Sbjct: 75  RYLICNCDEMEPGTYKDRILLEANPYSLVEGMTLAAYAIGVAHAFIFIRRGYEEAAENCR 134

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ E   +GLLG N    G+ +D+ VH  AG YICGEETAL+ +LEG++  PR KPPFP
Sbjct: 135 RAIAEAKEAGLLGKNILGSGFSLDLDVHQSAGRYICGEETALMNALEGRRANPRSKPPFP 194

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255
           A  GL+G PT VNNVE++A +P I+  GA+W+ G  R     GTKLF +SGHVN     E
Sbjct: 195 AVKGLWGRPTVVNNVETLANIPAIVANGATWFKGLARISEAAGTKLFCVSGHVNNAACFE 254

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + ++  E+I+  CGG+  G +   A IPGG+S P           MD+D +   GS L
Sbjct: 255 LPLGMSLGEIIDGPCGGMLPGRE-FKACIPGGASTPFFTREH-WNVPMDFDAVARAGSRL 312

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  ++V DR+T ++ A   L  FY  ESCG CTPCREG  ++  V+ R+  G  ++  I
Sbjct: 313 GTGGIVVFDRNTCMVAATLNLVSFYARESCGWCTPCREGLPFVKDVLARIEAGAGREEHI 372

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            +L E  + +     C L   A  P++GL++ F   I E I   H C  
Sbjct: 373 AILREHVQYL-NYAFCPLAPGAMGPVEGLLRLFEDEIREHIVMGH-CPL 419


>gi|322417695|ref|YP_004196918.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320124082|gb|ADW11642.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 420

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/410 (40%), Positives = 236/410 (57%), Gaps = 8/410 (1%)

Query: 19  SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +  +    G ++ + K +       +   V  SGLRGRGGAGF TG KWSF+P+     P
Sbjct: 16  TFDEYREEGGFEALKKAISGMTPAEVQQTVIDSGLRGRGGAGFPTGKKWSFVPRDLPG-P 74

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            +L+ N DE EPGT KDR ++ H P++LIEG  +AS+A+G   AFI++R  + +  E+L 
Sbjct: 75  RWLICNCDEMEPGTYKDRVLLEHNPYSLIEGMTLASYALGVRHAFIFIRKGYEKAAENLA 134

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
             + E   SGLLG       + +D+ +H  AG YICGEETAL+ +LEGK+  PR KPPFP
Sbjct: 135 RGIAEAKKSGLLGERILGTEHSIDLDLHLSAGRYICGEETALINALEGKRPNPRQKPPFP 194

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNRGTKLFSISGHVNYPCTVE 255
           A  GL+  PT VNNVE++A +P+I+  GA+W+ G        GTKLF +SG V     VE
Sbjct: 195 AVKGLWQGPTVVNNVETLANIPSIIANGAAWFKGLALTPEGAGTKLFCVSGSVQNRVCVE 254

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +  T  E+IE  CGG+R       A IPGG+S   L   QM    MDYD + + GS L
Sbjct: 255 LPIGTTLGEIIEGSCGGMR-DGKKFKACIPGGASTQFLTPDQM-KVPMDYDSVAKAGSRL 312

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  +IV D    +++A   L  F+  ESCG CTPCREG  ++  ++ R+  G  ++ +I
Sbjct: 313 GSGGIIVFDEGHCLVEATLNLITFFARESCGWCTPCREGLPYVQEILTRIENGRGEEEDI 372

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            +L E  K +   T CAL   A  P+ GL+++F   + E I +  +C  +
Sbjct: 373 GILREHVKYL-NYTFCALAPGAMAPLDGLLRDFEDEVREHIVK-KKCPLK 420


>gi|163782978|ref|ZP_02177973.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881658|gb|EDP75167.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1]
          Length = 425

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 160/399 (40%), Positives = 230/399 (57%), Gaps = 11/399 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
            S+ + +  G +  ++K L    + II+ V+ S LRGRGGAGF TG KW F  +  +  P
Sbjct: 29  HSIEEYLKEGGYQALEKALNMSPEEIIDWVEKSTLRGRGGAGFPTGTKWKFAVQNPA--P 86

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y + NADESEPGT KDR ++  +PH L+EG +I+S+A+GA+ AFIY+RGE+      L 
Sbjct: 87  RYFICNADESEPGTFKDRILIERDPHLLLEGMIISSYAVGANEAFIYIRGEYPAGYYILL 146

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E    G LG +    G+D++I V  G GAYICGEETAL+ESLEGK+G PRLKPP+P
Sbjct: 147 DAIEEAKEKGFLGKDILGSGFDLEIYVARGGGAYICGEETALIESLEGKRGHPRLKPPYP 206

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
             VGL+G PT VNNVE+I  VP I+  G   Y   G  +  G KLF +SG V  P   E 
Sbjct: 207 VQVGLFGRPTVVNNVETICNVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYEL 266

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M+ T  E+I K+ GG  G             ++ C    ++    MDY          G
Sbjct: 267 PMNTTLREVIYKYAGGTVGNKKVKAVFS---GALDCFAGEEL-DMPMDYSPF----GFGG 318

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T  V+V+    DI++A  +++ FY+HE+CGQCTPCR G      +++R+ +G A +++ +
Sbjct: 319 TGTVMVLTEDDDIVEACLQVAKFYEHETCGQCTPCRVGCHEQAVLLDRIYRGEASEKDWE 378

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
               +++ I+  +IC LG  A   I+  ++ F    E  
Sbjct: 379 GFVFINRYIQPTSICGLGAVAGRLIKQAMEKFPEEFEAY 417


>gi|237813331|ref|YP_002897782.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei MSHR346]
 gi|237505526|gb|ACQ97844.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           pseudomallei MSHR346]
          Length = 521

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKHQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPESQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|123500998|ref|XP_001327980.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family protein
           [Trichomonas vaginalis G3]
 gi|121910917|gb|EAY15757.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family protein
           [Trichomonas vaginalis G3]
          Length = 425

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 188/415 (45%), Positives = 274/415 (66%), Gaps = 2/415 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML  +DRIFTN+ G+    L   M RG W++  KI+  G+ +I++EV+ S LRGR GAG 
Sbjct: 10  MLNKRDRIFTNINGVDESDLQSCMKRGDWNDTQKIIANGKKYILDEVRKSELRGRSGAGL 69

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T  KW  +       PHYL +N +ESEPGTCKDR I+++EP  +IEG  +AS+A+  H 
Sbjct: 70  LTYKKWEEILTSKQ-LPHYLCINGNESEPGTCKDRQILQNEPQKIIEGAFLASYALDVHR 128

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            ++YVRG + +E + LQ A+DE   + L+G N+K G+D +I VH GAGAY+CGE+T L+ 
Sbjct: 129 CYVYVRGHYTKEAKRLQLAIDEAKKANLIGKNNKFGWDFEINVHPGAGAYVCGEQTGLMT 188

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG  G PR KPP P   GL+ CPT V+NVE+I+ + +I RRG  W+S  G   +RG K
Sbjct: 189 SLEGNPGTPRQKPPQPFEKGLFQCPTVVDNVETISTISSICRRGGKWFSSLGIPGSRGPK 248

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           ++ ISGHVN PC VEE++ ++  ELI+ H  G+RGGWDNL  +IPGG+S P +   Q + 
Sbjct: 249 IYQISGHVNRPCIVEETLGMSLKELIDVHGSGVRGGWDNLQCIIPGGTSCPPITKEQAKN 308

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           AI+ +D + ++GSGLGT +++V+D + DI++   R++ FYK E CGQC  C EGT  M  
Sbjct: 309 AILGFDEMSKIGSGLGTGSLVVIDNTADIVEVYRRIANFYKDECCGQCKQCVEGTETMAE 368

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           + +++ +G   K ++  L EV+  ++ + IC+    A+ PI+G +K F+  + ER
Sbjct: 369 IFDKIARGKGTKDDVKHLEEVAFGMK-KYICSFSVGASDPIRGFLKVFKNKLLER 422


>gi|167581037|ref|ZP_02373911.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           TXDOH]
          Length = 522

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 215/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLKNALALDGATACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRDAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPVPALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++         F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + ++  G   ++++ LL E+   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIAKIRAGDTSEKQVRLLRELCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|167739672|ref|ZP_02412446.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 14]
          Length = 521

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 143/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLTNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+  PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFAKPTVINNVITLATVPIIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP GQ  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPEGQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|28207554|gb|AAO32145.1| NAD-linked formate dehydrogenase beta subunit [Methylobacterium
           extorquens AM1]
          Length = 519

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/416 (34%), Positives = 215/416 (51%), Gaps = 5/416 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   S+ D  + G +  ++  L+     I+ +V+ SGLRGRGGAG
Sbjct: 98  FLAKQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEAALKLDAKGIVAQVRDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW+ +    SD   Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA 
Sbjct: 158 FPAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+ +  ++L+ A+     +G+LG N    G    + V  GAGAYICGEET+L
Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  G  G PT VNNV +   VP IL  GA  Y+ +G   + G
Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++     +E +  IT  ++IE   GG       + AV  GG      P   +
Sbjct: 337 TLPIQLAGNIRQGGLIEYAFGITIRQVIEDFGGGTASDRP-VRAVQVGGPLGAYFPDD-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ +      +G   ++V D + D+ K       F   ESCG+CTPCR G    
Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +  M++++ GI  +  + L+ ++ + +   ++CA+G     P+   I NF      
Sbjct: 455 VETMDKVISGIRPEANLKLVEDLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510


>gi|299531429|ref|ZP_07044837.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni S44]
 gi|298720592|gb|EFI61541.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni S44]
          Length = 721

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/418 (34%), Positives = 222/418 (53%), Gaps = 9/418 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G W  +        + I+ +V  SGLRGRGGA F
Sbjct: 295 LARQERLTFARVGIIDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLDSGLRGRGGAAF 354

Query: 61  STGMKWSFMPKVCS---DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
             G+KW  +    S       Y+  NADE + GT  DR +M  +P  LIEG  IA  A+G
Sbjct: 355 PAGIKWKTVAAAESAGTGPQKYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAGLAVG 414

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176
           A   +IYVR E+      L  A+    A+G LG+N +  G    + V  GAG+Y+CGEET
Sbjct: 415 ATQGYIYVRSEYPHAIAVLNEAIARASAAGWLGANVAGSGKAFYLQVRKGAGSYVCGEET 474

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           A+LES+EGK+G  R KPP PA  GL+G PT +NNV ++A VP IL RGA++Y G+G   +
Sbjct: 475 AMLESIEGKRGIVRAKPPLPAIEGLFGKPTVINNVITLATVPIILARGAAFYQGYGMGRS 534

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           RGT  F ++G++     VE++  +T  EL+E   GG   G   + A+  GG     +   
Sbjct: 535 RGTLPFQLAGNIARGGLVEKAFGLTLRELVEDFGGGTASGRP-IKAIQVGGPLGSYVAPE 593

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                 +DY+     G+ +G   ++V D S D+ +       F   ESCG+CTPCR G+ 
Sbjct: 594 NWDD-PLDYEAYAAKGNVVGHGGLVVHDDSADMAQLARYAMEFCAIESCGKCTPCRIGST 652

Query: 357 WMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + V++R+ +  G      + LL  +   ++  ++CA+G    +P++  ++++    
Sbjct: 653 RGVEVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHYPADF 710


>gi|85857988|ref|YP_460190.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
 gi|85721079|gb|ABC76022.1| NADH-quinone oxidoreductase chain F [Syntrophus aciditrophicus SB]
          Length = 574

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 183/411 (44%), Positives = 253/411 (61%), Gaps = 12/411 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N       +L+ +   G +  + K      + I+ EVK + LRGRGGAGF  G+KW 
Sbjct: 176 LLKNRGVKDATALAVAKGNGAYQALAKAGTMKPEEILEEVKKANLRGRGGAGFPAGVKWG 235

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F+PK   D+P YL+ NADE EPGT KDR IM ++PH LIEG  IA+ AIGA  AFIY+RG
Sbjct: 236 FIPKDT-DKPVYLICNADEGEPGTYKDRQIMEYDPHLLIEGMAIAARAIGARQAFIYIRG 294

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           EF    + L+ A+ E  A G L         +DIIVH GAGAY+CGEETAL+ES+EGK+G
Sbjct: 295 EFAWIADILEKAIGEAKADGQLSE-------LDIIVHRGAGAYVCGEETALIESIEGKRG 347

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           QPR++PPFPA  GLYGCPT VNNVE++A VP I+ +GA  +  +G ENN G KLF ISG 
Sbjct: 348 QPRIRPPFPAVEGLYGCPTIVNNVETLASVPFIIEKGAEAFKQWGFENNYGFKLFGISGC 407

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           VN P   E  + ++F+EL+E   G        L A I GG SV  L A +++   MDYD 
Sbjct: 408 VNKPGVYEYPLGVSFNELMEAAGG----VKGKLKAAIVGGLSVAILKAEELQDLTMDYDS 463

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
             + G+GLG+  ++V+     I +   R   FY HESCG+C PCREG+  +++++ +L+ 
Sbjct: 464 CAKHGTGLGSGGIMVISEDFSIPELALRTIKFYAHESCGKCVPCREGSYTLVKILHKLLS 523

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           G  +  +I+ +  +   + G T+C  G+A A PIQ +++ FR   +  I +
Sbjct: 524 GQGEAADIEKILGICNTVRGLTLCPTGEAFAVPIQAMVEKFRSEFDALIKK 574


>gi|170693702|ref|ZP_02884860.1| NADH dehydrogenase (quinone) [Burkholderia graminis C4D1M]
 gi|170141484|gb|EDT09654.1| NADH dehydrogenase (quinone) [Burkholderia graminis C4D1M]
          Length = 521

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 151/413 (36%), Positives = 222/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S  D ++ G  + +   L+   D     +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSTDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 158 PAGIKWRTVRAAKA-AQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATA 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+ +  A+G LG +     +  ++ V  GAG+Y+CGEETALL
Sbjct: 217 GYIYVRSEYPHSIATLEAAIAKARAAGWLGDSVLGSAHRFELFVAKGAGSYVCGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA VGLYG PT +NNV ++A VP I  RGA++Y  FG   +RGT
Sbjct: 277 ESLEGKRGIVRAKPPVPALVGLYGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  ELI  + GG   G     AV  GG     LP  Q  
Sbjct: 337 LPFQLAGNVKQGGLVELAFGVTLRELIYDYGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+    +G+ +G   ++V D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 395 DIPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+ R+  G    R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 455 EVIARIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPYPVMSALDHFPEDF 507


>gi|222054365|ref|YP_002536727.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221563654|gb|ACM19626.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 420

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/424 (39%), Positives = 245/424 (57%), Gaps = 8/424 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTG 63
           +  +F +    +  + ++    G ++ + K L     D +   V  SGLRGRGGAGF TG
Sbjct: 2   EQVLFRHNRPGRAATFAEYCGDGGFEALKKALGGLSPDDVQQMVVDSGLRGRGGAGFPTG 61

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            KWSF+P+     P +L+ N DE EPGT KDR ++   P++LIEG ++A +AIG H AFI
Sbjct: 62  KKWSFVPRNLPG-PRWLICNCDEMEPGTYKDRVLLEANPYSLIEGILLACYAIGVHHAFI 120

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           ++R  +     +L+  + E   +  +G N    G+   I VH  AG YICGEETAL+ +L
Sbjct: 121 FIRRGYETAAANLRHGIAEADKAEFIGDNIMGSGFSCAIDVHVSAGRYICGEETALMNAL 180

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKL 241
           EGK+  PR KPPFPA  GL+G PT VNNVE+++ +P I+ +G++W+ G  +     GTKL
Sbjct: 181 EGKRANPRSKPPFPAVKGLWGGPTVVNNVETLSNIPAIVAKGSAWFKGLAKVPEAAGTKL 240

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
           F ISGHV     VE  M +T  E+I+  CGG+  G     A IPGG+S P   A      
Sbjct: 241 FCISGHVRNTVCVELPMGMTLGEIIDGPCGGMLPGRK-FKACIPGGASTPFFTADHFA-V 298

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            MD+D + + GS LGT  ++V D +T ++     L  F+  ESCG CTPCREG  ++  V
Sbjct: 299 PMDFDAVAKAGSRLGTGGIVVFDENTCMVGVTLNLIRFFARESCGWCTPCREGLPFVHEV 358

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + R+ +G  ++ ++++L E    +   + CAL   A  P++GL++ F+  I E I +   
Sbjct: 359 LTRMEQGRGREEDLEILSEHVHYL-NYSFCALAPGAMGPVEGLLRLFKDEIREHIRKNG- 416

Query: 422 CNFQ 425
           C F+
Sbjct: 417 CPFK 420


>gi|188997422|ref|YP_001931673.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932489|gb|ACD67119.1| NADH dehydrogenase (quinone) [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 427

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 167/418 (39%), Positives = 234/418 (55%), Gaps = 16/418 (3%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +       +   + + ++ G +  + K L +   + II  V+ S LRGRGGAGF TG KW
Sbjct: 19  LLRRCKEPRTVDIEEYITTGGYSALKKALNRFTPEDIIVLVEESTLRGRGGAGFPTGRKW 78

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F        P YLV NADESEPGT KDR I+  +PH LIEG +I+++AIGA   FIY+R
Sbjct: 79  RFAISNPK--PRYLVCNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAERGFIYIR 136

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+    + L+ A+ E    G LG N     +  DI V+ GAGAYICGEETAL+ESLEGK
Sbjct: 137 GEYPAGAKILENAIKEARERGFLGKNILGTDFSFDISVYRGAGAYICGEETALIESLEGK 196

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PRLKPP+P + GL+G PT VNNVE++A +P I+    S+Y   G     G KLF IS
Sbjct: 197 RGHPRLKPPYPVSEGLFGKPTVVNNVETLANIPIIITY-ESYYMNIGPAGYYGPKLFPIS 255

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN P   E +M IT  ELI    GG++       AV  G   V    + +     MDY
Sbjct: 256 GKVNKPGVYELTMDITLRELI-DIAGGMK-DGKKFKAVFAGALGVY---SERDLDIPMDY 310

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
                     GT   IV+     II ++  ++ F+ HESCG+CTPCR GT  ++ ++++ 
Sbjct: 311 SP----KGFGGTGTTIVLAEDDCIIDSLIVIAEFFHHESCGKCTPCRIGTYELLNILKKF 366

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            +GIA ++++  L  + +NI   +IC LG +A   +   ++ F+      I+   +C 
Sbjct: 367 QEGIATEKDLQYLEHLGRNIPVGSICGLGYSAPNALMDALRKFKDEFIAHIN--KQCP 422


>gi|237755575|ref|ZP_04584192.1| NADH-quinone oxidoreductase, f subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692274|gb|EEP61265.1| NADH-quinone oxidoreductase, f subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 427

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 166/418 (39%), Positives = 233/418 (55%), Gaps = 16/418 (3%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +       +   + + ++ G +  + K L +   + II  V+ S LRGRGGAGF TG KW
Sbjct: 19  LLRRCKEPRTVDIEEYITTGGYSALKKALNRFTPEDIIVLVEESTLRGRGGAGFPTGRKW 78

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            F        P YLV NADESEPGT KDR I+  +PH LIEG +I+++AIGA   FIY+R
Sbjct: 79  RFAVSNSK--PRYLVCNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAERGFIYIR 136

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+    + L+ A+ E    G LG N     +  DI V+ GAGAYICGEETAL+ESLEGK
Sbjct: 137 GEYPAGAKILENAIKEARERGFLGKNILGTDFSFDISVYRGAGAYICGEETALIESLEGK 196

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PRLKPP+P + GL+G PT VNNVE++A +P I+    S+Y   G     G KLF IS
Sbjct: 197 RGHPRLKPPYPVSEGLFGKPTVVNNVETLANIPIIVTY-ESYYMNIGPAGYYGPKLFPIS 255

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G VN P   E +M IT  ELI    GG++       AV  G      L + +     MDY
Sbjct: 256 GKVNKPGVYELTMDITLRELI-DIAGGMK-DGKKFKAVFAGALG---LYSERDLDIPMDY 310

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
                     GT   IV+     II ++  ++ F+ HESCG+CTPCR G+  ++ ++++ 
Sbjct: 311 SP----KGFGGTGTTIVLAEDDCIIDSLIVIAEFFHHESCGKCTPCRIGSYELLNILKKF 366

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            +G A ++++  L  + +NI   +IC LG +A   +   +K F+      I+   +C 
Sbjct: 367 QEGTATEKDLQYLEHLGRNIPVGSICGLGYSAPNALMDALKKFKDEFIAHIN--KQCP 422


>gi|297563040|ref|YP_003682014.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296847488|gb|ADH69508.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 656

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 154/401 (38%), Positives = 221/401 (55%), Gaps = 5/401 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +   +  +   SL D  + G +  + + L  G   +I EV  SGL GRGGA F TG KW 
Sbjct: 234 LLRRIGTVDPLSLDDYRAAGGYAALRRALRLGPAGVIREVSDSGLVGRGGAAFPTGRKWQ 293

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
              +   D PHYLV NADESEPGT KDR +M  +P +++E   IA +A+GA   ++Y+RG
Sbjct: 294 ATAQQP-DGPHYLVCNADESEPGTFKDRVLMEGDPFSVVEAMTIAGYAVGARTGYLYIRG 352

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+ R    L+ AV      GLLG +    G+  DI +  GAGAYICGEETA+  S+EG++
Sbjct: 353 EYPRALRHLENAVALARGRGLLGPDILGSGFAFDIEIRRGAGAYICGEETAIFGSIEGQR 412

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR KPPFP   GL+G PT VNNVE++  V  +L  G   Y+  G   + G KLF +SG
Sbjct: 413 GEPRSKPPFPVEKGLFGKPTAVNNVETLVNVLPVLLMGGPAYAAVGTGQSTGPKLFCLSG 472

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E     T  +LIE   G   G    + AV+ GG++   +   ++    + ++
Sbjct: 473 GVRRPGLYELPFGATLRDLIEAAGGMPEG--RTIQAVLLGGAAGTFVRGDEL-DIPLTFE 529

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G +  G+ LG+  V+V+D + D++  + R++ F++ ESCGQC PCR GT      + R+ 
Sbjct: 530 GARAAGTSLGSGVVLVLDDTADLVATLVRVAAFFRDESCGQCVPCRVGTVRQEESLLRIR 589

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
            G     E+ LL EV   +   +IC LG  A   ++  I  
Sbjct: 590 AGGDAAAEVPLLREVGLAMRDASICGLGQTAWNAVESAIDR 630


>gi|167586515|ref|ZP_02378903.1| NADH dehydrogenase (quinone) [Burkholderia ubonensis Bu]
          Length = 525

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +       +   L    D   + +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLRHDGLAGLKNALALDGDAACDALIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRHASA-NQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG++     +  ++ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIARARDAGWLGASVLGSAHAFELHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  FG   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDFGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+    GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRHGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLP-EHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYAAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+ +G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRRGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|163853801|ref|YP_001641844.1| NADH dehydrogenase (quinone) [Methylobacterium extorquens PA1]
 gi|163665406|gb|ABY32773.1| NADH dehydrogenase (quinone) [Methylobacterium extorquens PA1]
          Length = 519

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 147/416 (35%), Positives = 218/416 (52%), Gaps = 5/416 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   S+ D  + G +  ++  L+ G + I+ +V+ SGLRGRGGAG
Sbjct: 98  FLAKQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEVALKLGAEGIVAQVRDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW+ +    SD   Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA 
Sbjct: 158 FPAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+ +  ++L+ A+     +G+LG N    G    + V  GAGAYICGEET+L
Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  G  G PT VNNV +   VP IL  GA  Y+ +G   + G
Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++     +E +  IT  ++IE   GG   G   + AV  GG      P   +
Sbjct: 337 TLPIQLAGNIRQGGLIEYAFGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFPDD-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ +      +G   ++V D + D+ K       F   ESCG+CTPCR G    
Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +  M++++ GI  +  + L+ ++ + +   ++CA+G     P+   I NF      
Sbjct: 455 VETMDKVISGIRPEANLKLVEDLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510


>gi|73540324|ref|YP_294844.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
 gi|72117737|gb|AAZ60000.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
          Length = 521

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 155/414 (37%), Positives = 219/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q+R+     G+    SL D  +   +  +++ L      I+ EV  SGLRGRGGA 
Sbjct: 101 FLKRQERLTFARVGITDPLSLDDYRAHEGYAGLERALAMEPAAIVQEVTDSGLRGRGGAA 160

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    S    Y+V NADE + GT  DR +M  +P  LIEG  IA  A+GA 
Sbjct: 161 FPTGIKWKTVLGAKS-AVKYIVCNADEGDSGTFSDRMVMEDDPFVLIEGMTIAGLAVGAE 219

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      L AA+    A+G LG +    G    + V  GAGAY+CGEETAL
Sbjct: 220 YGYIYCRSEYPHAIAVLNAAIATATAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 279

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  GL+G PT +NNV S+A VP IL RGA  Y  FG   +RG
Sbjct: 280 LESLEGKRGVVRAKPPLPALEGLFGKPTVINNVISLATVPVILARGAQHYRDFGMGRSRG 339

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE++  +T  EL+  + GG R G   + AV  GG     LP  + 
Sbjct: 340 TLPFQLAGNIKQGGLVEKAFGVTLRELLYDYGGGTRSG-RAVRAVQVGGPLGAYLPEAR- 397

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDY+     G  +G   ++V D + D+ +       F   ESCG+CTPCR G+   
Sbjct: 398 FDVPMDYEAYAAFGGVVGHGGIVVFDETVDMARQARYAMEFCAIESCGKCTPCRIGSTRG 457

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + VM+R++ G    + + L+ ++   +   ++CA+G    +P+   +  F    
Sbjct: 458 VEVMDRIIAGNEPVKHVKLVRDLCDTMLNGSLCAMGGMTPYPVLSALNEFPEDF 511


>gi|215694413|dbj|BAG89406.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215704716|dbj|BAG94744.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 411

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 229/336 (68%), Positives = 267/336 (79%), Gaps = 1/336 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +M RG W     ++ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 76  LKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLRGRGGAGFP 135

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +G+KWSFMPKV   RP YLVVNADESEPGTCKDR+IMRH+PH L+EGC+IA   + A  A
Sbjct: 136 SGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAA 195

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE++ ER +L  A +E YA+GLLG N+   GYD D+ +H GAGAYICGEETALLE
Sbjct: 196 YIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYICGEETALLE 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+NN GTK
Sbjct: 256 SLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SGHVN PCTVEE MSI   ELIEKHCGG+RGGWDNLLA+IPGGSSVP LP      
Sbjct: 316 LFCVSGHVNKPCTVEEEMSIPLKELIEKHCGGVRGGWDNLLAIIPGGSSVPLLPKHICDD 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            +MDYD LK + SGLGTAAVIVMD+STD++ AI RL
Sbjct: 376 VLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARL 411


>gi|167837458|ref|ZP_02464341.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           MSMB43]
          Length = 522

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 215/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G    +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPVSIDDYVAHGGLAGLKNALALDGAVACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVREAAA-AQKYIVCNADEGDSGTFSDRLLMESDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARARAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALSGLFGQPTVINNVITLATVPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++         F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + ++  G   ++++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIAKIRAGDTSEKQVRLLRDLCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|240141253|ref|YP_002965733.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta
           subunit [Methylobacterium extorquens AM1]
 gi|240011230|gb|ACS42456.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta
           subunit [Methylobacterium extorquens AM1]
          Length = 519

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/416 (35%), Positives = 216/416 (51%), Gaps = 5/416 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   S+ D  + G +  ++  L+     I+ +V+ SGLRGRGGAG
Sbjct: 98  FLAKQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEAALKLDAKGIVAQVRDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW+ +    SD   Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA 
Sbjct: 158 FPAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+ +  ++L+ A+     +G+LG N    G    + V  GAGAYICGEET+L
Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  G  G PT VNNV +   VP IL  GA  Y+ +G   + G
Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++     +E +  IT  ++IE   GG   G   + AV  GG      P   +
Sbjct: 337 TLPIQLAGNIRQGGLIEYAFGITIRQVIEDFGGGTASGRP-VRAVQVGGPLGAYFPDD-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ +      +G   ++V D + D+ K       F   ESCG+CTPCR G    
Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +  M++++ GI  +  + L+ ++ + +   ++CA+G     P+   I NF      
Sbjct: 455 VETMDKVISGIRPEANLKLVEDLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510


>gi|167619115|ref|ZP_02387746.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           Bt4]
          Length = 522

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 215/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRDAAA-AQKYIVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARSRAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPVPALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGTGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++         F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + ++  G   ++++ LL E+   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIAKIRAGDTSEKQVRLLRELCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|187924996|ref|YP_001896638.1| NADH dehydrogenase (quinone) [Burkholderia phytofirmans PsJN]
 gi|187716190|gb|ACD17414.1| NADH dehydrogenase (quinone) [Burkholderia phytofirmans PsJN]
          Length = 520

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 221/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L+   D     +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 158 PAGIKWRTVRGAKA-AQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L+AA+ +  A+G LG       +  ++ V  GAGAY+CGEETALL
Sbjct: 217 GHIYVRSEYPHSIATLEAAIAKARAAGWLGDRVLGSAHRFELFVAKGAGAYVCGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA VGL+G PT +NNV ++A VP I  RGA++Y  FG   +RGT
Sbjct: 277 ESLEGKRGIVRAKPPVPALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+  + GG   G     AV  GG     LP  Q  
Sbjct: 337 LPFQLAGNVKQGGLVELAFGVTLRELLYDYGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+    +G+ +G   ++V D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 395 DIPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+ R+  G    R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 455 EVIGRIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHFPEDF 507


>gi|149203817|ref|ZP_01880786.1| NADH dehydrogenase (quinone) [Roseovarius sp. TM1035]
 gi|149142934|gb|EDM30976.1| NADH dehydrogenase (quinone) [Roseovarius sp. TM1035]
          Length = 502

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 214/413 (51%), Gaps = 7/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  Q R+ F     +    L D  + G    + + +      I+ EV  SGLRGRGGAGF
Sbjct: 87  MKRQTRLTFARTGVIDPLDLEDYAAHGGLVGLRRAIAMDAHDIVAEVTKSGLRGRGGAGF 146

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  +    Y+V NADE + GT  DR IM  +P +L+EG  IA   +GA  
Sbjct: 147 PTGIKWKTVQEAQAP-QKYIVCNADEGDSGTFADRMIMEGDPFSLVEGMAIAGIGVGATR 205

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+      +  AV+    +G+LGS+    G+  D+ +  GAGAY+CGEETALL
Sbjct: 206 GYVYLRSEYPDAIAVMCRAVEIARGAGVLGSDVLGSGHAFDMEIRVGAGAYVCGEETALL 265

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G  R KPP PA  G  G PT VNNV S+A VP I  RGA  Y+ FG   +RGT
Sbjct: 266 NSLEGKRGVVRAKPPLPALEGFLGRPTVVNNVISLATVPVIFERGAQHYADFGLGRSRGT 325

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V      E +  IT  E++    GG       + AV  GG     +P     
Sbjct: 326 VTLQIAGNVARGGLFETAFGITLGEVVNDLGGGT-MTGRPVKAVQVGGPLGAYIPVSN-F 383

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A + Y+ L   G  LG A ++V D S D+++       F   ESCG+CTPCR G    +
Sbjct: 384 DAPLGYEELDAKGGLLGHAGLVVFDDSADMLQMARFAMEFCAVESCGKCTPCRIGAVRGV 443

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++R+  G      I LL ++ + ++  ++CALG    +P+   + +F    
Sbjct: 444 ETIDRIAAGDGTA--IPLLTDLCETMKDGSLCALGGFTPFPVMSALTHFPNDF 494


>gi|84686201|ref|ZP_01014096.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665728|gb|EAQ12203.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Rhodobacterales bacterium HTCC2654]
          Length = 499

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/414 (35%), Positives = 215/414 (51%), Gaps = 7/414 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
              +Q R+ F     +    L    + G    +++ L+     ++ E KASGLRGRGGAG
Sbjct: 83  FFANQTRLTFQRCGVIDPLDLDAYRAHGGLTGLERALDMDGLGVVEEAKASGLRGRGGAG 142

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + K  +D   Y+V NADE + GT  DR IM  +P +LIEG  IA   +GA 
Sbjct: 143 FPTGIKWETVAKAEAD-QKYIVCNADEGDSGTFADRMIMEGDPFSLIEGMAIAGVGVGAT 201

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+R E+      ++AAV+   A+GLLG++    G   D+ +  GAGAY+CGEET+L
Sbjct: 202 KGYVYLRSEYPDAIRVMKAAVEVARANGLLGASLLGKGPAFDMEIRVGAGAYVCGEETSL 261

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA  G  G PT VNNV S+A +P I  +GA+ Y+ FG   ++G
Sbjct: 262 LNSLEGKRGVVRAKPPLPALEGFLGKPTVVNNVISLATIPVIFEKGAAHYANFGLGRSKG 321

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V Y    E +  +   E++    GG R G   + AV  GG       A   
Sbjct: 322 TIPLQIAGNVKYGGLYEIAFGLPLGEIVNDIAGGTRSGQP-VKAVQVGGPLGAYF-APHQ 379

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                 Y+     G  +G A + V D + D++        F   ESCG+CTPCR G    
Sbjct: 380 FDTPFGYEEFDGAGGLIGHAGLTVFDDTADMLGMARFAMEFCAVESCGKCTPCRIGAVRG 439

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  ++R+  G    +E+  L ++ + +   ++CALG    +P+   +  F    
Sbjct: 440 VETIDRIAAGDMAAKEL--LTDLCETMTDGSLCALGGFTPYPVMSAMTLFPEDF 491


>gi|323526974|ref|YP_004229127.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1001]
 gi|323383976|gb|ADX56067.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1001]
          Length = 521

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 150/413 (36%), Positives = 221/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L+   D     +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALQTDGDAACEALIESGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +       Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 158 PAGIKWRTV-RAARAAQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGASA 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+ +  A+G LG +        ++ V  GAG+Y+CGEETALL
Sbjct: 217 GYIYVRSEYPHSIATLEAAIAKARAAGWLGDSVLGCPLRFELFVAKGAGSYVCGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA VGLYG PT +NNV ++A VP I  RGA++Y  FG   +RGT
Sbjct: 277 ESLEGKRGIVRAKPPVPALVGLYGQPTVINNVITLATVPIIFARGAAYYKDFGMGRSRGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     AV  GG     LP  Q  
Sbjct: 337 LPFQLAGNVKQGGLVELAFGVTLRELLYDFGGGTASGRPA-RAVQVGGPLGTYLPESQ-W 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              MDY+    +G+ +G   ++V D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 395 DIPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCAIESCGKCTPCRIGSTRGV 454

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+ R+  G    R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 455 EVIGRIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPYPVLSALDHFPEDF 507


>gi|307822805|ref|ZP_07653036.1| NADH-quinone oxidoreductase, F subunit [Methylobacter tundripaludum
           SV96]
 gi|307736409|gb|EFO07255.1| NADH-quinone oxidoreductase, F subunit [Methylobacter tundripaludum
           SV96]
          Length = 423

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 172/414 (41%), Positives = 248/414 (59%), Gaps = 13/414 (3%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGM 64
           DR FT        +L+D  S G +  + K L + +   + + VK +GLRGRGGAGF TG+
Sbjct: 15  DRAFT--------TLADYESTGGYQGLRKALAELQPKDVQQWVKDAGLRGRGGAGFGTGL 66

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KWS +P     +  YLV NADE EPGT KDR ++  +PH LIEG +IA++AI A  A+I+
Sbjct: 67  KWSLVPLDDLSQTRYLVANADEMEPGTFKDRMLLEQDPHQLIEGMIIAAYAIQAQKAYIF 126

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           +RGE+   +  L+ A+ E  + G LG +     ++++I++H GAG YICGEETALL +LE
Sbjct: 127 LRGEYHVAKFRLEQALLEAKSKGYLGEHILNSAFNLEIVLHTGAGRYICGEETALLNALE 186

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           GK+  PR KPPFP   GL+G PT VNNVE++  VP IL  G  WY G  R  ++GTKLF 
Sbjct: 187 GKRATPRAKPPFPLVSGLWGKPTVVNNVETLCNVPHILHYGVEWYQGLARGVDKGTKLFG 246

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
             G V +P   E  M     E+IE+H GG+R G+  L   +PGG+S   L    +   +M
Sbjct: 247 AGGRVKHPGLWELPMGTPIREIIEQHAGGMRDGYK-LRGFLPGGASTDFLLPEHL-DVVM 304

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D++ + + GS +GT  +IV+D  T  ++ +  L  F+  ESCG CTPCR+G  W + +++
Sbjct: 305 DFEAVAKAGSRMGTGVIIVLDDKTCPVRMVLNLEQFFAQESCGWCTPCRDGLPWTVTLLK 364

Query: 364 RLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            ++ G  +  ++D L  +++ +  G T CAL   A  P+Q  +K FR   E  I
Sbjct: 365 DIIAGKGRIEDLDTLAGLTRMLGPGNTFCALAPGAVEPLQSALKYFRADFERYI 418


>gi|264679977|ref|YP_003279886.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni CNB-2]
 gi|262210492|gb|ACY34590.1| Respiratory-chain NADH dehydrogenase domain, 51 [Comamonas
           testosteroni CNB-2]
          Length = 714

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 145/418 (34%), Positives = 222/418 (53%), Gaps = 9/418 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   SL D  + G W  +        + I+ +V  SGLRGRGGA F
Sbjct: 288 LARQERLTFARVGIIDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLDSGLRGRGGAAF 347

Query: 61  STGMKWSFMPKVCS---DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIG 117
             G+KW  +    S       Y+  NADE + GT  DR +M  +P  LIEG  IA  A+G
Sbjct: 348 PAGIKWKTVAAAESAGTGPQKYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAGLAVG 407

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEET 176
           A   +IYVR E+      L  A+    A+G LG+N +  G    + V  GAG+Y+CGEET
Sbjct: 408 ATQGYIYVRSEYPHSIAVLNEAIARASAAGWLGANVAGSGKAFYLQVRKGAGSYVCGEET 467

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           A+LES+EGK+G  R KPP PA  GL+G PT +NNV ++A VP IL RGA++Y G+G   +
Sbjct: 468 AMLESIEGKRGIVRAKPPLPAIEGLFGKPTVINNVITLATVPIILARGAAFYQGYGMGRS 527

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           RGT  F ++G++     VE++  +T  EL++   GG   G   + A+  GG     +   
Sbjct: 528 RGTLPFQLAGNIARGGLVEKAFGLTLRELVQDFGGGTASGRP-VKAIQVGGPLGSYVAPE 586

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                 +DY+     G+ +G   ++V D S D+ +       F   ESCG+CTPCR G+ 
Sbjct: 587 DWDD-PLDYEAYAAKGNVVGHGGLVVHDDSADMAQLARYAMEFCAIESCGKCTPCRIGST 645

Query: 357 WMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + V++R+ +  G      + LL  +   ++  ++CA+G    +P++  ++++    
Sbjct: 646 RGVEVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHYPADF 703


>gi|149374623|ref|ZP_01892397.1| NADH-quinone oxidoreductase, F subunit [Marinobacter algicola
           DG893]
 gi|149361326|gb|EDM49776.1| NADH-quinone oxidoreductase, F subunit [Marinobacter algicola
           DG893]
          Length = 460

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 155/404 (38%), Positives = 234/404 (57%), Gaps = 8/404 (1%)

Query: 20  LSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L + + +  + +V   L+ G    II  +K + +RGRGGAGFS G+KWS   +  +    
Sbjct: 45  LDEYLRKDGYQSVRAALDNGNPQAIIATMKDANVRGRGGAGFSAGLKWSLTLQGGNMPRG 104

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YL+ NADE EPGT KDR +M  +PH LIEG ++ + A  +   +I++RGE++     L  
Sbjct: 105 YLICNADEMEPGTFKDRLLMEQQPHLLIEGMILGALANNSFYGYIFLRGEYVEAARVLNR 164

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+DE   +G LG++    G+D DI VH GAG YICGEETAL+ SLEGK+  PR KPPFP 
Sbjct: 165 ALDEAREAGWLGADINGSGFDFDIAVHTGAGRYICGEETALINSLEGKRANPRAKPPFPG 224

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
             G +G P+ VNNVE++  VP ++ +GA WY      R ++ G+KL+ +SG V  P   E
Sbjct: 225 QSGAWGKPSVVNNVETLCNVPAVILKGADWYQALSGDRTDDGGSKLYGVSGPVEKPGLWE 284

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  T  E++E+  G       +L A +PGG+S   L    +    +D+D + + GS L
Sbjct: 285 LPMGTTGAEILERAGGM--RANRSLKAWLPGGASTGFLLPEHL-DLPLDFDTVGKEGSRL 341

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  + V+ +   ++  +  L  F+  ESCG CTPCR+G  W ++++  L  G  +  +I
Sbjct: 342 GTGLLTVVPQEQSMVALMRNLEEFFARESCGWCTPCRDGLPWTVKLLRALELGQGETGDI 401

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +LL +++ +   G T CA    AA P+Q  +K+FR   E+ + +
Sbjct: 402 ELLDKLAADCGPGLTFCAHAPGAAMPLQTALKHFRQEFEQGVGK 445


>gi|73748098|ref|YP_307337.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1]
 gi|147668874|ref|YP_001213692.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|289432124|ref|YP_003461997.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|73659814|emb|CAI82421.1| putative [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. CBDB1]
 gi|146269822|gb|ABQ16814.1| NADH dehydrogenase subunit F [Dehalococcoides sp. BAV1]
 gi|288945844|gb|ADC73541.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 417

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 152/418 (36%), Positives = 228/418 (54%), Gaps = 9/418 (2%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + D   I  +L       +   ++ G +  + K L    + +I EVK S L GRGGA F 
Sbjct: 1   MKDLKIITRHLNTANSADIDVYLADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFP 60

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K  +  P Y+V NA E EPGT KDR I++++PH ++EG +IA++A+G    
Sbjct: 61  TGLKWELTRKEKA-NPKYIVCNASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQG 119

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FI+ R  + +E E  Q A+D+    G LG N     + +DI  +  AGAYICGEETAL E
Sbjct: 120 FIHAREVYTQEIELFQKAIDQATERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFE 179

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +G P  +PP+P  VGL   PTTVNNVE++  +P I+  GA W++  G  +  GTK
Sbjct: 180 SLEGHRGIPATRPPYPVQVGLMDKPTTVNNVETLCNIPAIINNGADWFASIGHPDYPGTK 239

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SG+V  P   E  +     +L+E   GG+ G      AV+PGG S   L       
Sbjct: 240 LFCLSGNVKKPGVFELPLGTNLKDLLE-AGGGVDG---KFKAVLPGGISSSLLTET---D 292

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+  L + G+ LG+ AVIV++  T ++     ++ F+  E CG+C+ CREGT     
Sbjct: 293 ISLDFKTLAKAGTMLGSGAVIVINSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAE 352

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++ R  +G   + E++ L E+ + ++    C LG  A       I+NF+     ++ +
Sbjct: 353 ILSRFSRGQGNRNELEWLLELHEVMKDTASCGLGQVALNVAASAIRNFKGEFLAQVRK 410


>gi|325274757|ref|ZP_08140793.1| NADH dehydrogenase (quinone) [Pseudomonas sp. TJI-51]
 gi|324100101|gb|EGB97911.1| NADH dehydrogenase (quinone) [Pseudomonas sp. TJI-51]
          Length = 519

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 154/416 (37%), Positives = 221/416 (53%), Gaps = 8/416 (1%)

Query: 2   LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    SL D  + G +  ++  +      ++  V  SGLRGRGGA F
Sbjct: 98  LNTQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 158 PAGIKWRTVRDAGAG-QKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADM 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+      L+ A     A+G LG+N +  G   ++ V  GAGAYICGEETALL
Sbjct: 217 GYIYVRSEYPDAIRVLEQAFAIARAAGYLGANVAGSGRAFELQVRVGAGAYICGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT
Sbjct: 277 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V +   VE +  +T  EL+E + GG   G   L A   GG     +P     
Sbjct: 337 MPFQLAGNVRHGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    MG+ LG   V+V D + ++         F   ESCG+CTPCR G+   M
Sbjct: 395 DTPLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGM 454

Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++RL+         D   LL ++   ++  ++CA+G   A+P+   +K F    
Sbjct: 455 EVVDRLIASSETGERHDHALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYFPADF 510


>gi|167032816|ref|YP_001668047.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1]
 gi|166859304|gb|ABY97711.1| NADH dehydrogenase (quinone) [Pseudomonas putida GB-1]
          Length = 519

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/416 (36%), Positives = 219/416 (52%), Gaps = 8/416 (1%)

Query: 2   LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    SL D  + G +  ++  +      ++  V  SGLRGRGGA F
Sbjct: 98  LKTQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGADVVAAVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    ++V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 158 PAGIKWRTVRDAGAG-QKFVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     SL  A      +G LG++ +  G   D+ V  GAGAYICGEETALL
Sbjct: 217 GYIYVRSEYPDAIRSLDQAFTIARDAGYLGTDVAGSGQAFDLEVRVGAGAYICGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT
Sbjct: 277 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  EL++ + GG   G   L A   GG     +P     
Sbjct: 337 MPFQLAGNIRQGGLVERAFGLTLRELVDGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    MG+ LG   V+V D + ++         F   ESCG+CTPCR G+   M
Sbjct: 395 DTPLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGM 454

Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++RL+         D   LL ++   ++  ++CA+G   A+P+   +K F    
Sbjct: 455 EVVDRLIASSDLAERHDQALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYFPADF 510


>gi|197116576|ref|YP_002137003.1| NADH dehydrogenase I subunit F [Geobacter bemidjiensis Bem]
 gi|197085936|gb|ACH37207.1| NADH dehydrogenase I, F subunit [Geobacter bemidjiensis Bem]
          Length = 421

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 163/421 (38%), Positives = 242/421 (57%), Gaps = 8/421 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +F +    +  +  +  S G ++ + + +       +   V  SGLRGRGGAGF TG KW
Sbjct: 5   LFRHNRRDRSVAFKEYRSEGGFEALKRAITGMTPAEVQQTVIDSGLRGRGGAGFPTGKKW 64

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+P+     P +++ N DE EPGT KDR ++ H P++LIEG  +A +A+G    FI++R
Sbjct: 65  SFVPRDLPG-PRWIICNCDEMEPGTYKDRVLLEHNPYSLIEGMTLACYALGVRHGFIFIR 123

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
             + +  E+L  A+DE    G LG       + +DI +H  AG YICGEETAL+ +LEGK
Sbjct: 124 KGYEQAAENLARAIDEAKKEGFLGERILGSEHSIDIDLHLSAGRYICGEETALINALEGK 183

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSI 244
           +  PR KPPFPA  GL+  PT VNNVE++A +P IL RGA+W+ G        G+KLF +
Sbjct: 184 RPNPRQKPPFPAVKGLWAGPTVVNNVETLANIPGILARGAAWFKGLAMNPEGAGSKLFCV 243

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V     VE  + I   ++I+  CGG+R G     A IPGG+S   L A  +    MD
Sbjct: 244 SGSVKDRACVELPIGIPLGDIIDGPCGGMRLG-KRFKACIPGGASTQFLTAEHL-KVPMD 301

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + ++GS LG+  +IV D+   +++A   L  F+  ESCG CTPCREG  ++  ++ R
Sbjct: 302 YDPVAKVGSRLGSGGIIVFDQDHCLVEATLNLITFFARESCGWCTPCREGLPYVREILTR 361

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +  G  ++ +I +L E  K +   + CAL   A  P+ GL+++F   + E I +  +C  
Sbjct: 362 IETGYGKEDDIAILREHIKYL-NYSFCALAPGAMAPLDGLLRHFEDEVREHIVK-KKCPL 419

Query: 425 Q 425
           +
Sbjct: 420 K 420


>gi|148548760|ref|YP_001268862.1| NADH dehydrogenase (quinone) [Pseudomonas putida F1]
 gi|148512818|gb|ABQ79678.1| NADH dehydrogenase (quinone) [Pseudomonas putida F1]
          Length = 519

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 150/416 (36%), Positives = 218/416 (52%), Gaps = 8/416 (1%)

Query: 2   LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    SL D  + G +  ++  +      ++  V  SGLRGRGGA F
Sbjct: 98  LKTQQRLLFARAGITRPLSLDDYRAHGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 158 PAGIKWRTVRDAGAG-QKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+      L  A      +G LG++ +  G   D+ V  GAGAYICGEETALL
Sbjct: 217 GYVYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT
Sbjct: 277 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  EL+E + GG   G   L A   GG     +P     
Sbjct: 337 MPFQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ LG   V+V D + ++         F   ESCG+CTPCR G+   M
Sbjct: 395 DTPLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGM 454

Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++RL+         D   LL ++   ++  ++CA+G   A+P+   +K F    
Sbjct: 455 EVVDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYFPADF 510


>gi|254563762|ref|YP_003070857.1| NAD-dependent formate dehydrogenase, Molybdenum containing subunit
           beta [Methylobacterium extorquens DM4]
 gi|254271040|emb|CAX27047.1| NAD-dependent formate dehydrogenase, Molybdenum containing, beta
           subunit [Methylobacterium extorquens DM4]
          Length = 519

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 145/416 (34%), Positives = 217/416 (52%), Gaps = 5/416 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   S+ D  + G +  ++  L+   + I+ +V+ SGLRGRGGAG
Sbjct: 98  FLAKQHRLTFHRCGVVDPVSVEDYRAHGGYRGLEAALKLDAEGIVAQVRDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW+ +    SD   Y+V NADE + GT  DR +M  +P  LIEG  IA+ A GA+
Sbjct: 158 FQAGIKWNTVMLAQSD-QKYVVCNADEGDSGTFADRIMMEGDPFNLIEGMTIAAVATGAN 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+ +  ++L+ A+     +G+LG N    G    + V  GAGAYICGEET+L
Sbjct: 217 RGYIYCRSEYPQSFKTLRDAIANGVRAGVLGDNILGSGKSFHLEVRLGAGAYICGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA  G  G PT VNNV +   VP IL  GA  Y+ +G   + G
Sbjct: 277 LESLEGKRGIVRAKPPIPALKGFLGKPTLVNNVMTFTAVPYILEHGAKSYAEYGMGRSLG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++     +E +  IT  ++IE   GG       + AV  GG      P   +
Sbjct: 337 TLPIQLAGNIKQGGLIEYAFGITIRQVIEDFGGGT-MSGRPVRAVQVGGPLGAYFPDE-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+ +      +G   ++V D + D+ K       F   ESCG+CTPCR G    
Sbjct: 395 LDTPLDYEAMAAKKGLVGHGGIVVFDDTVDMAKQARFAFEFCATESCGKCTPCRVGATRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +  M++++ GI  +  + L+ ++ + +   ++CA+G     P+   I NF      
Sbjct: 455 VETMDKVISGIRPEANLKLVADLCEIMTDGSLCAMGGLTPMPVMSAITNFPEDFRR 510


>gi|83719980|ref|YP_442161.1| formate dehydrogenase subunit beta [Burkholderia thailandensis
           E264]
 gi|257138350|ref|ZP_05586612.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           E264]
 gi|83653805|gb|ABC37868.1| formate dehydrogenase, beta subunit [Burkholderia thailandensis
           E264]
          Length = 522

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 215/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSVDDYVAHGGLEGLKNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRDAAA-AQKYIVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L  A+    A+G LG++     +  ++ V  GAGAY+CGEETALL
Sbjct: 218 GHIYVRSEYPHAIAALGEAIARSRAAGWLGASVLGTAHAFELHVAKGAGAYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A VP I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPVPALSGLFGQPTVINNVITLATVPIIFARGAAFYRDYGTGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+    GG   G     A   GG     LP  Q  
Sbjct: 338 LPFQLAGNVKRGGLVELAFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLPDSQ-W 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++         F   ESCG+CTPCR G+   +
Sbjct: 396 DIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAALAEYAMHFCALESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + ++  G   ++++ LL E+   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIAKIRAGDTSEKQVRLLRELCDTMTAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|223937081|ref|ZP_03628989.1| NADH dehydrogenase (quinone) [bacterium Ellin514]
 gi|223894362|gb|EEF60815.1| NADH dehydrogenase (quinone) [bacterium Ellin514]
          Length = 478

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 191/432 (44%), Positives = 252/432 (58%), Gaps = 37/432 (8%)

Query: 19  SLSDSMSRGHWDNVDKILE------------KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
            +   +  G ++ + K L              G + I  +VK SGLRGRGGAGFS G+KW
Sbjct: 20  DMECYLRHGGYEALKKALAIQPKSLPDGKSMSGPEQIREDVKVSGLRGRGGAGFSCGLKW 79

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           SF+ +  S +P YL+ NADESEPGT KDR I+  +PH +IEG +I+ FA     A+IY+R
Sbjct: 80  SFVDR-KSGKPIYLICNADESEPGTFKDRQILHKDPHQMIEGMIISCFANDVKLAYIYIR 138

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GEF      L  A+ E  A   LG N    GYD++I VH GAGAYICGEET L+ESLEGK
Sbjct: 139 GEFPDGARILNKALKEARAKNFLGKNILGSGYDLEIHVHRGAGAYICGEETGLIESLEGK 198

Query: 186 KGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           +  PR+KPP FPA +GLY CPT VNNVE++  V  ++  G S Y+  G  NN GT++ SI
Sbjct: 199 RAYPRIKPPYFPAILGLYMCPTIVNNVETLCQVKHVVAMGGSEYAKIGTPNNTGTRIVSI 258

Query: 245 SGHVNYPCTVEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG------- 296
           SG V  P   E  +   T  +LI +  GG+  G   L A+IPGGSS     AG       
Sbjct: 259 SGQVKKPGYYEIEVGKATIGQLINEFAGGLHDGRK-LKAIIPGGSSAKVFKAGEKFKLKK 317

Query: 297 ------------QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES 344
                        M     D+D L   GS  G+ A+IVMD S DI++A+  LS FY HES
Sbjct: 318 KGPDGKDIEQEVDMLDLPYDFDSLMAAGSMSGSGAIIVMDDSVDIVEALANLSEFYAHES 377

Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQG 403
           CGQCTPCREG+ WM + + R+  G  +K++ + L +++ NI  GRTICA G+A +WP+Q 
Sbjct: 378 CGQCTPCREGSLWMSKALHRMTHGEGRKQDAEYLLKIADNIPGGRTICAFGEACSWPVQS 437

Query: 404 LIKNFRPLIEER 415
            +  F+     +
Sbjct: 438 FVGKFKDEFIAK 449


>gi|239905422|ref|YP_002952161.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
 gi|239795286|dbj|BAH74275.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
          Length = 629

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 143/431 (33%), Positives = 227/431 (52%), Gaps = 11/431 (2%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q R +      +    + + ++ G +    K         + + V  SGLRGRGG 
Sbjct: 137 FYQRQTRTVLKECGFIDPDDIREYVAHGGYAAARKAFADMDAKGVCDVVSQSGLRGRGGG 196

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG KW    +V ++   Y++ N DE +PG   DR +M   PH +IEG +IA+  IGA
Sbjct: 197 GFPTGRKWE-AARVQTNPKKYVICNGDEGDPGAFMDRSLMEGNPHCVIEGMMIAARGIGA 255

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETA 177
              +IYVR E+    + ++ AV +  A+G LG N    G    + V  GAGA++CGEETA
Sbjct: 256 DEGYIYVRAEYPLAVKRMRKAVADAEAAGYLGDNLFGSGQSFRLEVMEGAGAFVCGEETA 315

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G P  KPPFPA  GL+  PT +NNVE++A +P I+  GA+ Y   G E + 
Sbjct: 316 LIASIEGLRGMPSPKPPFPAQQGLWRKPTIINNVETLAQIPRIISEGAAAYRALGTETSP 375

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW-----DNLLAVIPGGSSVPC 292
           GTK F+++GHV+    +E     T  E++    GG+             AV  GG S  C
Sbjct: 376 GTKTFALTGHVSNTGLIEVPFGATLREVVLNIGGGVTDDRGFIDEKGFKAVQIGGPSGGC 435

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
                +    +D+D L+ +G+ +G+  ++VM++ T ++        F + ESCG+C  CR
Sbjct: 436 -LTPDLLDLPLDFDSLRSVGAMVGSGGLVVMNQKTCMVSVARFFMEFTQRESCGKCVLCR 494

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           EGT  ++ +++ +++G      + LL  +   ++  ++C LG  A  P+   +K+FR   
Sbjct: 495 EGTKQLLALLDDVIEGRGTAETLSLLETLGHAVQVGSLCGLGKTAPNPVLSTLKHFRKDY 554

Query: 413 EERIDQYHRCN 423
           EE + +  RC+
Sbjct: 555 EEHVFE-KRCS 564


>gi|313499696|gb|ADR61062.1| NADH dehydrogenase (quinone) [Pseudomonas putida BIRD-1]
          Length = 519

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/416 (36%), Positives = 218/416 (52%), Gaps = 8/416 (1%)

Query: 2   LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    SL D  + G +  ++  +      ++  V  SGLRGRGGA F
Sbjct: 98  LKTQQRLLFARAGITRPLSLDDYRANGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 158 PAGIKWRTVRDAGAG-QKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+      L  A      +G LG++ +  G   D+ V  GAGAYICGEETALL
Sbjct: 217 GYIYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT
Sbjct: 277 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  EL+E + GG   G   L A   GG     +P     
Sbjct: 337 MPFQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ LG   V+V D + ++         F   ESCG+CTPCR G+   M
Sbjct: 395 DTPLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGM 454

Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++RL+         D   LL ++   ++  ++CA+G   A+P+   +K F    
Sbjct: 455 EVVDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYFPADF 510


>gi|260427443|ref|ZP_05781422.1| NAD-dependent formate dehydrogenase beta subunit [Citreicella sp.
           SE45]
 gi|260421935|gb|EEX15186.1| NAD-dependent formate dehydrogenase beta subunit [Citreicella sp.
           SE45]
          Length = 506

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 145/413 (35%), Positives = 214/413 (51%), Gaps = 7/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  Q R+     G+    SL    + G    + + L    + I +EVK SGLRGRGGAGF
Sbjct: 91  MKRQTRLTFARCGITDPFSLDQYEALGGLVGLRRALGMTGEQITDEVKLSGLRGRGGAGF 150

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +D   Y+V NADE + GT  DR IM  +P  LIEG  IA    GA  
Sbjct: 151 PTGIKWDTVRMAHAD-RKYIVCNADEGDSGTFADRMIMEGDPFCLIEGMTIAGIGCGATK 209

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            F+Y R E+      ++ A++   A+G+LG +    G   ++ V  GAGAY+CGEET+LL
Sbjct: 210 GFVYTRSEYPDAVAVMRRAIEIARAAGVLGPDVLGSGKAFELEVRVGAGAYVCGEETSLL 269

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G  R KPP PA  G +G PT VNNV S+A VP I  +GA +Y+ FG   ++GT
Sbjct: 270 NSLEGKRGVVRAKPPLPALEGAFGKPTVVNNVISLATVPVIFEKGAEFYANFGLGRSKGT 329

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V +    E +  +   +++E   GG   G   + AV  GG     L   Q  
Sbjct: 330 IPLQIAGNVRHGGLFETAFGMKLGQIVEDLGGGSASG-RAVKAVQVGGPLGAYLGTDQ-F 387

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
                Y+     G+ +G A ++V D + D++        F   ESCG+CTPCR G    +
Sbjct: 388 DTPFGYEEFDGEGALIGHAGLVVFDDTADMLGMARFAMEFCAVESCGKCTPCRIGAVRGV 447

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++R+  G      + LL ++ + ++  ++CALG    +P+   ++ F    
Sbjct: 448 ETLDRIAAG--DAEAVPLLTDLCETMKDGSLCALGGFTPYPVMSALRLFPEEF 498


>gi|170720892|ref|YP_001748580.1| NADH dehydrogenase [Pseudomonas putida W619]
 gi|169758895|gb|ACA72211.1| NADH dehydrogenase (quinone) [Pseudomonas putida W619]
          Length = 519

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 154/416 (37%), Positives = 221/416 (53%), Gaps = 8/416 (1%)

Query: 2   LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    SL D  + G +  +++ +  G   ++  V  SGLRGRGGA F
Sbjct: 98  LKTQQRLLFARAGITRPLSLDDYRAHGGFAGLEQAVALGGAEVVAAVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 158 PAGIKWRTVRDAGAG-QKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADK 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+      L  A      +G LG + +  G   D+ V  GAGAYICGEETALL
Sbjct: 217 GYIYVRSEYPDAIRVLNEAFVIARDAGYLGFDVAGSGQAFDLEVRVGAGAYICGEETALL 276

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT V+NV ++A VPTIL +GA++Y  FG   + GT
Sbjct: 277 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPTILAKGAAFYRDFGMGRSLGT 336

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE +  +T  EL+E + GG   G   L A   GG     +P     
Sbjct: 337 MPFQLAGNIRHGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 394

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    MG+ LG   V+V D + ++         F   ESCG+CTPCR G+   M
Sbjct: 395 DTPLDYEAFAAMGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSIRGM 454

Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++RL+         D   LL ++   ++  ++CA+G   A+P+   +K F    
Sbjct: 455 EVVDRLIASSDLTERHDQALLLRDLCDTMQYGSLCAMGGMTAYPVASALKYFPADF 510


>gi|270307597|ref|YP_003329655.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS]
 gi|270153489|gb|ACZ61327.1| [Fe] hydrogenase, HymB subunit [Dehalococcoides sp. VS]
          Length = 417

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 153/418 (36%), Positives = 227/418 (54%), Gaps = 9/418 (2%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + D   I  +L       +   ++ G +  + K L    + +I EVK S L GRGGA F 
Sbjct: 1   MKDVKIITRHLNTANSADIDVYLADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFP 60

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K  +  P Y+V NA E EPGT KDR I++++PH ++EG +IA++A+G    
Sbjct: 61  TGLKWELTRKEKA-NPKYIVCNASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQG 119

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FI+ R  +  E E  Q A+D+    G LG N     + +DI  +  AGAYICGEETAL E
Sbjct: 120 FIHAREVYTEEIELFQKAIDQATERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFE 179

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +G P  +PP+P  VGL   PTTVNNVE++  VP I+  GA W++  G  +  GTK
Sbjct: 180 SLEGHRGIPAARPPYPVQVGLMDKPTTVNNVETLCNVPAIINNGADWFASIGHPDYPGTK 239

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SG+V  P   E  +     +L+E   GG+ G      AV+PGG S   L       
Sbjct: 240 LFCLSGNVKEPGVFEMPLGTNLKDLLE-AGGGVDG---KFKAVLPGGISSSLLTET---D 292

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+  L + G+ LG+ AVIV++  T ++     ++ F+  E CG+C+ CREGT     
Sbjct: 293 ISLDFKTLAKAGTMLGSGAVIVINSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAE 352

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++ R  +G   + E++ L E+ + ++    C LG  A       I+NF+     ++ +
Sbjct: 353 ILSRFSRGQGNRNELEWLLELHEVMKDTASCGLGQVALNVAASAIRNFKGEFLAQVRK 410


>gi|91784827|ref|YP_560033.1| NAD-dependent formate dehydrogenase, beta subunit [Burkholderia
           xenovorans LB400]
 gi|91688781|gb|ABE31981.1| formate dehydrogenase beta subunit [Burkholderia xenovorans LB400]
          Length = 521

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 150/414 (36%), Positives = 224/414 (54%), Gaps = 6/414 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + + + L+   D     +  SGLRGRGGA F
Sbjct: 98  LKKQQRLTFARIGITDPLSIDDYIAHGGLEGLRQALQTDGDAACEALIESGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P+ LIEG +IA    GA  
Sbjct: 158 PAGIKWRTVRGAKA-AQKYIVCNADEGDSGTFSDRLVMESDPYVLIEGMIIAGVVTGATV 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETAL 178
             IYVR E+     +L+AA+ +  A+G LG +      +  ++ V  GAGAY+CGEETAL
Sbjct: 217 GHIYVRSEYPHSIATLEAAIAKARAAGWLGDSVLGSTEHRFELFVAKGAGAYVCGEETAL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEGK+G  R KPP PA VGL+G PT +NNV ++A VP I  RGA++Y  FG   +RG
Sbjct: 277 LESLEGKRGIVRAKPPVPALVGLFGQPTVINNVITLATVPIIFARGAAFYKDFGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G+V     VE +  +T  EL+ ++ GG   G     AV  GG     LP  Q 
Sbjct: 337 TLPFQLAGNVKQGGLVELAFGVTLRELLYEYGGGTASGRPA-RAVQVGGPLGTYLPESQ- 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDY+    +G+ +G   ++V D ++++ +       F   ESCG+CTPCR G+   
Sbjct: 395 WDIPMDYEAYAAVGAVVGHGGLVVHDDTSNLAELAQYAMHFCALESCGKCTPCRIGSTRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + V+ R+  G    R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 455 VEVIGRIRNGDTSTRQVQLLRDLCDTMVSGSLCAMGGMTPFPVLSALDHFPEDF 508


>gi|226227790|ref|YP_002761896.1| formate dehydrogenase beta subunit [Gemmatimonas aurantiaca T-27]
 gi|226090981|dbj|BAH39426.1| formate dehydrogenase beta subunit [Gemmatimonas aurantiaca T-27]
          Length = 520

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 147/409 (35%), Positives = 222/409 (54%), Gaps = 5/409 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L +Q R+ F  +  +   SL D  + G    +++ +      I+ E+ ASGLRGRGGA F
Sbjct: 96  LAEQVRLTFARIGRIDPLSLDDYRTAGGLLGLERAIGMDSAGIVREITASGLRGRGGAAF 155

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P  LIEG  IA+ A+GA  
Sbjct: 156 PAGIKWETVRNARAP-QKYVVCNADEGDSGTFADRLLMEADPFQLIEGMTIAALAVGATQ 214

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+    +    A+    ++G+LG++     +  DI +  G GAYICGEETALL
Sbjct: 215 GYVYLRSEYPYAAQIFGEALARARSAGMLGASVCGSSHAFDITLRIGGGAYICGEETALL 274

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV + A    +L RGA  Y+  G + + GT
Sbjct: 275 ESLEGKRGVVRAKPPLPALQGLFGQPTVINNVLTFAAATDVLARGAQHYASHGLDRSTGT 334

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F + G++     VE    IT  +L+E+  GG       L A+  GG     LPA Q  
Sbjct: 335 MPFQLGGNIQRGGLVELPFGITLRDLVERFGGG-SYSGRALRAIQVGGPLGAYLPASQ-W 392

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              + Y+    +G+ LG   ++  D + D+         F  HESCG+CTPCR G+   +
Sbjct: 393 DTPLTYEHFAAIGAMLGHGGIVAFDDTVDMAAQAEFAMAFCAHESCGKCTPCRIGSTRGV 452

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
            V++RL +    + + +LL E+ + +E  ++CALG     P++ ++K+F
Sbjct: 453 EVIQRLRRREQVRDQWNLLEELCETMELGSLCALGGLTPMPVRSVMKHF 501


>gi|26988908|ref|NP_744333.1| NADH dehydrogenase (quinone) [Pseudomonas putida KT2440]
 gi|24983719|gb|AAN67797.1|AE016411_2 formate dehydrogenase, beta subunit, putative [Pseudomonas putida
           KT2440]
          Length = 525

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 151/416 (36%), Positives = 218/416 (52%), Gaps = 8/416 (1%)

Query: 2   LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    SL D  + G +  ++  +      ++  V  SGLRGRGGA F
Sbjct: 104 LKTQQRLLFARAGITRPLSLDDYRANGGFAGLEAAVALDGAEVVAAVLDSGLRGRGGAAF 163

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 164 PAGIKWRTVRDAGAG-QKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGADK 222

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+      L  A      +G LG++ +  G   D+ V  GAGAYICGEETALL
Sbjct: 223 GYIYVRSEYPDAIRVLDQAFAIARDAGYLGADVAGSGQAFDLEVRVGAGAYICGEETALL 282

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT
Sbjct: 283 ESIEGKRGIVRAKPPLPALQGLFGLPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGT 342

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE +  +T  EL+E + GG   G   L A   GG     +P     
Sbjct: 343 MPFQLAGNIRQGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPSH-F 400

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ LG   V+V D + ++         F   ESCG+CTPCR G+   M
Sbjct: 401 DTPLDYEAFAAVGAMLGHGGVVVADDTLNMASMARFALQFCAEESCGKCTPCRIGSTRGM 460

Query: 360 RVMERLVKGIAQKREID---LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++RL+         D   LL ++   ++  ++CA+G   A+P+   +K F    
Sbjct: 461 EVVDRLIASSDITERHDQALLLRDLCDTLQYGSLCAMGGMTAYPVASALKYFPADF 516


>gi|124268893|ref|YP_001022897.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
 gi|124261668|gb|ABM96662.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
          Length = 520

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 148/413 (35%), Positives = 219/413 (53%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +      SL+D  +   W  + + L      +++EV  SGLRGRGGA F
Sbjct: 101 LAKQERLCFARMGLTDPLSLADYEAHEGWAGLRRALAMPDAAVVDEVLQSGLRGRGGAAF 160

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    S    Y+V NADE + GT  DR  M  +P+ LIEG  IA+ A+GA  
Sbjct: 161 PTGIKWKTVMNTPS-AQKYIVCNADEGDSGTYSDRMTMEGDPYMLIEGMTIAALAVGATR 219

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+     +L  A+    A+G LGS+    G    + V   AGAY+CGEETALL
Sbjct: 220 GYVYVRSEYPHAIATLNDAIARAEAAGFLGSDVLGSGRAFHLQVRKAAGAYVCGEETALL 279

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV S A VP IL RGA+ Y  +G   + GT
Sbjct: 280 ESLEGKRGIVRAKPPLPAIEGLFGQPTVINNVISFASVPLILARGAAHYRDYGVGRSMGT 339

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V     VE++  +T  EL+    GG   G   + AV  GG     +P  +  
Sbjct: 340 LPIQLAGNVKRGGLVEKAFGVTLRELLYDFGGGTASGRP-IKAVQVGGPLGTYVPESK-W 397

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+     G  +G   ++V D + D+ K       F   ESCG+CTPCR G+   +
Sbjct: 398 DVPLDYEAYAAFGGVVGHGGIVVHDDTADMAKLARYAMEFCAIESCGKCTPCRIGSTRGV 457

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+   + +  ++ LL ++   +   ++CA+G    +P+   + ++    
Sbjct: 458 EVIDRITANVNRPAQVKLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHYPEDF 510


>gi|85707197|ref|ZP_01038283.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Roseovarius sp. 217]
 gi|85668251|gb|EAQ23126.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Roseovarius sp. 217]
          Length = 502

 Score =  415 bits (1068), Expect = e-114,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 220/413 (53%), Gaps = 7/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  Q R+ F  +  +   +++D  + G    + + +E     I+ EV  SGLRGRGGAGF
Sbjct: 87  MKRQTRLTFARVGVVDPLNITDYEAHGGLVGLRRAIEMDGAGIVAEVTQSGLRGRGGAGF 146

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  + +  +    Y+V NADE + GT  DR +M  +P TLIEG  IA   +GA  
Sbjct: 147 PTGIKWKTVFEAQAP-QKYIVCNADEGDSGTFADRMVMEGDPFTLIEGMTIAGLGVGATR 205

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+      ++ AV+   A+G+LG++    G   D+ +  GAGAY+CGEET+LL
Sbjct: 206 GYVYLRSEYPDAIRVMRRAVEIARAAGVLGADVLGSGRAFDMEIRVGAGAYVCGEETSLL 265

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G  R KPP PA  G  G PT VNNV S+A VP I  +GA  Y+ FG   +RGT
Sbjct: 266 NSLEGKRGVVRAKPPLPALEGFLGRPTVVNNVISLATVPVIFEKGAQHYADFGLGRSRGT 325

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V      E +  IT DE++    GG   G   + AV  GG     +P     
Sbjct: 326 VTLQIAGNVARGGLFETAFGITLDEVVNDLGGGTASGRP-VKAVQVGGPLGSYIPVDN-F 383

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A + Y+ L   G  LG A ++V D + D+++       F   ESCG+CTPCR G    +
Sbjct: 384 DAALGYEELDARGGLLGHAGLVVFDDAADMLQMARFAMEFCAVESCGKCTPCRIGAVRGV 443

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++R+  G      I LL ++ + ++  ++CALG     P+   + +F    
Sbjct: 444 ETIDRIAAGDGSA--IPLLTDLCETMKDGSLCALGGFTPLPVMSALTHFPNDF 494


>gi|148262412|ref|YP_001229118.1| NADH dehydrogenase (quinone) [Geobacter uraniireducens Rf4]
 gi|146395912|gb|ABQ24545.1| NADH dehydrogenase subunit F [Geobacter uraniireducens Rf4]
          Length = 433

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/409 (41%), Positives = 237/409 (57%), Gaps = 8/409 (1%)

Query: 19  SLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + ++    G +D + K L E   + +   V  + LRGRGGAGF TG KWSF+P+     P
Sbjct: 25  TFTEYCGEGGFDALKKALKELSPNDVQQLVIDANLRGRGGAGFPTGKKWSFVPRDLPG-P 83

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            +L+ N DE EPGT KDR ++   P +L+EG ++A +AIG   AFI++R  +     +++
Sbjct: 84  RWLICNCDEMEPGTYKDRVLLEANPWSLVEGIILACYAIGVSHAFIFIRRGYETAAGNVR 143

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A+ E   +GL+G N    G+  DI +H  AG YICGEETAL+ +LEGK+  PR KPPFP
Sbjct: 144 RAIAEAKGAGLIGDNILGSGFSCDIDLHVSAGRYICGEETALMNALEGKRANPRSKPPFP 203

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR-ENNRGTKLFSISGHVNYPCTVE 255
           A  GL+G PT VNNVE++A +P I+  G +W+ G  +     GTKLF ISGHV     +E
Sbjct: 204 AVKGLWGGPTVVNNVETLANIPYIIANGPAWFKGLAKIPEAAGTKLFCISGHVQNTVCME 263

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             + +   ++I+  CGG+        A IPGG+S P       RG  MD+D + + GS L
Sbjct: 264 LPLGMPLGDIIDGPCGGM-LPGKRFKACIPGGASTPFFTEEH-RGVPMDFDTVAKAGSRL 321

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  +IV D  T ++ A   L  FY  ESCG CTPCREG  +++ V+ RL  G  +  +I
Sbjct: 322 GTGGIIVFDEETCLVGATLNLVKFYARESCGWCTPCREGLPFVVDVLARLEAGKGETEDI 381

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           D+L E  K +     CAL   A  P++GL++ F   I E I +  RC F
Sbjct: 382 DILREHVKYL-NLAFCALAPGAMGPVEGLLRLFEEEIREHIIK-RRCPF 428


>gi|78065617|ref|YP_368386.1| NADH dehydrogenase (quinone) [Burkholderia sp. 383]
 gi|77966362|gb|ABB07742.1| formate dehydrogenase beta subunit [Burkholderia sp. 383]
          Length = 525

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 142/413 (34%), Positives = 217/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +       +  +L    D +   +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLQYEGLAGLKNVLALDGDAVCEALIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQASA-TQKYIVCNADEGDSGTFSDRLIMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG +     +  ++ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIVRAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GLYG PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLYGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ +   VE S  +T  EL+    GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRHGGLVELSFGVTLRELLFDFGGGTASGRPA-RAAQVGGPLGTYLP-DHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYSMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R++ LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRDGDTSERQVTLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|170740591|ref|YP_001769246.1| NADH dehydrogenase (quinone) [Methylobacterium sp. 4-46]
 gi|168194865|gb|ACA16812.1| NADH dehydrogenase (quinone) [Methylobacterium sp. 4-46]
          Length = 519

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 158/416 (37%), Positives = 222/416 (53%), Gaps = 5/416 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   S++D  +   +  + + LE G    ++ V  SGLRGRGGAG
Sbjct: 98  FLARQQRLTFHRCGVIDPVSVADYRAHRGYRGLARALEIGAPATVDAVTLSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW+ + +  +D   Y+V NADE + GT  DR +M  +P TLIEG  IA  A+GA 
Sbjct: 158 FPTGIKWNTVMRAEAD-RKYVVCNADEGDSGTFADRMLMEGDPFTLIEGMTIAGVAVGAA 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY+R E+    E+L+AA+     +G+LG N    G D  + V  GAGAYICGEET+L
Sbjct: 217 RGYIYLRSEYPNACETLRAAIAAGERAGVLGRNVMGSGRDFHLEVRLGAGAYICGEETSL 276

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG++G  R KPP PA  GL+G PT VNNV S A VP IL  G   Y+ +G   +RG
Sbjct: 277 LESLEGRRGIVRAKPPIPALKGLFGRPTLVNNVLSFAAVPWILDHGGEAYAAYGMGRSRG 336

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G+V     +E +  IT  E+IE   GG R G   + A   GG      P G +
Sbjct: 337 TLPIQLAGNVRQGGLIETAFGITLREVIEDFGGGTRSGRP-VRAAQVGGPLGAYFPEG-L 394

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDY+        +G   V+V D S D+ +       F   ESCG+CTPCR G    
Sbjct: 395 FDTPMDYEAFAARKGLVGHGGVVVFDDSVDMARQARFAFEFCAVESCGKCTPCRIGAVRG 454

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
              M+RL+ G A    + L+ ++ + +   ++CA+G     P+   I +F    + 
Sbjct: 455 RETMDRLLAGEAPAEPLRLIEDLCEVMTDGSLCAMGGLTPVPVMSAITHFPEDFDR 510


>gi|3724144|emb|CAA11234.1| NAD-dependent formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
          Length = 520

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 149/414 (35%), Positives = 219/414 (52%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q+R+     G+    SL D  +   +  +++ L      I+ EV  SGLRGRGGA 
Sbjct: 100 FLKQQERLTFARVGITDPLSLDDYRAHEGFAGLERALAMQPAEIVQEVTDSGLRGRGGAA 159

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    S    Y+V NADE + GT  DR +M  +P  LIEG  IA+ A+GA 
Sbjct: 160 FPTGIKWKTVLGAQS-AVKYIVCNADEGDSGTFSDRMVMEDDPFMLIEGMTIAALAVGAE 218

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             +IY R E+      L++A+    A+G LG +    G    + V  GAGAY+CGEETAL
Sbjct: 219 QGYIYCRSEYPHAIAVLESAIGIANAAGWLGDDIRGSGKRFHLEVRKGAGAYVCGEETAL 278

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LESLEG++G  R KPP PA  GL+G PT +NNV S+A V     R A +Y  +G   +RG
Sbjct: 279 LESLEGRRGVVRAKPPLPALQGLFGKPTVINNVISLATVAGESWRAAEYYRDYGMGRSRG 338

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T  F ++G++     VE++  +T  EL+  + GG R G   + AV  GG     LP  + 
Sbjct: 339 TLPFQLAGNIKQGGLVEKAFGVTLRELLVDYGGGTRSG-RAIRAVQVGGPLGAYLPESR- 396

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +DY+     G  +G   ++V D + D+ KA      F   ESCG+CTPCR G+   
Sbjct: 397 FDVPLDYEAYAAFGGVVGHGGIVVFDETVDMAKAGPYAMEFCAIESCGKCTPCRIGSTRG 456

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + VM+R++ G    + + L+ ++   +   ++CA+G    +P+   +  F    
Sbjct: 457 VEVMDRIIAGEQPVKHVALVRDLCDTMLNGSLCAMGGMTPYPVLSALNEFPEDF 510


>gi|226227804|ref|YP_002761910.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27]
 gi|226090995|dbj|BAH39440.1| NADH-quinone oxidoreductase chain F [Gemmatimonas aurantiaca T-27]
          Length = 439

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 172/404 (42%), Positives = 245/404 (60%), Gaps = 4/404 (0%)

Query: 17  GKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
             SL+   +RG + ++ K L       +  EV ASGL G GGA F  G KW  + K+   
Sbjct: 16  SHSLAAYKARGGYQSLQKALTSMQPTDVTKEVAASGLLGHGGAAFPAGRKWG-VIKLTDG 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            PHY+ +NADE EPGT KDR ++ H PH  IEG ++AS+AI    AFIY+RGEF      
Sbjct: 75  EPHYVCMNADEGEPGTFKDRWLLEHVPHLCIEGLILASYAIMGRHAFIYIRGEFDLPFRR 134

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L+ A++E YA+GLLG N    GY +DI+++ GAG+Y+CGE +A+L SLEGKKG PR +PP
Sbjct: 135 LRDAIEEAYAAGLLGENILGTGYSLDIVLYRGAGSYVCGEASAMLASLEGKKGWPRNRPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
                GLY  PT VNNVE++A +P I+  G   +   G   + GT++ SISGH+  P   
Sbjct: 195 RLTVKGLYQRPTVVNNVETLANIPAIIGEGGETFRKVGLPKSPGTQMISISGHLVRPGVY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E     ++++ I + CGGI  G   L  VIPGG S   L A +++G  +D++     GS 
Sbjct: 255 EIEYGYSWEKFIYEDCGGI-LGGRALKCVIPGGVSTKILDANELKGRTLDHNSALAAGSQ 313

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+  +IV+   T +++    +  FY HESCGQCTPCREG GWM R+++R+V+G  +  +
Sbjct: 314 IGSGGMIVIAEGTCMVRVARVIQRFYHHESCGQCTPCREGMGWMERILDRIVRGEGRPED 373

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ID LY +S   +G TIC+LGD+A +    ++ ++R   E  I  
Sbjct: 374 IDRLYHISTANDGTTICSLGDSAGYACSAILDHYRDEFEHFITH 417


>gi|221065417|ref|ZP_03541522.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Comamonas testosteroni KF-1]
 gi|220710440|gb|EED65808.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Comamonas testosteroni KF-1]
          Length = 717

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 142/415 (34%), Positives = 221/415 (53%), Gaps = 7/415 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+     G+    SL D  + G W  +        + I+ +V  SGLRGRGGA F
Sbjct: 295 LARQERLTFARVGIVDPLSLQDYEAHGGWQGLRAAAAMAPEAIVQQVLESGLRGRGGAAF 354

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+  NADE + GT  DR +M  +P  LIEG  IA+ A+GA  
Sbjct: 355 PAGIKWKTVAAAPAP-QKYIACNADEGDSGTFADRLLMEGDPFCLIEGMAIAALAVGATQ 413

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+      L  A+    A+G LG+N +  G    + V  GAG+Y+CGEETA+L
Sbjct: 414 GYVYVRSEYPHAIAVLNEAIARASAAGWLGNNVAGSGKAFYLQVRKGAGSYVCGEETAML 473

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G  R KPP PA  GL+G PT +NNV ++A VP IL RGA++Y G+G   +RGT
Sbjct: 474 ESIEGKRGIVRAKPPLPAIEGLFGRPTVINNVITLATVPIILARGAAFYQGYGMGRSRGT 533

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE++  +T  EL++   GG   G   + A+  GG     +      
Sbjct: 534 LPFQLAGNIAQGGLVEKAFGLTLRELVQDFGGGTASGRP-VKAIQVGGPLGSYVAPEDWD 592

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+     G+ +G   ++V D   D+ +       F   ESCG+CTPCR G+   +
Sbjct: 593 D-PLDYETYAAKGNVVGHGGLVVHDDGADMAQLARYAMEFCAIESCGKCTPCRIGSTRGV 651

Query: 360 RVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+ +  G      + LL  +   ++  ++CA+G    +P++  ++++    
Sbjct: 652 EVIDRITRQGGAEHAANVALLESLCDTMQHGSLCAMGGMTPYPVRSALQHYPQDF 706


>gi|260576446|ref|ZP_05844436.1| NADH dehydrogenase (quinone) [Rhodobacter sp. SW2]
 gi|259021329|gb|EEW24635.1| NADH dehydrogenase (quinone) [Rhodobacter sp. SW2]
          Length = 509

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 150/410 (36%), Positives = 211/410 (51%), Gaps = 7/410 (1%)

Query: 5   QDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q R+ F         SL++  + G    + + L      I+ EV ASGLRGRGGAGF TG
Sbjct: 97  QTRLTFARCGVTDPLSLAEFQAHGGLAGLRRALAMVPADIVAEVTASGLRGRGGAGFPTG 156

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW  + +  +    Y+V NADE + GT  DR IM  +P  LIEG  IA  A+GA   ++
Sbjct: 157 IKWKTVAEAGAG-QKYIVCNADEGDSGTFADRMIMEGDPFLLIEGMTIAGLAVGATKGYV 215

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+      +  AV    A GLLG++    G   DI +  GAGAY+CGEET+LL SL
Sbjct: 216 YIRSEYPDAIAVMTEAVVLARAEGLLGASVLGSGKAFDIEIRTGAGAYVCGEETSLLNSL 275

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G  R KPP PA  G  G PT VNNV S+  VP IL +GA +Y  FG   +RGT   
Sbjct: 276 EGKRGVVRAKPPLPALHGFLGRPTVVNNVISLTSVPIILDKGAGYYRDFGLGRSRGTIPL 335

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            I+G+V +    E +  +T  E+++   GG   G   + AV  GG      P   +    
Sbjct: 336 QIAGNVRFGGLFEVAFGLTLGEIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRE-LFDTP 393

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
             Y+     G  +G A ++V D + D++        F   ESCG+CTPCR G    M  +
Sbjct: 394 FCYEEYAGKGGLVGHAGLVVFDDTADMLHQARFAMEFCAIESCGKCTPCRIGAVRGMETL 453

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +R+  G      I LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 454 DRI--GRGDTAAIPLLSDLCDTMKAGSLCALGGFTPYPVMSALTHFPDDF 501


>gi|332559554|ref|ZP_08413876.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Rhodobacter sphaeroides WS8N]
 gi|332277266|gb|EGJ22581.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Rhodobacter sphaeroides WS8N]
          Length = 509

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/410 (35%), Positives = 214/410 (52%), Gaps = 7/410 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q R+     G+     L +  + G ++ + + +   R  I+ EV  SGLRGRGGAGF TG
Sbjct: 97  QTRLTFARCGITDPLCLEEYEAHGGFEGLHRAIAMSRAEILQEVIDSGLRGRGGAGFPTG 156

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW  + +  +    Y+V NADE + GT  DR IM  +P TLIEG  IA  A GA   ++
Sbjct: 157 IKWKTVSEAEA-AQKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYV 215

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    E +  AV    A GLLG +    G   D+ +  GAGAY+CGEET+LL SL
Sbjct: 216 YMRSEYPDAVEVMGEAVRIARAHGLLGPSVIGSGRAFDMEIRVGAGAYVCGEETSLLNSL 275

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G  R KPP PA  G  G PT VNNV S+A +P I ++GA++Y  FG   +RGT   
Sbjct: 276 EGKRGVVRAKPPLPALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPL 335

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            I+G+V      E +  ++  ++++   GG   G   + AV  GG      P   +    
Sbjct: 336 QIAGNVKRGGLFEIAFGMSLGQIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-LFDTP 393

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
             Y+        +G A ++V D + D++K       F   ESCG+CTPCR G    M  +
Sbjct: 394 FCYEEFAGAEGLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETV 453

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +R+ +G      I LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 454 DRIARG--DAAAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHFPDDF 501


>gi|104780976|ref|YP_607474.1| formate dehydrogenase subunit beta [Pseudomonas entomophila L48]
 gi|95109963|emb|CAK14668.1| putative formate dehydrogenase, beta subunit [Pseudomonas
           entomophila L48]
          Length = 517

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 149/415 (35%), Positives = 218/415 (52%), Gaps = 8/415 (1%)

Query: 2   LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    SL D  + G ++ + +      D ++  V  SGLRGRGGA F
Sbjct: 98  LKTQQRLLFARAGITRPLSLDDYHANGGFEGLRQATLMEGDEVVAAVLDSGLRGRGGAAF 157

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P  LIEG +IA  A+GA  
Sbjct: 158 PAGIKWRTVRQAQA-VRKYVVCNADEGDSGTFADRMLMEGDPFLLIEGMIIAGLAVGASH 216

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            +IYVR E+      L  A+     +G L   +  G    + V  GAGAYICGEETALLE
Sbjct: 217 GYIYVRSEYPDAIRVLNEAILLAREAGYL-DVAGNGVAFHLEVRVGAGAYICGEETALLE 275

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G  R KPP PA  GL+G PT V+NV ++A VP IL +GA++Y  FG   + GT 
Sbjct: 276 SIEGKRGIVRAKPPLPALEGLFGQPTLVHNVLTLASVPIILAKGAAFYRDFGMGRSLGTL 335

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            F ++G+V     VE +  +T  EL+E + GG   G   L A   GG     +P      
Sbjct: 336 PFQLAGNVLRGGLVERAFGLTLRELVEGYGGGTASGRP-LKAAQVGGPLGAWVPPTN-FD 393

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+    MG+ LG   V+V D + D+         F   ESCG+CTPCR G+   + 
Sbjct: 394 TPLDYEAFAAMGAMLGHGGVVVADDTLDMAGMARFALQFCAEESCGKCTPCRIGSTRGLE 453

Query: 361 VMERLVKGI---AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           V++RL+       ++ +  LL ++   ++  ++CA+G    +P+   + +F    
Sbjct: 454 VIDRLIASTDPAYRQGQAGLLRDLCDTMQYGSLCAMGGMTPYPVVSALDHFPADF 508


>gi|221640574|ref|YP_002526836.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131]
 gi|221161355|gb|ACM02335.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131]
          Length = 509

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/410 (35%), Positives = 214/410 (52%), Gaps = 7/410 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q R+     G+     L +  + G ++ + + +   R  I+ EV  SGLRGRGGAGF TG
Sbjct: 97  QTRLTFARCGITDPLCLEEYEAHGGFEGLHRAIAMSRTEILQEVIDSGLRGRGGAGFPTG 156

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW  + +  +    Y+V NADE + GT  DR IM  +P TLIEG  IA  A GA   ++
Sbjct: 157 IKWKTVSEAEA-AQKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYV 215

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    E +  AV    A GLLG +    G   D+ V  GAGAY+CGEET+LL SL
Sbjct: 216 YMRSEYPDAVEVMGEAVRIARAHGLLGPSVMGSGRAFDMEVRVGAGAYVCGEETSLLNSL 275

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G  R KPP PA  G  G PT VNNV S+A +P I ++GA++Y  FG   +RGT   
Sbjct: 276 EGKRGVVRAKPPLPALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPL 335

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            I+G+V      E +  ++  ++++   GG   G   + AV  GG      P   +    
Sbjct: 336 QIAGNVKRGGLFEIAFGMSLGQIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-LFDTP 393

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
             Y+        +G A ++V D + D++K       F   ESCG+CTPCR G    +  +
Sbjct: 394 FCYEEFAGAEGLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGIETV 453

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +R+ +G      I LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 454 DRIARG--DTAAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHFPDDF 501


>gi|21224862|ref|NP_630641.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|4007678|emb|CAA22364.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor
           A3(2)]
          Length = 646

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 156/403 (38%), Positives = 219/403 (54%), Gaps = 10/403 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +   +      SL D  + G +  + +    G   +I EV  +GL GRGGA F TG KW 
Sbjct: 246 LLHRIGTTDPTSLDDYRAHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQ 305

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                  D PHYLV NADESEPGT KDR +M  +P+ L+E   IA++A GAH  ++Y+RG
Sbjct: 306 ATA-AQPDHPHYLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRG 364

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+ R    L  A+++    GLLG +    GY  DI +  GAGAYICGEETAL  S+EG++
Sbjct: 365 EYPRALARLTHAIEQARTRGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGRR 424

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR KPPFP   GL+G PT  NNVE++  V  IL  GA  Y+  G   + G KLF +SG
Sbjct: 425 GEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILTMGAEAYAAIGTPTSTGPKLFCVSG 484

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E     T  EL+           DNL AV+ GG++   +   ++    + ++
Sbjct: 485 TVARPGVYELPFGATLGELLALAG-----VRDNLRAVLLGGAAGGFVRPDEL-DIPLTFE 538

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G +E G+ LG+  V+  D +  + + + R++ F++ ESCGQC PCR GT      + R+ 
Sbjct: 539 GTREAGTTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIA 598

Query: 367 K--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
              G A   +I LL EV + +   +IC LG  A   ++  I  
Sbjct: 599 DRTGAAAADDIALLREVGRAMRDASICGLGQTAWNAVESAIDR 641


>gi|302557264|ref|ZP_07309606.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302474882|gb|EFL37975.1| formate dehydrogenase, beta subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 641

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/395 (38%), Positives = 215/395 (54%), Gaps = 10/395 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               L D  + G +  + +    G   +I EV  SGL GRGGA F TG KW        D
Sbjct: 249 DPADLDDYRAHGGYTALRRAFALGPAGVIREVTDSGLTGRGGAAFPTGRKWQATA-SQPD 307

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            PHYLV NADESEPGT KDR +M  +P+ L+E   IA++A GAH  ++Y+RGE+ R    
Sbjct: 308 HPHYLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALRR 367

Query: 136 LQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           ++ A+ +  A GLLG +    GY  DI +  GAGAYICGEETAL  S+EG +G+PR KPP
Sbjct: 368 MEHAIGQGRARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGHRGEPRSKPP 427

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FP   GL+G PT  NNVE++  V  +L  GA  Y+  G   + G KLF +SG V  P   
Sbjct: 428 FPVEKGLFGRPTAENNVETLVNVLPVLTLGAQAYAAIGTGRSTGPKLFCVSGSVARPGVY 487

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E     T  EL+           DNL AV+ GG++   +   ++    + ++G +E G+ 
Sbjct: 488 ELPFGATLGELLRLAG-----VRDNLRAVLLGGAAGGFVRPDEL-DIPLTFEGTREAGTT 541

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK--GIAQK 372
           LG+  V+  D +  + + + R++ F++ ESCGQC PCR GT      + R+    G    
Sbjct: 542 LGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALRRIADRTGDGAA 601

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
            +I LL EV + +   +IC LG  A   ++  I  
Sbjct: 602 DDIALLREVGRTMRDASICGLGQTAWNAVESAIDR 636


>gi|254167372|ref|ZP_04874224.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Aciduliprofundum boonei T469]
 gi|197623635|gb|EDY36198.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Aciduliprofundum boonei T469]
          Length = 404

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/399 (38%), Positives = 235/399 (58%), Gaps = 7/399 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              ++ D +++G +  + K LE G+D II EV+ SGL GRGGA F TG+K  F+ K  S 
Sbjct: 6   DASNVEDYLAQGGFKALRKALEYGQDEIIREVEISGLLGRGGAAFPTGLKMKFVRKEKS- 64

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P Y+V NADE EPGT KDR +M   P+ ++EG +I+ +AI A   F Y+R E+    + 
Sbjct: 65  TPKYIVANADEGEPGTFKDRVLMERNPYQILEGMIISGYAIDAKKGFFYIRYEYKEIAKD 124

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           ++  ++E    G+LG N     +  DI +  GAGAY+CGEETAL+ES+EGK+G PR+KPP
Sbjct: 125 IKRKIEELRRLGILGPNIYGPKFSFDIELVVGAGAYVCGEETALMESIEGKRGYPRIKPP 184

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           +PA  GL+G PT +NNVE++A +P ++  G + YS  G+E   G KLFS+SG V  P   
Sbjct: 185 YPAQYGLWGKPTLINNVETLANIPIVMSMGGANYSKLGKEGCTGPKLFSVSGFVKNPGVY 244

Query: 255 EESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           E ++   T  E+IE   G        +  ++ GG +   +   +     + +   KE G 
Sbjct: 245 EANLGDKTIGEMIELAGG----AEGKIKGIMLGGGAAGFILNEEHLDLPLCFKDAKERGL 300

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT  +IV + S  +   +  +S F++HESCGQC PCR GT  M  ++E++V+G  +K 
Sbjct: 301 FLGTGNIIVFNESVGLWDVLLNISKFFEHESCGQCFPCRYGTKRMREIIEKIVRGDGRKE 360

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +I+ L   ++ ++  ++C LG +A    +  +KNF   +
Sbjct: 361 DIEKLNATARAMKIASLCPLGASAMLAYESAMKNFHEEL 399


>gi|77464660|ref|YP_354164.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Rhodobacter sphaeroides 2.4.1]
 gi|77389078|gb|ABA80263.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Rhodobacter sphaeroides 2.4.1]
          Length = 509

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/410 (35%), Positives = 214/410 (52%), Gaps = 7/410 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q R+     G+     L +  + G ++ + + +   R  I+ EV  SGLRGRGGAGF TG
Sbjct: 97  QTRLTFARCGITDPLCLEEYEAHGGFEGLHRAIAMSRAEILQEVIDSGLRGRGGAGFPTG 156

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW  + +  +    Y+V NADE + GT  DR IM  +P TLIEG  IA  A GA   ++
Sbjct: 157 IKWKTVSEAEA-AQKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYV 215

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    E +  AV    A GLLG +    G   D+ +  GAGAY+CGEET+LL SL
Sbjct: 216 YMRSEYPDAVEVMGEAVRIARAHGLLGPSVMGSGRAFDMEIRVGAGAYVCGEETSLLNSL 275

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G  R KPP PA  G  G PT VNNV S+A +P I ++GA++Y  FG   +RGT   
Sbjct: 276 EGKRGVVRAKPPLPALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPL 335

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            I+G+V      E +  ++  ++++   GG   G   + AV  GG      P   +    
Sbjct: 336 QIAGNVKRGGLFEIAFGMSLGQIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-LFDTP 393

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
             Y+        +G A ++V D + D++K       F   ESCG+CTPCR G    M  +
Sbjct: 394 FCYEEFAGAEGLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETV 453

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +R+ +G      I LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 454 DRIARG--DAAAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHFPDDF 501


>gi|225850513|ref|YP_002730747.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit
           f) (ndh-1 subunit f) [Persephonella marina EX-H1]
 gi|225646692|gb|ACO04878.1| NADH-quinone oxidoreductase subunit f (nadhdehydrogenase i subunit
           f) (ndh-1 subunit f) [Persephonella marina EX-H1]
          Length = 432

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 159/408 (38%), Positives = 229/408 (56%), Gaps = 14/408 (3%)

Query: 19  SLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
            + + ++ G +  + K LE    + I+  V+ S LRGRGGAGF T  KW F        P
Sbjct: 33  DIEEYVTTGGYSALRKALERLKPEDIVVLVEESTLRGRGGAGFPTARKWRFALMNPE--P 90

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ N DESEPGT KDR I+  +PH L+EG +IA +A+GA   +IY+RGE+      L+
Sbjct: 91  RYLICNCDESEPGTFKDRIIVERDPHLLLEGMIIAGYALGAKEGYIYIRGEYPAGYLILE 150

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E  + G LG N     +  DI V+ GAGAYICGEETAL+ESLEGK+G PRL+PP+P
Sbjct: 151 NAIEEAKSYGFLGENILGTNFSFDIKVYRGAGAYICGEETALIESLEGKRGHPRLRPPYP 210

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VG+YG PT VNNVE+++ +P I+     ++   G     G KLF ISG V  P   E 
Sbjct: 211 AQVGIYGKPTVVNNVETLSNIPIIVTY-EQYFMNIGPSGFYGPKLFPISGKVEKPGVYEA 269

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +M IT  ELI+   G          AV  G   V    + +     MDY          G
Sbjct: 270 TMDITLRELIDMAGG--IKNGKRFKAVFSGALGVY---SEKDLDMPMDYSP----KGFGG 320

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T   IV+D    II ++  ++ F+ HESCG+CTPCR GT   M +++++ +G   +++++
Sbjct: 321 TGTTIVLDEDDCIIDSLLVVANFFHHESCGKCTPCRVGTYEQMNILKKIKEGRGTEKDLE 380

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            L  +S+NI   +IC LG +A   +   ++ F    E  +++  +  F
Sbjct: 381 YLKHLSENIPAGSICGLGFSAPQAVSDALRKFPEEFEAHLNRSCKVCF 428


>gi|256783976|ref|ZP_05522407.1| respiratory chain oxidoreductase [Streptomyces lividans TK24]
          Length = 419

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 156/403 (38%), Positives = 219/403 (54%), Gaps = 10/403 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +   +      SL D  + G +  + +    G   +I EV  +GL GRGGA F TG KW 
Sbjct: 19  LLHRIGTTDPTSLDDYRAHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQ 78

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                  D PHYLV NADESEPGT KDR +M  +P+ L+E   IA++A GAH  ++Y+RG
Sbjct: 79  ATA-AQPDHPHYLVCNADESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRG 137

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+ R    L  A+++    GLLG +    GY  DI +  GAGAYICGEETAL  S+EG++
Sbjct: 138 EYPRALARLTHAIEQARTRGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGRR 197

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR KPPFP   GL+G PT  NNVE++  V  IL  GA  Y+  G   + G KLF +SG
Sbjct: 198 GEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILTMGAEAYAAIGTPTSTGPKLFCVSG 257

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E     T  EL+           DNL AV+ GG++   +   ++    + ++
Sbjct: 258 TVARPGVYELPFGATLGELLALAG-----VRDNLRAVLLGGAAGGFVRPDEL-DIPLTFE 311

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G +E G+ LG+  V+  D +  + + + R++ F++ ESCGQC PCR GT      + R+ 
Sbjct: 312 GTREAGTTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIA 371

Query: 367 K--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
              G A   +I LL EV + +   +IC LG  A   ++  I  
Sbjct: 372 DRTGAAAADDIALLREVGRAMRDASICGLGQTAWNAVESAIDR 414


>gi|182412305|ref|YP_001817371.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
 gi|177839519|gb|ACB73771.1| NADH dehydrogenase (quinone) [Opitutus terrae PB90-1]
          Length = 452

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 180/437 (41%), Positives = 247/437 (56%), Gaps = 29/437 (6%)

Query: 4   DQDRIFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
           +Q RI      +        ++  +  G ++ + +   +    +I+EVK SGLRGRGGAG
Sbjct: 5   EQRRIIFR--HIDEPGYTNDIACYLRNGGYEVMKRAFTRPPQELIDEVKKSGLRGRGGAG 62

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW  + +  S +P YL+VNADESEPGT KDR I+  +PH LIEG +I+ FA    
Sbjct: 63  FPCGVKWGLVDR-KSGKPIYLIVNADESEPGTFKDRYIIHQDPHQLIEGTMISCFANNVQ 121

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
            A+IY+RGEF      L+ A+ E      +G N     Y  +I VH GAGAYICGEET L
Sbjct: 122 QAYIYIRGEFPHGARILERAIQEAREHNFVGKNILGTAYSCEIYVHRGAGAYICGEETGL 181

Query: 179 LESLEGKKGQPRLKPPF-PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           +ESLEGK+  PR+KPPF PA +G+Y CPT VNNVE++  V  I   G   ++  G  NN 
Sbjct: 182 IESLEGKRAYPRIKPPFFPAVLGVYQCPTIVNNVETLCHVKYIAEVGGEAFAKIGTPNNT 241

Query: 238 GTKLFSISGHVNYPCTVEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL--- 293
           GT++F +SGHV  P   E     +T  +L+   CGG   G     AVIPGGSS   +   
Sbjct: 242 GTRIFCVSGHVQRPGYYEFETGKVTLGQLLNDVCGGPLPGRK-FKAVIPGGSSAKIMRFG 300

Query: 294 ---------------PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
                              +    MD+D L  +G+  G+  VIVMD S ++++A+  ++ 
Sbjct: 301 ERYKGKRKAGTEMVDYDWGVEDVPMDFDSLAMIGTMGGSGGVIVMDDSVNMVEALANINA 360

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           FY HESCGQCTPCREG+ WM R+  R+V   A++ +  LL  V+  I GRTICA G+A +
Sbjct: 361 FYSHESCGQCTPCREGSLWMKRITTRMVHANAREEDAALLKSVADQIPGRTICAFGEACS 420

Query: 399 WPIQGLIKNFRPLIEER 415
           WP Q  ++ F    +  
Sbjct: 421 WPTQSFVQKFGDEFKAY 437


>gi|146278886|ref|YP_001169045.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025]
 gi|145557127|gb|ABP71740.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025]
          Length = 509

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/410 (35%), Positives = 214/410 (52%), Gaps = 7/410 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q R+     G+     L +  + G ++ + + +   R  I+ EV  SGLRGRGGAGF TG
Sbjct: 97  QTRLTFARCGITDPLCLEEYEAHGGFEGLHRAIGMSRAEILQEVIESGLRGRGGAGFPTG 156

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW  + +  +D   Y+V NADE + GT  DR IM  +P TLIEG  IA  A GA   ++
Sbjct: 157 IKWKTVSEAQAD-QKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYV 215

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    E +  AV      GLLG +    G   D+ +  GAGAY+CGEET+LL SL
Sbjct: 216 YMRSEYPDAVEVMIEAVRIARGHGLLGPSVMGSGRAFDMEIRVGAGAYVCGEETSLLNSL 275

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G  R KPP PA  G  G PT VNNV S+A +P I ++GA++Y  FG   +RGT   
Sbjct: 276 EGKRGVVRAKPPLPALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPL 335

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            I+G+V      E +  ++  ++++   GG   G   + AV  GG      P   +    
Sbjct: 336 QIAGNVKRGGLFEIAFGMSLGQIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-LFDTP 393

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
             Y+        +G A ++V D + D++K       F   ESCG+CTPCR G    M  +
Sbjct: 394 FCYEEFAGAEGLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETV 453

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +R+ +G      I LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 454 DRIARG--DAAAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHFPDDF 501


>gi|57235004|ref|YP_180896.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225452|gb|AAW40509.1| [Fe] hydrogenase, HymB subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 417

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 155/418 (37%), Positives = 227/418 (54%), Gaps = 9/418 (2%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + D   I  +L       +   M+ G +  + K L    D +I EVK S L GRGGA F 
Sbjct: 1   MQDIKIITRHLNTASSADIDVYMADGGYQALKKALSMTPDEVIAEVKRSKLVGRGGAAFP 60

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KW    K  +  P Y+V NA E EPGT KDR I++++PH ++EG +IA++A+G    
Sbjct: 61  TGLKWELTRKEKA-NPKYIVCNASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQG 119

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           FI+ R  +  E E  Q A+D+    G LG N     + +DI  +  AGAYICGEETAL E
Sbjct: 120 FIHAREVYTEEIELFQKAIDQATERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFE 179

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG +G P  +PP+P  VGL   PTTVNNVE++  VP I+  GA W++  G  +  GTK
Sbjct: 180 SLEGHRGIPAARPPYPVQVGLMDKPTTVNNVETLCNVPAIINNGADWFAAIGHPDYPGTK 239

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF +SG+V  P   E  +     +L+E   GG+ G      AV+PGG S   L       
Sbjct: 240 LFCLSGNVKEPGVFEMPLGTNLKDLLE-AGGGVDG---KFKAVLPGGISSSLLTE---MD 292

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+  L + G+ LG+ AVIV++  T ++     ++ F+  E CG+C+ CREGT     
Sbjct: 293 VNLDFKTLAKAGTMLGSGAVIVINSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAE 352

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           ++ R  +G   + E++ L E+ + ++    C LG  A       I+NF+     ++ +
Sbjct: 353 ILSRFSRGQGNRNELEWLLELHEVMKDTASCGLGQVALNVAASAIRNFKGEFLAQVRK 410


>gi|299135120|ref|ZP_07028311.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
 gi|298590097|gb|EFI50301.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
          Length = 616

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 147/405 (36%), Positives = 222/405 (54%), Gaps = 9/405 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +   +  +  +S+ D ++ G +  + +  E G   +I+EVK S L GRGGA F  G+KW 
Sbjct: 208 LLKRVGKVDPESIDDYLATGGYAGLRRAFEMGPGKVISEVKDSRLMGRGGAAFPAGIKWE 267

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
              K  +  P YLV NADESEPGT KDR I+  +P  LIE   IA +AI A   +IY+RG
Sbjct: 268 STAKQPA-TPRYLVCNADESEPGTFKDRAILEGDPFALIESMTIAGYAISAERGYIYLRG 326

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+ R    L  A+      G LG N    G+  ++ +  GAGAYICGEETA+  S+EG +
Sbjct: 327 EYPRAYRMLSNAIARARGRGFLGDNVMGTGWSFELEIRRGAGAYICGEETAIFNSIEGYR 386

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR KPPFP   GL+  PT VNNVE++  VP I++ G + Y+  G E + G KLF +SG
Sbjct: 387 GEPRSKPPFPFEAGLFNKPTVVNNVETLCNVPLIMQMGGAEYAKIGTEGSTGPKLFCVSG 446

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           ++  P   E     T  ++I+   G        L AV+ GG++   + A ++    + ++
Sbjct: 447 NLVRPGVYEVPFGATLGDVIKLAGG--VPQGRKLQAVLLGGAAGVFVRADELH-IPLTFE 503

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G +   + LG+  V+  D + D+   + R++ F++ ESCGQC PCR GT      + R++
Sbjct: 504 GARANNATLGSGVVLAFDDTVDLPAILLRIASFFRDESCGQCVPCRVGTVRQEEALLRIM 563

Query: 367 KGIAQ----KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           +        +R + LL +V   ++  +IC LG AA   ++  I  
Sbjct: 564 RNGRDTAAKERNVGLLRDVGLVMKDSSICGLGQAAWNAVESAIDR 608


>gi|126463500|ref|YP_001044614.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029]
 gi|126105164|gb|ABN77842.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029]
          Length = 509

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 145/410 (35%), Positives = 214/410 (52%), Gaps = 7/410 (1%)

Query: 5   QDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           Q R+     G+     L +  + G ++ + + +   R  I+ EV  SGLRGRGGAGF TG
Sbjct: 97  QTRLTFARCGITDPLCLEEYEAHGGFEGLHRAIAMSRTEILQEVIDSGLRGRGGAGFPTG 156

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW  + +  +    Y+V NADE + GT  DR IM  +P TLIEG  IA  A GA   ++
Sbjct: 157 IKWKTVSEAEA-AQKYIVCNADEGDSGTFADRMIMEGDPFTLIEGMTIAGLATGATRGYV 215

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           Y+R E+    + +  AV    A GLLG +    G   D+ +  GAGAY+CGEET+LL SL
Sbjct: 216 YMRSEYPDAVQVMGEAVRIARAHGLLGPSVMGSGRAFDMEIRVGAGAYVCGEETSLLNSL 275

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK+G  R KPP PA  G  G PT VNNV S+A +P I ++GA++Y  FG   +RGT   
Sbjct: 276 EGKRGVVRAKPPLPALEGFLGKPTVVNNVISLASIPVIFQKGAAYYRDFGLGRSRGTIPL 335

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            I+G+V      E +  ++  ++++   GG   G   + AV  GG      P   +    
Sbjct: 336 QIAGNVKRGGLFEIAFGMSLGQIVDDIAGGTASGRP-VKAVQVGGPLGAYFPRA-LFDTP 393

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
             Y+        +G A ++V D + D++K       F   ESCG+CTPCR G    M  +
Sbjct: 394 FCYEEFAGAEGLVGHAGIVVFDDTADMLKQARFAMEFCAIESCGKCTPCRIGAVRGMETV 453

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +R+ +G      I LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 454 DRIARG--DTAAIPLLTDLCATMKSGSLCALGGFTPYPVMSALTHFPDDF 501


>gi|195952596|ref|YP_002120886.1| NADH dehydrogenase (quinone) [Hydrogenobaculum sp. Y04AAS1]
 gi|195932208|gb|ACG56908.1| NADH dehydrogenase (quinone) [Hydrogenobaculum sp. Y04AAS1]
          Length = 425

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 158/395 (40%), Positives = 228/395 (57%), Gaps = 11/395 (2%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            + + +    +  ++K L    + I+ EV  S LRGRGGAGF TG KW F  +  +  P 
Sbjct: 30  DIKEYLKDNGYLALEKALSMKPEDIVEEVDNSNLRGRGGAGFPTGRKWKFCLQNKA--PR 87

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           YLV NADESEPGT KDR I+  +PH L+EG +I+++A+G + A+IY+RGE+      L+ 
Sbjct: 88  YLVCNADESEPGTFKDRLIIERDPHLLLEGMIISAYALGVNRAYIYIRGEYPAGYYILRN 147

Query: 139 AVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A++E    G LG N    G+D++I+V  GAGAYICGEETALL S+EGK+G PRLKPPFP 
Sbjct: 148 AIEEAKKEGFLGKNILNSGFDLEILVSRGAGAYICGEETALLNSIEGKRGHPRLKPPFPV 207

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+G PT VNNVE+++ +P I+  G+  Y   G  +  G KLF +SG V  P   E  
Sbjct: 208 QVGLWGRPTVVNNVETLSNIPIIINLGSEGYKEIGPMDYPGPKLFPVSGKVKKPGVYELP 267

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M+ T  E+I K+ GG                ++ CL   ++    MDY          GT
Sbjct: 268 MNTTLREVIFKYAGGTIRNVPIKAVFS---GALDCLSVSEL-DTPMDYSQF----GFGGT 319

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             VIV+    DI+ A ++++ FY+HE+CG CTPCR G      +++++ K  A  +  + 
Sbjct: 320 GTVIVLTEEDDIVNACYKIAEFYEHETCGFCTPCRIGCHEQAYLLDKIEKDEATPKTWEG 379

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L  V+K I+  ++C LG  A+  I+  ++ F    
Sbjct: 380 LRFVTKYIQPTSVCGLGAVASRLIKQAMEKFPEDF 414


>gi|24653819|ref|NP_725449.1| CG8102, isoform A [Drosophila melanogaster]
 gi|7303085|gb|AAF58152.1| CG8102, isoform A [Drosophila melanogaster]
          Length = 481

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 193/423 (45%), Positives = 259/423 (61%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W    ++LE+G +WI+ +V  SGLRGRGGAGF 
Sbjct: 58  LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQVSKSGLRGRGGAGFY 117

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            G+KW F+ +  S++ P  ++VN  E EPGTCKDRDI+RHEPH LIEG ++   A+G   
Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG++    G   D++V  G   Y+CGEETA++
Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 296

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ +SG VN PCTVEE MSI   +LIE+H GG++GGWDNL AV PGG S P L      
Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 356

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRKIEERLLK 476

Query: 419 YHR 421
           Y +
Sbjct: 477 YAK 479


>gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 621

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 146/420 (34%), Positives = 222/420 (52%), Gaps = 5/420 (1%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               QDR +  +   +  + L DS+  G +  +   L    + ++  V  SGLRGRGG G
Sbjct: 129 FYAGQDRQVLRHCGHIDPRELRDSVRAGGYRALGLALGMEPEDVVKAVSDSGLRGRGGGG 188

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW    +    +  +++ N DE +PG   DR +M  +PH+++EG +I + A+GA 
Sbjct: 189 FPTGIKWDSCRRAK-GKHRFVLANGDEGDPGAFMDRSLMEGDPHSVLEGMIIGAHAVGAR 247

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             F+YVR E+    E L  A+ +   +GLLG N    G D D+ V  G GA++CGE +AL
Sbjct: 248 KGFLYVRAEYPLAVEHLNRAIAQAREAGLLGRNILGSGLDFDLEVCRGGGAFVCGESSAL 307

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           + S+EG+ G+PR+K       GL+ CPT +NNVE+ A VP ++ +GA  Y   G + + G
Sbjct: 308 MASIEGRAGEPRVKYIRSTERGLWDCPTVLNNVETWANVPLVIPQGAQAYRTKGTDGSPG 367

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK+FS+ G V +   VE  M  T  E+I    G    G     AV  GG S  CLP  ++
Sbjct: 368 TKVFSLVGKVRHSGLVEVPMGTTLREIIFGLGG-GVLGRGRFKAVQTGGPSGGCLPEDRL 426

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +D+D L E GS +G+  +IVMD  T ++        F   ESCG+C PCREG   +
Sbjct: 427 -DIPVDFDRLVEEGSMMGSGGMIVMDHRTCMVDVARYFVHFLAEESCGKCVPCREGLQAI 485

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++  L +G  +  +   L E+ + +    +C LG  AA P+   ++ F     E  +Q
Sbjct: 486 LDILNDLTQGRGRPGDGRRLEEMGRALSDTALCGLGQTAANPVLSTLRFFPEEYREHEEQ 545


>gi|251772862|gb|EES53421.1| NADH dehydrogenase (Quinone), subunit F [Leptospirillum
           ferrodiazotrophum]
          Length = 624

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 170/423 (40%), Positives = 245/423 (57%), Gaps = 7/423 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGF 60
           L ++  +FT L   +   +    S G +  + +I+  K R  I+NE+++SGL GRGG  F
Sbjct: 172 LVNEPVVFTGLKAKETLWIDRYESAGGYAMLREIMAAKDRTRIMNEIESSGLSGRGGGAF 231

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               K   + K       Y+V NADE EPGT KDR IM  +PH+ IEG ++AS+AI A  
Sbjct: 232 PMAPKLKNVMKNPKPH--YVVANADEGEPGTFKDRYIMERDPHSFIEGMILASYAIDADA 289

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +IY+R E+    + L  A+DE  A G LG N    G+D DI ++ G GAYICGE+++LL
Sbjct: 290 GYIYLREEYPHSYQILLKALDEARAKGYLGKNILGTGWDYDIRIYRGGGAYICGEDSSLL 349

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G PR KPP  +++GL+  PT VNNVE+ A +P IL+ G +WY   G E + GT
Sbjct: 350 NSLEGKRGTPRNKPPRLSDIGLWKKPTDVNNVETFAAIPRILKEGGAWYKSLGDEKSAGT 409

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF +SG++  P   E  +  T   LIE+  GG+  G     AV+P GS+   L   QM 
Sbjct: 410 KLFCLSGNIRRPGIYEVPLGATLRHLIEELGGGVPEGRK-FKAVLPAGSASSMLYPVQM- 467

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY  +K  G+ LG A++IVMD S  ++   + +S FY HESCGQCTPCR+GT  + 
Sbjct: 468 DMALDYPTVKAAGAFLGAASLIVMDDSVCMVDLAFWMSGFYHHESCGQCTPCRDGTEDIH 527

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            V++++V G  +   ++ +  + + +   +IC LG +A       I++F     E I   
Sbjct: 528 EVLQKIVMGEGELSHLEFIKSLGEYMRTASICGLGTSAPNIPISSIEHFEEEWREHILD- 586

Query: 420 HRC 422
           HRC
Sbjct: 587 HRC 589


>gi|29828377|ref|NP_823011.1| NADH dehydrogenase I chain F [Streptomyces avermitilis MA-4680]
 gi|29605480|dbj|BAC69546.1| putative NADH dehydrogenase I chain F (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 607

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 158/403 (39%), Positives = 227/403 (56%), Gaps = 10/403 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +   +  +   SL D  + G +  + +  E G   +I EV  +GL GRGGA F TG KW 
Sbjct: 207 LLRRVGVVDPASLDDYRAHGGYAALRRAFELGPAEVIREVTDAGLVGRGGAAFPTGRKWQ 266

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                  DRPH+LV NADESEPGT KDR IM  +P+ L+E   IA++A+GAH  ++Y+RG
Sbjct: 267 ATASRP-DRPHHLVCNADESEPGTFKDRVIMEGDPYALVESMTIAAYAVGAHQGYLYLRG 325

Query: 128 EFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+ R  E +  A+++  A GLLG +    GY  DI +  GAGAYICGEETAL  S+EG +
Sbjct: 326 EYPRALERMSHAIEQARARGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGYR 385

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR KPPFP   GL+G PT  NNVE++  V  +L  GA  Y+  G   + G KLF +SG
Sbjct: 386 GEPRSKPPFPVEKGLFGRPTAENNVETLVNVLPVLTMGAQAYAAIGTAKSTGPKLFCVSG 445

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V+ P   E     T  EL+E          + L AV+ GG++   +   + R   + ++
Sbjct: 446 SVDRPGVYELPFGATLGELLELAG-----VRERLRAVLLGGAAGGFVRPDE-RDIPLTFE 499

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G ++ G+ LG+  V+  D +  + + + R++ F++ ESCGQC PCR GT      + R+V
Sbjct: 500 GTRQAGTTLGSGVVMAFDDTVPLPRLLLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIV 559

Query: 367 K--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
              G A   +I LL EV + +   +IC LG +A   ++  I  
Sbjct: 560 ARTGAAAADDIALLREVGRAMRDASICGLGQSAWNAVESAIDR 602


>gi|300786459|ref|YP_003766750.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
 gi|299795973|gb|ADJ46348.1| NADH dehydrogenase I subunit F [Amycolatopsis mediterranei U32]
          Length = 581

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 155/403 (38%), Positives = 219/403 (54%), Gaps = 8/403 (1%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           R+   +  +   SL D  + G +  +   L  G+  +I EV  +GL GRGGA F TG KW
Sbjct: 180 RLLRRVGVVDPSSLDDYRATGGYAALRNALRMGQAAVIREVTDAGLLGRGGAAFPTGRKW 239

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           +      +  PHYLV NADESEPGT KDR ++  +P  L+E   IA+FAIGA   ++Y+R
Sbjct: 240 AATAAQPAG-PHYLVCNADESEPGTFKDRVLLEGDPFALVEAMTIAAFAIGARQGYVYLR 298

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           GE+ R    L+ A+D     G LG +     G+  DI +  GAGAYICGEETA+  S+EG
Sbjct: 299 GEYPRALRLLRNALDVGRERGFLGVDVMGHAGFSFDIEIRRGAGAYICGEETAIFNSIEG 358

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
            +G+PR KPPFP   GL+G PT VNNVE++  VP IL  GA+ Y   G E + G KLF +
Sbjct: 359 FRGEPRTKPPFPVEQGLFGKPTVVNNVETLVNVPLILTEGAAAYRSIGTEASAGPKLFCL 418

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG+V  P   E     T  EL+    G       +L AV+ GG++   +   ++    + 
Sbjct: 419 SGNVERPGVYEVPFGATLRELLALAGG--VPEGRSLRAVLLGGAAGGFVRPDEL-DLPLT 475

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           ++  +   + LG+  V+V+D   D+   + R++ F++ ESCGQC PCR GT      + R
Sbjct: 476 FEDARAAKTTLGSGVVLVLDDLADLGGFLLRIAEFFRDESCGQCVPCRIGTVRQEEAIRR 535

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           ++       E  LL EV   +   +IC LG  A   I+  I  
Sbjct: 536 VLAAG--SEEQPLLREVGGVMRDSSICGLGQTAWNAIESAIDR 576


>gi|301058595|ref|ZP_07199600.1| NADH-quinone oxidoreductase subunit F [delta proteobacterium
           NaphS2]
 gi|300447327|gb|EFK11087.1| NADH-quinone oxidoreductase subunit F [delta proteobacterium
           NaphS2]
          Length = 473

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 158/455 (34%), Positives = 224/455 (49%), Gaps = 48/455 (10%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-- 73
           Q   L +  + G +  +   L      +I  V+ S L GRGGAGFS G KWSF+P     
Sbjct: 16  QPLGLGEYEAVGGYQGLRAALTMEPHQVIKVVQDSTLGGRGGAGFSAGRKWSFVPDEDLH 75

Query: 74  ----------------------------------------SDRPHYLVVNADESEPGTCK 93
                                                   +    Y+V NADE EPG  K
Sbjct: 76  ERHVFPHEMVAMIEEPDQWGHVSAGFTTGIKWSFMPKGEHAASQAYVVANADEMEPGVFK 135

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           DR +M   PH LIEG +I + AIGA+  +I++R  + +    ++ A++E + +G LG + 
Sbjct: 136 DRVLMEGNPHQLIEGMLITAHAIGANTGYIFLRWAYKKAARCIEKAINEAHEAGYLGEHI 195

Query: 154 -KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
               + VDI +H  AG YICGE TALL SLEG++  PR KPP  A VGL+G PT VNNVE
Sbjct: 196 LGTDFGVDIFLHTSAGRYICGEATALLNSLEGRRANPRAKPPHTAAVGLWGRPTDVNNVE 255

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           +++ VP IL+ GA WY      +  GTK++ +SG V  P   E  M  T  E+IE+H GG
Sbjct: 256 TLSNVPHILKNGADWYKDLSLTDEGGTKIYGVSGRVKGPGWWELPMGTTAREIIEEHAGG 315

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           +  G+  L   +PGG+S   L A  +    MD   +  +GS +G   +I++D  T  +  
Sbjct: 316 MADGY-RLRGFLPGGASTEFLLAEHL-DVPMDVKSVSALGSRMGCGTMIILDDKTCPVGM 373

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI--EGRTI 390
           +  +  F+  ESCG CTPCREG  W  RV+  +  G     +++ L   ++ I     T 
Sbjct: 374 VNNVMHFFARESCGWCTPCREGLPWTSRVLSAIEAGEGHPEDMERLRSHARWIGGPDSTF 433

Query: 391 CALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           CAL   A  P+Q  +  F     E I     C ++
Sbjct: 434 CALAPGAMEPLQSALTYFEDDFREHIRLGC-CPWR 467


>gi|195027493|ref|XP_001986617.1| GH21461 [Drosophila grimshawi]
 gi|193902617|gb|EDW01484.1| GH21461 [Drosophila grimshawi]
          Length = 546

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 197/421 (46%), Positives = 263/421 (62%), Gaps = 3/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NLYG     L  +  RG W     +L+ G +WI++EVK SGLRGRGG+G+ 
Sbjct: 126 LKDCDRIFQNLYGFHDWRLKGACQRGDWYRTADLLDMGANWIVDEVKRSGLRGRGGSGYY 185

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG KW F+ KV +     L++N  E EPGTCKDR+I+RHEPH +IEGC++A +A+G    
Sbjct: 186 TGNKWEFLQKVNA-NNKILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGYAMGCEKC 244

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IYVR  F  E  +LQ A+ E Y  GLLG N+   G   DI V  G   Y+ GEETAL+ 
Sbjct: 245 IIYVRNCFYNEACNLQFALAEAYRYGLLGCNACDTGIKFDIQVQRG-DRYLSGEETALVN 303

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK  +PR +PP+    G +  P  V N E++AVVPTILRRGA W++G GR  N GTK
Sbjct: 304 CLMGKLARPRKRPPYLHEQGYFDHPCLVLNTETLAVVPTILRRGAKWFTGLGRNMNFGTK 363

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSI GHV +PCTVEE MS+   E+I+ H GG+ GGW+NLL V PGG S P +      G
Sbjct: 364 LFSICGHVQHPCTVEEEMSMPLREIIDMHAGGVCGGWNNLLGVFPGGLSSPLIGKVGAEG 423

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD L++ GS  GT  +IV+  + D +  + R   FY  ++C QCTPCR+G  W+ +
Sbjct: 424 LLMDYDCLQKAGSSFGTGGIIVVSNNCDPLLVMQRSIEFYMKQTCKQCTPCRDGAIWLPK 483

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           ++    KG +  + ID +  + K + G TIC L D+ A    GLI +F P I++RI+ + 
Sbjct: 484 ILRNFTKGESVPQMIDFVAVICKTMIGTTICGLSDSQANVAMGLITHFAPHIQQRIEAFG 543

Query: 421 R 421
           +
Sbjct: 544 K 544


>gi|325000957|ref|ZP_08122069.1| respiratory chain oxidoreductase [Pseudonocardia sp. P1]
          Length = 499

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/404 (38%), Positives = 229/404 (56%), Gaps = 10/404 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           R+   +  +   SL D  SRG +  + + ++ G   +I E+K S L GRGGA F TG+KW
Sbjct: 81  RLLRRVGVVDPSSLDDYRSRGGYAALRRAVDLGPTRVIAELKDSSLTGRGGAAFPTGVKW 140

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             + +   +RPH+LV NADESEPGT KDR +M  +P  L+E   IA +  GA    +Y+R
Sbjct: 141 EGVAQAP-ERPHHLVCNADESEPGTFKDRVLMEGDPFGLVEAMTIAGYVTGATVGHLYIR 199

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+      LQ A+    A GLLG +    G+  DI +  GAGAYICGEETALLES+EG 
Sbjct: 200 GEYPLATRRLQDAIAAARARGLLGDDVMGEGFAFDIDLRRGAGAYICGEETALLESIEGY 259

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G+PR KPPFPA+VGL+G PT +NNVE++  V  +L  G   ++  G   + G+KLF +S
Sbjct: 260 RGEPRNKPPFPASVGLFGKPTAINNVETLYNVLEVLDIGGQAFAVVGGGRSTGSKLFCVS 319

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E     T  +L++   G       +L  V+ GG++   +  G +   ++  
Sbjct: 320 GAVGTPGVYEVDFGTTLRQLLDLAGG----VRGSLRTVLLGGAAGGFVLPGDL-DVVLTL 374

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G +++G+ LG+  V+V D   D+   + R++ F++ ESCGQC PCR GT      + RL
Sbjct: 375 EGARDIGATLGSGVVLVFDEDADLTGTLRRIAAFFRDESCGQCVPCRVGTVRQEEALARL 434

Query: 366 VKGIA---QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
            +      ++ EI LL ++++ +   +IC LG  A   +   I 
Sbjct: 435 ERNAPIGSRETEIALLDDLARVMRDASICGLGQTAPSAVTSAID 478


>gi|90579193|ref|ZP_01235003.1| NADH dehydrogenase I, F subunit [Vibrio angustum S14]
 gi|90440026|gb|EAS65207.1| NADH dehydrogenase I, F subunit [Vibrio angustum S14]
          Length = 427

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 170/415 (40%), Positives = 256/415 (61%), Gaps = 5/415 (1%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            N +  +  + ++    G + +++ I+ + R+ ++ E+KASGLRG GG GF TG+KW F+
Sbjct: 7   RNFHHPKPLNFAEYCENGGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFL 66

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            K  S  P YLVVN DESEPG+ KDR ++  +PHT++EG + +S+ +GA  AF+++RGE+
Sbjct: 67  AKDAS-HPVYLVVNLDESEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEY 125

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
               + L+ AV E  A+GL+G N    G+D+D+ VH  AG YICGEETALL +LEG +G 
Sbjct: 126 REGAKGLEKAVQEARAAGLVGENVMGSGWDLDVDVHLSAGRYICGEETALLNALEGYRGN 185

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR KPPFP   GL+G PT VNNVESI  +P I+ +GA W+   G+ +  G+ ++ +SG V
Sbjct: 186 PRSKPPFPIVKGLWGQPTIVNNVESICHIPWIVHKGAEWFKSQGKGDAAGSHIYQVSGPV 245

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E  +  T  ELI +H GG+    + L+  +PGG+S   +    +    +D+DG 
Sbjct: 246 KKPGFFELPLGTTARELIFEHAGGLLDDRE-LVGFLPGGASTQFMLPEHL-DVPLDWDGP 303

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
             +GS LGT  +IVMD +   I  +  L+ F+  ESCG CTPCR+G  +++ V+++   G
Sbjct: 304 ATVGSRLGTGGIIVMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVLKKFETG 363

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            A  +++DLL+E+ + I   T CAL   A  PI   +K+F+ + E  I +  RC 
Sbjct: 364 EATSKDLDLLHELCETIYPNTFCALAPGALMPIMTGLKHFKHVFESHI-EGQRCT 417


>gi|119504734|ref|ZP_01626812.1| NADH dehydrogenase (quinone) [marine gamma proteobacterium
           HTCC2080]
 gi|119459339|gb|EAW40436.1| NADH dehydrogenase (quinone) [marine gamma proteobacterium
           HTCC2080]
          Length = 526

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 149/423 (35%), Positives = 221/423 (52%), Gaps = 14/423 (3%)

Query: 2   LTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R I+  +  +      D +S G    + + LE     ++  V  SGLRGRGGAGF
Sbjct: 89  LACQNRWIYERVGIIDPVDPDDYVSHGGMAGLQRALEMSPMSVVQAVTESGLRGRGGAGF 148

Query: 61  STGMKWSFMPKVCS----------DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCV 110
            TG+KW  + +              R  Y+ VNADE + GT  DR +M  +P  L+EG  
Sbjct: 149 PTGIKWQTVAEQAPVPHKGDPVDAPRHKYICVNADEGDSGTFADRMLMEGDPFCLLEGMA 208

Query: 111 IASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGA 169
           IA+ A+GA    IY+R E+      +  A+++  A G LG +      + D+ +  GAG+
Sbjct: 209 IAAHAVGADRGMIYLRSEYPAAIAVMSDAIEKARARGWLGESILGSSCNFDVTIRVGAGS 268

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
           Y+CGEETA+LESLEG++G  R KPP PA  GL+G PT +NNV +IA VP+IL RG   Y+
Sbjct: 269 YVCGEETAMLESLEGRRGTVRAKPPLPAIEGLFGTPTVINNVLTIASVPSILARGPEAYA 328

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
             G+E +RGT++F ++G++     VE +  I+  ELI     G + G   L AV  GG  
Sbjct: 329 ELGQERSRGTQVFQLAGNIARGGIVEVAFGISAHELIFGLGQGTKSG-KPLKAVQVGGPL 387

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
              L A  ++   M Y+ L   G+ LG   ++V D S D+ +       F   ESCG+CT
Sbjct: 388 GAYLTADALQ-VPMAYESLAAEGAMLGHGGLVVFDDSVDMAEQARFAMEFCVEESCGKCT 446

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           PCR G    + V++ L+   A +    LL ++   +   ++CA+G     P+   +  F 
Sbjct: 447 PCRIGAVRGVEVIDDLLASDAPENAEQLLRDLCDVMTQGSLCAMGGLTPQPVLSALDQFP 506

Query: 410 PLI 412
              
Sbjct: 507 EDF 509


>gi|331697101|ref|YP_004333340.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951790|gb|AEA25487.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Pseudonocardia dioxanivorans CB1190]
          Length = 626

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 149/400 (37%), Positives = 226/400 (56%), Gaps = 10/400 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           R+   +  +   SL D  + G ++ + + +E G   ++ E+K S L GRGGA F TG+KW
Sbjct: 209 RLLRRIGVVDPGSLDDYRAHGGYEALRRAVELGASRVVRELKDSALTGRGGAAFPTGVKW 268

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             +      RPHYLV NADESEPGT KDR +M ++P  L+E   IA +A G    ++Y+R
Sbjct: 269 EGVA-TAQVRPHYLVCNADESEPGTFKDRVLMEYDPFGLVEAMTIAGWATGCERGYLYIR 327

Query: 127 GEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           GE+      L+ A++E    G LG++    G+  DI +  GAGAYICGEETALL S+EG 
Sbjct: 328 GEYPLATRRLEHAIEEARRRGFLGADVLGEGFTFDIELRRGAGAYICGEETALLNSIEGF 387

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G+PR KPPFP+  GL+G PT +NNVE++  V  +L  G   ++  G E + GTKLF ++
Sbjct: 388 RGEPRNKPPFPSVSGLFGKPTVINNVETLYNVLQVLDVGGPAFASVGAERSTGTKLFCVA 447

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P   E     T  EL+    G        L  ++ GG++   +   Q+    +  
Sbjct: 448 GSVAVPGVYEVEFGTTLRELLTLAGG----LRGELRTILLGGAAGGFVMPDQL-DVPLTL 502

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           +G +E+G+ LG+  V+  D   D++  + R++ F++ ESCGQC PCR GT      + RL
Sbjct: 503 EGAREIGATLGSGVVLAFDTDADLVATLRRIAAFFRDESCGQCVPCRVGTVRQEEALARL 562

Query: 366 VKG---IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
            +G     ++ E+ LL ++++ +   +IC LG  A   +Q
Sbjct: 563 ERGAPLGDRETELALLDDLARVMRDASICGLGQTAPAAVQ 602


>gi|195486237|ref|XP_002091420.1| GE12249 [Drosophila yakuba]
 gi|194177521|gb|EDW91132.1| GE12249 [Drosophila yakuba]
          Length = 481

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 193/425 (45%), Positives = 258/425 (60%), Gaps = 4/425 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W     +LE+G +WI+ ++  SGLRGRGGAGF 
Sbjct: 58  LNDCDRVFQNLYGRHDWRLQGACQRGDWHRTADLLEQGPEWIMEQIGKSGLRGRGGAGFY 117

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            G+KW F+ +  S + P  ++VN  E EPGTCKDRDI+RHEPH LIEG ++   A+G   
Sbjct: 118 AGLKWEFLRQTKSAKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG +    G   D++V  G   Y+CGEETA++
Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGDSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 296

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISG VN PCTVEE MSI   +LIE+H GG++GGWDNL AV PGG S P L      
Sbjct: 297 KLYCISGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPPTAG 356

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L++ GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 357 KVLMDFDSLQDAGSGFGCGAVIVMTKDCDPLAVMLRSIQFFEKHTCKQCSYCRDGAIWLP 416

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 417 EMFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVGVAESLVRMFSRQIEERLLK 476

Query: 419 YHRCN 423
           Y + +
Sbjct: 477 YAKAS 481


>gi|84499616|ref|ZP_00997904.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Oceanicola batsensis HTCC2597]
 gi|84392760|gb|EAQ04971.1| NAD dependent formate dehydrogenase, beta subunit (51 kDa)
           [Oceanicola batsensis HTCC2597]
          Length = 505

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 145/414 (35%), Positives = 206/414 (49%), Gaps = 7/414 (1%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+     G+    SL+D    G    + + L      I+ EVK SGLRGRGGAG
Sbjct: 89  FLAGQTRLTFARCGITDPLSLADYEGHGGLAGLRRALGMEAAAIVEEVKTSGLRGRGGAG 148

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  + +  ++   Y+V NADE + GT  DR IM  +P +LIEG +IA    GA 
Sbjct: 149 FPTGIKWDTVRQARAE-QKYIVCNADEGDSGTFADRMIMEGDPFSLIEGMIIAGLGTGAT 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y+R E+      +  A+      GLLG +    G   ++ V  GAGAY+CGEET+L
Sbjct: 208 KGFVYIRSEYPDAIAIMDRAIRLARDGGLLGPDILGSGRAFEMEVRIGAGAYVCGEETSL 267

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           L SLEGK+G  R KPP PA  G +G PT VNNV S+A +P I  +GA  Y+ FG   +RG
Sbjct: 268 LNSLEGKRGVVRAKPPLPALQGAFGRPTVVNNVLSLATIPVIFEKGAQHYADFGLGRSRG 327

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    I+G+V +    E +  +    L+ +  GG   G   + AV  GG       A   
Sbjct: 328 TMPIQIAGNVQHGGLYETAFGLPLGTLVNEIAGGTASGRP-VKAVQVGGPLGAYF-APHQ 385

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                 Y+     G  +G A ++V D + D+         F   ESCG+CTPCR G    
Sbjct: 386 FDTPFGYEEFDGAGGLIGHAGIVVFDDTADMAGMARFAMEFCAVESCGKCTPCRIGAVRG 445

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  ++R+  G      I  L ++ + +   ++CALG    +P+   +  F    
Sbjct: 446 VETIDRIAAGDPDATAI--LTDLCETMTAGSLCALGGFTPYPVMSALHLFPEDF 497


>gi|194882859|ref|XP_001975527.1| GG22361 [Drosophila erecta]
 gi|190658714|gb|EDV55927.1| GG22361 [Drosophila erecta]
          Length = 481

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 192/423 (45%), Positives = 255/423 (60%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W     +LE+G +W++ E+   GLRGRGGAGF 
Sbjct: 58  LNDCDRVFQNLYGRHDWRLQGACQRGDWHRTADLLEQGPEWMMKEISKCGLRGRGGAGFY 117

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            G+KW F+ +  S++ P  L+VN  E EPGTCKDRDI+RHEPH LIEG ++   A+G   
Sbjct: 118 AGLKWEFLRQTKSEKVPKMLIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 177

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG ++       D++V  G   Y+CGEETAL+
Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGDSACGTDIKFDVMVQRG-DRYLCGEETALI 236

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVVNAESIAVVPTILRRGSQWWAGLGRSYNTGT 296

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ ISG VN PCTVEE MSI   +LIE+H GG++GGWD L AV PGG S P L      
Sbjct: 297 KLYCISGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDKLAAVFPGGLSTPLLDPSTAG 356

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIV+ +  D +  + R   F++  +C QCT CR+G  W+ 
Sbjct: 357 KVLMDFDSLADAGSGFGCGAVIVISKDCDPLAVMLRSIQFFEKHTCKQCTYCRDGAIWLP 416

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 417 EMFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVAVAESLVRMFSRQIEERLLK 476

Query: 419 YHR 421
           Y +
Sbjct: 477 YAK 479


>gi|195334585|ref|XP_002033958.1| GM20146 [Drosophila sechellia]
 gi|194125928|gb|EDW47971.1| GM20146 [Drosophila sechellia]
          Length = 481

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 190/423 (44%), Positives = 259/423 (61%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W    ++LE+G +WI+ ++  SGLRGRGGAGF 
Sbjct: 58  LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQISISGLRGRGGAGFY 117

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            G+KW F+ +  S++ P  ++VN  E EPGTCKDR+I+RHEPH LIEG ++   A+G   
Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDREILRHEPHKLIEGILLVGVAMGCGR 177

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG++    G   D++V  G   Y+CGEETA++
Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSKWWAGLGRSYNTGT 296

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ +SG VN PCTVEE MSI   +LIE+H GG++GGW+NL AV PGG S P L      
Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWNNLAAVFPGGLSTPLLDPSTSG 356

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 476

Query: 419 YHR 421
           Y +
Sbjct: 477 YAK 479


>gi|195583606|ref|XP_002081608.1| GD25625 [Drosophila simulans]
 gi|194193617|gb|EDX07193.1| GD25625 [Drosophila simulans]
          Length = 481

 Score =  409 bits (1051), Expect = e-112,   Method: Composition-based stats.
 Identities = 190/423 (44%), Positives = 259/423 (61%), Gaps = 4/423 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W    ++LE+G +WI+ ++  SGLRGRGGAGF 
Sbjct: 58  LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQISISGLRGRGGAGFY 117

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            G+KW F+ +  S++ P  ++VN  E EPGTCKDR+I+RHEPH LIEG ++   A+G   
Sbjct: 118 AGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDREILRHEPHKLIEGILLVGVAMGCGR 177

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG++    G   D++V  G   Y+CGEETA++
Sbjct: 178 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 236

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 237 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSKWWAGLGRSYNTGT 296

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ +SG VN PCTVEE MSI   +LIE+H GG++GGW+NL AV PGG S P L      
Sbjct: 297 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWNNLAAVFPGGLSTPLLDPSTSG 356

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 357 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 416

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 417 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 476

Query: 419 YHR 421
           Y +
Sbjct: 477 YAK 479


>gi|148554394|ref|YP_001261976.1| NADH dehydrogenase (quinone) [Sphingomonas wittichii RW1]
 gi|148499584|gb|ABQ67838.1| NADH dehydrogenase (quinone) [Sphingomonas wittichii RW1]
          Length = 516

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 144/433 (33%), Positives = 218/433 (50%), Gaps = 33/433 (7%)

Query: 1   MLTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q R      G+     L+  ++ G W  ++         +++ +KASGLRGRGGAG
Sbjct: 85  FFARQQRFTFARCGINDPLDLAAYVASGGWRGLEAARAMAPQAVVDAIKASGLRGRGGAG 144

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +         ++V NADE + GT  DR +M  +P+ LIEG  IA+ A+GA 
Sbjct: 145 FPTGIKWQTVL-DAGPAEKFVVCNADEGDSGTFADRMLMEGDPYCLIEGMAIAAHAVGAD 203

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             ++Y+R E+     ++Q A++   ++ LL           + V  GAGAY+CGEETALL
Sbjct: 204 HGYVYIRSEYPFAIRAMQGAIE--RSAALLA-------PFTLEVRVGAGAYVCGEETALL 254

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +S+EGK+GQ R KPP PA  GL+G PT +NNV S+A VP IL  GA  Y+  G   +RGT
Sbjct: 255 DSIEGKRGQVRAKPPLPAIEGLFGQPTVINNVLSLAAVPFILSEGAEAYAAVGLGRSRGT 314

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G++      E    I+  EL+E   GG   G   + AV  GG     LP   M 
Sbjct: 315 MPVQLAGNIRNGGLFEIGFGISLGELVETVGGGTASGRP-VRAVQVGGPLGAYLPPS-MF 372

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+     G+ +G A + V D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 373 DLPFDYESFAAAGALIGHAGITVFDDTVDMAQMARFAMEFCAVESCGKCTPCRIGSTRGV 432

Query: 360 RVMERLVKG--------------------IAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
             ++R++ G                     + ++EI LL ++   ++  ++CALG    +
Sbjct: 433 ETIDRIIAGGRGGDRVEALPQMRNAKARQKSVEQEIALLRDLCDTMKYGSLCALGGFTPY 492

Query: 400 PIQGLIKNFRPLI 412
           P+   + +F    
Sbjct: 493 PVLSALNHFPEDF 505


>gi|89073313|ref|ZP_01159843.1| NADH dehydrogenase I, F subunit [Photobacterium sp. SKA34]
 gi|89051023|gb|EAR56487.1| NADH dehydrogenase I, F subunit [Photobacterium sp. SKA34]
          Length = 427

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 169/415 (40%), Positives = 256/415 (61%), Gaps = 5/415 (1%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            N +  +  + ++    G + +++ I+ + R+ ++ E+KASGLRG GG GF TG+KW F+
Sbjct: 7   RNFHHSKPLNFAEYCENGGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFL 66

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            K  S  P YLVVN DESEPG+ KDR ++  +PHT++EG + +S+ +GA  AF+++RGE+
Sbjct: 67  AKDAS-HPVYLVVNLDESEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEY 125

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
               + L+ AV E  A+GL+G N    G+D+D+ VH  AG YICGEETALL +LEG +G 
Sbjct: 126 REGAKGLEKAVQEARAAGLVGENVMGSGWDLDVDVHLSAGRYICGEETALLNALEGYRGN 185

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR KPPFP   GL+G PT VNNVESI  +P I+ +GA W+   G+ +  G+ ++ +SG V
Sbjct: 186 PRSKPPFPIVKGLWGQPTIVNNVESICHIPWIVHKGAEWFKSQGKGDAAGSHIYQVSGPV 245

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E  +  T  ELI +H GG+    + L+  +PGG+S   +    +    +D+DG 
Sbjct: 246 KKPGFFELPLGTTARELIFEHAGGLLDDRE-LVGFLPGGASTQFMLPEHL-DIPLDWDGP 303

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
             +GS LGT  +IVMD +   I  +  L+ F+  ESCG CTPCR+G  +++ V+++   G
Sbjct: 304 ATVGSRLGTGGIIVMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVLKKFETG 363

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            A  +++DLL+E+ + I   T CAL   A  PI   +K+F+ + +  I +  RC 
Sbjct: 364 EATSKDLDLLHELCETIYPNTFCALAPGALMPIMTGLKHFKHVFDSHI-EGQRCT 417


>gi|254442515|ref|ZP_05055991.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Verrucomicrobiae bacterium DG1235]
 gi|198256823|gb|EDY81131.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Verrucomicrobiae bacterium DG1235]
          Length = 454

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 184/433 (42%), Positives = 246/433 (56%), Gaps = 25/433 (5%)

Query: 3   TDQDRIFTNLYGLQG---KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            +Q  I    Y  +     S+   +  G +D + K +      I++EVK S LRGRGGAG
Sbjct: 6   KEQRLILK--YADEPGYTPSIDSYLEHGGYDMLKKAVTMEPQAIMDEVKKSTLRGRGGAG 63

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KWSF+ +  S +P YLV N DESEPGT KDR I+  +PH LIEG +I++FA    
Sbjct: 64  FPCGLKWSFVDR-KSGKPIYLVCNCDESEPGTFKDRQIVHKDPHQLIEGMMISAFANNVA 122

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
            +FIY+R E     + L  A+ E    G +G N    GY  DI+VH GA AYICGEET L
Sbjct: 123 KSFIYIREEMPHGAKILDQAILEAKEKGFVGDNVLGSGYSCDIVVHRGAAAYICGEETGL 182

Query: 179 LESLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           +ESLEGK+  PR+KPP FPA +GLY CPT VNNVE++     IL  GA  ++  GR NN 
Sbjct: 183 IESLEGKRANPRIKPPYFPAVLGLYNCPTIVNNVETLCNAVHILDMGAEAFTKIGRPNNA 242

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP--- 294
           GT+++ +SG V  P   E    +T  EL+   CGG       + A+IPGGSS+  L    
Sbjct: 243 GTRIWCVSGGVQRPGYYEV-GEMTLGELVYDICGG-PLPGRTIKAIIPGGSSMKILKNGE 300

Query: 295 ------------AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
                          +    +DYDG+   GS  G+  ++V+D +  I  A+  L  FY H
Sbjct: 301 RYTGKNPDGSEYDWGLEDIPLDYDGIAAAGSMSGSGGMMVLDDTVSIPGALANLMAFYSH 360

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ESCGQCTPCREG+ W+ ++  R+V   A+  ++DL+ +V+  I GRTICA G A AWP+Q
Sbjct: 361 ESCGQCTPCREGSLWLKKITSRMVHEQARPEDVDLMLDVAGQIAGRTICAFGFAVAWPVQ 420

Query: 403 GLIKNFRPLIEER 415
             I  F     E 
Sbjct: 421 SYIAKFEDEFREY 433


>gi|222839394|gb|EEE77731.1| predicted protein [Populus trichocarpa]
          Length = 391

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 191/366 (52%), Positives = 241/366 (65%), Gaps = 11/366 (3%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK------GRDWIINEVKASGLRGRGGAGFS 61
           I+ +L G    S+ D  +RG +  + KIL K       +D +I  VK SGLRGRGGAGF 
Sbjct: 30  IYADLTGAN-WSIKDYEARGGYQALRKILGKDGSEGLTQDQVIATVKESGLRGRGGAGFP 88

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       +LV N+DE EPGTCKDRDI+ H PH +IEG +IA++A+G    
Sbjct: 89  TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILVHNPHIVIEGMIIAAYAMGISLG 147

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE     E  +AA++E  A+G LG N     +   +  HHG GAYICGEETALLE
Sbjct: 148 YNYIHGEIFEAYERFEAALEEARAAGYLGDNIMGSSFSFQLHAHHGFGAYICGEETALLE 207

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G + Y   G+ NN GTK
Sbjct: 208 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGAAYLECGKPNNGGTK 267

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG VN P   E  +   F +L+E   G        L AVIPGGSS P LPA  +  
Sbjct: 268 IFSVSGDVNLPGNYEVPLGTPFSKLLELAGG--VRTGRKLKAVIPGGSSSPVLPADIIME 325

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MDYD + + GS LG+ AVIVMD S D+++++ RLS FY+HESCGQCTPCREGTGW+ R
Sbjct: 326 CTMDYDSIAKAGSMLGSGAVIVMDDSRDMVESLLRLSYFYQHESCGQCTPCREGTGWLWR 385

Query: 361 VMERLV 366
           V+ R+ 
Sbjct: 386 VVNRIE 391


>gi|332527763|ref|ZP_08403802.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
 gi|332112159|gb|EGJ12135.1| NADH dehydrogenase (quinone) [Rubrivivax benzoatilyticus JA2]
          Length = 490

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 139/414 (33%), Positives = 217/414 (52%), Gaps = 13/414 (3%)

Query: 2   LTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     GL    S++D  + G    +        + II  +  SGLRGRGGA F
Sbjct: 89  LQRQQRLTFARAGLTRPLSIADYEAHGGGAGLRAARAMAPEAIIQAIVDSGLRGRGGAAF 148

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +   +   Y+V N DE + GT  DR ++  +P  LIEG  IA+ A+GA  
Sbjct: 149 PAGIKWRTVAQAAGE-LKYVVCNGDEGDSGTYADRMLLEGDPFLLIEGMAIAARAVGASR 207

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
            ++YVR E+ R  E    A++   A+G L          D+ V  GAG+Y+CGEETA+LE
Sbjct: 208 GYVYVRSEYPRSVEIFGRAIEVARAAGWLD-------GFDMEVRMGAGSYVCGEETAMLE 260

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEG++G  R KPP PA  GL+G PT +NN+ ++A VPTIL  G ++Y  FG   + GT 
Sbjct: 261 SLEGRRGVVRAKPPLPAIAGLFGRPTVINNLLTLAAVPTILAEGPAYYRDFGVGRSTGTM 320

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            F ++G++ +P  VE +  +T  EL+    GG   G   + AV  GG     +P      
Sbjct: 321 PFQLAGNLRFPGLVERAFGVTLRELLFDFGGGTASGRP-VKAVQVGGPLGSYVPEEH-WD 378

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +DY+    +G+ LG   ++V D + D+ +       F   ESCG+CTPCR G+   + 
Sbjct: 379 VPLDYEAYAVVGAVLGHGGLVVHDDTADMARLARYAMAFCAQESCGKCTPCRIGSTRGVE 438

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           V+++L+ G  ++  +  L ++   ++  ++CA+G     P+   + ++      
Sbjct: 439 VIDKLLAGDDRQESL--LRDLCDTMKHASLCAMGSMTPLPVLSALNHYPEDFRR 490


>gi|312795433|ref|YP_004028355.1| NAD-dependent formate dehydrogenase beta subunit (fdsB)
           [Burkholderia rhizoxinica HKI 454]
 gi|312167208|emb|CBW74211.1| NAD-dependent formate dehydrogenase beta subunit (fdsB) (EC
           1.2.1.2) [Burkholderia rhizoxinica HKI 454]
          Length = 540

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 145/417 (34%), Positives = 217/417 (52%), Gaps = 9/417 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L+ Q R+ F+ +  +   S+ D ++ G    + + L+         +  +GLRGRGGA F
Sbjct: 108 LSKQQRLTFSRIGLIDPLSIDDYVAHGGLQGLHRALQMAPAAACQLLIDAGLRGRGGAAF 167

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +D   Y+V NADE + GT  DR  M  +P  LIEG +IA  + GA  
Sbjct: 168 PAGIKWRTVLQAQAD-QKYVVCNADEGDSGTFSDRLSMECDPFGLIEGMIIAGVSTGATQ 226

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            ++YVR E+      L AA+    A+G LG +    G   D+ V  GAGAY+CGEETALL
Sbjct: 227 GYLYVRSEYPLAIARLNAAIARARAAGWLGPDVLGSGRAFDLFVAKGAGAYVCGEETALL 286

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  G  G PT +NNV ++A VP I  RG ++Y  FG   +RGT
Sbjct: 287 ESLEGKRGIVRAKPPLPALAGYRGKPTVINNVITLASVPIIFARGDAFYRDFGMGRSRGT 346

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G+V     VE +  +T  EL+ +  GG   G     A+  GG     LP  Q  
Sbjct: 347 LPFQLAGNVQRGGLVEVAFGVTLRELVFEFGGGTASGRPA-RAIQVGGPLGTYLPPSQ-W 404

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   ++V D + ++ +       F   ESCG+CTPCR G+    
Sbjct: 405 DVPLDYEAYTAIGAVVGHGGIVVHDDTANLAELARYAMHFCALESCGKCTPCRIGSTRGA 464

Query: 360 RVMERLV----KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V+++L        A+   + LL E+   +   ++CA+G    +P+   + +F    
Sbjct: 465 EVIDKLRAPEQDARARTHHVTLLRELCDTMLHGSLCAMGGMTPYPVLSALDHFPEDF 521


>gi|261416516|ref|YP_003250199.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372972|gb|ACX75717.1| NADH dehydrogenase (quinone) [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327301|gb|ADL26502.1| NADH-quinone oxidoreductase, F subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 435

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 180/419 (42%), Positives = 254/419 (60%), Gaps = 5/419 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGAGF 60
           + +  ++ T  +G   + +      G + N+ +++    +  +I+ V+ S LRGRGGAGF
Sbjct: 1   MAECVKVCTQNFGKGAQDIEVYKKLGGYSNISERLFNMSQFELIDYVQRSNLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TGMKWSF+P+  + +P Y+VVNADE E GT KD  +M  +PH LIEG +IA++A+G+  
Sbjct: 61  PTGMKWSFVPR-GTGKPVYIVVNADEGEGGTFKDHFLMLEDPHRLIEGLIIAAWALGSRA 119

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY RGEF+   E+L  A+++ YA+G LG N     +  DI VH GAGAYICGEETAL+
Sbjct: 120 AYIYCRGEFLPCIEALNKALNQAYAAGYLGENICGTKFSFDIFVHRGAGAYICGEETALI 179

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEG+KGQPRLKPPFPA  G +  PT VNNVE+I  +P IL    S Y+  G     GT
Sbjct: 180 NSLEGQKGQPRLKPPFPAVCGAWKSPTCVNNVETIMSLPWILSHDPSDYAKMGTPRAGGT 239

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISG V  P   E  +      +I  + GG+ GG   L AV+PGGSS   L A +  
Sbjct: 240 KVFCISGDVKNPGVYEAPLGTPMMTMINDYAGGVVGG--KLKAVLPGGSSCAPLTAEEAA 297

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A MDY+ L  M +  G+ A+IV++ + +++  +  L  FY HESCGQCTPCREGTG + 
Sbjct: 298 VATMDYECLASMKTMFGSGAMIVINDTHNMVDLLNCLGNFYSHESCGQCTPCREGTGLLH 357

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           R++ ++V G     +++L+  +S    G TIC L  +   P+      FR   +E I +
Sbjct: 358 RILNQMVAGNGHDGDVELMQSLSSGFGGVTICPLSISLGGPVSSYTAKFRADFDEYIAK 416


>gi|92115243|ref|YP_575171.1| NADH-quinone oxidoreductase, F subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91798333|gb|ABE60472.1| NADH dehydrogenase subunit F [Chromohalobacter salexigens DSM 3043]
          Length = 446

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 160/406 (39%), Positives = 230/406 (56%), Gaps = 8/406 (1%)

Query: 20  LSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L     +  + +V++   +     +I E+K + LRGRGG GFS G+KWS   +       
Sbjct: 31  LEAYREQQGYASVERAFRDLTSKTLIEELKTANLRGRGGGGFSAGLKWSLTVQGEGIPRG 90

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE EPGT KDR ++  +PH LIEG ++A FA  A+  +I++RGE++    ++Q 
Sbjct: 91  YIVCNADEMEPGTFKDRLLLEQQPHLLIEGMILAGFANNAYQGYIFMRGEYVDAARTVQR 150

Query: 139 AVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A+DE  A+G LG + +  G+D DI +H GAG YICGEETAL+ SLEGK+  PR KPPFP 
Sbjct: 151 ALDEARAAGWLGRDVAGSGWDFDIALHTGAGRYICGEETALINSLEGKRANPRAKPPFPG 210

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVE 255
             G +G PT VNNVE++  VP+I+  GA WY G   G+  + GTKL+ +SG V  P   E
Sbjct: 211 QSGAWGKPTVVNNVETLCNVPSIVLHGADWYQGLSQGKSGDGGTKLYGVSGKVKRPGLWE 270

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M     EL+E+  G        L   +PGG S   L    +  A +D+D +   GS L
Sbjct: 271 LPMGTPATELMERAGGM--REGHTLKTWLPGGGSTGFLLPEHLELA-LDFDTIGNAGSRL 327

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT  + V+     ++     L  F+  ESCG CTPCR+G  W +++++ L  G  ++ +I
Sbjct: 328 GTGLIAVVADDQSVVSLTRNLEEFFARESCGWCTPCRDGLPWSVKLLQALEAGEGERGDI 387

Query: 376 DLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           DLL  ++ ++  GRT CA    AA P+   I  FR   E  + +  
Sbjct: 388 DLLESLAVDLGPGRTFCAHAPGAAMPLASAIHYFRAEFERGVTRGQ 433


>gi|226939218|ref|YP_002794289.1| NADH dehydrogenase [Laribacter hongkongensis HLHK9]
 gi|226714142|gb|ACO73280.1| NADH dehydrogenase [Laribacter hongkongensis HLHK9]
          Length = 433

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/414 (33%), Positives = 221/414 (53%), Gaps = 5/414 (1%)

Query: 1   MLTDQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+     GL    SLSD ++ G +  + + L  G D  +  ++ SGLRGRGGA 
Sbjct: 17  FLARQQRLVFARAGLTRPLSLSDYLATGGYAGLQRWLSTGADAFLQALETSGLRGRGGAA 76

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +KW  + +  +    ++V NADE + GT  DR ++  +P+ LIEG  +A+  +GA 
Sbjct: 77  FPAHIKWQGVRRAHA-VEKFVVCNADEGDSGTFADRMLLEGDPYALIEGITLAALTVGAR 135

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             ++Y+R E+ R  E ++ A+ +   +G LG N    G   ++ V  GAGAYICGEE+AL
Sbjct: 136 QGYVYIRSEYPRAIEHMREAIAQARQAGYLGDNILGNGQAFELEVRCGAGAYICGEESAL 195

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LES+EG++G  R +PP P+  GL+G PT V+NV ++A +P I R G   +S +G E +RG
Sbjct: 196 LESIEGRRGMVRPRPPLPSEAGLFGQPTLVHNVMTLAAIPFIAREGGEAFSRYGSERSRG 255

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T    ++G++     VE +  +   EL+    GG   G  ++ AV  GG     +     
Sbjct: 256 TLAVQLAGNLRQTGLVETAFGLRLSELLHDFGGGSASG-RSIKAVQIGGPLGAWVAPAD- 313

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              ++DY+     G+ +G   V+ +D   D+         F   ESCG+CTPCR GT   
Sbjct: 314 FDLLLDYEAFVARGALVGHGGVVAVDDRADLADLARLALHFCAEESCGKCTPCRVGTVRA 373

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +++R+  G+    +++LL E+ + +   ++CALG    +P+   ++ F    
Sbjct: 374 GELVDRIRTGLHPDDDVELLTELCQTMRDASLCALGGMVHFPVLSALRQFPRDF 427


>gi|119385582|ref|YP_916637.1| NADH dehydrogenase (quinone) [Paracoccus denitrificans PD1222]
 gi|119376177|gb|ABL70941.1| formate dehydrogenase beta subunit [Paracoccus denitrificans
           PD1222]
          Length = 513

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 144/413 (34%), Positives = 218/413 (52%), Gaps = 7/413 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           +  Q R+ F  +  +   S+S+  + G    + + +E G + I+ EV  SGLRGRGGAGF
Sbjct: 89  MKAQTRLTFARVGVIDPLSVSEYEAHGGLVGLSRAIEIGPERIVEEVTESGLRGRGGAGF 148

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  +    +    Y+V NADE + G+  DR +M  +P  LIEG  IA  A GA  
Sbjct: 149 PTGIKWKTVAGAKA-ARKYIVCNADEGDSGSFADRMLMEGDPLVLIEGMAIAGIATGAVQ 207

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLG-SNSKLGYDVDIIVHHGAGAYICGEETALL 179
            ++Y+R E+      ++AA+ +   +G+LG S     +  D+ V  GAGAY+CGEET+LL
Sbjct: 208 GYVYIRSEYPDAIRLMEAAIGKARQAGILGQSVLGSAHAYDMEVRVGAGAYVCGEETSLL 267

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G  R KPP PA  G  G PT VNNV S+A VP IL  G + Y+  G   ++GT
Sbjct: 268 NSLEGKRGVVRAKPPIPALEGFLGRPTVVNNVISLASVPWILSHGGAEYAKLGIGRSKGT 327

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V Y    E +  ++  ++I +  GG   G   + A   GG     +P     
Sbjct: 328 IPIQIAGNVKYGGLFEAAFGMSLGQIINEVGGGTASGRP-VKAAQVGGPLGSYIP-HWNF 385

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
                Y+ L      LG A + V D + D++K       F   ESCG+CTPCR G+   +
Sbjct: 386 DVPFGYEELAGKEGLLGHAGITVFDDTADMLKLARFAMEFCAVESCGKCTPCRIGSIRGV 445

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++R+ +G   +  I +L ++   ++  ++CALG  A +P+   + +F    
Sbjct: 446 ETIDRIAQG--DETGIAILTDLCNTMKWGSLCALGGFAPFPVMSALTHFPDDF 496


>gi|297569386|ref|YP_003690730.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2]
 gi|296925301|gb|ADH86111.1| NADH dehydrogenase (quinone) [Desulfurivibrio alkaliphilus AHT2]
          Length = 601

 Score =  405 bits (1042), Expect = e-111,   Method: Composition-based stats.
 Identities = 145/442 (32%), Positives = 237/442 (53%), Gaps = 35/442 (7%)

Query: 1   MLTDQDRI----FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGR 55
               Q ++    F N   +  + +   ++ G +  +   L  +    II+E+  SGLRGR
Sbjct: 140 FFRRQVKVVLEQFEN---IDPERIESYLAAGGYRALLDCLHHRRPVEIIDEITRSGLRGR 196

Query: 56  GGAGFSTGMKWSFMPKV----------------------CSDRPHYLVVNADESEPGTCK 93
           GG G+  G+KWS + K                             Y++ NADE +PG   
Sbjct: 197 GGGGYPVGLKWSTVAKAGAFVPQAGRSSRQSAGATAADRPDGPRKYVICNADEGDPGAFM 256

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           DR ++   PH ++EG  IA++A+GA   ++YVR E+    E L+ A+ +    GLLG N 
Sbjct: 257 DRSVLECAPHRVLEGMAIAAYAVGADFGYLYVRAEYPLAVERLRKAIVQAEKRGLLGRNI 316

Query: 154 K-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
               ++  + +  GAGA++CGEETALL S+EG++GQPR +PP+PA  GL+GCPT +NNVE
Sbjct: 317 GGSAFNFQVEIRLGAGAFVCGEETALLASIEGRRGQPRPRPPYPAEHGLWGCPTLINNVE 376

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           ++A V  I+ RGA W++  G E ++GTK+F+++G +     +E  M I+  E++ +   G
Sbjct: 377 TLANVAAIINRGADWFAALGTEKSKGTKVFALAGKIKNTGLIEVPMGISIHEIVHEMGSG 436

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
                  + AV  GG S  C+PA       +DY+ L+  GS +G+  +I+MD    ++  
Sbjct: 437 ---EVGGIKAVQTGGPSGGCIPAEHFH-LPVDYESLQAEGSIMGSGGMIIMDEGAAMVDV 492

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
                 F   ESCG+C PCR GT  ++ ++E++ +G     ++  L E+   ++  ++C 
Sbjct: 493 ARFFMEFCVEESCGKCAPCRVGTTQVLLLLEKIGRGEGTAADLGQLEELCHLLQQTSLCG 552

Query: 393 LGDAAAWPIQGLIKNFRPLIEE 414
           LG +AA P+   ++ FR   E+
Sbjct: 553 LGQSAANPVLSTLRFFRREYEQ 574


>gi|294678552|ref|YP_003579167.1| NAD-dependent formate dehydrogenase subunit beta [Rhodobacter
           capsulatus SB 1003]
 gi|294477372|gb|ADE86760.1| NAD-dependent formate dehydrogenase, beta subunit [Rhodobacter
           capsulatus SB 1003]
          Length = 500

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 146/413 (35%), Positives = 210/413 (50%), Gaps = 13/413 (3%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q R+ F     ++  SL+   +   W  + K L+     ++ EV ASGLRGRGGAG
Sbjct: 92  FFKRQTRLTFARCGRIEPLSLAQFAAAEGWAGLRKALKMTPAEVVEEVLASGLRGRGGAG 151

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    +D   Y+V N DE + G+  DR ++  +P  L+EG  IA  A+GA 
Sbjct: 152 FPTGIKWRTVAAAQAD-QKYIVCNVDEGDSGSFADRMLIEGDPFCLVEGMAIAGHAVGAT 210

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             ++Y+R E+      ++AA+                   ++ V  GAGAY+CGEET+LL
Sbjct: 211 RGYVYIRSEYPDAIAVMRAAIAMAKP-------FLAEAGFEMEVRVGAGAYVCGEETSLL 263

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G  R KPP PA  GL+G PT VNN+ S+A VP I+  GA  Y  FG + +RGT
Sbjct: 264 NSLEGKRGTVRAKPPLPALKGLFGKPTVVNNLLSLAAVPWIIAHGAKAYESFGMDRSRGT 323

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I G+V      E    IT  EL+E  CGG   G   + AV  GG      P     
Sbjct: 324 IPLQIGGNVKRGGLFETGFGITLGELVEDICGGTASGRP-VKAVQVGGPLGAYHPVSDYH 382

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
                Y+     G  +G A ++V D + D++K       F   ESCG CTPCR G    +
Sbjct: 383 -LPFCYEQFAGQGGLVGHAGLVVHDDTADMLKLARFAMEFCAIESCGTCTPCRIGAVRGV 441

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+  G A    + LL ++ + ++  ++CALG    +P+Q  I++F    
Sbjct: 442 EVIDRIAAGDASA--MPLLDDLCQTMKLGSLCALGGFTPYPVQSAIRHFPADF 492


>gi|221201245|ref|ZP_03574285.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD2M]
 gi|221206301|ref|ZP_03579314.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD2]
 gi|221173610|gb|EEE06044.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD2]
 gi|221179095|gb|EEE11502.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD2M]
          Length = 525

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGITDPLSIDDYLKYDGLVGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQASA-KQKYVVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG +     +  ++ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIARAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ Y   VE +  +T  EL+    GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATG-HPARAAQVGGPLGTYLP-EHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R+I LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|221213582|ref|ZP_03586556.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD1]
 gi|221166371|gb|EED98843.1| formate dehydrogenase, NAD-dependent, beta subunit [Burkholderia
           multivorans CGD1]
          Length = 525

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGITDPLSIDDYLKYDGLVGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQASA-KQKYVVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG +     +  ++ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIARAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ Y   VE +  +T  EL+    GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPA-RAAQVGGPLGTYLP-EHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R+I LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|160936612|ref|ZP_02083979.1| hypothetical protein CLOBOL_01502 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440403|gb|EDP18148.1| hypothetical protein CLOBOL_01502 [Clostridium bolteae ATCC
           BAA-613]
          Length = 447

 Score =  405 bits (1041), Expect = e-111,   Method: Composition-based stats.
 Identities = 148/420 (35%), Positives = 233/420 (55%), Gaps = 8/420 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +   +  +   S+ +  + G +  + K L   ++ I+ E+  S L+GRGGAG+  G KW 
Sbjct: 14  LLRRVGRMDPVSVPEFEALGGFSGIRKALSMEKEEILEEISRSNLKGRGGAGYPAGRKWK 73

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
            + ++  D   Y+V NADE EPGT KDR ++   P ++IEG +IA +  G+   +IY+RG
Sbjct: 74  SLYRIEGD-TKYIVCNADEGEPGTFKDRVLLEETPLSVIEGMLIAGYVFGSKQGYIYIRG 132

Query: 128 EFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           E+ R ++  + A++    +G LG +     G+D  I V  G GAY+CGE +A+L S+EGK
Sbjct: 133 EYRRIQKIFETALENAEDAGYLGKDILGVPGFDYSITVVSGGGAYVCGENSAMLNSIEGK 192

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PR+KPP  A VGLYG PT VNNVE++  VP IL  G+  +  +G   + GTKL SIS
Sbjct: 193 TGRPRIKPPHLAEVGLYGKPTLVNNVETLCCVPIILEEGSQKFLSYGTTESGGTKLVSIS 252

Query: 246 GHVNYPCTVEESMSITFDELI--EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           GHV      E  + I+  +LI  EK+ GG   G         GG S P     Q+     
Sbjct: 253 GHVKNRGVFEVGLGISLRQLIMDEKYGGGTSTGRKP-GFFHMGGQSGPIGFPEQL-DTPY 310

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
            Y+ L   G  +G+ A++V+D S  I++ I ++  F+ HESCG+CTPCR GT  ++ ++ 
Sbjct: 311 TYETLAPKGLAVGSGAIVVLDDSVCIVEYIQKVFEFFVHESCGKCTPCRLGTTRILELLT 370

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             V+G A+  +++ L  +++ +   + C LG +    +   +++ R   E  I+    C 
Sbjct: 371 DFVEGRAKDGDVERLEYMARQVSQLSACGLGQSVNVALMSALRHRRGDFEAHIN-GGACP 429


>gi|323649954|gb|ADX97063.1| mitochondrial NADH dehydrogenase flavoprotein 1 [Perca flavescens]
          Length = 341

 Score =  405 bits (1040), Expect = e-111,   Method: Composition-based stats.
 Identities = 221/337 (65%), Positives = 272/337 (80%), Gaps = 1/337 (0%)

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EPGTCKDR+IMR++PH L+EGC++A  A+GA  A+IY+RGEF  E  +LQ A++E YA
Sbjct: 1   EGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAAYIYIRGEFYNESSNLQVAINEAYA 60

Query: 146 SGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +GL+G +    GYD D+ V  GAGAYICGEETAL+ESLEGK+G+PRLKPPFPA+VG++GC
Sbjct: 61  AGLIGKDCCGSGYDFDVFVMRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGVFGC 120

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PTTV NVE++AV PTI RRG  W+ GFGRE N GTKLF+ISGHVN PCTVEE MSI   +
Sbjct: 121 PTTVANVETVAVAPTICRRGGPWFLGFGRERNSGTKLFNISGHVNNPCTVEEEMSIPLKD 180

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           LIE+H GG+RGGWDNLLAVIPGGSS P +P       +MD+DGL +  +GLGTAA+IVMD
Sbjct: 181 LIERHAGGVRGGWDNLLAVIPGGSSTPLIPKNVCEEVLMDFDGLIQAQTGLGTAALIVMD 240

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
           +STDII+AI RL  FYKHESCGQCTPCREG  WM  +M R VKG A+  EID+++E+SK 
Sbjct: 241 KSTDIIRAIARLIEFYKHESCGQCTPCREGVDWMNNMMWRFVKGDARPSEIDMIWELSKQ 300

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           IEG TICALGD AAWP+QGLI++FRP++E RI ++ +
Sbjct: 301 IEGHTICALGDGAAWPVQGLIRHFRPVMESRIAEHQQ 337


>gi|289751828|ref|ZP_06511206.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           T92]
 gi|289692415|gb|EFD59844.1| NADH dehydrogenase subunit I F nuoF [Mycobacterium tuberculosis
           T92]
          Length = 380

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 184/364 (50%), Positives = 240/364 (65%), Gaps = 10/364 (2%)

Query: 16  QGKSLSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
           +  +L+          +  + K L    D +I+ VK SGLRGRGGAGF+TG KWSF+P+ 
Sbjct: 20  ESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQG 79

Query: 73  CSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            +    +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI AH AF+YVRGE 
Sbjct: 80  DTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEV 139

Query: 130 IRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +     L  AV E YA+G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQ
Sbjct: 140 VPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQ 199

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PRL+PPFPA  GLYGCPT +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV
Sbjct: 200 PRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHV 259

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P   E  + IT  EL+  + GG+R G   L    PGGSS P L    +    +DY+G+
Sbjct: 260 TRPGQYEAPLGITLRELL-DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGV 316

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
              GS LGT A+ + D +T +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G
Sbjct: 317 GAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETG 376

Query: 369 IAQK 372
               
Sbjct: 377 RGSP 380


>gi|161525535|ref|YP_001580547.1| NADH dehydrogenase (quinone) [Burkholderia multivorans ATCC 17616]
 gi|189349737|ref|YP_001945365.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
 gi|160342964|gb|ABX16050.1| NADH dehydrogenase (quinone) [Burkholderia multivorans ATCC 17616]
 gi|189333759|dbj|BAG42829.1| NADH dehydrogenase [Burkholderia multivorans ATCC 17616]
          Length = 525

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 141/413 (34%), Positives = 216/413 (52%), Gaps = 5/413 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGITDPLSIDDYLKYDGLVGLKNALALDGDAACETLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQASA-KQKYIVCNADEGDSGTFSDRLLMECDPYCLIEGMIIAGVATGATV 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            +IYVR E+     +L+AA+     +G LG +     +  ++ V  GAG+Y+CGEETALL
Sbjct: 218 GYIYVRSEYPHAIATLEAAIARAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y  +G   +RGT
Sbjct: 278 ESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFYRDYGMGRSRGT 337

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++ Y   VE +  +T  EL+    GG   G     A   GG     LP     
Sbjct: 338 LPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPA-RAAQVGGPLGTYLP-EHQW 395

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +DY+    +G+ +G   +++ D ++++ +       F   ESCG+CTPCR G+   +
Sbjct: 396 DVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKCTPCRIGSTRGV 455

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             + R+  G   +R+I LL ++   +   ++CA+G    +P+   + +F    
Sbjct: 456 ETIARIRGGDTSERQITLLRDLCDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 508


>gi|318041123|ref|ZP_07973079.1| NADH dehydrogenase (quinone) [Synechococcus sp. CB0101]
          Length = 521

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 149/417 (35%), Positives = 235/417 (56%), Gaps = 13/417 (3%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
            L  Q R +      +  +SL+D+++ G W  + ++LE+     +I  V+ SGLRGRGGA
Sbjct: 106 FLNLQRRLVLGRCGVVDPESLADALAAGAWQQLPRVLEQNDPPAVIEIVRRSGLRGRGGA 165

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ +          +V NADE +PG   DR +M  +PHTL+EG  IA+FA+GA
Sbjct: 166 GYPTGLKWATVA-AMPGSQKVVVCNADEGDPGAFMDRTLMEGDPHTLLEGMAIAAFAVGA 224

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETA 177
              FIYVR E+    E L+ A+      G LG      G+  +I +  GAGAY+CGEETA
Sbjct: 225 QQGFIYVRAEYPLAIERLRTAISAAEQQGWLGRGIGGSGFSFEIELRVGAGAYVCGEETA 284

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PP+PA  G++G PT +NNVE+   +P +L  G   Y         
Sbjct: 285 LIHSIEGRRGVPRPRPPYPAEHGVFGLPTLINNVETFGNIPALLELGVEAYG-------T 337

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++GHV     +E  M  +   ++E   GG   G   + AV  GG S  C+PA  
Sbjct: 338 GTKVFSLTGHVQRSGVLEVPMGTSLRTIVETMGGGAPQG-RQIKAVQTGGPSGGCVPASA 396

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  + +DYD LK +G+ +G+  ++V+D +T+++        F + ESCG+C PCR GT  
Sbjct: 397 L-DSPVDYDSLKALGTIMGSGGMVVLDDTTNMVDIAAFFIAFSREESCGKCIPCRSGTVQ 455

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           +  ++ +L++   Q  +++ L  +   +   ++C LG +A  P+   +++FR     
Sbjct: 456 LEMLLRKLLERRGQVADLEQLEALCHTVADASLCGLGQSAPKPVLSTLRHFRGDYLA 512


>gi|227326163|ref|ZP_03830187.1| NADH dehydrogenase I subunit F [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 431

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/351 (43%), Positives = 217/351 (61%), Gaps = 6/351 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D +++ VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 23  QPVWLDEYRSKNGYVAAQKALTGMAQDEVVSLVKDAGLKGRGGAGFSTGLKWSLMPKDES 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M  EPH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 83  MNIRYLLCNADEMEPGTYKDRLLMEQEPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A++E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 143 HLRRAIEEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP I+  GA+WY G   G+  + GTKL   SG V  P
Sbjct: 203 PFPASAGVWGKPTCVNNVETLCNVPAIIEHGAAWYQGLSAGKSKDAGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E + GG+R G   L A  PGG+    L    +    MD++ + + 
Sbjct: 263 GLWELPFGTTAREILEDYAGGMRDGLK-LKAWQPGGAGTDFLTESHL-DLPMDFEHIAKA 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           GS +GTA  + +D   +++     L  F+  ESCG CTPCR+G  W ++++
Sbjct: 321 GSRMGTALAMAVDHEINMVSLTRNLEEFFSRESCGWCTPCRDGLPWSVKIL 371


>gi|317970222|ref|ZP_07971612.1| NADH dehydrogenase (quinone) [Synechococcus sp. CB0205]
          Length = 498

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/424 (36%), Positives = 243/424 (57%), Gaps = 13/424 (3%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGA 58
            L  Q R +      +  +SL ++ + G +  + ++L++     II  V+ SGLRGRGGA
Sbjct: 84  FLALQRRLVLAQCGRIDPESLEEAEAAGAYLQLRRVLQENDPLAIIERVRRSGLRGRGGA 143

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           G+ TG+KW+ +  +  D    +V NADE +PG   DR +M  +PHTL+EG VIA+FA+GA
Sbjct: 144 GYPTGLKWAAVAAMPGD-SKVVVCNADEGDPGAFMDRTVMEGDPHTLLEGMVIAAFAVGA 202

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETA 177
              +IYVRGE+    E L+  +++   SG LG +    G+  D+ +  GAGAY+CGEETA
Sbjct: 203 ERGWIYVRGEYPLAIERLRRGIEQARQSGWLGGSVGASGFRFDLELRVGAGAYVCGEETA 262

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG++G PR +PPFPA  G++G PT +NNVE+ A +P +LR G   Y         
Sbjct: 263 LIHSIEGRRGVPRPRPPFPAEQGVHGFPTLINNVETFANIPALLRLGLEAYGQ------- 315

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTK+FS++GHV     VE  M  +   ++E   GG +     + AV  GG S  C+PA  
Sbjct: 316 GTKVFSLTGHVQRSGVVEVPMGTSLRTIVETMAGGPK-NGHQIKAVQTGGPSGGCVPASH 374

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +    +DYD L+E+G+ +G+  ++VMD +TD++        F + ESCG+C PCR GT  
Sbjct: 375 L-DTPVDYDSLRELGTIMGSGGMVVMDDTTDMVDLAAFFMAFCREESCGKCIPCRCGTVQ 433

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  ++ +L+ G     ++  L  +   ++  ++C LG  A  P+   ++++R      + 
Sbjct: 434 LEILLRKLLAGQGTGSDLSQLESLCHTVKEASLCGLGQNAPNPVLSSLRHYRGDFLALLQ 493

Query: 418 QYHR 421
           +  R
Sbjct: 494 RDRR 497


>gi|307292624|ref|ZP_07572470.1| NADH dehydrogenase (quinone) [Sphingobium chlorophenolicum L-1]
 gi|306880690|gb|EFN11906.1| NADH dehydrogenase (quinone) [Sphingobium chlorophenolicum L-1]
          Length = 526

 Score =  402 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 151/443 (34%), Positives = 209/443 (47%), Gaps = 43/443 (9%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q R  F     +   SL D      W  +D         +++ VKASGLRGRGGAG
Sbjct: 85  FFAGQQRFTFARCGIIDPLSLQDYADHDGWRGLDAARAMPPQAVVDAVKASGLRGRGGAG 144

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    SD   ++V NADE + GT  DR +M  +P  LIEG  IA  A+GA 
Sbjct: 145 FPTGIKWQTVLDAVSD-AKFIVCNADEGDSGTFADRMLMEGDPFCLIEGMAIAGHAVGAG 203

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+     ++Q A+                    + V  GAGAY+CGEETALL
Sbjct: 204 HGYIYIRSEYPFAIAAMQEAIALSAERI---------APFTLEVRVGAGAYVCGEETALL 254

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +S+EGK+GQ R KPP PA  GL+G PT +NNV S+A VP IL +GA  Y+  G   +RGT
Sbjct: 255 DSIEGKRGQVRAKPPLPALAGLFGQPTVINNVLSLAAVPFILAKGAEAYAAVGFGRSRGT 314

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V +    E    IT  EL+    GG   G   + AV  GG      P G M 
Sbjct: 315 MPVQLAGNVKHGGLYEIGFGITLGELVNGIGGGTASGRP-VRAVQVGGPLGAYFPPG-MF 372

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+   + G  +G A + V D S D+         F   ESCG+CTPCR G+   +
Sbjct: 373 DLPFDYEAFAQAGGLIGHAGITVFDDSLDMAHMARFAMEFCSVESCGKCTPCRIGSTRGV 432

Query: 360 RVMERLVKGI----------------------AQKREID--------LLYEVSKNIEGRT 389
            V++R++ G                            ID        LL ++   ++  +
Sbjct: 433 EVLDRIIAGRDAPAPVPTDQPWEGYLKTALNSRTPDRIDTGLEAQTTLLRDLCDTMKYGS 492

Query: 390 ICALGDAAAWPIQGLIKNFRPLI 412
           +CALG    +P+   + +F    
Sbjct: 493 LCALGGFTPYPVLSALDHFPEDF 515


>gi|307718325|ref|YP_003873857.1| NADH-quinone oxidoreductase subunit 1 [Spirochaeta thermophila DSM
           6192]
 gi|306532050|gb|ADN01584.1| NADH-quinone oxidoreductase subunit 1 [Spirochaeta thermophila DSM
           6192]
          Length = 418

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 153/407 (37%), Positives = 224/407 (55%), Gaps = 9/407 (2%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
                +   +SRG +  + + L +    +I EVK+SGLRGRGGAGF TG+KW  + +   
Sbjct: 14  RDAFDMEAYISRGGFMGLRQALARPPAKVIAEVKSSGLRGRGGAGFPTGVKWESVQR--- 70

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            +  Y+V NADE EPGT KDR IM H P+ LIEG  IA +A+GA   FIY+RGE+    +
Sbjct: 71  HKEPYVVANADEGEPGTFKDRYIMEHAPYLLIEGMTIAGYAVGARRGFIYIRGEYPAIAK 130

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  AV++      LG       Y  DI +  G G+Y+ G+ETALL SL G +G P +KP
Sbjct: 131 GLIKAVEDARKHHFLGEKILGTDYSFDISLRMGGGSYVVGDETALLNSLMGNRGYPMMKP 190

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P+P   GL+G PT VNNVE++A VP +  +GASW++  G E++ G KLF +SG V+ P  
Sbjct: 191 PYPTEEGLWGHPTLVNNVETLAYVPAVFTKGASWFTQIGPEHSPGLKLFCVSGDVHAPGL 250

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  M +   EL+E   G        L AV  GG++ P     +     +DYD L+  G 
Sbjct: 251 YELPMGVPLHELLEAAGG----VKGRLKAVQIGGTAGPVY-DDRALSFPLDYDSLRAEGG 305

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LG+ AV+VM+ + ++ + +   + F+  ESCGQC PCR GT  +  +   ++ G  ++ 
Sbjct: 306 ALGSGAVVVMNHTRNMAEFLEVTTRFFSEESCGQCFPCRYGTRQLEFMARNIMMGKGKEE 365

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            +D + E+   +   + C  G + A P+  ++  F   I   I    
Sbjct: 366 YLDEMREIVTTMSVASFCPFGKSVALPVGNVLDLFGDEIRTFIAHQR 412


>gi|126640814|ref|YP_001083798.1| NADH dehydrogenase I chain F [Acinetobacter baumannii ATCC 17978]
          Length = 395

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/389 (40%), Positives = 225/389 (57%), Gaps = 14/389 (3%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
                ++  +KA+ ++GRGGAGF  G+KWS M       P YL+ NADE EPGT KDR +
Sbjct: 1   MKPAEVLEVIKAATVKGRGGAGFPAGIKWSLMAPNDGG-PRYLICNADEMEPGTFKDRLL 59

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156
           M   PH LIEG +IA + + A   +I++RGE+I   + L  A+++  A G LG N    G
Sbjct: 60  MEKLPHQLIEGMLIAGYTLEATQGYIFIRGEYIEAAQYLNEALEQIRAKGYLGDNILGSG 119

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           ++ ++ VH GAG YICGEETAL+ SLEG++  PR KPPFP   G +G PT VNNVE+   
Sbjct: 120 WNFELHVHTGAGRYICGEETALINSLEGRRANPRTKPPFPQVAGAWGRPTIVNNVETYNN 179

Query: 217 VPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           +P I+ RG  WY G   G+  + GTK++  SG V +P   E     T  E+IE+H GG+R
Sbjct: 180 LPAIMLRGPEWYIGLSAGKSKDPGTKIYGASGKVKFPGLWELPFGTTAREVIEEHAGGMR 239

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
            G   L A +PGG+S   LPA  +    MD + + + GS LGT  ++V+D +  ++    
Sbjct: 240 DGLK-LKAWLPGGASTDFLPADTI-DLPMDAETIMKAGSRLGTCLLMVVDETQCMVSLTR 297

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE-GRTICAL 393
            L  F+  ESCG CTPCR+G  W ++ ++ L  G  +K +ID L E+++ +  G+T CA 
Sbjct: 298 NLEEFFARESCGWCTPCRDGLPWAVKALKALETGEGKKEDIDHLQELTRKLWIGKTFCAH 357

Query: 394 GDAAAWPIQG----LIKNFRPLIEERIDQ 418
                W         +K+FR   E ++  
Sbjct: 358 ATRCEW---SRLWVALKHFRSEFEAKVTD 383


>gi|255019943|ref|ZP_05292017.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970602|gb|EET28090.1| NADH-ubiquinone oxidoreductase chain F [Acidithiobacillus caldus
           ATCC 51756]
          Length = 417

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 146/412 (35%), Positives = 221/412 (53%), Gaps = 7/412 (1%)

Query: 13  YGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
                  L      G +  + + L+     +I EV+ SGLRG GGAGF TG+KW     V
Sbjct: 9   GAEDPADLDRYRDDGGYTGLQRALDMAPAELIAEVERSGLRGCGGAGFPTGVKWRL-RGV 67

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            +  P YLV N DE+EPG+ KDR ++   PH ++EG +IA+ A+G   A +++RGE+   
Sbjct: 68  DAPTPRYLVCNLDETEPGSFKDRALLLGAPHQILEGMLIAAHALGVQYAVVFIRGEYAEG 127

Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
              L+ A+    A+GLL      G  + + +H   G YICGE++A+L ++EG++  PR K
Sbjct: 128 AAVLERALAAVRAAGLLELP---GGALRLDIHLSLGRYICGEDSAILNAIEGRRPNPRKK 184

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PP  A  GL+  PTTVNN E+ A +P ILR G   +   G  +  GTKL+++SG V  P 
Sbjct: 185 PPHIAQQGLWLQPTTVNNAETFAQLPGILRLGVDAWRALGVHDGVGTKLYNVSGPVRRPG 244

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  M  T  E++E H GG       +  V+PGGSS P +   +     M +D + ++G
Sbjct: 245 VFELPMGTTLAEILETHAGG-ALPGRRIRGVLPGGSSTPFVLPDKFH-TPMHFDAMAKIG 302

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LGT  VIV+D     +  +   + F+  ESCG CTPCREG  ++  ++ER+ +G+   
Sbjct: 303 SRLGTGGVIVLDDGHCPVDFLLATTRFFARESCGFCTPCREGLPYIQWLLERIEQGLGTM 362

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            +ID +  +   I   + CAL   A  P+   +++F       + + H C +
Sbjct: 363 ADIDKIRSLGAEIAPNSFCALAPGALMPVLSGLESFHEDFLAHVRE-HACPY 413


>gi|315185457|gb|EFU19228.1| NADH dehydrogenase (quinone) [Spirochaeta thermophila DSM 6578]
          Length = 418

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 154/406 (37%), Positives = 224/406 (55%), Gaps = 9/406 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               L   +SRG +  + + L +    +I EVKASGLRGRGGAGF TG+KW  + +    
Sbjct: 15  DALDLEACLSRGGFMGLRQALARTPAKVIAEVKASGLRGRGGAGFPTGVKWESVQR---H 71

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +  Y+V NADE EPGT KDR IM H P+ LIEG  IA +A+GA   FIY+RGE+    + 
Sbjct: 72  KEPYVVANADEGEPGTFKDRYIMEHAPYLLIEGMTIAGYAVGARRGFIYIRGEYPAIAKG 131

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           L  AV+E      LG       Y  DI +  G G+Y+ G+ETALL SL G +G P +KPP
Sbjct: 132 LIKAVEEARKHHFLGEKILGSDYSFDISIKLGGGSYVVGDETALLNSLMGNRGYPMMKPP 191

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           +P   GL+G PT VNNVE++A VP +  +GASW++  G E++ G KLF +SG V+ P   
Sbjct: 192 YPTEEGLWGHPTLVNNVETLAYVPAVFTKGASWFTQIGPEHSPGLKLFCVSGDVHAPGLY 251

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M +   +L+E   G        L AV  GG++ P     +     +DYD L+  G  
Sbjct: 252 ELPMGVPLHDLLEAAGG----VKGTLKAVQIGGTAGPVY-DDRALSFPLDYDSLRAEGGA 306

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LG+ AV+VM+ + ++ + +   + F+  ESCGQC PCR GT  +  +   ++ G  ++  
Sbjct: 307 LGSGAVVVMNHTRNMAEFLEVTTRFFSEESCGQCFPCRYGTRQLEFMARNIMMGKGKEEY 366

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +D + ++   +   + C  G + A P+  ++  F   I   I    
Sbjct: 367 LDEMRDIVATMTVASFCPFGKSVALPVGNVLDLFGDEIRTFIAHQR 412


>gi|160897303|ref|YP_001562885.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Delftia acidovorans SPH-1]
 gi|160362887|gb|ABX34500.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Delftia
           acidovorans SPH-1]
          Length = 727

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 145/420 (34%), Positives = 228/420 (54%), Gaps = 12/420 (2%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q+R+ F  +  +   +L+D  + G W  +++        I+ EV  SGLRGRGGA F
Sbjct: 300 LARQERLTFARVGVIDPLNLADYAAHGGWQGLERAARMEPAAIVQEVLDSGLRGRGGAAF 359

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  +    +    Y+  NADE + GT  DR +M  +P+TLIEG  IA  A+GA  
Sbjct: 360 PAGIKWKTVA-AAAGPQKYIACNADEGDSGTFADRLLMEGDPYTLIEGMAIAGLAVGATQ 418

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             +YVR E+     +L+ A+    A+G LG + +  G    + V  GAG+Y+CGEETA+L
Sbjct: 419 GLVYVRSEYPHAVATLREAIARAEAAGWLGRDVAGSGRAFHMEVRKGAGSYVCGEETAML 478

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EG++G  R KPP PA  GL+G PT +NNV ++A VP IL RGA++Y GFG   +RGT
Sbjct: 479 ESIEGRRGIVRAKPPLPAIEGLWGRPTVINNVITLATVPMILARGAAFYQGFGMGRSRGT 538

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
             F ++G++     VE++  ++  EL+E   GG   G   + AV  GG     +      
Sbjct: 539 LPFQLAGNIARGGLVEKAFGLSLRELVEDFGGGTATG-RTVKAVQVGGPLGSYVAPAD-W 596

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
            A +DY+     G+ +G   ++V D + D+ +       F   ESCG+CTPCR G+   +
Sbjct: 597 DAPLDYEAYAAKGNVVGHGGIVVHDDTADMAQLARYAMEFCAIESCGKCTPCRIGSTRGV 656

Query: 360 RVMERLVKGIAQKR-------EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            V++R+V+  A          ++ LL  +   ++  ++CA+G    +P++  + ++    
Sbjct: 657 EVIDRIVRAGADPAAHAGHAGQVALLESLCDTMQHGSMCAMGGMTPYPVRSALNHYSQDF 716


>gi|148701042|gb|EDL32989.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_a [Mus
           musculus]
          Length = 334

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 211/325 (64%), Positives = 259/325 (79%), Gaps = 1/325 (0%)

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156
           MRH+PH L+EGC++   A+GA  A+IY+RGEF  E  +LQ A+ E Y +GL+G N+    
Sbjct: 1   MRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSD 60

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           YD D+ V  GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV
Sbjct: 61  YDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV 120

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GG
Sbjct: 121 SPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGG 180

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
           WDNLLAVIPGGSS P +P       +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL
Sbjct: 181 WDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARL 240

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
             FYKHESCGQCTPCREG  WM +VM R VKG A+  EID L+E+SK IEG TICALGD 
Sbjct: 241 IEFYKHESCGQCTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDG 300

Query: 397 AAWPIQGLIKNFRPLIEERIDQYHR 421
           AAWP+QGLI++FRP +E+R+ ++ +
Sbjct: 301 AAWPVQGLIRHFRPELEDRMQRFAQ 325


>gi|149061921|gb|EDM12344.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, isoform CRA_b
           [Rattus norvegicus]
          Length = 334

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 209/323 (64%), Positives = 257/323 (79%), Gaps = 1/323 (0%)

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLG 156
           MRH+PH L+EGC++   A+GA  A+IY+RGEF  E  +LQ A+ E Y +GL+G N+    
Sbjct: 1   MRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSD 60

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           YD D+ V  GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV
Sbjct: 61  YDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAV 120

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
            PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GG
Sbjct: 121 SPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVLGG 180

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
           WDNLLAVIPGGSS P +P       +MD+D L +  +GLGTAAVIVM+ STDI+KAI RL
Sbjct: 181 WDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMNSSTDIVKAIARL 240

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
             FYKHESCGQCTPCREG  WM +VM R VKG A+  EID L+E+SK IEG TICALGD 
Sbjct: 241 IEFYKHESCGQCTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDG 300

Query: 397 AAWPIQGLIKNFRPLIEERIDQY 419
           AAWP+QGLI++FRP +E+R+ ++
Sbjct: 301 AAWPVQGLIRHFRPELEDRMQRF 323


>gi|307942122|ref|ZP_07657473.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4]
 gi|307774408|gb|EFO33618.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4]
          Length = 319

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 226/298 (75%), Positives = 255/298 (85%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML DQDRIFTN+YGL    L  +  RG WD+   +L+KGRDWII+E+KASGLRGRGGAGF
Sbjct: 1   MLKDQDRIFTNIYGLNDWGLEGAKKRGQWDDTKALLDKGRDWIIDEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RP YLVVNADESEPGTCKDR+I+RH+PHTL+EGC++A FA+GA  
Sbjct: 61  PTGLKWSFMPKESDGRPAYLVVNADESEPGTCKDREILRHDPHTLVEGCLVAGFAMGAIA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGEFIRERE LQAA+D+ Y +GL+G N+K GYD DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEFIRERERLQAAIDQAYDAGLIGKNNKNGYDFDIYVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV PTILRRG +W++G G+ NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVAPTILRRGGAWFAGLGKPNNTGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           LF ISGHVN PCTVEE + I F ELI++HCGGIRGGWDN LAVIPGGSSVPCL A Q+
Sbjct: 241 LFCISGHVNQPCTVEEELGIPFRELIDRHCGGIRGGWDNFLAVIPGGSSVPCLTAEQL 298


>gi|303248403|ref|ZP_07334663.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302490201|gb|EFL50119.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 454

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 143/420 (34%), Positives = 231/420 (55%), Gaps = 8/420 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N +  +  +  +  + G ++ +   + ++    +++ V AS LRGRGGAGF  G KW
Sbjct: 9   LFKNRHLGRPATFDEYRAGGGYEALYATIGKRTPQEVLDIVLASDLRGRGGAGFPAGRKW 68

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             +P      P Y+VVN DE EPGT KDR ++  +PH +IEG ++ ++A+ A     ++R
Sbjct: 69  QGIP-AGYVGPRYVVVNTDEMEPGTFKDRVLVNVDPHLVIEGILLCAYAVSATLGVCFIR 127

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
             +  +   L+         GLLG N     +  DI VH  AG YICGE +A ++++ G 
Sbjct: 128 PSYEADAVLLERETQVARDKGLLGKNILGTDFSFDIHVHRSAGRYICGEASAQIKAISGL 187

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNRGTKLFSI 244
           +  PR   P  +  GL+ CPT VNN+E++A +P I++ G  W+          GTKLFS+
Sbjct: 188 RPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGIVKNGPDWFKSLARTPTGAGTKLFSV 247

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG +  P   E  M I   E++ +H GG+      + AVIPGG+S P +P  ++    MD
Sbjct: 248 SGRIAKPDCYELPMGIPLREILFEHAGGMP-PGRAIKAVIPGGASTPFMP-ERLLDLPMD 305

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D +K+ G  LGTA+++V D++T ++ A   L  F+  ESCG CTPCREG  ++  ++  
Sbjct: 306 FDAMKKAGQRLGTASIMVFDQNTCLVGATLNLIEFFTRESCGWCTPCREGLPYVRHLLRL 365

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +  G  ++  I ++ +++K ++    CA    AA PI  L+ +F   + E + Q  +C F
Sbjct: 366 IESGEGKEEHIGMIRDMAKVMQ-SAYCAFAPGAAEPILSLLTHFEAEVREHLHQ-RKCPF 423


>gi|239905977|ref|YP_002952716.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
 gi|239795841|dbj|BAH74830.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
          Length = 454

 Score =  398 bits (1022), Expect = e-109,   Method: Composition-based stats.
 Identities = 137/420 (32%), Positives = 228/420 (54%), Gaps = 8/420 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N +  +  ++ + ++ G ++ +   + ++    ++  V  + LRGRGGAGF  G KW
Sbjct: 9   LFKNRHLGRPATIDEYLAGGGYEALRATIGQRTPAEVLQLVLDADLRGRGGAGFPAGRKW 68

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             +P        Y+V+N DE EPGT KDR ++  +PH +IEG ++ ++A+GA     ++R
Sbjct: 69  QGIP-ADHVGTRYVVINTDEMEPGTFKDRILVNVDPHLVIEGIILCAYAVGACEGVFFIR 127

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
             +  + + ++         G LG N     +  D+ VH  AG YICGE +A ++++ G 
Sbjct: 128 PSYEGDAKLIEQETQVARERGYLGKNILGTDFCFDVHVHRSAGRYICGEASAQIKAISGL 187

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR-GTKLFSI 244
           +  PR   P  +  GL+ CPT VNN+E++A +P I+R G +W+    R  +  GTKL+S+
Sbjct: 188 RPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGIVRNGPAWFKSLARSESGSGTKLYSV 247

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  + +T  ++I  H GG+         VIPGG+S P LP   +    MD
Sbjct: 248 SGQVARPGCYELPIGVTIRDIIFTHAGGMA-PGKTFKTVIPGGASTPYLPEA-LLDLEMD 305

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D +++ G   GTA+++V D+ T ++ A   L  F+  ESCG CTPCREG  ++  ++ R
Sbjct: 306 FDPMRKAGQRFGTASLMVFDQDTCLVGATLSLMEFFARESCGWCTPCREGIPYVRELLRR 365

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +  G   +  + +L E+   +     CA    AA P++GL+ +F   ++  I +  RC F
Sbjct: 366 IEGGEGTEEHVGMLQEMLPVL-DLAYCAFAPGAAEPLRGLLTHFMDEVQAHITE-KRCPF 423


>gi|71892262|ref|YP_277996.1| NADH dehydrogenase I chain F [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|71796368|gb|AAZ41119.1| NADH dehydrogenase I chain F [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 443

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 158/411 (38%), Positives = 235/411 (57%), Gaps = 7/411 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K +     + II  V+ SGLRGRGG GF TG+KWS M +  S
Sbjct: 23  QPVWLHEYKSKNGYRAAYKAITQMSPEEIIELVRNSGLRGRGGGGFFTGIKWSMMSQSKS 82

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YLV NADE EPGT KDR +M   PH L+EG +I+S+A+GA  A+I++R E+I   +
Sbjct: 83  VCSRYLVCNADEMEPGTYKDRFLMERLPHLLLEGILISSYALGASRAYIFLRYEYIIVAK 142

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  A+ E  + GL+G N     ++ ++ +H GAG YICGEETAL+ +LEG++  PR KP
Sbjct: 143 YLTRAIAEIKSIGLIGKNILNSEFNFELFLHTGAGRYICGEETALINALEGRRAVPRAKP 202

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFP++VGL+G PT VNNVE++  +P I+  G +WY     + +   GTKL   SG V  P
Sbjct: 203 PFPSHVGLWGKPTCVNNVETLCNIPGIIEHGTTWYRNISSKKSNDSGTKLMGFSGRVKNP 262

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T  E++E +  G+  G+ +L A  PGG S   L    +    MD+D +   
Sbjct: 263 GVWELPFGTTAREILEDYSRGMCPGF-SLKAWQPGGVSTDFLTTDHL-DTPMDFDKIAIS 320

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS  GT   I +D + +++  +  L  F+  ESCG CTPCR+G  W+++++  L     +
Sbjct: 321 GSRFGTGMAIAIDNTVNMVSLVRNLEEFFSRESCGWCTPCRDGLPWIVKLLISLENKDGR 380

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
             +I+LL ++   +  GRT CA    A  P++  +K F+   E  I ++++
Sbjct: 381 PGDIELLEKLCCVLGPGRTFCAHAPGAIEPLKSALKYFKNEFELGIHEFYK 431


>gi|256371185|ref|YP_003109009.1| NADH dehydrogenase (quinone) [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007769|gb|ACU53336.1| NADH dehydrogenase (quinone) [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 432

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 180/429 (41%), Positives = 246/429 (57%), Gaps = 18/429 (4%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSF 68
             L      +L   ++      + + L E   + +  EV  + L GRGGAGF  G KWS 
Sbjct: 9   ARLGYEDSYTLERFLATDGDAGLRRALLELTPEQVHAEVLEANLLGRGGAGFEAGRKWSM 68

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           + K       YLVVN DESEP T KD  ++  +PH L+EG  IA++AIGA  AFIY+RGE
Sbjct: 69  LRKAP---RRYLVVNGDESEPATFKDHLLVERDPHQLVEGATIAAYAIGASVAFIYLRGE 125

Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           F    E +Q A+++ YA G LG N    G+ +DI++  GAGAYICGEETALLESLEGK+G
Sbjct: 126 FALGLERVQQAINDAYARGALGRNIFGSGFSLDIVLQPGAGAYICGEETALLESLEGKRG 185

Query: 188 QPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
            PR+KPP FPA +GLYG PT VNNVE+++ +P I+R G + +   G   + GT++F++SG
Sbjct: 186 FPRIKPPYFPAVIGLYGAPTIVNNVETVSNLPWIVRHGGAAFRALGAGRSTGTRIFALSG 245

Query: 247 HVNYPCTVEESM-SITFDELIEKHCGGIRGGWDN-LLAVIPGGSSVPCLPAGQMRGAIMD 304
            V  P   E  M S+TF ELI     G     D  L A IPGG S P L    +    + 
Sbjct: 246 SVRRPGAFEVEMTSVTFRELIYGDAYGQGLEPDRELRAFIPGGVSSPWLFPEHL-DLPLG 304

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
            D + + GS LG+ ++IVMD     ++A WR++ F+  ESCGQCTPCREG  W+ +V+ R
Sbjct: 305 QDEVAKAGSMLGSGSIIVMDDGDCPVRAAWRIARFFARESCGQCTPCREGGTWIEQVLRR 364

Query: 365 LVKGIAQKREIDLLYEVSKNI--------EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           L  G  ++ ++DLL +   NI           TIC LG +    +   I+ FR +    I
Sbjct: 365 LELGYGREEDLDLLLDACDNISPGVTWPPAQTTICVLGPSIPPSVVAAIRRFRDVFLTHI 424

Query: 417 DQYHRCNFQ 425
            +  RC + 
Sbjct: 425 KE-ERCPYD 432


>gi|195402651|ref|XP_002059918.1| GJ15106 [Drosophila virilis]
 gi|194140784|gb|EDW57255.1| GJ15106 [Drosophila virilis]
          Length = 501

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 201/419 (47%), Positives = 264/419 (63%), Gaps = 3/419 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           LTD DRIF NLYG     L  + +RG W     +LE G  WI++EVK SGLRGRGG+G+ 
Sbjct: 78  LTDCDRIFQNLYGRLDWRLKGACARGDWYRTADLLEMGPQWIMDEVKRSGLRGRGGSGYY 137

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G KW  + KV S +   L++N  E EPGTCKDR+I+RHEPH +IEGC++A FA+G    
Sbjct: 138 AGSKWEQLQKVES-KDKILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGFAMGCEKC 196

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IYVR  F  E  +LQ A+ E Y  GL+G NS   G   +I V  G   Y+ GEETAL+ 
Sbjct: 197 IIYVRNRFYNEACNLQFALAEAYRYGLIGCNSCDTGIKFEIHVQRG-DRYLTGEETALVN 255

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK  +PR +PP+    G +  P+TV N ES+AVVPTILRRGA W++  GR  N GTK
Sbjct: 256 CLMGKLARPRKRPPYLHEKGYFDHPSTVINTESLAVVPTILRRGAKWFTSLGRNMNFGTK 315

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISGHV +PCTVEE MS+   ++IE H GG+ GGW+NLLAV PGG S P +       
Sbjct: 316 LFNISGHVLHPCTVEEEMSMPLRDIIEMHAGGVCGGWNNLLAVWPGGLSTPLIGRAAAEE 375

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MDYD L+  GS LGT  +IV+    D +  +     FY  ++C QCTPCR+G  W+  
Sbjct: 376 VLMDYDALEAKGSELGTGGIIVVCNDCDPLLVMQHTIEFYMKQTCKQCTPCRDGAIWLPE 435

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + +   +G +    ++ +  +SK + G TICAL D+ A   +GLI++F P IEERI +Y
Sbjct: 436 IFKNFTRGESVPHMMEFIEVISKTMTGTTICALSDSQANVARGLIQHFGPYIEERIIEY 494


>gi|294146591|ref|YP_003559257.1| NAD-dependent formate dehydrogenase beta subunit [Sphingobium
           japonicum UT26S]
 gi|292677008|dbj|BAI98525.1| NAD-dependent formate dehydrogenase beta subunit [Sphingobium
           japonicum UT26S]
          Length = 526

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 147/443 (33%), Positives = 207/443 (46%), Gaps = 43/443 (9%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
               Q R  F     +   SL D    G W  +D         +++ VKASGLRGRGGAG
Sbjct: 85  FFAGQQRFTFARCGIIDPLSLQDYADHGGWRGLDAARAMAPQAVVDAVKASGLRGRGGAG 144

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +    SD   ++V NADE + GT  DR +M  +P  LIEG  IA  A+GA 
Sbjct: 145 FPTGIKWQTVLDAVSD-AKFIVCNADEGDSGTFADRMLMEGDPFCLIEGMAIAGHAVGAG 203

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+     +++ A+                    + V  GAGAY+CGEETALL
Sbjct: 204 HGYIYIRSEYPFAIAAMREAIALSAERI---------APFTLEVRVGAGAYVCGEETALL 254

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           +S+EGK+GQ R KPP PA  GL+G PT +NNV S+A VP IL  GA  Y+  G   +RGT
Sbjct: 255 DSIEGKRGQVRAKPPLPALSGLFGQPTVINNVLSLAAVPFILAEGAEAYAAVGFGRSRGT 314

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V +    E    IT  EL+    GG   G   + AV  GG      P   M 
Sbjct: 315 MPVQLAGNVKHGGLYEIGFGITLGELVNGIGGGTASGRP-VRAVQVGGPLGAYFPPS-MF 372

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+   + G  +G A + + D   D+         F   ESCG+CTPCR G+   +
Sbjct: 373 DLPFDYEAFAQAGGLIGHAGITLFDDMVDMAHMARFAMEFCAVESCGKCTPCRIGSTRGV 432

Query: 360 RVMERLV----------KGIAQKREI--------------------DLLYEVSKNIEGRT 389
            VM+R++           G   +  +                     LL ++   ++  +
Sbjct: 433 EVMDRIIAARDSAPAVPAGRQWEGYLQKALNSRTPDRIDTGLEAQTALLRDLCDTMKHGS 492

Query: 390 ICALGDAAAWPIQGLIKNFRPLI 412
           +CALG    +P+   + +F    
Sbjct: 493 LCALGGFTPYPVLSALDHFPQDF 515


>gi|283850902|ref|ZP_06368188.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
 gi|283573825|gb|EFC21799.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
          Length = 454

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 143/420 (34%), Positives = 226/420 (53%), Gaps = 8/420 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N +  +  +  +  + G ++ +   I ++    +   V  + LRGRGGAGF  G KW
Sbjct: 9   LFKNRHYGRPTTFDEYRAGGGYEALFATIGKRTPAEVTQIVLDADLRGRGGAGFPAGRKW 68

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             +P      P Y+VVN DE EPGT KDR ++  +PH +IEG ++ ++A+ A     ++R
Sbjct: 69  QGIP-AGYVGPRYVVVNTDEMEPGTFKDRVLVNVDPHLVIEGIILCAYAVSATLGICFIR 127

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
             +  +   L+        +GLLG N     +  DI +H  AG YICGE +A ++++ G 
Sbjct: 128 PSYEADARLLERETQVARNNGLLGKNILGSDFSFDIHIHRSAGRYICGEASAQIKAISGL 187

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG-RENNRGTKLFSI 244
           +  PR   P  +  GL+ CPT VNN+E++A +P I+  G +W+ G    E   GTKLFS+
Sbjct: 188 RPNPRKGGPRTSVKGLWDCPTIVNNLETLANLPGIVANGPAWFKGLAHSETGSGTKLFSV 247

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  +     E+I  H GG+      + AVIPGG+S P +P   +    MD
Sbjct: 248 SGRVVRPDCYELPIGTPLREIIFDHAGGMP-PGRVIKAVIPGGASSPFMPEKYL-DLQMD 305

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           ++ +++ G  LGTA++IV D++T ++ A   L  F+  ESCG CTPCREG  ++  ++  
Sbjct: 306 FEPMRKAGQRLGTASIIVFDQNTCLVGATLNLMEFFARESCGWCTPCREGLPYVRDLLRL 365

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
           +  G  ++  ID++ ++ K +     CA    AA P+  L  +F   + E + Q  RC F
Sbjct: 366 IEGGEGREEHIDMIKDMGKAML-SAYCAFAPGAAEPLLSLFTHFEAEVREHLRQ-KRCPF 423


>gi|90425542|ref|YP_533912.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
 gi|90107556|gb|ABD89593.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB18]
          Length = 428

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 165/419 (39%), Positives = 236/419 (56%), Gaps = 12/419 (2%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
           G +    ++    G +D +   L++   D ++  V+ SGLRGRGGAGF TG KW  M K 
Sbjct: 13  GREPHRFAEWQRLGGYDALRGALQRHSPDALVTIVEDSGLRGRGGAGFLTGTKWRLMRKA 72

Query: 73  C---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
                D P YL VN DE EPG+ KDR +M   PH LIEG ++A++AIGA    I VR  +
Sbjct: 73  AEAAGDGPRYLCVNGDEMEPGSFKDRLLMEALPHQLIEGAMLAAYAIGATEVIILVRDAY 132

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
                +L  A+ E  ++GLLG N    G+ + + +H  AG YI GEETAL+ ++EG++  
Sbjct: 133 RAAAVALTRAITEAESAGLLGRNILGSGFGLKMRLHTSAGRYIVGEETALIAAIEGERPV 192

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR +PP+PA  GL+G PTTVNNVE+++ VP I++ GA W+ G  R    GTKL+ ISG V
Sbjct: 193 PRHRPPYPAQSGLWGRPTTVNNVETLSAVPHIVQNGAEWFQGLSRTAEGGTKLYGISGRV 252

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P  +E  M     ELIE   G        LLA  PGG +   L   ++    MD+  +
Sbjct: 253 ARPQLIEAPMGTPAGELIEMAGG--IRDGRKLLAFQPGGGATAFLQEAEL-DVPMDFAHV 309

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
           K+ GS LGT AVIV+D  +  + AI R + FY  ESCG CTPCR+G  W+ ++++ L  G
Sbjct: 310 KKAGSSLGTGAVIVLDDQSCPVAAIGRHARFYARESCGLCTPCRDGLPWVAKLLDALEAG 369

Query: 369 IAQKREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +  +IDLL+   +     GR+ C L   A  P++  ++ F  +    ++ +  C  +
Sbjct: 370 HGKPEDIDLLHMHVELAGPSGRSFCDLMAGAMTPVKSGLERFGDIFAAHLNGH--CPVR 426


>gi|116050628|ref|YP_790553.1| NADH dehydrogenase I subunit F [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585849|gb|ABJ11864.1| NADH dehydrogenase I chain F [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 449

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/412 (38%), Positives = 224/412 (54%), Gaps = 12/412 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  +    K L    +D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  QPVWLEEYQSKDGYAAARKALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++    
Sbjct: 90  LNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAAR 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L  A+DE  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 150 NLNRAIDEAKAAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 209

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYP 251
           PFPA VG++G PT VNNVE++  VP I+  G  WY    R  +   GTKL   SG V  P
Sbjct: 210 PFPAAVGVWGKPTCVNNVETLCNVPAIVGNGVDWYKTLARPGSEDMGTKLMGFSGKVKNP 269

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    ++  EL E + GG+R G+  L A  PGG+    L    +  A M   G+ ++
Sbjct: 270 GLWELPFGVSARELFEDYAGGMRDGF-QLKAWQPGGAGTGFLLPEHL-DAQMFAGGIAKV 327

Query: 312 GSGLGTAAVIVMDRSTD---IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
           G+ +GT       R         A W+ S      +     PCR+G  W ++++  L +G
Sbjct: 328 GTRMGTGLAHGGGRQHQHGFPCCATWKSSSPASPAAGA--PPCRDGLPWSVKLLRALERG 385

Query: 369 IAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             Q  +++ L ++   +  G+T CA    A  P+   +K FR   E  I + 
Sbjct: 386 EGQPGDLETLKQLVNFLGPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQ 437


>gi|194754954|ref|XP_001959757.1| GF11875 [Drosophila ananassae]
 gi|190621055|gb|EDV36579.1| GF11875 [Drosophila ananassae]
          Length = 520

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 193/421 (45%), Positives = 255/421 (60%), Gaps = 4/421 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NLYG     L  +  RG W     ILE G DW+++++K S LRGRGGAGF 
Sbjct: 85  LKDSDRIFQNLYGRHDWRLKGACQRGDWHKTGDILELGPDWMMDQIKQSALRGRGGAGFY 144

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
              KW F+ +V S++ P  LVVN  E EPGTCKDR+I+RHEPH LIEG ++A   IG   
Sbjct: 145 CATKWEFLKQVKSEKVPKMLVVNCAEGEPGTCKDREILRHEPHKLIEGILLAGVTIGCGR 204

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A IY+R  F  E  +L  A+ E Y  GL+G  +       DI++  G   Y+CGEETA+L
Sbjct: 205 AIIYIRNRFYNEACNLHYALAEAYHHGLVGDGACGTDIKFDIMIQRG-DRYLCGEETAML 263

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L G+ G+PR +PPF    G +  P  V N ES++V+PT+LRRG  W++G GR  N GT
Sbjct: 264 NCLMGELGRPRRRPPFLTEKGYFNHPCLVVNAESLSVLPTLLRRGPCWWTGLGRSYNAGT 323

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KLF ISG VN PCTVEE MS+   E+IE H GG++GGW+NLLAV PGG S   L      
Sbjct: 324 KLFCISGEVNNPCTVEEEMSMPMREIIELHAGGVQGGWENLLAVFPGGLSTALLGPEAAG 383

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
           G +MD+D L+  GSGLG  ++IVM +  D +  + R   FY+  +C QCT CR+G  W+ 
Sbjct: 384 GVMMDFDCLEAAGSGLGCGSIIVMSKKCDPLAIMHRAIEFYEEHTCKQCTYCRDGAIWLP 443

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R   G A   EID    ++  I+  R ICALG + A   + +++ F   I +RI +
Sbjct: 444 ELFGRFATGQAHPHEIDWTSVIADKIKNSRPICALGVSQAITAESMVRMFSEQINQRIVK 503

Query: 419 Y 419
           +
Sbjct: 504 F 504


>gi|33519940|ref|NP_878772.1| NADH dehydrogenase I chain F [Candidatus Blochmannia floridanus]
 gi|33504286|emb|CAD83178.1| NADH dehydrogenase I chain F [Candidatus Blochmannia floridanus]
          Length = 445

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 159/404 (39%), Positives = 229/404 (56%), Gaps = 7/404 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
            +    S+  S+  +    K +    +  II  +  SGLRGRGG GF TG+KWS M +  
Sbjct: 23  RKPVWFSEYQSKNGYMAFRKAIVNLSQSNIIELINKSGLRGRGGGGFLTGLKWSMMTQNK 82

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           S    YLV NADE EPGT KDR +M   PH L+EG +IA +A+G   A+I++R E++   
Sbjct: 83  SGLVRYLVCNADEMEPGTYKDRFLMERLPHLLLEGILIAGYALGVSVAYIFLRYEYMTAA 142

Query: 134 ESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           E L+ A++E  ++GLLG N     +++++ +H GAG YICGEETALL SLEG +  PR K
Sbjct: 143 EYLRIAINEIRSAGLLGKNILNTEFNLELFIHTGAGRYICGEETALLSSLEGNRAIPRAK 202

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNY 250
           PPFPA  GL+G PT VNNVE++  +P I+  G SWY        N+ GTKL   SG V  
Sbjct: 203 PPFPAQSGLWGKPTCVNNVETLCNIPGIIEHGVSWYKNISVKYSNDSGTKLMGFSGKVKN 262

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E    IT  E++E +  G+  G+  L A  PGG+S   L    +    MD+D +K 
Sbjct: 263 PGIWELPFGITAREILEDYAYGMCNGF-YLKAWQPGGASTDFLIENHL-DTPMDFDNIKS 320

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           +GS  GT   + +D + +++  +  L  F+  ESCG CTPCR+G  W+++++  L K   
Sbjct: 321 VGSRFGTGIAVAVDNTVNMVGLVRNLEEFFSRESCGWCTPCRDGLPWVVKLLIALEKNSG 380

Query: 371 QKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIE 413
              ++ +L  +   +  G+T CA    A  P++  +K FR   E
Sbjct: 381 YPEDLIMLEHLCNLLGPGKTFCAHAPGAMEPLKSALKYFRDEFE 424


>gi|163785517|ref|ZP_02180100.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879215|gb|EDP73136.1| NADH dehydrogenase I chain F [Hydrogenivirga sp. 128-5-R1-1]
          Length = 403

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/385 (42%), Positives = 226/385 (58%), Gaps = 16/385 (4%)

Query: 19  SLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
            + +  + G +  + K L K   + II+ V+ S LRGRGGAGF TG KW F+  V + +P
Sbjct: 33  DIEEYETTGGYSALKKALNKFTPEEIIDLVEESTLRGRGGAGFPTGRKWRFV--VSNPKP 90

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL+ NADESEPGT KDR I+  +PH LIEG +I+++AIGA   FIY+RGE+      L+
Sbjct: 91  RYLICNADESEPGTFKDRIIIERDPHLLIEGMIISAYAIGAEKGFIYIRGEYPAGYMILE 150

Query: 138 AAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A++E Y  G LG N     +  D+ V+ GAGAYICGEETAL+ESLEGK+G PRLKPP+P
Sbjct: 151 NAINEAYERGYLGKNILGSDFSFDLYVYRGAGAYICGEETALIESLEGKRGHPRLKPPYP 210

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
             VGL+G PT VNNVE+++ +P I+     ++   G     G KLF +SG V  P   E 
Sbjct: 211 PQVGLFGRPTVVNNVETLSNIPIIITY-EQYFMNIGPAGYYGPKLFPVSGRVKRPGVYES 269

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
           +M IT  ELIE   G +        AV  G   V            MDY   +  G   G
Sbjct: 270 TMDITLYELIEMAGGAVGKP----KAVFAGALGVYHKNE---FDIPMDY-SPRGFG---G 318

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T   IV++ +  II ++  ++ F+ HESCG+CTPCR GT     ++++  +G A +++I 
Sbjct: 319 TGTTIVLNENDCIIDSLIVITNFFHHESCGKCTPCRVGTYEQFNIIKKFQEGTATEKDIQ 378

Query: 377 LLYEVSKNIEGRTICALGDAAAWPI 401
           LL  + KNI   +IC LG +A   +
Sbjct: 379 LLEHLGKNIPVGSICGLGYSAPNAV 403


>gi|114771712|ref|ZP_01449116.1| formate dehydrogenase, beta subunit [alpha proteobacterium
           HTCC2255]
 gi|114547784|gb|EAU50674.1| formate dehydrogenase, beta subunit [alpha proteobacterium
           HTCC2255]
          Length = 565

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/397 (38%), Positives = 223/397 (56%), Gaps = 19/397 (4%)

Query: 18  KSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           ++L D  + G +  +  +    +  D I +E+  SGLRG GGAGF +G KWSF+      
Sbjct: 186 ENLKDYSANGGYAELQNLRNGSRTPDQIQDEILESGLRGMGGAGFPSGKKWSFVRMNEG- 244

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YL VN DE EPGT KDR  +  EPH  +EG +IA++A+ A   FIY+R E+    E 
Sbjct: 245 -VRYLAVNGDEGEPGTFKDRYFLEREPHFFLEGMLIAAWAVNAEKCFIYMRDEYPAVLEI 303

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L   +     SG++    + GY   I +  GAGAYICGEE+A++ES+EGKKG PR +PPF
Sbjct: 304 LAKEISALETSGIV----ESGY---IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPF 356

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A+VG++  PT V+NVE++  +  I R G++ +   G    +G + +S+SG V  P    
Sbjct: 357 VASVGIFNKPTLVHNVETLHWIAKISREGSAVFGAHGANGRKGLRSYSVSGRVRNPGIKL 416

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  ELIE + GG+     +  A  PGG S   LPA  M    +D+D L+E G+ +
Sbjct: 417 APAGTTVRELIEDYSGGM-LEGHSFKAYQPGGPSSGLLPAS-MGDIPLDFDTLQEYGTFI 474

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+AAV+V+       +A   +  F++ ESCGQCTPCR G    +++M         K + 
Sbjct: 475 GSAAVVVLSNHDSAKEAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------SQDKWDQ 528

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +LL E+S  +   +IC LG AA  PI+ +IK+F   I
Sbjct: 529 NLLEELSVAMVDASICGLGQAAPNPIRMVIKHFNDEI 565


>gi|162148250|ref|YP_001602711.1| NADH-quinone oxidoreductase subunit F [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209542890|ref|YP_002275119.1| NADH dehydrogenase (quinone) [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786827|emb|CAP56410.1| putative NADH-quinone oxidoreductase chain F [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530567|gb|ACI50504.1| NADH dehydrogenase (quinone) [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 428

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/412 (41%), Positives = 234/412 (56%), Gaps = 8/412 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-S 74
               +     G W  + + L +   + +I EV  S LRGRGGAGF TG KWSF+P+    
Sbjct: 15  PPDCAAYGRAGGWQGLRRALRDLTPEAVIAEVTDSRLRGRGGAGFGTGQKWSFVPRTPAG 74

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+  YLV NADE EPGT KDR ++   P  LIEG ++A +AI A    I++RGE+    +
Sbjct: 75  DQRKYLVANADEMEPGTFKDRILLEGNPLQLIEGMIVAGYAIQAGEGVIFLRGEYHLALD 134

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  A+DE  A G LG +    G+D DI VH   G YICGEETALL +LEG +  PR KP
Sbjct: 135 RLTRAIDEARAVGWLGRDIAGSGFDFDIHVHASGGRYICGEETALLTALEGSRAVPRSKP 194

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PFP   GL+G P+ VNNVE++  VP IL  GA+W+       + GTKLF +SG V  P  
Sbjct: 195 PFPQVGGLWGAPSVVNNVETLCNVPHILANGAAWFRALAIGPDGGTKLFGVSGRVKRPGA 254

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E  M     E+IE+H GG+R G+  L A++PGG+S   L  G +    MDY  +++ GS
Sbjct: 255 WELPMGTPLREIIEEHAGGMRDGYG-LRALLPGGASTAFLDGGAI-DIAMDYATVEKAGS 312

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            LGT   I++D  T  +  +  L  F+  ESCG CTPCR+G  W+ R+++ + +G  +  
Sbjct: 313 RLGTGLAILLDDRTCPVGMLRNLEHFFAQESCGWCTPCRDGLPWVERLLDAIEEGRGEDG 372

Query: 374 EIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           ++DLL   ++ I   GRT CA    A  P+   +  FR   E  + +  RC 
Sbjct: 373 DLDLLAHHARMIGPMGRTFCAHAPGAIAPLSSGLNLFRAEFEAHL-RLGRCP 423


>gi|326386802|ref|ZP_08208422.1| NADH dehydrogenase (quinone) [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208721|gb|EGD59518.1| NADH dehydrogenase (quinone) [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 503

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 144/434 (33%), Positives = 217/434 (50%), Gaps = 34/434 (7%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F      +  SL+D  + G W  + ++       +I EV  SGLRGRGGAG
Sbjct: 80  FLRGQQRLTFARAGKTRPLSLADYEATGGWAALRRVRGMTGAEVIAEVMQSGLRGRGGAG 139

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW  +         Y+V NADE + GT  DR +M  +P+ LIEG  IA+ A+GA 
Sbjct: 140 FPAGIKWKTVHDAP-GTRKYVVCNADEGDSGTFADRMLMEGDPYQLIEGLAIAAHAVGAG 198

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY R E+      L+AA+D             +     + V  GAGAY+CGEET+LL
Sbjct: 199 HGYIYTRSEYPHAIAKLRAAIDLSRE---------IVAPFVLEVRAGAGAYVCGEETSLL 249

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL-RRGASWYSGFGRENNRG 238
            S+EGK+G  R KPP PA  GL+GCPT VNNV +IA +P I+   GA+ Y+  G + + G
Sbjct: 250 NSIEGKRGIVRAKPPLPALEGLFGCPTVVNNVLTIAAIPHIMAEGGAAEYAALGVDRSLG 309

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           TK   ++G++ +    E +  IT  +L+    GG   G   + AV  GG     +P  Q 
Sbjct: 310 TKPIQLAGNIRHGGLYETAFGITLRDLVHAIGGGTASGRP-VKAVQVGGPLGAYIPPEQ- 367

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                DY+    + + +G   V+V D + D+         F   ESCG+CTPCR G+   
Sbjct: 368 FDLPFDYEAYARVDALIGHGGVVVFDDTADMGALARFAMEFCAAESCGKCTPCRIGSTRG 427

Query: 359 MRVMERLV--------------------KGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           + V++RL                         ++ ++DLL ++ + ++  ++CALG  A 
Sbjct: 428 VEVIDRLRTREKVLDPVAALPQMHNAPKHARGREADVDLLKDLCETMKFGSLCALGGFAP 487

Query: 399 WPIQGLIKNFRPLI 412
           +P+   ++ +    
Sbjct: 488 YPVLSALRYWPEDF 501


>gi|58697052|ref|ZP_00372511.1| NADH dehydrogenase I chain F [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58536680|gb|EAL59972.1| NADH dehydrogenase I chain F [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 340

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 203/325 (62%), Positives = 244/325 (75%), Gaps = 3/325 (0%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML +QD+IFTNL G +   L  +  RG W    ++L+ G + II+EVK SGLRGRGGAGF
Sbjct: 18  MLKEQDKIFTNLNGKETPLLEGAKKRGGWQKTKELLDLGSEKIIDEVKKSGLRGRGGAGF 77

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           STG+KWSFMPK       YLVVNADESEPGTCKDRDI+R+EPH L+EG ++AS AI A  
Sbjct: 78  STGLKWSFMPKNLP--KAYLVVNADESEPGTCKDRDILRYEPHKLLEGILLASRAISASV 135

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAGAYICGEETA L
Sbjct: 136 AYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYICGEETAQL 195

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W++  G+ NN GT
Sbjct: 196 ESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEWFTSLGKPNNTGT 255

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K+F ISGHVN PC VEE + I   ELIEK+ GG+RGGWDNLLAVIPGGSS P +P     
Sbjct: 256 KVFCISGHVNNPCNVEEELGIPLRELIEKYAGGVRGGWDNLLAVIPGGSSAPLIPKSICD 315

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMD 324
              MD+D L+   SGLGTAAVIVMD
Sbjct: 316 TIEMDFDSLRTAQSGLGTAAVIVMD 340


>gi|255647864|gb|ACU24391.1| unknown [Glycine max]
          Length = 315

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 209/305 (68%), Positives = 250/305 (81%), Gaps = 1/305 (0%)

Query: 116 IGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGE 174
           + A  A+IY+RGE++ ER++L+ A  E YA+GLLG N+   G+D D+ +H+GAGAYICGE
Sbjct: 1   MRASAAYIYIRGEYVNERKNLEKARQEAYAAGLLGENACGSGFDFDVHIHYGAGAYICGE 60

Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234
           E ALLESLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV PTILRRG  W++ FGR+
Sbjct: 61  EAALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRK 120

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
           NN GTKLF +SGHVN PCTVEE MSI   ELIE+HCGGIRGGWDNLLAVIPGGSSVP +P
Sbjct: 121 NNAGTKLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGIRGGWDNLLAVIPGGSSVPLIP 180

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
                   MDYD LK +G+GLGTAAVIVMD+STD++ AI RLS FYKHESCGQCTPCREG
Sbjct: 181 KHVCDDIFMDYDALKAVGTGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREG 240

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           TGW+  +MER+  G A+  EID+L E++K IEG TICALGDAAAWP+QGLIK+FRP +E 
Sbjct: 241 TGWLWTIMERMKVGNAKLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIKHFRPELER 300

Query: 415 RIDQY 419
           RI ++
Sbjct: 301 RIREH 305


>gi|87198757|ref|YP_496014.1| NADH dehydrogenase (quinone) [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134438|gb|ABD25180.1| formate dehydrogenase beta subunit [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 512

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 149/434 (34%), Positives = 212/434 (48%), Gaps = 34/434 (7%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            +  Q R  F      +  SL D  + G W  + +  E G    I +V  SGLRGRGGAG
Sbjct: 81  FIARQQRFTFVRAGRTRPLSLDDYAASGGWQGLARAREIGPVSTIAQVTESGLRGRGGAG 140

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G+KW+ +    S    Y+V NADE +  T  DR +M  +P  LIEG  IA FA+GA 
Sbjct: 141 FPAGIKWTTVA-NASGGTKYIVCNADEGDSATFADRMVMEGDPFMLIEGMAIAGFAVGAG 199

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            +++Y+R E+    E ++ AV    A         L    ++ V  GAGAY+CGEET+LL
Sbjct: 200 KSYVYIRSEYPHAIEKMEKAVRLSAA---------LVAPFEVEVRVGAGAYVCGEETSLL 250

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G+ R KPP PA  GL+G PT VNNV ++A VP IL +GA  Y+  G   +RGT
Sbjct: 251 NSLEGKRGEVRAKPPLPALEGLFGKPTVVNNVLTLAAVPFILAQGAQEYANVGLGRSRGT 310

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               ++G+V +    E    IT  EL+ +  GG   G   + AV  GG      P     
Sbjct: 311 MPIQLAGNVRHGGLFEVGFGITLGELVNEIGGGTASGRP-VRAVQVGGPLGAYHPPSDFH 369

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G A + V D + D+         F   ESCG+CTPCR G+   +
Sbjct: 370 -LPFDYEAFAAADGLIGHAGITVFDDTADMSAQARFAMEFCAAESCGKCTPCRIGSTRGV 428

Query: 360 RVMERLVK--GIAQKR-------------------EIDLLYEVSKNIEGRTICALGDAAA 398
            +++R+    G    R                   EI LL ++ + ++  ++CALG    
Sbjct: 429 ELIDRIRARSGRRPDRVEALPQMHNARKAERSLADEITLLEDLCETMKFGSLCALGGFTP 488

Query: 399 WPIQGLIKNFRPLI 412
           +P+   ++NF    
Sbjct: 489 YPVLSALRNFPEDF 502


>gi|330860331|emb|CBX70644.1| NADH-quinone oxidoreductase subunit F [Yersinia enterocolitica
           W22703]
          Length = 367

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 147/346 (42%), Positives = 205/346 (59%), Gaps = 6/346 (1%)

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 1   MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 60

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++IVH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 61  HLRRAIAEATEAGLLGKNIMGSGFDFELIVHTGAGRYICGEETALINSLEGRRANPRSKP 120

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYP 251
           PFPA+ G++G PT VNNVE++  VP IL  G  WY G   G+ N+ GTKL   SG V  P
Sbjct: 121 PFPASSGVWGKPTCVNNVETLCNVPAILEHGVEWYQGITAGKSNDAGTKLMGFSGRVKNP 180

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E + GG+R G     A  PGG+    L A  +    MD++ + + 
Sbjct: 181 GLWELPFGITAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTADHL-DLPMDFENIAKA 238

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  L +G  Q
Sbjct: 239 GSRLGTALAMAVDHEIGMVPLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQ 298

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I
Sbjct: 299 PGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGI 344


>gi|319760612|ref|YP_004124550.1| NADH-quinone oxidoreductase subunit F [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039326|gb|ADV33876.1| NADH-quinone oxidoreductase subunit F [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 444

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/407 (38%), Positives = 225/407 (55%), Gaps = 8/407 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
              L +  S+  +  + K +    +  I+  +  S LRGRGG GF TG+KWS M K  S 
Sbjct: 24  PVWLHEYQSKNGYFALRKAITCLSKLDIVELINKSRLRGRGGGGFLTGLKWSMMIKHQSI 83

Query: 76  -RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            + +YL+ NADE EPGT KDR +M   PH L+EG +IA +A+    A+I++R E++   +
Sbjct: 84  LKVNYLICNADEMEPGTYKDRLLMERLPHLLLEGILIAGYALSVSVAYIFLRYEYMIAAK 143

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L  A+ E  ++GLLG N     + +DI +H GAG YICGEETAL+ +LEGK+  PR KP
Sbjct: 144 YLNFAISELRSAGLLGKNILNTEFSLDIFLHTGAGRYICGEETALINALEGKRAVPRSKP 203

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR--ENNRGTKLFSISGHVNYP 251
           PFPA  GL+G PT +NNVE++  +P I+  G SWY        N+ GTKL   SG V  P
Sbjct: 204 PFPAQSGLWGKPTCINNVETLCNIPGIIEYGVSWYKNLSNKYSNDSGTKLMGFSGRVKNP 263

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E    IT  E++E +  G+      L A  PGG+S   L    +    MD+  +  +
Sbjct: 264 GVWELPFGITAREILEDYARGM-CDGLYLKAWQPGGASTDFLIPNHL-DTPMDFHSISII 321

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS  GT   I +D + ++I  +  L  F+  ESCG CTPCREG  W+++++  L K    
Sbjct: 322 GSRFGTGMAIAIDNTVNMISLMRNLEEFFARESCGWCTPCREGLPWIVKLLISLEKNNGD 381

Query: 372 KREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             +I++L  +   +  G+T CA    A  P+Q  +K FR   E  I 
Sbjct: 382 PGDIEILEHLCNLLGPGKTFCAHAPGAIEPLQSALKYFRSEFEAGIH 428


>gi|220931145|ref|YP_002508053.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
 gi|219992455|gb|ACL69058.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
          Length = 408

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 137/385 (35%), Positives = 211/385 (54%), Gaps = 6/385 (1%)

Query: 31  NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90
            + + L+  +  II E+K SGLRGRGGAGF TG+KW    K  +    Y++ N DE EPG
Sbjct: 22  ALKRALDMDKKDIIEELKKSGLRGRGGAGFPTGLKWELALKEKAG-EKYIICNGDEGEPG 80

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           T KDR ++ + P  ++EG +I ++ IGAH  +IY+RGE+       +  + E    G+LG
Sbjct: 81  TFKDRYLLENSPLKVLEGILIGAYTIGAHQGYIYIRGEYALPINIFRQVIKEAKKRGILG 140

Query: 151 SNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
           +      Y  D+ +  GAGAY+CG+ET+L+ S+EGK+G  R+KPP+P   GL+  PT VN
Sbjct: 141 NRVMGSDYSFDLKLIKGAGAYVCGDETSLINSIEGKRGTSRIKPPYPTRQGLFNKPTVVN 200

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI-TFDELIEK 268
           NVE++A    I+ +GA  Y   G E +RGTKL  +SG +  P   E      T  ELI+ 
Sbjct: 201 NVETLAAAAEIILQGADKYGSMGTEQSRGTKLVCLSGDICNPGVYEVEFGTMTIKELIDT 260

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             GG++     L  VIPGG S   L   ++      Y+ +++ GS LG+ AV+V+     
Sbjct: 261 FGGGVKCS-SGLKFVIPGGISTSVLKDDEL-DIPYTYEDIEKKGSSLGSGAVVVVSEDHY 318

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM-ERLVKGIAQKREIDLLYEVSKNIEG 387
           +   +  +S F+  E+CG C PCREG   +  ++  ++  G   + E  L+ ++ + I  
Sbjct: 319 LPDLMLNVSRFFMDETCGTCFPCREGNRRVHLLLKNKISDGRFDRDEKKLISDIGRAIHL 378

Query: 388 RTICALGDAAAWPIQGLIKNFRPLI 412
              C LG  +   +  ++  F   +
Sbjct: 379 AARCGLGQTSLNFVTSVLNKFEDEL 403


>gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydrogenase subunit beta Fdh1B
           [Herminiimonas arsenicoxydans]
 gi|133737538|emb|CAL60581.1| NADH dehydrogenase (Quinone) [Herminiimonas arsenicoxydans]
          Length = 567

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 147/393 (37%), Positives = 221/393 (56%), Gaps = 18/393 (4%)

Query: 22  DSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           +    G ++ + K +  E+  + ++  ++ SGLRG GGAGF  G KW  +       P  
Sbjct: 190 EYSKVGGYELLKKCISGERDVESVLKTMEDSGLRGLGGAGFPAGRKWRIVRGEKG--PRL 247

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           + VN DE EPGT KDR  +  +PH  +EG +IA++A+     +IY+R E+   R  L+A 
Sbjct: 248 MAVNIDEGEPGTFKDRVYLEKDPHRFLEGMLIAAWAVDIQTIYIYLRDEYHGCRVMLEAE 307

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           + +  A      N  +    +I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A V
Sbjct: 308 LAKLKA------NPPIANMPEIFLRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQV 361

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GL+G PT  +N E++  V  IL +G  W++  GR   +G + +S+SG V  P        
Sbjct: 362 GLFGRPTLEHNFETLYWVRDILEKGGEWFTSHGRNGRKGLRSYSVSGRVKNPGVKLAPAG 421

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
           IT  ELI++HCGG+          +PGG+S   LPA  M    +D+D L+  G  +G+AA
Sbjct: 422 ITIQELIDEHCGGM-LDGQTFYGYLPGGASGGILPAS-MNDIPLDFDTLQPYGCFIGSAA 479

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           VIVM      ++A   +  F+KHESCGQCTPCR GT     ++++       K ++ LL 
Sbjct: 480 VIVMSDKDTAVQAARNMMDFFKHESCGQCTPCRVGTAKAAELIKK------PKWDVGLLE 533

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           ++S  +   +IC LG AA  PI  ++K F   +
Sbjct: 534 DLSLVMRDSSICGLGQAAPNPIDCVVKYFPHEL 566


>gi|257082642|ref|ZP_05577003.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           E1Sol]
 gi|257085351|ref|ZP_05579712.1| NADH dehydrogenase [Enterococcus faecalis Fly1]
 gi|256990672|gb|EEU77974.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           E1Sol]
 gi|256993381|gb|EEU80683.1| NADH dehydrogenase [Enterococcus faecalis Fly1]
          Length = 432

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 228/414 (55%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG      +L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYSEQYGGGSATGRSLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|229550120|ref|ZP_04438845.1| NADH dehydrogenase (quinone) [Enterococcus faecalis ATCC 29200]
 gi|307277473|ref|ZP_07558565.1| HymB family protein [Enterococcus faecalis TX2134]
 gi|312952393|ref|ZP_07771268.1| HymB family protein [Enterococcus faecalis TX0102]
 gi|229304706|gb|EEN70702.1| NADH dehydrogenase (quinone) [Enterococcus faecalis ATCC 29200]
 gi|306505738|gb|EFM74916.1| HymB family protein [Enterococcus faecalis TX2134]
 gi|310629777|gb|EFQ13060.1| HymB family protein [Enterococcus faecalis TX0102]
 gi|315153356|gb|EFT97372.1| HymB family protein [Enterococcus faecalis TX0031]
 gi|315155867|gb|EFT99883.1| HymB family protein [Enterococcus faecalis TX0043]
 gi|315157966|gb|EFU01983.1| HymB family protein [Enterococcus faecalis TX0312]
          Length = 432

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 144/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK GQPR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGQPRVKPPHLADVGLYLQPTLVNNVESFASVPIILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|257086846|ref|ZP_05581207.1| NADH dehydrogenase [Enterococcus faecalis D6]
 gi|256994876|gb|EEU82178.1| NADH dehydrogenase [Enterococcus faecalis D6]
 gi|315027369|gb|EFT39301.1| HymB family protein [Enterococcus faecalis TX2137]
          Length = 432

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAG YICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGTYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRPLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|195149010|ref|XP_002015452.1| GL11014 [Drosophila persimilis]
 gi|194109299|gb|EDW31342.1| GL11014 [Drosophila persimilis]
          Length = 445

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 193/420 (45%), Positives = 254/420 (60%), Gaps = 22/420 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W +   +LEKG DWI+ +               
Sbjct: 43  LHDCDRVFQNLYGRHDWRLKGACKRGDWYHTAVLLEKGSDWIMEQ--------------- 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
               W+F+    S +   LV+N  E EPGTCKDR+I+RHEPH +IEGC++A FA+G + A
Sbjct: 88  ----WNFLRSAESKQDKVLVMNCAEGEPGTCKDREIIRHEPHKIIEGCLLAGFAMGCNRA 143

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IYVR  F  E  +LQ A+ E Y  GLLG ++   G   DI+V  G   Y+CGEETAL++
Sbjct: 144 IIYVRNRFYNEACNLQFALAEAYRYGLLGPSACDTGIKFDILVQRG-DRYLCGEETALVK 202

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK G+PR +PPF    G +  P  V N ESIAV+PTILRRGASW++  GR  N GTK
Sbjct: 203 CLMGKIGRPRRRPPFLTEQGYFSHPCVVINAESIAVLPTILRRGASWWADLGRSYNSGTK 262

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG VN PCTVEE MS+   +LIEKH GG+RGGWDNLLA+ PGG S P +       
Sbjct: 263 LFNISGQVNSPCTVEEEMSMPMRDLIEKHAGGVRGGWDNLLAIFPGGLSTPLINKQVAGE 322

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD++ L+  GS LG+ A+IV+++ +D ++ + R   FY+  +C QCT CR+G  W+  
Sbjct: 323 VLMDFECLEAAGSSLGSGALIVVNKQSDPLQVMLRSIQFYEKHTCKQCTYCRDGAIWLPE 382

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + +R VKG A   EID    + K I+    IC L          L+ NFRP IE+RI Q+
Sbjct: 383 LFDRFVKGEAHPHEIDWTLAIGKKIKDSNPICGLAQGQVNVAVSLVDNFRPYIEDRILQF 442


>gi|257415999|ref|ZP_05592993.1| NADH dehydrogenase [Enterococcus faecalis AR01/DG]
 gi|257157827|gb|EEU87787.1| NADH dehydrogenase [Enterococcus faecalis ARO1/DG]
          Length = 432

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG      +L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYSEQYGGGSATGRSLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
              + ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRTLELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|315147886|gb|EFT91902.1| HymB family protein [Enterococcus faecalis TX4244]
 gi|315150637|gb|EFT94653.1| HymB family protein [Enterococcus faecalis TX0012]
          Length = 432

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 228/414 (55%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG      +L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|256618969|ref|ZP_05475815.1| NADH dehydrogenase [Enterococcus faecalis ATCC 4200]
 gi|307288115|ref|ZP_07568125.1| HymB family protein [Enterococcus faecalis TX0109]
 gi|256598496|gb|EEU17672.1| NADH dehydrogenase [Enterococcus faecalis ATCC 4200]
 gi|306500851|gb|EFM70169.1| HymB family protein [Enterococcus faecalis TX0109]
 gi|315164269|gb|EFU08286.1| HymB family protein [Enterococcus faecalis TX1302]
 gi|327535030|gb|AEA93864.1| NADH-quinone oxidoreductase subunit F [Enterococcus faecalis OG1RF]
          Length = 432

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|168700382|ref|ZP_02732659.1| NuoF2 NADH I CHAIN F [Gemmata obscuriglobus UQM 2246]
          Length = 455

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 179/444 (40%), Positives = 259/444 (58%), Gaps = 26/444 (5%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIIN-EVKASGLRGRGGAGFSTG 63
           +  +   +       L    + G ++ + ++L+  +   +  +VK +GLRGRGGAGF TG
Sbjct: 4   EPVLLARINKPNSGKLEGYRADGGYETIARVLKDKQPLDVTTQVKDAGLRGRGGAGFPTG 63

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +KW+F+PK       YL VNADESEP T  +R +M  +PH ++EG ++A +AI +  AF 
Sbjct: 64  LKWTFLPKDHPGPV-YLCVNADESEPCTYNNRILMEKDPHQVLEGIMLACYAIKSPKAFY 122

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
           YVR E+     SL AAV+E YA+G LG       +D+DI++H GAGAYICGEET L+ESL
Sbjct: 123 YVRYEYGDSYRSLAAAVEELYAAGFLGKGIFGSSFDLDIVLHRGAGAYICGEETGLIESL 182

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-------- 234
           EGK+  PR+KPPFPA  G +  PT VNNVE++A V  I++RG  W+   G          
Sbjct: 183 EGKRAWPRIKPPFPAIEGAFRKPTIVNNVETLACVTQIMKRGKEWFQSLGVPPDPKNPRD 242

Query: 235 -NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL 293
             + G KL++++GHV     VE  M IT  +L+EKH GG+  G     AV PGG S+  +
Sbjct: 243 AGSYGPKLYTLAGHVEKSVCVEVPMGITIRDLVEKHGGGVWKGRKA-KAVNPGGLSMGFV 301

Query: 294 PAGQMR---------GAIMDYDGLKEMGS-GLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
                             +D++G   +   GLGTAAV V+D  T ++  +  +  F+ HE
Sbjct: 302 DVNAPLKGEDGKTEYDIPLDFNGPGRVQCLGLGTAAVTVIDDQTSMVDVLHNVCQFFSHE 361

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK---NIEGRTICALGDAAAWP 400
           SCGQCTPCREGTGWM+++ +RL +G+ +K ++D+L +V+     + G TIC L D A WP
Sbjct: 362 SCGQCTPCREGTGWMLKITDRLRRGLGRKEDLDILVDVADRIGIMPGTTICGLSDGAGWP 421

Query: 401 IQGLIKNFRPLIEERIDQYHRCNF 424
           ++  I+ FR   E  I    +  +
Sbjct: 422 VKTAIRKFRAEFEAAIKSGAKSKY 445


>gi|115523732|ref|YP_780643.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53]
 gi|115517679|gb|ABJ05663.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisA53]
          Length = 428

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/418 (39%), Positives = 235/418 (56%), Gaps = 12/418 (2%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
               S +D    G +D     L +   D ++  V+ASGLRGRGGAGF TG KW  M K  
Sbjct: 14  RTPHSFADWQRLGGYDAFRTALNRHSPDALVAIVEASGLRGRGGAGFLTGTKWRLMRKAA 73

Query: 74  ---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
               + P YL VN DE EPG+ KDR +M   PH L+EG +IA++A+GA    I VR  + 
Sbjct: 74  LVAGEGPRYLCVNGDEMEPGSFKDRLLMEALPHQLLEGAMIAAYAVGASEVIILVRDAYR 133

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
               +L  A+ E  ++GLLG N    G+ + + VH  AG YI GEETAL+ ++EG +  P
Sbjct: 134 TAAAALNRAIVEIESAGLLGRNILGSGFALKMRVHASAGRYIVGEETALIAAIEGDRPVP 193

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R +PP+PA  GL+G PTTVNNVE+++ +P I++ GA W+S     +  GTKL+ +SG V 
Sbjct: 194 RARPPYPAQSGLWGRPTTVNNVETLSNLPLIVQHGAEWFSALSHTSEGGTKLYGVSGRVA 253

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P  +E  M     ELIE  CGGIR G   L A  PGG +   L         MD++ +K
Sbjct: 254 RPQLIEAPMGTPARELIE-LCGGIRDGGK-LRAFQPGGGATAFL-EQAELDLPMDFEHMK 310

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
           + GS LGT AVIV+D ++  + AI R + FY  ESCG CTPCR+G  W+ +++++L  G 
Sbjct: 311 KAGSSLGTGAVIVLDEASCPVAAIARHARFYARESCGLCTPCRDGLPWVAKLLDQLEAGQ 370

Query: 370 AQKREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             +  IDLL+         GR+ C L   A  P++  ++ F  +    +  +  C  +
Sbjct: 371 GTRETIDLLHMHVDLAGPSGRSFCDLNTGALTPVRSGLQRFGDIFAAHLGGH--CPVR 426


>gi|226486988|emb|CAX75359.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Schistosoma
           japonicum]
          Length = 353

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 194/310 (62%), Positives = 243/310 (78%), Gaps = 1/310 (0%)

Query: 111 IASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGA 169
           IA  A+GA+ A+IY+RGEF  E  ++Q A+ E Y +G LG N+   G++ D+ +H GAGA
Sbjct: 28  IAGKAMGANVAYIYIRGEFYNEASNMQLAIKEAYEAGFLGKNACGTGFNFDVYMHRGAGA 87

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
           YICGEETAL+ES+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG  W++
Sbjct: 88  YICGEETALIESIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGDWFA 147

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
            FGRE NRGTKLF+ISGHVN PCTVEE MSI   +LIE+H GG+ GGWDNLLAVIPGGSS
Sbjct: 148 SFGRERNRGTKLFNISGHVNNPCTVEEEMSIPMRDLIERHAGGVIGGWDNLLAVIPGGSS 207

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
            P LP       +MD+D L +  SGLGTAA+IVM+RS D++  I RL  FY+HESCGQCT
Sbjct: 208 TPLLPKDICSTVLMDFDALVQANSGLGTAALIVMNRSADVVNCISRLIKFYEHESCGQCT 267

Query: 350 PCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
           PCREG  WM ++M R VKG A K EID+++E+SK +EGRTICAL D AAWP+QGLI++FR
Sbjct: 268 PCREGCRWMGQIMSRFVKGNANKSEIDMIWEISKQMEGRTICALADGAAWPVQGLIRHFR 327

Query: 410 PLIEERIDQY 419
           P +E R  ++
Sbjct: 328 PELEARFAKH 337


>gi|213409916|ref|XP_002175728.1| NADH-quinone oxidoreductase subunit F [Schizosaccharomyces
           japonicus yFS275]
 gi|212003775|gb|EEB09435.1| NADH-quinone oxidoreductase subunit F [Schizosaccharomyces
           japonicus yFS275]
          Length = 418

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 182/413 (44%), Positives = 247/413 (59%), Gaps = 5/413 (1%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           RIF N+     +S++ +  +G +  +  IL+K  + +IN +  S LRGRGG+GF TG KW
Sbjct: 3   RIFPNVNLNVARSIAFAKKQGRYSKLSDILKKKGEILINTISRSMLRGRGGSGFYTGRKW 62

Query: 67  SFMPKVC---SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
             +            YLVVNA E EPG+ KDR ++   PHT+IEG ++++ AIGA   +I
Sbjct: 63  ESVVATAELLKHPMRYLVVNASEGEPGSFKDRYLLASVPHTVIEGSIMSAKAIGASACYI 122

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESL 182
            VR E+ +E   LQ A++E Y  G LG N     + +DI +H G G YI GEETALLESL
Sbjct: 123 SVRAEYYKEALHLQEAINEAYEEGYLGKNILGTDFSLDIFIHRGEGNYISGEETALLESL 182

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           EGK  +PR++PPFP   G++GC T VNNVE+IA +P IL  G  W+   G  NN GTKLF
Sbjct: 183 EGKAAKPRVRPPFPTEHGVFGCATAVNNVETIANIPCILENGDEWFRSLGSPNNYGTKLF 242

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            ISG V  P   EE +SI   ELIE H GG+ GGWD+L+AV PGG S+      Q    +
Sbjct: 243 CISGDVRQPNVYEERLSIPLKELIETH-GGVIGGWDSLVAVFPGGPSMGICNKEQCEHML 301

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MDYD L+++G+GLGTA+VIV++    + +AI   S FYK E+C +C  CR GT  +  ++
Sbjct: 302 MDYDYLRQIGTGLGTASVIVLNDIDKVFEAILNFSKFYKKETCRKCLACRNGTKIINELL 361

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           E + +G A    I  L +VS  +   TIC    A +  +    KNF   I+ R
Sbjct: 362 ELVREGKATPSVITDLRQVSNYVTKDTICNFSAAPSLLLNSYFKNFPADIQRR 414


>gi|315145702|gb|EFT89718.1| HymB family protein [Enterococcus faecalis TX2141]
          Length = 432

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 228/414 (55%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQTFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG      +L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|255975952|ref|ZP_05426538.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T2]
 gi|307279196|ref|ZP_07560254.1| HymB family protein [Enterococcus faecalis TX0860]
 gi|255968824|gb|EET99446.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T2]
 gi|306504321|gb|EFM73533.1| HymB family protein [Enterococcus faecalis TX0860]
          Length = 432

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPIILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +   +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLTDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp.
           Marseille]
 gi|151280375|gb|ABR88785.1| formate dehydrogenase beta subunit [Janthinobacterium sp.
           Marseille]
          Length = 567

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/407 (36%), Positives = 226/407 (55%), Gaps = 20/407 (4%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           I      +   S     + G +  + K +  E+  + +I  ++ SGLRG GGAGF +G K
Sbjct: 178 IVQAEGSITDFS--AYQNEGGYALLKKCVSGERDVESVIKTMEDSGLRGLGGAGFPSGRK 235

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           W  +       P  + VN DE EPGT KDR  +  +PH  +EG +IA++A+     +IY+
Sbjct: 236 WRIVRGEKG--PRLMAVNIDEGEPGTFKDRVYLEKDPHRFLEGMLIAAWAVDIQTIYIYL 293

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           R E+   R  L+A +++  A      N  +    +I +  GAGAYICGEE+A++ES+EGK
Sbjct: 294 RDEYHGCRTMLEAELEKLKA------NPPIANMPEIFLRRGAGAYICGEESAMIESIEGK 347

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +G PRL+PP+ A VGL+G PT  +N E++  V  IL +G  W++  GR   +G + +S+S
Sbjct: 348 RGMPRLRPPYVAQVGLFGRPTLEHNFETLYWVRDILEKGGEWFTSHGRNGRKGLRSYSVS 407

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P        IT  ELI++HCGG+          +PGG+S   LPA  M    +D+
Sbjct: 408 GRVKNPGVKLAPAGITIQELIDEHCGGM-LEGQTFYGYLPGGASGGILPAS-MNAIPLDF 465

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L+  G  +G+AAVIV+      ++A   +  F+KHESCGQCTPCR GT     ++++ 
Sbjct: 466 DTLQPYGCFIGSAAVIVLSDKDTAVQAARNMMDFFKHESCGQCTPCRVGTAKAAELIKK- 524

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
                 K ++ LL ++S+ +   +IC LG AA  PI  ++K F   +
Sbjct: 525 -----PKWDVGLLEDLSQVMRDSSICGLGQAAPNPIDCVVKYFPHEL 566


>gi|227518655|ref|ZP_03948704.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX0104]
 gi|229545926|ref|ZP_04434651.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX1322]
 gi|256853026|ref|ZP_05558396.1| NADH dehydrogenase [Enterococcus faecalis T8]
 gi|256965224|ref|ZP_05569395.1| NADH dehydrogenase [Enterococcus faecalis HIP11704]
 gi|257419201|ref|ZP_05596195.1| NADH dehydrogenase [Enterococcus faecalis T11]
 gi|307273327|ref|ZP_07554572.1| HymB family protein [Enterococcus faecalis TX0855]
 gi|307291376|ref|ZP_07571260.1| HymB family protein [Enterococcus faecalis TX0411]
 gi|227073912|gb|EEI11875.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX0104]
 gi|229308994|gb|EEN74981.1| NADH dehydrogenase (quinone) [Enterococcus faecalis TX1322]
 gi|256711485|gb|EEU26523.1| NADH dehydrogenase [Enterococcus faecalis T8]
 gi|256955720|gb|EEU72352.1| NADH dehydrogenase [Enterococcus faecalis HIP11704]
 gi|257161029|gb|EEU90989.1| NADH dehydrogenase [Enterococcus faecalis T11]
 gi|306497607|gb|EFM67140.1| HymB family protein [Enterococcus faecalis TX0411]
 gi|306509854|gb|EFM78879.1| HymB family protein [Enterococcus faecalis TX0855]
 gi|315029989|gb|EFT41921.1| HymB family protein [Enterococcus faecalis TX4000]
 gi|315575555|gb|EFU87746.1| HymB family protein [Enterococcus faecalis TX0309B]
 gi|315580003|gb|EFU92194.1| HymB family protein [Enterococcus faecalis TX0309A]
          Length = 432

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|255659120|ref|ZP_05404529.1| protein HymB [Mitsuokella multacida DSM 20544]
 gi|260848565|gb|EEX68572.1| protein HymB [Mitsuokella multacida DSM 20544]
          Length = 416

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 132/406 (32%), Positives = 223/406 (54%), Gaps = 4/406 (0%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +  N       S+   M+ G ++ + K +    + I + + A  ++GRGGA +  G KWS
Sbjct: 7   LTKNFGKYDTSSIGSYMNVGGFEALRKAVTMDPEEITDLLTAVKIKGRGGAEYPLGRKWS 66

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
              +        ++ NADE E  T KDR+++ H+P  LIE  +IA++ +GA   FIY+R 
Sbjct: 67  -QARAVRGERKVVICNADEGETTTFKDRELICHDPFNLIEAMIIAAYVVGASDGFIYMRA 125

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+   R  L  A+ +    G LG+N    G+D DI ++ GAGAY+CGE TAL+ S+EGK 
Sbjct: 126 EYACFRPLLLNAIRQAKNYGFLGTNILGRGFDFDIHLYSGAGAYVCGEGTALIRSIEGKA 185

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR+KPPF    G++  PT +NNVE++++VP +L      Y+  G   + GTKL S++G
Sbjct: 186 GRPRMKPPFIKVSGVFARPTCLNNVETLSLVPHLLLDEEGVYASCGSGESIGTKLVSVAG 245

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
           +VN+P   E     T  E++ +  GGI+     +  +  GG+S   +    +      Y+
Sbjct: 246 NVNHPGVFEIPFGTTVREILYELAGGIQHDRK-IRLIQFGGAS-GKIADDSILDTPYTYE 303

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L+  G  +G+  ++V+D  T ++  +     F+  ESCGQCTPCREG   +  +++++ 
Sbjct: 304 DLRAAGVMVGSGGMLVIDERTSVLDFLRMNQEFFWEESCGQCTPCREGNLHIKIILDKMA 363

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            G A + +I ++ ++++ +   ++C LG+ A   +   +K F  L 
Sbjct: 364 TGTATREDIAIMMKIARVMSMSSLCGLGETAQNSLLSAMKVFPDLF 409


>gi|315160211|gb|EFU04228.1| HymB family protein [Enterococcus faecalis TX0645]
          Length = 432

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 228/414 (55%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQLMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG      +L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|299134801|ref|ZP_07027993.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
 gi|298590611|gb|EFI50814.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Afipia
           sp. 1NLS2]
          Length = 745

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 221/413 (53%), Gaps = 26/413 (6%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAG 59
           L   D   T+++          +++G +  ++ +   +  ++ I+  ++++ LRG GGAG
Sbjct: 350 LKQHD---THVHVPDYVEYESYIAQGGYTLLNSLRSGKTSKEDILKALESASLRGLGGAG 406

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG KW  +       P  + +N DE EPGT KDR  +  +PH  IEG +I +  + A 
Sbjct: 407 FPTGRKWRAVLGEPG--PRLMAINGDEGEPGTFKDRFYLETDPHRFIEGMLIGAHIVEAA 464

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+   RE L   +    A G             + +  GAGAYICGEE+ALL
Sbjct: 465 EVYIYLRDEYPASREILAREIARLPAGGP-----------TLHLRRGAGAYICGEESALL 513

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ES+EGK+G PR KPP+P  VGL+G PT +NNVE++  V  I+ +G  W+   GR +  G 
Sbjct: 514 ESIEGKRGMPRHKPPYPFQVGLFGLPTLINNVETLWWVRDIVEKGGEWWQAQGRNDRHGL 573

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           + +S+SG V  P        +T  ELIE+ CGG+        A +PGG+S   LPA  M 
Sbjct: 574 RSYSVSGRVKNPGVKLAPAGVTITELIEEFCGGMA-DGHKFRAYLPGGASGGILPAS-MN 631

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D+  L++ G  +G+AAV+V+    D+  A   L  F++ ESCGQCTPCR GT    
Sbjct: 632 DIPLDFGTLEKYGCFIGSAAVVVLSDKDDVKDAALNLMKFFEDESCGQCTPCRVGTQKAA 691

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +ME       +    DLL E+S+ +   +IC LG AA+ P+  +IK F    
Sbjct: 692 ALME------TRAWNRDLLNELSQTMRDASICGLGQAASNPLTSVIKYFPEEF 738


>gi|315174470|gb|EFU18487.1| HymB family protein [Enterococcus faecalis TX1346]
          Length = 432

 Score =  385 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R ++  Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKKFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK  +PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTERPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG      +L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|256958880|ref|ZP_05563051.1| NADH dehydrogenase [Enterococcus faecalis DS5]
 gi|257078911|ref|ZP_05573272.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis JH1]
 gi|294779582|ref|ZP_06744976.1| HymB family protein [Enterococcus faecalis PC1.1]
 gi|307271121|ref|ZP_07552404.1| HymB family protein [Enterococcus faecalis TX4248]
 gi|256949376|gb|EEU66008.1| NADH dehydrogenase [Enterococcus faecalis DS5]
 gi|256986941|gb|EEU74243.1| NADH ubiquinone oxidoreductase [Enterococcus faecalis JH1]
 gi|294453372|gb|EFG21780.1| HymB family protein [Enterococcus faecalis PC1.1]
 gi|306512619|gb|EFM81268.1| HymB family protein [Enterococcus faecalis TX4248]
 gi|315033792|gb|EFT45724.1| HymB family protein [Enterococcus faecalis TX0017]
 gi|315036877|gb|EFT48809.1| HymB family protein [Enterococcus faecalis TX0027]
 gi|323480624|gb|ADX80063.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Enterococcus
           faecalis 62]
 gi|329571419|gb|EGG53106.1| putative protein HymB [Enterococcus faecalis TX1467]
          Length = 432

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSGEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +   +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLTDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRKEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|315166637|gb|EFU10654.1| HymB family protein [Enterococcus faecalis TX1341]
          Length = 432

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNVRQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|149925366|ref|ZP_01913630.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105]
 gi|149825483|gb|EDM84691.1| NADH dehydrogenase (quinone) [Limnobacter sp. MED105]
          Length = 573

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 152/422 (36%), Positives = 228/422 (54%), Gaps = 25/422 (5%)

Query: 3   TDQDRIFTNLYGLQGKSLS-------DSMSRGHWDNVDKIL--EKGRDWIINEVKASGLR 53
            +  +I    +G   K+L           + G +  +   +  ++  + +I+ + +SGLR
Sbjct: 162 ANHHQIMEAAFGQHTKALPPHCASEPQYKATGGYQLLQACVSGQRTVESVIDTLSSSGLR 221

Query: 54  GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113
           G GGAGF  G KW+ + +  +  P  + VN DE EPGT KDR  +   PH  +EG +IA+
Sbjct: 222 GLGGAGFPAGKKWAIVREQTA--PRLMAVNIDEGEPGTFKDRSYLERNPHQFLEGMLIAA 279

Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICG 173
           +A+ A   +IY+R E+   R  LQ  +    A         +     I +  GAGAYICG
Sbjct: 280 WAVNASAIYIYLRDEYHACRSMLQNELALLKAKP------PMPNMPVIELRRGAGAYICG 333

Query: 174 EETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR 233
           EE+A+LES+EGK+G PRL+PP+ A VGL+  PT V+N E++  VP IL +GA W++  GR
Sbjct: 334 EESAMLESIEGKRGLPRLRPPYVAQVGLFNKPTLVHNFETLYWVPVILEKGAQWFASQGR 393

Query: 234 ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL 293
               G + FS+SG VN P        IT +ELI ++CGG+      L   +PGG+S   L
Sbjct: 394 HGRGGFRSFSVSGRVNKPGIHLAPAGITLNELISEYCGGM-QTGHTLYGYLPGGASGGIL 452

Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353
           PA  +    +D+D L+  G  +G+AA++V  ++   +     L  F+ HESCGQCTPCR 
Sbjct: 453 PA-VLADVPLDFDTLQPHGCFIGSAAIVVFSQADSAVNMARNLMRFFVHESCGQCTPCRT 511

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           GT   + ++         +  + LL E+S  +   +IC LG AA  PI  +I+ F   +E
Sbjct: 512 GTAKALALI------NQPQWNVPLLQELSAVMRDASICGLGQAAPNPIDCVIRYFPQELE 565

Query: 414 ER 415
            R
Sbjct: 566 SR 567


>gi|293383048|ref|ZP_06628966.1| protein HymB [Enterococcus faecalis R712]
 gi|293388209|ref|ZP_06632730.1| protein HymB [Enterococcus faecalis S613]
 gi|312907363|ref|ZP_07766354.1| HymB family protein [Enterococcus faecalis DAPTO 512]
 gi|312909979|ref|ZP_07768827.1| HymB family protein [Enterococcus faecalis DAPTO 516]
 gi|291079713|gb|EFE17077.1| protein HymB [Enterococcus faecalis R712]
 gi|291082393|gb|EFE19356.1| protein HymB [Enterococcus faecalis S613]
 gi|310626391|gb|EFQ09674.1| HymB family protein [Enterococcus faecalis DAPTO 512]
 gi|311289937|gb|EFQ68493.1| HymB family protein [Enterococcus faecalis DAPTO 516]
          Length = 432

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +S+      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVSEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      + + A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVSSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|312904133|ref|ZP_07763301.1| HymB family protein [Enterococcus faecalis TX0635]
 gi|310632609|gb|EFQ15892.1| HymB family protein [Enterococcus faecalis TX0635]
 gi|315578478|gb|EFU90669.1| HymB family protein [Enterococcus faecalis TX0630]
          Length = 432

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKSRGLYEVNLGTPLEEIIYGEQYGGGSATGRPLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+C PCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCIPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|198455798|ref|XP_001360108.2| GA20825 [Drosophila pseudoobscura pseudoobscura]
 gi|198135400|gb|EAL24682.2| GA20825 [Drosophila pseudoobscura pseudoobscura]
          Length = 445

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 192/420 (45%), Positives = 253/420 (60%), Gaps = 22/420 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W +   +LEKG DWI+ +               
Sbjct: 43  LHDCDRVFQNLYGRHDWRLKGACKRGDWYHTAVLLEKGSDWIMEQ--------------- 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
               W+F+    S +   LV+N  E EPGTCKDR+I+RHEPH +IEGC++A FA+G + A
Sbjct: 88  ----WNFLRCAESKQDKVLVMNCAEGEPGTCKDREIIRHEPHKIIEGCLLAGFAMGCNRA 143

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IYVR  F  E  +LQ A+ E Y  GLLG ++   G   DI+V  G   Y+CGEETAL++
Sbjct: 144 IIYVRNRFYNEACNLQFALAEAYRYGLLGPSACDTGIKFDILVQRG-DRYLCGEETALVK 202

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK G+PR +PPF    G +  P  V N ESIAV+PTILRRGASW++  GR  N GTK
Sbjct: 203 CLMGKIGRPRRRPPFLTEQGYFSHPCVVINAESIAVLPTILRRGASWWADLGRSYNSGTK 262

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF+ISG VN PCTVEE MS+   +LIEKH GG+RGGWDNLLA+ PGG S P +       
Sbjct: 263 LFNISGQVNSPCTVEEEMSMPMRDLIEKHAGGVRGGWDNLLAIFPGGLSTPLINKQVAGE 322

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD++ L+  GS  G+ A+IV+++ +D ++ + R   FY+  +C QCT CR+G  W+  
Sbjct: 323 VLMDFECLEAAGSSFGSGALIVVNKQSDPLQVMLRSIQFYEKHTCKQCTYCRDGAIWLPE 382

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           + +R VKG A   EID    + K I+    IC L          L+ NFRP IE+RI Q+
Sbjct: 383 LFDRFVKGEAHPHEIDWTLAIGKKIKDSNPICGLAQGQVNVAVSLVDNFRPYIEDRILQF 442


>gi|206602860|gb|EDZ39341.1| NADH dehydrogenase (Quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 453

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/416 (35%), Positives = 224/416 (53%), Gaps = 11/416 (2%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           G  LS  +  G ++ + ++L        I E+K +GLRGRGG+GF T +KW  +      
Sbjct: 29  GPGLSTYLKDGGYEGLRRVLGNLSPSEAIEELKEAGLRGRGGSGFPTAIKWEKVA-NHRI 87

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           R  Y+V N  E EPG+ KD  ++   PH ++EG +IASFA+ A  A ++V+  F R  ++
Sbjct: 88  REKYVVANGSEGEPGSHKDHFLIETNPHQILEGMIIASFAVQARKAILFVKDSFPRGIDA 147

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKP 193
           L+ A DE    G LG       + +D+ +  G  AYI GEETALLE+LEG+        P
Sbjct: 148 LKKARDEAREEGFLGDRILGSEFSIDLEIFVGPSAYIAGEETALLEALEGRLPKPRPKPP 207

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
            +P + GLY CPT VNNVE+ A V  I R GA W+   G   + GT +FS++G V  P  
Sbjct: 208 GYPTDRGLYNCPTVVNNVETYAHVSHIFRHGAHWFKRRGLPKSPGTMVFSVTGSVRRPIV 267

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           VE  +  +   L+E++ GG     + + +  PGG S   LPA  +    +DYD L+ +GS
Sbjct: 268 VELPLGTSLRTLVEEYAGGAP-DGERIESFYPGGPSFGVLPAKDL-DTPLDYDALRALGS 325

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           G+G+  VIV+      +    + + FY+  SCGQC PCR GT  +  ++E    G A K 
Sbjct: 326 GIGSGGVIVLSDKDCPVATARQFADFYETGSCGQCPPCRIGTENLHEILELFETGKASKE 385

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID-----QYHRCNF 424
            +  +  +S  I+GR  C L  A+A+ ++ L+++F    +  +D     + HR  F
Sbjct: 386 NVQRILRISDMIKGRGNCGLITASAYSVESLVRHFPEEFQSHLDDKGCRRQHRTPF 441


>gi|170728252|ref|YP_001762278.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169813599|gb|ACA88183.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Shewanella woodyi ATCC 51908]
          Length = 562

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 145/397 (36%), Positives = 216/397 (54%), Gaps = 20/397 (5%)

Query: 18  KSLSDSMSRGHWDNVD--KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +SL+D ++ G +   +  K        + ++V ++GLRG GGAGF +G KWSF+      
Sbjct: 184 QSLTDYLAGGGYQFYEQMKASTLDPIEVEDKVFSAGLRGMGGAGFPSGKKWSFVRAESG- 242

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P Y+ VN DE EPGT KDR  +  +PH  +EG +IA+ A+ A   ++Y+R E+      
Sbjct: 243 -PRYMAVNGDEGEPGTFKDRYYLETQPHLFMEGMLIAAQAVEAEHIYLYLRDEYPAALTI 301

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L+  + E  ++ ++     +GY   I +  GAGAYICGEE+A++ES+EGK+G PR +PPF
Sbjct: 302 LKREIAELESANIV----PIGY---IELRRGAGAYICGEESAMIESIEGKRGLPRHRPPF 354

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A  G++  PT V+N+E++  V  I R G    +   +    G + +S+SG V  P    
Sbjct: 355 VAQKGIFNQPTLVHNIETLYWVARICREGGEILTSVSKNGRTGLRSYSVSGRVINPGVYL 414

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  +LIE   G I      L A  PGG S   LPA  +    +D+D L+  GS +
Sbjct: 415 LPAGSTITDLIEAAGGMI--QGHRLKAYQPGGPSSGILPAS-LADVPLDFDTLQPHGSLI 471

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+AAV+V+     I  A   +  F+ HE+CGQCTPCR G    +++M         K + 
Sbjct: 472 GSAAVLVLSDKDSIRDAALNMMEFFDHENCGQCTPCRVGCEKAVKLM------REDKWDT 525

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            LL E+S  +E  +IC LG AA  PI+  IK+F   +
Sbjct: 526 SLLSELSSVMEDASICGLGQAAPNPIRLTIKHFPDEV 562


>gi|312900655|ref|ZP_07759952.1| HymB family protein [Enterococcus faecalis TX0470]
 gi|311292136|gb|EFQ70692.1| HymB family protein [Enterococcus faecalis TX0470]
          Length = 432

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 143/414 (34%), Positives = 228/414 (55%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNVRQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG      +L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLLRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|255972897|ref|ZP_05423483.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T1]
 gi|257422721|ref|ZP_05599711.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus
           faecalis X98]
 gi|255963915|gb|EET96391.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T1]
 gi|257164545|gb|EEU94505.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus
           faecalis X98]
          Length = 417

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/394 (35%), Positives = 219/394 (55%), Gaps = 4/394 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            +++      +D + + +    + I+NE+  + LRGRGGA +  G KW  +         
Sbjct: 6   DVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYHAK-GTTK 64

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q 
Sbjct: 65  YIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQE 124

Query: 139 AVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+D    +G LG N     G++ DI +  GAGAYICGE +ALL S+EGK GQPR+KPP  
Sbjct: 125 ALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGQPRVKPPHL 184

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+VGLY  PT VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E 
Sbjct: 185 ADVGLYLQPTLVNNVESFASVPIILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEV 244

Query: 257 SMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
           ++    +E+I  +  GG       L  +  GG S P      +R  +  Y+ L      +
Sbjct: 245 NLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSV 304

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++
Sbjct: 305 GSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDL 364

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             L ++  ++   + C LG + A P++  +  F 
Sbjct: 365 PRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 398


>gi|171058146|ref|YP_001790495.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170775591|gb|ACB33730.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Leptothrix cholodnii SP-6]
          Length = 627

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 156/391 (39%), Positives = 215/391 (54%), Gaps = 18/391 (4%)

Query: 31  NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS---DRPHYLVVNADES 87
            +   L +G   +++EVK S LRGRGGAG+ TG KW    +      D  HY+V NADE 
Sbjct: 215 ALAAALARGWQALLDEVKQSNLRGRGGAGYQTGRKWELCREAPGNTPDNTHYVVCNADEG 274

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EPGT KDR ++     +L EG  IA FAIGA   F+Y+RGE+    E LQA +     + 
Sbjct: 275 EPGTFKDRVLLSRYADSLFEGMTIAGFAIGARQGFVYLRGEYRYLLEPLQAVLQRRREAN 334

Query: 148 LLGS--NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           LLG+    + G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PP+P   G    P
Sbjct: 335 LLGAAIQGREGFDFDIDIHVGAGAYVCGEESALIESLEGKRGTPRIRPPYPVEHGYLDEP 394

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T VNNVE+   V  I   GA+W++G G   + GTK+ S+SG    P   E         +
Sbjct: 395 TIVNNVETYCAVTHIAVHGAAWWAGIGTPKSTGTKIHSVSGDCERPGIYEYPYGTRIGRI 454

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           +E           +  AV  GG S  CL A +    I   D            A +V DR
Sbjct: 455 LEDCGA------RDTQAVQVGGPSGVCLSAFEFGRRIAFED-------VPTAGAFMVFDR 501

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           S D+ +     + F+ HESCG CTPCR GT  +++ M++L  G   + ++D+L+E+ K +
Sbjct: 502 SRDMFEVARNFAQFFAHESCGFCTPCRVGTALVVKRMDKLAAGQGSRHDVDVLFELDKLM 561

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
              T C LG AA  P++  I  FRP  E+R+
Sbjct: 562 HTATHCGLGGAACNPLRDTIAKFRPAYEQRL 592


>gi|195119866|ref|XP_002004450.1| GI19938 [Drosophila mojavensis]
 gi|193909518|gb|EDW08385.1| GI19938 [Drosophila mojavensis]
          Length = 470

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 185/419 (44%), Positives = 247/419 (58%), Gaps = 22/419 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NLYG     L  +  RG W     +++ G DWI+ E               
Sbjct: 71  LVDCDRIFQNLYGRHDWRLQGARKRGDWHRTADLIKMGPDWIMGE--------------- 115

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
               W ++ KV + +   L+VN  E EPGTCKDR+I+RHEPH +IEGC++A  A+G    
Sbjct: 116 ----WEYLRKVQA-KGKVLIVNCAEGEPGTCKDREILRHEPHKIIEGCLLAGCAMGCERC 170

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            +YVR  F  E  +LQ A+ E Y  GL+G NS + G  +DIIV  G   Y+ GEETAL+ 
Sbjct: 171 IVYVRNRFYNEACNLQLALAEAYCCGLIGCNSCETGVKLDIIVQRG-DRYLTGEETALVN 229

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK  +PR +PPF    G +  P  V N E++AV+PT+LRRGA W++  G + N GTK
Sbjct: 230 CLMGKLARPRRRPPFLHEQGYFDHPCVVVNTETLAVLPTMLRRGAVWFTSLGSDKNFGTK 289

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LF ISGHV  PCTVEE MS+    +IE+H GG+ GGWDNLLA+ PGG S P + A     
Sbjct: 290 LFCISGHVVNPCTVEEEMSMPLRNIIERHAGGVCGGWDNLLALWPGGLSTPLMGAACAGQ 349

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +MD+D L   GS LGTAA+IV+ +  D +  +     F+  ++C QCTPCR+G  W+  
Sbjct: 350 VLMDFDHLSAAGSELGTAAIIVISKDCDPLLVMQHSIEFFMDQTCKQCTPCRDGAIWLPE 409

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           +    VKG A  + I+ +  + K +E  TIC L D+ A     LI++FRPLIE RI +Y
Sbjct: 410 LFSNFVKGEAVPQMIEFVDIIRKKMENSTICGLCDSQANLAGSLIQHFRPLIEARILEY 468


>gi|260886836|ref|ZP_05898099.1| protein HymB [Selenomonas sputigena ATCC 35185]
 gi|330839360|ref|YP_004413940.1| NADH dehydrogenase (quinone) [Selenomonas sputigena ATCC 35185]
 gi|260863435|gb|EEX77935.1| protein HymB [Selenomonas sputigena ATCC 35185]
 gi|329747124|gb|AEC00481.1| NADH dehydrogenase (quinone) [Selenomonas sputigena ATCC 35185]
          Length = 416

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 140/413 (33%), Positives = 222/413 (53%), Gaps = 7/413 (1%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            N +     S+   ++ G ++ + K +    + I + +  + ++GRGGA +  G KWS  
Sbjct: 9   KNFHRYDPMSIESYLAIGGFNALKKTVTMDGEDIASLLSEAQIKGRGGAAYPMGRKWS-Q 67

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            +        ++ NADE EP T KDR+++ ++P  LIE   I +++I A   +IY+R E+
Sbjct: 68  ARAVKGEHKVIICNADEGEPCTFKDRELITNDPFNLIEAMTIGAWSIRAQDGYIYLREEY 127

Query: 130 IRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
              R  L+ A++E    G LG N   K G+D  I +  GAGAY+CGE TAL+ S+EGK G
Sbjct: 128 AHLRSRLKNAIEEAERCGFLGKNILGKEGFDFHIHLRSGAGAYVCGEGTALIRSIEGKAG 187

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           +PR+KPPF    GL+  PT VNNVES+++VP +L      Y  +G   + GTKL S+ G+
Sbjct: 188 RPRMKPPFIKQSGLFALPTCVNNVESLSIVPHLLLDDKKEYISYGSGESLGTKLVSVGGN 247

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           VN P   E     T  E+I    GGI  G   +  +  GG+S   +    +      YD 
Sbjct: 248 VNCPAVFEIPFGTTVREIIYDLAGGI-QGGRRIRLIQFGGAS-GKIADESILDVPYTYDD 305

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           LK  G  +G+ A++V+D  T ++  +     F+ HESCGQCTPCREG   +  ++E+  +
Sbjct: 306 LKAAGVTVGSGAILVVDERTSVLDFLRMTQAFFSHESCGQCTPCREGVLHIKLILEKFAQ 365

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           G A +++++ +  +++ +    +C LG++A   +    K F      RI   H
Sbjct: 366 GTATEKDLENMKMIARIMPMSALCGLGESAENALSAAFKLFPETF--RIGGVH 416


>gi|29375956|ref|NP_815110.1| NAD-dependent formate dehydrogenase, beta subunit, putative
           [Enterococcus faecalis V583]
 gi|256762396|ref|ZP_05502976.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T3]
 gi|29343418|gb|AAO81180.1| NAD-dependent formate dehydrogenase, beta subunit, putative
           [Enterococcus faecalis V583]
 gi|256683647|gb|EEU23342.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           T3]
          Length = 417

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/394 (35%), Positives = 219/394 (55%), Gaps = 4/394 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            +++      +D + + +    + I+NE+  + LRGRGGA +  G KW  +         
Sbjct: 6   DVAEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGAAYPLGKKWRHLYHAK-GTTK 64

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q 
Sbjct: 65  YIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQE 124

Query: 139 AVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+D    +G LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  
Sbjct: 125 ALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHL 184

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+VGLY  PT VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E 
Sbjct: 185 ADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGLYEV 244

Query: 257 SMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
           ++    +E+I  +  GG       L  +  GG S P      +R  +  Y+ L      +
Sbjct: 245 NLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSV 304

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A   ++
Sbjct: 305 GSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDL 364

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             L ++  ++   + C LG + A P++  +  F 
Sbjct: 365 PRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 398


>gi|300860588|ref|ZP_07106675.1| putative NADH-quinone oxidoreductase subunit 1 [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849627|gb|EFK77377.1| putative NADH-quinone oxidoreductase subunit 1 [Enterococcus
           faecalis TUSoD Ef11]
          Length = 432

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/414 (34%), Positives = 227/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG      +L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTP R GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPFRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 413


>gi|94272888|ref|ZP_01292199.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
 gi|93449984|gb|EAT01388.1| NADH dehydrogenase (quinone) [delta proteobacterium MLMS-1]
          Length = 530

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/387 (34%), Positives = 223/387 (57%), Gaps = 7/387 (1%)

Query: 1   MLTDQDRIFTNLYG-LQGKSLSDSMSRGHWDNV-DKILEKGRDWIINEVKASGLRGRGGA 58
             + Q ++  + +  ++ + +   ++ G +  + D I  +    II+E+  SGLRGRGG 
Sbjct: 140 FFSRQRKVVLDRFEEMEPERIESYLAAGGYQALLDCIWHRQPAAIIDEISKSGLRGRGGG 199

Query: 59  GFSTGMKWSFMPKV--CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           G+  G+KW+ + K         Y++ NADE +PG   DR ++   PH ++EG  IA++A+
Sbjct: 200 GYPAGLKWATVAKAALPPGGRKYVICNADEGDPGAFMDRSVLESAPHRVLEGMAIAAYAV 259

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEE 175
           GA   ++YVR E+      L+ A+ +    GLLG       +D  + +  GAGA++CGEE
Sbjct: 260 GADFGYLYVRAEYPLAVARLKKAISQAEKLGLLGQRIGGSAFDFRVEIRLGAGAFVCGEE 319

Query: 176 TALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           TAL+ S+EGK+GQPR +PP+PA  G+ GCPT +NNVE++A +  I+ RG +W++  G E 
Sbjct: 320 TALVASIEGKRGQPRPRPPYPAEYGIKGCPTLINNVETLANITAIINRGGAWFATLGSEQ 379

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           ++GTK+F+++G V     +E  M IT  E++E+  GG   G  ++ AV  GG S  C+PA
Sbjct: 380 SKGTKVFALAGKVVNTGLIEVPMGITLHEIVEEMGGGTPAGG-SIKAVQTGGPSGGCIPA 438

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
                  +DY+ L+  GS +G+  +I+MD  + ++        F   ESCG+C PCR GT
Sbjct: 439 AH-FQLPVDYESLQAEGSIMGSGGLIIMDEGSGMVDVARFFMEFCVDESCGKCVPCRVGT 497

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVS 382
             ++ ++E++  G   + ++  L   +
Sbjct: 498 KQILLLLEKIGAGAGGQDDMARLQNFA 524


>gi|126666308|ref|ZP_01737287.1| NADH:ubiquinone oxidoreductase, chain F [Marinobacter sp. ELB17]
 gi|126629109|gb|EAZ99727.1| NADH:ubiquinone oxidoreductase, chain F [Marinobacter sp. ELB17]
          Length = 450

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/403 (37%), Positives = 224/403 (55%), Gaps = 8/403 (1%)

Query: 21  SDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
            +  ++  + +  + L +     II+ +K + +RGRGG GFS G+KW            Y
Sbjct: 44  EEYCAKEGYQSARQTLTQRTPADIIDTMKQANVRGRGGGGFSAGVKWGLTQVGDHLPRGY 103

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+ NADE EPGT KDR ++   PH LIE  +IA +A  +   +I++RGE++    S+  A
Sbjct: 104 LICNADEMEPGTFKDRLLLEQLPHLLIESMIIAGYANRSCYGYIFLRGEYVEAARSVALA 163

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           ++E   +GLLGS+    G+D DI +H GAG YICGEETAL+ SLEGK+  PR KPPFP  
Sbjct: 164 IEEARQAGLLGSDIAGSGFDFDIALHTGAGRYICGEETALINSLEGKRANPRAKPPFPGQ 223

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGF--GRENNRGTKLFSISGHVNYPCTVEE 256
            G +G PT VNNVE++  VP++++ GA WY G   G   + GTKL+ +SG V  P   E 
Sbjct: 224 SGAWGKPTVVNNVETLCNVPSVMQHGADWYQGLSGGLSEDGGTKLYGVSGLVERPGLWEL 283

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            +  +  E++E+  G        L A +PGG S   L    +    MD+  + + GS LG
Sbjct: 284 PIGTSGREILERAGGM--RQGHTLKAWLPGGGSTGFLLPEHL-DLPMDFGTIGQYGSRLG 340

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T  + V+     I+  +  L  F+  ESCG CTPCR+G  W +++++ L +G  +   I+
Sbjct: 341 TGLIAVVSERQSIVSLLRNLEQFFARESCGWCTPCRDGLPWTVKILQALERGEGKPEYIE 400

Query: 377 LLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +L + +  +   RT CA    A  P++  I++FR   E  I  
Sbjct: 401 ILEQHTLGLNPARTFCAHAPGAMMPLESAIRHFRADFEAGIAH 443


>gi|315170079|gb|EFU14096.1| HymB family protein [Enterococcus faecalis TX1342]
          Length = 432

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/414 (34%), Positives = 226/414 (54%), Gaps = 6/414 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPIILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRPLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             ++ ++ +  +  A   ++  L ++  ++   + C LG + A  ++  +  F 
Sbjct: 360 TRILELLSKFNRKEATASDLPRLEKMLTHVTRLSACGLGQSVATSMKSALTLFP 413


>gi|146277732|ref|YP_001167891.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025]
 gi|145555973|gb|ABP70586.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17025]
          Length = 416

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 154/412 (37%), Positives = 221/412 (53%), Gaps = 15/412 (3%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--- 71
            +  +L++  + G ++ V++        II+ V+A+ L GRGGAGF  G KW FMP+   
Sbjct: 14  RRPHTLAEWRAEGGYEAVERARTMTPSEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGT 73

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
              D P YL+VN DE EPG  KDR ++   PH +IEG +I + A  A  A + +R E+  
Sbjct: 74  SPGDGPSYLIVNGDEMEPGAFKDRFLLEAMPHQVIEGAIITARATHADEAIVLIRDEYRP 133

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              +++ A+ E   +GLLG       D+ I VH  AG YI GEETAL+ +LEG +  PR 
Sbjct: 134 GIAAVEHAIHEARTAGLLG-------DLTIRVHPSAGRYIVGEETALITALEGHRAVPRK 186

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+G PTTVNNVE+I++VP IL  G   +    R    GTKL+ +SG V  P
Sbjct: 187 RPPFPAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRP 246

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M  T  ELIE+  G    G   L A  PGG +       Q+    +D+  +   
Sbjct: 247 GLFEAPMGTTARELIERAGGVSGDG--QLRAFQPGGGASGFFGPDQL-DLPLDFGHVARA 303

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS  GT  +IV+D S   +  + R   FY  ESCG CTPCREG   + ++++R  +G  +
Sbjct: 304 GSMFGTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAEGRGR 363

Query: 372 KREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + +++LL   +      GR+ C L   A  P+   ++ F    E R+ +  R
Sbjct: 364 RADLELLQMTAAEAGPRGRSFCDLMGGAMAPLASGLRMFAAEFEARLAEGER 415


>gi|307824840|ref|ZP_07655063.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacter tundripaludum SV96]
 gi|307734198|gb|EFO05052.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacter tundripaludum SV96]
          Length = 609

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/390 (35%), Positives = 209/390 (53%), Gaps = 15/390 (3%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +    ++G    + E+  SGLRGRGGAGF T +KW F  +       Y+V NADE EP
Sbjct: 183 AALRSAFKRGIKETLKEIDYSGLRGRGGAGFKTAIKWQFCSEEQQ-TERYVVCNADEGEP 241

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR ++      + EG  + +  IGA   F+Y+RGE++   + LQ+ +++   + LL
Sbjct: 242 GTFKDRVLLNAYADQVFEGMTVCAAIIGAKQGFLYLRGEYLHLYDKLQSILEQRRQNSLL 301

Query: 150 GSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           G+N    G D DI +  GAGAYICGEE+AL+ESLEGK G PR +PP+P   G  G PT V
Sbjct: 302 GNNILDTGLDFDIEICLGAGAYICGEESALIESLEGKAGIPRNRPPYPVTQGYLGKPTVV 361

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           NNVE+      I   G+ W++  G E ++GTK+ SISG    P   E     T   ++  
Sbjct: 362 NNVETFLAAAGIAVNGSDWFANIGTEKSKGTKILSISGDCARPGIYEYPFGTTIQTILND 421

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                    D++L V  GG S   + + Q     + ++ L   GS       I+ + S +
Sbjct: 422 CGA------DDVLGVQVGGPSGTFI-SNQEFDRKLAFEDLATGGS------FIIFNSSRN 468

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
           I+  +   + F+ HESCG CTPCR GT  + + ++++V+G     ++  L E+ + ++  
Sbjct: 469 ILDMVHNFAHFFAHESCGFCTPCRVGTSLLQKQIDKIVEGHGSAGDVVALEELCQLVKNY 528

Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + C LG  AA PI   ++ +  L + R+ +
Sbjct: 529 SHCGLGQTAANPILTTLERYPDLYQSRLKE 558


>gi|145589293|ref|YP_001155890.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047699|gb|ABP34326.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 600

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/394 (37%), Positives = 219/394 (55%), Gaps = 19/394 (4%)

Query: 21  SDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
               ++G +    +I E  RD   II  +++SGLRG GGAGF  G KW  +    +  P 
Sbjct: 223 EAYRAKGGYALAKEIAEGKRDAESIIKAMESSGLRGLGGAGFPAGRKWRIVKDQVA--PK 280

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KDR  +  +PH  +EG +IA+  +G    +IY+R E+   RE LQ 
Sbjct: 281 LMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLIAASVVGIDACYIYLRDEYHGCRELLQL 340

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            +D+  A+              I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A 
Sbjct: 341 EIDKLKANPPFKLPL-------IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQ 393

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+G PT  +N E++  V  I++RG  W+S FGR + +G + FS+SG V  P       
Sbjct: 394 VGLFGRPTLEHNFETLYWVRDIVQRGPEWFSSFGRHDRKGLRSFSVSGRVKKPGVKLAPA 453

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  ELI+++CGG+          +PGG+S   LPA  M    +D+D L+  G  +G+A
Sbjct: 454 GITIQELIDEYCGGM-QEGHQFYGYLPGGASGGILPA-TMNDIPLDFDTLQPYGCFIGSA 511

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AV+V             +  F++HESCGQCTPCR GTG   ++M       A+  +   L
Sbjct: 512 AVMVFSNQDKARDMALNVMHFFEHESCGQCTPCRVGTGKAAKLM------QAKSWDQTTL 565

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +++  +   +IC LG AA  PI+ + K F   +
Sbjct: 566 EDLATVMVDASICGLGQAAPNPIRCIHKYFPNEV 599


>gi|257089783|ref|ZP_05584144.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus
           faecalis CH188]
 gi|256998595|gb|EEU85115.1| NAD-dependent formate dehydrogenase beta subunit [Enterococcus
           faecalis CH188]
          Length = 417

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 138/394 (35%), Positives = 218/394 (55%), Gaps = 4/394 (1%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            +++      +D + + +    + I+NE+  + LRGRGGA +  G KW  +         
Sbjct: 6   DVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGAAYPLGKKWRHLYHAK-GTTK 64

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A   +IY+RGE+ R +++ Q 
Sbjct: 65  YIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQE 124

Query: 139 AVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           A+D    +G LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KPP  
Sbjct: 125 ALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHL 184

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+VGLY  PT VNNVES A VP ILR G   +   G  +  GTKL  +SGH+      E 
Sbjct: 185 ADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKSRGLYEV 244

Query: 257 SMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
           ++    +E+I  +  GG       L  +  GG S P      +R  +  Y+ L      +
Sbjct: 245 NLGTPLEEIIYGEQYGGGSATGRPLKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSV 304

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+ A++VMD S +++  +  ++ F+ HESCG+C PCR GT  ++ ++ +  +  A   ++
Sbjct: 305 GSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCIPCRLGTTRILELLSKFNRNEATASDL 364

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             L ++  ++   + C LG + A P++  +  F 
Sbjct: 365 PRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 398


>gi|124514246|gb|EAY55760.1| NADH dehydrogenase (Quinone) [Leptospirillum rubarum]
          Length = 453

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/416 (35%), Positives = 223/416 (53%), Gaps = 11/416 (2%)

Query: 17  GKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           G  LS  +  G ++ + ++L        I E+K +GLRGRGG+GF T +KW  +      
Sbjct: 29  GPGLSTYLKDGGYEGLRRVLGNLSPSEAIEELKEAGLRGRGGSGFPTAIKWEKVAH-HRI 87

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           R  Y+V N  E EPG+ KD  ++   PH ++EG +IASFA+ A  A ++V+  F R  ++
Sbjct: 88  REKYVVANGSEGEPGSHKDHFLIETNPHQILEGMIIASFAVRARKAILFVKDSFPRGIDA 147

Query: 136 LQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKP 193
           L+ A DE    G LG         +D+ +  G  AYI GEETALLE+LEG+        P
Sbjct: 148 LKKARDEAREEGFLGDRILGSELSLDLEIFVGPSAYIAGEETALLEALEGRLPKPRPKPP 207

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
            +P + GLY CPT VNNVE+ A V  I R GA W+   G   + GT +FS++G V  P  
Sbjct: 208 GYPTDRGLYNCPTVVNNVETYAHVSHIFRHGAHWFKRRGLPKSPGTMVFSVTGSVKRPIV 267

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           VE  +  +   L+E++ GG     + + +  PGG S   LPA  +    +DYD L+ +GS
Sbjct: 268 VELPLGTSLRTLVEEYAGGAP-DGERIESFYPGGPSFGVLPAKDL-DTPLDYDALRALGS 325

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           G+G+  VIV+      +    + + FY+  SCGQC PCR GT  +  ++E    G A + 
Sbjct: 326 GIGSGGVIVLSDKDCPVATARQFAAFYETGSCGQCPPCRIGTENLHEILELFENGKASRE 385

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID-----QYHRCNF 424
            +  +  +S  I+GR  C L  A+A+ ++ L+++F    +  +D     + HR  F
Sbjct: 386 NVQRILRISDMIKGRGNCGLITASAYSVESLVRHFPEEFQSHLDDGGCRRQHRTPF 441


>gi|296274180|ref|YP_003656811.1| NADH dehydrogenase [Arcobacter nitrofigilis DSM 7299]
 gi|296098354|gb|ADG94304.1| NADH dehydrogenase (quinone) [Arcobacter nitrofigilis DSM 7299]
          Length = 423

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/412 (41%), Positives = 248/412 (60%), Gaps = 4/412 (0%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFM 69
            N        L  ++  G + +++K+     + +  EV  SGLRG+GG G + G KW  M
Sbjct: 13  KNFDIPDSHKLDVALKNGRYTSIEKLFTMAPEDVTEEVCKSGLRGKGGGGAACGPKWKLM 72

Query: 70  PKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
           P    +RP YL+VN DESEPGT KDR I +++PH LIEG + + +AIGAH A+IY+RGE+
Sbjct: 73  P-PVDERPRYLIVNGDESEPGTFKDRQIFQYDPHLLIEGIICSCYAIGAHDAYIYIRGEY 131

Query: 130 IRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
               + L  A+DE YA+G++G     K  + VDI VH G GAYICGE++AL+ESLEGK+G
Sbjct: 132 KWFIDRLNEAIDEAYAAGIIGDKIMGKHDFRVDITVHRGGGAYICGEKSALIESLEGKRG 191

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
            PRLKP        Y  P TVNNVE+IA VP I+  G   Y+ +G E   GT LF++SG 
Sbjct: 192 HPRLKPHGKECEWFYDMPATVNNVETIASVPNIVENGYESYTKYGTEKAPGTMLFAMSGP 251

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V  P   E        ++I +  GG++ G   L AVIPGG+S P L A  +  A +DY+ 
Sbjct: 252 VKNPGVYELQYGCKMADVINEIGGGMQDGLK-LKAVIPGGASCPILTAADVEKAYLDYES 310

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           + ++GS LGT  ++++     ++     L  FY HESCGQCTPCREGTGW+ +++  L++
Sbjct: 311 MWDIGSTLGTGGMMIIPEGVSMVDVAKNLIEFYHHESCGQCTPCREGTGWIDKILRELIE 370

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           G+A++ +I+ L +V   + G+TIC    A    I+ +++ ++    E I+  
Sbjct: 371 GVAKEDDIETLLDVCDTMNGKTICVFAPAVKDIIKSIVEKYKHEFLELIENK 422


>gi|73538478|ref|YP_298845.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
 gi|72121815|gb|AAZ64001.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
          Length = 580

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 217/396 (54%), Gaps = 19/396 (4%)

Query: 22  DSMSRGHWDNVDKILEKG---RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
              + G +  +  ++++G      +I  ++ SGLRG GGAGF TG KW  +    +  P 
Sbjct: 192 AYKANGGYGLLKALVQEGSLDPAAVICTMEDSGLRGLGGAGFPTGRKWRIVSGEPA--PR 249

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KDR  +  +PH  +EG +IA+        +IY+R E+   R  L  
Sbjct: 250 LMAVNIDEGEPGTFKDRVYLERDPHRFLEGMLIAAAVTQVAAIYIYLRDEYAGCRAILTQ 309

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+ E      L  +  +     I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A 
Sbjct: 310 ALQE------LHDDPPVPDLPRIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQ 363

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+G PT  +N E++  V  IL +GA W++  GR   +G + FS+SG V  P       
Sbjct: 364 VGLFGRPTLEHNFETLYWVRDILEKGAEWFASQGRHGRKGLRSFSVSGRVRQPGVHLAPA 423

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  ELI+++CGG+        A +PGG+S   LPA  M    +D+D L+  G  +G+A
Sbjct: 424 GITVRELIDEYCGGMI-DGHTFYAYLPGGASGGILPAS-MGNIPLDFDTLQPHGCFIGSA 481

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           A+IV+      + A   L  F+KHESCGQCTPCR GT   + ++         + ++  L
Sbjct: 482 AIIVLSDHDSAVAAARNLMHFFKHESCGQCTPCRVGTAKALDLI------RQPQWDLPAL 535

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            ++S  +   +IC LG AA  P+  +I+ F   ++ 
Sbjct: 536 EDLSAVMRDASICGLGQAAPNPVDCVIRYFPHELQA 571


>gi|121595765|ref|YP_987661.1| NADH dehydrogenase (quinone) [Acidovorax sp. JS42]
 gi|120607845|gb|ABM43585.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Acidovorax sp. JS42]
          Length = 640

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/397 (37%), Positives = 219/397 (55%), Gaps = 21/397 (5%)

Query: 19  SLSDSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
            L    + G +      L   E   + ++  ++ SGLRG GGAGF  G KW  +    + 
Sbjct: 231 DLVTYRAHGGYQ-TAAALVNGEMDAEAVLAAMEDSGLRGLGGAGFPAGRKWRIVRDQPA- 288

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P  + VN DE EPGT KDR  +  +PH  +EG +IA+  +G    +IY+R E+   R  
Sbjct: 289 -PRLMAVNIDEGEPGTFKDRTYLERDPHRFLEGVLIAAQVVGTEAVYIYLRDEYHGCRAL 347

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           LQ+A++E  A               I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+
Sbjct: 348 LQSALEELRAESPCPL-------PHIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPY 400

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A VGL+G PT  +N E++  V  I+ +G  W++ FGR   RG + FS+SG V  P    
Sbjct: 401 IAQVGLFGRPTLEHNFETLYWVRDIVEKGPQWFASFGRHGRRGLRSFSVSGRVKEPGVKL 460

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               IT  EL++++CGG+      L A +PGG+S   LPA ++    +D+D L+  G  +
Sbjct: 461 APAGITLRELVDEYCGGMA-DGHVLYAYLPGGASGGILPA-RLSDVPLDFDTLQPHGCFI 518

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+AAVIV+ +      A   +  F+ HESCGQCTPCR GT    ++M       A   + 
Sbjct: 519 GSAAVIVLSQHDRARDAALNMMRFFAHESCGQCTPCRVGTAKAAQLM------QAPLWDE 572

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           D L ++++ +   +IC LG AA  PI+ + K F   +
Sbjct: 573 DTLDDLAQVMADASICGLGQAAPNPIRCIHKYFAHEV 609


>gi|320104198|ref|YP_004179789.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Isosphaera pallida ATCC 43644]
 gi|319751480|gb|ADV63240.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Isosphaera pallida ATCC 43644]
          Length = 581

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/395 (37%), Positives = 226/395 (57%), Gaps = 19/395 (4%)

Query: 19  SLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           SL ++   G +  +   L+    R+ ++N V+ +GLRG GGAGF +G+KW  + K  +  
Sbjct: 204 SLDETRIHGGYLTLQHCLDGRLDREEVVNRVETAGLRGMGGAGFKSGLKWRLVRKQPA-- 261

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P  + +NADE EPGT KDR  +  +PH  +EG +IA++A+ A   +IY+R E+   R+ L
Sbjct: 262 PRLMAINADEGEPGTFKDRHHLELDPHRFLEGMLIAAWAVEAEACYIYLRDEYPHLRKVL 321

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
              ++    +GL            I++  GAGAYICGEE+A+LESLEGK+G PR KPP+P
Sbjct: 322 LREIERVARAGLSP-------HCRIVLRRGAGAYICGEESAMLESLEGKRGYPRHKPPYP 374

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
             VGL+G PT ++NVE++  +  IL RG  W++  GR    G + FS+SG V  P     
Sbjct: 375 VEVGLFGRPTLIHNVETVYWLRDILERGPDWFARHGRRGRTGLRSFSVSGRVAEPGVKLA 434

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              IT  ELI+++CGG+      L A +PGG+S   LPA ++    +D+  L   G  +G
Sbjct: 435 PAGITARELIDEYCGGMA-PGHTLKAYLPGGASGGLLPA-RLADEPLDFGTLDPYGCFIG 492

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+V      +   +  L  F++HESCGQCTPCR GT  ++++ +          +  
Sbjct: 493 SAAVVVFSEQDSLRAVVRNLLKFFEHESCGQCTPCRVGTEKLVQLTD------PPGWDRP 546

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411
           LL E+S+ +   +IC LG AA  P+  L++ F   
Sbjct: 547 LLLELSETMRQASICGLGQAAPNPLLSLLRFFPDE 581


>gi|126726910|ref|ZP_01742749.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2150]
 gi|126703868|gb|EBA02962.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2150]
          Length = 562

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 139/397 (35%), Positives = 207/397 (52%), Gaps = 20/397 (5%)

Query: 18  KSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           ++     + G +  +  +       D + ++V  SGLRG GGAGF +G KWSF+      
Sbjct: 184 ETFDAYHAAGGYAELAALRGGSMTPDQVQDKVLESGLRGLGGAGFPSGKKWSFVRMEQG- 242

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E+      
Sbjct: 243 -TRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKCFIYMRDEYPAVLHI 301

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L   +    A+G++ +         I +  GAGAYICGEE+A++ES+EGKKG PR +PPF
Sbjct: 302 LAQEIAALEAAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPPF 354

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A VG++  PT V+NVE++  V  I R G    +   +    G + +SISG V  P    
Sbjct: 355 VAQVGIFNRPTLVHNVETLYWVTKICREGPECLNTTVKNGRTGLRSYSISGRVKNPGVHL 414

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                T  +LIE   G +        A  PGG S   LPA  M    MD+D L+ +G+ +
Sbjct: 415 LPAGSTIMDLIEASGGML--DGHEFKAYQPGGPSAGLLPA-HMNDIPMDFDTLQAVGTFI 471

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+AA++++        A   +  F++ ESCGQCTPCR G    +++M           + 
Sbjct: 472 GSAAIVILSDQDRARDAALNMLKFFEDESCGQCTPCRVGCEKAVKLM------QEDTWDA 525

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           DLL ++   +   +IC LG AA  PI+  +++F+  +
Sbjct: 526 DLLTDLCDVMVDASICGLGQAAPNPIKLTLQHFKDEV 562


>gi|110681348|ref|YP_684355.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh
           114]
 gi|109457464|gb|ABG33669.1| formate dehydrogenase, beta subunit [Roseobacter denitrificans OCh
           114]
          Length = 560

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/398 (35%), Positives = 211/398 (53%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             ++ +   + G +  +  + E G  + + ++V ASGLRG GGAGF +G KW F+     
Sbjct: 181 DYETFAKYQAEGGYTALQDLRENGDWEAVQDKVLASGLRGLGGAGFPSGKKWGFVRANPG 240

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   +IY+R E+     
Sbjct: 241 --PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAERCYIYMRDEYPAVLH 298

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L   +     +G++           I +  GAGAYICGEE+A++ES+EGK+G PR +PP
Sbjct: 299 ILAEEIKALEDAGIVAPGF-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPP 351

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           + A VGL+G PT V+N+E++  V  I R G    S   +    G + +S+SG V  P   
Sbjct: 352 YVAQVGLFGQPTLVHNIETLHWVARICREGPETLSSTEKNGRVGLRSYSVSGRVAKPGVY 411

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  ++IE   G          A  PGG S   LPA  +    +D+D L+ +G+ 
Sbjct: 412 LLPAGSTITDIIEAAGGM--AEGHVFKAYQPGGPSSGLLPAS-INDVPLDFDTLQPLGTF 468

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A K +
Sbjct: 469 IGSAAVVVLSDQDKARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADKWD 522

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            DLL E+S  +   +IC LG AA  PI+  +K+F   I
Sbjct: 523 TDLLDELSTAMVDASICGLGQAAPNPIRLTMKHFPEEI 560


>gi|53803150|ref|YP_115124.1| NAD-reducing hydrogenase subunit alpha [Methylococcus capsulatus
           str. Bath]
 gi|53756911|gb|AAU91202.1| NAD-reducing hydrogenase, alpha subunit [Methylococcus capsulatus
           str. Bath]
          Length = 610

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 209/402 (51%), Gaps = 27/402 (6%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP------------KVCSDRP 77
           + +++ L   R+ +  E++ S LRGRGGAGF+T  KW F              +  +   
Sbjct: 189 EALERTLALDRETMFGEIETSQLRGRGGAGFNTAWKWRFCYEGPETAAVCPPGQPAAGIE 248

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+V NADE EPGT KDR +++     + EG  + ++ +GA   F+Y+RGE++   + L+
Sbjct: 249 RYVVCNADEGEPGTFKDRVLLQSCADQVFEGMTVCAYLVGAKQGFLYLRGEYLYLHDQLE 308

Query: 138 AAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           A +      GLLG +   + G+D DI +  GAGAYICGEE+AL+ESLEG +G PR +PP+
Sbjct: 309 AVLAARRRHGLLGKSILGREGFDFDIEIRLGAGAYICGEESALIESLEGNRGVPRNRPPY 368

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P   G  G PT VNNVE+      I   G  W++  G E ++GTKL SI G    P   E
Sbjct: 369 PVTHGYLGKPTVVNNVETFFAAAAIAVHGGEWFAEVGTEKSKGTKLLSICGDCARPGIYE 428

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               +T  +++E           ++L V  GG S   L   +     + Y+ L   GS  
Sbjct: 429 YPFGVTIRQVLEDCGAA------DVLGVQIGGPSGTFLSDKEC-DRKLAYEDLATGGS-- 479

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
                IV DR+ D+I      + F+ HESCG CTPCR GT  +  +++++ +G     ++
Sbjct: 480 ----FIVFDRTRDVIGIARNFTHFFAHESCGFCTPCRVGTALLKNLLDKIAEGHGATGDL 535

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             L  + + +   + C LG  AA PI   ++ +  + + R+ 
Sbjct: 536 AELSRLGRFVRSASHCGLGQTAANPILSTLERYPEIYQARLK 577


>gi|221639519|ref|YP_002525781.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131]
 gi|221160300|gb|ACM01280.1| NADH dehydrogenase [Rhodobacter sphaeroides KD131]
          Length = 416

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/412 (37%), Positives = 220/412 (53%), Gaps = 15/412 (3%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--- 71
            +  +L++  + G ++ V++        II+ V+A+ L GRGGAGF  G KW FMP+   
Sbjct: 14  RRPHTLAEWRAEGGYEAVERARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGT 73

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
              D P YL+VN DE EPG  KDR ++   PH +IEG +I + A  A  A + +R E+  
Sbjct: 74  SPGDGPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRP 133

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              +++ A+ E   +GLLG       D+ I VH  AG YI GEETAL+ +LEG +  PR 
Sbjct: 134 GIAAVERAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRK 186

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+G PTTVNNVE+I++VP IL  G   +    R    GTKL+ +SG V  P
Sbjct: 187 RPPFPAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRP 246

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M  T  ELIE+  G    G   L A  PGG +       Q+    +D+  + + 
Sbjct: 247 GLFEAPMGTTARELIERAGGVSGDG--RLRAFQPGGGASGFFGPDQL-DLPLDFGHVAKA 303

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS  GT  +IV+D +   +  + R   FY  ESCG CTPCREG   + ++++R   G  +
Sbjct: 304 GSMFGTGMLIVLDGTACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGR 363

Query: 372 KREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + +++LL   +      GR+ C L   A  P+   +  F    E R+ +  R
Sbjct: 364 RADLELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGER 415


>gi|157736572|ref|YP_001489255.1| NADH-quinone oxidoreductase, F subunit [Arcobacter butzleri RM4018]
 gi|157698426|gb|ABV66586.1| NADH-quinone oxidoreductase, F subunit [Arcobacter butzleri RM4018]
          Length = 416

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 168/420 (40%), Positives = 246/420 (58%), Gaps = 6/420 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           MLT    +  N        L  +++ G + ++DK+     + +  EV  SGLRG+GG G 
Sbjct: 1   MLTK--IVSKNFDIPNSHKLEVALANGRYSSIDKLFTMKPEEVTAEVTKSGLRGKGGGGA 58

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           + G KW  MP    +RP YL+VN DESEPGT KDR I +++PH LIEG +   +AI A+ 
Sbjct: 59  ACGPKWELMP-PVDERPRYLIVNGDESEPGTFKDRQIFQYDPHILIEGIICTCWAIQANH 117

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178
           A+IY+RGE+    + L  A+ E Y + ++G      YD   DI VH G GAYICGE++AL
Sbjct: 118 AYIYIRGEYKFFIDRLNEAIKEAYEAKIIGDKIMDKYDFKVDITVHRGGGAYICGEKSAL 177

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGK+G PRLKP        +  P TVNNVE+I+ VP I+  GA  Y+ +G E + G
Sbjct: 178 IESLEGKRGHPRLKPHGKECEWFFDNPATVNNVETISSVPNIVENGAEGYTKYGTEKSPG 237

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T LF+ISG V  P   E +      + +    GG+      L A+IPGGSS P L A ++
Sbjct: 238 TMLFAISGPVKNPGVYEMAYGNKMIDFLNVLGGGM-LEGKKLKAIIPGGSSCPILTASEV 296

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A++DY+ + E+GS LGT  +IV+D  T +++    +  FY HESCGQCTPCREGTGW+
Sbjct: 297 EKAVLDYESMWEIGSTLGTGGMIVIDEDTSMVEVAKNIIEFYHHESCGQCTPCREGTGWI 356

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +++++++ G A  +++  + +V   + G+T+C    A    I  ++K F    +  +  
Sbjct: 357 DKILKKVIAGEASDKDLKTIMDVCDTLNGKTVCVFAPAVKDIIASIVKKFPEEFKAYLKN 416


>gi|292492466|ref|YP_003527905.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nitrosococcus halophilus Nc4]
 gi|291581061|gb|ADE15518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nitrosococcus halophilus Nc4]
          Length = 564

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 144/396 (36%), Positives = 218/396 (55%), Gaps = 19/396 (4%)

Query: 19  SLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           S ++   +G +      +   +  + II+ ++ SGLRG GGAGF  G KW  + +  +  
Sbjct: 185 SYAEYCEQGGYQLWRDCVAGRRDPESIISMLEESGLRGLGGAGFPAGRKWRIVRQQPA-- 242

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P  + VN DE EPGT KDR  +  +PH  +EG +IA++A+G    F+Y+R E+   R+ L
Sbjct: 243 PRLMAVNIDEGEPGTFKDRYYLERDPHRFLEGTLIAAWAVGIDEIFLYLRDEYAGCRQLL 302

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +  +   +A               + +  GAGAYICGEE+A++ESLEGK+G PRL+PP+ 
Sbjct: 303 ERELALLHADPPCQL-------PQLHLRRGAGAYICGEESAMIESLEGKRGMPRLRPPYV 355

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT  +N+E++  V  I+ +G  W+S  GR   +G + FS+SG V  P     
Sbjct: 356 AQVGLFGRPTLEHNLETLYWVREIVEKGPDWFSSQGRHGRQGLRSFSVSGRVKKPGVHLA 415

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              IT  ELIE++CGG+      L    PGG+S   LPA  M    +D+D L+  G  +G
Sbjct: 416 PAGITLKELIEEYCGGM-LEGHELYGYFPGGASGGILPAS-MGDIPLDFDTLQPYGCFIG 473

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AA+IV  +     +       F++ ESCGQCTPCR GT    ++ME          +  
Sbjct: 474 SAAIIVFSQHDRAREVALNAMRFFEDESCGQCTPCRVGTAKASKLME------VSTWDQP 527

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL E+++ +   +IC LG AA  P++ ++K F   +
Sbjct: 528 LLEELAQAMADASICGLGQAAPNPLRCVMKYFPEEV 563


>gi|315635735|ref|ZP_07890998.1| NADH-quinone oxidoreductase subunit F [Arcobacter butzleri JV22]
 gi|315480032|gb|EFU70702.1| NADH-quinone oxidoreductase subunit F [Arcobacter butzleri JV22]
          Length = 416

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 167/420 (39%), Positives = 246/420 (58%), Gaps = 6/420 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           MLT    +  N        L  +++ G + ++DK+     + +  EV  SGLRG+GG G 
Sbjct: 1   MLTK--IVSKNFDIPNSHKLEVALANGRYSSIDKLFTMKPEEVTAEVTKSGLRGKGGGGA 58

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
           + G KW  MP    +RP YL+VN DESEPGT KDR I +++PH LIEG +   +AI A+ 
Sbjct: 59  ACGPKWELMP-PVDERPRYLIVNGDESEPGTFKDRQIFQYDPHILIEGIICTCWAIQANH 117

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV--DIIVHHGAGAYICGEETAL 178
           A+IY+RGE+    + L  A+ E Y + ++G      YD   DI VH G GAYICGE++AL
Sbjct: 118 AYIYIRGEYKFFIDRLNEAIKEAYEAKIIGDKIMDKYDFKVDITVHRGGGAYICGEKSAL 177

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +ESLEGK+G PRLKP        +  P TVNNVE+I+ VP I+  GA  Y+ +G E + G
Sbjct: 178 IESLEGKRGHPRLKPHGKECEWFFDNPATVNNVETISSVPNIVENGAEGYTKYGTEKSPG 237

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T LF+ISG V  P   E +      + +    GG+      L A+IPGGSS P L A ++
Sbjct: 238 TMLFAISGPVKNPGVYEMAYGNKMIDFLNVLGGGMI-DGKKLKAIIPGGSSCPILTASEV 296

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A++DY+ + ++GS LGT  +IV+D  T +++    +  FY HESCGQCTPCREGTGW+
Sbjct: 297 EKAVLDYESMWDIGSTLGTGGMIVIDEDTSMVEVAKNIIEFYHHESCGQCTPCREGTGWI 356

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +++++++ G A  +++  + +V   + G+T+C    A    I  ++K F    +  +  
Sbjct: 357 DKILKKVIAGEASDKDLKTIMDVCDTLNGKTVCVFAPAVKDIIASIVKKFPEEFKAYLKN 416


>gi|218671274|ref|ZP_03520944.1| NADH dehydrogenase I subunit F [Rhizobium etli GR56]
          Length = 290

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 225/280 (80%), Positives = 248/280 (88%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD    ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 2   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKHILEKGRDWIINEMKASGLRGRGGAGF 61

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ 
Sbjct: 62  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 121

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 122 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 181

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 182 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 241

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           LF +SGHVN PCTVEE M ITF EL+++H GGIRGGWD  
Sbjct: 242 LFMLSGHVNKPCTVEEEMGITFRELVDRHAGGIRGGWDIC 281


>gi|237808265|ref|YP_002892705.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
 gi|237500526|gb|ACQ93119.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
          Length = 570

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/400 (36%), Positives = 204/400 (51%), Gaps = 16/400 (4%)

Query: 23  SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
             S      + K      D +I E+ ASGL GRGGAGF TG KW        D   Y++ 
Sbjct: 180 YASHHANAGITKAAAMEPDEVIAEISASGLCGRGGAGFPTGTKWKMAADANGD-VKYMIC 238

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           NADE EPGT KDR  +      + EG  IA++AI A    +Y+R E+      L+  +  
Sbjct: 239 NADEGEPGTFKDRITLSWFADLVFEGMTIAAYAIRASQGIVYLRAEYAYLLPHLEQVLKA 298

Query: 143 CYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
              +GLLG +   K G++ DI +  GAG+Y+CGEETAL+ESLEG +G+PR +PP+P   G
Sbjct: 299 RREAGLLGCDISGKEGFNFDIRIQMGAGSYVCGEETALIESLEGNRGEPRNRPPYPTEAG 358

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
             G PT VNNVE++A V  IL RGA W+SG G E ++G KLFS+SG    P   E     
Sbjct: 359 FLGQPTVVNNVETLATVSVILARGAQWFSGIGTEKSKGFKLFSVSGECARPGLYELPWGS 418

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
           T   L+    G          AV  GG S   LPA +  G  + Y+ L    S      V
Sbjct: 419 TVSGLLALAGGEGA------KAVQIGGYSGRFLPAAE-FGRKLAYEDLGAGSS------V 465

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
           I+     D+++       F+  ESCGQCTPCR+G   ++  +  L  G    +++D L  
Sbjct: 466 IIYGPDRDLLEVAENYLEFFVEESCGQCTPCRDGNVVLLNGIRSLRNGKCSGQQLDELLS 525

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +++ I   + C LG ++   +  + + FR  I   +   H
Sbjct: 526 LAETICVASKCGLGQSSPKVLLSINRYFRNEINAHLTAEH 565


>gi|126462508|ref|YP_001043622.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029]
 gi|126104172|gb|ABN76850.1| NADH dehydrogenase (quinone) [Rhodobacter sphaeroides ATCC 17029]
          Length = 416

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/412 (36%), Positives = 220/412 (53%), Gaps = 15/412 (3%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--- 71
            +  +L++  + G ++ V++        II+ V+A+ L GRGGAGF  G KW FMP+   
Sbjct: 14  RRPHTLAEWRAEGGYEAVERARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGT 73

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
              + P YL+VN DE EPG  KDR ++   PH +IEG +I + A  A  A + +R E+  
Sbjct: 74  SPGEGPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRP 133

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              +++ A+ E   +GLLG       D+ I VH  AG YI GEETAL+ +LEG +  PR 
Sbjct: 134 GIAAVERAIHEARDAGLLG-------DLTIRVHPSAGRYIVGEETALITALEGHRAVPRK 186

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+G PTTVNNVE+I++VP IL  G   +    R    GTKL+ +SG V  P
Sbjct: 187 RPPFPAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRP 246

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M  T  ELIE+  G    G   L A  PGG +       ++    +D+  + + 
Sbjct: 247 GLFEAPMGTTARELIERAGGVSGDG--QLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKA 303

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS  GT  +IV+D S   +  + R   FY  ESCG CTPCREG   + ++++R   G  +
Sbjct: 304 GSMFGTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGR 363

Query: 372 KREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + +++LL   +      GR+ C L   A  P+   +  F    E R+ +  R
Sbjct: 364 RADLELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGER 415


>gi|92113124|ref|YP_573052.1| NADH dehydrogenase (quinone) [Chromohalobacter salexigens DSM 3043]
 gi|91796214|gb|ABE58353.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 595

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/409 (36%), Positives = 226/409 (55%), Gaps = 24/409 (5%)

Query: 13  YGLQGK-----SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65
                +      L+D  + G +  +          + ++  ++ + LRG GGAGF T  K
Sbjct: 197 GHYHPEAILWQRLADYRAEGGYALLADCHAGRVTVEALMQALETANLRGLGGAGFPTFKK 256

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           W+F+ +     P Y  +NADE EPGT KDR  +   PH  +EG +++++A+ A   +IY+
Sbjct: 257 WTFVRQEAG--PRYCAINADEGEPGTFKDRVYLERSPHRFLEGALVSAWAVEAEALYIYL 314

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           R E+      L+ A+ E    GL+  +        I++  GAGAYICGEE+A++ESLEGK
Sbjct: 315 RDEYPGLHRVLREAIAELEDEGLVVPDY-------IVLRRGAGAYICGEESAMIESLEGK 367

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PR +PPF A  GL+  PT VNNVE++  +P I +RGA  ++  GR    G + FS+S
Sbjct: 368 PGKPRHRPPFVAQRGLFDRPTLVNNVETVYWIPLIWQRGAEAFARQGRHGRVGLRSFSVS 427

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V +P        IT +ELIE++CGG+      L+A +PGG+S   LPA +     +D+
Sbjct: 428 GRVKHPGVHLAPAGITLEELIEEYCGGMA-EGHRLVAYLPGGASGGILPASK-ANVPLDF 485

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L+  G  +G+AAVIV+    D+      L  F+  ESCGQCTPCR GT  M+ ++E  
Sbjct: 486 DTLQAYGCFIGSAAVIVLSDQDDLRAVATNLLAFFADESCGQCTPCRVGTEKMLTLLE-- 543

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
                 + +   L  +S+ +   +IC LG AA  P+ GL+K+FR  +  
Sbjct: 544 ----GDEWDAATLTRLSQVMMDASICGLGQAAPNPVLGLLKDFRGELAA 588


>gi|217978887|ref|YP_002363034.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylocella silvestris BL2]
 gi|217504263|gb|ACK51672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylocella silvestris BL2]
          Length = 603

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/389 (36%), Positives = 211/389 (54%), Gaps = 16/389 (4%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D +   L++  + +I E+  S LRGRGGAGF TGMKW    K   +   Y++ NADE EP
Sbjct: 198 DGIKAALDQSPEQVIEEISNSKLRGRGGAGFPTGMKWRLTRKAVGE-NRYVICNADEGEP 256

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR ++   P  + +G  IA +A+GA    +Y+RGE+    + LQ  + +  A GLL
Sbjct: 257 GTFKDRLLLTEFPDLVFDGMTIAGYALGARRGVVYLRGEYAYLWDPLQEVLRDRRALGLL 316

Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           G++   + G+D DI +  GAGAY+CGEE+ALLES+EGK+G PR +PPFP   G    PT 
Sbjct: 317 GADICGRSGFDFDIRIQLGAGAYMCGEESALLESMEGKRGAPRDRPPFPTERGYLRQPTA 376

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           ++NVE+ A    I+ +GA+W++GFG + + GTKL S+SG    P   E    IT +EL++
Sbjct: 377 IDNVETFACAARIVEKGAAWFTGFGTKESTGTKLMSVSGDCQRPGVYEVPFGITVNELLD 436

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                     D     I G S     P     G  + Y+ L   GS +      +   + 
Sbjct: 437 LVGA-----PDAEYVQISGPSGQSVAPKD--FGRRIAYEDLSTGGSTM------IFGPNR 483

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           D++  + + + F+ HESCG C PCR G   + + ME++V G A   +I     ++  +  
Sbjct: 484 DVLDIVLQFADFFVHESCGWCAPCRVGAPLLKQGMEKIVAGRATLADIAATEALANTVMR 543

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
            + C LG  A  PI   + +F  L E R+
Sbjct: 544 MSRCGLGQTAPNPILTTMLSFPELYEARL 572


>gi|307331426|ref|ZP_07610544.1| NADH dehydrogenase (quinone) [Streptomyces violaceusniger Tu 4113]
 gi|306882925|gb|EFN13993.1| NADH dehydrogenase (quinone) [Streptomyces violaceusniger Tu 4113]
          Length = 366

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/368 (41%), Positives = 213/368 (57%), Gaps = 10/368 (2%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I EV  +GL GRGGA F TG KW+   +   D PHYLV NADESEPGT KDR +M  +P
Sbjct: 1   MIREVTEAGLVGRGGAAFPTGRKWAATAQQP-DHPHYLVCNADESEPGTFKDRVLMEGDP 59

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDI 161
           + LIE   IA +A GAH  ++Y+RGE+ R    L+ A+D   A G LG +    G+  +I
Sbjct: 60  YALIEAMTIAGYATGAHRGYLYLRGEYPRALRRLRTAIDRARARGFLGEDVMGQGFAFEI 119

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +  GAGAYICGEETA+  S+EG++G+PR KPPFP   GL+G PT VNNVE++  V  IL
Sbjct: 120 EIRRGAGAYICGEETAIFNSIEGRRGEPRSKPPFPVEKGLFGKPTAVNNVETLVNVLPIL 179

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA  Y+  G   + GTKLF +SG V  P   E     T  EL+E          + L 
Sbjct: 180 IEGAQAYARTGTGTSTGTKLFCVSGTVARPGVYELPFGATLGELLELAG-----PPETLR 234

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AV+ GG++   +   ++    + ++G +  G+ LG+  V+V+D S D+ + + R++ F++
Sbjct: 235 AVLLGGAAGGFVRPDEL-DVPLTFEGTRAAGTTLGSGVVLVLDDSVDLPRVLLRIAEFFR 293

Query: 342 HESCGQCTPCREGTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
            ESCGQC PCR GT      + R+    G A   +I LL EV + +   +IC LG  A  
Sbjct: 294 DESCGQCVPCRVGTVRQEEALHRIKDLTGAAAAGDIALLREVGQAMRDASICGLGQTAWN 353

Query: 400 PIQGLIKN 407
            ++  I  
Sbjct: 354 AVESAIDR 361


>gi|124265531|ref|YP_001019535.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
 gi|124258306|gb|ABM93300.1| NADH dehydrogenase (quinone) [Methylibium petroleiphilum PM1]
          Length = 573

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 225/398 (56%), Gaps = 18/398 (4%)

Query: 19  SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L      G +  + + L  E+  + +++ ++ASGLRG GGAGF  G KW  + +  +  
Sbjct: 192 TLPSYHDAGGYRTLRQCLSGERPLETVLSTMEASGLRGLGGAGFPAGRKWRIVREQAA-- 249

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P  + VN DE EPGT KDR  +  +PH  +EG +IA++A+G    +IY+R E+   R  L
Sbjct: 250 PRLMAVNIDEGEPGTFKDRHYLERDPHRFLEGLLIAAWAVGVDAVYIYLRDEYHGCRTLL 309

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +  +    A      +  +     I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ 
Sbjct: 310 ERELAALRA------DPPMRDMPAIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYV 363

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT  +N E++  V  IL +G  W++G GR   +G + FS+SG V  P     
Sbjct: 364 AQVGLFGRPTLEHNFETLYWVRDILEKGGDWFAGHGRHERKGLRSFSVSGRVKKPGVHLA 423

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              IT  EL++++CGG+      L A +PGG+S   LP  ++    +D+D L+  G  +G
Sbjct: 424 PAGITLRELVDEYCGGM-LDGHQLHAYLPGGASGGILP-ERLADVPLDFDTLQPHGCFIG 481

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+V+     +      L  F++HESCGQCTPCR GT  +  ++       + + ++ 
Sbjct: 482 SAAVVVLSDQDRVTDVARNLMRFFEHESCGQCTPCRSGTAKVNELIA------SDRWDLP 535

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           LL E+S+ +   +IC LG AA  P+  +IK F   +  
Sbjct: 536 LLAELSQVMRDASICGLGQAAPNPVDCVIKYFPEELTA 573


>gi|332558532|ref|ZP_08412854.1| NADH dehydrogenase [Rhodobacter sphaeroides WS8N]
 gi|332276244|gb|EGJ21559.1| NADH dehydrogenase [Rhodobacter sphaeroides WS8N]
          Length = 416

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/412 (37%), Positives = 220/412 (53%), Gaps = 15/412 (3%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--- 71
            +  +L++  + G ++ V++        II+ V+A+ L GRGGAGF  G KW FMP+   
Sbjct: 14  RRPHTLAEWRAEGGYEAVERARNMAPGEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGT 73

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
              D P YL+VN DE EPG  KDR ++   PH +IEG +I + A  A  A + +R E+  
Sbjct: 74  SPGDGPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRP 133

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              +++ A+ E   +GLLG       D+ I VH  AG YI GEETAL+ +LEG +  PR 
Sbjct: 134 GIAAVEHAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRK 186

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+G PTTVNNVE+I++VP IL  G   +    R    GTKL+ +SG V  P
Sbjct: 187 RPPFPAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRP 246

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M  T  ELIE+  G    G   L A  PGG +       ++    +D+  + + 
Sbjct: 247 GLFEAPMGTTARELIERAGGVSGDG--QLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKA 303

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS  GT  +IV+D S   +  + R   FY  ESCG CTPCREG   + ++++R   G  +
Sbjct: 304 GSMFGTGMLIVLDGSACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGR 363

Query: 372 KREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + +++LL   +      GR+ C L   A  P+   +  F    E R+ +  R
Sbjct: 364 RADLELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGER 415


>gi|77463676|ref|YP_353180.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|77388094|gb|ABA79279.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Rhodobacter
           sphaeroides 2.4.1]
          Length = 416

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 152/412 (36%), Positives = 220/412 (53%), Gaps = 15/412 (3%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK--- 71
            +  +L++  + G ++ VD+        II+ V+A+ L GRGGAGF  G KW FMP+   
Sbjct: 14  RRPHTLAEWRAEGGYEAVDRARSMAPAEIIDMVEAAHLNGRGGAGFPAGRKWRFMPERGT 73

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
              + P YL+VN DE EPG  KDR ++   PH +IEG +I + A  A  A + +R E+  
Sbjct: 74  SPGEGPSYLIVNGDEMEPGAFKDRFLLEALPHQVIEGAIITARATHADEAIVLIRDEYRP 133

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              +++ A+ E   +GLLG       D+ I VH  AG YI GEETAL+ +LEG +  PR 
Sbjct: 134 GIAAVERAIHEARDAGLLG-------DLAIRVHPSAGRYIVGEETALITALEGHRAVPRK 186

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PPFPA  GL+G PTTVNNVE+I++VP IL  G   +    R    GTKL+ +SG V  P
Sbjct: 187 RPPFPAQSGLWGRPTTVNNVETISLVPHILSLGPQRFRALSRTEEGGTKLYGVSGRVKRP 246

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E  M  T  ELIE+  G    G   L A  PGG +       ++    +D+  + + 
Sbjct: 247 GLFEAPMGTTARELIERAGGVSGDG--QLRAFQPGGGASGFFGPDRL-DLPLDFGHVAKA 303

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           GS  GT  +IV+D +   +  + R   FY  ESCG CTPCREG   + ++++R   G  +
Sbjct: 304 GSMFGTGMLIVLDGTACPVGFLARHMRFYARESCGWCTPCREGLPLVAKILDRFAAGQGR 363

Query: 372 KREIDLLYEVSKNI--EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           + +++LL   +      GR+ C L   A  P+   +  F    E R+ +  R
Sbjct: 364 RADLELLQMTAAEAAPRGRSFCDLMGGAMAPLASGLSMFAAEFEARLAEGER 415


>gi|159043830|ref|YP_001532624.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Dinoroseobacter shibae DFL 12]
 gi|157911590|gb|ABV93023.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Dinoroseobacter shibae DFL 12]
          Length = 565

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/398 (35%), Positives = 208/398 (52%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             ++L+   + G +  +  +   G  + +  +VK SGLRG GGAGF +G KW F+     
Sbjct: 186 DYETLAAYRAEGGYGVLRDLRASGDWEVVQAQVKQSGLRGLGGAGFPSGTKWGFVRANPG 245

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   +IY+R E+    E
Sbjct: 246 --PRYLAVNGDEGEPGTFKDRHYLERVPHLFLEGMLIAAWAVEAERCYIYMRDEYPAVLE 303

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+  +     +G+            I +  GAGAYICGEE+A++ES+EGK+G PR +PP
Sbjct: 304 ILRREIAALEEAGIAEPG-------HIELRRGAGAYICGEESAMIESIEGKRGMPRHRPP 356

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           + A VGL+G PT V+NVE++  +  I R G    S     +  G + +S+SG V  P   
Sbjct: 357 YVAQVGLFGRPTLVHNVETLHWIARICREGPEVLSATTHNDRVGLRSYSVSGRVARPGVY 416

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  ++I+   G          A  PGG S   LPA       +D+D L+ +G+ 
Sbjct: 417 LLPAGSTILDIIDAAGGM--AEGHVFKAFQPGGPSSGLLPASA-ADVPLDFDTLQPLGTF 473

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A++ +
Sbjct: 474 IGSAAVVVLSDQDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QAERWD 527

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             LL E+   +   +IC LG AA  PI   IK+F   +
Sbjct: 528 AGLLSELCTAMADASICGLGQAAPNPILSTIKHFPEEV 565


>gi|163733313|ref|ZP_02140756.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149]
 gi|161393101|gb|EDQ17427.1| formate dehydrogenase, beta subunit [Roseobacter litoralis Och 149]
          Length = 568

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/396 (37%), Positives = 216/396 (54%), Gaps = 19/396 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           ++ SD ++ G ++ +  + E G  + +  +V ASGLRG GGAGF +G KW F+       
Sbjct: 191 ETFSDYVAEGGYETLKTLRETGDWEKVQEDVLASGLRGLGGAGFPSGKKWGFVRANPG-- 248

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  AFIY+R E+    E L
Sbjct: 249 PRYLAVNGDEGEPGTFKDRYYLERVPHLFLEGMLIAAWAVEAETAFIYMRDEYPAVLEIL 308

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
              +     +G++           I +  GAGAYICGEE+A++ES+EGK+G PR +PPF 
Sbjct: 309 AREIKALEEAGIVTPGY-------IDLRRGAGAYICGEESAMIESIEGKRGMPRHRPPFV 361

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VG++G PT V+NVE++  V  I R G    S   +   +G + +S+SG V  P     
Sbjct: 362 AQVGVFGQPTLVHNVETLHWVTRICREGPEVLSATEKNGRKGLRSYSVSGRVAQPGVYLL 421

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++IE   G          A  PGG S   LPA  +    +D+D L+ +GS +G
Sbjct: 422 PAGSTITDIIEAAGGM--ADGHLFKAYQPGGPSSGILPAS-ISDVPLDFDTLQPLGSFIG 478

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A + +  
Sbjct: 479 SAAVVVLSDKDSARAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADQWDTG 532

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL E+S  +   +IC LG AA  PI+ ++K+F   I
Sbjct: 533 LLEELSTAMVDASICGLGQAAPNPIRMVMKHFPEEI 568


>gi|260431154|ref|ZP_05785125.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414982|gb|EEX08241.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 567

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 216/398 (54%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             ++ +  +  G +  + ++ E G  + +  ++ ASGLRG GGAGF +G KW F+    +
Sbjct: 188 DYETFATYVENGGYTKLKELREGGDWEAVQEQILASGLRGLGGAGFPSGKKWGFVR--VN 245

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E+    E
Sbjct: 246 DGPRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAQTCFIYMRDEYPAVLE 305

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+  +     +G++           I +  GAGAYICGEE+A++ES+EGKKG PR +PP
Sbjct: 306 ILRREIAALEQAGIVEKGY-------IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPP 358

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           F A VG++G PT V+NVE++  V  I R G    S   +   +G + +S+SG V      
Sbjct: 359 FVAQVGVFGRPTLVHNVETLYWVSRICREGPEILSSVEKNGRKGLRCYSVSGRVAKSGVY 418

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  ++IE   G          A  PGG S   LPA  M    +D+D L+  G+ 
Sbjct: 419 LLPAGSTILDVIEAAGGMAL--GHAFKAYQPGGPSSGLLPAS-MDDIPLDFDTLQPHGTF 475

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A+K +
Sbjct: 476 IGSAAVVVLSEQDTARDAALNMLRFFEDESCGQCTPCRAGCEKAVKLM------QAEKWD 529

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            DLL ++ + +   +IC LG AA  PI+ ++K+F   I
Sbjct: 530 TDLLEDLCQVMGDASICGLGQAAPNPIRLVMKHFADEI 567


>gi|254670961|emb|CBA07639.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria
           meningitidis alpha153]
          Length = 331

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/321 (49%), Positives = 206/321 (64%), Gaps = 3/321 (0%)

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGY 157
              PH LIEG +IA +A+GA   + Y+ GE     +  +AA+++  A+G LG N     +
Sbjct: 1   MFNPHALIEGMIIAGYAMGAKAGYNYIHGEIFEGYQRFEAALEQARAAGFLGKNILGSDF 60

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           + ++  HHG GAYICGEETALLESLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ + V
Sbjct: 61  EFELFAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFSSV 120

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           P I+R G   ++  G  N  GTKLF ISGHV  P   E  +   F E+++   G    G 
Sbjct: 121 PFIIRDGGQAFADKGIPNAGGTKLFCISGHVERPGNYEVPLGTPFAEVLKMAGGM--RGG 178

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L AVIPGGSS P LPA  M    MDYD + + GS LG+ A+IVMD    ++KA+ RLS
Sbjct: 179 KKLKAVIPGGSSAPVLPADIMMQTNMDYDSISKAGSMLGSGAIIVMDEDVCMVKALERLS 238

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            FY  ESCGQCTPCREGTGW+ R++ R+V+G  +  ++DLL  V K + GRTICAL DAA
Sbjct: 239 YFYYDESCGQCTPCREGTGWLYRIVHRIVEGKGRMEDLDLLDSVGKQMAGRTICALADAA 298

Query: 398 AWPIQGLIKNFRPLIEERIDQ 418
            +P++   K+FR      I+ 
Sbjct: 299 VFPVRSFTKHFRDEFVHYIEH 319


>gi|194292240|ref|YP_002008147.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226144|emb|CAQ72091.1| tungsten-containing formate dehydrogenase beta subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 569

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 213/395 (53%), Gaps = 20/395 (5%)

Query: 21  SDSMSRGHWDNVDKILEKG---RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
                 G +  + K L  G    D ++  ++ SGLRG GGAGF TG KW  +    +  P
Sbjct: 191 DAYRRDGGY-ALLKALAGGGLEPDAVLATMEDSGLRGLGGAGFPTGRKWRIVRGEAA--P 247

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             + VN DE EPGT KDR  +  +PH  +EG +IA+  +     +IY+R E+   R  L 
Sbjct: 248 RLMAVNIDEGEPGTFKDRVYLERDPHRFLEGMLIAARVVDVAAIYIYLRDEYAGCRALLA 307

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+ +      +    +      I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A
Sbjct: 308 EALQQLQQDPPVARLPR------IELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVA 361

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+G PT  +N E++  V  I+ +GA W++  GR   +G + FS+SG V  P      
Sbjct: 362 QVGLFGRPTLEHNFETLYWVRDIIEKGAEWFASQGRNGRKGLRSFSVSGRVRRPGVHLAP 421

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  ELI+++CGG+          +PGG+S   LPA  M    +D+D L+  G  +G+
Sbjct: 422 AGITVRELIDEYCGGM-LDGHAFYGYLPGGASGGILPAA-MGNIPLDFDTLQPYGCFIGS 479

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AA++++       +A   L  F+KHESCGQCTPCR GT   + ++         K ++  
Sbjct: 480 AAIVILSDHDSATQAARNLMHFFKHESCGQCTPCRTGTAKTLDLI------RQPKWDLAA 533

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L ++S  +   +IC LG AA  P+  +IK F   +
Sbjct: 534 LDDLSAVMRDASICGLGQAAPNPVDCVIKYFPHEL 568


>gi|116749388|ref|YP_846075.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116698452|gb|ABK17640.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 421

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 167/420 (39%), Positives = 241/420 (57%), Gaps = 7/420 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           +F N    +  +L +  + G +  +  +L ++    +   V  +GLRGRGGAGF    KW
Sbjct: 6   LFRNRKPDRIVTLDEYRAGGGYRALGDVLRKRSAGEVCRVVDEAGLRGRGGAGFPASKKW 65

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             +P      P YLV N+DE EPGT KDR ++  +PHT+IEG ++A +AIGA  AF++VR
Sbjct: 66  ESVP-ADGAYPRYLVANSDEMEPGTFKDRVLIHADPHTIIEGMILAGYAIGASKAFLFVR 124

Query: 127 GEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
             +      ++  +     +G LG N     Y +DI+VH   G YICGE +ALL ++ GK
Sbjct: 125 PSYESSAAIMERELRIAREAGYLGRNILGTDYSLDIVVHRSGGRYICGEASALLNAVMGK 184

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           +  P+  PP+P   GL+  PT VNNVE++A VP ILR G  W+ G  R    GTKLF IS
Sbjct: 185 RPNPQRPPPYPTVKGLWERPTVVNNVETLANVPHILRNGPEWFRGLSRSKTPGTKLFCIS 244

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V+ P  VE  M    +E+IE+H GG+  G +   A +PGG+S   L    +  A MD+
Sbjct: 245 GKVSRPGCVELPMGTRLNEIIEEHAGGMAPGSE-FKACLPGGASTYFLTRDNLH-AGMDF 302

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           DG+  + + LGT AVIV DR T ++ A   L  F+  ESCG CTPCREG  +M  ++ER+
Sbjct: 303 DGMAAVKNRLGTGAVIVFDRKTCLVGATLNLMRFFARESCGWCTPCREGLPYMRDLLERI 362

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
            +G  ++  I +L  +S+ +   + CAL   AA P++ L+ +F   + E I Q  RC F+
Sbjct: 363 EEGEGREEYIPMLRLMSRQVW-NSYCALAPGAASPVESLLDHFADEVHEHISQ-KRCPFK 420


>gi|126728990|ref|ZP_01744805.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37]
 gi|126710920|gb|EBA09971.1| formate dehydrogenase, beta subunit [Sagittula stellata E-37]
          Length = 561

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 217/396 (54%), Gaps = 19/396 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           ++LS  +  G +  +  +  +G  + +  ++ ASGLRG GGAGF +G KW F+       
Sbjct: 184 ETLSAYLEEGGYSELKALRAEGDWEEVQEKILASGLRGLGGAGFPSGRKWGFVRANPG-- 241

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YL VN DE EPGT KDR  +  EPH  +EG +IA++A+ A   FIY+R E+    + L
Sbjct: 242 PRYLAVNGDEGEPGTFKDRVYIEGEPHVFLEGVLIAAWAVEAERCFIYMRDEYPGIIDIL 301

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +  +     +G++  +        I +  GAGAYICGEE+A++ES+EGK+G PR +PP+ 
Sbjct: 302 RKEIRALEEAGIVEKDY-------IDLRRGAGAYICGEESAMIESIEGKRGIPRHRPPYV 354

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VG++  PT V+NVE++  V  I R G    S   +   +G + +S+SG V  P     
Sbjct: 355 AQVGIFDRPTLVHNVETLYWVSKICREGPQILSSVEKNGRKGLRSYSVSGRVKSPGVHLL 414

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++I+   G +      L A  PGG S   LPA  M    +D+D L+  GS +G
Sbjct: 415 PAGSTIMDIIKAAGGML--DGHRLKAYQPGGPSSGLLPAS-MNDIPLDFDTLQPHGSFIG 471

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+V+     +  A   +  F++ ESCGQCTPCR G    +++M      +A K +  
Sbjct: 472 SAAVVVLSDQDSVRDAALNMLQFFEDESCGQCTPCRVGCEKAVKLM------MADKWDQS 525

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL E+ + +   +IC LG AA  PI+  IK+F   I
Sbjct: 526 LLEELCQTMTDASICGLGQAAPNPIRLTIKHFPEEI 561


>gi|302878799|ref|YP_003847363.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Gallionella capsiferriformans ES-2]
 gi|302581588|gb|ADL55599.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Gallionella capsiferriformans ES-2]
          Length = 626

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/428 (35%), Positives = 217/428 (50%), Gaps = 30/428 (7%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKI-------------LEKGRDWIINEVKASGLRG 54
           I  N     G +L  ++ RG      +              L++  D  + E+K S LRG
Sbjct: 180 ILLNSNFQAGSALKAALIRGE-AATAQASQGYIAHMIDPAGLDRAADATLQEIKISKLRG 238

Query: 55  RGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASF 114
           RGGAGFSTGMKW F      D  HY+V NADE EPGT KDR ++      + EG  + ++
Sbjct: 239 RGGAGFSTGMKWEFCRNAKGD-AHYVVCNADEGEPGTFKDRVLLNSYADLVFEGMTLCAY 297

Query: 115 AIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYIC 172
            IGA   F+Y+RGE+      LQA +       LLGS    +  +D DI +H GAGAYIC
Sbjct: 298 VIGAKKGFLYLRGEYRYLLAPLQAVLQRRREQNLLGSRILGQAAFDFDIEIHLGAGAYIC 357

Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232
           GEE+AL+ESLEGK+G PR +PP+P   G    PT V+NVE+ A    I   G +WY+G G
Sbjct: 358 GEESALIESLEGKRGTPRNRPPYPVTAGYLNQPTVVSNVETFASTSLISLHGGAWYAGIG 417

Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
            EN+ G+KLFS+SG  +YP   E    +T  +++            N  AV   G S  C
Sbjct: 418 AENSSGSKLFSVSGDCDYPGIYEYPFGVTVAQVLADCGA------KNTQAVQISGPSGMC 471

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           + A       + +D +   G      A +V D+  D+ +       F+ HESCG CTPCR
Sbjct: 472 I-AAHEFDRRISFDDIPTAG------AFMVFDQRRDMFEVARNFVHFFAHESCGFCTPCR 524

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            GT  +  +M++L +G     ++  + ++   ++  + C LG  A  P+   +  FRP  
Sbjct: 525 VGTALLSNLMDKLNEGQGSPYDLAEIEKLDSLLQSTSHCGLGRTACNPVLHTLAKFRPAY 584

Query: 413 EERIDQYH 420
           E R+    
Sbjct: 585 ECRLSHQE 592


>gi|209885822|ref|YP_002289679.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha
           carboxidovorans OM5]
 gi|209874018|gb|ACI93814.1| tungsten-containing formate dehydrogenase beta subunit [Oligotropha
           carboxidovorans OM5]
          Length = 570

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/394 (36%), Positives = 212/394 (53%), Gaps = 23/394 (5%)

Query: 21  SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
              +++G +  ++ +   +  ++ I+  +  + LRG GGAGF TG KW  +       P 
Sbjct: 191 DSYVAQGGYALLNSLRSGQTSKEDILKALDGASLRGLGGAGFPTGRKWRAVMGEPG--PR 248

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KDR  +  +PH  +EG +I +  + A   +IY+R E+   RE L  
Sbjct: 249 LMAVNGDEGEPGTFKDRFYLETDPHRFLEGMLIGAHIVDAGEVYIYLRDEYPASREILAR 308

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            + +    G             + +  GAGAYICGEE++LLES+EGK+G PR KPP+P  
Sbjct: 309 EIAKLPPGGP-----------TLHLRRGAGAYICGEESSLLESIEGKRGLPRHKPPYPFQ 357

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+G PT +NNVE++  V  I+++G  W+   GR    G + +S+SG V  P       
Sbjct: 358 VGLFGLPTLINNVETLWWVRDIVQKGGDWWQSHGRNERHGLRSYSVSGRVKNPGVKLAPA 417

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +T  ELIE+ C G+        A +PGG+S   LPA  M    +D+  L++ G  +G+A
Sbjct: 418 GVTIKELIEEFCDGMA-DGHQFRAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AV+V+    DI  A   L  F++ ESCGQCTPCR GT     +ME      +     DLL
Sbjct: 476 AVVVLSDKDDIKGAALNLMKFFEDESCGQCTPCRIGTQKAAALME------SHVWNRDLL 529

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            E+S+ +   +IC LG AA+ P+  +I+ F    
Sbjct: 530 MELSQTMRDASICGLGQAASNPLTSVIRYFPDEF 563


>gi|254512174|ref|ZP_05124241.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535885|gb|EEE38873.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 567

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/398 (35%), Positives = 215/398 (54%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             ++ +   + G +  + ++ + G  + + +++ +SGLRG GGAGF +G KW F+     
Sbjct: 188 DYETYAAFTANGGYTKLKELRDGGDWEKVQDDILSSGLRGLGGAGFPSGKKWGFVRMNEG 247

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E+    E
Sbjct: 248 --PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAETCFIYMRDEYPAVLE 305

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+  +     +G++           I +  GAGAYICGEE+A++ES+EGKKG PR +PP
Sbjct: 306 ILRREIAALEEAGIVEKGY-------IDLRRGAGAYICGEESAMIESIEGKKGLPRHRPP 358

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           F A VG++  PT V+NVE++  V  I R G    +   +   +G + +S+SG V  P   
Sbjct: 359 FVAQVGIFNRPTLVHNVETLYWVSKICREGPECLNSTEKNGRKGLRSYSVSGRVAKPGVY 418

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  ++IE   G          A  PGG S   LPA  +    +D+D L+ +G+ 
Sbjct: 419 LLPAGSTILDVIEAAGGM--AEGHQFKAYQPGGPSSGLLPAS-IDDVPLDFDTLQPLGTF 475

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A K +
Sbjct: 476 IGSAAVVVLSDQDTARDAALNMLRFFEDESCGQCTPCRAGCEKAVKLM------QADKWD 529

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            DLL ++ + +   +IC LG AA  PI+ +IK+F   I
Sbjct: 530 QDLLEDLCQVMGDASICGLGQAAPNPIRLVIKHFADEI 567


>gi|73538415|ref|YP_298782.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
 gi|72121752|gb|AAZ63938.1| NADH dehydrogenase (quinone) [Ralstonia eutropha JMP134]
          Length = 414

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/398 (35%), Positives = 208/398 (52%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           G  L   ++RG  + + K L    D I+ E++ + LRG GGAGF T  KW  +    +  
Sbjct: 16  GADLQAWLARGGGEGLAKALS-NPDAILAEIEQADLRGMGGAGFPTHRKWRPVAAAAA-V 73

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ N +E EPGT KDR ++ H PH +IEG +IA+ A  A+   +YV        E  
Sbjct: 74  DKYIICNGNEDEPGTFKDRFLLEHTPHQVIEGALIAAAATRANHVVLYVNPHQPLSLEMT 133

Query: 137 QAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + AV +      L    +L G  + + V   +G YI GEETA++ S+EG    PR KPP+
Sbjct: 134 RQAVQQWQTHAQLAELERLLGGPLTLRVVPSSGLYIGGEETAVIASVEGTFPFPRRKPPY 193

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA+ G++G PT VNN E++A VP ILR GA WY   G     GTKL+S+SG V  P   E
Sbjct: 194 PADSGVHGAPTIVNNTETLAHVPGILRHGAQWYRALGVAQAAGTKLYSLSGDVLRPGLYE 253

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  + + LI +  GG+        AV  GG S   L    +    +D+D +++  S L
Sbjct: 254 LPMGTSLETLIFEFGGGM-LQGKEFKAVFTGGPSNTLLTKRDL-DVALDFDSVRKRRSRL 311

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+IV+   + I++ +     F+   SCGQC PC+ GT  +MR++ R+  G   + ++
Sbjct: 312 GTGAMIVVSEGSSIVRKVAEYVSFFAQGSCGQCPPCKGGTFQLMRLLNRIDTGRGVRADL 371

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           + L  + + + G   C L D A   +   +  FR   E
Sbjct: 372 EALENLCRILPGSGRCGLIDGAVTVVDSSLHQFRDEYE 409


>gi|19527833|gb|AAL90031.1| AT08706p [Drosophila melanogaster]
          Length = 462

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/423 (42%), Positives = 245/423 (57%), Gaps = 23/423 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W    ++LE+G +WI+ +               
Sbjct: 58  LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQ--------------- 102

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               W F+ +  S++ P  ++VN  E EPGTCKDRDI+RHEPH LIEG ++   A+G   
Sbjct: 103 ----WEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 158

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG++    G   D++V  G   Y+CGEETA++
Sbjct: 159 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 217

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P+ V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 218 NCLMGKLGRPRRRPPFLTEKGYFEHPSLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 277

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ +SG VN PCTVEE MSI   +LIE+H GG++GGWDNL AV PGG S P L      
Sbjct: 278 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 337

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 338 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 397

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 398 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRQIEERLLK 457

Query: 419 YHR 421
           Y +
Sbjct: 458 YAK 460


>gi|310779016|ref|YP_003967349.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309748339|gb|ADO83001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 565

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 138/387 (35%), Positives = 217/387 (56%), Gaps = 14/387 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + + +++ +D I+ +++ S LRGRGGAGF TG KW    +   D   ++V NADE EPGT
Sbjct: 191 LRETIKRDKDSILEDIEKSNLRGRGGAGFPTGFKWRLAKEEKKD-KKFIVCNADEGEPGT 249

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR I+      ++EG  IA++ IGA   FIY+RGE+   RE+L+  +++   +GLLG+
Sbjct: 250 FKDRYILHKNFQRVLEGMSIAAYVIGASKGFIYLRGEYTYIRETLEKEIEKRRRAGLLGN 309

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            ++ G + DI +  GAGAYICGEETAL+ESLEGK+G+PR KPP+P + G    PT VNNV
Sbjct: 310 ETEKGLNFDIEIRMGAGAYICGEETALIESLEGKRGEPRNKPPYPVDTGFMNYPTLVNNV 369

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E+   V  I  +G   +  +G ++++GTK FSISG        E    +T D+++    G
Sbjct: 370 ETFLNVNLICEKGVESFGQYGTDSSKGTKFFSISGDCKNEGIYELPFGVTIDKVVALAEG 429

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                  ++ AV  GG++  C+        I          +     ++I+ + + D++ 
Sbjct: 430 ------KDIKAVQIGGAAGECVQKNDFSKRI-------AFEAASTGGSIILFNENRDMLD 476

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
                  F+  ESCGQCTPCREGT  ++  +  L KG      ++ L E+ + +E  + C
Sbjct: 477 IAENFMEFFVEESCGQCTPCREGTYRILEGIRLLKKGKCSVTYLNKLLELCETVELASKC 536

Query: 392 ALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            LG  +    + +++NF+  I  R+ +
Sbjct: 537 GLGQLSTVAFRSIVENFKEEILGRLPE 563


>gi|116695640|ref|YP_841216.1| tungsten-containing formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
 gi|113530139|emb|CAJ96486.1| Tungsten-containing formate dehydrogenase beta subunit [Ralstonia
           eutropha H16]
          Length = 569

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/394 (35%), Positives = 210/394 (53%), Gaps = 18/394 (4%)

Query: 21  SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
                 G +  +  +   +     ++  ++ SGLRG GGAGF TG KW  +    +  P 
Sbjct: 191 DAYRKDGGYALLKSLASGDLDPAAVLCTMEDSGLRGLGGAGFPTGRKWRIVQNEPA--PR 248

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + +N DE EPGT KDR  +  +PH  +EG +IA+  +     +IY+R E+   RE L  
Sbjct: 249 LMAINIDEGEPGTFKDRVYLERDPHRFLEGMLIAATVVNVSAIYIYLRDEYAGCRELL-- 306

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
                     L  +  +     I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ A 
Sbjct: 307 ----AEELQRLQQDPPIPGLPTIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQ 362

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+G PT  +N E++  V  I+ +GA W++  GR   +G + FS+SG V  P       
Sbjct: 363 VGLFGRPTLEHNFETLYWVRDIIEKGAEWFASQGRNGRKGLRSFSVSGRVKRPGVHLAPA 422

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  ELI+++CGG+          +PGG+S   LPA  M    +D+D L+  G  +G+A
Sbjct: 423 GITVRELIDEYCGGM-LDGHAFYGYLPGGASGGILPAS-MGNIPLDFDTLQPYGCFIGSA 480

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AV+++       +A   L  F+KHESCGQCTPCR GT   + ++         K ++  L
Sbjct: 481 AVVILSDQDSATQAARNLMHFFKHESCGQCTPCRTGTAKTLDLI------RQPKWDLPAL 534

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++S  +   +IC LG AA  P+  +IK F   +
Sbjct: 535 DDLSAVMRDASICGLGQAAPNPVDCVIKYFPHEL 568


>gi|254452717|ref|ZP_05066154.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus
           238]
 gi|198267123|gb|EDY91393.1| formate dehydrogenase, beta subunit [Octadecabacter antarcticus
           238]
          Length = 571

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/404 (34%), Positives = 212/404 (52%), Gaps = 19/404 (4%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSF 68
           T+ +    +      + G +  +  + + G  + +   VK SGLRG GGAGF +G KW F
Sbjct: 176 THAHVQDYEGFDAYAADGGYATLKDLRKNGNWEDVQASVKESGLRGLGGAGFPSGTKWGF 235

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           +       P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E
Sbjct: 236 VRGNVG--PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAETCFIYMRDE 293

Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +    + L   +     +G++           I +  GAGAYICGEE+A++ES+EGK+G 
Sbjct: 294 YPAVLQILADEIAALEQAGIVQKGF-------IDLRRGAGAYICGEESAMIESIEGKRGM 346

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR +PP+ A VG++  PT V+NVE++  V  I R G    +       +G + +S+SG V
Sbjct: 347 PRHRPPYVAQVGVFNRPTLVHNVETLLWVARICREGPECLNSTELNGRKGLRSYSVSGRV 406

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P         T  ++I   CGG+        A  PGG S   LPA  +    +D+D L
Sbjct: 407 ANPGVYLLPAGSTITDII-DACGGMA-DGHVFKAYQPGGPSSGLLPAS-IHDVPLDFDTL 463

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
           + +G+ +G+AAV+V+  +     A   +  F++ ESCGQCTPCR G    +++M      
Sbjct: 464 QPLGTFIGSAAVVVLSEADSARGAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------ 517

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            A   +  LL E+S  +   +IC LG AA  PI+ ++K+F   +
Sbjct: 518 QADTWDQGLLEELSTAMVDASICGLGQAAPNPIRMVLKHFADEV 561


>gi|24653817|ref|NP_611027.1| CG8102, isoform B [Drosophila melanogaster]
 gi|21627150|gb|AAM68529.1| CG8102, isoform B [Drosophila melanogaster]
          Length = 462

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 179/423 (42%), Positives = 244/423 (57%), Gaps = 23/423 (5%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DR+F NLYG     L  +  RG W    ++LE+G +WI+ +               
Sbjct: 58  LDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQ--------------- 102

Query: 62  TGMKWSFMPKVCSDR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               W F+ +  S++ P  ++VN  E EPGTCKDRDI+RHEPH LIEG ++   A+G   
Sbjct: 103 ----WEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGVAMGCGR 158

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
           A +Y+R  F  E  +L  A+ E Y  GLLG++    G   D++V  G   Y+CGEETA++
Sbjct: 159 AIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCGEETAMI 217

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK G+PR +PPF    G +  P  V N ESIAVVPTILRRG+ W++G GR  N GT
Sbjct: 218 NCLMGKLGRPRRRPPFLTEKGYFEHPCLVINAESIAVVPTILRRGSQWWAGLGRSYNTGT 277

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+ +SG VN PCTVEE MSI   +LIE+H GG++GGWDNL AV PGG S P L      
Sbjct: 278 KLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAG 337

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +MD+D L + GSG G  AVIVM +  D +  + R   F++  +C QC+ CR+G  W+ 
Sbjct: 338 KVLMDFDSLTDAGSGFGCGAVIVMTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLP 397

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEG-RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +  R VKG     EID    ++  +   + ICAL  +     + L++ F   IEER+ +
Sbjct: 398 EIFARFVKGQTHPHEIDWTLVIADKMRNSKPICALAYSQVSVAESLVRMFSRKIEERLLK 457

Query: 419 YHR 421
           Y +
Sbjct: 458 YAK 460


>gi|27377427|ref|NP_768956.1| NADH-ubiquinone oxidoreductase chain F [Bradyrhizobium japonicum
           USDA 110]
 gi|27350571|dbj|BAC47581.1| blr2316 [Bradyrhizobium japonicum USDA 110]
          Length = 567

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 146/396 (36%), Positives = 217/396 (54%), Gaps = 23/396 (5%)

Query: 21  SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
              +  G +  ++++      +D I+  ++ S LRG GGAGF TG KW  +       P 
Sbjct: 190 DAYVQDGGYKLLERLRSGAVSKDDILRLLEDSSLRGLGGAGFPTGRKWRAVLGEPG--PR 247

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KDR  + ++PH  IEG +I +  + A   +IY+R E+   RE L+ 
Sbjct: 248 LMAVNGDEGEPGTFKDRVYLNNDPHRFIEGTLIGAHIVEASDVYIYIRDEYPAAREILER 307

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            + +    G             + +  GAGAYICGEE++LLES+EGK+G PR KPP+P  
Sbjct: 308 EIAKLPPGGP-----------TLHMRRGAGAYICGEESSLLESIEGKRGLPRHKPPYPFQ 356

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+G PT +NNVE++  V  I+ +GA W+ G GR    G + FS+SG V  P       
Sbjct: 357 VGLFGLPTLINNVETLWWVRDIVEKGADWWKGHGRHERHGLRSFSVSGRVKNPGMKLAPS 416

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  ELI+++CGG+        A +PGG+S   LPA  M    +D+  L++ G  +G+A
Sbjct: 417 GITVRELIDEYCGGMA-DGHTFYAYLPGGASGGILPAS-MDDIPLDFGTLEKYGCFIGSA 474

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           A++++ +   +  A   L  F++ ESCGQCTPCR GT     +M++            LL
Sbjct: 475 AIVILSQKDSVRAAALNLMKFFEDESCGQCTPCRVGTQKAALLMQK------PVWNRALL 528

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            E+S+ +   +IC LG AA+ P+  +IK F    +E
Sbjct: 529 EELSQAMRDASICGLGQAASNPLTTVIKYFPDEFKE 564


>gi|89902617|ref|YP_525088.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Rhodoferax ferrireducens T118]
 gi|89347354|gb|ABD71557.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Rhodoferax ferrireducens T118]
          Length = 603

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/390 (38%), Positives = 216/390 (55%), Gaps = 16/390 (4%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             + + L +G D  + E+K S LRGRGGAGF+TG+KW    +      H +V NADE EP
Sbjct: 194 AALTQSLARGADATLAEIKRSNLRGRGGAGFATGLKWELCRQAP-GTEHIVVCNADEGEP 252

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR ++  +   + EG  +A+  +GA   F+Y+RGE+    E LQA +    A  LL
Sbjct: 253 GTFKDRVLLSRQADAVFEGMTVAAHVLGARRGFLYLRGEYRFLLEPLQAVLQRRRAEQLL 312

Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           G++   + G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PPFPA  G  G PT 
Sbjct: 313 GTHILGQAGFDFDIAIHVGAGAYVCGEESALIESLEGKRGTPRIRPPFPAEHGYLGHPTL 372

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+   V  I + G + ++G G   + GTK+ S+SG    P   E  +      L+ 
Sbjct: 373 VNNVETFCAVAHIAQHGGALWAGIGTPKSTGTKIHSVSGDCARPGLYEYPLGTPVSRLLA 432

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                      +  AV  GG S  CL A +    I   D            A +V DRS 
Sbjct: 433 DCGA------RDTQAVQVGGPSGVCLAADEFERRIAFED-------VPTAGAFMVFDRSR 479

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           D+ +     + F+ HESCG CTPCR GT  +++ M++L  G   + ++D+L+E+ + +  
Sbjct: 480 DMFEVARGFAHFFAHESCGFCTPCRVGTALLVKRMDKLAGGHGSRDDLDVLFELDRLLHS 539

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417
            T C LG +A  P++  +  FRP  E+R+ 
Sbjct: 540 TTHCGLGASACNPLRDTVLKFRPAYEQRLQ 569


>gi|294338444|emb|CAZ86770.1| Tungsten-containing formate dehydrogenase beta subunit [Thiomonas
           sp. 3As]
          Length = 597

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/395 (35%), Positives = 216/395 (54%), Gaps = 21/395 (5%)

Query: 21  SDSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
               +RG +  +   +  G+   + +I  +  SGLRG GGAGF  G KW  +    +  P
Sbjct: 220 DAYRARGGY-ALAAAVASGQRSAEEVIKALSDSGLRGLGGAGFPAGRKWGIVRNYPA--P 276

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             + VN DE EPGT KDR  +  +PH  +EG +IA+  +G    ++Y+R E+   R  L+
Sbjct: 277 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGVLIAAQVVGISTCYLYLRDEYHGGRAVLE 336

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
             +    A               I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A
Sbjct: 337 REIARLQADPPCAL-------PHIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIA 389

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            +GL+G PT  +N E++  V  I+ RGA+W+S FG    +G + FS+SG V  P      
Sbjct: 390 EIGLFGRPTLEHNFETLYWVRDIVERGAAWFSSFGLNGRKGLRSFSVSGRVKSPGVKLAP 449

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  EL++ +CGG+      L A +PGG+S   LPA ++    +D+D L+  G  +G+
Sbjct: 450 AGITLKELVDTYCGGM-LDGHTLYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGS 507

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AA+IV+        A   +  F++HESCGQCTPCR GTG   ++M       A + +   
Sbjct: 508 AAIIVLSDQDRARDAALNVMRFFEHESCGQCTPCRVGTGKAAQLM------QAPQWDHAT 561

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L ++++ +   +IC LG AA  P++ +   F   +
Sbjct: 562 LEDLNQVMSDASICGLGQAAPNPVRCVQTYFAHEV 596


>gi|296134508|ref|YP_003641750.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thiomonas intermedia K12]
 gi|295794630|gb|ADG29420.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thiomonas intermedia K12]
          Length = 626

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 140/395 (35%), Positives = 216/395 (54%), Gaps = 21/395 (5%)

Query: 21  SDSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
               +RG +  +   +  G+   + +I  +  SGLRG GGAGF  G KW  +    +  P
Sbjct: 220 DAYRARGGY-ALAAAVASGQRSAEEVIKALSDSGLRGLGGAGFPAGRKWGIVRNYPA--P 276

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             + VN DE EPGT KDR  +  +PH  +EG +IA+  +G    ++Y+R E+   R  L+
Sbjct: 277 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGVLIAAQVVGISTCYLYLRDEYHGGRAVLE 336

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
             +    A               I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A
Sbjct: 337 REIARLQADPPCAL-------PHIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIA 389

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            +GL+G PT  +N E++  V  I+ RGA+W+S FG    +G + FS+SG V  P      
Sbjct: 390 EIGLFGRPTLEHNFETLYWVRDIVERGAAWFSSFGLNGRKGLRSFSVSGRVKSPGVKLAP 449

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  EL++ +CGG+      L A +PGG+S   LPA ++    +D+D L+  G  +G+
Sbjct: 450 AGITLKELVDTYCGGM-LDGHTLYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGS 507

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AA+IV+        A   +  F++HESCGQCTPCR GTG   ++M       A + +   
Sbjct: 508 AAIIVLSDQDRARDAALNVMRFFEHESCGQCTPCRVGTGKAAQLM------QAPQWDHAT 561

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L ++++ +   +IC LG AA  P++ +   F   +
Sbjct: 562 LEDLNQVMSDASICGLGQAAPNPVRCVQTYFAHEV 596


>gi|239817042|ref|YP_002945952.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus S110]
 gi|239803619|gb|ACS20686.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus S110]
          Length = 612

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/395 (36%), Positives = 220/395 (55%), Gaps = 21/395 (5%)

Query: 21  SDSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +   + G +  +   L   E+  + II  ++ SGLRG GGAGF  G KW  +    +  P
Sbjct: 235 ATYRAHGGY-ALASALVNGEEDAEAIIKTMEDSGLRGLGGAGFPAGRKWRIVRDQPA--P 291

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             + VN DE EPGT KDR  +  +PH  +EG V+A+  +G    +IY+R E+   R  L+
Sbjct: 292 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLVVAAQIVGIEQCYIYLRDEYHDCRALLE 351

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
             +    A               I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A
Sbjct: 352 TELARLQADPPCAL-------PRIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIA 404

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+G PT  +N E++  V  I+ +GA+W+SGFGR   +G + FS+SG V +P      
Sbjct: 405 QVGLFGRPTLEHNFETLYWVRDIVEKGAAWFSGFGRHGRKGLRSFSVSGRVKHPGVKLAP 464

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  ELI+++CGG+     +L A +PGG+S   LPA +M    +D+D L+  G  +G+
Sbjct: 465 AGITVQELIDEYCGGM-LDGHSLYAYLPGGASGGILPA-RMNDIPLDFDTLQPYGCFIGS 522

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AAV+V+ +      A   +  F++HESCGQCTPCR GT     +M           +   
Sbjct: 523 AAVMVLSQHDRARDAALNVMRFFEHESCGQCTPCRVGTAKAAALMHA------PVWDNAT 576

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L ++++ +   +IC LG AA  PI+ + + F   I
Sbjct: 577 LEDLAQVMGDASICGLGQAAPNPIRCIQQYFPEEI 611


>gi|307069590|ref|YP_003878067.1| putative NADH:ubiquinone oxidoreductase, chain F [Candidatus
           Zinderia insecticola CARI]
 gi|306482850|gb|ADM89721.1| putative NADH:ubiquinone oxidoreductase, chain F [Candidatus
           Zinderia insecticola CARI]
          Length = 431

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 157/418 (37%), Positives = 243/418 (58%), Gaps = 9/418 (2%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMK 65
           +  N    +   + + + RG +  + +I+  +  ++ IIN +K + LRGRGGAGF T +K
Sbjct: 12  LLFNKLNTKNWKIKNYIKRGGYKTIRRIIRNKISKNEIINNLKLTRLRGRGGAGFLTWIK 71

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           W+F+ K       YL+ N DE EPGT KD  I  + PH +IEG +IA++ +     + Y+
Sbjct: 72  WNFIDKNT-YYQKYLICNTDEGEPGTFKDLQITINNPHLIIEGMLIAAYTLNIDIGYNYI 130

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
            GE  +     + AV E Y    LG N  K   + ++    G G+YICGEE+AL+ES+EG
Sbjct: 131 HGEVFKIYNIFKKAVLEAYKYNFLGYNIFKSKINFNLYCFRGYGSYICGEESALIESIEG 190

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           KKGQPR KPPFPAN+GL+   T +NN E+ + +  +L+ G   Y  F    N GTK+FSI
Sbjct: 191 KKGQPRFKPPFPANIGLFNKSTLINNAETFSNITILLKIGIKKYLNFSNSKNGGTKIFSI 250

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G++  P   E  + I+  +LI+   G       +L A+IPGG S P +   +++   MD
Sbjct: 251 TGNIKKPGNYEAPLGISLSKLIKLAGG----FKKDLKAIIPGGISTPIIKGKKLKYIYMD 306

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           YD + +  S LG+ A+I+++    I+K +  +S FY  ESCG+C PCREG  W+M+++++
Sbjct: 307 YDEILKFKSMLGSGAIILINNKICILKCLLNISNFYYKESCGKCVPCREGIIWIMKLLKK 366

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +    A+ +++DL+  +  NI G TICA GDA  + I+  IKN+       I  Y++C
Sbjct: 367 IKNNKAKLKDLDLILSIINNITGNTICAFGDAIYFSIKSYIKNYYKEFILHII-YNKC 423


>gi|325681301|ref|ZP_08160830.1| protein HymB [Ruminococcus albus 8]
 gi|324106992|gb|EGC01279.1| protein HymB [Ruminococcus albus 8]
          Length = 378

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/316 (37%), Positives = 184/316 (58%), Gaps = 4/316 (1%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
             IAS+A+GAH  ++YVR E+      LQ A+D+    GLLG N    G+D DI +  GA
Sbjct: 1   MTIASYAVGAHQGYVYVRAEYPVAVHRLQIALDQAREYGLLGKNILGKGHDFDIEIRLGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GA++CGEETALL S+EG +G+PR +PPFPA  GL+G PT +NNVE+ A +  I+R+GA+W
Sbjct: 61  GAFVCGEETALLTSIEGNRGEPRPRPPFPAVKGLFGKPTLLNNVETYANIAQIIRKGAAW 120

Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
           YS  G E ++GTK+F++ G +     VE  M  T  E+  +  GG         A   GG
Sbjct: 121 YSAMGTEKSKGTKVFALGGKITNVGLVEIPMGTTLREI-IEEIGGGIPEGKAFKAAQTGG 179

Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347
            S  C+PA  +    +DY+ L  +GS +G+  +IVMD    ++        F   ESCG+
Sbjct: 180 PSGGCIPAQHI-DTPIDYESLAALGSMMGSGGLIVMDEDNCMVDVSKFYLNFTVDESCGK 238

Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           CTPCR GT  +++++E++  G  +  +++ + +++ +++  ++CALG +A  P+   ++ 
Sbjct: 239 CTPCRVGTRKLLQLLEKITDGKGEMEDLEKIQDLATHMKSSSLCALGQSAPNPVLSTLQY 298

Query: 408 FRPLIEERIDQYHRCN 423
           F       I    +C 
Sbjct: 299 FGDEYLAHIKD-KKCP 313


>gi|71906618|ref|YP_284205.1| NADH dehydrogenase [Dechloromonas aromatica RCB]
 gi|71846239|gb|AAZ45735.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Dechloromonas aromatica RCB]
          Length = 632

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 137/385 (35%), Positives = 205/385 (53%), Gaps = 17/385 (4%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRD 96
           G    ++E+K + LRGRGGAGF+TG+KW         +     +V NADE EPGT KDR 
Sbjct: 225 GPGATLDEIKRANLRGRGGAGFTTGLKWEACRNAPLKAGAQRIVVCNADEGEPGTFKDRV 284

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK-- 154
           ++   P  + EG  +A++A+GA   F+Y+RGE+    + L A +       LLG +    
Sbjct: 285 LLSRNPDLVFEGMTVAAYAVGATRGFVYLRGEYRYMLDHLNAVLAHRRREKLLGKDILGL 344

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
            G D DI +H GAGAY+CGEE+AL+ESLEGK+G PR +PPFP   G    PT VNNVE+ 
Sbjct: 345 PGADFDIEIHVGAGAYVCGEESALIESLEGKRGTPRNRPPFPVTNGYLDQPTIVNNVETF 404

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           A    I   G  WY+  G +++ GTKL S+SG    P   E    ++  +++E       
Sbjct: 405 AAAALIALNGGDWYAAIGTKHSAGTKLLSVSGDCERPGIYEYPFGVSVRQVLEDCGA--- 461

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
               +  AV   G S  C+ A Q    ++ ++ +   G      A  V + + D+ +   
Sbjct: 462 ---RDTQAVQVSGPSGICI-AEQEFDRVIGFEDIPTAG------AFTVFNNTRDMFEVAR 511

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394
               F++HESCG CTPCR GT  +  +M++L  G+    +   + ++++ ++  + C LG
Sbjct: 512 NYVHFFQHESCGFCTPCRVGTSLLKNLMDKLHNGVGSPYDFAEIEKLNQLLQSMSHCGLG 571

Query: 395 DAAAWPIQGLIKNFRPLIEERIDQY 419
             A  P+   I+ FRP  E R+ Q 
Sbjct: 572 HTACNPVLDTIERFRPAYERRMAQK 596


>gi|260220425|emb|CBA27950.1| NADH-quinone oxidoreductase subunit F 2 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 600

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/395 (36%), Positives = 219/395 (55%), Gaps = 21/395 (5%)

Query: 21  SDSMSRGHWDNVDKILEKG---RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
               ++G +  +   L +G    + +I  ++ SGLRG GGAGF  G KW  +    +  P
Sbjct: 223 DTYKAKGGY-ALAAALSQGTQDAESVIKAMEDSGLRGLGGAGFPAGRKWRIVRDQPA--P 279

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             + VN DE EPGT KDR  +  +PH  +EG ++A+  +G    +IY+R E+   R  L+
Sbjct: 280 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLVAAQVVGTTACYIYLRDEYHGCRAILE 339

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
             + +  A+              I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A
Sbjct: 340 TEIAKLQANPPCPLPV-------IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIA 392

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+G PT  +N E++  V  I+ +GASW+S FGR   +G + FS+SG V +P      
Sbjct: 393 QVGLFGRPTLEHNFETLYWVRDIVEKGASWFSSFGRNGRKGLRSFSVSGRVKFPGVKLAP 452

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             I+  EL++++CGG+     NL A +PGG+S    PA  +    +D+D L+  G  +G+
Sbjct: 453 AGISVAELVDEYCGGM-LDGHNLYAYLPGGASGGIFPAS-LSHVPLDFDTLQPHGGFIGS 510

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AAVIV+ +      A   +  FY HESCGQCTPCR GT     +ME      +   +   
Sbjct: 511 AAVIVLSQHDKARDAALNMMRFYAHESCGQCTPCRVGTAKAATLME------SPVWDHTT 564

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L +++  +   +IC LG AA  P++ + K F   +
Sbjct: 565 LEDLNVVMTDASICGLGQAAPNPVRCVQKYFAHEV 599


>gi|304394104|ref|ZP_07376027.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Ahrensia sp. R2A130]
 gi|303293544|gb|EFL87921.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Ahrensia sp. R2A130]
          Length = 570

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/403 (35%), Positives = 214/403 (53%), Gaps = 17/403 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
             K L+   + G +   +K+ + G   D +I  +  + LRG GGAGF TG KW F+    
Sbjct: 179 DYKDLAAYRAEGGYGQYEKLRDGGTNADAVIETLSDASLRGMGGAGFPTGKKWGFVRGYE 238

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
              P  + +NADE EPGT KDR  M   PH + EG +I +  + A   ++Y+R E+    
Sbjct: 239 G--PRLMTINADEGEPGTFKDRFYMERNPHAMFEGALIGAHCVEAERIYLYMRDEYPAAI 296

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           + +   + +  A+GL            I +  GAGAYICGEE+A+LES+EGK+G PR +P
Sbjct: 297 KVMAECIADIEAAGLAPPGF-------IEMRRGAGAYICGEESAMLESIEGKRGLPRHRP 349

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P+ A  GL+G PT  NNVE++  VP IL  G  W++  G+ ++ G + +S+SG V  P  
Sbjct: 350 PYIAEAGLFGRPTLNNNVETLYWVPEILANGVEWFTSQGKPDHPGMRSYSVSGRVANPGV 409

Query: 254 VEESMSITFDELIEKHCGGIRGGWD----NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
           V+     T +ELIE  CGG+    D       A +PGG+S   LPA +    +     L 
Sbjct: 410 VKAPAGSTVNELIEM-CGGMAAKEDGSVQTFKAYLPGGASGGILPADKGDVPLDFGGELA 468

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            +G+ +G+ AV+V   +  +  A   L  F+ HESCGQCTPCR GT  M +++     G 
Sbjct: 469 TLGAFVGSHAVVVFSDADSMKDATLNLIDFFTHESCGQCTPCRGGTEKMGKLLRASSNGG 528

Query: 370 AQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
               E   + ++   +   +IC LG AA  P+  L+ +FR  +
Sbjct: 529 DALDETA-IRDLEDVMRDASICGLGQAAPNPVNHLLTHFRKDL 570


>gi|255263458|ref|ZP_05342800.1| tungsten-containing formate dehydrogenase beta subunit
           [Thalassiobium sp. R2A62]
 gi|255105793|gb|EET48467.1| tungsten-containing formate dehydrogenase beta subunit
           [Thalassiobium sp. R2A62]
          Length = 561

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/398 (34%), Positives = 211/398 (53%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             ++    ++ G +  +  +   G  + + +++ ASGLRG GGAGF +G KW F+     
Sbjct: 182 DYETFDAYVAEGGYAALKDLRADGNWEDVQDKILASGLRGLGGAGFPSGKKWGFVRANAG 241

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E+     
Sbjct: 242 --PRYLAVNGDEGEPGTFKDRYYLERVPHQFLEGMLIAAWAVEAETCFIYMRDEYPAVLH 299

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L   +    A+G++           I +  GAGAYICGEE+A++ES+EGK+G PR +PP
Sbjct: 300 ILAEEIKALEAAGIVEEGY-------IDLRRGAGAYICGEESAMIESIEGKRGMPRHRPP 352

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           F A VG++G PT V+N+E++  V  I R G    S       +G + +S+SG +  P   
Sbjct: 353 FVAQVGVFGQPTLVHNIETLHWVSRICREGPEILSSVEHNGRKGLRSYSVSGRIAKPGVF 412

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  E+IE   G          A  PGG S   LPA  +    +D+D L+ +G+ 
Sbjct: 413 LLPAGSTITEIIEAAGGM--AEGHVFKAYQPGGPSSGLLPAS-INDVPLDFDTLQPLGTF 469

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A   +
Sbjct: 470 IGSAAVVVLSDQDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADAWD 523

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +LL ++S  +   +IC LG AA  PI+ ++ +F+  I
Sbjct: 524 QELLTDLSTAMVDASICGLGQAAPNPIKMVMTHFKDEI 561


>gi|304570556|ref|YP_266102.2| NAD-dependent formate dehydrogenase subunit beta [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 552

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/411 (31%), Positives = 206/411 (50%), Gaps = 8/411 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           Q++ F+  Y      + D +S      + + K +   +  I   +  S L GRGGAGF T
Sbjct: 139 QEKFFSKSYASTSFLMDDKLSNLDQFNEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 198

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F  K  S+   Y++ NADE + G   DR ++  +P  ++ G VI  + IG+    
Sbjct: 199 GMKWDFCRKAPSE-KKYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 257

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           +Y+RGE+ +  E++  A++    +GLLG N     +  D+ +  G GAYICGEETAL+ S
Sbjct: 258 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICIGQGAYICGEETALIAS 317

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++ +  ++PPFP   GLY  PT VNNVE++A    IL  GA  +S  G + + GTKL
Sbjct: 318 IEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGTKL 377

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
                  N P   E  M     +++    GG     + + A+  GG     +P  ++   
Sbjct: 378 VCFDSFFNNPGVYEVEMGTPMKKVLNDIGGG---FKEPIKALQIGGPLGGVIPITEIEKL 434

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+      G  LG A+++ + +   +++ I  L  F   ESCG+C P R G+     +
Sbjct: 435 NLDFQEFTAAGFMLGHASIVSIPKDFPMVEYIHHLFEFSAEESCGKCFPGRLGSYRGKEM 494

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++  K    K  + LL E+   ++   +CAL  A   PI  ++K F   +
Sbjct: 495 FDQ-AKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYFGDEM 544


>gi|291614071|ref|YP_003524228.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sideroxydans lithotrophicus ES-1]
 gi|291584183|gb|ADE11841.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sideroxydans lithotrophicus ES-1]
          Length = 603

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/390 (36%), Positives = 202/390 (51%), Gaps = 17/390 (4%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +   +  G   II  +KASGLRGRGGAGF TG+KW           HY+V NADE EP
Sbjct: 195 AALAAAISSG-AHIIEPIKASGLRGRGGAGFPTGLKWEACRDAP-GSEHYVVCNADEGEP 252

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR ++      + EG  I + A+GA   F+Y+RGE+    E L A +     S LL
Sbjct: 253 GTFKDRVLLNSHADLVFEGMTICALAVGARKGFLYLRGEYRYLLEPLHATLQRRRESNLL 312

Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           G +   + G+D DI +H GAGAYICGEE+AL+ESLEGK+G PR +PPFP   G    PT 
Sbjct: 313 GESILGRAGFDFDIDIHVGAGAYICGEESALIESLEGKRGVPRNRPPFPVTHGYLQQPTA 372

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           ++NVE+       L  GA  Y   G   + G+KL S+SG    P   E    ++  E+++
Sbjct: 373 IDNVETFCQAVLALYLGAERYRAIGTAKSTGSKLISVSGDCPRPGIYEYPFGVSVREVLQ 432

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                      N +AV   G S  C+   +     + ++ L   G      A +V D S 
Sbjct: 433 DCGAV------NTIAVQVSGPSGACVGESE-FDRKLGFEDLPTAG------AFMVFDDSR 479

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           D+ +       F+ HESCG CTPCR GT  +   M+++  G   + +++ +  + + ++ 
Sbjct: 480 DMFEVARNYVHFFAHESCGFCTPCRVGTSMLKSTMDKIANGHGTRYDLNEVENLDRVLQT 539

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417
            + C LG  A  P+   +K+FRP  E R+ 
Sbjct: 540 TSHCGLGRTACNPVLHTLKHFRPAYENRLK 569


>gi|121603736|ref|YP_981065.1| NADH dehydrogenase (quinone) [Polaromonas naphthalenivorans CJ2]
 gi|120592705|gb|ABM36144.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Polaromonas naphthalenivorans CJ2]
          Length = 600

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 215/395 (54%), Gaps = 21/395 (5%)

Query: 21  SDSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +   + G +  +   L   E+  + ++  ++ SGLRG GGAGF  G KW  +    +  P
Sbjct: 223 ATYRAHGGY-ALAASLVNGEEDAERVLAAMENSGLRGLGGAGFPAGRKWRIVRGQPA--P 279

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             + VN DE EPGT KDR  +  +PH  +EG ++A+  +G    +IY+R E+   R  LQ
Sbjct: 280 RLMAVNIDEGEPGTFKDRVYLERDPHRFLEGVLVAAQVVGIEACYIYLRDEYHDCRALLQ 339

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A + +  A               I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A
Sbjct: 340 AEIAKLQADPPCPLPL-------IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIA 392

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+G PT  +N E++  V  I+++G  W+S FGR   +G + FS+SG V  P      
Sbjct: 393 EVGLFGRPTLEHNFETLYWVRDIVQKGPQWFSSFGRNGRKGLRSFSVSGRVKLPGVKLAP 452

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  ELI+++CGG+      L A +PGG+S    PA       +D+D L+  G  +G+
Sbjct: 453 AGITLLELIDEYCGGMA-DGHTLYAYLPGGASGGIFPASH-ANVPLDFDTLQPHGGFIGS 510

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AAVIV+ +      A   +  F+  ESCGQCTPCR GT    R+M       A + +   
Sbjct: 511 AAVIVLGQHDKARDAALNMMRFFASESCGQCTPCRVGTAKAARLM------QAPRWDNAT 564

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L +++  +   +IC LG AA  P++ + K F   +
Sbjct: 565 LEDLNIVMTDASICGLGQAAPNPVRCVQKYFAHEV 599


>gi|218678678|ref|ZP_03526575.1| NADH dehydrogenase I subunit F [Rhizobium etli CIAT 894]
          Length = 269

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/269 (80%), Positives = 241/269 (89%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSAIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKH 269
           LF +SGHVN PCTVEE M ITF EL+++H
Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFRELVDRH 269


>gi|53803282|ref|YP_114984.1| dehydrogenase subunit [Methylococcus capsulatus str. Bath]
 gi|53757043|gb|AAU91334.1| putative dehydrogenase subunit [Methylococcus capsulatus str. Bath]
          Length = 561

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 143/397 (36%), Positives = 212/397 (53%), Gaps = 19/397 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
           +S +   + G +          +  + +I  +++SGLRG GGAGF  G KW  +    + 
Sbjct: 181 RSYAAYQADGGYQLYQDCRSGHRSPEEVIALLESSGLRGLGGAGFPVGRKWRIVRAQPA- 239

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
            P  + VN DE EPGT KDR  +  +PH  +EG +IA++A+G    +IY+R E+   R+ 
Sbjct: 240 -PRLMAVNIDEGEPGTFKDRHYLERDPHRFLEGMLIAAWAVGIESIYIYLRDEYAGCRQI 298

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L   + +   +         G   +I +  GAGAYICGEE+A++ES+EGK+G PRL+PPF
Sbjct: 299 LLRELQQLREAVP-------GPLPEIQLRRGAGAYICGEESAMIESIEGKRGMPRLRPPF 351

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
            A VGL+G PT  +N+ES+  V  I+ RG  W++G GR + +G + FS+SG V  P    
Sbjct: 352 VAQVGLFGRPTLEHNMESLYWVRDIVERGPDWFTGHGRRDRKGLRSFSVSGRVRKPGVHL 411

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
               I+  ELI ++CGG+  G +      PGG+S   LPA  +    +D+D L   G  +
Sbjct: 412 APAGISVRELIAEYCGGMAEGHE-FYGYFPGGASGGILPAS-LGDLPLDFDTLTPYGCFI 469

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+AAV+V                F+  ESCGQCTPCR GT     +M         + + 
Sbjct: 470 GSAAVVVFSTQDKARDLALNAMRFFAEESCGQCTPCRVGTAKAAALMA------QPQWDR 523

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            LL E++  +   +IC LG AAA P++  +K F    
Sbjct: 524 PLLEELAGAMSDASICGLGQAAANPLRCAMKYFPEEF 560


>gi|330823665|ref|YP_004386968.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans K601]
 gi|329309037|gb|AEB83452.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans K601]
          Length = 633

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 149/395 (37%), Positives = 226/395 (57%), Gaps = 19/395 (4%)

Query: 20  LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L+   +RG +     + +    RD ++  ++ SGLRG GGAGF  G KW  + +  +  P
Sbjct: 225 LAAYRARGGYRLAADVAQGRVPRDAVLAAMEDSGLRGLGGAGFPAGRKWRIVREQPA--P 282

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             + VN DE EPGT KDR  +  +PH  +EG ++A+  +G    ++Y+R E+   R  LQ
Sbjct: 283 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLVAALVVGTEACYVYLRDEYHGCRAILQ 342

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+ E  A       +       I++  GAGAYICGEE+A++ES+EG++G+PR++PP+ A
Sbjct: 343 QALAELRADPPCALPA-------IVLRRGAGAYICGEESAMIESIEGRRGEPRMRPPYIA 395

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+G PT  +N E++  V  I++ G  W++GFGR   RG + FS+SG V  P      
Sbjct: 396 QVGLFGRPTLEHNFETLYWVRDIVQHGPQWFAGFGRHGRRGLRSFSVSGRVKEPGVKLAP 455

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  EL++++CGG+  G + L A +PGG+S   LPA ++    +D+D L+  G  +G+
Sbjct: 456 AGITLRELVDEYCGGMAEGHE-LYAYLPGGASGGILPA-RLADVPLDFDTLQPYGCFIGS 513

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AAVIV+ R+     A   +  F+ HESCGQCTPCR GT    R+M       A   + D 
Sbjct: 514 AAVIVLGRNDRARDAALNVMRFFAHESCGQCTPCRVGTDKAARLM------QAPVWDGDT 567

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L +++  +   +IC LG AA  PI+ + K F   +
Sbjct: 568 LDDLALVMADASICGLGQAAPNPIRCMHKYFAHEV 602


>gi|91762193|ref|ZP_01264158.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91717995|gb|EAS84645.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 552

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 130/411 (31%), Positives = 206/411 (50%), Gaps = 8/411 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           Q++ F+  Y      + D +S      + + K +   +  I   +  S L GRGGAGF T
Sbjct: 139 QEKFFSKSYASTSFLMDDKLSNLDQFKEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 198

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F  K  S+   Y++ NADE + G   DR ++  +P  ++ G VI  + IG+    
Sbjct: 199 GMKWDFCRKAPSE-KKYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 257

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           +Y+RGE+ +  E++  A++    +GLLG N     +  D+ +  G GAYICGEETAL+ S
Sbjct: 258 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICIGQGAYICGEETALIAS 317

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++ +  ++PPFP   GLY  PT VNNVE++A    IL  GA  +S  G + + GTKL
Sbjct: 318 IEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGTKL 377

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
                  N P   E  M     +++    GG     + + A+  GG     +P  ++   
Sbjct: 378 VCFDSFFNNPGVYEVEMGTPMKKVLNDIGGG---FKEPIKALQIGGPLGGVIPITEIEKL 434

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+      G  LG A+++ + +   +I+ I  L  F   ESCG+C P R G+     +
Sbjct: 435 NLDFQEFTAAGFMLGHASIVSIPKDFPMIEYIHHLFEFSAEESCGKCFPGRLGSYRGKEM 494

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++  K    K  + LL E+   ++   +CAL  A   PI  ++K F   +
Sbjct: 495 FDQ-AKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYFGDEM 544


>gi|319764060|ref|YP_004127997.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Alicycliphilus denitrificans BC]
 gi|317118621|gb|ADV01110.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alicycliphilus denitrificans BC]
          Length = 633

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 149/395 (37%), Positives = 226/395 (57%), Gaps = 19/395 (4%)

Query: 20  LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L+   +RG +     + +    RD ++  ++ SGLRG GGAGF  G KW  + +  +  P
Sbjct: 225 LAAYRARGGYRLAADVAQGRVPRDTVLAAMEDSGLRGLGGAGFPAGRKWRIVREQPA--P 282

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             + VN DE EPGT KDR  +  +PH  +EG ++A+  +G    ++Y+R E+   R  LQ
Sbjct: 283 RLMAVNIDEGEPGTFKDRTYLERDPHRFLEGLLVAALVVGTEACYVYLRDEYHGCRAILQ 342

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+ E  A       +       I++  GAGAYICGEE+A++ES+EG++G+PR++PP+ A
Sbjct: 343 QALAELRADPPCALPA-------IVLRRGAGAYICGEESAMIESIEGRRGEPRMRPPYIA 395

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+G PT  +N E++  V  I++ G  W++GFGR   RG + FS+SG V  P      
Sbjct: 396 QVGLFGRPTLEHNFETLYWVRDIVQHGPQWFAGFGRHGRRGLRSFSVSGRVKEPGVKLAP 455

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  EL++++CGG+  G + L A +PGG+S   LPA ++    +D+D L+  G  +G+
Sbjct: 456 AGITLRELVDEYCGGMAEGHE-LYAYLPGGASGGILPA-RLADVPLDFDTLQPHGCFIGS 513

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AAVIV+ R+     A   +  F+ HESCGQCTPCR GT    R+M       A   + D 
Sbjct: 514 AAVIVLGRNDRARDAALNVMRFFAHESCGQCTPCRVGTDKAARLM------QAPVWDGDT 567

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L +++  +   +IC LG AA  PI+ + K F   +
Sbjct: 568 LDDLALVMADASICGLGQAAPNPIRCMHKYFAHEV 602


>gi|83643019|ref|YP_431454.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Hahella chejuensis KCTC 2396]
 gi|83631062|gb|ABC27029.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Hahella chejuensis KCTC 2396]
          Length = 611

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 131/391 (33%), Positives = 209/391 (53%), Gaps = 16/391 (4%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +   L+     +I +V+ S LRGRGGAGF TG KW       ++   Y++ NADE EP
Sbjct: 198 QGLQAALQLSPLEVIAQVEESLLRGRGGAGFPTGRKWRLAANTPAE-ERYVICNADEGEP 256

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR ++  +P  L  G  IA++A+GA    +Y+RGE+   R  L+A +       LL
Sbjct: 257 GTFKDRVLLTEKPDLLFAGMTIAAYAVGARHGILYLRGEYRYLRAYLEATLQRRREQNLL 316

Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           G+    +  +  DI +  GAGAYICGEE++L+ S EGK+G+P+ +PPFP   G  G PT 
Sbjct: 317 GAGILGRDDFSFDIRIQMGAGAYICGEESSLISSCEGKRGEPKNRPPFPVQSGYLGHPTV 376

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+++ VP I+ +GA W+ G G   + GTKL S+SG    P   E +  +T  E++ 
Sbjct: 377 VNNVETLSCVPRIMEQGAPWFRGMGTTGSSGTKLLSVSGDCVRPGIYEIAFGVTLAEILT 436

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
           +          +  A++ GG+S   +   +     + ++ L   G      A++  + S 
Sbjct: 437 QAGA------QDAAAIVVGGASGQIVGRTEFH-RRLCFEDLASAG------AIVCFNSSR 483

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           +I++A      F+  ESCG CTPCR G  ++ + +E+++ G  +  ++D L  +S  I  
Sbjct: 484 NILEAAAYYMDFFIEESCGYCTPCRVGNVFLKKGLEKIMHGEGEPEDLDYLRSLSDTIIA 543

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            + C LG  +  PI   ++ F  +    + +
Sbjct: 544 TSRCGLGHTSPNPILSTMEYFPLVYSAMVKE 574


>gi|297190828|ref|ZP_06908226.1| LOW QUALITY PROTEIN: respiratory chain oxidoreductase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297150631|gb|EFH30698.1| LOW QUALITY PROTEIN: respiratory chain oxidoreductase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 362

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 151/375 (40%), Positives = 205/375 (54%), Gaps = 21/375 (5%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
              G   +I EV  +GL GRGGA F TG KW       +D PHYLV NADESEPGT KDR
Sbjct: 1   FALGPAGVIREVTDAGLLGRGGAAFPTGRKWQATA-SQADHPHYLVCNADESEPGTFKDR 59

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SK 154
            +M  +P  LIE   IA +AIGAH  F+Y+RGE+ R    L+ A+    A GLLG +   
Sbjct: 60  VLMEGDPFALIEAMTIAGYAIGAHQGFLYLRGEYPRALGLLENAIASARARGLLGEDVLG 119

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
            GY  DI +  GAGAYICGEETA+  S+EG +G+PR KPPFP   GL+G PT VNNVE++
Sbjct: 120 QGYAFDIEIRRGAGAYICGEETAIFNSIEGYRGEPRTKPPFPVEKGLFGKPTAVNNVETL 179

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
             V  IL                 TKLF +SG+V  P   E    +T  ELIE       
Sbjct: 180 VNVLPILN-----------GRTEETKLFCLSGNVARPGIYELPFGVTLRELIELAG---- 224

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D + AV+ GG++   +   ++    + ++G +  G+ LG+  V+V+D + ++ + + 
Sbjct: 225 -PPDRMRAVLLGGAAGSFVRPDEL-DIPLTFEGTRAAGTTLGSGVVLVLDDTVELPRVLL 282

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERL--VKGIAQKREIDLLYEVSKNIEGRTICA 392
           R++ F++ ESCGQC PCR GT      + R+    G     +I LL EV   +   +IC 
Sbjct: 283 RIAEFFRDESCGQCVPCRVGTVRQEEALHRIKDRTGADAAGDIALLREVGAAMRDASICG 342

Query: 393 LGDAAAWPIQGLIKN 407
           LG  A   ++  I  
Sbjct: 343 LGQTAWNAVESAIDR 357


>gi|71062496|gb|AAZ21499.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 509

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/411 (31%), Positives = 206/411 (50%), Gaps = 8/411 (1%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           Q++ F+  Y      + D +S      + + K +   +  I   +  S L GRGGAGF T
Sbjct: 96  QEKFFSKSYASTSFLMDDKLSNLDQFNEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPT 155

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
           GMKW F  K  S+   Y++ NADE + G   DR ++  +P  ++ G VI  + IG+    
Sbjct: 156 GMKWDFCRKAPSE-KKYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGV 214

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           +Y+RGE+ +  E++  A++    +GLLG N     +  D+ +  G GAYICGEETAL+ S
Sbjct: 215 LYIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICIGQGAYICGEETALIAS 274

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EG++ +  ++PPFP   GLY  PT VNNVE++A    IL  GA  +S  G + + GTKL
Sbjct: 275 IEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGADKFSAIGNKKSAGTKL 334

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
                  N P   E  M     +++    GG     + + A+  GG     +P  ++   
Sbjct: 335 VCFDSFFNNPGVYEVEMGTPMKKVLNDIGGG---FKEPIKALQIGGPLGGVIPITEIEKL 391

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D+      G  LG A+++ + +   +++ I  L  F   ESCG+C P R G+     +
Sbjct: 392 NLDFQEFTAAGFMLGHASIVSIPKDFPMVEYIHHLFEFSAEESCGKCFPGRLGSYRGKEM 451

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++  K    K  + LL E+   ++   +CAL  A   PI  ++K F   +
Sbjct: 452 FDQ-AKNKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYFGDEM 501


>gi|326562844|gb|EGE13132.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis
           103P14B1]
          Length = 359

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 139/353 (39%), Positives = 203/353 (57%), Gaps = 9/353 (2%)

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   P  LIEG +I+++AIGA   ++++RGE++   +
Sbjct: 1   GGVRYLICNADEMEPGTFKDRLLMERLPFQLIEGMLISAYAIGASVGYVFIRGEYVLAAK 60

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            LQ A++EC A+ LLG       ++  + VH GAG YICGEETAL+  LEG++  PR KP
Sbjct: 61  RLQNAINECVANHLLGDGILGTEFNFTLHVHTGAGRYICGEETALINCLEGRRANPRTKP 120

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF----GRENNRGTKLFSISGHVN 249
           PFP   G +G PT VNNVE++  +P IL  G  WY       G+    GTK+  +SG V 
Sbjct: 121 PFPQVSGAWGRPTVVNNVETLNNMPAILLNGVDWYLNLPKAKGKSTTPGTKIMGVSGRVK 180

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA-GQMRGAIMDYDGL 308
                E     T  ELIE   G       +L A +PGG+S   L A  +    +MD+D +
Sbjct: 181 DAGLWELPFGHTARELIELAGGM--QEGLSLKAWLPGGASTDFLTASDEHLDLVMDFDPI 238

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
            + GS LGT  ++V+D S D++     L  F++ ESCG CTPCR+G  W +++++ +  G
Sbjct: 239 MKAGSRLGTCLMMVVDESQDMVSLSKNLQQFFQRESCGWCTPCRDGLPWGVKILDAMDNG 298

Query: 369 IAQKREIDLLYEVSKNIE-GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            AQ  +ID L E+++++  G+T CA    A  P+   +K FR   E++++   
Sbjct: 299 QAQADDIDKLSELTRDLWLGKTFCAHAPGAMEPLMSALKYFRHEFEQKVNNSK 351


>gi|241765112|ref|ZP_04763102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax delafieldii 2AN]
 gi|241365263|gb|EER60098.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax delafieldii 2AN]
          Length = 657

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 148/433 (34%), Positives = 220/433 (50%), Gaps = 55/433 (12%)

Query: 19  SLSDSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV--- 72
            L+   + G +      L   E   + ++  ++ SGLRG GGAGF  G KW  + +    
Sbjct: 214 DLATYRAHGGYQ-TAAALVNGEMDAEAVLAAMEDSGLRGLGGAGFPAGRKWRIVREQAAL 272

Query: 73  ---------------------------------CSDRPHYLVVNADESEPGTCKDRDIMR 99
                                                   + VN DE EPGT KDR  + 
Sbjct: 273 AARRAAPSEATAPVPGEGGGHLPPGGSGPREAEERGGTAVMAVNIDEGEPGTFKDRTYLE 332

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            +PH  +EG +IA+  +G    +IY+R E+   R  LQ A+D+  A              
Sbjct: 333 RDPHRFLEGVLIAAQVVGTEAVYIYLRDEYHGCRALLQKALDDLRAEPPCPL-------P 385

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT  +N E++  V  
Sbjct: 386 HIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRD 445

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I+ RG  W++ FGR   +G + FS+SG V +P        IT  ELI+++CGG+      
Sbjct: 446 IVERGPQWFASFGRNGRKGLRSFSVSGRVKHPGVKLAPAGITVQELIDEYCGGM-LDGHQ 504

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           L A +PGG+S   LPA  +    +D+D L+  G  +G+AAVIV+ +      A   +  F
Sbjct: 505 LYAYLPGGASGGILPA-HLNNIPLDFDTLQPYGCFIGSAAVIVLSQHDRARDAALNVMRF 563

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           ++HESCGQCTPCR GT     +ME        + + DLL ++++ +   +IC LG AA  
Sbjct: 564 FEHESCGQCTPCRVGTAKAAALMEA------PQWDADLLDDLAQVMADASICGLGQAAPN 617

Query: 400 PIQGLIKNFRPLI 412
           PI+ + K F   +
Sbjct: 618 PIRCIHKYFPHEV 630


>gi|329902903|ref|ZP_08273301.1| tungsten-containing formate dehydrogenase beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548567|gb|EGF33228.1| tungsten-containing formate dehydrogenase beta subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 573

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 221/396 (55%), Gaps = 18/396 (4%)

Query: 19  SLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
            L+   + G +  + + +   R  + ++  ++ SGLRG GGAGF  G KW  +       
Sbjct: 188 DLAAYRTYGGYGLLAECVSGTRALESVLKTMEDSGLRGLGGAGFPAGRKWRIVGAEAG-- 245

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P  + VN DE EPGT KDR  +  +PH  +EG +IA++A+G    +IY+R E+   R  L
Sbjct: 246 PRLMAVNIDEGEPGTFKDRTYLERDPHRFLEGMLIAAWAVGIDDIYIYLRDEYHACRALL 305

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
              + +  A      +  +     I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ 
Sbjct: 306 DTELAQLRA------DPPMDNMPAIHLRRGAGAYICGEESAMIESIEGKRGLPRLRPPYV 359

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT  +N E++  V  IL  GA W++  GR   +G + FS+SG +  P     
Sbjct: 360 AQVGLFGRPTLEHNFETLYWVRRILEEGAGWFTSHGRHGRKGLRSFSVSGRIRLPGVHLA 419

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              IT  ELI+++CGG+      L A +PGG+S   LPA  M    +D+D L+E G  +G
Sbjct: 420 PAGITIQELIDEYCGGM-QEGHQLYAYLPGGASGGILPAS-MNAIPLDFDTLQEHGCFIG 477

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AA++V+ +    + A   L  F+K ESCGQCTPCR GT   + ++E        + ++ 
Sbjct: 478 SAAIVVLSQHDTAVNAARNLMRFFKEESCGQCTPCRVGTAKALALIE------QPQWDVA 531

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL ++S  +   +IC LG AA  PI  +++ F   +
Sbjct: 532 LLADLSTVMRDASICGLGQAAPNPIDCVVRYFPHEL 567


>gi|254491470|ref|ZP_05104649.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Methylophaga thiooxidans DMS010]
 gi|224462948|gb|EEF79218.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Methylophaga thiooxydans DMS010]
          Length = 565

 Score =  367 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 145/400 (36%), Positives = 217/400 (54%), Gaps = 18/400 (4%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
           +        + +G ++     +E   +   +++ +  SGLRG GGAGF  G KW  +   
Sbjct: 181 IDPILFESYIEQGGYNTYRLCMEGQFEVEKVLDVMDDSGLRGLGGAGFPVGRKWRIVRDQ 240

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            +  P  + VN DE EPGT KD+  +  +PH  +EG +IA++A+G    +IY+R E+   
Sbjct: 241 PA--PKLMAVNIDEGEPGTFKDKYYLDRDPHCFLEGTLIAAWAVGIEEVYIYLRDEYAAI 298

Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
           RE L+  + +  A      N  +     + +  GAGAYICGEE+A++ES+EGK+G PRL+
Sbjct: 299 REMLEVEMAKLQA------NPPVANMPKLHLRRGAGAYICGEESAMIESIEGKRGMPRLR 352

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPF A VGL+G PT  +N+ES+  V  IL +GAS  +  GR    G + FS+SG VN P 
Sbjct: 353 PPFVAQVGLFGRPTLEHNMESLYWVRDILEKGASCMTDHGRHGRTGLRSFSVSGRVNKPG 412

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
                  IT  ELI+++C G+           PGG+S   LPA  M    +D+D L + G
Sbjct: 413 VHLAPAGITMRELIDEYCDGM-LDGHEFYGYFPGGASGGILPAS-MGDIPLDFDTLNDHG 470

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
             +G+AAV+V        +       F++ ESCGQCTPCR GT   + +M        ++
Sbjct: 471 CFIGSAAVVVFSDKDQARELAVNAMKFFEDESCGQCTPCRVGTAKAVNLM------QEKQ 524

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            + DLL E+S+ +   +IC LG AA  P++ +IK F   +
Sbjct: 525 WDQDLLEELSQVMVDASICGLGQAAPNPLRCVIKYFPEEL 564


>gi|295699179|ref|YP_003607072.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002]
 gi|295438392|gb|ADG17561.1| NADH dehydrogenase (quinone) [Burkholderia sp. CCGE1002]
          Length = 414

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 211/399 (52%), Gaps = 5/399 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           G  L    +RG  + + K L+   + II E+  + LRG GGAGF    KW+ +     D 
Sbjct: 16  GADLDAWFARGGGEGLAKALD-DPEAIIAELAQADLRGMGGAGFPAHRKWAPVA-AAPDG 73

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N +E EPGT KDR ++ H PH +IEG +IA+ A  A+   +YV         + 
Sbjct: 74  DKYVVCNGNEDEPGTFKDRFLLEHTPHQVIEGALIAAVATRANHVVLYVNPHQTSSLAAT 133

Query: 137 QAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + AV++        +  + +G  + + V   +G YI GEETA++ S+EG    PR KPPF
Sbjct: 134 REAVEQWSGHPQFAAVERWIGAPLSLGVVPSSGLYIGGEETAVIASVEGGFPFPRRKPPF 193

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G++G PT VNNVE++A VP ILR GA WY   G  N  GTKL+S+SG V  P   E
Sbjct: 194 PAEQGVHGAPTIVNNVETLAHVPGILRHGAQWYRELGVGNAAGTKLYSLSGDVLRPGLYE 253

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  + + L+ +H GG+        AV  GG S   L    +    +D+D +++  S L
Sbjct: 254 LPMGTSLETLVFQHGGGM-LQGKEFKAVFTGGPSNTLLTKRDL-DVALDFDSVRQRRSRL 311

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+IV+   T I++ +     F+   SCGQC PC+ GT  MMR++ RL  G   + ++
Sbjct: 312 GTGAMIVVSEGTSIVRKVADYVNFFAQGSCGQCPPCKGGTFQMMRLLNRLDTGRGVRADL 371

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           D L  + + + G   C L D A   ++  I  FR   E 
Sbjct: 372 DALENLCRVLPGSGRCGLIDGAVTVVESSIDQFRAEYEA 410


>gi|319794267|ref|YP_004155907.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Variovorax paradoxus EPS]
 gi|315596730|gb|ADU37796.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Variovorax paradoxus EPS]
          Length = 595

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 145/394 (36%), Positives = 218/394 (55%), Gaps = 21/394 (5%)

Query: 22  DSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
              +RG +  +   +  G    D ++  +  SGLRG GGAGF  G KW  + +  +  P 
Sbjct: 219 AYRARGGYQ-LAAAVASGARPVDDVLKTMTDSGLRGLGGAGFPAGRKWGIVRQQLA--PR 275

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KDR  +  +PH  ++G +IA+  +G    ++Y+R E+   R  L+ 
Sbjct: 276 LMAVNIDEGEPGTFKDRTYLERDPHRFLDGLLIAATVVGIDACYVYLRDEYHGCRAILER 335

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            +    A+              I +  GAGAYICGEE+A++ES+EGK+G+PR++PP+ A 
Sbjct: 336 ELALLQANPPCAL-------PRIELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQ 388

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           +GL+G PT  +N E++  V  I+ RGA+W+S FGR    G + FS+SG V  P       
Sbjct: 389 IGLFGRPTLEHNFETLYWVRDIVERGAAWFSDFGRNGRHGLRSFSVSGRVREPGVKLAPA 448

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT  EL+++ CGG+  G D L A +PGG+S   LPA  M    +D+D L+  G  +G+A
Sbjct: 449 GITLRELVDEFCGGMLPGHD-LYAYLPGGASGGILPAS-MSDIPLDFDTLQPHGCFIGSA 506

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AVIV+ +      A   +  F++HESCGQCTPCR GTG   R+M           +   L
Sbjct: 507 AVIVLSQKDRARDAALNMMHFFEHESCGQCTPCRVGTGKAARLMA------EPHWDHATL 560

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++++ +   +IC LG AA  P++ + K F   +
Sbjct: 561 EDLNQVMVDASICGLGQAAPNPVRCVQKYFPHEV 594


>gi|311694464|gb|ADP97337.1| formate dehydrogenase, beta subunit [marine bacterium HP15]
          Length = 571

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 157/400 (39%), Positives = 230/400 (57%), Gaps = 19/400 (4%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
           +  + L+D  S G +  +    E     D +  E++ +GLRG GGAGF T  KW  +   
Sbjct: 180 IHWQKLADYRSAGGYQLLKDCREGRVTVDSLAEELEHAGLRGLGGAGFPTYRKWQAVRAE 239

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
               P Y V+NADE EPGT KDR  +  EPH  +EG +++++A+ A   +IY+R E+   
Sbjct: 240 PG--PRYAVINADEGEPGTFKDRYYLEREPHGFLEGALVSAWAVEAQALYIYLRDEYPGL 297

Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
              L+ A+ E   +G++           +I+  GAGAYICGEE+AL+ESLEGK G+PR +
Sbjct: 298 LVVLKDAIAELETAGIVEPGF-------VILRRGAGAYICGEESALIESLEGKPGKPRHR 350

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPF A  GL+G PT VNNVE++  +P I  +GA WY+  GR   +G + FS+SG V  P 
Sbjct: 351 PPFVAQKGLFGQPTLVNNVETVYWIPRIHAQGAEWYASQGRHGRKGLRSFSVSGRVARPG 410

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
                  +T +ELIE++CGG+      L+A +PGG+S   LPA +     +D+D L+E G
Sbjct: 411 VHVAPAGVTLNELIEEYCGGMA-EGHRLVAYLPGGASGGILPASK-ADIPLDFDTLQEHG 468

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
             +G+AAVIV+    D+  A   L  F+  ESCGQCTPCR GT  M+ ++ER        
Sbjct: 469 CFIGSAAVIVLSDQDDLQAAAANLLGFFADESCGQCTPCRVGTEKMLTLLER------DT 522

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +   L +++  +   +IC LG AA  P+  L+++FR  +
Sbjct: 523 WDEQTLQQLAAVMADASICGLGQAAPNPVLSLLRDFRSEL 562


>gi|126733158|ref|ZP_01748905.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2]
 gi|126716024|gb|EBA12888.1| formate dehydrogenase, beta subunit [Roseobacter sp. CCS2]
          Length = 563

 Score =  365 bits (938), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 139/404 (34%), Positives = 213/404 (52%), Gaps = 19/404 (4%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSF 68
           T+ +    +  S  ++ G +  +  + E G  + + ++V ASGLRG GGAGF +G KW F
Sbjct: 176 THAHVPDYEGYSAYVANGGYAQLQALREGGDWEDVQDKVLASGLRGLGGAGFPSGKKWGF 235

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           +       P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E
Sbjct: 236 VRGNA--CPRYLAVNGDEGEPGTFKDRYYLERMPHLFLEGMLIAAWAVEADTCFIYMRDE 293

Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +    + L   +     +G++           I +  GAGAYICGEE+A++ES+EGK+G 
Sbjct: 294 YPAVLDILALEIKALEGAGIVAEGY-------IDLRRGAGAYICGEESAMIESIEGKRGL 346

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR +PPF A VG++  PT V+NVE++  V  I R G    +   +    G + +S+SG V
Sbjct: 347 PRHRPPFVAQVGIFDRPTLVHNVETLLWVARICREGPEVLNSTEKNGRVGLRSYSVSGRV 406

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P         T  ++IE   G          A  PGG S   LPA  +    +D+D L
Sbjct: 407 AQPGVYLLPAGSTITDIIEAAGGM--AAGHVFKAYQPGGPSSGLLPA-TINDVPLDFDTL 463

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
           + +G+ +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M      
Sbjct: 464 QPLGTFIGSAAVVVLSDQDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------ 517

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            A   +  LL ++   +   +IC LG AA  PI+ ++++F+  +
Sbjct: 518 QADAWDQPLLEDLCTAMADASICGLGQAAPNPIKLVMQHFKDEV 561


>gi|238020589|ref|ZP_04601015.1| hypothetical protein GCWU000324_00475 [Kingella oralis ATCC 51147]
 gi|237867569|gb|EEP68575.1| hypothetical protein GCWU000324_00475 [Kingella oralis ATCC 51147]
          Length = 417

 Score =  365 bits (937), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 142/400 (35%), Positives = 205/400 (51%), Gaps = 5/400 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           L G  L+  ++ G  + +   L    D I   ++ +GL G GGAGF T  KW+ M +  S
Sbjct: 15  LVGSDLNAWLAVGGGEGLLNALT-APDNIAKVLEDAGLCGMGGAGFPTHRKWTAMAESPS 73

Query: 75  DR-PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           +    Y+V NA+E EPGT KDR ++ H PH +IEG +IA+    A+   +Y+        
Sbjct: 74  ETGDRYVVCNANEDEPGTFKDRFLLEHAPHQVIEGALIAAVYTRANNIILYINPHLTESL 133

Query: 134 ESLQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
            + + A+ +     L     + LG  + I V   +G YI GEETA++  L G    P+ K
Sbjct: 134 AATREAIAQWQKHALFQRIEAHLGKPLTIKVTESSGRYIGGEETAVISWLNGGFPFPQYK 193

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPFP   G+ G PT +NN E++A V  ILR GA WY G GR N  GTKL+S+SG V    
Sbjct: 194 PPFPFQKGVAGEPTLLNNTETLAHVSHILRNGAEWYRGLGRANGVGTKLYSLSGDVLNEG 253

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
             E  M IT  ELI+ + GG+        AV  GG S   L A  +    +D+   KE  
Sbjct: 254 LFELPMGITLRELIDNYGGGM-LEGRTFKAVFMGGPSNNILTAKDL-DVPLDFVSAKERN 311

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           SGLGT A+IV+   T I++       F+ + SCGQC PC+ GT  + R++ER+  G + +
Sbjct: 312 SGLGTGAMIVVSEGTSIVRKTADYIQFFANNSCGQCPPCKGGTYQLARLVERVDNGTSTE 371

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            ++  L  +   + G   C L   AA  +   ++ F    
Sbjct: 372 DDLHALQNLVNIMPGAGRCGLITGAATVVASSMRTFPIEY 411


>gi|254500702|ref|ZP_05112853.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
 gi|222436773|gb|EEE43452.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
          Length = 558

 Score =  365 bits (937), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 140/395 (35%), Positives = 221/395 (55%), Gaps = 19/395 (4%)

Query: 21  SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
               + G +  ++++   E     + + V A+GLRG GGAGF TG KW  +  +    P 
Sbjct: 180 EAYRASGGYKVLERVRSGELTAVSVADLVLAAGLRGLGGAGFPTGTKWKIVHDLPG--PK 237

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           +L +N DE EPGT KDR  +  +PH L+EG ++A+ AI A   ++Y+R E+    E L  
Sbjct: 238 FLTINGDEGEPGTFKDRYHLESDPHRLLEGALVAAHAISADRIYLYMRDEYPAVLEILNT 297

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            ++   ++G++         +DI +  GAGAYICGEE+A++ES+EGK+G PR +PPF A 
Sbjct: 298 EIEALRSAGII-------TTIDIEIRRGAGAYICGEESAMIESIEGKRGLPRHRPPFIAQ 350

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+G PT  +N+E++  +  I+ +G  W++  GR  ++G + FS+SG V  P       
Sbjct: 351 VGLFGRPTLNHNIETLFWIRDIVEKGPEWFAEQGRRGHKGFRSFSVSGRVREPGVKLAPA 410

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            IT +EL+E++CGG+          +PGG+S   LPA  +    +D+  L + G  +G+ 
Sbjct: 411 GITMNELLEEYCGGME-DGHIFKGYLPGGASGGILPAS-LADEPLDFGTLDKHGCFIGSH 468

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           A++V     D+  A   L  F+KHESCGQCTPCR GT  M +++           + D +
Sbjct: 469 AIVVFSDQDDMRDAALNLMRFFKHESCGQCTPCRSGTEKMEKLLAD------GDWDTDKI 522

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
            ++   +   +IC LG AA+ P+  ++K F    E
Sbjct: 523 ADLDAVMRSASICGLGQAASNPVASVLKFFSEEFE 557


>gi|163794186|ref|ZP_02188158.1| Tungsten-containing formate dehydrogenase beta subunit [alpha
           proteobacterium BAL199]
 gi|159180354|gb|EDP64875.1| Tungsten-containing formate dehydrogenase beta subunit [alpha
           proteobacterium BAL199]
          Length = 582

 Score =  365 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 142/401 (35%), Positives = 218/401 (54%), Gaps = 19/401 (4%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
            L    L+   + G +  + + L      + +I+ ++ +GLRG GGAGF T  KWS + +
Sbjct: 198 ALNPVRLAAYRADGGYALLQRCLDGAVTPEAVIDALQTAGLRGLGGAGFPTARKWSLVRQ 257

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
                P  + VNADE EPGT KDR  +  + H ++EG +IA++ +GA   +IY+R E+  
Sbjct: 258 APG--PRLMAVNADEGEPGTFKDRWYLERDVHRMLEGMLIAAWVVGADAVYIYLRDEYPE 315

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
               L   ++   A+GL           +I +  GAGAYICGEE+A++ES+EGK+G PR 
Sbjct: 316 IHAILIEEIEALTAAGL-------ASHTEIHLRRGAGAYICGEESAMIESIEGKRGLPRH 368

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           +PP+ A  GL+  PT VNNVE++  V  I+ +G  W++  G+  + G + +S+SG V  P
Sbjct: 369 RPPYVAQRGLFDRPTLVNNVETLWWVRDIVEKGGEWFASLGKPGHPGLRSYSVSGRVRNP 428

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
                +  +T  ELIE+HCGG+          +PGG+S   LPA  M    +D+  L++ 
Sbjct: 429 GVKVVAAGVTARELIEEHCGGM-LDGHAFKGYLPGGASGGILPAS-MADIPLDFGQLEKH 486

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G  +G+ AV+++    D+      L  F++ ESCGQCTPCR GT     +M     G   
Sbjct: 487 GCFVGSHAVVILSDRDDMKDVALNLMRFFEDESCGQCTPCRAGTEKAATLM---ASGHW- 542

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +  LL E++  +   +IC LG AA  PI  ++K F   +
Sbjct: 543 --DQPLLEELTGVMRDASICGLGQAAGNPILSVMKFFPEDL 581


>gi|84515410|ref|ZP_01002772.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis
           SKA53]
 gi|84510693|gb|EAQ07148.1| formate dehydrogenase, beta subunit [Loktanella vestfoldensis
           SKA53]
          Length = 561

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 138/398 (34%), Positives = 210/398 (52%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             ++L+   + G +  ++ +  +G    + ++V ASGLRG GGAGF +G KW F+     
Sbjct: 182 DYQTLASYCADGGYAVLEHLRAQGDWQAVQDKVLASGLRGLGGAGFPSGRKWGFVRAHAG 241

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E+     
Sbjct: 242 --PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAQTCFIYMRDEYPAVLA 299

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+  +     +G++           I +  GAGAYICGEE+A++ES+EGK+G PR +PP
Sbjct: 300 ILRREIAALEQAGIVAPGF-------IDLRRGAGAYICGEESAMIESIEGKRGIPRHRPP 352

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           F A VGL+G PT V+NVE++  V  + R G    S   +   +G + +S+SG V  P   
Sbjct: 353 FVAEVGLFGRPTLVHNVETLLWVARVCREGPDILSSVEKNGRKGLRSYSVSGRVAQPGMY 412

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  ++I               A  PGG S   LPA  M    +D+D L+   + 
Sbjct: 413 VLPAGSTITDIIAAAG--GMAAGHVFKAYQPGGPSSGLLPA-TMADVPLDFDTLQPHDTF 469

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+ +      A   +  F++ ESCGQCTPCR G    +++M       A + +
Sbjct: 470 IGSAAVVVLSQQDRARDAALNMLRFFEDESCGQCTPCRVGCQKAVQLM------QAPEWD 523

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             LL ++   +   +IC LG AA  PI+ ++++F   I
Sbjct: 524 RALLGDLCTAMADASICGLGQAAPNPIRLVMRHFSDEI 561


>gi|218460342|ref|ZP_03500433.1| NADH dehydrogenase I subunit F [Rhizobium etli Kim 5]
          Length = 263

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 215/263 (81%), Positives = 235/263 (89%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           ML D+DRIFTN+YGL+ KSL  +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF
Sbjct: 1   MLQDKDRIFTNIYGLKDKSLKGAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGF 60

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KWSFMPK    RPHYLVVNADESEPGTCKDRDIMRH+PHTLIEGCVIASFA+GA+ 
Sbjct: 61  PTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGANA 120

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
           A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLE
Sbjct: 121 AYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHGAGAYICGEETALLE 180

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPRLKPPFPAN+GLYGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTK
Sbjct: 181 SLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTK 240

Query: 241 LFSISGHVNYPCTVEESMSITFD 263
           LF +SGHVN PCTVEE M ITF 
Sbjct: 241 LFMLSGHVNKPCTVEEEMGITFR 263


>gi|332667238|ref|YP_004450026.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100]
 gi|332336052|gb|AEE53153.1| NADH dehydrogenase (quinone) [Haliscomenobacter hydrossis DSM 1100]
          Length = 549

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 118/381 (30%), Positives = 194/381 (50%), Gaps = 5/381 (1%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + ++LE   + ++ E+  SGLRGRGGAGF   +K + + K  ++   Y+V NADE +PG 
Sbjct: 169 LIQLLESDPEQLLEEITLSGLRGRGGAGFPLAIKLAGVKKENAE-EKYIVCNADEGDPGA 227

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             DR ++  +   ++ G  I+ +  GA    +Y+R E+      LQ A++          
Sbjct: 228 FSDRYLLEQKAQLVLFGMAISGYISGAQDGVLYIRAEYPEAISILQKAIEPFNRIFPHQK 287

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            +    D  + V    GAYICGEETALL SLEG + + R +PPFP   GL+G PT VNNV
Sbjct: 288 RNGERVDFKLHVVKAQGAYICGEETALLSSLEGLRPEVRTRPPFPTQYGLFGKPTAVNNV 347

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           E++A V  IL  G   +   G   + GTKL S+  + N P   E  M      +I +  G
Sbjct: 348 ETLANVYAILSDGGMAFKVIGTAKSSGTKLLSLDSYFNNPGLYEVDMGTPLSVVINELGG 407

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G++   + + A   GG     +P  ++    +D++     G  LG A+++ +     +++
Sbjct: 408 GLK---EPIKAFHIGGPLGGLVPLHKIADLTIDFESFASQGFLLGHASILSIPTRFPLLE 464

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
            +  L  F  HESCG+C PCR G+     ++++   G  Q  + +L  ++   +E  ++C
Sbjct: 465 YLEHLFAFTAHESCGKCFPCRIGSVRGKELLQKARAGNYQI-DRELWDDLIDTLEKGSLC 523

Query: 392 ALGDAAAWPIQGLIKNFRPLI 412
           ALG     P++  ++ F   +
Sbjct: 524 ALGGGLPLPVKNAMQYFPAEL 544


>gi|294083653|ref|YP_003550410.1| Respiratory-chain NADH dehydrogenase domain-containing protien
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663225|gb|ADE38326.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 572

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 139/399 (34%), Positives = 219/399 (54%), Gaps = 19/399 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
             +   D ++ G +  +  +L  EK  + +++ +  + LRG GGAGF TG KW  +    
Sbjct: 189 TARRFDDYVADGGYSLLKALLAGEKTAEDVLSVLDNTALRGLGGAGFPTGRKWRIVSGQP 248

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
              P  + VN DE EPGT KDR  + ++PH +IEG +IA+  +G    +IY+R E+    
Sbjct: 249 G--PRLMAVNGDEGEPGTFKDRLYLSNDPHRMIEGILIATKVVGIDACYIYMRDEYPEII 306

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
             L+  +    A+GL           ++ +  GAGAYICGEE+A++ES+EGK+G PR +P
Sbjct: 307 ALLKEELAAVEAAGLTDHT-------ELHLRRGAGAYICGEESAMIESIEGKRGLPRHRP 359

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           PF A  G++  PT VNNVE++  +  I+ +GA W++  G++ + G + +S+SG V  P  
Sbjct: 360 PFVAEKGIFDRPTLVNNVETLYWIRDIVEQGADWFNNQGKDGHPGPRSYSVSGRVAKPGV 419

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +      T +ELI   CGG+     +    +PGG+S   LPA +    +     L E G 
Sbjct: 420 IVAPAGSTVEELI-ALCGGMA-DGHSFKGYLPGGASGGILPASKSDIPLDFGGKLAEEGC 477

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            +G+ AV+V+    ++  A   L  F+ HESCGQCTPCR GT   + +M       +   
Sbjct: 478 FVGSHAVVVLSDQDNMWDAATNLLKFFAHESCGQCTPCRNGTEKAVTLM------QSANP 531

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +++LL E+S  +   +IC LG AA+ P+  ++K+F   I
Sbjct: 532 DVNLLGELSIAMGDASICGLGQAASNPLTSVMKHFPEDI 570


>gi|160902610|ref|YP_001568191.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
 gi|160360254|gb|ABX31868.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
          Length = 404

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 139/395 (35%), Positives = 230/395 (58%), Gaps = 11/395 (2%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           GKSL +      +  +   L      +IN++K SGLRGRGGAGF TG+KW  +  +  D 
Sbjct: 11  GKSLEEY----DFPGLKNALNMEPQQVINKIKESGLRGRGGAGFPTGIKWETVLSIEDD- 65

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             +++ NADE EPGT KDR ++ + P  ++EG +I+ +A G+   +IY+RGE++   + +
Sbjct: 66  TKFIICNADEGEPGTFKDRFLLENLPFKVLEGIIISGYATGSKYGYIYIRGEYVEAIKII 125

Query: 137 QAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + A+++ Y   +LG N     +  D+ +  GAGAY+CG+ET+L+ S+EG +G+ R+KPP 
Sbjct: 126 KKAIEKLYEKNILGENILNSDFSFDLKLVRGAGAYVCGDETSLINSIEGDRGKSRIKPPL 185

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P   GLYG PT VNNVE++A    I+    + YS  G E +RGTKL SISG VN P   E
Sbjct: 186 PVFEGLYGKPTVVNNVETLAAAAEIMSYDNNPYSEMGTEKSRGTKLVSISGDVNKPGVYE 245

Query: 256 ESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                +T  +++++  GG++   + +  VIPGG S   L   ++      Y+ L++MGS 
Sbjct: 246 VEFGKLTVKDIVQELAGGVK--GEKIGFVIPGGISTEALTEEEL-DVPYTYENLQKMGSN 302

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK-GIAQKR 373
           +G+  +IV+    + ++ +  +S F++ E+CG C PCREG   + +++  + K G    R
Sbjct: 303 IGSGGMIVVSSQRNYLEIVKNVSDFFRDETCGTCFPCREGNKNINKIVSDIYKRGYPTSR 362

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           EI+++ ++   +     C  G+++   I  + + F
Sbjct: 363 EIEIISDIQYAVSSAARCGFGESSLNLILSIFEKF 397


>gi|307942954|ref|ZP_07658299.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp.
           TrichSKD4]
 gi|307773750|gb|EFO32966.1| NAD-reducing hydrogenase HoxS subunit alpha [Roseibium sp.
           TrichSKD4]
          Length = 537

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 140/398 (35%), Positives = 220/398 (55%), Gaps = 19/398 (4%)

Query: 19  SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +L      G +  ++ +   + G   I +++ A+GLRG GGAGF TG KW  +  +    
Sbjct: 157 NLEAYRKDGGYQKLEDVRSGKVGALDIADQLLAAGLRGLGGAGFPTGTKWKIVNDLPG-- 214

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YL +N DE EPGT KDR  +  +PH L+EG +IA+ A+G    ++Y+R E+    E L
Sbjct: 215 PKYLTINGDEGEPGTFKDRFHLERDPHRLLEGALIAAHAVGVERIYLYMRDEYPAVLEIL 274

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +  +     +G++        ++D  +  GAGAYICGEE+A++ES+EGK+G PR +PPF 
Sbjct: 275 RREISALRDAGII-------TNIDFELRRGAGAYICGEESAMIESIEGKRGLPRHRPPFI 327

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT  +NVE++  +  IL +GA W++  GR  ++G + FS+SG V  P     
Sbjct: 328 AQVGLFGRPTLNHNVETLFWIRDILEKGADWFANQGRRGHKGFRSFSVSGRVKEPGVKLA 387

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              +T +EL+ + CGG+     N    +PGG+S   LPA  +    +D+  L + G  +G
Sbjct: 388 PAGVTMNELLTEFCGGME-EGHNFKGYLPGGASGGILPAS-LADEPLDFGTLDKHGCFIG 445

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           + A++V     D+      L  F+KHESCGQCTPCR GT  M+ ++           +  
Sbjct: 446 SHAIVVFSDKDDMRDVALNLMQFFKHESCGQCTPCRSGTEKMVSLL------KDPNWDKA 499

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            + ++   +   +IC LG AA+ P+  ++K F    + 
Sbjct: 500 KIADLDAVMRSASICGLGQAASNPVASVLKFFPEEFDR 537


>gi|316935781|ref|YP_004110763.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1]
 gi|315603495|gb|ADU46030.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris DX-1]
          Length = 428

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 163/416 (39%), Positives = 230/416 (55%), Gaps = 12/416 (2%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--- 70
            Q  SL+     G +  +   L++   + II  V+A+GLRGRGGAGF T  KW FM    
Sbjct: 14  RQPHSLAAWRGLGGYSALSLALKRHSPEAIIAMVEAAGLRGRGGAGFPTANKWRFMRTGS 73

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           +       YL VN DE+EPG+ KDR +M   PH LIEG  IA++AIGA    I VR E+ 
Sbjct: 74  ERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYAIGATEVIILVRDEYR 133

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
               +L  A+ E  A+GLLG +    G+D+ + VH  AG YI GEETAL+ ++EG++  P
Sbjct: 134 AAATALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGEETALIAAIEGERPVP 193

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R +PP+PA  GL+G PTTVNNVE+++ VP+I+  GA WY      +  GTKL+ ISG V 
Sbjct: 194 RHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGADWYRSLSFTDEGGTKLYGISGCVE 253

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P  +E  M  T  EL+ +  G        LLA  PGG +       ++    +D+   K
Sbjct: 254 RPQLIEAPMGSTARELLHRAGG--IRNGRALLAFQPGGGATAFFEKAEL-DVPLDFTSTK 310

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
           + GS LGT A+IV+D     + AI R   FY  ESCG CTPCR+G  W+ ++++ L  G 
Sbjct: 311 KAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDGLPWVSKLLDTLEAGK 370

Query: 370 AQKREIDLLYEVSKN--IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             + +IDLL++        GR+ C L   A  P++  ++ F  +    +  +  C 
Sbjct: 371 GTRADIDLLHQHVALSGPSGRSYCDLNTGALTPLRSGLERFGDIFTAHLQGF--CP 424


>gi|192973053|gb|ACF06952.1| formate dehydrogenase beta subunit [uncultured Roseobacter sp.]
          Length = 561

 Score =  363 bits (933), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 141/398 (35%), Positives = 212/398 (53%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             + L+   S G +  ++++   G    +  ++K SGLRG GGAGF +G KW F+     
Sbjct: 182 DYEDLAAYRSAGGYARLEELRAGGDWQEVQAQIKQSGLRGLGGAGFPSGTKWGFVRSNAG 241

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  +FIY+R E+     
Sbjct: 242 --PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAETSFIYMRDEYPAVLH 299

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L   +     +GL+ +         I +  GAGAYICGEE+A++ES+EGK+G PR +PP
Sbjct: 300 ILAQEIAALEGAGLVPAGY-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPP 352

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           F A VG++  PT V+NVE++  V  ++R G    +        G + +S+SG V  P   
Sbjct: 353 FVAAVGIHNRPTLVHNVETLLWVARVVREGPECLNAVEHNGRTGLRSYSVSGRVKNPGVH 412

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  ++I   CGG+        A  PGG S   LPA  +    +D+D L+ +G+ 
Sbjct: 413 LLPAGSTITDII-AACGGM-LEGHIFSAYQPGGPSSGLLPAS-IHDVPLDFDTLQPLGTF 469

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A+  +
Sbjct: 470 IGSAAVVVLSDQDSPRAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QAETWD 523

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             LL +++  +   +IC LG AA  PI+ +IK F   I
Sbjct: 524 QPLLEDLTTAMVEASICGLGQAAPNPIKSVIKYFPSEI 561


>gi|38637753|ref|NP_942727.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia
           eutropha H16]
 gi|123467|sp|P22317|HOXF_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit alpha
 gi|141947|gb|AAC06140.1| NAD-reducing hydrogenase [Ralstonia eutropha H16]
 gi|32527091|gb|AAP85841.1| NAD-reducing hydrogenase diaphorase moiety large subunit [Ralstonia
           eutropha H16]
          Length = 602

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 132/391 (33%), Positives = 206/391 (52%), Gaps = 15/391 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +D+ L    + +I  +  S LRGRGGAGFSTG+KW       S+   Y++ NADE EPGT
Sbjct: 197 LDQCLLLKPEQVIETIVDSRLRGRGGAGFSTGLKWRLCRDAESE-QKYVICNADEGEPGT 255

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR ++   P  +  G VIA++AIG     +Y+RGE+   ++ L+  + E    GLLG 
Sbjct: 256 FKDRVLLTRAPKKVFVGMVIAAYAIGCRKGIVYLRGEYFYLKDYLERQLQELREDGLLGR 315

Query: 152 NSK--LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                 G+D DI +  GAGAYICG+E+AL+ES EGK+G PR+KPPFP   G  G PT+VN
Sbjct: 316 AIGGRAGFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPTSVN 375

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE+ A V  I+  GA W+   G  ++ GT+L S++G  + P   E    +T +E++   
Sbjct: 376 NVETFAAVSRIMEEGADWFRAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVLAMV 435

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
                    +  AV   G S  C+   +     + Y+ L          A  + +   D+
Sbjct: 436 GA------RDARAVQISGPSGECVSVAKDGERKLAYEDLS------CNGAFTIFNCKRDL 483

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           ++ +     F+  ESCG C PCR G   + R +E ++ G A ++++D +      +   +
Sbjct: 484 LEIVRDHMQFFVEESCGICVPCRAGNVDLHRKVEWVIAGKACQKDLDDMVSWGALVRRTS 543

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            C LG  +  PI   ++ F  + + ++ ++ 
Sbjct: 544 RCGLGATSPKPILTTLEKFPEIYQNKLVRHE 574


>gi|118589441|ref|ZP_01546847.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614]
 gi|118438141|gb|EAV44776.1| dehydrogenase subunit, putative [Stappia aggregata IAM 12614]
          Length = 540

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 143/397 (36%), Positives = 218/397 (54%), Gaps = 19/397 (4%)

Query: 20  LSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L    + G +  ++++   E     I ++   +GLRG GGAGF TG KW  +  + +  P
Sbjct: 161 LDSYRAAGGYALLERVRAGELDAVEIADKALDAGLRGLGGAGFPTGTKWKIVHDLPA--P 218

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL +N DE EPGT KDR  +  +PH L+EG +IA+ A+ A   ++Y+R E+    E L+
Sbjct: 219 KYLTINGDEGEPGTFKDRVHLERDPHRLLEGALIAAHAMSAARIYLYMRDEYPAVLEILR 278

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
             ++    +G++         +DI +  GAGAYICGEE+A++ES+EGK+G PR +PPF A
Sbjct: 279 TEIEALRQAGII-------TTIDIELRRGAGAYICGEESAMIESIEGKRGLPRHRPPFIA 331

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+  PT  +NVE++  +  I+ +G  W++  GR  ++G + FS+SG V  P      
Sbjct: 332 QVGLFDRPTLNHNVETLFWIRDIVEKGPEWFASQGRRGHKGYRSFSVSGRVKEPGVKLAP 391

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT +EL+ + CGG+          +PGG+S   LPA  +    +D+  L + G  +G+
Sbjct: 392 AGITMNELLVEFCGGME-DGHAFKGYLPGGASGGILPAS-LADEPLDFGTLDKYGCFIGS 449

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A++V     D+      L  F+KHESCGQCTPCR GT  M  ++     G   K +I  
Sbjct: 450 HAIVVFSDQDDMRDVALNLMRFFKHESCGQCTPCRSGTEKMEHLL---AAGDWDKAKIAD 506

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           L  V   +   +IC LG AA+ P+  ++K F    E 
Sbjct: 507 LDAV---MRSASICGLGQAASNPVTSVLKFFPEEFEA 540


>gi|94310464|ref|YP_583674.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Cupriavidus metallidurans CH34]
 gi|93354316|gb|ABF08405.1| NAD-reducing hydrogenase diaphorase moiety large subunit
           [Cupriavidus metallidurans CH34]
          Length = 602

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 131/391 (33%), Positives = 205/391 (52%), Gaps = 15/391 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +D  L    + +I+E+  S LRGRGGAGF+TG+KW    +  SD   Y++ NADE EPGT
Sbjct: 197 LDHCLTLRPEQVIDEIIESKLRGRGGAGFTTGLKWQLCRRALSD-TKYVICNADEGEPGT 255

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR ++   P  +  G  IA+ AIG     +Y+R E+   ++ L+  + +    GLLG 
Sbjct: 256 FKDRALLTRSPKEVFIGMAIAAHAIGCRHGIVYLRAEYFYLKDYLERQLQQLRDDGLLGR 315

Query: 152 NSK--LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                  +D DI +  GAGAYICG+E+AL+ES EGK+G PR+KPPFP   G  G PT VN
Sbjct: 316 AIGVRRDFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQQGYLGKPTCVN 375

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE+ A V  I+  GA W+S  G  ++ GT+L S++G  + P   E    +T +E++   
Sbjct: 376 NVETFAAVSRIMEEGADWFSAMGTPDSAGTRLLSVAGDCSKPGIYEVEWGVTLNEVLAMV 435

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
                       AV   G S  C+   +     + Y+ L          A  + +R+ D+
Sbjct: 436 GA------KEARAVQISGPSGECVSVEKDGERRLAYEDLS------CNGAFTIFNRNRDL 483

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           +  +     F+  ESCG C PCR G   + R +E ++ G A ++++D +      +   +
Sbjct: 484 LDIVKDYMQFFVDESCGICVPCRAGNVDLHRKVEWVIAGKACQKDLDDMVSWGALVRKTS 543

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            C LG  +  PI   ++ F  + ++++ ++ 
Sbjct: 544 RCGLGATSPKPILTTLEKFPEIYQDKLVRHE 574


>gi|118588157|ref|ZP_01545566.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Stappia aggregata IAM 12614]
 gi|118438863|gb|EAV45495.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Stappia aggregata IAM 12614]
          Length = 626

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 147/390 (37%), Positives = 210/390 (53%), Gaps = 16/390 (4%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             + K        II+ ++ SGLRG GGAGF+TG KW F     ++  H+++ NADE EP
Sbjct: 215 AGLAKAATITPTQIISAIEESGLRGCGGAGFTTGRKWRFAASERAE-KHFVICNADEGEP 273

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR ++   PH LIEG  IA+ A+GA    +Y+RGE++  RE L   ++E    GLL
Sbjct: 274 GTFKDRVLLTERPHLLIEGMTIAARAVGAREGILYLRGEYVYLRELLLQVLEERRWRGLL 333

Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           G +     G+D DI +  GAGAYICGEE AL+ S EG  G+P+ +PPFP N G  G PT 
Sbjct: 334 GKDILGVKGFDFDIRLQLGAGAYICGEEGALISSCEGLPGEPKTRPPFPVNRGYLGYPTV 393

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+      IL +GA+W++  G E + GTKLFS+ G    P   E     T  EL+ 
Sbjct: 394 VNNVETFCHAARILDKGAAWFNAMGMEGSHGTKLFSVCGDCLNPGIYELPYGHTVWELLA 453

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              G      ++  AV  GG S   +         + +D L   G      A+IV +   
Sbjct: 454 MVGG------EDAAAVQVGGPSGTMIARDSFH-RKLTFDDLATGG------AIIVFNGER 500

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           ++++ +     F+ HESCG CTPCR G  ++ + +++  KG+A   +ID L ++S  I  
Sbjct: 501 NVLEIVEYYMSFFVHESCGYCTPCRVGNVFLQKAIQKFRKGLANPEDIDYLKDLSGTIIE 560

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERID 417
            + C LG  +  P+   +KNF  +    I 
Sbjct: 561 TSRCGLGMTSPNPVLTTLKNFPLVYSAVIK 590


>gi|114321659|ref|YP_743342.1| NADH dehydrogenase (quinone) [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228053|gb|ABI57852.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 563

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 147/395 (37%), Positives = 219/395 (55%), Gaps = 21/395 (5%)

Query: 22  DSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
              + G +  +   L   +    +I+ ++ +GLRG GGAGF  G KW  +    +  P +
Sbjct: 185 AYRAAGGYRVLADCLSGRREPASVIDTLERAGLRGMGGAGFPAGRKWRTLRDQPA--PRH 242

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +VVN DE EPGT KDR  +  +PH  +EG +IA++AI A   ++Y+R E+   R  L+  
Sbjct: 243 VVVNIDEGEPGTFKDRHYLESDPHRFLEGALIAAWAIEADAIWLYLRDEYAAARALLRQC 302

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           + E  A          G    + +  GAGAYICGEE+AL+ES+EGK+G PRL+PP  A V
Sbjct: 303 LAELQADPP-------GPLPAMHLRRGAGAYICGEESALIESIEGKRGLPRLRPPLVAQV 355

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GL+G PT  +N+E++  V  IL  GA W++  GR   +G + +S+SG V +P        
Sbjct: 356 GLFGHPTLAHNLETLHWVRDILAHGADWFADQGRHGRQGLRSYSVSGRVRHPGVHLAPAG 415

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG--SGLGT 317
           IT  ELI+++CGG+  G + L A  PGG+S   LPA       +D+D L+       +G+
Sbjct: 416 ITLRELIDEYCGGMAPGHE-LKAFFPGGASGGILPAAA-ADTPLDFDTLQAYDPHCFIGS 473

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AAVIV+ +   + +A      F++HESCGQCTPCR GT     +M R         +  L
Sbjct: 474 AAVIVLSQQDSVREAALNAMRFFQHESCGQCTPCRVGTAKAAALMAR------PVWDAPL 527

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L E++  +   +IC LG AA  P++ ++K F   +
Sbjct: 528 LEELADCMADASICGLGQAAPNPLRCVLKYFPEEV 562


>gi|167949925|ref|ZP_02536999.1| NADH-quinone oxidoreductase, chain F [Endoriftia persephone
           'Hot96_1+Hot96_2']
 gi|110589392|gb|ABG77205.1| NADH dehydrogenase I ubiquinone reductase; F subunit 51 kDa
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 321

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 154/304 (50%), Positives = 203/304 (66%), Gaps = 4/304 (1%)

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             + Y+RGEF    E  +A ++E  A+GLLG +    G+D ++  H GAGAY+CGEETAL
Sbjct: 13  AGYNYIRGEFWEPYERFEACLEEARAAGLLGEDLFGSGFDFELHAHLGAGAYVCGEETAL 72

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           LES+EGKKGQPR KPPFPA+ GLYG PT +NN ES+A +P IL +G  W++  G +N+ G
Sbjct: 73  LESIEGKKGQPRFKPPFPAHFGLYGRPTIINNTESLASIPMILEKGGKWFADVGVKNSGG 132

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           +KLFSISG++N P   E  M   F EL+E   G        + AVIPGGSS P +P   M
Sbjct: 133 SKLFSISGNLNNPGVFEIPMGTPFSELLEMAGGM--KDGRKIKAVIPGGSSSPVIPGEMM 190

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               MDYD +   GS LG+ AVIV+D +  +++ + R+S FY  ESCGQCTPCREGTGW+
Sbjct: 191 MDLTMDYDAIANAGSMLGSGAVIVLDDTNCMVRVLERMSYFYHEESCGQCTPCREGTGWL 250

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            RV+ R+  G   + ++DLL +V+  I GRTICALGDAAA P+QG++K FR   +  ID 
Sbjct: 251 YRVVSRIENGKGCQEDLDLLDDVAAKIAGRTICALGDAAAMPVQGMLKYFRDEFQYHID- 309

Query: 419 YHRC 422
           + RC
Sbjct: 310 HQRC 313


>gi|1617570|gb|AAB57889.1| NAD-reducing hydrogenase alpha subunit [Rhodococcus opacus]
          Length = 604

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 130/392 (33%), Positives = 204/392 (52%), Gaps = 15/392 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           ++  L    + II+ +  S LRGRGGAGFSTG+KW       SD   Y++ NADE EPGT
Sbjct: 197 LELCLALRPEQIIDRIIESKLRGRGGAGFSTGLKWQLCRTAVSD-DKYIICNADEGEPGT 255

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR ++   P  +  G +IA+ AIG+    +Y+R E+I  ++ L+  + E    GLLG+
Sbjct: 256 FKDRVLLTRSPKKVFMGMIIAARAIGSRNGILYLRWEYIYLKDYLERQLQELRDEGLLGA 315

Query: 152 NSK--LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                 G+D DI +  GAGAYICG+E+AL+ES EGK+G PR+KPPFP   G  G PT VN
Sbjct: 316 RIGGQSGFDFDIRIQMGAGAYICGDESALIESCEGKRGTPRVKPPFPVQEGYLGKPTCVN 375

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE+ A    I+  G +W+   G   + GT+L S++G  + P   E    +T +E++   
Sbjct: 376 NVETFAAAARIMEEGPNWFRALGTPESTGTRLLSVAGDCSRPGIYEVEWGVTLNEVLTTV 435

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
                    +  AV   G S  C+   +     M Y+ +          A  + +   D+
Sbjct: 436 GA------RDARAVQISGPSGQCVSVAEDGERRMAYEDIS------CNGAFTIFNTERDL 483

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           ++ +     F+  ESCG C PCR G   + + +E ++ G A ++++D +      ++  +
Sbjct: 484 LEIVKDFMQFFVDESCGICVPCRVGNIDLHKKVELVIAGKACQKDLDDVVSWGALVKKTS 543

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
            C LG  +  PI   +  F  +  +R+ +  +
Sbjct: 544 RCGLGATSPNPILTTLDKFPEIYTKRLRKQKK 575


>gi|262275748|ref|ZP_06053557.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP
           101886]
 gi|262219556|gb|EEY70872.1| NAD-reducing hydrogenase hoxS subunit alpha [Grimontia hollisae CIP
           101886]
          Length = 609

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 134/391 (34%), Positives = 201/391 (51%), Gaps = 15/391 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +   +      +I+    S LRGRGGAGFS G+KW        D   Y++ NADE EPGT
Sbjct: 197 IRDAVTLVPMEVIDATSTSKLRGRGGAGFSAGLKWRLCHDAAGD-TKYVICNADEGEPGT 255

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR I+   P  +  G +IA +AIGA    +Y+R E+    + L+  ++      LLG+
Sbjct: 256 FKDRVILTESPEQVFAGMIIAGYAIGAREGILYLRYEYRYLVDYLEKTLNSLRERNLLGA 315

Query: 152 NSK--LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                  +  DI +  GAGAYICG+E+AL+ES EGK+G PR+KPPFP + G  GCPT VN
Sbjct: 316 KIGGNDKFSFDIRIQLGAGAYICGDESALIESCEGKRGTPRVKPPFPVHQGFMGCPTAVN 375

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE++A V  I  +GA WY   G   + GT+L S+SG V  P   E    I+  +++E  
Sbjct: 376 NVETLANVARIFEKGARWYESMGTAESAGTRLISVSGDVEKPGIYEIEWGISLKDVLELV 435

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
                    N       G S  C+ A +    +  Y  L   GS      ++V     ++
Sbjct: 436 GA------RNPRVAQISGPSGECVSAAKDGNRVFSYKDLSCNGS------LMVFSYERNL 483

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           ++ + R   F+  ESCG CTPCR G   +   +  +++G A ++++D + E +  I G +
Sbjct: 484 LEIVRRFIHFFMEESCGICTPCRAGNVELYNKVSLIIEGRAVEQDLDEIVEWANIIRGSS 543

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            C LG  +  PI   ++ F    ++++   H
Sbjct: 544 RCGLGTTSPKPIITSMQAFPEEYKQKLVTQH 574


>gi|218514662|ref|ZP_03511502.1| NADH dehydrogenase I subunit F [Rhizobium etli 8C-3]
          Length = 283

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 225/283 (79%), Positives = 249/283 (87%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
            +MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF TG+KWSFMPK    RPHYLV
Sbjct: 1   GAMSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 60

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
           VNADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ A+IYVRGE+IRERE+LQAA+D
Sbjct: 61  VNADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANAAYIYVRGEYIREREALQAAID 120

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
           ECY  GLLG N+KLG+D+DI VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN+GL
Sbjct: 121 ECYDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGL 180

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
           YGCPTTVNNVESIAV PTILRRGA W+S  GR NN GTKLF +SGHVN PCTVEE M IT
Sbjct: 181 YGCPTTVNNVESIAVAPTILRRGAGWFSSIGRPNNVGTKLFMLSGHVNKPCTVEEEMGIT 240

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           F EL+++H GGIRGGWDNLLAVIPGG+S P +PA  +    MD
Sbjct: 241 FRELVDRHAGGIRGGWDNLLAVIPGGASCPIVPAKDIIDCPMD 283


>gi|120405070|ref|YP_954899.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1]
 gi|119957888|gb|ABM14893.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 603

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 133/387 (34%), Positives = 200/387 (51%), Gaps = 15/387 (3%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + + L    +  ++ +  SGLRG GGAGF TG+KW        +   Y++ NADE EPGT
Sbjct: 197 LKRCLANTPEQTVDMISESGLRGFGGAGFRTGLKWRLCRAAPGE-DKYVICNADEGEPGT 255

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
            KDR ++   P  +  G VIA+++IGA    +Y+R E+      LQ  + E    GLLG+
Sbjct: 256 FKDRALLTRSPKDVFLGMVIAAYSIGARDGILYLRAEYAYLARYLQRQLQELRDDGLLGA 315

Query: 152 NSK--LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
           +     G+D DI +  GAGAYICGEE+AL+ES EG +G PRLKPP+P   G  G PTTVN
Sbjct: 316 DIGGLPGFDFDIRIQLGAGAYICGEESALIESCEGNRGTPRLKPPYPIQEGYLGKPTTVN 375

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE+      +   GA W+   G  ++ GT+L S++G  + P   E    IT D+++   
Sbjct: 376 NVETFVAASRVTAEGAEWFRSMGTADSAGTRLLSVAGDCSAPGVYEVEWGITLDDVLAMV 435

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
                    +  AV  GG S  C+         + Y+ +          AV + + + D+
Sbjct: 436 GA------PDARAVQIGGPSGECVSVAVDGRRRIAYEDI------PCNGAVTIFNATRDL 483

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           ++ +   + F+  ESCG C PCR GT  +   M R++ G   ++++D +      I   +
Sbjct: 484 LECVTDYTKFFADESCGICVPCRAGTVDLHDTMRRILAGNGTRQDLDDVAGRGALIRSTS 543

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERI 416
            C LG  AA PI   +  F  + +ER+
Sbjct: 544 RCGLGATAANPILTTLTKFPEMYQERL 570


>gi|319637988|ref|ZP_07992752.1| NADH dehydrogenase [Neisseria mucosa C102]
 gi|317400633|gb|EFV81290.1| NADH dehydrogenase [Neisseria mucosa C102]
          Length = 417

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 201/398 (50%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +     +
Sbjct: 16  GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKN 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +Y+         S
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAILYINPHQTESIAS 134

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  H GG+        AV  GG S   L A  +    +D+  ++E  S 
Sbjct: 255 ELPMGTTLKSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTAKDL-DVPLDFVSVRERKSS 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCGQC PC+ GT  + R++ R+  GI    +
Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFAANSCGQCPPCKGGTFQLSRLLNRVDTGIGTPDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410


>gi|258591614|emb|CBE67915.1| Putative dehydrogenase, similar to gamma (5') and beta (3')
           subunits of formate dehydrogenase and to nuoE and nuoF
           of NADH dehydrogenase (fdhB2/C2) [NC10 bacterium 'Dutch
           sediment']
          Length = 710

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 144/415 (34%), Positives = 219/415 (52%), Gaps = 16/415 (3%)

Query: 1   MLTDQDR-IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGA 58
            L  Q R +      +    L+D++ +G +    ++LE+G    +INEVKASGL GRGGA
Sbjct: 298 FLRGQHRAVLERCGMVDVNDLADALRQGSYATFGRVLEQGDPLAVINEVKASGLTGRGGA 357

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            F    KW    +  +  P YLV+N +E EPG  KDR +M  +PH L+EG ++ +FA GA
Sbjct: 358 YFGAAHKWEAC-RNATGSPKYLVINGEEGEPGIFKDRHLMEGDPHRLLEGILLTAFACGA 416

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +++ GE       ++ A+    A GLLG    +  +   + +  G+G +I GEETA
Sbjct: 417 SRGILFINGEAELSARRMENALRSAEAVGLLGERILESDFSFQLELRRGSGGFILGEETA 476

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+E++EGK+  PR KPPFP   GL+G PT ++NVE++  VP I+ RGA+W++  G    R
Sbjct: 477 LMEAIEGKRAMPRPKPPFPVEAGLWGKPTVIHNVETLTAVPLIVSRGAAWFTALG--GGR 534

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKLF +SGH+  P  VE  M IT   LI    GG       L A + GG S   + + +
Sbjct: 535 GTKLFGLSGHLARPGIVEVPMRITLRHLI-GEIGGGGKDGQTLKAALVGGPSGVIVRSSR 593

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               ++    +       G+  V+ +  S  I      L  F   ESCG+CTPCREGTG 
Sbjct: 594 FDEPLIPGGTISP-----GSGGVVALGDSVSIDDVTRTLLTFNAQESCGKCTPCREGTGR 648

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           ++ ++++      ++     L E+++ I   ++C LG +A   +   +  F   I
Sbjct: 649 LLAILQQSQHSGRRQA----LEELAEVIRLASLCGLGQSAPLSLLSALDQFPEDI 699


>gi|313668001|ref|YP_004048285.1| NADH dehydrogenase [Neisseria lactamica ST-640]
 gi|313005463|emb|CBN86898.1| putative NADH dehydrogenase [Neisseria lactamica 020-06]
          Length = 417

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +      
Sbjct: 16  GADLTAWRKVGGGEGLLAALA-DPQSIVSKLQDANLCGMGGAGFPTWRKWEAAVAAQSKH 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +YV         S
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIAS 134

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  H GG+        AV  GG S   L    +    +D+  ++E  S 
Sbjct: 255 ELPMGTTLQSLIYDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCGQC PC+ GT  + R++ R+  GI    +
Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410


>gi|302349194|ref|YP_003816832.1| Putative sulfur reductase membrane anchor subunit, membrane anchor
           PsrC-like protein [Acidilobus saccharovorans 345-15]
 gi|302329606|gb|ADL19801.1| Putative sulfur reductase membrane anchor subunit, membrane anchor
           PsrC-like protein [Acidilobus saccharovorans 345-15]
          Length = 487

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 131/390 (33%), Positives = 214/390 (54%), Gaps = 7/390 (1%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +SL   +  G    +++ L   +  +I+EVK S LRGRGGA F TG+KW    +  +   
Sbjct: 93  RSLQQYLQLGGMRGLERALSMPQAEVIDEVKRSQLRGRGGAYFPTGLKWESAMRQAAP-T 151

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+VVN DE + G   DR +M  +P+ +IEG +IA++AIGA   + Y+R E+     +++
Sbjct: 152 KYVVVNGDEGDAGAYVDRFLMEWDPYLVIEGALIAAYAIGAGKVYFYIRREYPGAVAAVR 211

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            AV+E   +G +GS +  G +V++ VH G G+Y+ GEETA++ ++ G++ +P  +PP+P 
Sbjct: 212 RAVEEVREAGYIGSKASRGPNVELEVHVGRGSYVVGEETAMINAIMGRRPEPTPRPPYPT 271

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNVE+++ VP I+  G   Y+  G   +RGTK+ S+S   + P   E  
Sbjct: 272 ERGLFGMPTVVNNVETLSSVPWIIENGGDAYAELGFSRSRGTKVLSLSSTFSRPGLYEVE 331

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGS-SVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
             ++  E++    GG+R G   L  ++ GG  + P LP+       +  + L+ +G+ LG
Sbjct: 332 FGVSLREVVYDMGGGVRFG--KLKFLVVGGPLAGPVLPSE--LDVKLGVEELRAIGASLG 387

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM-ERLVKGIAQKREI 375
              VI     T +++A+  +  F   ESCG+C PCR GT     ++ E L +G     E 
Sbjct: 388 HGNVIAFSDDTSMLEALHEIVHFASFESCGKCFPCRLGTARADEILEEALSRGYLTPAEA 447

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           D L  ++  +   ++C  G A    I   +
Sbjct: 448 DELKSIATAMRAASLCGHGQATGDAILSFL 477


>gi|222111968|ref|YP_002554232.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Acidovorax ebreus TPSY]
 gi|221731412|gb|ACM34232.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidovorax ebreus TPSY]
          Length = 661

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 148/422 (35%), Positives = 222/422 (52%), Gaps = 45/422 (10%)

Query: 20  LSDSMSRGHWDNVDKILEKGR---DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS-- 74
           L+   +RG +  +   L +G    D ++  ++ SGLRG GGAGF  G KW  + +  +  
Sbjct: 225 LAAYRARGGY-ALAAGLAQGHVPADGVLAAMEDSGLRGLGGAGFPAGRKWRIVREQAALA 283

Query: 75  ------------------------DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCV 110
                                        + VN DE EPGT KDR  +  +PH  +EG +
Sbjct: 284 GRQAAPSEAAAPSAGSGPREAGERGSVALMAVNIDEGEPGTFKDRTYLERDPHRFLEGVL 343

Query: 111 IASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAY 170
           +A+  +G    +IY+R E+   R  LQAA+ E  A               I +  GAGAY
Sbjct: 344 VAAQVVGTAEVYIYLRDEYHGCRALLQAAIAELQADPPCAL-------PRIELRRGAGAY 396

Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230
           ICGEE+A++ES+EGK+G+PR++PP+ A VGL+G PT  +N E++  V  I+ +G  W++ 
Sbjct: 397 ICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRPTLEHNFETLYWVRDIVEKGPQWFAS 456

Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
           FGR   RG + FS+SG V  P        IT  EL++++CGG+      L A +PGG+S 
Sbjct: 457 FGRHGRRGLRSFSVSGRVKEPGVKLAPAGITLRELVDEYCGGMA-EGHVLYAYLPGGASG 515

Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
             LPA ++    +D+D L+  G  +G+AAVIV+ +      A   +  F+ HESCGQCTP
Sbjct: 516 GILPA-RLADVPLDFDTLQPHGCFIGSAAVIVLSQHDRARDAALNMMRFFAHESCGQCTP 574

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
           CR GT    ++M       A   + D L ++++ +   +IC LG AA  PI+ + K F  
Sbjct: 575 CRVGTAKAAQLM------QAPLWDEDTLDDLAQVMADASICGLGQAAPNPIRCIHKYFAH 628

Query: 411 LI 412
            +
Sbjct: 629 EV 630


>gi|254464678|ref|ZP_05078089.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I]
 gi|206685586|gb|EDZ46068.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium Y4I]
          Length = 562

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 219/396 (55%), Gaps = 19/396 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           ++ +D  + G +  +  +   G  + +  +VK +GLRG GGAGF +G KW F+    ++ 
Sbjct: 185 ETFADYEAEGGYAALKDLRANGDWEAVQAKVKEAGLRGLGGAGFPSGTKWGFVR--ANEG 242

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  AFIY+R E+    E L
Sbjct: 243 PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEIL 302

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +  +     +G++ +         I +  GAGAYICGEE+A++ES+EGK+G+PR +PPF 
Sbjct: 303 RREIKALEEAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFV 355

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VG++G PT V+NVE++  V  I R G    +   +   +G + +S+SG V  P     
Sbjct: 356 AQVGVFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKKPGVHLL 415

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++IE  CGG+        A  PGG S   LPA  M    +D+D L+  G+ +G
Sbjct: 416 PAGSTITDIIE-ACGGM-LDGHAFKAYQPGGPSSGLLPAS-MNDIPLDFDTLQPHGTFIG 472

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+V+        A   +  F++ ESCGQCTPCR G    +++M        +K +  
Sbjct: 473 SAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------SEKKWDQG 526

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL E+S  +   +IC LG AA  PI+  +K+F   +
Sbjct: 527 LLEELSTAMVDASICGLGQAAPNPIRLTMKHFPDEV 562


>gi|170741451|ref|YP_001770106.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195725|gb|ACA17672.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium sp. 4-46]
          Length = 572

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 141/396 (35%), Positives = 209/396 (52%), Gaps = 23/396 (5%)

Query: 19  SLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
                   G +  ++++       + ++  +    LRG GGAGF TG KW  +       
Sbjct: 189 DFDAYRDAGGYRTLERLRAGDLSVEDVLKVLDDGSLRGLGGAGFPTGRKWRSVRGEPG-- 246

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P  + VN DE EPGT KD+  +  +PH  +EG +I +  + A   ++Y+R E+   R+ L
Sbjct: 247 PRLMAVNGDEGEPGTFKDQLYLNTDPHRFLEGTLIGAHVVEAEDVYLYIRDEYPIARQIL 306

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
              + +    G             + +  GAGAYICGEE++L+ES+EGK+G PR KPP+P
Sbjct: 307 AREIAKLPPGGP-----------RLHLRRGAGAYICGEESSLIESIEGKRGLPRHKPPYP 355

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
             VGL+G PT +NNVE++  +  ++ RG  W+   GR    G + +S+SG V  P     
Sbjct: 356 FQVGLFGRPTLINNVETLYWIRDLIERGPDWWKSHGRNGRTGLRSYSVSGRVREPGVKLA 415

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              +T  ELIE+ CGG+        A +PGG+S   LPA  M    +D+  L++ G  +G
Sbjct: 416 PAGVTIRELIEEFCGGMA-EGHRFAAYLPGGASGGILPAA-MDDIPLDFGTLEKYGCFIG 473

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+V+    DI  A   L  F++ ESCGQCTPCR GT     +ME  V       + D
Sbjct: 474 SAAVVVLSDKDDIRGAALNLMRFFEDESCGQCTPCRVGTQKARMLMESGV------WDTD 527

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL E+S+ +   +IC LG AA+ P+  +IK F  L 
Sbjct: 528 LLGELSQCMRDASICGLGQAASNPLTSVIKYFPDLF 563


>gi|255068411|ref|ZP_05320266.1| protein HymB [Neisseria sicca ATCC 29256]
 gi|255047352|gb|EET42816.1| protein HymB [Neisseria sicca ATCC 29256]
          Length = 417

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 136/398 (34%), Positives = 200/398 (50%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +      
Sbjct: 16  GVDLAAWRKVGGGEGLLAALA-DPQSIVSKLQDANLCGMGGAGFPTWRKWEAAVAAQSKH 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +YV         S
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAIMYVNPHQTESVAS 134

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 135 IVPAIEQWKKSDLFIRIENYLGKPLDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 195 FPAESGVAGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  H GG+        AV  GG S   L A  +    +D+  ++E  S 
Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTAKDL-DVPLDFVSVRERKSS 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCGQC PC+ GT  + R++ R+  GI    +
Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410


>gi|227553185|ref|ZP_03983234.1| NADH dehydrogenase (quinone) [Enterococcus faecalis HH22]
 gi|227177711|gb|EEI58683.1| NADH dehydrogenase (quinone) [Enterococcus faecalis HH22]
          Length = 394

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 137/394 (34%), Positives = 217/394 (55%), Gaps = 6/394 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG       L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
             ++ ++ +  +  A   ++  L ++  ++   +
Sbjct: 360 TRILELLSKFNRNEATASDLPRLEKMLTHVTRLS 393


>gi|261363678|ref|ZP_05976561.1| protein HymB [Neisseria mucosa ATCC 25996]
 gi|288568227|gb|EFC89787.1| protein HymB [Neisseria mucosa ATCC 25996]
          Length = 417

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +      
Sbjct: 16  GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQDANLCGMGGAGFPTWRKWEAAVAAQSKH 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +YV         S
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAIMYVNPHQTESVAS 134

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 135 IVPAIEQWKKSDLFIRIENYLGKPLDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 195 FPAESGVAGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  H GG+        AV  GG S   L    +    +D+  ++E  S 
Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCGQC PC+ GT  + R++ R+  GI    +
Sbjct: 313 LGTGAMIVISEGTSVVRKVAEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410


>gi|83950636|ref|ZP_00959369.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM]
 gi|83838535|gb|EAP77831.1| formate dehydrogenase, beta subunit [Roseovarius nubinhibens ISM]
          Length = 561

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 150/398 (37%), Positives = 214/398 (53%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             ++L    + G +  + +I + G    I + +  +GLRG GGAGF +G KW F+     
Sbjct: 182 DYQTLDAYRAEGGYARLAEIRDGGDFETIQQTLLDAGLRGLGGAGFPSGRKWGFVRAAQG 241

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E+    E
Sbjct: 242 --PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAETCFIYMRDEYPAVLE 299

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L   +     +GL+           I +  GAGAYICGEE+A++ES+EGK+G PR +PP
Sbjct: 300 ILAREIAALEEAGLVAPGY-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPP 352

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           F A VG++G PT VNNVE++  V  +LR G    SG  +   +G + FS+SG V  P   
Sbjct: 353 FVAQVGIFGRPTLVNNVETLLWVARVLREGPEILSGVEKNGRKGLRSFSVSGRVKNPGVH 412

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  ++IE  CGG+     +  A  PGG S   LPA  M    MD+D L+E G+ 
Sbjct: 413 LLPAGSTMQDIIE-ACGGM-LDGHSFKAYQPGGPSAGLLPAS-MSDIPMDFDVLQEHGTF 469

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AA++V+        A   +  F++ ESCGQCTPCR G    +++M       A   +
Sbjct: 470 IGSAAIVVLSDRDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADTWD 523

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             LL E+   +   +IC LG AA  PI+  +K+F   I
Sbjct: 524 QPLLEELCTAMADASICGLGQAAPNPIRLTMKHFPDEI 561


>gi|217970648|ref|YP_002355882.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
 gi|217507975|gb|ACK54986.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
          Length = 627

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 146/382 (38%), Positives = 215/382 (56%), Gaps = 15/382 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E+G   ++ E++ SGLRGRGGAGF + +KW    +      HY++ NADE EPGT KDR 
Sbjct: 190 ERGPTGLLWEIERSGLRGRGGAGFGSDIKWRSC-RDAWGDAHYVICNADEGEPGTFKDRV 248

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KL 155
           ++      +++G  IA  AIGA+  FIY+RGE+    + L+  + +     LLG N    
Sbjct: 249 LLSSYFDLVVDGMCIAGMAIGANKGFIYLRGEYRYLLDRLETRLAQRREQNLLGRNILGR 308

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G+  DI +H GAGAYICGEE+AL+ESLEGK G+PR++PPFP   G  G PTTVNNVE++A
Sbjct: 309 GFSFDIEIHLGAGAYICGEESALIESLEGKPGKPRIRPPFPVTNGYRGQPTTVNNVETLA 368

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   I  RG  W+   G   + GTKL S+SG V  P   E    +T  E++E        
Sbjct: 369 LAALIAVRGGDWFHAIGTPASTGTKLLSVSGDVERPGIYEFPFGVTVAEVLEAAGA---- 424

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
              +  AV   G++  CL A +  G  + ++ +   GS      ++V DRS D+ +    
Sbjct: 425 --RDTQAVTSAGAAGHCLAADE-FGRRIAFEDVATGGS------IMVFDRSRDMFEVAHN 475

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
            + F+ HESCG CTPCR GT    R++++L        ++D + ++ + ++G + C LG+
Sbjct: 476 FAHFFAHESCGFCTPCRVGTAVNARLLDKLAADHGSPYDLDEIAKMHRLMQGASHCGLGN 535

Query: 396 AAAWPIQGLIKNFRPLIEERID 417
            A   I  ++  FRP  E R+ 
Sbjct: 536 TATIAIDDMLAKFRPAFERRLH 557


>gi|86140149|ref|ZP_01058711.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193]
 gi|85823086|gb|EAQ43299.1| formate dehydrogenase, beta subunit [Roseobacter sp. MED193]
          Length = 566

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 218/398 (54%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             ++ +   + G +  + ++   G  + +  +VK +GLRG GGAGF +G KW F+    +
Sbjct: 187 DYETFAAYEAEGGYATLKELRGGGNWEAVQEKVKEAGLRGLGGAGFPSGTKWGFVR--AN 244

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           + P YL VN DE EPGT KDR  +   PH  +EG ++A++A+ A  AFIY+R E+    E
Sbjct: 245 EGPRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLMAAWAVEAEKAFIYMRDEYPAVLE 304

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+  +     + ++           I +  GAGAYICGEE+A++ES+EGK+G+PR +PP
Sbjct: 305 ILRREITALEEAAIVEPGY-------IALRRGAGAYICGEESAMIESIEGKRGEPRHRPP 357

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           F A VG++G PT V+NVE++  V  I R G    +   +   +G + +S+SG V  P   
Sbjct: 358 FVAQVGIFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVH 417

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  ++IE  CGG+        A  PGG S   LPA  M    +D+D L+  GS 
Sbjct: 418 LLPAGSTITDIIE-ACGGM-LEGHAFKAYQPGGPSSGLLPAS-MNDVPLDFDTLQPHGSF 474

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M        +K +
Sbjct: 475 IGSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------SEKKWD 528

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            DLL E+S  +   +IC LG AA  PI+  IK+F   +
Sbjct: 529 QDLLEELSTAMVDTSICGLGQAAPNPIRLTIKHFPEEV 566


>gi|298369169|ref|ZP_06980487.1| NADH dehydrogenase I, F subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283172|gb|EFI24659.1| NADH dehydrogenase I, F subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 417

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 134/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +      
Sbjct: 16  GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQDANLCGMGGAGFPTWRKWEAAVAAQSKH 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +YV         +
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAIMYVNPHQTESIAA 134

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 135 IVPAIEQWKKSDLFIRIENYLGKPLDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 195 FPAESGVEGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  H GG+        AV  GG S   L    +    +D+  ++E  S 
Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCGQC PC+ GT  + R++ R+  GI    +
Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410


>gi|254503842|ref|ZP_05115993.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
 gi|222439913|gb|EEE46592.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Labrenzia alexandrii DFL-11]
          Length = 626

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 148/383 (38%), Positives = 208/383 (54%), Gaps = 18/383 (4%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             + K +      II+ ++ SGLRG GGAGF+TG KW F     ++R  +++ NADE EP
Sbjct: 215 AGLSKAVSITSSQIISMIEESGLRGCGGAGFTTGRKWRFAAAERTERS-FVICNADEGEP 273

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR ++   PH LIEG  IA+ A+GA    +Y+RGE++  RE L+  ++E    GLL
Sbjct: 274 GTFKDRVLLTERPHLLIEGMTIAARAVGAKEGILYLRGEYVYLRELLEQVLEERRRRGLL 333

Query: 150 GSNSKLG---YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           G  + LG   +D DI +  GAGAYICGEE AL+ S EG  G+P+ +PPFP N G  G PT
Sbjct: 334 GK-AILGTKRFDFDIRIQMGAGAYICGEEGALISSCEGLPGEPKTRPPFPVNRGYLGYPT 392

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            VNNVE+      IL +GA W+   G E + GTKLFS+ G    P   E     +  EL+
Sbjct: 393 VVNNVETFCHAARILDQGAKWFHDIGTEGSHGTKLFSVCGDCLNPGIYELPYGHSVWELL 452

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           E   G       +  AV  GG S   +         + +D L   G      A+IV +  
Sbjct: 453 EMVGG------QDAAAVQVGGPSGAMIARDSFH-RKLTFDDLATGG------AIIVFNGQ 499

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
            +I++ +     F+ HESCG CTPCR G  ++ + +E+  KG+A   +ID L ++S  I 
Sbjct: 500 RNILEIVDYYMSFFVHESCGYCTPCRVGNVFLQKAIEKFRKGLANPEDIDYLKDLSGTII 559

Query: 387 GRTICALGDAAAWPIQGLIKNFR 409
             + C LG  +  P+   + NF 
Sbjct: 560 ETSRCGLGMTSPNPVLSTLANFP 582


>gi|309378256|emb|CBX23118.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 417

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +      
Sbjct: 16  GADLTAWRKVGGGEGLLAALA-DPQSIVSKLQKANLCGMGGAGFPTWRKWEAAVAAQSKH 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +YV         S
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIAS 134

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  H GG+        AV  GG S   L    +    +D+  ++E  S 
Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCGQC PC+ GT  + R++ R+  GI    +
Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410


>gi|296314193|ref|ZP_06864134.1| protein HymB [Neisseria polysaccharea ATCC 43768]
 gi|296839149|gb|EFH23087.1| protein HymB [Neisseria polysaccharea ATCC 43768]
          Length = 417

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 134/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +      
Sbjct: 16  GADLTAWRKVGGGEGLLAALA-DPQSIVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKH 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +YV         S
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIAS 134

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  + GG+        AV  GG S   L    +    +D+  ++E  S 
Sbjct: 255 ELPMGTTLQSLIFDYGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCGQC PC+ GT  + R++ R+  GI    +
Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410


>gi|330882979|gb|EGH17128.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 334

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 139/336 (41%), Positives = 197/336 (58%), Gaps = 6/336 (1%)

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            TG+KW  MPK  S    YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+ 
Sbjct: 1   PTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYR 60

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALL 179
            +I++RGE++   + L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+
Sbjct: 61  GYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALI 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--R 237
            SLEG++  PR KPPFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   
Sbjct: 121 NSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDH 180

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL   SG V  P   E    +   EL E + GG+R G+  L    PGG+    L    
Sbjct: 181 GTKLMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEH 239

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           +  A M   G+ ++G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W
Sbjct: 240 L-DAQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPW 298

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICA 392
            ++++  + KG  Q  +I+ L  +   +  G+T CA
Sbjct: 299 SVKMLRAIEKGQGQPGDIETLLGLVNFLGPGKTFCA 334


>gi|261400880|ref|ZP_05987005.1| protein HymB [Neisseria lactamica ATCC 23970]
 gi|269209226|gb|EEZ75681.1| protein HymB [Neisseria lactamica ATCC 23970]
          Length = 417

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +      
Sbjct: 16  GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKH 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +YV         S
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIAS 134

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 195 FPAESGVEGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  H GG+        AV  GG S   L    +    +D+  ++E  S 
Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCGQC PC+ GT  + R++ R+  GI    +
Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410


>gi|225076392|ref|ZP_03719591.1| hypothetical protein NEIFLAOT_01437 [Neisseria flavescens
           NRL30031/H210]
 gi|224952298|gb|EEG33507.1| hypothetical protein NEIFLAOT_01437 [Neisseria flavescens
           NRL30031/H210]
          Length = 417

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 135/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +      
Sbjct: 16  GADLTAWRKVGGGEGLLAALA-DPQSIVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKH 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +YV         S
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAVLYVNPHQTDSIAS 134

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  H GG+        AV  GG S   L    +    +D+  ++E  S 
Sbjct: 255 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTVKDL-DVPLDFVSVRERKSS 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCGQC PC+ GT  + R++ R+  GI    +
Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSMRTFPEEY 410


>gi|257092625|ref|YP_003166266.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045149|gb|ACV34337.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 608

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 137/393 (34%), Positives = 204/393 (51%), Gaps = 18/393 (4%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNADE 86
           + +   + +G + ++ E+K S LRGRGGAGF+T +KW    +     +    Y+V NADE
Sbjct: 188 EALRAAIARGPEAMLAEMKVSNLRGRGGAGFTTYIKWESARRATCRHAPPARYVVCNADE 247

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EPGT KDR ++      + +G  +A   IGA    +Y+RGE+     +LQ  ++    +
Sbjct: 248 GEPGTFKDRVLLTSHADLVFDGMSVAGVTIGAEKGLLYLRGEYAYLLPALQENLERRRRN 307

Query: 147 GLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           GLLG     +     DI +H GAGAY+CGEETALLESLEGK+G PR++PPFP + G  G 
Sbjct: 308 GLLGPALCGRADLAFDIDIHLGAGAYVCGEETALLESLEGKRGVPRIRPPFPVHAGYRGQ 367

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT VNNVE++     I  RG +W++G G + + GTKL SISG V  P   E    +   +
Sbjct: 368 PTVVNNVETLCKAALIAVRGGAWFAGLGTKQSTGTKLLSISGDVESPGIYEYPFGVAVSQ 427

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++     G      N  AV   G S  CL       A+ ++             A +V  
Sbjct: 428 VLNDCGAG------NAQAVQVSGPSGSCL-------AMHEFSRRIAFEDVPTAGAFMVFG 474

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
              D+ +     + F+ HESCG CTPCR GT  +   M+++  G   + +I  ++++ + 
Sbjct: 475 AHRDMFEVARNFAHFFAHESCGFCTPCRVGTSLVANCMDKIANGRGSQYDISEIFKIHRL 534

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +   + C LG  A  P+   +  FRP  E R+ 
Sbjct: 535 LHAASHCGLGQTACNPLFDTLNKFRPAYERRLR 567


>gi|209516242|ref|ZP_03265100.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160]
 gi|209503353|gb|EEA03351.1| NADH dehydrogenase (quinone) [Burkholderia sp. H160]
          Length = 414

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 144/399 (36%), Positives = 207/399 (51%), Gaps = 5/399 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           G  L    + G  + + K LE   + II E+  + LRG GGAGF    KW+ +     D 
Sbjct: 16  GADLDAWFACGGGEGLAKALE-DPEAIIAEIALADLRGMGGAGFPAHRKWAPVA-AAPDG 73

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y++ N +E EPGT KDR ++ H PH +IEG +IA+ A  A+   +YV           
Sbjct: 74  DKYVICNGNEDEPGTFKDRFLLEHTPHQVIEGALIAALATRANHVVLYVNPHQTASLAVT 133

Query: 137 QAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + AV +        +  S +G  V + V   +G YI GEETA++ S+EG    PR KPPF
Sbjct: 134 REAVKQWSGHAQFAAIESWIGGPVSLGVVPSSGLYIGGEETAVIASVEGGFPFPRRKPPF 193

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G++G PT VNN+E++A VP ILR GA WY   G  +  GTKL+S+SG V  P   E
Sbjct: 194 PAEHGVHGAPTIVNNIETLAHVPGILRHGAQWYRDLGVGDAAGTKLYSLSGDVLRPGLYE 253

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  + + L+ +H GG+        AV  GG S   L    +    +D+D +++  S L
Sbjct: 254 LPMGTSLETLVFQHGGGM-LQGKEFKAVFTGGPSNTLLTKRDL-DVALDFDSVRQRRSRL 311

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+IV+   T I++ +     F+   SCGQC PC+ GT  MMR++ RL  G   + ++
Sbjct: 312 GTGAMIVVSEGTSIVRKVADYVNFFAQGSCGQCPPCKGGTFQMMRLLNRLDTGRGVRADL 371

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           + L  +   + G   C L D A   ++  I  FR   E 
Sbjct: 372 EALENLCTVLPGSGRCGLIDGAVTVVESSINQFRAEYEA 410


>gi|254476787|ref|ZP_05090173.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11]
 gi|214031030|gb|EEB71865.1| formate dehydrogenase, beta subunit [Ruegeria sp. R11]
          Length = 576

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 221/404 (54%), Gaps = 19/404 (4%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSF 68
           T+ +    ++ +   + G +  +  +   G  + +  +VK +GLRG GGAGF +G KW F
Sbjct: 191 THAHVPDYETFAAYEADGGYATLKDLRANGDWEAVQAKVKEAGLRGLGGAGFPSGTKWGF 250

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           +    ++ P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  AFIY+R E
Sbjct: 251 VR--ANEGPRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDE 308

Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +    E L+  +     +G++ +         I +  GAGAYICGEE+A++ES+EGK+G+
Sbjct: 309 YPAVLEILRREIKALEDAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGE 361

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR +PPF A VG++G PT V+NVE++  V  I R G    +   +   +G + +S+SG V
Sbjct: 362 PRHRPPFVAQVGIFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRV 421

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P         T  ++IE  CGG+        A  PGG S   LPA  M    +D+D L
Sbjct: 422 KNPGVHLLPAGSTITDIIE-ACGGM-LEGHTFKAYQPGGPSSGLLPAS-MHDVPLDFDTL 478

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
           +  G+ +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M      
Sbjct: 479 QPHGTFIGSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------ 532

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +K +  LL E+S  +   +IC LG AA  PI+  +K+F   +
Sbjct: 533 SEKKWDQGLLEELSTAMVDASICGLGQAAPNPIRLTMKHFPEEV 576


>gi|163746082|ref|ZP_02153441.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45]
 gi|161380827|gb|EDQ05237.1| formate dehydrogenase, beta subunit [Oceanibulbus indolifex HEL-45]
          Length = 570

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 134/398 (33%), Positives = 206/398 (51%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             +     M+ G ++ +  +   G    +  ++  +GLRG GGAGF +G KW F+     
Sbjct: 191 DYEPYQSYMNTGGYEALLSLRAGGDWGAVQEQLLEAGLRGFGGAGFPSGKKWGFVRANPG 250

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   F+Y+R E+    E
Sbjct: 251 --PRYLAVNGDEGEPGTFKDRWYLERTPHLFLEGMLIAAWAVEAEKVFLYMRDEYPAVLE 308

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+  +     +G++           + +  GAGAYICGEE+A++ES+EGK+G PR +PP
Sbjct: 309 ILRREIAALENAGVIAPGY-------VDLRRGAGAYICGEESAMIESIEGKRGLPRHRPP 361

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           + A VG++G PT V+N+E++  +  I R G    +   +   +G + +S+SG V  P   
Sbjct: 362 YVAQVGVFGRPTLVHNIETLHWIARICREGPQVLNATEKNGRKGLRSYSVSGRVAEPGMY 421

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  ++      G         A  PGG S   LPA  M    +D+D L+  GS 
Sbjct: 422 VLPAGSTITDI--TAAAGGMAEGHVFKAYQPGGPSSGLLPAS-MNDLPLDFDTLQPHGSF 478

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M         + +
Sbjct: 479 IGSAAVVVLSEHDSARAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QEDRWD 532

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             LL E+S  +   +IC LG AA  PI+ ++K+F   I
Sbjct: 533 QGLLEELSTAMVDASICGLGQAAPNPIRLVMKHFPDEI 570


>gi|91788666|ref|YP_549618.1| NADH dehydrogenase (quinone) [Polaromonas sp. JS666]
 gi|91697891|gb|ABE44720.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Polaromonas sp. JS666]
          Length = 566

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 148/396 (37%), Positives = 218/396 (55%), Gaps = 18/396 (4%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRD--WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             S   + G +  + + +   RD   ++  ++ SGLRG GGAGF  G KW  +       
Sbjct: 186 DFSSYRAAGGYALLAQCVSGDRDVESVLKTMEDSGLRGLGGAGFPAGRKWRIVRAEAG-- 243

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P  + VN DE EPGT KDR  +  +PH  +EG +IA++A+G    +IY+R E+   R  L
Sbjct: 244 PRLMAVNIDEGEPGTFKDRVYLERDPHRFLEGMLIAAWAVGIEKIYIYLRDEYHGCRAML 303

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +  +D+   +  +           I +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ 
Sbjct: 304 ETELDKLRLAPPMAG------MPQIELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYV 357

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VGL+G PT  +N E++  V  IL +G +W++  GR   +G + FS+SG V  P     
Sbjct: 358 AQVGLFGRPTLEHNFETLFWVREILEKGGAWFTSHGRNGRKGLRSFSVSGRVKSPGVKLA 417

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              IT  ELI++HCGG+        A +PGG+S   LPA  M    +D+D L+  G  +G
Sbjct: 418 PAGITIQELIDEHCGGM-QDGHTFYAYLPGGASGGILPA-TMNSIPLDFDTLQPYGCFIG 475

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAVIV+        A   +  F+ HESCGQCTPCR GT     +ME+       K ++ 
Sbjct: 476 SAAVIVLSDQDTATNAARNMMRFFHHESCGQCTPCRVGTAKAAHLMEK------PKWDLA 529

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL ++S  +   +IC LG AA  P+  ++K F   +
Sbjct: 530 LLADLSLVMRDASICGLGQAAPNPMDCVVKYFPHEL 565


>gi|302348415|ref|YP_003816053.1| NAD(P)+-dependent formate dehydrogenase, beta subunit [Acidilobus
           saccharovorans 345-15]
 gi|302328827|gb|ADL19022.1| NAD(P)+-dependent formate dehydrogenase, beta subunit [Acidilobus
           saccharovorans 345-15]
          Length = 481

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 129/395 (32%), Positives = 211/395 (53%), Gaps = 11/395 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           KSL D ++RG    +++ L   +  +I+EVK S LRGRGGA F TG+KW    +  +   
Sbjct: 96  KSLRDYLARGGMRGLERALSMPQAEVIDEVKRSQLRGRGGAYFPTGLKWESAMRQAAP-A 154

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++VN DE + G   DR +M  +P+ +IEG +IA++AIGA   + Y+R E+     +++
Sbjct: 155 KYVIVNGDEGDAGAYVDRFLMEWDPYLVIEGALIAAYAIGAGRVYFYIRREYPGAVAAVR 214

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            AV+E   +G L          ++ VH G G+Y+ GEETA++ ++ G++ +P  +PP+P 
Sbjct: 215 RAVEEVREAGYLSPPLPS----ELEVHVGRGSYVVGEETAMINAIMGRRPEPTPRPPYPT 270

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT VNNVE+++ VP I+  G   Y+  G   +RGTK+ S+S   + P   E  
Sbjct: 271 ERGLFGMPTVVNNVETLSSVPWIVENGGDAYAELGFSRSRGTKVLSLSSTFSRPGLYEVE 330

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             ++  E++    GG+R G   L  V+ GG     +P+ ++    +  + L+ +G+ LG 
Sbjct: 331 FGVSLREVVYDMGGGVRFG--KLKGVMIGGPLASLIPSEEL-DVKLGVEELRAIGASLGH 387

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             VI     T +   +  + +F   ESCG+C PCR GT  + R+     KG   + E   
Sbjct: 388 GNVIAFSDDTSVADMLHEVLLFASFESCGKCFPCRLGTAKLERM---FSKGYLTEEEARE 444

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
              ++  +   ++C  G AA   +   +K F   I
Sbjct: 445 AMSIANTMAVASLCGHGQAAGQAVAVTLKKFWKEI 479


>gi|149924755|ref|ZP_01913100.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1]
 gi|149814370|gb|EDM73967.1| putative NADH dehydrogenase I chain F [Plesiocystis pacifica SIR-1]
          Length = 503

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 162/386 (41%), Positives = 229/386 (59%), Gaps = 17/386 (4%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +   DK  ++G DWII ++K SGL+GRGGAGF   +KW  + +  ++   Y+VVNADE E
Sbjct: 134 YAAFDKARDEGPDWIIEQLKTSGLQGRGGAGFPAHIKWHAV-RTQAELTRYVVVNADEGE 192

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           PGT KDR+IM   PH +IEG  IA++  GA  AFIYVRGEF     +L+AA+ E      
Sbjct: 193 PGTFKDREIMLRRPHRMIEGMAIAAWVAGAAKAFIYVRGEFRDCIRALEAAIAEA----- 247

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
            G        +DI +  G GAYICGEETALLE++EGK+G PRLKPP+P   GL+G PT +
Sbjct: 248 -GERLDW---LDIEIVEGHGAYICGEETALLEAIEGKRGMPRLKPPYPTEKGLWGKPTLM 303

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           NNVE++A VP IL RG  W+   G+    G+KL+ ISGHV  P   E  + ++ DEL+E 
Sbjct: 304 NNVETLACVPEILSRGGEWFKALGKTE-AGSKLYCISGHVGRPGIYELPLGVSLDELVEA 362

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             G          A  PGG+S   LP   +RG  +D+ GL ++GS LG+A V+V++ + D
Sbjct: 363 AGG----YVGTPKAFSPGGASSGFLPMD-LRGEPLDFGGLAKLGSMLGSAGVVVLNDTVD 417

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
           +  A     +F++ ESCGQC PCR G     + +++ +        +  + EV+  ++  
Sbjct: 418 MAVAARWQQIFFEDESCGQCAPCRIGCRVQRQAIDKFLDAR-APESLGHVEEVAWEMDAG 476

Query: 389 TICALGDAAAWPIQGLIKNFRPLIEE 414
           +IC LG  A+ P+Q  +K F    + 
Sbjct: 477 SICGLGMVASLPLQSAMKYFGEEFDH 502


>gi|83312492|ref|YP_422756.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Magnetospirillum magneticum AMB-1]
 gi|82947333|dbj|BAE52197.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Magnetospirillum magneticum AMB-1]
          Length = 627

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 144/389 (37%), Positives = 211/389 (54%), Gaps = 19/389 (4%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPG 90
           K L K    +++ VK SGLRGRGGAGFSTG KW F            HY+V NADE EPG
Sbjct: 204 KAL-KSPQEVLDSVKESGLRGRGGAGFSTGQKWDFCRAAVGTGPHAAHYVVCNADEGEPG 262

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
           T KDR ++      + EG  ++ + IGA    +Y+RGE+    E L A +++  A+ LLG
Sbjct: 263 TFKDRVLLASYAGLVFEGMTVSGYVIGARKGIVYLRGEYRYLLEPLNAVLEKRRAAKLLG 322

Query: 151 SNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
            +   + G+D DI VH GAGAY+CGEETALLESLEGK+G PR +PPFP   G  G PT V
Sbjct: 323 KSILGRTGFDFDIEVHLGAGAYVCGEETALLESLEGKRGVPRKRPPFPVTAGYLGQPTAV 382

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           NNVE++A    I  +GA+WY   G   + GTK+ SISG    P   E    +   +++  
Sbjct: 383 NNVETLASAALIAAKGAAWYKSIGTPKSAGTKILSISGDCERPGIYEYPYGVKVSQVLAD 442

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                     +  A    G+S  C+   +  G  + ++ +   GS +      + D + D
Sbjct: 443 CGA------RDTQACQIAGASGLCVAPNE-FGRRIAFEDIPTGGSFM------IFDNTRD 489

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
           + +     + F+ HESCG CTPCR GT  +   M+++ +G   + +I+ ++ V + ++  
Sbjct: 490 MFQVARNFAHFFVHESCGFCTPCRVGTTLLANAMDKIDEGHGGEYDINDIWRVIRTLKTA 549

Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERID 417
           + C LG  A   +   ++ FRP  E R++
Sbjct: 550 SHCGLGQTAGNAVADTLQKFRPSYELRLN 578


>gi|163743705|ref|ZP_02151080.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161383072|gb|EDQ07466.1| formate dehydrogenase, beta subunit [Phaeobacter gallaeciensis
           2.10]
          Length = 576

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 144/396 (36%), Positives = 217/396 (54%), Gaps = 19/396 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           ++ +   + G +  +  +   G  +    +VK +GLRG GGAGF +G KW F+    ++ 
Sbjct: 199 ETFAAYEADGGYATLKDLRANGDWEAAQAKVKEAGLRGLGGAGFPSGTKWGFVR--ANEG 256

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  AFIY+R E+    E L
Sbjct: 257 PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEIL 316

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +  +     +G++ +         I +  GAGAYICGEE+A++ES+EGK+G+PR +PPF 
Sbjct: 317 RREIAALEEAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFV 369

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VG++G PT V+NVE++  V  + R G    +   +   +G + +S+SG V  P     
Sbjct: 370 AQVGIFGRPTLVHNVETLYWVCKVNREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLL 429

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++IE  CGG+        A  PGG S   LPA  M    +D+D L+  G+ +G
Sbjct: 430 PAGSTITDIIE-ACGGM-LDGHAFKAYQPGGPSSGLLPAS-MHDIPLDFDTLQPHGTFIG 486

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+V+        A   +  F++ ESCGQCTPCR G    +++M        +K +  
Sbjct: 487 SAAVVVLSDKDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------GEKKWDQG 540

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL E+S  +   +IC LG AA  PI+  IK+F   +
Sbjct: 541 LLEELSAAMVDTSICGLGQAAPNPIRLTIKHFPEEV 576


>gi|163736779|ref|ZP_02144197.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107]
 gi|161389383|gb|EDQ13734.1| NADH dehydrogenase (quinone) [Phaeobacter gallaeciensis BS107]
          Length = 576

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 144/396 (36%), Positives = 218/396 (55%), Gaps = 19/396 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           ++ +   + G +  +  +   G  + +  +VK +GLRG GGAGF +G KW F+    ++ 
Sbjct: 199 ETFAAYEADGGYATLKDLRANGDWEAVQAKVKEAGLRGLGGAGFPSGTKWGFVR--ANEG 256

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  AFIY+R E+    E L
Sbjct: 257 PRYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEIL 316

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +  +     +G++ +         I +  GAGAYICGEE+A++ES+EGK+G+PR +PPF 
Sbjct: 317 RREITALEEAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFV 369

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VG++G PT V+NVE++  V  + R G    +   +   +G + +S+SG V  P     
Sbjct: 370 AQVGIFGRPTLVHNVETLYWVCKVNREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLL 429

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++IE  CGG+        A  PGG S   LPA  M    +D+D L+  G+ +G
Sbjct: 430 PAGSTITDIIE-ACGGM-LDGHAFKAYQPGGPSSGLLPAS-MHDIPLDFDTLQPHGTFIG 486

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+V+        A   +  F++ ESCGQCTPCR G    +++M        +K +  
Sbjct: 487 SAAVVVLSDKDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------GEKKWDQG 540

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL E+S  +   +IC LG AA  PI+  IK+F   +
Sbjct: 541 LLEELSAAMVDTSICGLGQAAPNPIRLTIKHFPEEV 576


>gi|218510549|ref|ZP_03508427.1| formate dehydrogenase protein, beta subunit [Rhizobium etli Brasil
           5]
          Length = 368

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 124/353 (35%), Positives = 186/353 (52%), Gaps = 4/353 (1%)

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
               KW  +     +   Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA  
Sbjct: 9   PQASKWKTVLDAPGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGATK 67

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
            FIY R E+     ++  AV     +G+LG +    G   DI V  GAGAY+CGEETALL
Sbjct: 68  GFIYTRSEYPHAIAAMSEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETALL 127

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA++Y  FG   +RGT
Sbjct: 128 NSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAAFYRDFGMGRSRGT 187

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
               I+G+V Y    E +  ++  +++++  GG       + AV  GG      P   + 
Sbjct: 188 IPLQIAGNVRYGGLYETAFGLSLGDIVDRIGGGTA-TRRPVKAVQVGGPLGAYFPRA-LF 245

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
               DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   +
Sbjct: 246 DTPFDYEAFAARDGLIGHAGIVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGV 305

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
              +++ +GI  ++  +LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 306 ETADKIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 358


>gi|261381111|ref|ZP_05985684.1| protein HymB [Neisseria subflava NJ9703]
 gi|284795911|gb|EFC51258.1| protein HymB [Neisseria subflava NJ9703]
          Length = 417

 Score =  356 bits (914), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 133/398 (33%), Positives = 199/398 (50%), Gaps = 5/398 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +     +
Sbjct: 16  GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQEANLCGMGGAGFPTWRKWEAAVAAQSKN 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +Y+         S
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACHANKAILYINPHQTESIAS 134

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 135 ITPAIEQWKNSDLFIRIENYLGKPLDLQLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 194

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 195 FPAESGVNGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 254

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  H  G+        AV  GG S   L A  +    +D+  ++E  S 
Sbjct: 255 ELPMGTTLKSLIFDHGDGM-LEGRTFKAVFTGGPSNTLLTAKDL-DVPLDFVSVRERKSS 312

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCG C PC+ GT  + R++ R+  GI    +
Sbjct: 313 LGTGAMIVISEGTSVVRKVSEYVEFFAANSCGHCPPCKGGTFQLSRLLNRVDTGIGTPDD 372

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 373 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 410


>gi|312144096|ref|YP_003995542.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
 gi|311904747|gb|ADQ15188.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
          Length = 410

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 152/400 (38%), Positives = 234/400 (58%), Gaps = 7/400 (1%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           L+G  L D +   H++++   L   R+ II +VK S L+GRGGAGF TG+KW F   + +
Sbjct: 8   LKGDRLDD-VDNYHFNSIKNALTMSREEIIQKVKDSELKGRGGAGFPTGLKWQFAKDIDN 66

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D   YLV N DE EPGT KDR ++   P  ++EG +IA++A+GA  A+IY+RGE+I   +
Sbjct: 67  D-NKYLVCNGDEGEPGTFKDRYLLEERPLKVLEGIMIAAYAVGAARAYIYIRGEYINAIK 125

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
             Q  +D+     +LG N     + +++ +  GAGAY+CG+ET+LL S+EGK+G+ R+KP
Sbjct: 126 KFQDVIDKAEKKNILGENIFSSDFSLELRLVRGAGAYVCGDETSLLNSIEGKRGRSRIKP 185

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P+P   GL+  PT VNNVES+     I    +  +S  G E +RGTKL S+SG VN P  
Sbjct: 186 PYPIQKGLFDNPTVVNNVESLCCAAEIFNEDSVEFSELGVEGSRGTKLISLSGDVNAPGL 245

Query: 254 VEESMS-ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            E   + +T +++I K   G+RG  + L  +IPGG S   + A  +      Y   +++G
Sbjct: 246 YEIEFAKVTLNDIIYKLGQGMRGS-ETLSFIIPGGVSTALIKAEDLE-LPYTYQTFEKLG 303

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+ AVI ++ S D++  +  +S FY  E+CG C PCREG   + R+++R  K    +
Sbjct: 304 SSLGSGAVIAVNESHDLLDLMLNVSRFYMDETCGTCFPCREGNRQINRILKR-YKDNESE 362

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            + +L+ ++   I+    C LG ++   I  +I N+    
Sbjct: 363 LDFELINDIGNTIKLAARCGLGQSSLSFISSVINNYSSKF 402


>gi|251770991|gb|EES51575.1| NADH dehydrogenase (quinone) [Leptospirillum ferrodiazotrophum]
          Length = 475

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 156/414 (37%), Positives = 228/414 (55%), Gaps = 6/414 (1%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGM 64
           DR+ TN       SL+     G +  + ++L       +I E+K SGLRGRGG+GF T +
Sbjct: 32  DRVLTNPAIFGDPSLASYERGGGYKGLRRVLSGLSPSDVIAEIKESGLRGRGGSGFPTAL 91

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KW  +         Y+V N  E EPG+ KD  ++   PH ++EG +IA FA+ A    ++
Sbjct: 92  KWEKVA-NHRVPVRYVVANGSEGEPGSHKDHYLISRSPHQILEGMIIACFAVSAKSGHLF 150

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           V+  F      L+ A +E  A+GLLG+N    G+ VDI +  G  AYI GEETALLE+LE
Sbjct: 151 VKESFPEGINILRKAREEALAAGLLGNNILGSGFSVDIEIFVGPAAYIAGEETALLEALE 210

Query: 184 GKKGQPRLKPPFP-ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           G+  +PR KPPF    +GLY  PT VNNVE+ A V  IL  G   +   G   + GT +F
Sbjct: 211 GRVPRPRPKPPFYPTEMGLYNKPTVVNNVETYAHVSRILAEGTVKFRERGTPKSPGTMIF 270

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+SG V  P  VE  +  + + L+  + GG     +       GG S   LPA ++    
Sbjct: 271 SVSGSVRRPVVVELPLGFSLERLLYDYAGG-PLPGETFQCFFTGGPSFGILPAREI-DTP 328

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           ++YD L+  G+GLG+A +IV+     I+      S FY+  SCGQC PCR GT  + + +
Sbjct: 329 LEYDALRAKGTGLGSAGIIVLGSKDSILATTAAFSEFYEKGSCGQCPPCRLGTESLHQTL 388

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           E L+ G   +  I+ L +V+K I+GR  C L  A+A+ ++ L+++F PL+ E +
Sbjct: 389 EGLMNGQNSEDGIERLLKVTKMIKGRGNCGLITASAFMVESLLEHFTPLLREEL 442


>gi|118474520|ref|YP_891366.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261885722|ref|ZP_06009761.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118413746|gb|ABK82166.1| NADH-quinone oxidoreductase chain f [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 406

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 177/406 (43%), Positives = 242/406 (59%), Gaps = 12/406 (2%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
            G  +  + + G + N++ IL+  R+ I+  V  SGLRG+GG G S G KW  M    SD
Sbjct: 12  NGYKIDVAKANGAYLNLENILKMDRNSIVEAVDKSGLRGKGGGGGSCGTKWKNMLAWESD 71

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              YLVVN DESEPGTCKD+ I+  +PH LIEG +I+S+A+GA  A++Y+RGE+ RE  +
Sbjct: 72  -KRYLVVNGDESEPGTCKDKYILNLDPHLLIEGIIISSYALGAKRAYVYIRGEYEREFIT 130

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L  A+ E   +  LG       D++IIV+ GAGAYICGE+TALLES+EGK+G PRLKP  
Sbjct: 131 LTNAIKEA--ANELG-------DLEIIVYKGAGAYICGEKTALLESIEGKRGHPRLKPHN 181

Query: 196 PANVG-LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            A    L+GC   VNNVE+IA +P I++ G   Y   G E + GT LF++SG VN PC  
Sbjct: 182 KAEPDFLFGCACVVNNVETIASIPFIVKNGWEAYRSVGTEKSPGTLLFAVSGCVNTPCVK 241

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E        + I    GG+    + L AVIPGGSS   L   ++  A +DY+ LKE  S 
Sbjct: 242 EMPFGTKMIDFINDFGGGVWKNRE-LKAVIPGGSSAAVLTKDEVLKATLDYESLKEFKSA 300

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT  ++V D +  + + +  L  FY  ESCGQCTPCREG GW +RV++++V+G    R+
Sbjct: 301 LGTGGMMVFDDTISMPEVLLNLLEFYTEESCGQCTPCREGCGWALRVVKKIVEGEGSLRD 360

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +D L ++S  ++G+TIC    A    I G I  F         +  
Sbjct: 361 LDTLKDISYMLDGKTICVFAPAVKDVIMGFITKFENEFVALCKETK 406


>gi|83955623|ref|ZP_00964203.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83839917|gb|EAP79093.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. NAS-14.1]
          Length = 570

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 140/398 (35%), Positives = 214/398 (53%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             ++    ++ G ++ + K+   G  + +   +  +GLRG GGAGF +G KW F+     
Sbjct: 191 DYEAFDAYVAGGGYEALKKLRRDGDWEDVQQNLLDAGLRGLGGAGFPSGKKWGFVRDNAG 250

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
             P Y+ VN DE EPGT KDR  +   PH  +EG +IA++A+ A   F+Y+R E+ +   
Sbjct: 251 --PRYMAVNGDEGEPGTFKDRWYLERVPHLFLEGMLIAAWAVEAEKVFLYMRDEYPQVLA 308

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+  +    A+G++ +         I +  GAGAYICGEE+A++ES+EGK+G PR +PP
Sbjct: 309 LLRTEIAALEAAGIVPAGY-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPP 361

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           + A VG++G PT V+NVE++  V  I R G    +   +   +G + +S+SG V  P   
Sbjct: 362 YVAQVGIFGRPTLVHNVETLHWVARICREGPEVLNSTEKNGRKGLRSYSVSGRVAKPGMY 421

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E     T  ++IE   G          A  PGG S   LPA  M    +D+D L+  GS 
Sbjct: 422 ELPAGSTITDVIEAAGGM--ANGHRFKAYQPGGPSSGLLPAA-MDDIPLDFDTLQPHGSF 478

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A + +
Sbjct: 479 IGSAAVVVLSDQDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADRWD 532

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             LL E+S  +   +IC LG AA  PI+ +IK+F   +
Sbjct: 533 KPLLEELSTAMVDASICGLGQAAPNPIRLVIKHFADEV 570


>gi|99078169|ref|YP_611427.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
 gi|99035307|gb|ABF62165.1| NADH dehydrogenase (quinone) [Ruegeria sp. TM1040]
          Length = 562

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 143/398 (35%), Positives = 218/398 (54%), Gaps = 19/398 (4%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
             ++     + G +  +  + E G  + +  +V ++GLRG GGAGF +G KW F+    +
Sbjct: 183 DYETYESYAAEGGYAVLQDLRESGDWEAVQEKVLSAGLRGLGGAGFPSGKKWGFVR--AN 240

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           + P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A  +FIY+R E+    E
Sbjct: 241 EGPRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAERSFIYMRDEYPAVLE 300

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+  +     +G++ +         I +  GAGAYICGEE+A++ES+EGK+G+PR +PP
Sbjct: 301 ILRREIRALEEAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPP 353

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           F A VG++G PT V+NVE++  +  I R G    +   +   +G + +S+SG V  P   
Sbjct: 354 FVAQVGIFGRPTLVHNVETLYWIAKINREGPECLNAVEKNGRKGLRSYSVSGRVQNPGVH 413

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
                 T  ++IE   G +        A  PGG S   LPA  M    +D+D L+  GS 
Sbjct: 414 LLPAGSTILDVIEAAGGMLE--GHLFKAYQPGGPSSGLLPA-HMNDIPLDFDTLQPHGSF 470

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A+K +
Sbjct: 471 IGSAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QAEKWD 524

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             LL E+S+ +   +IC LG AA  PI+  +K+F   I
Sbjct: 525 QSLLEELSQTMVDASICGLGQAAPNPIRLTMKHFPEEI 562


>gi|149374945|ref|ZP_01892718.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
 gi|149360834|gb|EDM49285.1| NADH dehydrogenase (quinone) [Marinobacter algicola DG893]
          Length = 571

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 158/407 (38%), Positives = 230/407 (56%), Gaps = 24/407 (5%)

Query: 13  YGLQGK-----SLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMK 65
             +  +      L+   S G +  +    E     + +  E++ +GLRG GGAGF T  K
Sbjct: 173 GQIHPEEIKWQRLAGYCSTGGYGLLTDCHEGRVSVESLAKELEHAGLRGLGGAGFPTYRK 232

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           W  +       P Y V+NADE EPGT KDR  +  EPH  +EG +++++A+ A   +IY+
Sbjct: 233 WQAVRAEPG--PRYAVINADEGEPGTFKDRYFLEREPHVFLEGALVSAWAVEAQALYIYL 290

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
           R E+      L+ AV E  A+G++           +I+  GAGAYICGEE+AL+ESLEGK
Sbjct: 291 RDEYPGLHGVLKNAVAELEAAGIVEPGF-------VILRRGAGAYICGEESALIESLEGK 343

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
            G+PR +PPF A  GL+G PT VNNVE++  +P I  +GA W++  GR   +G + FS+S
Sbjct: 344 PGKPRHRPPFVAQKGLFGQPTLVNNVETVYWIPRIHAQGAEWFASQGRHGRKGLRSFSVS 403

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P        IT  ELI+++CGG+      LLA +PGG+S   LPA +     +D+
Sbjct: 404 GRVATPGVHLAPAGITLSELIDEYCGGMA-EGHRLLAYLPGGASGGILPASK-ADIPLDF 461

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L+E G  +G+AAVIV+    D+  A   L  F+  ESCGQCTPCR GT  M+ ++ER 
Sbjct: 462 DTLQEHGCFIGSAAVIVLSDQDDLQAAASNLLGFFADESCGQCTPCRVGTEKMLTLLER- 520

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
                   + D L +++  +   +IC LG AA  P+  L+++FR  +
Sbjct: 521 -----STWDEDTLKQLAGVMADASICGLGQAAPNPVLSLLRDFRSEL 562


>gi|126740148|ref|ZP_01755837.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6]
 gi|126718603|gb|EBA15316.1| formate dehydrogenase, beta subunit [Roseobacter sp. SK209-2-6]
          Length = 566

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 142/396 (35%), Positives = 215/396 (54%), Gaps = 19/396 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           ++ +     G +  +  +   G  + +  +VK +GLRG GGAGF +G KW F+    ++ 
Sbjct: 189 ETFAAYEGEGGYATLKDLRANGDWEAVQAKVKEAGLRGLGGAGFPSGTKWGFVR--ANEG 246

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YL VN DE EPGT KDR  +   PH  +EG ++A++A+ A  AFIY+R E+    + L
Sbjct: 247 ARYLAVNGDEGEPGTFKDRYYLERTPHVFLEGMLMAAWAVEAEKAFIYMRDEYPAVLKIL 306

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
              +    A+G++           I +  GAGAYICGEE+A++ES+EGK+G+PR +PPF 
Sbjct: 307 ATEIKALEAAGIVEEGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFV 359

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VG++G PT V+NVE++  V  I R G    +   +   +G + +S+SG V  P     
Sbjct: 360 AQVGVFGRPTLVHNVETLYWVCKINREGPECLNSVEKNGRKGLRSYSVSGRVKNPGVHLL 419

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  ++IE  CGG+        A  PGG S   LPA  M    +D+D L+  G+ +G
Sbjct: 420 PAGSTITDIIE-ACGGM-LDGHAFKAYQPGGPSSGLLPAS-MNDVPLDFDTLQPHGTFIG 476

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+V+        A   +  F++ ESCGQCTPCR G    +++M        +K +  
Sbjct: 477 SAAVVVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------SEKKWDQG 530

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL E+S  +   +IC LG AA  PI+  +K+F   +
Sbjct: 531 LLEELSTAMVDASICGLGQAAPNPIRLTMKHFPDEV 566


>gi|119944968|ref|YP_942648.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37]
 gi|119863572|gb|ABM03049.1| hydrogenase, NADP-reducing subunit C [Psychromonas ingrahamii 37]
          Length = 588

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 129/390 (33%), Positives = 194/390 (49%), Gaps = 15/390 (3%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           + + K L       + E+  SGLRG GGAGF T  KW        D   Y+V NADE EP
Sbjct: 187 EAIKKALATAPHDSLAEIDKSGLRGCGGAGFKTAEKWKSCLLSD-DNQRYVVCNADEGEP 245

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR ++      LIEG  + ++ IGA   FIY+R E+    + L   +    A+ LL
Sbjct: 246 GTFKDRVLLNSYADLLIEGMTLCAYVIGAQKGFIYLRYEYQHLYKKLLETLQRRRAANLL 305

Query: 150 GSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           G++        DI +  GAG+Y+CGEE+ALLESLEG++  PR++PPFP   G    PT V
Sbjct: 306 GAHILNSELSFDIEIFMGAGSYVCGEESALLESLEGRRAIPRIRPPFPVTHGYLDKPTVV 365

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           NNVE+      I+ +GA  +S  G     G K+ SISG V      E  + +    ++  
Sbjct: 366 NNVETFCYAALIIEKGAENFSAQGLAGFTGCKILSISGDVEKTGIYEIPLGLPVKNVLNL 425

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                     ++ AV  GG S   +   +    I  +D L   GS +      V ++S D
Sbjct: 426 CGA------QSVQAVQVGGPSGTLITPAEFSRVI-SFDDLHTGGSFM------VFNQSRD 472

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
           I++     + F+  ESCG CTPCR GT  +  + +++  G   + ++D + +++  + G 
Sbjct: 473 ILENALNFTHFFMQESCGFCTPCRVGTKLIYDLADKVATGQGARLDLDSIKQLNHVMNGM 532

Query: 389 TICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + C LG  AA P+   ++ F     +R+  
Sbjct: 533 SHCGLGQRAAEPLLETLEKFPEYFVKRMTD 562


>gi|39937320|ref|NP_949596.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris CGA009]
 gi|39651178|emb|CAE29701.1| NADH-ubiquinone dehydrogenase chain F [Rhodopseudomonas palustris
           CGA009]
          Length = 428

 Score =  352 bits (904), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 161/416 (38%), Positives = 230/416 (55%), Gaps = 12/416 (2%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--- 70
            Q  SL+     G +  +   L++   + II  V+A+GLRGRGGAGF T  KW FM    
Sbjct: 14  RQPHSLAAWRGLGGYAALSLALKRHSPEAIIAMVEAAGLRGRGGAGFPTANKWRFMRTGS 73

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           +       YL VN DE+EPG+ KDR +M   PH LIEG  IA++AIGA    I VR E+ 
Sbjct: 74  ERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYAIGATEVIILVRDEYR 133

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
               +L  A+ E  A+GLLG +    G+D+ + VH  AG YI GEETAL+ ++EG++  P
Sbjct: 134 AAAAALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGEETALIAAIEGERPVP 193

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R +PP+PA  GL+G PTTVNNVE+++ VP+I+  GA WY      +  GTKL+ ISG V 
Sbjct: 194 RHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGAEWYRSLSFTDEGGTKLYGISGCVE 253

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P  +E  M  T  EL+ +  G        LLA  PGG +       ++    +D+   K
Sbjct: 254 RPQLIEAPMGSTARELLHRAGG--IRNGRGLLAFQPGGGATAFFEKAEL-DVPLDFTSTK 310

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
           + GS LGT A+IV+D     + AI R   FY  ESCG CTPCR+G  W+ ++++ L  G 
Sbjct: 311 KAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDGLPWVSKLLDALEAGK 370

Query: 370 AQKREIDLLYEVSKN--IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             + +I++L++        GR+ C L   A  P++  ++ F  +    +  +  C 
Sbjct: 371 GTQGDIEVLHQHVALSGPSGRSYCDLNTGALTPLRSGLERFGDIFTAHLQGF--CP 424


>gi|83942800|ref|ZP_00955261.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36]
 gi|83846893|gb|EAP84769.1| formate dehydrogenase, beta subunit [Sulfitobacter sp. EE-36]
          Length = 570

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 140/405 (34%), Positives = 218/405 (53%), Gaps = 19/405 (4%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +T+++    ++    ++ G ++ + K+   G  + +   +  +GLRG GGAGF +G KW 
Sbjct: 184 YTHVHVPDYEAFDAYVAGGGYEALKKLRRDGDWEDVQQNLLDAGLRGLGGAGFPSGKKWG 243

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F+       P Y+ VN DE EPGT KDR  +   PH  +EG +IA++A+ A   F+Y+R 
Sbjct: 244 FVRDNAG--PRYMAVNGDEGEPGTFKDRWYLERVPHLFLEGMLIAAWAVEAEKVFLYMRD 301

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           E+ +    L+  +    A+ ++ +         I +  GAGAYICGEE+A++ES+EGK+G
Sbjct: 302 EYPQVLALLRTEIAALEAACIVPAGY-------IDLRRGAGAYICGEESAMIESIEGKRG 354

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
            PR +PP+ A VG++G PT V+NVE++  V  I R G    +   +   +G + +S+SG 
Sbjct: 355 LPRHRPPYVAQVGIFGRPTLVHNVETLHWVARICREGPEVLNSTEKNGRKGLRSYSVSGR 414

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V  P   E     T  ++IE   G          A  PGG S   LPA  M    +D+D 
Sbjct: 415 VAKPGMYELPAGSTITDVIEAAGGM--ADGHRFKAYQPGGPSSGLLPAA-MDDIPLDFDT 471

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           L+  GS +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M     
Sbjct: 472 LQPHGSFIGSAAVVVLSDQDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM----- 526

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             A + +  LL E+S  +   +IC LG AA  PI+ +IK+F   +
Sbjct: 527 -QADRWDKPLLEELSTAMVDASICGLGQAAPNPIRLVIKHFADEV 570


>gi|89902039|ref|YP_524510.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118]
 gi|89346776|gb|ABD70979.1| NADH dehydrogenase (quinone) [Rhodoferax ferrireducens T118]
          Length = 591

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 147/406 (36%), Positives = 219/406 (53%), Gaps = 19/406 (4%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           FT  Y +   SL     R  +     ++  E+  + ++  ++ +GLRG GGAGF  G KW
Sbjct: 202 FTAHYAINLISLEAYRQRAGYALAAAVVNGEEPAEGVMAALEDAGLRGLGGAGFPAGRKW 261

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
             + +  +  P  + VN DE EPGT KDR  +  +PH  +EG +IA+   G    +IY+R
Sbjct: 262 RIVREQSA--PRVMAVNIDEGEPGTFKDRSYLERDPHRFLEGMLIAAQVAGTEACYIYLR 319

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
            E+   R+ L   ++   A               I +  GAGAYICGEE+A++ES+EGK+
Sbjct: 320 DEYHDARKMLTQEIEALQADPPCPLPY-------IELRRGAGAYICGEESAMIESIEGKR 372

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           GQPRL+PP+ A +GL+G PT V+N E++  V  I+ +G  W+S FGR   +G + FS+SG
Sbjct: 373 GQPRLRPPYVAQLGLFGKPTLVHNFETLYWVRDIVEKGPQWFSSFGRHGRQGLRSFSVSG 432

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            +  P        IT  ELI+++CGG+      L A +PGG+S   LPA  +    +D+D
Sbjct: 433 RIKLPGVKLAPAGITVQELIDEYCGGM-LDGHTLYAYLPGGASGGILPAS-LNHIPLDFD 490

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            L+  G  +G+AAVIV+ +      A      F+  ESCGQCTPCR GT   +R+ME   
Sbjct: 491 TLQPYGCFIGSAAVIVLSQFDRARDAALSAMRFFAAESCGQCTPCRVGTAKAVRLMEA-- 548

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
                  +   L +++  +   +IC LG AA  P++ + K F   I
Sbjct: 549 ----PVWDNATLEDLNAVMAEASICGLGQAAPNPVRCVQKYFPQEI 590


>gi|254456591|ref|ZP_05070020.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083593|gb|EDZ61019.1| NAD-dependent formate dehydrogenase beta subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 551

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 132/412 (32%), Positives = 206/412 (50%), Gaps = 8/412 (1%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGHW--DNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
            Q++ F+  +      + D  S      D ++K L+  +  II  +  S L GRGGAGF 
Sbjct: 137 KQEKFFSKSFATTSFLMDDKFSSTDQFKDQLNKFLKVDKKEIIKSLLDSNLTGRGGAGFP 196

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKW F  K   D   Y++ NADE + G   DR ++  +P  +I G VI    IG+   
Sbjct: 197 TGMKWDFCSKAKGD-KKYVLCNADEGDSGAFSDRYLLEDQPLKVIFGMVICGLVIGSDEG 255

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            +Y+RGE+ +  E++   ++E     LLG N     +  D+ +  G GAYICGEETAL+ 
Sbjct: 256 VLYIRGEYPKSIEAINGCINELKKLNLLGENILGTDFSFDLGICIGQGAYICGEETALIA 315

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EG++ +  ++PPFP   GLY  PT VNNVE++A    IL  G+  +S  G + + GTK
Sbjct: 316 SIEGRRAEVDVRPPFPVTEGLYKKPTVVNNVETLAAATGILINGSEKFSAIGNKKSAGTK 375

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L  +    N P   E  M  +  ++ E+  GG +   + + A   GG     +P  ++  
Sbjct: 376 LVCLDSFFNNPGVYEIDMGTSMKKIFEEIGGGYK---EAVKAFQIGGPLGGVVPLAEIDN 432

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+      G  LG A+V+ + +   + + I  L  F   ESCG+C P R G+     
Sbjct: 433 LNLDFQEFTAKGFMLGHASVVSIPKDFSMSEYIHHLFEFSAEESCGKCFPGRLGSYRGKE 492

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           + ++  K    K  + LL E+   ++   +CAL  A   PI  ++K F   +
Sbjct: 493 MFDQ-AKKKTAKIPLKLLNELLVTMQKGCLCALCGAIPTPIMNILKYFGDEM 543


>gi|259415017|ref|ZP_05738939.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter sp. TrichCH4B]
 gi|259348927|gb|EEW60681.1| tungsten-containing formate dehydrogenase beta subunit
           [Silicibacter sp. TrichCH4B]
          Length = 580

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 142/392 (36%), Positives = 216/392 (55%), Gaps = 19/392 (4%)

Query: 22  DSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
           +    G ++ +  +   G  + +   V ++GLRG GGAGF +G KW F+    ++ P YL
Sbjct: 207 EYAIAGGYEVLKNLRAHGDWEAVQETVLSAGLRGLGGAGFPSGKKWGFVR--ANEGPRYL 264

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
            VN DE EPGT KDR  +   PH  +EG +IA++A+ A  AFIY+R E+    E L+  +
Sbjct: 265 AVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAEKAFIYMRDEYPAVLEILRREI 324

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                +G++ +         I +  GAGAYICGEE+A++ES+EGK+G+PR +PPF A VG
Sbjct: 325 RALEEAGIVEAGY-------IDLRRGAGAYICGEESAMIESIEGKRGEPRHRPPFVAQVG 377

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           ++G PT V+NVE++  +  I R G    +   +   +G + +S+SG V  P         
Sbjct: 378 IFGRPTLVHNVETLYWIAKINREGPECLNTVEKNGRKGLRSYSVSGRVKNPGVHLLPAGS 437

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
           T  ++IE   G +     +  A  PGG S   LPA  M    +D+D L+  GS +G+AAV
Sbjct: 438 TILDVIEAAGGML--DGHSFKAYQPGGPSSGLLPA-HMNDIPLDFDTLQPHGSFIGSAAV 494

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
           +V+        A   +  F++ ESCGQCTPCR G    +++M       A+K +  LL E
Sbjct: 495 VVLSDQDSARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QAEKWDQSLLEE 548

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +S+ +   +IC LG AA  PI+  +K+F   +
Sbjct: 549 LSQTMVDASICGLGQAAPNPIRLTMKHFPEEV 580


>gi|82702794|ref|YP_412360.1| hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196]
 gi|82410859|gb|ABB74968.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Nitrosospira multiformis ATCC 25196]
          Length = 598

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 128/389 (32%), Positives = 203/389 (52%), Gaps = 16/389 (4%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +   L +G D  + E+K S LRGRGGAG++T  KW+           Y+V NADE EP
Sbjct: 192 SAIRATLMRGADATLGELKLSRLRGRGGAGYATADKWTACRDSE-GTARYIVCNADEGEP 250

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR ++      + EG  + +  +G+   F+Y+RGE+    + L+  +     + LL
Sbjct: 251 GTFKDRVLLNRYADMVFEGMTVGARLLGSTKGFLYLRGEYQYLLKKLEEVLARRCEARLL 310

Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           G++   + G+D DI +H GAGAYICGEE+AL+ESLEG++G+PR +PP+PA  G    PT 
Sbjct: 311 GTDILGEPGFDFDIEIHLGAGAYICGEESALIESLEGRRGKPRNRPPYPAQHGYLDQPTV 370

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE+ A    I   G  W+   G   + G+K+ SI+G    P   E    ++  E+++
Sbjct: 371 VNNVETFACSAMIAVHGGKWFGETGTWESSGSKILSIAGDCTLPGIYEYPFGVSVREILQ 430

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                     +   AV  GG S   +   +   +I  +D L   G      A  +  R  
Sbjct: 431 D------CAAEEAYAVQVGGPSGILVSWKEFERSI-SFDDLPTAG------AFTIFGRGR 477

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           DI++A+   + F+ HESCG CTPCR GT    ++++++  G     +++ L  +   +  
Sbjct: 478 DILEAVRNYAHFFAHESCGFCTPCRVGTQLQKKLVDKIADGHGTASDLEELKHLGHLMRT 537

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERI 416
            + C LG  A  P+  +++ F    E+++
Sbjct: 538 MSHCGLGHTAPNPVLDMLEKFPGAYEQKL 566


>gi|241760010|ref|ZP_04758108.1| NADH-quinone oxidoreductase subunit f [Neisseria flavescens SK114]
 gi|241319464|gb|EER55894.1| NADH-quinone oxidoreductase subunit f [Neisseria flavescens SK114]
          Length = 413

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 134/398 (33%), Positives = 199/398 (50%), Gaps = 9/398 (2%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSF-MPKVCSD 75
           G  L+     G  + +   L      I+++++ + L G GGAGF T  KW   +      
Sbjct: 16  GADLAAWRKVGGGEGLLAALA-DPQSIVSKLQDANLCGMGGAGFPTWHKWEAAVAAQSKH 74

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA+E EPGT KDR ++   PH +IEG +IA+ A  A+ A +Y          +
Sbjct: 75  GDKYVVCNANEDEPGTFKDRVLLAKTPHQVIEGVLIAAVACRANKAIMY----QTESIAA 130

Query: 136 LQAAVDECYASGLLGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +  A+++   S L     + LG  +D+ +   +G YI GEETA++  LEG    PR KPP
Sbjct: 131 IVPAIEQWKKSDLFIRIENYLGKPLDLKLVETSGRYIGGEETAVISWLEGGFPFPRRKPP 190

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
           FPA  G+ G PT +NN E+ A +P IL +GA WY   G  +  GTKL+S+SG V  P   
Sbjct: 191 FPAESGVAGEPTLINNTETFANIPQILAKGAEWYKSLGLGDAAGTKLYSLSGDVLNPGLY 250

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  M  T   LI  H GG+        AV  GG S   L A  +    +D+  ++E  S 
Sbjct: 251 ELPMGTTLQSLIFDHGGGM-LEGRTFKAVFTGGPSNTLLTAKDL-DVPLDFVSVRERKSS 308

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           LGT A+IV+   T +++ +     F+   SCGQC PC+ GT  + R++ R+  GI    +
Sbjct: 309 LGTGAMIVISEGTSVVRKVAEYVEFFASNSCGQCPPCKGGTFQLSRLLNRVDTGIGTSDD 368

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +  L  + + +     C L D A   +Q  ++ F    
Sbjct: 369 LRALQSLCQLLPRSGRCGLIDGAVTVLQSSLRTFPEEY 406


>gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana)
           tropicalis]
          Length = 1458

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 169/374 (45%), Positives = 214/374 (57%), Gaps = 25/374 (6%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILE------KGRDWIINEVKASGLRGRGGAGFS 61
           I+  L G    SL D  +RG +  + KIL         +D +I  VK SGLRGRGGAGF 
Sbjct: 29  IYAGLNGRN-WSLKDYEARGGYAALRKILGADGGAGMTQDQVIATVKESGLRGRGGAGFP 87

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFMP+       +LV N+DE EPGTCKDRDI+ + PH +IEG +I ++A+G    
Sbjct: 88  TGLKWSFMPRQFPG-QKHLVCNSDEGEPGTCKDRDILMYNPHIVIEGMIIGAYAMGISLG 146

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           + Y+ GE  +  E  +AA++E  A+G LG       +   +  HHG GAYICGEETALLE
Sbjct: 147 YNYIHGEIFQAYERFEAALEEARAAGYLGDQILGSHFSFQLHAHHGFGAYICGEETALLE 206

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SLEGKKGQPR KPPFPA+ GLYG PTT+NN E+ A VP I+R G   Y   G+ NN GTK
Sbjct: 207 SLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPWIIRNGGPAYLECGKPNNGGTK 266

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           +FS+SG V  P   E  +   F +L+E   G        L AVIPGGSS P LPA  M  
Sbjct: 267 IFSVSGDVERPGNYEIPLGTPFTKLLELAGG--VRKGRQLKAVIPGGSSSPVLPAHIMMD 324

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDI--------------IKAIWRLSVFYKHESCG 346
             MDYD + + GS LG+ A+IVMD S D+               KA   +  F  H+   
Sbjct: 325 CTMDYDAISKAGSMLGSGALIVMDDSRDMKVEVGEGSMVIHAAEKANVYIPHFCYHKKLS 384

Query: 347 QCTPCREGTGWMMR 360
               CR     + +
Sbjct: 385 VAASCRMCLVDVEK 398


>gi|169334685|ref|ZP_02861878.1| hypothetical protein ANASTE_01088 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257423|gb|EDS71389.1| hypothetical protein ANASTE_01088 [Anaerofustis stercorihominis DSM
           17244]
          Length = 416

 Score =  351 bits (900), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/412 (29%), Positives = 212/412 (51%), Gaps = 5/412 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           I  +     G ++ + + RG +  + K + +G +  + +V  SGL+GRGGA + TG K +
Sbjct: 7   ITKDYGTYDGFNIDEYIKRGGFKGLKKSILQGYEKTVKDVSDSGLQGRGGANYPTGRKLT 66

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
              +   +   Y++ NADE EPGT KD+ ++++  + +IEG +I++F  GA+  +IYVR 
Sbjct: 67  QAREAKGNGDRYILCNADEGEPGTFKDKYLLQNGIYKVIEGIIISAFCAGANKGYIYVRE 126

Query: 128 EFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           E+    + ++ A+ + Y  G LG +    G+D D+ +  G G+Y+CGE  A+ ES+EGK 
Sbjct: 127 EYTFMHKDIEFAIKQVYDKGFLGEDILSSGFDFDLSLFSGGGSYVCGEGFAMCESIEGKS 186

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
           G+PR KPP+    GL+  PT V NVE+++V+ T+++ G      +G E+  GTK+  +SG
Sbjct: 187 GRPRSKPPYVKECGLHNKPTLVINVETVSVIATMMQNGFKTVLKYGVEDCPGTKMVCVSG 246

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V +P   E     T          G   G      V  GG+S   +P  ++      Y 
Sbjct: 247 KVKHPGVYEVEFGTTVQN--IIKIAGGIKGGKKAKFVQIGGASGVIVPYEKL-NIPYTYS 303

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
           G+K++   +G+ A++V D    +I  +  +  F+ HE CG+C PCREG   + ++M+R  
Sbjct: 304 GMKKVKGNIGSGAIVVADEDDSVIDYLSVVEDFFFHECCGKCVPCREGNRQLKKIMDRFK 363

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
                  ++     +   +   ++C  G A   P      NF    +  + +
Sbjct: 364 IKQGTLTDLKNYVRIVNAL-DASLCGSGKAQIIPFISAYTNFSQEFKNALKR 414


>gi|192293100|ref|YP_001993705.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1]
 gi|192286849|gb|ACF03230.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris TIE-1]
          Length = 428

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 160/416 (38%), Positives = 230/416 (55%), Gaps = 12/416 (2%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMP--- 70
            Q  SL+     G +  +   L++   + II  V+A+GLRGRGGAGF T  KW FM    
Sbjct: 14  RQPHSLAAWRGLGGYAALSLALKRHSPEAIIAMVEAAGLRGRGGAGFPTANKWRFMRTGS 73

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           +       YL VN DE+EPG+ KDR +M   PH LIEG  IA++AIGA    I VR E+ 
Sbjct: 74  ERAGPGARYLCVNGDETEPGSFKDRLLMEALPHQLIEGATIAAYAIGATEVIILVRDEYR 133

Query: 131 RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
               +L  A+ E  A+GLLG +    G+D+ + VH  AG YI GEETAL+ ++EG++  P
Sbjct: 134 AAAAALSRAIAEAEAAGLLGRDILGSGFDLTMRVHASAGRYIVGEETALIAAIEGERPVP 193

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R +PP+PA  GL+G PTTVNNVE+++ VP+I+  GA WY      +  GTKL+ ISG V 
Sbjct: 194 RHRPPYPAVSGLWGRPTTVNNVETLSSVPSIIENGAEWYRSLSFTDEGGTKLYGISGCVE 253

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P  +E  +  T  EL+ +  G        LLA  PGG +       ++    +D+   K
Sbjct: 254 RPQLIEAPIGSTARELLHRAGG--IRNGRGLLAFQPGGGATAFFEKAEL-DVPLDFTSTK 310

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
           + GS LGT A+IV+D     + AI R   FY  ESCG CTPCR+G  W+ ++++ L  G 
Sbjct: 311 KAGSSLGTGALIVLDDRACPVAAIGRHMRFYARESCGLCTPCRDGLPWVSKLLDALEAGK 370

Query: 370 AQKREIDLLYEVSKN--IEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             + +I++L++        GR+ C L   A  P++  ++ F  +    +  +  C 
Sbjct: 371 GTQGDIEVLHQHVALSGPSGRSYCDLNTGALTPLRSGLERFGDIFTAHLQGF--CP 424


>gi|149914433|ref|ZP_01902964.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b]
 gi|149811952|gb|EDM71785.1| NADH dehydrogenase (quinone) [Roseobacter sp. AzwK-3b]
          Length = 574

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 145/404 (35%), Positives = 216/404 (53%), Gaps = 19/404 (4%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGMKWSF 68
           T+ +  Q ++       G +  + ++ E G    + + +  +GLRG GGAGF +G KW F
Sbjct: 189 THAHVPQYETYDAYAKAGGYQVLARLREGGDFETVQQDLLDAGLRGLGGAGFPSGRKWGF 248

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           +       P YL VN DE EPGT KDR  +  +PH  +EG +IA++A+ A   FIY+R E
Sbjct: 249 VRAEKG--PRYLAVNGDEGEPGTFKDRFYLERQPHVFLEGMLIAAWAVEAETCFIYMRDE 306

Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +    E L+  +     +G++           I +  GAGAYICGEE+A++ES+EGK+G 
Sbjct: 307 YPAVLEILRREIAALETAGVVAPGY-------IDLRRGAGAYICGEESAMIESIEGKRGL 359

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           PR +PPF A VG++  PT VNNVE++  V  +LR G    S   R   +G + +S+SG V
Sbjct: 360 PRHRPPFVAQVGIFDRPTLVNNVETLYWVTRVLREGKEILSDVERNGRKGLRSYSVSGRV 419

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
           N P         T  ++IE   G +     +  A  PGG S   LPA  M    +D+D L
Sbjct: 420 NKPGVHLLPAGSTITDIIEAAGGMLE--GHSFKAYQPGGPSSGLLPAS-MNDIPLDFDTL 476

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
           +  G+ +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M      
Sbjct: 477 QPHGTFIGSAAVVVLSDKDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------ 530

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            A + +  LL E+ + +   +IC LG AA  PI+  +K+F   I
Sbjct: 531 QADRWDQPLLEELCQAMGDASICGLGQAAPNPIRLTMKHFPDEI 574


>gi|254460680|ref|ZP_05074096.1| formate dehydrogenase, beta subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206677269|gb|EDZ41756.1| formate dehydrogenase, beta subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 561

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 139/396 (35%), Positives = 213/396 (53%), Gaps = 19/396 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           +  +   + G + ++ ++   G    + ++V  +GLRG GGAGF +G KW F+    ++ 
Sbjct: 184 EDFAAYEAAGGYTSLKELRANGDWAQVQDKVLDAGLRGLGGAGFPSGKKWGFVR--ANEG 241

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E+      L
Sbjct: 242 TRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEADTCFIYMRDEYPAVLHIL 301

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
              + +   +G++           I +  GAGAYICGEE+A++ES+EGK+G PR +PPF 
Sbjct: 302 AEEIAKLENAGIVEKGF-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFV 354

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A VG++  PT V+NVE++  V  I+R G    S   +   +G + +SISG VN P     
Sbjct: 355 AQVGIFNKPTLVHNVETLLWVTRIVREGPEVLSSIEKNGRKGLRSYSISGRVNDPGVHLL 414

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
               T  +LI+   G +     +  A  PGG S   LPA  +    MD+D L+ +G+ +G
Sbjct: 415 PAGSTIMDLIDAAGGMLE--GHSFKAYQPGGPSAGLLPAS-INDVPMDFDTLQPLGTFIG 471

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +AAV+++        A   +  F++ ESCGQCTPCR G    +++M       A K +  
Sbjct: 472 SAAVVILSDKDSARGAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADKWDQP 525

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           LL E+   +   +IC LG AA  PI+  +K+F   +
Sbjct: 526 LLEELCSAMGDASICGLGQAAPNPIRMTMKHFADEV 561


>gi|91780571|ref|YP_555778.1| putative NADH dehydrogenase subunit [Burkholderia xenovorans LB400]
 gi|91693231|gb|ABE36428.1| NAD(P)-dependent nickel-iron dehydrogenase flavin-containing
           subunit [Burkholderia xenovorans LB400]
          Length = 610

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 144/382 (37%), Positives = 204/382 (53%), Gaps = 16/382 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           +G   + +E+  S LRGRGGAGF TGMKW           HY+V NADE EPGT KDR +
Sbjct: 208 RGVPALFDEMNRSNLRGRGGAGFVTGMKWRLCRDAP-GTEHYIVCNADEGEPGTFKDRVL 266

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KL 155
           +   P  ++EG  I + AIGA    +Y+RGE+    E L   +     + LLG++     
Sbjct: 267 LTRHPDMVVEGMTIGALAIGARRGMLYLRGEYRYLLEPLLDVLQRRREAHLLGASILGHA 326

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G+D DI +H GAGAY+CGEE+AL+ESLEGK+G PR++PPFPA  G    PT V+NVE++ 
Sbjct: 327 GFDFDIDIHVGAGAYVCGEESALIESLEGKRGTPRIRPPFPAEHGYLQQPTVVDNVETLC 386

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
               +  +G +W+S  G   + GT L S+SG    P   E  +  + D ++E        
Sbjct: 387 AATHVALQGGAWWSAIGTPKSTGTSLHSVSGDCERPGIYEYPLGTSVDRILEDCGA---- 442

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
              +  AV  GG S  CL A +    I   D            A +V DRS D+ +    
Sbjct: 443 --RDTQAVQVGGPSGKCLSAIEFGHRIAFED-------VPSAGAFMVFDRSRDMFEVARN 493

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
            + F+  ESCG CTPCR GT  +++ M++L  G   + +++LL ++   + G T C LG 
Sbjct: 494 YAGFFAEESCGFCTPCRVGTALVVKSMDKLAAGRGSRHDVELLSDIDILMHGTTHCGLGG 553

Query: 396 AAAWPIQGLIKNFRPLIEERID 417
           +A   +   I  FRP  E R+ 
Sbjct: 554 SACNALHDTIVKFRPAYERRLK 575


>gi|220925074|ref|YP_002500376.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
 gi|219949681|gb|ACL60073.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 572

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 146/394 (37%), Positives = 215/394 (54%), Gaps = 23/394 (5%)

Query: 21  SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
               + G +  ++++   E   + ++  +    L+G GGAGF TG KW  +       P 
Sbjct: 191 DAYRAAGGYRTLERLRAGELTVEAVLAILDDGALKGLGGAGFPTGRKWRSVRGEPG--PR 248

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KD+  +  +PH  +EG +I +  + A   ++Y+R E+   R  L  
Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGTLIGAHVVEAAEIYLYIRDEYPIARAILAR 308

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            + +    G             I +  GAGAYICGEE++++ESLEGK+G PR KPPFP  
Sbjct: 309 ELAKLPPGGP-----------RIHLRRGAGAYICGEESSMIESLEGKRGLPRHKPPFPFQ 357

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+G PT +NNVE++  V  ++ +GA+W+   GR    G + +S+SG V  P       
Sbjct: 358 VGLFGRPTLINNVETLYWVRDLIEKGAAWWKSHGRNGRTGLRSYSVSGRVAAPGVKLAPA 417

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +T  ELI++ CGG+  G     A +PGG+S   LPA  M    +D+  L++ G  +G+A
Sbjct: 418 GLTIRELIDEFCGGMAAG-HRFAAYLPGGASGGILPAA-MDDIPLDFGTLEKYGCFIGSA 475

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AV+V+    D+  A   L  F++ ESCGQCTPCR GT    R+ME+ V       + DLL
Sbjct: 476 AVVVLSDQDDLRGAALNLMRFFEDESCGQCTPCRVGTRKARRLMEQGV------WDTDLL 529

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            E+S+ +   +IC LG AAA P+  LIK F  L 
Sbjct: 530 GELSQCMRDASICGLGQAAANPVTSLIKYFPDLF 563


>gi|114777303|ref|ZP_01452314.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Mariprofundus ferrooxydans PV-1]
 gi|114552448|gb|EAU54931.1| NAD-reducing hydrogenase diaphorase moiety largesubunit
           [Mariprofundus ferrooxydans PV-1]
          Length = 588

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 134/396 (33%), Positives = 212/396 (53%), Gaps = 16/396 (4%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +   +    + ++ E+  SGLRGRGGAGF TGMKW F  +   D  HY++ NADE EP
Sbjct: 182 SALSAAINMEPEALLAEITKSGLRGRGGAGFGTGMKWKFCREAKGD-AHYVICNADEGEP 240

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR ++    H + EG  +  + IGA   ++Y+R E+      L A +     +GLL
Sbjct: 241 GTFKDRILLTSHAHAVFEGMTLCGYVIGAQKGYLYLRAEYRYLLPELYAVLSRRQQAGLL 300

Query: 150 GSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           G+    + G+D DI +  GAGAYICGEE++L+ES+E K+G PR++PPFP   G  G PT 
Sbjct: 301 GAGILGQTGFDFDIDIIVGAGAYICGEESSLIESMEQKRGIPRVRPPFPVTSGFLGQPTV 360

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           VNNVE++A    I   G+ W++  G + + GTK+ S+SG    P   E    ++  ++++
Sbjct: 361 VNNVETLAAAAQIAIHGSEWFNTQGSDKSDGTKILSVSGDCTTPGIYEYPFGVSIQKILD 420

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                     +N+ A+  GG S   +   +     + ++ L   GS +      +     
Sbjct: 421 DCGA------ENVQAIQVGGPSGTLIGPDE-FERKLGFEDLATGGSFM------IFGAER 467

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
           D++  I   + F+ HESCG CTPCR GT  +   ++++V G   + ++D +Y ++  ++ 
Sbjct: 468 DLLAVISNFAHFFAHESCGFCTPCRVGTSLLKNGLDKIVSGHGTRYDMDEMYRMATLVKR 527

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           R+ C LG  AA P+   ++ F  L EER+       
Sbjct: 528 RSHCGLGQTAANPVLDALQRFPKLFEERLLHSEYAP 563


>gi|19112649|ref|NP_595857.1| iron sulfur cluster assembly protein (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74582910|sp|O94500|NDUV1_SCHPO RecName: Full=NADH-ubiquinone oxidoreductase 51 kDa subunit,
           mitochondrial; AltName: Full=Complex I-51kD;
           Short=CI-51kD; Flags: Precursor
 gi|4107329|emb|CAA22670.1| iron sulfur cluster assembly protein (predicted)
           [Schizosaccharomyces pombe]
          Length = 452

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 149/417 (35%), Positives = 236/417 (56%), Gaps = 9/417 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           R+F NL   + + + D+++ G ++N+ +IL+     II  V+ S LRGRG  GF TG K 
Sbjct: 33  RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92

Query: 67  SFMPKVCS-----DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
             + K  S          ++VNA E++ G+ KDR ++RHEPH +IEG +IA+ A+ A   
Sbjct: 93  LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASAC 152

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           ++++R ++  E   +Q  + + YA  LLG N       +++++H GAG+YI GEE+AL++
Sbjct: 153 YLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYITGEESALIQ 212

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           SL+G+   P +        GL+G PT V NVE+++ +P I+++G  ++   GR NNRGTK
Sbjct: 213 SLQGEFPVPDIPINNTITSGLFGLPTLVLNVETVSNLPAIIKKGPKFFISMGRPNNRGTK 272

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSISG VN P  +E  MSI   +LIE + GG+RGGW+ L+ + PGG     L   Q   
Sbjct: 273 LFSISGEVNEPNVIEACMSIPLKDLIENYAGGVRGGWNKLVGIFPGGPCSGILNKNQCEQ 332

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             MD+D LK + S LGT +VIV++    I +++   + FY   +C  C  CR+G   ++ 
Sbjct: 333 VTMDFDSLKALDSSLGTGSVIVLNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDVIE 392

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRT--ICALGDAAAWPIQGLIKNFRPLIEER 415
            ++ L  G A   ++  ++    N+   +   C  GD+    I  + +NF   I  R
Sbjct: 393 TLKGLKDGHAHLSQLKDMFS-KFNMPSSSKVFCGFGDSMRHQIHSIQRNFPDQITFR 448


>gi|220919682|ref|YP_002494985.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
 gi|219952102|gb|ACL62493.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium nodulans ORS 2060]
          Length = 567

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 146/394 (37%), Positives = 215/394 (54%), Gaps = 23/394 (5%)

Query: 21  SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
               + G +  ++++   E   + ++  +    L+G GGAGF TG KW  +       P 
Sbjct: 186 DAYRAAGGYRTLERLRAGELTVEAVLAILDDGALKGLGGAGFPTGRKWRSVRGEPG--PR 243

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KD+  +  +PH  +EG +I +  + A   ++Y+R E+   R  L  
Sbjct: 244 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGTLIGAHVVEAAEIYLYIRDEYPIARAILAR 303

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            + +    G             I +  GAGAYICGEE++++ESLEGK+G PR KPPFP  
Sbjct: 304 ELAKLPPGGP-----------RIHLRRGAGAYICGEESSMIESLEGKRGLPRHKPPFPFQ 352

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+G PT +NNVE++  V  ++ +GA+W+   GR    G + +S+SG V  P       
Sbjct: 353 VGLFGRPTLINNVETLYWVRDLIEKGAAWWKSHGRNGRTGLRSYSVSGRVAAPGVKLAPA 412

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +T  ELI++ CGG+  G     A +PGG+S   LPA  M    +D+  L++ G  +G+A
Sbjct: 413 GLTIRELIDEFCGGMAAG-HRFAAYLPGGASGGILPAA-MDDIPLDFGTLEKYGCFIGSA 470

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AV+V+    D+  A   L  F++ ESCGQCTPCR GT    R+ME+ V       + DLL
Sbjct: 471 AVVVLSDQDDLRGAALNLMRFFEDESCGQCTPCRVGTRKARRLMEQGV------WDTDLL 524

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            E+S+ +   +IC LG AAA P+  LIK F  L 
Sbjct: 525 GELSQCMRDASICGLGQAAANPVTSLIKYFPDLF 558


>gi|91975810|ref|YP_568469.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5]
 gi|91682266|gb|ABE38568.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris BisB5]
          Length = 428

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 161/385 (41%), Positives = 220/385 (57%), Gaps = 9/385 (2%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFM---PKVCSDRPHYLVVNADESEPGTCKDR 95
             + +I  V+A+GLRGRGGAGF T  KW FM            YL VN DE+EPG+ KDR
Sbjct: 39  SPEAVIAMVEAAGLRGRGGAGFPTANKWRFMRAGADKAGPGARYLCVNGDETEPGSFKDR 98

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-K 154
            +M   PH LIEG  IA++A GA    I VR E+     +L  A+ E   +G LG +   
Sbjct: 99  LLMEALPHQLIEGATIAAYATGATEVIILVRDEYRAAAAALTRAITEAEQAGWLGRDILG 158

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
            G+D+ + VH  AG YI GEETAL+ +LEG++  PR +PP+PA  GL+G PTTVNNVE++
Sbjct: 159 SGFDLTMRVHTSAGRYIVGEETALIAALEGERPVPRHRPPYPAVSGLWGRPTTVNNVETL 218

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           + VP+I+  GA WY G  R +  GTKL+ +SG V  P  +E  M  T  ELIE  CGGIR
Sbjct: 219 SAVPSIVENGADWYRGLSRSDEGGTKLYGVSGCVARPQLIEAPMGTTGRELIE-ICGGIR 277

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                L A  PGG +   L   ++    +D+   K+ GS LGT A+IV+D     + AI 
Sbjct: 278 -NGRALFAFQPGGGATAFLETAEL-DVPLDFTHTKKAGSSLGTGALIVLDDRACPVAAIG 335

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE--GRTICA 392
           R   FY  ESCG CTPCR+G  W+ ++++ L  G   K ++DLL+   +     GR+ C 
Sbjct: 336 RHMRFYARESCGLCTPCRDGLPWVAKLLDTLEAGRGAKADLDLLHSHVQLSAPSGRSYCD 395

Query: 393 LGDAAAWPIQGLIKNFRPLIEERID 417
           L   A  P++  ++ F  +    + 
Sbjct: 396 LNTGALTPLKSGLERFGDIFTAHLQ 420


>gi|297493964|gb|ADI40704.1| NADH dehydrogenase flavoprotein 1, 51kDa [Cynopterus sphinx]
 gi|297493966|gb|ADI40705.1| NADH dehydrogenase flavoprotein 1, 51kDa [Rousettus leschenaultii]
          Length = 275

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 171/261 (65%), Positives = 205/261 (78%), Gaps = 1/261 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVKASGLRGRGGAGF 
Sbjct: 15  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKASGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 75  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVLRGAGAYICGEETALIE 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 254

Query: 241 LFSISGHVNYPCTVEESMSIT 261
           LF+ISGHVN+PCTVEE MS+ 
Sbjct: 255 LFNISGHVNHPCTVEEEMSVP 275


>gi|297493960|gb|ADI40702.1| NADH dehydrogenase flavoprotein 1, 51kDa [Scotophilus kuhlii]
          Length = 275

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 168/261 (64%), Positives = 204/261 (78%), Gaps = 1/261 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 15  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 75  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIE 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG +W++ FGRE N GTK
Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVSVSPTICRRGGAWFASFGRERNSGTK 254

Query: 241 LFSISGHVNYPCTVEESMSIT 261
           LF+ISGHVN+PCTVEE MS+ 
Sbjct: 255 LFNISGHVNHPCTVEEEMSVP 275


>gi|90420730|ref|ZP_01228636.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335021|gb|EAS48782.1| formate dehydrogenase, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 559

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 149/405 (36%), Positives = 222/405 (54%), Gaps = 17/405 (4%)

Query: 10  TNLYGLQGKSLSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           T +      +L+D ++ G +  + KI +     D +I  ++++GLRG GGAGF  G KW 
Sbjct: 168 TTVRVPDYTNLADYLAAGGYKLLSKIRDGSLAVDTLIETMQSAGLRGLGGAGFPAGKKWG 227

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
           F+       P  + +N DE EPGT KDR  +  +PH  +EG +IA+ A+ A   + Y+R 
Sbjct: 228 FVRSYPG--PRLMTINGDEGEPGTFKDRYHLERDPHRTLEGALIAAHAVEAERIYFYMRD 285

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           E+      L+  +    A GL+           I +  GAGAYICGEE+A+LES+EGK+G
Sbjct: 286 EYPAVLHILRTEIAALEAGGLITPGF-------IELRRGAGAYICGEESAMLESIEGKRG 338

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
            PR +PP+ A VGL+G PT  +NVE++  +  I+  G  W++G G+    G + +S+SG 
Sbjct: 339 LPRHRPPYIAEVGLFGRPTLNHNVETLWWIRDIVDNGPEWFTGLGKPGFPGLRSWSVSGR 398

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V  P        +T  ELI++HCGG+  G     A +PGG+S   LPA      +     
Sbjct: 399 VREPGVKLAPAGVTVRELIDEHCGGMAAG-HAFKAYLPGGASGGVLPAALGDIPLDFGGE 457

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           L   G+ +G+ AV+V     DI +A   L  F++HESCGQCTPCREGTG ++ ++E   +
Sbjct: 458 LARQGAFVGSHAVVVFSDKDDIREATLNLLRFFEHESCGQCTPCREGTGKLVSLLE--SR 515

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           G   +  I  L  V   +   +IC LG AA  P+  L+ +FR  +
Sbjct: 516 GPIDETAIRDLETV---LRDASICGLGQAAPNPVNHLLTHFREEL 557


>gi|295112908|emb|CBL31545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Enterococcus sp. 7L76]
          Length = 363

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 135/364 (37%), Positives = 205/364 (56%), Gaps = 6/364 (1%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +++      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVAEYCKYDGFDGLKRAISLSDEEILNELDVAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEET 176
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYICGE +
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENS 179

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           ALL S+EGK G+PR+KPP  A+VGLY  PT VNNVES A VP ILR G   +   G  + 
Sbjct: 180 ALLNSIEGKTGRPRVKPPHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADG 239

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            GTKL  +SGH+      E ++    +E+I  +  GG      +L  +  GG S P    
Sbjct: 240 GGTKLICLSGHIKNRGLYEVNLGTPLEEIIYGEQYGGGSATGRSLKFIHFGGQSGPIGAV 299

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +R  +  Y+ L      +G+ A++VMD S +++  +  ++ F+ HESCG+CTPCR GT
Sbjct: 300 ATLRDCLYSYEDLWAHDLSVGSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGT 359

Query: 356 GWMM 359
             ++
Sbjct: 360 TRIL 363


>gi|254488368|ref|ZP_05101573.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101]
 gi|214045237|gb|EEB85875.1| formate dehydrogenase, beta subunit [Roseobacter sp. GAI101]
          Length = 569

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 136/402 (33%), Positives = 217/402 (53%), Gaps = 19/402 (4%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
           ++    +  +   + G ++ +  +   G  + + +++  +GLRG GGAGF +G KW F+ 
Sbjct: 186 VHVPDYEDFAAYSNDGGYETLKTLRATGDWEAVQDQLLEAGLRGLGGAGFPSGKKWGFVR 245

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
                 P Y+ VN DE EPGT KDR  +   PH  +EG +IA++A+ A   F+Y+R E+ 
Sbjct: 246 GNAG--PRYMAVNGDEGEPGTFKDRWYLERVPHHFLEGMLIAAWAVEADKVFLYMRDEYP 303

Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
           +    L+  +    A+G++           I +  GAGAYICGEE+A++ES+EGK+G PR
Sbjct: 304 QVLALLRTEIAALEAAGIVEPGY-------IDLRRGAGAYICGEESAMIESIEGKRGMPR 356

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
            +PP+ A VG++G PT V+NVE++  V  + R G    +   + + +G + +S+SG V  
Sbjct: 357 HRPPYVAQVGIFGRPTLVHNVETLHWVARVCREGPEVLNSTVKNDRKGLRSYSVSGRVAN 416

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P         T  ++I+   G          A  PGG S   LPA  M   +MD+D L+ 
Sbjct: 417 PGMYLLPAGSTITDIIDAAGGM--ADGHVFKAYQPGGPSSGLLPAS-MADVVMDFDTLQP 473

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            GS +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A
Sbjct: 474 HGSFIGSAAVVVLSEHDSAKAAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QA 527

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            + +  LL E+S+ +   +IC LG AA  PI+ ++K+F   +
Sbjct: 528 DRWDKPLLEELSQAMVDASICGLGQAAPNPIRLVMKHFPDEV 569


>gi|324521898|gb|ADY47951.1| NADH dehydrogenase [ubiquinone] flavoprotein 1 [Ascaris suum]
          Length = 323

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 173/269 (64%), Positives = 205/269 (76%), Gaps = 1/269 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L+D DRIFTNLYG     L  +++RG W    +I+ KG+DWII E+ ASGLRGRGGAGF 
Sbjct: 46  LSDDDRIFTNLYGRHDYRLKGALARGDWYKTKEIILKGQDWIIKEISASGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKW FM +    RP YLVVNADE EPGTCKDR+IMRH+PH LIEGC+IA  A+GA  A
Sbjct: 106 SGMKWGFMKRPYDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLIEGCLIAGVAMGARAA 165

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY RGEF  E   LQ A+ E Y +G LG +    GY  D+ VH GAGAYICGEETALLE
Sbjct: 166 YIYARGEFYNEACILQEAIHEAYKAGYLGKDCCGTGYSFDVFVHRGAGAYICGEETALLE 225

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA++GL+GCPTTV NVE++AV PTI RRG +W++ FGRE N GTK
Sbjct: 226 SIEGKQGKPRLKPPFPADIGLFGCPTTVTNVETVAVSPTICRRGGAWFASFGRERNHGTK 285

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKH 269
           LF ISGHV  PCTVEE MSI   +LIE+H
Sbjct: 286 LFCISGHVVNPCTVEEEMSIPLKDLIERH 314


>gi|124487823|gb|ABN11995.1| putative NADH dehydrogenase (ubiquinone) flavoprotein 1
           [Maconellicoccus hirsutus]
          Length = 266

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 174/258 (67%), Positives = 207/258 (80%)

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
           H GAGAYICGEETAL+ES+EGK+G+PRLKPPFPA+VGL+GCPTTV+NVE++AV PTI RR
Sbjct: 2   HRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGLFGCPTTVSNVETVAVSPTICRR 61

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
           G  W+  FGR  N GTKLF+ISGHVN PCTVEE MSI   ELIE+H GG+ GGWDNLLAV
Sbjct: 62  GGDWFVSFGRPRNSGTKLFNISGHVNTPCTVEEEMSIPLKELIERHAGGVIGGWDNLLAV 121

Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
           IPGGSS P +P       +MD+DGL    + LGTAAVIVM++ TD++KAI RL +FYKHE
Sbjct: 122 IPGGSSTPLIPKKVCEDVMMDFDGLVAAQTSLGTAAVIVMNKQTDVVKAIARLIMFYKHE 181

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403
           SCGQCTPCREG  WM ++M R V G  Q  EID+L+E+SK IEG TICALGD AAWP+QG
Sbjct: 182 SCGQCTPCREGINWMNKMMYRFVDGNGQTPEIDMLWELSKQIEGHTICALGDGAAWPVQG 241

Query: 404 LIKNFRPLIEERIDQYHR 421
           LI++FRP IE RI ++ +
Sbjct: 242 LIRHFRPEIERRISEFQK 259


>gi|89068003|ref|ZP_01155420.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
           HTCC2516]
 gi|89046242|gb|EAR52299.1| formate dehydrogenase, beta subunit [Oceanicola granulosus
           HTCC2516]
          Length = 561

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 139/391 (35%), Positives = 208/391 (53%), Gaps = 19/391 (4%)

Query: 23  SMSRGHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
             + G +  ++++ E G  + +   V A+GLRG GGAGF +G KW F+       P YL 
Sbjct: 189 YRAAGGYSALERLREGGDWEAVQETVLAAGLRGLGGAGFPSGRKWGFVRANPG--PRYLA 246

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
           VN DE EPGT KDR  +   PH  +EG +IA++A+ A   F+Y+R E+    E L+  + 
Sbjct: 247 VNGDEGEPGTFKDRHYLERTPHLFLEGMLIAAWAVEAERVFLYMRDEYPAVLEILRRELA 306

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
              A+GL+           + +  GAGAYICGEE+A++ES+EG +G PR +PP+ A VG+
Sbjct: 307 ALEAAGLIAPGY-------VELRRGAGAYICGEESAMIESIEGNRGIPRHRPPYVAQVGV 359

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
           +G PT V+N+E++  V  I R G    S   +   +G + +S+SG V  P         T
Sbjct: 360 FGRPTLVHNIETLHWVARICREGPEVLSATEKNGRKGLRSYSVSGRVAEPGVYLLPAGST 419

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
             ++I+   G          A  PGG S   LPA  M    +D+D L+  GS +G+AAV+
Sbjct: 420 IRDVIDAAGGM--AEGHVFKAYQPGGPSSGLLPA-HMDDIPLDFDTLQPHGSFIGSAAVV 476

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
           V+        A   +  F++ ESCGQCTPCR G    +++M       A+  +  LL ++
Sbjct: 477 VLSDQDRARDAALNMLRFFEAESCGQCTPCRVGCEKAVKLM------QAESWDRALLEDL 530

Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
              +   +IC LG AA  PI+  +K+F   I
Sbjct: 531 CDVLADASICGLGQAAPNPIRLTMKHFGDEI 561


>gi|23016780|ref|ZP_00056532.1| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
           subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 514

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 144/391 (36%), Positives = 216/391 (55%), Gaps = 25/391 (6%)

Query: 22  DSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           D++    +  + +    E  RD ++ E++ +GLRG GGAGF T  KW  +       P  
Sbjct: 144 DAILHEDYPVLARCRSGELPRDEVLAELERAGLRGMGGAGFPTARKWRAVAARPG--PRL 201

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +VVNADE EPGT KDR  ++     ++EG +IA++A+ A   ++Y+R E+    + L   
Sbjct: 202 VVVNADEGEPGTFKDRWFLQTNAARVLEGALIAAWAVEADEVYLYLRDEYADLHKLLTVL 261

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +              L   V + +  GAGAY+CGEE+AL+ESLEGK+G PR +PP+ A V
Sbjct: 262 IRA------------LPGSVPVHLRRGAGAYVCGEESALIESLEGKRGLPRQRPPYVAEV 309

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GL+G PT VNNVE++  V  IL  GA  ++  GR  +RG + +S+SG V  P        
Sbjct: 310 GLFGRPTVVNNVETLYWVSRILAEGAELFTDEGRNGHRGLRTYSVSGRVRLPGVKIAPNG 369

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
           IT  ELIE+ CGG+      L A +PGG+S   LPA       + +  ++E G  +G+AA
Sbjct: 370 ITITELIEEFCGGME-DGHQLRAYLPGGASGGFLPAHV--TPPLAFGAIEEHGGFIGSAA 426

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V+V  +  D+      L+ F+ HESCGQCTPCR GT     ++       + + + DLL 
Sbjct: 427 VVVFSQEDDLRAHALNLARFFAHESCGQCTPCRVGTAKAADLLA------SPRWDEDLLN 480

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
           ++++ +   +IC LG AA    Q L+++F  
Sbjct: 481 DLAQVMRDASICGLGQAAPNVWQSLLRHFPE 511


>gi|94313226|ref|YP_586435.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus
           metallidurans CH34]
 gi|93357078|gb|ABF11166.1| NADH:ubiquinone oxidoreductase complex I, chain F [Cupriavidus
           metallidurans CH34]
          Length = 414

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 137/408 (33%), Positives = 210/408 (51%), Gaps = 5/408 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +        G  L   ++ G  + + K L      +I E++ + LRG GGAGF+T  KW+
Sbjct: 7   VLLRDDVRVGADLEAWLAIGGGEGLAKAL-CDPGAVIGEIEQADLRGMGGAGFATHRKWA 65

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
            +    +D    ++ N +E EPGT KDR ++ H PH +IEG +IA+ A  A+   +YV  
Sbjct: 66  PVA-AAADGDKTIICNGNEDEPGTFKDRFLLEHTPHQVIEGALIAAAATRANHIVLYVNP 124

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGKK 186
              +    ++ AV +  A        +L G  + + V   +G YI GEETA++ S+EG  
Sbjct: 125 HQQQAIAVIRQAVGQWQAHPRYAELERLLGAPLSLGVVPSSGLYIGGEETAVIASVEGGF 184

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
             PR KPPFP+  G++G P+ VNNVE++A +P ILR GA WY   G  N  GTKL+S+SG
Sbjct: 185 PFPRRKPPFPSQQGVHGAPSIVNNVETLAHIPGILRHGAQWYRDLGIGNATGTKLYSLSG 244

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  M  + + L+ +H GG+        AV  GG S   L    +    +D+D
Sbjct: 245 DVLRPGLYELPMGTSLESLVFEHGGGM-LQGKEFKAVFTGGPSNTLLTKRDL-DVALDFD 302

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            ++   S LGT A+IV+   T I++ +     F+   SCGQC PC+ G+  +MR++ R+ 
Sbjct: 303 SVRLRRSRLGTGAMIVVSEGTSIVRKVAEFVSFFAQGSCGQCPPCKGGSFQLMRLLNRID 362

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            G     ++  L  + + + G   C L D A   ++  +  FR   E 
Sbjct: 363 TGRGVHADLAALENLCRILPGSGRCGLIDGAVTVVESSLHQFREEYEA 410


>gi|154247855|ref|YP_001418813.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2]
 gi|154161940|gb|ABS69156.1| NADH dehydrogenase (quinone) [Xanthobacter autotrophicus Py2]
          Length = 422

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 146/375 (38%), Positives = 198/375 (52%), Gaps = 4/375 (1%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
            D II  +K + LRG GGAGF T  KWS       D   Y+V N +E EPGT KDR ++R
Sbjct: 44  PDAIIETLKDADLRGMGGAGFPTWRKWSAAAASPCD-EKYVVCNGNEDEPGTFKDRHLLR 102

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL-GYD 158
             PH +IEG +IA+ A+ A+    YV        + ++ AVDE  AS LL S SK+ G  
Sbjct: 103 WTPHQVIEGALIAAVAVKANRVVFYVNPHQAEGIDQMRWAVDEWTASDLLASVSKVVGRP 162

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           V + V   +G YI GEETA++  L+G    PR KPPFP   G+ G PT +NN E++A VP
Sbjct: 163 VTLTVAPSSGRYIGGEETAIVSWLDGGFPFPRRKPPFPFESGVGGLPTLINNTETLANVP 222

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            IL+ GA WY   G     GTKLFS+SG V  P   E  M  + +EL+  H GG+     
Sbjct: 223 HILKNGADWYRDLGVGAAAGTKLFSLSGDVLNPGLYELPMGTSLEELVFVHGGGM-LDGR 281

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
              AV  GG S   L A  +    +D+D +K   S LGT A+IV+   T I++ +     
Sbjct: 282 AFKAVFTGGPSNTLLTARDL-DVALDFDSVKRRKSRLGTGAMIVISEGTSIVRKVAEYVA 340

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+   SCGQC  C+ GT  M R+++R+  G   + +   L  + + + G   CAL D A 
Sbjct: 341 FFASGSCGQCPSCKCGTFQMARLLDRIATGRGVEADRQALDHLCRILPGSGRCALIDGAV 400

Query: 399 WPIQGLIKNFRPLIE 413
             ++     F    E
Sbjct: 401 TVVESSRHTFPDEYE 415


>gi|297493962|gb|ADI40703.1| NADH dehydrogenase flavoprotein 1, 51kDa [Miniopterus schreibersii]
          Length = 275

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 169/261 (64%), Positives = 205/261 (78%), Gaps = 1/261 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 15  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 74

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 75  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 134

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+E
Sbjct: 135 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACDSGYDFDVFVLRGAGAYICGEETALIE 194

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
           S+EGK+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG +W++GFGRE N GTK
Sbjct: 195 SIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVSVSPTICRRGGAWFAGFGRERNSGTK 254

Query: 241 LFSISGHVNYPCTVEESMSIT 261
           LF+ISGHVN+PCTVEE MS+ 
Sbjct: 255 LFNISGHVNHPCTVEEEMSVP 275


>gi|218532919|ref|YP_002423735.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium chloromethanicum CM4]
 gi|218525222|gb|ACK85807.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium chloromethanicum CM4]
          Length = 572

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 147/396 (37%), Positives = 215/396 (54%), Gaps = 23/396 (5%)

Query: 21  SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
               + G +  ++++   E   D ++  +   GLRG GGAGF TG KW  +       P 
Sbjct: 191 DAYRAGGGYATLERLRSGELSVDDVLKVLDDGGLRGLGGAGFPTGRKWRSVRGEPG--PR 248

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KD+  +  +PH  +EG +I +  + A   +IY+R E+   RE L  
Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAAEVYIYLRDEYPISREILAR 308

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            + +    G             I +  GAGAYICGEE++L+ESLEGK+G PR KPPFP  
Sbjct: 309 EIAKLPEGGT-----------RIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQ 357

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+  PT +NN+E++  V  ++ RGA W+   GR    G + +S+SG V  P       
Sbjct: 358 VGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGLRSYSVSGRVKEPGVKLAPA 417

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +T  ELI+++CGGI     +  A +PGG+S   LPA  M    +D+  L++ G  +G+A
Sbjct: 418 GLTIQELIDEYCGGI-SDGHSFAAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AV+++    D+  A   L  F++ ESCGQCTPCR GT     +ME  V       + DLL
Sbjct: 476 AVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKARMLMENGV------WDTDLL 529

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            E+++ +   +IC LG AA+ P+  +IK F  L  E
Sbjct: 530 GELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565


>gi|296531991|ref|ZP_06894774.1| NADH dehydrogenase (quinone) [Roseomonas cervicalis ATCC 49957]
 gi|296267683|gb|EFH13525.1| NADH dehydrogenase (quinone) [Roseomonas cervicalis ATCC 49957]
          Length = 412

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 142/397 (35%), Positives = 206/397 (51%), Gaps = 5/397 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           G  L+  ++ G  + +   L   R  II  ++ SGLRG GGAGF T  KW  + +  +  
Sbjct: 16  GADLAAWLAVGGGEGLAAALA-DRAGIIPLLERSGLRGMGGAGFPTWRKWQAVAQQPAG- 73

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+V N +E EPGT KDR ++R  PH +IEG +IA+ A+ A    +Y+           
Sbjct: 74  GKYVVCNGNEDEPGTFKDRHLLRWTPHAVIEGGLIAALAVDASHLVLYINPHEAEAVAEA 133

Query: 137 QAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           + AV +     LLG+  + LG+ V + V   +G YI GEETA++  LEG    PR KPPF
Sbjct: 134 RRAVAQWRGHALLGAVEEALGHAVALTVVESSGRYIGGEETAVISWLEGSFPFPRRKPPF 193

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           PA  G+ G PT +NN E++A +P I   GA WY G G     GTKL+S+SG V  P   E
Sbjct: 194 PAEQGVGGAPTLINNTETLANIPYIFAHGAEWYRGLGVGEAVGTKLYSLSGDVMRPGLYE 253

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  +  ELI  H GG+  G D   AV  GG S   L    +    +D+D ++   S L
Sbjct: 254 LPMGTSLQELIFTHGGGMLEGRD-FKAVFTGGPSNTLLTKRDL-DVALDFDSVRARQSRL 311

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+IV+   T I++       F+   SCGQC PC+ GT  + R+++R+  G     ++
Sbjct: 312 GTGAMIVISEGTSIVRKTAEYIAFFAAGSCGQCPPCKAGTFQLARLLDRIEGGRGTAEDL 371

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             L+ + + + G   C L D A   ++  ++ F    
Sbjct: 372 RALHSLCRILPGSGRCGLIDGAVTVVESSLQTFPQEY 408


>gi|163853977|ref|YP_001642020.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|254563947|ref|YP_003071042.1| Tungsten-containing formate dehydrogenase subunit beta
           [Methylobacterium extorquens DM4]
 gi|163665582|gb|ABY32949.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium extorquens PA1]
 gi|254271225|emb|CAX27237.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens DM4]
          Length = 572

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 147/396 (37%), Positives = 215/396 (54%), Gaps = 23/396 (5%)

Query: 21  SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
               + G +  ++++   E   D ++  +   GLRG GGAGF TG KW  +       P 
Sbjct: 191 DAYRAGGGYATLERLRSGELPVDDVLKVLDDGGLRGLGGAGFPTGRKWRSVRGEPG--PR 248

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KD+  +  +PH  +EG +I +  + A   +IY+R E+   RE L  
Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAAEVYIYLRDEYPISREILAR 308

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            + +    G             I +  GAGAYICGEE++L+ESLEGK+G PR KPPFP  
Sbjct: 309 EIAKLPEGGT-----------RIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQ 357

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+  PT +NN+E++  V  ++ RGA W+   GR    G + +S+SG V  P       
Sbjct: 358 VGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGLRSYSVSGRVKEPGVKLAPA 417

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +T  ELI+++CGGI     +  A +PGG+S   LPA  M    +D+  L++ G  +G+A
Sbjct: 418 GLTIQELIDEYCGGI-SDGHSFAAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AV+++    D+  A   L  F++ ESCGQCTPCR GT     +ME  V       + DLL
Sbjct: 476 AVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKARMLMENGV------WDTDLL 529

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            E+++ +   +IC LG AA+ P+  +IK F  L  E
Sbjct: 530 GELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565


>gi|240141432|ref|YP_002965912.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens AM1]
 gi|22652727|gb|AAN03798.1|AF489516_1 tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens]
 gi|240011409|gb|ACS42635.1| Tungsten-containing formate dehydrogenase beta subunit
           [Methylobacterium extorquens AM1]
          Length = 572

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 147/396 (37%), Positives = 215/396 (54%), Gaps = 23/396 (5%)

Query: 21  SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
               + G +  ++++   E   D ++  +   GLRG GGAGF TG KW  +       P 
Sbjct: 191 DAYRAGGGYATLERLRSGELPVDDVLKVLDDGGLRGLGGAGFPTGRKWRSVRGEPG--PR 248

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KD+  +  +PH  +EG +I +  + A   +IY+R E+   RE L  
Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAADVYIYLRDEYPISREILAR 308

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            + +    G             I +  GAGAYICGEE++L+ESLEGK+G PR KPPFP  
Sbjct: 309 EIAKLPEGGT-----------RIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQ 357

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+  PT +NN+E++  V  ++ RGA W+   GR    G + +S+SG V  P       
Sbjct: 358 VGLFNRPTLINNIETLFWVRDLIERGAEWWKSHGRNGRVGLRSYSVSGRVKEPGVKLAPA 417

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +T  ELI+++CGGI     +  A +PGG+S   LPA  M    +D+  L++ G  +G+A
Sbjct: 418 GLTIQELIDEYCGGI-SDGHSFAAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AV+++    D+  A   L  F++ ESCGQCTPCR GT     +ME  V       + DLL
Sbjct: 476 AVVILSDQDDVRGAALNLMKFFEDESCGQCTPCRSGTQKARMLMENGV------WDTDLL 529

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            E+++ +   +IC LG AA+ P+  +IK F  L  E
Sbjct: 530 GELAQCMRDASICGLGQAASNPVSTVIKYFPDLFPE 565


>gi|83309268|ref|YP_419532.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1]
 gi|82944109|dbj|BAE48973.1| NADH:ubiquinone oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 467

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 143/381 (37%), Positives = 211/381 (55%), Gaps = 25/381 (6%)

Query: 32  VDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +D+ L  E  RD  + E++ +GLRG GGAGF T  KW  +       P  +VVNADE EP
Sbjct: 107 LDRCLSGELPRDEALTELERAGLRGMGGAGFPTARKWRSVAAQPG--PRLVVVNADEGEP 164

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           GT KDR  + +    ++EG +IA++A+ A   ++Y+R E+    + L   + +       
Sbjct: 165 GTFKDRWFLENHAAQVLEGALIAAWAVEADEVYLYLRDEYADLHKGLATLIRD------- 217

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                L  D+ I +  GAGAY+CGEE+AL+ESLEGK+G PR +PP+ A VGL+G PT VN
Sbjct: 218 -----LPGDITIHLRRGAGAYVCGEESALIESLEGKRGLPRQRPPYVAEVGLFGRPTLVN 272

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE++  V  +L  GA  +   GR  + G + +S+SG V  P        IT  ELI++ 
Sbjct: 273 NVETLYWVSRLLAEGAELFGNEGRNGHHGLRTYSVSGRVKEPGVKIAPNGITVSELIDEF 332

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
           CGG+      L A +PGG+S   LPA       + +  ++E G  +G+AAV+V  ++ D+
Sbjct: 333 CGGME-DGHVLAAYLPGGASGGFLPAR--LQPPLAFGAIEEHGGFIGSAAVVVFSQADDL 389

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
                 L+ F+ HESCGQCTPCR GT   + ++           + DLL +++  +   +
Sbjct: 390 RAVALNLARFFAHESCGQCTPCRVGTAKSVGLLA------GPAWDRDLLDDLAGVMRDAS 443

Query: 390 ICALGDAAAWPIQGLIKNFRP 410
           IC LG AA    Q L ++F  
Sbjct: 444 ICGLGQAAPNVWQSLFRHFPE 464


>gi|188579566|ref|YP_001923011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium populi BJ001]
 gi|179343064|gb|ACB78476.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium populi BJ001]
          Length = 572

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 215/396 (54%), Gaps = 23/396 (5%)

Query: 21  SDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
               + G +  ++++   G   + ++  +   GLRG GGAGF TG KW  +       P 
Sbjct: 191 DAYRAGGGYVTLERLRSGGLAVEDVLKVLDDGGLRGLGGAGFPTGRKWRSVRGEPG--PR 248

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KD+  +  +PH  +EG +I +  + A   +IY+R E+   RE L  
Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEATDVYIYLRDEYPISREILTR 308

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            + +    G             I +  GAGAYICGEE++L+ESLEGK+G PR KPPFP  
Sbjct: 309 EIAKLPEGGT-----------RIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQ 357

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+  PT +NN+E++  V  ++ RGA W+   GR    G + +S+SG V  P       
Sbjct: 358 VGLFNRPTLINNIETLFWVRDLIERGADWWKSHGRNGRVGLRSYSVSGRVKEPGVKLAPA 417

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +T  ELI+++CGG+     +  A +PGG+S   LPA  M    +D+  L++ G  +G+A
Sbjct: 418 GLTIQELIDEYCGGM-SDGHSFAAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AV+V+    D+  A   L  F++ ESCGQCTPCR GT     +ME  V       + +LL
Sbjct: 476 AVVVLSDQDDVRGAALNLMRFFEDESCGQCTPCRSGTQKARMLMENGV------WDTELL 529

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            E+++ +   +IC LG AA+ P+  +IK F  L  E
Sbjct: 530 GELAQCMRDASICGLGQAASNPVSSVIKYFPDLFPE 565


>gi|119897703|ref|YP_932916.1| hydrogen dehydrogenase subunit alpha [Azoarcus sp. BH72]
 gi|119670116|emb|CAL94029.1| probable hydrogen dehydrogenase, alpha subunit [Azoarcus sp. BH72]
          Length = 602

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 140/382 (36%), Positives = 205/382 (53%), Gaps = 16/382 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
            GR   ++E++ S LRGRGGAGF+T +KW+   +  +     +V NADE EPGT KDR +
Sbjct: 196 MGRSGWLDEMQRSNLRGRGGAGFTTAVKWTAC-RDAAGPQKVVVCNADEGEPGTFKDRLL 254

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KL 155
           +      + EG  +A++A GA    +Y+RGE+    ++L A + +  A+GLLG N   + 
Sbjct: 255 LTRMADAVFEGMTLAAWATGAQLGLLYLRGEYRYLLDALNATLTQRRAAGLLGRNILGEA 314

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G+D DI +H GAGAYICGEETALLESLEGK+G PR++PPFP   G  G PT VNNVE++A
Sbjct: 315 GFDFDIAIHLGAGAYICGEETALLESLEGKRGTPRIRPPFPVTHGYLGRPTVVNNVETLA 374

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
               I   G + ++  G   + GTKL SISG    P   E    +T + ++E        
Sbjct: 375 KTCLIACGGGAAFAATGTAQSTGTKLLSISGDCAAPGIYEYPFGVTVERVLEDCGA---- 430

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
              +  AV  GG++   L A + +  I   D            A +V D   D+ +    
Sbjct: 431 --SDTQAVQVGGAAGITLAAYEFQRRIAFED-------VPTAGAFMVFDSGRDLFEVARN 481

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
              F+ HESCG CTPCR GTG +   M++   G   + ++  +  + + ++  + C LG 
Sbjct: 482 FVAFFAHESCGFCTPCRVGTGLLKAAMDKFASGHGSRGDLADIEWIDRLLKNASHCGLGA 541

Query: 396 AAAWPIQGLIKNFRPLIEERID 417
           +A  P+   +  FR   E R+ 
Sbjct: 542 SAPNPVLDTLLKFRSFYERRMQ 563


>gi|170745441|ref|YP_001766898.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170659042|gb|ACB28096.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Methylobacterium radiotolerans JCM 2831]
          Length = 572

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 145/396 (36%), Positives = 214/396 (54%), Gaps = 23/396 (5%)

Query: 21  SDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
               + G +  +D++   +   D I+  +   GLRG GGAGF TG KW  +       P 
Sbjct: 191 DAYRAAGGYATLDRLRSGDLPVDDILKVLDDGGLRGLGGAGFPTGRKWRSVRGEPG--PR 248

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            + VN DE EPGT KD+  +  +PH  +EG +I +  + A   +IY+R E+   RE L  
Sbjct: 249 LMAVNGDEGEPGTFKDQLYLNTDPHRFLEGMLIGAHVVEAPEVYIYLRDEYPISREILTR 308

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            + +    G             I +  GAGAYICGEE++L+ESLEGK+G PR KPPFP  
Sbjct: 309 EIAKLPEGGP-----------RIHLRRGAGAYICGEESSLIESLEGKRGLPRHKPPFPFQ 357

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM 258
           VGL+  PT +NN+E++  V  ++ RG  W+   GR +  G + +S+SG V  P       
Sbjct: 358 VGLFNRPTLINNIETLFWVRDLIERGGDWWKSHGRNDRVGLRSYSVSGRVKEPGVKLAPA 417

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
            +T  ELI+++CGG+        A +PGG+S   LPA  M    +D+  L++ G  +G+A
Sbjct: 418 GLTIQELIDEYCGGMA-DGHTFAAYLPGGASGGILPAS-MNDIPLDFGTLEKYGCFIGSA 475

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
           AV+++    D+  A   L  F++ ESCGQCTPCR GT     +ME+ V       + +LL
Sbjct: 476 AVVILSDRDDVRGAALNLMRFFEDESCGQCTPCRSGTQKARILMEQGV------WDTELL 529

Query: 379 YEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
            E+S+ +   +IC LG AA+ P+  +IK F  L   
Sbjct: 530 GELSQCMRDASICGLGQAASNPLSSVIKYFPDLFPA 565


>gi|56695735|ref|YP_166086.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
 gi|56677472|gb|AAV94138.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 567

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 205/393 (52%), Gaps = 29/393 (7%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L    + G W+ V            + V A+GLRG GGAGF +G KW F+       P Y
Sbjct: 204 LKGLRAGGDWEAVQ-----------DSVLAAGLRGLGGAGFPSGRKWGFVRANPG--PRY 250

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L VN DE EPGT KDR  +   PH  +EG +IA++A+ A   +IY+R E+    E L+  
Sbjct: 251 LAVNGDEGEPGTFKDRYYLERVPHLFLEGMLIAAWAVEAETCYIYMRDEYPAVLEILRRE 310

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +    A+G++           I +  GAGAYICGEE+A++ES+EGK+G PR +PPF A V
Sbjct: 311 IAALEAAGIVAKGY-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAQV 363

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GL+G PT V+N+E++  V  + R G    +   +   +G + +S+SG V  P        
Sbjct: 364 GLFGRPTLVHNIETLHWVARVCREGPEVLNSIEKNGRKGLRSYSVSGRVARPGVHLLPAG 423

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
            T  ++I               A  PGG S   LPA  M    +D+D L+  GS +G+AA
Sbjct: 424 STIRDVIAAAG--GMAAGHVFKAYQPGGPSSGLLPAS-MDDIPLDFDTLQPHGSFIGSAA 480

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V+V+ +      A   +  F++ ESCGQCTPCR G    +++M       A+  +  LL 
Sbjct: 481 VVVLSQQDSARDAALNMLRFFEDESCGQCTPCRAGCEKAVKLM------QAEHWDQPLLE 534

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           E+ + +   +IC LG AA  PI+  +K+F   I
Sbjct: 535 ELCQVMADASICGLGQAAPNPIRLTMKHFAEEI 567


>gi|149202011|ref|ZP_01878985.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035]
 gi|149145059|gb|EDM33088.1| formate dehydrogenase, beta subunit [Roseovarius sp. TM1035]
          Length = 568

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 141/400 (35%), Positives = 206/400 (51%), Gaps = 23/400 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEK-----GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
           ++L    + G +  +  +          + +   +  +GLRG GGAGF +G KW F+   
Sbjct: 187 EALDAYRTAGGYATLADLRATRNADAEFERVQQTLLDAGLRGLGGAGFPSGRKWGFVRAE 246

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
               P YL VN DE EPGT KDR  +   PH  +EG +IA++A+ A   FIY+R E+   
Sbjct: 247 PG--PRYLAVNGDEGEPGTFKDRYYLERTPHLFLEGMLIAAWAVEAERCFIYMRDEYPAV 304

Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
            + L   +    A+ L+    K GY   + +  GAGAYICGEE+A++ES+EGK+G PR +
Sbjct: 305 LDILATEIAALEAADLI----KPGY---VELRRGAGAYICGEESAMIESIEGKRGLPRHR 357

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPF A VG++  PT VNNVE++  V  ILR G    +       +G + +S+SG V  P 
Sbjct: 358 PPFVAQVGIFNRPTLVNNVETLLWVTRILREGPEILNTVELNGRKGLRSYSVSGRVKNPG 417

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
                   T  ++I    G +        A  PGG S   LPA  M    +D+D L+  G
Sbjct: 418 VHLLPAGSTITDIIAAAGGML--DGHTFKAYQPGGPSSGLLPAS-MHDVPLDFDTLQPHG 474

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           + +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A  
Sbjct: 475 TFIGSAAVVVLSDHDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADT 528

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +  LL E+   +   +IC LG AA  PI+  +K+F   I
Sbjct: 529 WDQPLLTELCTAMSDASICGLGQAAPNPIRLTMKHFADEI 568


>gi|85706874|ref|ZP_01037965.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217]
 gi|85668667|gb|EAQ23537.1| formate dehydrogenase, beta subunit [Roseovarius sp. 217]
          Length = 568

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 139/400 (34%), Positives = 205/400 (51%), Gaps = 23/400 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILE-----KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
           +      + G +  +  +          + +   +  +GLRG GGAGF +G KW F+   
Sbjct: 187 EGFEAYRAAGGYATLADLRAVANADAEFERVQQTLLDAGLRGLGGAGFPSGRKWGFVRAE 246

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
               P YL VN DE EPGT KDR  +  +PH  +EG +IA++A+ A   FIY+R E+   
Sbjct: 247 AG--PRYLAVNGDEGEPGTFKDRYYLERQPHLFLEGMLIAAWAVAAERCFIYMRDEYPAV 304

Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
            E L + +    A+GL+ +         + +  GAGAYICGEE+A++ES+EG +G PR +
Sbjct: 305 LEILASEIAALEAAGLIAAGY-------VELRRGAGAYICGEESAMIESIEGNRGLPRHR 357

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           PPF A VG++  PT VNNVE++  V  ILR G    +       +G + +S+SG V  P 
Sbjct: 358 PPFVAQVGIFNRPTLVNNVETLLWVTRILREGPEILNSVEHNGRKGLRSYSVSGRVKNPG 417

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
                   T  ++I    G +     +  A  PGG S   LPA  M    +D+D L+  G
Sbjct: 418 VHLLPAGSTITDIIAAAGGMLE--GHSFKAYQPGGPSSGLLPAS-MNDIPLDFDTLQPHG 474

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S +G+AAV+V+        A   +  F++ ESCGQCTPCR G    +++M       A  
Sbjct: 475 SFIGSAAVVVLSDHDRARDAALNMLRFFEDESCGQCTPCRVGCEKAVKLM------QADT 528

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +  LL E+   +   +IC LG AA  PI+  +K+F   I
Sbjct: 529 WDQPLLAELCTAMSDASICGLGQAAPNPIRLTMKHFADEI 568


>gi|56696439|ref|YP_166796.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
 gi|56678176|gb|AAV94842.1| formate dehydrogenase, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 560

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 141/393 (35%), Positives = 205/393 (52%), Gaps = 29/393 (7%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L    + G W+ V            + V A+GLRG GGAGF +G KW F+       P Y
Sbjct: 197 LKGLRAGGDWEAVQ-----------DSVLAAGLRGLGGAGFPSGRKWGFVRANPG--PRY 243

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L VN DE EPGT KDR  +   PH  +EG +IA++A+ A   +IY+R E+    E L+  
Sbjct: 244 LAVNGDEGEPGTFKDRYYLERVPHLFLEGMLIAAWAVEAETCYIYMRDEYPAVLEILRRE 303

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +    A+G++           I +  GAGAYICGEE+A++ES+EGK+G PR +PPF A V
Sbjct: 304 IAALEAAGIVAKGY-------IDLRRGAGAYICGEESAMIESIEGKRGLPRHRPPFVAQV 356

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           GL+G PT V+N+E++  V  + R G    +   +   +G + +S+SG V  P        
Sbjct: 357 GLFGRPTLVHNIETLHWVARVCREGPEVLNSVEKNGRKGLRSYSVSGRVARPGVHLLPAG 416

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
            T  ++I               A  PGG S   LPA  M    +D+D L+  GS +G+AA
Sbjct: 417 STIRDVIAAAG--GMAAGHVFKAYQPGGPSSGLLPAS-MDDIPLDFDTLQPHGSFIGSAA 473

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V+V+ +      A   +  F++ ESCGQCTPCR G    +++M       A+  +  LL 
Sbjct: 474 VVVLSQQDSARDAALNMLRFFEDESCGQCTPCRAGCEKAVKLM------QAEHWDQPLLE 527

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           E+ + +   +IC LG AA  PI+  +K+F   I
Sbjct: 528 ELCQVMADASICGLGQAAPNPIRLTMKHFAEEI 560


>gi|110634769|ref|YP_674977.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mesorhizobium sp. BNC1]
 gi|110285753|gb|ABG63812.1| NAD-dependent formate dehydrogenase flavoprotein subunit
           [Chelativorans sp. BNC1]
          Length = 557

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 141/395 (35%), Positives = 215/395 (54%), Gaps = 17/395 (4%)

Query: 20  LSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L      G +  + KI E+    D +I  +  +GLRG GGAGF  G KW  +       P
Sbjct: 178 LDAYRGAGGYQLLQKIRERAVTIDAVIAMLGDAGLRGLGGAGFPAGKKWQIVRSYPG--P 235

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             + +N DE EPGT KDR  +  +PH   EG +IA++A+ A   + Y+R E+      L+
Sbjct: 236 RLMSINGDEGEPGTFKDRIYLERDPHRTFEGALIAAYAVEAERIYFYMRDEYPAVLAILR 295

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A +    A+G++           I +  GAGAYICGEE+A+LES+EG++G PR +PP+ A
Sbjct: 296 AEIAALEAAGIVAPGF-------IELRRGAGAYICGEESAMLESIEGRRGMPRHRPPYIA 348

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VGL+G PT  +NVE++  +  I+ +G  W++G G+  + G + +S+SG V  P      
Sbjct: 349 EVGLFGRPTLNHNVETLWWIRDIVEKGPDWFAGLGKPGHPGVRSWSVSGRVKEPGVKLAP 408

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +T   LIE +CGG+  G +   A +PGG+S   LPA      +     L + GS +G+
Sbjct: 409 AGVTARGLIEDYCGGMADGHE-FKAYLPGGASGGILPAALGDIPLDFGGELAKQGSFVGS 467

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            AV+V  ++ ++      L  F+KHESCG+CTPCREGT  M+ +++    G  ++  I  
Sbjct: 468 HAVVVFSQADNLKDVTLNLMNFFKHESCGKCTPCREGTEKMVTLLK--EPGPLRETAIRD 525

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           L  V   +   +IC LG AA  P+  L+ +F   +
Sbjct: 526 LETV---MRDSSICGLGQAAPNPVNHLLTHFWDDL 557


>gi|258591892|emb|CBE68197.1| Putative NADH dehydrogenase; similar to formate dehydrogenase, beta
           subunit (fdhB1) [NC10 bacterium 'Dutch sediment']
          Length = 472

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 128/388 (32%), Positives = 203/388 (52%), Gaps = 13/388 (3%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  + + L+   + ++ EV+ S LRGRGGAGF TG KW  + +  +    ++VVNADE 
Sbjct: 94  DYGALRRALDLTSEEVLREVERSELRGRGGAGFPTGRKWRAVAQQEA-HEKFVVVNADEG 152

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           +PG   DR I+  +PH L+EG  IA++A+GA    IY+R E+     +LQ AV E     
Sbjct: 153 DPGAYIDRVILERDPHLLLEGVRIAAYAVGARRGVIYLRKEYPEALPALQRAVQEAGRVW 212

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                     +  + +  G G+Y+CGEETALL S+EGK+ + R +PP+P   GLY  PT 
Sbjct: 213 --------PGEFAVEIVVGQGSYVCGEETALLNSIEGKRPEVRTRPPYPTARGLYQRPTL 264

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           +NNVE++A +P I++ GA+ Y   G   +RGTKL S++     P   E    IT  E++E
Sbjct: 265 INNVETLAAIPWIIQEGAAAYRNLGFSQSRGTKLLSLNSLFRKPGLYEVEFGITLREVVE 324

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG+  G   L  +I GG     +P   +    + ++ L+E+G+G+G   V+  D  T
Sbjct: 325 GLGGGLCSGP--LKGLIVGGPLAGVIPPE-LLDTRLGFEELREIGAGVGHGGVVAFDDRT 381

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI-AQKREIDLLYEVSKNIE 386
            I++    +  F  +ESCG+CTPCR G+  + +V     +     +        +   + 
Sbjct: 382 SILELAHHVFSFGAYESCGKCTPCRLGSPRVEQVFALARQAETPSQGAYREFGAIVAALH 441

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEE 414
             ++C  G   A      ++ +R  +E 
Sbjct: 442 QASLCGHGTGLAAFAMSAMRYYRKELEA 469


>gi|300432247|gb|ADK12978.1| Hox2 diaphorase large subunit [Thiocapsa roseopersicina]
          Length = 610

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 130/396 (32%), Positives = 201/396 (50%), Gaps = 17/396 (4%)

Query: 25  SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           +      V ++L+ G +  + EV+ SGLRGRGGAGF+T +KW F  +       Y+V NA
Sbjct: 193 ATDG-AAVRRLLDAGAEAALAEVERSGLRGRGGAGFTTALKWRFCREAP-GTDRYVVCNA 250

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
           DE EPGT KDR ++      +IEG  + +  IGA   F+Y+RGE+      L++ +    
Sbjct: 251 DEGEPGTFKDRVLLTDYTDLVIEGMTVCAGVIGARRGFLYLRGEYRYLLPHLESVLQRRR 310

Query: 145 ASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
           A GLLG+      G+D DI +H GAGAYICGEE+AL+ESLEGK+G  R +PPFP   G  
Sbjct: 311 AEGLLGTRILGADGFDFDIEIHLGAGAYICGEESALIESLEGKRGVTRKRPPFPVTSGFD 370

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
             PT VNNVE+      +++ G  W  G G + + G+K+ S+SG    P   E       
Sbjct: 371 DQPTVVNNVETFLAAARVVQWGGYWLRGEGTDQSAGSKILSVSGDCARPGIYEYPFGTPV 430

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            +++           +N  AV   G++   L        I+ ++ L   GS +      +
Sbjct: 431 HQVLSDCGA------ENTQAVQISGAAGATLSPAD-FDRIIAFEDLPTAGSFM------I 477

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
            D S D++  +   + F+ HESCG CTPCR G   +  ++E++  G   + ++  +  + 
Sbjct: 478 FDHSRDLLDMVRNFAAFFAHESCGFCTPCRVGGALLRNLVEKVAAGQGSEYDLSEMRRIG 537

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +   + C LG  A   +   +  F  +   R+ +
Sbjct: 538 TVMRRASYCGLGHTAPNHVVNTLDKFPLIYGRRLAR 573


>gi|86748476|ref|YP_484972.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
 gi|86571504|gb|ABD06061.1| NADH dehydrogenase (quinone) [Rhodopseudomonas palustris HaA2]
          Length = 428

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 159/385 (41%), Positives = 219/385 (56%), Gaps = 9/385 (2%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFM---PKVCSDRPHYLVVNADESEPGTCKDR 95
             + II  ++A+GLRGRGGAGF T  KW FM    +       YL VN DE+EPG+ KDR
Sbjct: 39  SPEAIIALIEAAGLRGRGGAGFPTANKWRFMRAGAEKAGPGACYLCVNGDETEPGSFKDR 98

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-K 154
            +M   P  LIEG  IA++A+GA    I VR E+     +L  A+ E   +GLLG +   
Sbjct: 99  LLMEALPQQLIEGATIAAYAMGATEVIILVRDEYRAAAAALSRAIVEAEQTGLLGRDILG 158

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
            G+D+ + VH  AG YI GEETAL+ +LEG++  PR +PP+PA  GL+G PTTVNNVE++
Sbjct: 159 SGFDLTMRVHASAGRYIVGEETALIAALEGERPVPRHRPPYPAVSGLWGRPTTVNNVETL 218

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           + VP+I+  GA WY G    N  GTKL+ +SG V  P  +E  M  T  EL    CGGIR
Sbjct: 219 SAVPSIVEHGAEWYQGLSHTNEGGTKLYGVSGCVARPQLIEAPMGTTAREL-FDLCGGIR 277

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
            G   L A  PGG +   L   ++    +D+   K  GS LGT A+IV+D     + AI 
Sbjct: 278 QG-RALFAFQPGGGATAFLETAEL-DVPLDFAHTKRAGSSLGTGALIVLDDHACPVAAIG 335

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN--IEGRTICA 392
           R   FY  ESCG CTPCR+G  W+ ++++ +  G   + +IDLL++        GR+ C 
Sbjct: 336 RHMRFYARESCGLCTPCRDGLPWVAKLLDTIEAGKGTRGDIDLLHQHVALSGPSGRSYCD 395

Query: 393 LGDAAAWPIQGLIKNFRPLIEERID 417
           L   A  P++  ++ F  +    + 
Sbjct: 396 LNTGALTPLRSGLERFGDIFAAHLQ 420


>gi|158421745|ref|YP_001523037.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
 gi|158328634|dbj|BAF86119.1| NADH dehydrogenase [Azorhizobium caulinodans ORS 571]
          Length = 417

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 147/406 (36%), Positives = 207/406 (50%), Gaps = 5/406 (1%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           I  N     G  L    + G    +D  L      II  ++A+GLRG GGAGF T  KW+
Sbjct: 7   ILLNPAIQLGADLDGWFAAGGGLGLDAALA-DPGAIIPALEAAGLRGMGGAGFPTHRKWA 65

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                 +     +V N +E EPGT KDR ++R  PH +IEG +IA+ AIGA   F+Y+  
Sbjct: 66  AAAAAQN-TDRTVVCNGNEDEPGTFKDRHLLRWTPHQVIEGALIAALAIGARRVFLYINP 124

Query: 128 EFIRERESLQAAVDE-CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
           + I     ++ AV +      L     ++G  +++ V   +G YI GEETA++ SLEG  
Sbjct: 125 QQIEALAEMRRAVAQWADTDRLRAVERRIGATLELTVFPTSGRYIGGEETAVISSLEGGF 184

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
             PR KPPFPA  G  G PT +NN E++A VP ILR GA+WY   G     GTKL+S+SG
Sbjct: 185 PFPRRKPPFPAESGYRGTPTLINNTETLANVPHILRHGAAWYRRLGLGEAVGTKLYSLSG 244

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            V  P   E  M     +LI  H GG+        AV  GG S   L A  +    +D+D
Sbjct: 245 DVLRPGLYELPMGTPLQDLIFVHGGGM-LEGKAFKAVFTGGPSNTLLTARDL-DVALDFD 302

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            ++   S LGT A+IV+   T I++ +     F+   SCGQC PC+ GT  M R+++R+ 
Sbjct: 303 SVRARRSRLGTGAMIVISEGTSIVRKVAEYIDFFAKGSCGQCPPCKAGTFQMARLLDRVD 362

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            G A   ++  LY + + + G   C L D A   ++  +  F    
Sbjct: 363 SGRAVPADLAALYNLCQILPGSGRCGLIDGAVTVVESSLHTFPAEY 408


>gi|119899329|ref|YP_934542.1| formate dehydrogenase (NADP+) subunit beta [Azoarcus sp. BH72]
 gi|119671742|emb|CAL95655.1| probable formate dehydrogenase (NADP+), beta subunit [Azoarcus sp.
           BH72]
          Length = 571

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 138/400 (34%), Positives = 206/400 (51%), Gaps = 24/400 (6%)

Query: 19  SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
                 + G +   + ++  E   + ++  +  + LRG GGAGF    KW  +    + R
Sbjct: 177 DFDAYRADGGYRLYESVVRGEHDAEEVLGVLDTAILRGLGGAGFPAARKWRTVMAQPAPR 236

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
              + VN DE EPGT KDR  +  +PH  +EG +IA+  +G    +IY+R E+   R  L
Sbjct: 237 N--MAVNIDEGEPGTFKDRHYLGRDPHRFLEGMLIAARVVGISAIWIYIRDEYPALRRML 294

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
            A +D+  A+              + +  GAGAYICGEE+A++ES+EGK+G PRL+PP+ 
Sbjct: 295 LAELDKLRAAWPDLP--------PVELRRGAGAYICGEESAMIESIEGKRGMPRLRPPYV 346

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILR----RGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           A VGL+G PT V+N E++  V  I+     +GA W  G GR   RG + FS+SG V  P 
Sbjct: 347 AEVGLFGRPTLVHNPETLWWVRDIVTAGLVQGAQWLEGRGRNGRRGLRSFSVSGRVAKPG 406

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            V     IT  +L+++HCGG+      L    PGG+S   LPA  +    +D+D L   G
Sbjct: 407 VVVTDAGITLRQLVDEHCGGM-LPGHELYGYFPGGASGGILPAS-LADVPLDFDTLAPYG 464

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
             +G+AA++V  +             F+ HESCGQCTPCR GT     +M          
Sbjct: 465 CFIGSAAIVVFSQHDQARVLAENAMHFFAHESCGQCTPCRVGTAKAADLMAA------PT 518

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            +  LL E+   +   +IC LG AA  P++ +++ F   +
Sbjct: 519 WDAGLLDELGSAMMDASICGLGQAAPNPMRSVLRYFPQEV 558


>gi|240276236|gb|EER39748.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Ajellomyces
           capsulatus H143]
          Length = 282

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 176/254 (69%), Positives = 211/254 (83%)

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEET+L+ESLEGK G+PRLKPPFPA VGL+GCP+TV NVE++AV PTI RRG  W
Sbjct: 2   GAYICGEETSLIESLEGKAGKPRLKPPFPAAVGLFGCPSTVTNVETVAVAPTICRRGGKW 61

Query: 228 YSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG 287
           ++ FGRE N+GTKLF ISGHVN PCTVEE MSI   ELIE+HCGG+RGGWDNLLAVIPGG
Sbjct: 62  FASFGRERNQGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLAVIPGG 121

Query: 288 SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ 347
           SS P LP       +MD+D LK+  SGLGTAAVIVMD+STD++ AI RLS FYKHESCGQ
Sbjct: 122 SSTPILPKHICDDQLMDFDALKDAQSGLGTAAVIVMDKSTDVVAAISRLSAFYKHESCGQ 181

Query: 348 CTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKN 407
           CTPCREG+ W M++M+R  +G A++REID+L E++K +EG TICALG+A AWPIQGLI++
Sbjct: 182 CTPCREGSKWTMQMMQRFERGQAREREIDMLQELTKQVEGHTICALGEAFAWPIQGLIRH 241

Query: 408 FRPLIEERIDQYHR 421
           FRP +E RI +Y +
Sbjct: 242 FRPELEARIRKYEQ 255


>gi|134098995|ref|YP_001104656.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911618|emb|CAM01731.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 559

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 204/388 (52%), Gaps = 9/388 (2%)

Query: 27  GHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           G W    + +  G    ++ EV A+GLRGRGGA +    KW  + +  +  P Y+VVN D
Sbjct: 174 GEWQVWPETVSSGDPTSVLAEVAAAGLRGRGGAEYPVAAKWRAVARGPA--PRYVVVNGD 231

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG+  DR +M  +PH ++EG  +A FA GAH  F++VR E+    + ++ AV E  +
Sbjct: 232 EGDPGSYCDRLLMEADPHRVLEGLALACFAAGAHRGFVFVRSEYPIAVDRMRVAVAEARS 291

Query: 146 SGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G  G N    G+D++I V  GAG+Y+ GEETALL +L+G +G  R +PP+P ++G  G 
Sbjct: 292 AGHFGPNVHGTGFDLEIDVVQGAGSYVAGEETALLHALQGLRGAVRPRPPYPTSLGFEGH 351

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT VNNVE+IA VP ++R G   Y+  G     GTKL S+S     P   E        +
Sbjct: 352 PTAVNNVETIATVPWVVRHGGIEYARMGTPEETGTKLVSLSERFARPAVYEVEFGTPLRD 411

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++E   GG+R   + L AV  GG     L   ++   ++      + G  LG  +++ +D
Sbjct: 412 IVEVLGGGLRDDRE-LRAVQVGGPLGGFLAPDELDLPLLADAL-ADAGVALGHGSLVAID 469

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
           RS    + +  L  F   ESCG CTPCR G+   + +  RL      + E   L EV   
Sbjct: 470 RSVSAPELLRHLWSFAAAESCGACTPCRVGSRRGLELAYRLAYTDTAETEHQHLLEV--- 526

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +   ++CA G   A  ++ L++ F    
Sbjct: 527 MGTGSLCAFGRGVAGSVRSLLRVFSHDF 554


>gi|291006765|ref|ZP_06564738.1| NADH-quinone oxidoreductase chain F [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 560

 Score =  325 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 135/388 (34%), Positives = 204/388 (52%), Gaps = 9/388 (2%)

Query: 27  GHWDNVDKILEKG-RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           G W    + +  G    ++ EV A+GLRGRGGA +    KW  + +  +  P Y+VVN D
Sbjct: 175 GEWQVWPETVSSGDPTSVLAEVAAAGLRGRGGAEYPVAAKWRAVARGPA--PRYVVVNGD 232

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E +PG+  DR +M  +PH ++EG  +A FA GAH  F++VR E+    + ++ AV E  +
Sbjct: 233 EGDPGSYCDRLLMEADPHRVLEGLALACFAAGAHRGFVFVRSEYPIAVDRMRVAVAEARS 292

Query: 146 SGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
           +G  G N    G+D++I V  GAG+Y+ GEETALL +L+G +G  R +PP+P ++G  G 
Sbjct: 293 AGHFGPNVHGTGFDLEIDVVQGAGSYVAGEETALLHALQGLRGAVRPRPPYPTSLGFEGH 352

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT VNNVE+IA VP ++R G   Y+  G     GTKL S+S     P   E        +
Sbjct: 353 PTAVNNVETIATVPWVVRHGGIEYARMGTPEETGTKLVSLSERFARPAVYEVEFGTPLRD 412

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++E   GG+R   + L AV  GG     L   ++   ++      + G  LG  +++ +D
Sbjct: 413 IVEVLGGGLRDDRE-LRAVQVGGPLGGFLAPDELDLPLLADAL-ADAGVALGHGSLVAID 470

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
           RS    + +  L  F   ESCG CTPCR G+   + +  RL      + E   L EV   
Sbjct: 471 RSVSAPELLRHLWSFAAAESCGACTPCRVGSRRGLELAYRLAYTDTAETEHQHLLEV--- 527

Query: 385 IEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +   ++CA G   A  ++ L++ F    
Sbjct: 528 MGTGSLCAFGRGVAGSVRSLLRVFSHDF 555


>gi|187926569|ref|YP_001892914.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J]
 gi|241666079|ref|YP_002984438.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D]
 gi|187728323|gb|ACD29487.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J]
 gi|240868106|gb|ACS65766.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D]
          Length = 525

 Score =  324 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 123/397 (30%), Positives = 203/397 (51%), Gaps = 14/397 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + L     RG    ++K        ++N V AS LRGRGGA F  G+KW  +   C++  
Sbjct: 140 RDLPTYR-RGG-AALEKARRMAPQALVNMVAASRLRGRGGAAFPAGIKWQAVASACAE-T 196

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+VVNADE +PG   DR ++  +P  LIE   IA+ A+GA   +IY+R E+      + 
Sbjct: 197 KYVVVNADEGDPGAFSDRFLLEEDPFRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMS 256

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+++   +G LG        +++ +  G GAYICGEET+LL +LEG++ + R +PP  +
Sbjct: 257 HALEQARVAGWLGP------TLELELVVGQGAYICGEETSLLNALEGRRPEVRPRPPQIS 310

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT V+NVE++  +P I+  GA+ Y+  G  N+RGTKL S++     P   E  
Sbjct: 311 ECGLFGAPTLVHNVETLCAIPWIVTHGAAAYAALGFSNSRGTKLLSLNSLFRRPGLYEVE 370

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             I+  +++E+   G+R G  N L V  GG     +P   +    + Y+ ++ +   +G 
Sbjct: 371 FGISLADVVEQLGQGLRRGKLNGLMV--GGPLAGIVPP-TLLDTRLGYEEMQTIDCAVGH 427

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             VI     T I + + ++  F   ESCG+CTPC  GT  +  + +          + D 
Sbjct: 428 GGVIAFADDTSIPRIVAQVLRFGARESCGKCTPCHLGTPILAAMADAAAN--RLPVDADR 485

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
              +   +   ++C  G   A  +Q + +++   ++ 
Sbjct: 486 FRRLIDALAATSLCGHGRGLAEFVQSVRRHYPSELQA 522


>gi|284030068|ref|YP_003379999.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Kribbella flavida DSM 17836]
 gi|283809361|gb|ADB31200.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Kribbella flavida DSM 17836]
          Length = 565

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 207/383 (54%), Gaps = 9/383 (2%)

Query: 28  HWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           H+ ++  +L  +   D +I  ++ +GLRG GGAGF TG KW  + +       Y + NAD
Sbjct: 172 HYRSLRALLSGQLSADEVITALQDAGLRGMGGAGFPTGKKWELV-RAAEGAVKYAICNAD 230

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ESEPGT KDR ++  +PH ++EG ++     GA   ++++R E+  E   L + +     
Sbjct: 231 ESEPGTFKDRQLLAEQPHLVLEGLLMGMLVTGAEEGWVFIRHEYGPEEAVLHSEIGRLRE 290

Query: 146 SGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
            GL+G +    G  + + +    G YI GEETALLE +EG +G+PR KPPFP N GL+G 
Sbjct: 291 QGLIGPDVLGTGRRLMLDIFTSPGGYILGEETALLECMEGHRGEPRNKPPFPGNYGLWGK 350

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
           PT +N+VE+ A VP I+ RGA W++  G     G K F++SGHV  P      M  T  +
Sbjct: 351 PTLMNSVETFADVPAIVARGADWWNAQGVNGATGLKFFAVSGHVERPGVYCVPMGTTIRD 410

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           LI+   G   G    L AV PGG+S   L    +    +D+  L E GS LG+ A++VM 
Sbjct: 411 LIDVAGGVAGGAE--LEAVQPGGASSNFLGPEHL-DVPLDFGTLAEAGSMLGSGAMVVMA 467

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK--GIAQKREIDLLYEVS 382
             TD + A   +  F+++ESCG+C PCR G+     ++   ++  G   +     L E+ 
Sbjct: 468 AGTDALAAATNVLRFFRNESCGKCVPCRVGSTKAHDLLTDTLRSGGELDEARKARLLELE 527

Query: 383 KNIEGRTICALGDAAAWPIQGLI 405
             +   +IC LG  A  P+  ++
Sbjct: 528 LVLRKSSICGLGQVALGPVVSVL 550


>gi|300690964|ref|YP_003751959.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           PSI07]
 gi|299078024|emb|CBJ50666.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           PSI07]
          Length = 421

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 142/397 (35%), Positives = 203/397 (51%), Gaps = 5/397 (1%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           G      ++ G    ++  L      II+ ++++GL G GGAGF T  KW       S  
Sbjct: 16  GADYDRWIAAGGGAGLEIALA-NPASIIDTIESAGLAGMGGAGFPTHRKWRAAA-SLSAS 73

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             Y+VVN +E EPGT KD  ++   PH ++EG +IA+ AI A     YV         +L
Sbjct: 74  VKYVVVNGNEDEPGTFKDGLLLARTPHQVVEGALIAALAIRATHVVFYVNPRIADGLAAL 133

Query: 137 QAAVDECYASGLLGSNSK-LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
             A+ +  AS L+   +  LG+ V + V   +G YI GE TA++ SLEG    PR KPP 
Sbjct: 134 DEAIAQWRASPLVERLAATLGHPVALAVARSSGRYIGGEATAIVSSLEGGFPFPRRKPPH 193

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P   G+ G PT +NN E+IA VP ILR G + Y   G     GTKL+S+SG V  P   E
Sbjct: 194 PTESGIGGAPTLINNTETIANVPHILREGPAAYRALGVGEACGTKLYSLSGDVLRPGLYE 253

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             M  +  EL+  H GG+  G      V  GG S   L A  +    +D+  ++  GS L
Sbjct: 254 LPMGTSLRELVFAHGGGM-LGGKAFKGVFTGGPSNTLLTAADL-DVALDFASVRARGSNL 311

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT A+IV+   T I++ + R   F+  ESCGQC PC+ GT  M R++ R+  G A +R++
Sbjct: 312 GTGAMIVIGEGTSIVREVARYVEFFAAESCGQCPPCKCGTFQMARLLHRIDTGAASRRDV 371

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             L  + + + G   CAL D A   ++  ++ F    
Sbjct: 372 TALKSLCETLPGSGRCALIDGAVTVVESSLRTFPREY 408


>gi|309782672|ref|ZP_07677393.1| formate dehydrogenase, beta subunit [Ralstonia sp. 5_7_47FAA]
 gi|308918450|gb|EFP64126.1| formate dehydrogenase, beta subunit [Ralstonia sp. 5_7_47FAA]
          Length = 449

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 122/397 (30%), Positives = 205/397 (51%), Gaps = 14/397 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + L     RG    ++K  +     ++N ++AS LRGRGGA F  G+KW  +   C++  
Sbjct: 64  RDLPTYR-RGG-AALEKARQMAPQALLNMMEASRLRGRGGAAFPAGIKWQAVAGACAE-T 120

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+VVNADE +PG   DR ++  +P  LIE   IA+ A+GA   +IY+R E+      + 
Sbjct: 121 KYVVVNADEGDPGAFSDRFLLEDDPFRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMS 180

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+++   +G LG        +++ +  G GAYICGEET+LL +LEG++ + R +PP  +
Sbjct: 181 HALEQARVAGWLGP------TLELELVVGQGAYICGEETSLLNALEGRRPEVRPRPPQIS 234

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT V+NVE++  +P I+  GA+ Y+  G  N+RGTKL S++     P   E  
Sbjct: 235 ERGLFGAPTLVHNVETLCAIPWIVTHGAAAYAALGFSNSRGTKLLSLNSLFCRPGLYEVE 294

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             I+  +++E+   G+R G  N L V  GG     +P   +    + Y+ ++ +   +G 
Sbjct: 295 FGISLADVVEQLGQGLRRGKLNGLMV--GGPLAGIVPP-TLLDTRLGYEEMQAIDCAVGH 351

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             VI     T I + + ++  F   ESCG+CTPC  GT  +  + +          + D 
Sbjct: 352 GGVIAFADDTSIPRIVAQVLRFGARESCGKCTPCHLGTPILAAMADAAAN--RLPVDADR 409

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
              +   +   ++C  G   A  +Q + +++   ++ 
Sbjct: 410 FRRLIDALAATSLCGHGRGLAEFVQSVRRHYPSELQA 446


>gi|237653484|ref|YP_002889798.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
 gi|237624731|gb|ACR01421.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Thauera
           sp. MZ1T]
          Length = 585

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 152/408 (37%), Positives = 224/408 (54%), Gaps = 26/408 (6%)

Query: 12  LYGLQGK-----SLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGM 64
              L  +      L+D  + G +  + ++   E G   +   +  +GLRG GGAGF T  
Sbjct: 176 RGALDPEPIAWQRLADYRAAGGYTLLQRLRSGETGVAALEARLAEAGLRGLGGAGFPTAR 235

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           KW  +    +  P YLVVNADE EPGT KDR  +   PH ++EG + ++ A+GA   ++Y
Sbjct: 236 KWQAVRAGAA--PRYLVVNADEGEPGTFKDRHYLETAPHRVLEGALASALAVGAAAIYVY 293

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           +R E+      L+ A+ E  A+GL+           I++  GAGAYICGEE+AL+ESLEG
Sbjct: 294 LRDEYPGLHAVLREAIAELEAAGLVAPGF-------IVLRRGAGAYICGEESALIESLEG 346

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           K G+PR +PPF A  GL+G PT VNNVE++  +P +    A   +G GR    G + FS+
Sbjct: 347 KPGKPRHRPPFVAEAGLFGRPTLVNNVETLYWIPLLAAGAAF--AGEGRRGRSGLRSFSV 404

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG VN P        IT  EL+++HCGG+      LLA +PGG+S   LPA  +    +D
Sbjct: 405 SGRVNKPGVHLAPAGITLRELVDEHCGGL-QPGHRLLAYLPGGASGGILPAA-LADLPLD 462

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D L+  GS +G+AA+IV+    D+      L  F+  ESCGQCTPCR GT  ++ ++  
Sbjct: 463 FDTLQPHGSFIGSAAIIVLSDQDDLRAVADNLLAFFADESCGQCTPCRLGTEKLLTLL-- 520

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
                    ++  L  +++ +   +IC LG AA  P+  L++ F   +
Sbjct: 521 ----RTDDWDVARLQALAQTLRDASICGLGQAAPNPVSSLLRFFPAEL 564


>gi|195091512|ref|XP_001997541.1| GH25296 [Drosophila grimshawi]
 gi|193906148|gb|EDW05015.1| GH25296 [Drosophila grimshawi]
          Length = 833

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 166/338 (49%), Positives = 213/338 (63%), Gaps = 3/338 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D DRIF NLYG     L  +  RG W     +L+ G +WI++EVK SGLRGRGG+G+ 
Sbjct: 126 LKDCDRIFQNLYGFHDWRLKGACQRGDWYRTADLLDMGANWIVDEVKRSGLRGRGGSGYY 185

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG KW F+ KV +     L++N  E EPGTCKDR+I+RHEPH +IEGC++A +A+G    
Sbjct: 186 TGNKWEFLQKVNA-NNKILILNCAEGEPGTCKDREILRHEPHKIIEGCLLAGYAMGCEKC 244

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
            IYVR  F  E  +LQ A+ E Y  GLLG N+   G   DI V  G   Y+ GEETAL+ 
Sbjct: 245 IIYVRNCFYNEACNLQFALAEAYRYGLLGCNACDTGIKFDIQVQRG-DRYLSGEETALVN 303

Query: 181 SLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK 240
            L GK  +PR +PP+    G +  P  V N E++AVVPTILRRGA W++G GR  N GTK
Sbjct: 304 CLMGKLARPRKRPPYLHEQGYFDHPCLVLNTETLAVVPTILRRGAKWFTGLGRNMNFGTK 363

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           LFSI GHV +PCTVEE MS+   E+I+ H GG+ GGW+NLL V PGG S P +      G
Sbjct: 364 LFSICGHVQHPCTVEEEMSMPLREIIDMHAGGVCGGWNNLLGVFPGGLSSPLIGKVGAEG 423

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
            +MDYD L++ GS  GT  +IV+  + D +  + R   
Sbjct: 424 LLMDYDCLQKAGSSFGTGGIIVVSNNCDPLLVMQRSIE 461


>gi|187926810|ref|YP_001893155.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J]
 gi|241665140|ref|YP_002983499.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D]
 gi|187728564|gb|ACD29728.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12J]
 gi|240867167|gb|ACS64827.1| NADH dehydrogenase (quinone) [Ralstonia pickettii 12D]
          Length = 480

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 114/394 (28%), Positives = 196/394 (49%), Gaps = 12/394 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + L+  +  G  D +    +     ++  V AS LRGRGGAGF  G+KW  +    +   
Sbjct: 93  RHLAAYLEVGGGDALALARQMAPHALVALVNASRLRGRGGAGFPAGVKWQAVANEAA-AT 151

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+VVNADE +PG   DR ++  +P  +IE   IA+ A+GA   ++Y+R E+    + L 
Sbjct: 152 KYVVVNADEGDPGAFSDRFLLEDDPFLVIEAAAIAAHAVGARHGYLYLRKEYPVAAQVLS 211

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+++  A+G L          ++ +  G GAYICGEET+LL +LEG + + R +PP   
Sbjct: 212 RALEQARAAGWLAP------AFELELVVGQGAYICGEETSLLNALEGHRPEVRPRPPQIT 265

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT V+NVE++  +P I++ GA+ Y+  G   +RGTKL S++     P   E  
Sbjct: 266 RHGLFGAPTLVHNVETLCAIPWIVKHGAAAYAALGFSGSRGTKLLSLNSLFRRPGLYEVE 325

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  +++++   G+R     L+ ++ GG     +P   +    + Y+ ++ +   +G 
Sbjct: 326 FGITLADIVDQLGQGLR--RGRLIGLMVGGPLAGIVPPALLH-TRLGYEDMQAIDCAVGH 382

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             VI     T I + +  +  F   ESCG+CTPC  GT  +  + +          +   
Sbjct: 383 GGVIAFGDDTPIARIVAEVLRFGARESCGKCTPCHLGTPMLAAMAQ--AAAGGMPIDGSR 440

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411
              +   +   ++C  G   A  ++ + +++   
Sbjct: 441 FNRLIDALAATSLCGHGRGLAEFVRSVQRHYPQE 474


>gi|320104679|ref|YP_004180270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Isosphaera pallida ATCC 43644]
 gi|319751961|gb|ADV63721.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Isosphaera pallida ATCC 43644]
          Length = 571

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 137/426 (32%), Positives = 215/426 (50%), Gaps = 31/426 (7%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKIL--EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
           G  G  +     +  ++ V  +L  E   + +I E++ SGL G GGAG +T  KWS + K
Sbjct: 140 GPTGWQIDPYEGQPRYEAVGLMLDGELSPEKMIQELELSGLFGLGGAGGATHGKWSEVRK 199

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
                  Y+V NADESEP   KDR+++   PH +IEG  +A+  +GA   ++Y+R E+  
Sbjct: 200 EP-GATKYIVCNADESEPAAFKDRELLLRVPHLVIEGMTLAALTVGAEKGYLYIRHEYHD 258

Query: 132 ERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
           +  +++AA+ E    G+LG          ++ V    G YICGE+TALLE++E ++ +PR
Sbjct: 259 QIAAVEAALAEARERGILGQRILGSDRTFELEVFISPGGYICGEQTALLEAMEDRRAEPR 318

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
            +PP P   GL+GCPT +NNVE++A  P I  +G  WY+G G     G +  SISG V  
Sbjct: 319 NRPPQPMKAGLWGCPTVLNNVETLAWTPAIALKGGKWYAGLGVNGATGMRFVSISGDVKR 378

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG-------------- 296
           P   E     T  ELI KH GG++G   ++ A+ P G S   LPA               
Sbjct: 379 PGVYELPFGGTVGELI-KHAGGLKGT-QSVQAIAPSGPSGGFLPARLRVDQVSRKFAERF 436

Query: 297 --------QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348
                    +    +D   ++ +   L + AV+V+    +++        FY++ESCG+C
Sbjct: 437 FTGGRTEMSILDLPLDKPTMRMLDVPLLS-AVVVIGSEANLLDLAKNCLEFYRNESCGKC 495

Query: 349 TPCREGTGWMMRVMERL--VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
            PCR G+  ++ + E L    G    +  + + +++  +   +IC LG  A  P+  L+ 
Sbjct: 496 VPCRIGSQKLVEIAEDLIQHHGAMSPQRAEAIDDLATAMIQTSICGLGQVAPLPLTTLMT 555

Query: 407 NFRPLI 412
            F  L 
Sbjct: 556 YFPNLF 561


>gi|218260406|ref|ZP_03475735.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224534|gb|EEC97184.1| hypothetical protein PRABACTJOHN_01398 [Parabacteroides johnsonii
           DSM 18315]
          Length = 400

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 116/292 (39%), Positives = 165/292 (56%), Gaps = 5/292 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  +++ + ++R  +  + K L E   + +I E+  SGLRGRGG 
Sbjct: 111 FYKKQLRIALRNCGFINPENIDEYIARDGYVALGKALTEMTPESVIKEIMDSGLRGRGGG 170

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    KV S    Y+V NADE +PG   DR I+  +PH+++E   I  +  GA
Sbjct: 171 GFPTGLKWQITRKVKSP-QKYVVCNADEGDPGAFMDRSILEGDPHSIVEAMAINGYCTGA 229

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
               +Y+R E+    E L+ A+ +    GLLG N     +  DI + +GAGA++CGEETA
Sbjct: 230 TKGLVYIRAEYPLAVERLKIAIHQAKEYGLLGDNIFGTDFSFDIEIRYGAGAFVCGEETA 289

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EG +G+  +KPPFP+  G  GCPT VNNVE+ A VP IL +GA W+S  G E ++
Sbjct: 290 LIHSMEGLRGEATVKPPFPSEHGYKGCPTNVNNVETYANVPVILLKGAEWFSSIGTEKSK 349

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
           GTK+F+++G VN    +E  M  T  E +    GG         AV  GG S
Sbjct: 350 GTKVFALAGKVNNVGLIEVPMGTTLRE-VIFGIGGGIKDGKKFKAVQTGGPS 400


>gi|56476981|ref|YP_158570.1| formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum
           aromaticum EbN1]
 gi|56313024|emb|CAI07669.1| Formate dehydrogenase, NAD(P) reducing, beta subunit [Aromatoleum
           aromaticum EbN1]
          Length = 585

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 127/357 (35%), Positives = 184/357 (51%), Gaps = 22/357 (6%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F    KW  +    +  P ++ VN DE EPGT KDR  +  +PH  IEG +IA+  +G  
Sbjct: 236 FPAARKWRTVAAQPA--PRFMAVNIDEGEPGTFKDRHYLETDPHRFIEGMLIAAHVVGID 293

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +IY+R E+   R  L   +D   A+              I +  GAGAY+CGEE+A++
Sbjct: 294 GIWIYIRDEYPALRRLLAEELDRVRAAWPDVP--------SIEIRRGAGAYVCGEESAMI 345

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV----VPTILRRGASWYSGFGREN 235
           ES+EGK+G PRL+PP+ A VGL+G PT  +N+E++      V   L      ++  GR  
Sbjct: 346 ESIEGKRGMPRLRPPYVAEVGLFGRPTLEHNLETLWWVRDIVAPALAGEPGPFASRGRNG 405

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
            +G + FS+SG V  P  V     IT  EL+E+HCGG+      L    PGG+S   LPA
Sbjct: 406 RKGLRSFSVSGRVAKPGVVVTDAGITLRELVEEHCGGM-LPGHELYGYFPGGASGGMLPA 464

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
            ++    +D+D L E G  +G+AA++V  +             F+ HESCGQCTPCR GT
Sbjct: 465 -RLADMPLDFDTLGEYGCFIGSAAIVVFSQHDRARVLAENAMEFFAHESCGQCTPCRVGT 523

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
                +M           +  LL E+   +   +IC LG AA  P+Q +++ F   +
Sbjct: 524 AKAAELM------KQPAWDAALLTELGTVMMDASICGLGQAAPNPMQSVLRFFPHEV 574


>gi|190345480|gb|EDK37372.2| hypothetical protein PGUG_01470 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 314

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 150/250 (60%), Positives = 183/250 (73%), Gaps = 4/250 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +IL+KG  WII+EVK SGLRGRGGAGF 
Sbjct: 63  LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEILQKGDKWIIDEVKKSGLRGRGGAGFP 122

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++   A+ A
Sbjct: 123 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLVTGRAMNA 182

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GLLG N+   GYD D+ +H G GAY+CGEETA
Sbjct: 183 TAAYIYIRGEFYNEANILQGAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYVCGEETA 242

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG  W++ FGRE N 
Sbjct: 243 LIESLEGKAGKPRLKPPFPAAVGLFGRPSTVTNVETVAVAPTICRRGGEWFASFGRERNS 302

Query: 238 GTKLFSISGH 247
           GTKLF ISG 
Sbjct: 303 GTKLFCISGP 312


>gi|146419677|ref|XP_001485799.1| hypothetical protein PGUG_01470 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 314

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 150/250 (60%), Positives = 183/250 (73%), Gaps = 4/250 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIF N+YG  G  L  +   G W    +IL+KG  WII+EVK SGLRGRGGAGF 
Sbjct: 63  LKDQDRIFQNVYGTYGHDLKSAQKMGDWYKTKEILQKGDKWIIDEVKKSGLRGRGGAGFP 122

Query: 62  TGMKWSFMPKVCSDR---PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM     ++   P YLVVNADE EPGTCKDR+I+R +PH L+EGC++   A+ A
Sbjct: 123 SGLKWSFMNPPGWEKNVGPRYLVVNADEGEPGTCKDREIIRKDPHKLVEGCLVTGRAMNA 182

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
             A+IY+RGEF  E   LQ A++E Y +GLLG N+   GYD D+ +H G GAY+CGEETA
Sbjct: 183 TAAYIYIRGEFYNEANILQGAINEAYKAGLLGKNACGSGYDFDVYIHRGMGAYVCGEETA 242

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ESLEGK G+PRLKPPFPA VGL+G P+TV NVE++AV PTI RRG  W++ FGRE N 
Sbjct: 243 LIESLEGKAGKPRLKPPFPAAVGLFGRPSTVTNVETVAVAPTICRRGGEWFASFGRERNS 302

Query: 238 GTKLFSISGH 247
           GTKLF ISG 
Sbjct: 303 GTKLFCISGP 312


>gi|225405648|ref|ZP_03760837.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme
           DSM 15981]
 gi|225042842|gb|EEG53088.1| hypothetical protein CLOSTASPAR_04869 [Clostridium asparagiforme
           DSM 15981]
          Length = 350

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 104/264 (39%), Positives = 157/264 (59%), Gaps = 4/264 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + +  G +  + K+L E   D +I  +  +GLRGRGGA
Sbjct: 88  FYKKQHRIALRNCGVINPEDIEEYIGTGGYQALGKVLTEMTPDEVIQTLLDAGLRGRGGA 147

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW    +  +D   Y+  NADE +PG   DR ++  +PH L+E   IA +AIG+
Sbjct: 148 GFPTGLKWKLCKQNDAD-QKYVCCNADEGDPGAFMDRSVLEGDPHALLEAMAIAGYAIGS 206

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  ++YVR E+    + L  A+ +     LLG N    G+D D+ +  GAGA++CGEETA
Sbjct: 207 NQGYVYVRAEYPIAVDRLTIAIKQAREMELLGKNIFGTGFDFDVDIRLGAGAFVCGEETA 266

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           L+ S+EGK+G+PR +PPFPA  GL+G P+ +NNVE+ A +P I+  G  W++  G E ++
Sbjct: 267 LMTSIEGKRGEPRPRPPFPAQKGLFGKPSILNNVETYANIPQIILNGPEWFASMGTEKSK 326

Query: 238 GTKLFSISGHVNYPCTVEESMSIT 261
           GTK+F++ G +N    VE  M  T
Sbjct: 327 GTKVFALGGKINNTGLVEVPMGTT 350


>gi|298244918|ref|ZP_06968724.1| NADH dehydrogenase (quinone) [Ktedonobacter racemifer DSM 44963]
 gi|297552399|gb|EFH86264.1| NADH dehydrogenase (quinone) [Ktedonobacter racemifer DSM 44963]
          Length = 443

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/421 (26%), Positives = 213/421 (50%), Gaps = 9/421 (2%)

Query: 7   RIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMK 65
           R+         + L+   S G +  ++  L +   + II +V  + LRGRGGAG  TG K
Sbjct: 9   RLLRQQDDRDVRGLAAYRSAGGYSALESALRQNTPNQIIQQVTDARLRGRGGAGRLTGEK 68

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
           W  + +   D   Y++ NA +++  +   R ++ + PH +IEG ++A++A+GA  A+++ 
Sbjct: 69  WRVV-RSTDDDQKYVICNAYDADSRSLAARLLLEYNPHQVIEGIILAAYAVGASEAYLFT 127

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           R  +    +++QAA+ E   + L+G +     +   I V      +I GEET  + +++G
Sbjct: 128 RSLYKEGIQTVQAALQEALEANLVGRDILGTDFSCTISVVAVDLGFIGGEETVQIAAIKG 187

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           ++G P  +PPFPA  GL+  PT +N+VE++A VP I+R G   ++  G     G+K+ ++
Sbjct: 188 RRGMPEQRPPFPAQYGLWDKPTAINSVETLANVPVIVREGPGAFAQTGTSITGGSKILTV 247

Query: 245 SGHVNY--PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
            G      PC +E     T  +++ +   G+    +++  V+ GG+    LP   +   I
Sbjct: 248 YGAGAESEPCVIEVPFGTTIRDILTRA--GVNASANDIRGVVVGGAEGGALPPS-LLDTI 304

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            DYD ++  G+ +G+  + V+   T ++      S +   ESCG+C PCR G   +  ++
Sbjct: 305 FDYDPIEAAGAIVGSGVIEVLPVDTCMVAWAMERSRYLSKESCGKCVPCRLGVKRITGIL 364

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           E +V  +    ++D+L E ++ +   ++C  G  A  P++   + +       + +   C
Sbjct: 365 EGVVSDLGVNGDLDVLDEFAQYVPNGSLCGFGVQATNPLKTAKRYWPEHFTMHVQELQ-C 423

Query: 423 N 423
            
Sbjct: 424 P 424


>gi|269836783|ref|YP_003319011.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745]
 gi|269786046|gb|ACZ38189.1| NADH dehydrogenase (quinone) [Sphaerobacter thermophilus DSM 20745]
          Length = 442

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 122/399 (30%), Positives = 187/399 (46%), Gaps = 13/399 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +SL +  ++G +    +      + + N + ASGLRGRGGA F TG KW  +    +  P
Sbjct: 30  ESLMEYRAQGGYAP--EGWAWSPEELRNLIAASGLRGRGGAAFPTGRKWHGVAAQPA--P 85

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             ++VNA ESEP + KDR ++   PH ++EG ++A+ AI A    +Y+       R SL+
Sbjct: 86  RVVLVNAAESEPASAKDRTLLLRRPHLVLEGALLAARAIDAREIVLYLHATATEVRASLE 145

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+ E  A G+              +      Y+ GE +A +    G   +P  KPP P+
Sbjct: 146 LALRELRADGV--------QTPHFRIVTAPPGYVAGESSAAVRRANGGPAKPTFKPPRPS 197

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             G+   PT V NVE++  VP I R GA+W    G  N  GT L ++SG VN P   E  
Sbjct: 198 ERGVGKRPTLVQNVETLGNVPLIARHGANWLREVGAPNLPGTLLVTLSGAVNRPGVYEVP 257

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             +    ++E+  GG+ GG      ++ G  +    P    +GA ++ + L+  G  LG 
Sbjct: 258 SGVPLRHIVEELGGGVIGGASIQAMLVGGYFAGWLGPDALEQGARLEPESLRAWGVSLGA 317

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A++V+      +     L  F+  ES  QC  C  GT  M  V  RL++G A   E D 
Sbjct: 318 GAIVVVPNWICGLAQAAWLMRFFADESAQQCGTCLYGTRAMADVFARLLRGTASPSERDR 377

Query: 378 LYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           L+  ++ +  GR  C   D AA   +  ++ F   I   
Sbjct: 378 LHLWAERMLPGRGACGHLDGAAIAARTALEVFADDIRRH 416


>gi|291436113|ref|ZP_06575503.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
 gi|291339008|gb|EFE65964.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
          Length = 308

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 168/306 (54%), Gaps = 9/306 (2%)

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIV 163
                 IA++A GAH  ++Y+RGE+ R    ++ AVD   A GLLG +    GY  DI +
Sbjct: 4   WRYALTIAAYATGAHTGYLYLRGEYPRALHRMRHAVDRARARGLLGDDVLGQGYAFDIEI 63

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
             GAGAY+CGEETAL  S+EG +G+PR KPPFP   GL+G PT  NNVE++  V  IL R
Sbjct: 64  RRGAGAYVCGEETALFNSIEGYRGEPRSKPPFPVEKGLFGKPTVENNVETLVNVLPILTR 123

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
           GA  Y+  G   + GTKLF +SG V  P   E     T   L+E          + L AV
Sbjct: 124 GAPAYAATGTPGSTGTKLFCVSGSVERPGVYEVPFGTTLGALLEPAG-----VREGLRAV 178

Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
           + GG++   + A ++    + ++G +E G+ LG+  V+  D +  + + + R++ F++ E
Sbjct: 179 LLGGAAGGFVRADEL-DIPLTFEGTREAGTTLGSGVVMAFDDTVPLPRLLLRIARFFRDE 237

Query: 344 SCGQCTPCREGTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
           SCGQC PCR GT      + R+V+  G     +I LL EV + +   +IC LG  A   +
Sbjct: 238 SCGQCVPCRVGTVRQEEALHRIVERTGADAAGDIALLREVGRAMRDASICGLGQTAWNAV 297

Query: 402 QGLIKN 407
           +  I  
Sbjct: 298 ESAIDR 303


>gi|320450369|ref|YP_004202465.1| respiratory chain oxidoreductase [Thermus scotoductus SA-01]
 gi|320150538|gb|ADW21916.1| respiratory chain oxidoreductase [Thermus scotoductus SA-01]
          Length = 490

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 206/389 (52%), Gaps = 36/389 (9%)

Query: 20  LSDSMSRGHWDNVDKILE--KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           L    + G    + + L+     + I+  V+ +GL GRGGA F   +K   + +   + P
Sbjct: 131 LDRYEALGGLVFLRRALKNLLAPEAILEAVEEAGLLGRGGAAFPAHIKMRAVAR--GEPP 188

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLVVNADESEPG  KDR ++ H P  ++EG ++A+ A+GA   F+YVR EF      L+
Sbjct: 189 RYLVVNADESEPGNFKDRYLLEHHPFLVLEGTLLAALAVGASQVFLYVRDEFEAAILGLE 248

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+ +   +GLL         V   V    G YICGEETALLES+EGK+ +PRLKPPFP 
Sbjct: 249 KAIHQLEEAGLL--------PVPTQVFTSGGLYICGEETALLESMEGKRAEPRLKPPFPV 300

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT V NVE++A +P ILR G       G    +  KLFSI+G V  P   E  
Sbjct: 301 ERGLWGRPTLVQNVETLANLPLILREGP------GTWREKEPKLFSITGDVARPGLYELP 354

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +  + ++ + K  G      + L AV+ GG++        +      +    +    LG 
Sbjct: 355 LGTSLEDALRKAEG----EPEGLKAVLLGGAAG-------VFTRDFAFPLRYKGRLPLGA 403

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
            A++   +  D+ + +  L+ F++ ESCG+C PC  GT   + ++ R      ++R  DL
Sbjct: 404 GAIVAFGKEVDLWEVLLGLAEFFREESCGKCFPCPLGTAVQVEMVRR------RERNRDL 457

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           ++ + + ++G ++C LG +A W  Q L++
Sbjct: 458 VHHLGQALKG-SLCGLGQSAYWAYQSLLE 485


>gi|289767858|ref|ZP_06527236.1| NADH:ubiquinone oxidoreductase, NADH-binding protein [Streptomyces
           lividans TK24]
 gi|289698057|gb|EFD65486.1| NADH:ubiquinone oxidoreductase, NADH-binding protein [Streptomyces
           lividans TK24]
          Length = 312

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/313 (37%), Positives = 172/313 (54%), Gaps = 9/313 (2%)

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLG 156
           M  +P+ L+E   IA++A GAH  ++Y+RGE+ R    L  A+++    GLLG +    G
Sbjct: 1   MEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTHAIEQARTRGLLGDDVLGQG 60

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           Y  DI +  GAGAYICGEETAL  S+EG++G+PR KPPFP   GL+G PT  NNVE++  
Sbjct: 61  YAFDIEIRRGAGAYICGEETALFNSIEGRRGEPRSKPPFPVEKGLFGKPTVENNVETLVN 120

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V  IL  GA  Y+  G   + G KLF +SG V  P   E     T  EL+          
Sbjct: 121 VLPILTMGAEAYAAIGTPTSTGPKLFCVSGTVARPGVYELPFGATLGELLALAG-----V 175

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            DNL AV+ GG++   +   ++    + ++G +E G+ LG+  V+  D +  + + + R+
Sbjct: 176 RDNLRAVLLGGAAGGFVRPDEL-DIPLTFEGTREAGTTLGSGVVMAFDDTVPLPRLLLRI 234

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICALG 394
           + F++ ESCGQC PCR GT      + R+    G A   +I LL EV + +   +IC LG
Sbjct: 235 AEFFRDESCGQCVPCRVGTVRQEEALHRIADRTGAAAADDIALLREVGRAMRDASICGLG 294

Query: 395 DAAAWPIQGLIKN 407
             A   ++  I  
Sbjct: 295 QTAWNAVESAIDR 307


>gi|237800539|ref|ZP_04589000.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023399|gb|EGI03456.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 298

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 110/281 (39%), Positives = 155/281 (55%), Gaps = 6/281 (2%)

Query: 140 VDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           + E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KPPFPA 
Sbjct: 1   MAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAA 60

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTKLFSISGHVNYPCTVEE 256
           VG++G PT VNNVE++  VP I+  G  WY    RE +   GTKL   SG V  P   E 
Sbjct: 61  VGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTKLMGFSGKVKNPGLWEL 120

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              +   EL E + GG+R G+  L    PGG+    L    +  A M   G+ ++G+ +G
Sbjct: 121 PFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-DAQMYAGGIAKVGTRMG 178

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           T   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++++  +  G  Q  +I+
Sbjct: 179 TGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVKMLRAIEMGQGQPGDIE 238

Query: 377 LLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 239 TLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 279


>gi|91202933|emb|CAJ72572.1| similar to NADH dehydrogenase I chain F (1st module) EC: 1.6.5.3
           [Candidatus Kuenenia stuttgartiensis]
          Length = 675

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 120/403 (29%), Positives = 190/403 (47%), Gaps = 19/403 (4%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           S  + +     + V K      + I+ E+ ASGLRGRGGAGF TG+KW  + +       
Sbjct: 239 SYEEYLCATGENAVHKARAMSPEQIVTELLASGLRGRGGAGFPTGVKWRTLVRHTCP-TR 297

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
           Y+V NA E EPGT KDR ++R  P+  IEG +IA+ A+ A   +I ++  F    E ++ 
Sbjct: 298 YVVCNAAEGEPGTFKDRYLLRKNPYATIEGMLIAAHAVNAAGIYIALKRSFGPSIERVRQ 357

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+ E  + GL+         ++I +  G   Y+ GEE ALL  +EG    PR     P  
Sbjct: 358 AISEMASKGLMD-------GIEIKIVEGPEEYLFGEEKALLNVVEGFPPMPREAYCPPYE 410

Query: 199 VGLYGCPTTVN-----NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           +GL+  P + N     N +++A VP+I+R G + +   G  +  GT +F++ G V  P  
Sbjct: 411 IGLFATPNSPNPALLDNAQTLAHVPSIVRHGGASFRRLGTHDTSGTLIFTVCGDVQRPGV 470

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E    IT  +L     GG           + G +    L          ++D  + +GS
Sbjct: 471 YECEAGITLRKLFYDVAGG-PHTGRQFKVALSGVACGVILADR--FDTPTEFDAFQMIGS 527

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           GLG+A  IV+D +  I +    ++ F   ESC QC  C+ G       ++ L++ +    
Sbjct: 528 GLGSAGFIVLDNAASIPRVTQAVARFLYVESCNQCPACKAGLRTASHGIDELLQHLHLHD 587

Query: 374 E---IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           +   +D + E + +      C L    A  I GL+++FR   E
Sbjct: 588 DRAGLDWIMEGAHSAPQANRCFLPAQGAKLIPGLVQSFREEFE 630


>gi|300697561|ref|YP_003748222.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           CFBP2957]
 gi|299074285|emb|CBJ53832.1| NADH-quinone oxidoreductase subunit F [Ralstonia solanacearum
           CFBP2957]
          Length = 451

 Score =  298 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 120/395 (30%), Positives = 192/395 (48%), Gaps = 12/395 (3%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + L      G  D +          ++N V+ S LRGRGGAGF  G+KW       S R 
Sbjct: 64  RDLPTYRRGGGGDALAMAQAMAPQALVNMVRDSRLRGRGGAGFPAGIKWQATA-NESART 122

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+VVNADE +PG   DR ++  +P  LIE   IA+ A+GAH  +IY+R E+      L 
Sbjct: 123 KYVVVNADEGDPGAFSDRFLLEDDPFRLIEAVAIAAHAVGAHGGYIYLRKEYPAAARVLA 182

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A++E  A+G L           + +  G GAY+CGEET+LL +LEG++ + R +PP   
Sbjct: 183 RALEEARAAGWLPP------AFALELVVGRGAYLCGEETSLLNALEGRRPEVRPRPPQIT 236

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT V+NVE++  +P I+  GA+ Y+  G   +RGTKL S++     P   E  
Sbjct: 237 RQGLFGAPTLVHNVETLCAIPWIVTHGAAAYAALGFSQSRGTKLLSLNSLFRRPGLYEAE 296

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
             IT  +++E+   G+      L  ++ GG     +P   +    + Y+ ++ +   +G 
Sbjct: 297 FGITLADIVERLGQGL--HRGRLKGLMVGGPLAGIVPPELLH-TRLGYEEMQAIDCAVGH 353

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
             VI     T + + +  +  F   ESCG+CTPC  G   +  +      G     +   
Sbjct: 354 GGVIAFADDTPVARIMAEVLRFGARESCGKCTPCHLGAPILAAMAAAAADGG--PIDRGR 411

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
              +   +   ++C  G   A  +Q + +++R  +
Sbjct: 412 WQRLVTALAQTSLCGHGRGLAEFVQSVQRHYRSEL 446


>gi|325968336|ref|YP_004244528.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707539|gb|ADY01026.1| NADH-quinone oxidoreductase, subunits E and F [Vulcanisaeta
           moutnovskia 768-28]
          Length = 516

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 124/409 (30%), Positives = 196/409 (47%), Gaps = 20/409 (4%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVK-ASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + L   ++R  +   +K L +G  ++I E+    GL G G       +         +DR
Sbjct: 125 EPLDKYIARSGYRYFEKFLNEGNKFLILELLVKVGLLGGGALTRLKALA------SNADR 178

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
           P YL+VN  E EPG  KDR IM    H L+EG ++ S A+      I V   F   +  +
Sbjct: 179 PKYLIVNGHEGEPGGFKDRLIMERNTHQLLEGALLLSLALNVDEVIIAVNERFRNAKAVI 238

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           + A+DE      L +   L     I V      YI GEETAL+ S+EG +G+PRL+PP P
Sbjct: 239 ERALDELR--TFLTNRDLLSKLPPITVSLIGSPYIVGEETALINSIEGGRGEPRLRPPDP 296

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              GL+G PT V NVE  A +P +L          G+E     K F ++G V+ P    E
Sbjct: 297 TEAGLFGKPTAVINVEVAAAIPILLSN-----YYEGKE-ITIEKYFCVTGDVDRPGLYRE 350

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            ++I  +EL+ K         +N+ AV  GG S   + + +++  +   +  +++G  LG
Sbjct: 351 KLTIGLNELLVKAGA----KEENVKAVFVGGVSSGLVHSSRIKVRLTPEEA-RKLGVFLG 405

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +I +  S  I+  +  +  F+ HESCG+C PCR GT  ++ ++ER+  G A + ++ 
Sbjct: 406 PGVIIALSNSRCIVDVMLEVERFFAHESCGRCEPCRLGTRELVNILERISNGKANEEDLK 465

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
               V+K +   ++C LG +A   +   +  FR   EE +    R    
Sbjct: 466 WAESVAKTMMDTSLCGLGMSAGKVLLDALSQFRDEFEEHVKGVCRAGVH 514


>gi|116672201|ref|YP_833134.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24]
 gi|116612310|gb|ABK05034.1| NADH dehydrogenase (quinone) [Arthrobacter sp. FB24]
          Length = 566

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 120/369 (32%), Positives = 180/369 (48%), Gaps = 9/369 (2%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + I+  V+A+ LRGRGGAGF    KW       +  P  +V N DE +PG+  DR +M
Sbjct: 197 TPEDILLRVEAAQLRGRGGAGFRAAAKWRAALDHPA--PRVVVANGDEGDPGSYADRLLM 254

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGY 157
             + H ++EG V+A FA+GA    ++VR E+      L+ A+ E   +G LG +    G+
Sbjct: 255 EQDAHRVLEGLVLACFAVGATTGIVFVRSEYPLAAARLRNALHEARRAGHLGPDIAGSGF 314

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
            +++ V  GAG+Y+ GEETALL  L G +G  R +PPFP   G +G PT VNNVE++  V
Sbjct: 315 SLEVRVAEGAGSYVSGEETALLNGLAGLRGVVRPRPPFPTERGFHGRPTVVNNVETLCAV 374

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           P I++ G   Y+  G  +  GT +  +S     P   E  +      ++E+  GG+RGG 
Sbjct: 375 PWIVQHGGPAYAALGTSDEAGTVIACLSERFLRPGAYEVEIGTPVRRIVEELGGGLRGGA 434

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                 I G       P        +    L   G+ LG A ++  D      + +  L 
Sbjct: 435 TLRAIQIGGPLGGFLGPDD--LDVPLSDTALARHGAALGHAGIVAFDDRLSGEQVLRNLW 492

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            F   ESCGQC+PCR GT W  R +  L        E     +V + +   ++CA G   
Sbjct: 493 DFAAAESCGQCSPCRVGT-WRGRALAELPDAPDVGSERG---DVLRTMAAGSLCAFGRRV 548

Query: 398 AWPIQGLIK 406
              ++ L++
Sbjct: 549 PAAVRSLVR 557


>gi|168702047|ref|ZP_02734324.1| NADH dehydrogenase (quinone) [Gemmata obscuriglobus UQM 2246]
          Length = 686

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 207/486 (42%), Gaps = 94/486 (19%)

Query: 12  LYGLQGKSLSDSMS----RGHWDNVDKILEKGRDWI---------------INEVKASGL 52
           +YG QG    D  +      +   + + L      +               + E+K + L
Sbjct: 192 IYGRQGWP-RDYRAVKRFTDYLARLIRPLVPPPRELGGKDLETYVQRFHPLLWELKTANL 250

Query: 53  RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
            G GGAG     KW  + +       Y+V N DESEPGT KDR+I+   PH ++EG ++A
Sbjct: 251 LGMGGAGAPAYQKWLDVWQQP-GNEKYIVCNGDESEPGTFKDREILLRMPHLVVEGVILA 309

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYI 171
               GA    IYVR E+  +  +L+  +      G  G N    G +  + V    G YI
Sbjct: 310 GLMTGATSGHIYVRHEYFEQIHALKEEIKRAQELGACGPNIFGSGRNFPVEVFESPGGYI 369

Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
           CGE++AL+E++E ++GQPR +PP  +  G    PT VNNVE++A  P I+  G   Y   
Sbjct: 370 CGEQSALIEAMEDRRGQPRNRPPELSANGFRDKPTVVNNVETLAWAPGIILFGGDKYEMG 429

Query: 232 G-------RENNRGTKLFSISGHVNYPCTVEESMSITFDELI--EKHCGGIRGGWDNLLA 282
           G       +    G +LFS+SG V  P   E ++ +T  EL   +K+CGGI G    L A
Sbjct: 430 GWRLATDPKIKFGGRRLFSVSGDVARPGVYEVAIGLTLGELFNGDKYCGGITG---PLRA 486

Query: 283 VIPGGSSVPCLPAGQMRGA----------------------------------------- 301
           V   G S   +PA                                               
Sbjct: 487 VAASGPSGGLVPAKLPVDPKFDAKKRADAVARIRDRSAQDADFMEWFLNTHLPLGATELD 546

Query: 302 ----IMDYDGLKEMGSGLGT-------AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
                +D +  + +   L         AA+ V     D++      + FY++ESCG+C P
Sbjct: 547 VLKIPLDLNFFRHLNGALRLPVEAMLGAAITVYAGDVDVLDQAVNYTQFYRNESCGKCVP 606

Query: 351 CREGTGWMMRVMERLVK----GIAQKREIDLL----YEVSKNIEGRTICALGDAAAWPIQ 402
           CR G+  ++++ E L+K    G     ++  +     E++K ++  +IC LG  A  P+ 
Sbjct: 607 CRLGSQKLVQIGEGLLKSRRAGRLPADDLAAIKKDVKEITKTLQLTSICGLGYVAPIPLA 666

Query: 403 GLIKNF 408
             ++ F
Sbjct: 667 TALEYF 672


>gi|194374173|dbj|BAG62399.1| unnamed protein product [Homo sapiens]
          Length = 335

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 151/236 (63%), Positives = 178/236 (75%)

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G  G P        N    G PTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+
Sbjct: 89  GGAGFPTGLKWSFMNKPSDGRPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFN 148

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P       +M
Sbjct: 149 ISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLM 208

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +VM 
Sbjct: 209 DFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMA 268

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 269 RFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 324



 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/92 (54%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLV-VNADESEPGTC 92
           TG+KWSFM K    RP  +  V      P  C
Sbjct: 95  TGLKWSFMNKPSDGRPTTVANVETVAVSPTIC 126


>gi|297267279|ref|XP_002799509.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like [Macaca mulatta]
          Length = 335

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 152/236 (64%), Positives = 178/236 (75%)

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G  G P        N    G PTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+
Sbjct: 89  GGAGFPTGLKWSFMNKPSDGRPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFN 148

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           ISGHVN+PCTVEE MS+   ELIEKH GG+ GGWDNLLAVIPGGSS P +P       +M
Sbjct: 149 ISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLM 208

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  WM +VM 
Sbjct: 209 DFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMA 268

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           R V+G AQ  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ ++
Sbjct: 269 RFVRGDAQPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRF 324



 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/92 (53%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLV-VNADESEPGTC 92
           TG+KWSFM K    RP  +  V      P  C
Sbjct: 95  TGLKWSFMNKPSDGRPTTVANVETVAVSPTIC 126


>gi|225164244|ref|ZP_03726517.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
 gi|224801149|gb|EEG19472.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
          Length = 331

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 122/275 (44%), Positives = 162/275 (58%), Gaps = 6/275 (2%)

Query: 4   DQDRIFTNLY--GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
            Q RI             +   +  G ++ + + + +  + + +EVK SG+RGRGGAGF 
Sbjct: 19  QQRRIIFKHIDEAAYSNDIDCYLRNGGYEILKRAVARKPEDLRDEVKKSGIRGRGGAGFP 78

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
            G+KW  + +  S +P YL+VNADESEPGT KDR I+  +PH LIEG +I+ FA     A
Sbjct: 79  CGVKWGLVDR-KSGKPIYLIVNADESEPGTFKDRYIIHQDPHQLIEGTIISCFANDVKQA 137

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGE       L+ A+ E  A   +G N    GY  +I VH GAGAYICGEET L+E
Sbjct: 138 YIYIRGEMPEGARILERAIAEARAKNFVGPNILGTGYSCEIYVHRGAGAYICGEETGLIE 197

Query: 181 SLEGKKGQPRLKPP-FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           SLEGK+  PR+KPP FPA +GLY CPT VNNVE++  V   +  G   Y+  G  NN GT
Sbjct: 198 SLEGKRANPRIKPPYFPAVLGLYQCPTIVNNVETLCHVKHAIDIGGDNYAKIGTPNNTGT 257

Query: 240 KLFSISGHVNYPCTVEESMS-ITFDELIEKHCGGI 273
           ++F +SGHV  P   E     IT  +L+   CGG 
Sbjct: 258 RIFCVSGHVQRPGYYEFEAGKITMGQLLNDVCGGP 292


>gi|254818614|ref|ZP_05223615.1| hypothetical protein MintA_01759 [Mycobacterium intracellulare ATCC
           13950]
          Length = 434

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/422 (26%), Positives = 187/422 (44%), Gaps = 30/422 (7%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65
            R+ +   G +   L+     G +  +        D ++ EV+ASGL GRGGA F   +K
Sbjct: 18  PRLLSEQGGRED--LAAYRQAGGYHPL-----TDTDALLGEVEASGLVGRGGAAFPLAVK 70

Query: 66  WSFMPKV----CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
              + +            +V N +E EP + KDR ++R+ PH +++G  +A+  + A  A
Sbjct: 71  LRTVRENGRLMADTGGPVVVANGEEGEPASIKDRWLLRNRPHLVLDGLRLAATLVAADRA 130

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLES 181
           ++YV         S++ A+      G LG ++     V I +      Y+ GEETA + +
Sbjct: 131 YLYVSD--AESAHSVETAL------GELGPDT---LGVPITMLTVPAGYVAGEETAAVRA 179

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           + G   +P  KPP P   G+   PT V+NVE++A +P + R G++ +   G   + GT L
Sbjct: 180 INGGPAKPTDKPPRPFEAGVDDRPTLVSNVETLANLPYLQRHGSAAFRAQGTPLSPGTFL 239

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
            +I+G    P   E    + F EL+  H        D +   + GG     L    +   
Sbjct: 240 ATITGAGRPPVLYELPHGLPFTELLALHG----VPADQVRGALMGGYFAGLLNRSVLETT 295

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            +D++ ++ +GSGLG  A+ V+      +     +  ++  E+ GQC  C  GT  M   
Sbjct: 296 -LDHETMRRVGSGLGCGAISVITD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAA 353

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
              L  G A   +++ L   S  + GR  CA  DAA      L+  F   +   +D    
Sbjct: 354 AGALRDGAATTEDVERLRRWSVVLRGRGACATLDAATNVAASLLDQFPDEVGAHVD--GA 411

Query: 422 CN 423
           C 
Sbjct: 412 CP 413


>gi|240170417|ref|ZP_04749076.1| hypothetical protein MkanA1_13985 [Mycobacterium kansasii ATCC
           12478]
          Length = 431

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/408 (27%), Positives = 187/408 (45%), Gaps = 22/408 (5%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            + + ++    +G +  +        D +++E++++GL GRGGA F  G+K   + +   
Sbjct: 25  REPEDIAAYREQGGYRPLADA-----DTLLHEIESAGLLGRGGAAFPLGVKLRAVRRNGR 79

Query: 75  DRPHYLVV-NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                +VV N +E EP + KDR ++R+ PH +++G  +A+  +GA   ++YV        
Sbjct: 80  AAGGAVVVANGEEGEPTSIKDRWLLRNRPHLVLDGLRLAATIVGAKRGYVYVSDPDAARG 139

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
                      A   LGS++  G  V I V      Y+ GEETA + ++ G   +P  KP
Sbjct: 140 --------AEAALAELGSDTLGG--VGISVWTVPPGYVAGEETAAVRAINGGPAKPTDKP 189

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P P  VG+ G PT V+NVE++A +P + +RG+S +   G  ++ GT L +++G    P  
Sbjct: 190 PRPYEVGVRGRPTLVSNVETLANLPYLQQRGSSAFRTQGTPSSPGTFLATVAGANRPPVL 249

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E    + F EL+  H        + +   + GG     L    +    +D++ ++  GS
Sbjct: 250 YELPHGLRFTELLALHG----VSSEQVRGTLMGGYFAGLLNRSVL-DTTLDHETMRRAGS 304

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           GLG  A+ V+      +     +  ++  E+ GQC  C  GT  M  V   L    A   
Sbjct: 305 GLGCGAISVITD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAVASALRDSAATPE 363

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           ++D L   S  + GR  CA  DAA      L+  F   +   +    R
Sbjct: 364 DVDRLRRWSVVLRGRGACATLDAATNVAGTLLGQFPDEVARHLSGDCR 411


>gi|41406836|ref|NP_959672.1| hypothetical protein MAP0738c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395186|gb|AAS03055.1| hypothetical protein MAP_0738c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 436

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 181/404 (44%), Gaps = 25/404 (6%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           + L+     G +  +        D +++EV+ASGL GRGGA F  G+K   +       P
Sbjct: 29  EDLAAYRGLGGYRPLA-----DGDQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAP 83

Query: 78  H----YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                 +V N +E EP + KDR ++R+ PH +++G  +A+  +GA   ++YV        
Sbjct: 84  RAGGTVVVANGEEGEPASIKDRWLLRNRPHLVLDGLRLAAAVVGAERGYVYVSD--PEAA 141

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            S+++A+ E     L G        V + +      Y+ GEETA + +L G   +P  KP
Sbjct: 142 HSVESALGELDPDTLGG--------VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKP 193

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P P   G+   PT V+NVE++A +P +   GAS +   G   + GT L +ISG    P  
Sbjct: 194 PRPFEAGVGDRPTLVSNVETLANLPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVL 253

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E      F EL+  H        D +   + GG     L    ++   +D++ ++  GS
Sbjct: 254 YELVHGTPFTELLALHG----VSADAVRGALMGGYFAGLLNRSVLQTT-LDHETMRRFGS 308

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           GLG  A+ V+      +     +  ++  E+ GQC  C  GT  M      L  G A   
Sbjct: 309 GLGCGAISVLTD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTE 367

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++D L   S  + GR  CA  DAA      L+  F   +   +D
Sbjct: 368 DVDRLRRWSVLLRGRGACATLDAATNVAFSLLDQFPDDVTAHLD 411


>gi|7709907|gb|AAB29698.2| NADH:ubiquinone oxidoreductase flavoprotein 1 subunit [Homo
           sapiens]
          Length = 257

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 163/297 (54%), Positives = 194/297 (65%), Gaps = 41/297 (13%)

Query: 54  GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113
           GRGGAGF TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++  
Sbjct: 1   GRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGG 60

Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYIC 172
            A+ A  A+IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYIC
Sbjct: 61  RAMAARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYIC 120

Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232
           GEETAL+ES+EGK+G+PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFG
Sbjct: 121 GEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFG 180

Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
           RE N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH G  R                  
Sbjct: 181 RERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGTDR------------------ 222

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
            P                                    KAI RL  FYKH SCGQCT
Sbjct: 223 -PGHSCGDR---------------------HGPLDGHRKAIARLIEFYKHASCGQCT 257


>gi|254773815|ref|ZP_05215331.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 436

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 112/404 (27%), Positives = 180/404 (44%), Gaps = 25/404 (6%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK----VC 73
           + L+     G +  +        + +++EV+ASGL GRGGA F  G+K   +        
Sbjct: 29  EDLAAYRGLGGYRPLA-----DGEQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAP 83

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                 +V N +E EP + KDR ++R+ PH +++G  +A+  +GA   ++YV        
Sbjct: 84  GAGGTVVVANGEEGEPASIKDRWLLRNRPHLVLDGLRLAAAVVGAERGYVYVSD--PEAA 141

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            S+++A+ E     L G        V + +      Y+ GEETA + +L G   +P  KP
Sbjct: 142 HSVESALGELDPDTLDG--------VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKP 193

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P P   G+   PT V+NVE++A +P +   GAS +   G   + GT L +ISG    P  
Sbjct: 194 PRPFEAGVGDRPTLVSNVETLANLPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVL 253

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E +    F EL+  H        + +   + GG     L    ++   +D++ ++  GS
Sbjct: 254 YELAHGTPFTELLALHG----VSANAVRGALMGGYFAGLLNRSVLQTT-LDHETMRRFGS 308

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           GLG  A+ V+      +     +  ++  E+ GQC  C  GT  M      L  G A   
Sbjct: 309 GLGCGAISVLTD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTE 367

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +D L   S  + GR  CA  DAA      L+  F   +   +D
Sbjct: 368 GVDRLRRWSVLLRGRGACATLDAATNVAASLLDQFPDDVTAHLD 411


>gi|145223072|ref|YP_001133750.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium gilvum PYR-GCK]
 gi|145215558|gb|ABP44962.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Mycobacterium gilvum PYR-GCK]
          Length = 430

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/402 (28%), Positives = 182/402 (45%), Gaps = 22/402 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-SDR 76
           ++L++  + G +             +++E+  +G+ GRGGA F   +K + +        
Sbjct: 29  ETLAEYRAAGGYVA-----HDDPATLLDEIDRAGVLGRGGAAFPLAVKLTTVRSASLRGV 83

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
              LV N +E EP + KDR ++R+ PH +++G  +A+  IGA  A +Y+  E       +
Sbjct: 84  DTVLVANGEEGEPASVKDRWLLRNRPHLVLDGLRLAARIIGARHAHVYLSDERAEGA--V 141

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           QAA+ E     L G        V + V      Y+ GEETA + ++ G   +P  KPP P
Sbjct: 142 QAALAETTPDLLDG--------VTVSVRRVEAGYVAGEETAAVRAINGGPAKPTDKPPRP 193

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              G+ G PT V NVE++A +P + R GA  Y   G + + GT L +++G    P   E 
Sbjct: 194 FEEGVGGLPTAVCNVETLANLPYVQRHGADEYRRIGTDGSPGTFLATLTGGGIAPGLYEL 253

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              IT  E+I  H        + +   + GG     L   ++  + +D++ L+ +GSGLG
Sbjct: 254 PFGITAGEVIALHG----IPAERVRGALMGGYFAGLL-DRRVLDSTLDHEALRALGSGLG 308

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
             AV V+      +     +  +Y  E+  QC  C  GT  M    E L  G A   ++ 
Sbjct: 309 CGAVSVLTEE-CPVAVGASVLAYYDRENADQCGSCFNGTAAMAAAAEALRDGSADADDLA 367

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            L   S+ + GR  CA  DAA      ++  F   +    D 
Sbjct: 368 RLERWSQVLRGRGACATLDAACNIAASMLALFADDVARHADN 409


>gi|315443529|ref|YP_004076408.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Mycobacterium sp. Spyr1]
 gi|315261832|gb|ADT98573.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Mycobacterium sp. Spyr1]
          Length = 426

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/402 (28%), Positives = 182/402 (45%), Gaps = 22/402 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC-SDR 76
           ++L++  + G +             +++E+  +G+ GRGGA F   +K + +        
Sbjct: 25  ETLAEYRAAGGYVA-----HDDPATLLDEIDRAGVLGRGGAAFPLAVKLTTVRSASLRGV 79

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
              LV N +E EP + KDR ++R+ PH +++G  +A+  IGA  A +Y+  E       +
Sbjct: 80  DTVLVANGEEGEPASVKDRWLLRNRPHLVLDGLRLAARIIGARHAHVYLSDERAEGA--V 137

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           QAA+ E     L G        V + V      Y+ GEETA + ++ G   +P  KPP P
Sbjct: 138 QAALAETTPDLLDG--------VTVSVRRVEAGYVAGEETAAVRAINGGPAKPTDKPPRP 189

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              G+ G PT V NVE++A +P + R GA  Y   G + + GT L +++G    P   E 
Sbjct: 190 FEEGVGGLPTAVCNVETLANLPYVQRHGADEYRRIGTDGSPGTFLATLTGGGIAPGLYEL 249

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              IT  E+I  H        + +   + GG     L   ++  + +D++ L+ +GSGLG
Sbjct: 250 PFGITAGEVIALHG----IPAERVRGALMGGYFAGLL-DRRVLDSTLDHEALRALGSGLG 304

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
             AV V+      +     +  +Y  E+  QC  C  GT  M    E L  G A   ++ 
Sbjct: 305 CGAVSVLTEE-CPVAVGASVLAYYDRENADQCGSCFNGTAAMAAAAEALRDGSADADDLA 363

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            L   S+ + GR  CA  DAA      ++  F   +    D 
Sbjct: 364 RLERWSQVLRGRGACATLDAACNIAASMLALFADDVARHADN 405


>gi|289679201|ref|ZP_06500091.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae
           FF5]
          Length = 246

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/247 (45%), Positives = 147/247 (59%), Gaps = 4/247 (1%)

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KW  MPK  S    YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A
Sbjct: 1   GFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKA 60

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           +  +I++RGE++   + L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETA
Sbjct: 61  YRGYIFLRGEYVTAAKHLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETA 120

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN- 236
           L+ SLEG++  PR KPPFPA VG++G PT VNNVE++  VP I+  G  WY    RE + 
Sbjct: 121 LINSLEGRRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSE 180

Query: 237 -RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
             GTKL   SG V  P   E    +   EL E + GG+R G+  L    PGG+    L  
Sbjct: 181 DHGTKLMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLP 239

Query: 296 GQMRGAI 302
             +   +
Sbjct: 240 EHLDAPL 246


>gi|118463353|ref|YP_880187.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein
           [Mycobacterium avium 104]
 gi|118164640|gb|ABK65537.1| respiratory-chain NADH dehydrogenase 51 kd subunit family protein
           [Mycobacterium avium 104]
          Length = 436

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 114/404 (28%), Positives = 181/404 (44%), Gaps = 25/404 (6%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV----C 73
           + L+     G +  +        + +++EV+ASGL GRGGA F  G+K   +        
Sbjct: 29  EDLAAYRGLGGYRPLAA-----GEQLLSEVEASGLVGRGGAAFPLGVKLRTVRDNGRAAA 83

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                 +V N +E EP + KDR ++R+ PH +++G  +A+  +GA   ++YV        
Sbjct: 84  GAGGTVVVANGEEGEPASIKDRWLLRNRPHLVLDGLRLAAAVVGAERGYVYVSD--PEAA 141

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            S+++A+ E     L G        V + +      Y+ GEETA + +L G   +P  KP
Sbjct: 142 HSVESALGELDPDTLGG--------VTVTLSTVPAGYVAGEETAAVRALNGGPAKPTDKP 193

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P P   G+   PT V+NVE++A VP +   GAS +   G   + GT L +ISG    P  
Sbjct: 194 PRPFEAGVGDRPTLVSNVETLANVPFLQSHGASAFRAQGTPLSPGTFLATISGAGRPPVL 253

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E +    F EL+  H        D +   + GG     L    ++   +D++ ++  GS
Sbjct: 254 YELAHGTPFTELLALHG----VSADAVRGALMGGYFAGLLNRSVLQTT-LDHETMRRFGS 308

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           GLG  A+ V+      +     +  ++  E+ GQC  C  GT  M      L  G A   
Sbjct: 309 GLGCGAISVLTD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAAGGALRDGAATTE 367

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           ++D L   S  + GR  CA  DAA      L+  F   +   +D
Sbjct: 368 DVDRLRRWSVLLRGRGACATLDAATNMAASLLDQFPDDVTAHLD 411


>gi|11545457|gb|AAG37857.1|AF298190_7 NAD-dependent formate dehydrogenase beta subunit [Sinorhizobium
           meliloti]
          Length = 280

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 95/271 (35%), Positives = 147/271 (54%), Gaps = 3/271 (1%)

Query: 143 CYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
             A+G+LG++     +  D+ V  GAGAY+CGEET+LL SLEGK+G  R KPP PA+ GL
Sbjct: 2   ARAAGVLGASVLGSAHAFDMEVRTGAGAYVCGEETSLLNSLEGKRGLVRAKPPLPAHKGL 61

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
           +  PT +NNV S+A VP IL +GA +Y  FG   +RGT    I+G+V +    E +  +T
Sbjct: 62  FDRPTVINNVISLASVPVILDKGAGYYRDFGMGRSRGTIPLQIAGNVKHGGLFETAFGLT 121

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
             E++++  GG       + AV  GG      P   +     DY+        +G A ++
Sbjct: 122 LGEIVDEIGGGTASARP-VKAVQVGGPLGAYFPRA-LFDTPFDYEAFAARDGLIGHAGIV 179

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
           V D + D++K       F   ESCG+CTPCR G+   + V +R+  GI  ++  +LL ++
Sbjct: 180 VFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVEVADRIAAGIEPEKNRELLADL 239

Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
              ++  ++CALG    +P+   + +F    
Sbjct: 240 CNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 270


>gi|126436279|ref|YP_001071970.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium sp. JLS]
 gi|126236079|gb|ABN99479.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Mycobacterium sp. JLS]
          Length = 433

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/399 (27%), Positives = 182/399 (45%), Gaps = 22/399 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +  +D    G +  +        + +++EV+ SGL GRGGA F   +K   +      R 
Sbjct: 29  EDYADYAQSGGYREL-----PDPERLLDEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRG 83

Query: 78  HYL-VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             + + N +E EP + KDR ++RH PH +++G  +A+  + A  A +YV         S+
Sbjct: 84  GAVAIANGEEGEPASIKDRWLLRHRPHLVLDGLRLAARVVEAERAIVYVSD--PESARSV 141

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           + A+ +  ++ L G        V I V      Y+ GEETA + +++G   +P  KPP P
Sbjct: 142 ETALTQVDSTVLDG--------VSISVVVVDPGYVAGEETAAVRAIDGGPAKPTDKPPRP 193

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              G+ G PT V+NVE++A +P +   GA  Y   G  ++ GT L +++G    P   E 
Sbjct: 194 FEEGVGGLPTLVSNVETLANLPYLHEHGAREYRSAGTPSSPGTFLATVTGGGGPPALYEL 253

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              +   +++  H        D++  V+ GG     L    +  A +D++ L+ +GSGLG
Sbjct: 254 PHGVALADVLTWHG----ISPDSVSGVLMGGYFTGLLNRDVL-DATLDHEALRRLGSGLG 308

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
             AV V+      +     +  ++  E+ GQC  C  GT  M  V   L  G+A   ++ 
Sbjct: 309 CGAVGVLTDE-CPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAVAVALRDGVASDDDLA 367

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            L   S  + GR  C   DAA      L+  F   +   
Sbjct: 368 RLERWSVVLRGRGACGTLDAATNVAASLLTAFPQAVARH 406


>gi|108800655|ref|YP_640852.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium sp. MCS]
 gi|119869794|ref|YP_939746.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium sp. KMS]
 gi|108771074|gb|ABG09796.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Mycobacterium sp. MCS]
 gi|119695883|gb|ABL92956.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Mycobacterium sp. KMS]
          Length = 433

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 110/399 (27%), Positives = 180/399 (45%), Gaps = 22/399 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +  +D    G +  +        + ++ EV+ SGL GRGGA F   +K   +      R 
Sbjct: 29  EDYADYAQSGGYREL-----PDPERLLEEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRG 83

Query: 78  HYL-VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             + + N +E EP + KDR ++RH PH +++G  +A+  + A  A +YV         S+
Sbjct: 84  GAVAIANGEEGEPASIKDRWLLRHRPHLVLDGLRLAARVVEAERAIVYVSD--PESARSV 141

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           + A+ +  +  L G        V I V      Y+ GEETA + +++G   +P  KPP P
Sbjct: 142 ETALTQVDSPVLDG--------VSISVVVVDPGYVAGEETAAVRAIDGGPAKPTDKPPRP 193

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
              G+ G PT V+NVE++A +P +   GA  Y   G  ++ GT L +++G    P   E 
Sbjct: 194 FEEGVGGLPTLVSNVETLANLPYLHEHGAREYRSAGTPSSPGTFLATVTGGGGPPALYEL 253

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
              +   +++  H        D++  V+ GG     L    +  A +D++ L+ +GSGLG
Sbjct: 254 PHGVALADVLTWHG----ISPDSVSGVLMGGYFTGLLNRDVL-DATLDHEALRRLGSGLG 308

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
             AV V+      +     +  ++  E+ GQC  C  GT  M  V   L  G+A   ++ 
Sbjct: 309 CGAVGVLTDE-CPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAVAVALRDGVASDDDLA 367

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            L   S  + GR  C   DAA      L+  F   +   
Sbjct: 368 RLERWSVVLRGRGACGTLDAATNVAASLLTAFPQAVARH 406


>gi|313680913|ref|YP_004058652.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977]
 gi|313153628|gb|ADR37479.1| NADH dehydrogenase (quinone) [Oceanithermus profundus DSM 14977]
          Length = 538

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 185/371 (49%), Gaps = 25/371 (6%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           G D +I  V+ +GLRG GGA F T  K   +    +D   Y+VVN DESEPG  KDR +M
Sbjct: 189 GADALIGAVREAGLRGLGGALFPTARKLEAVRAEAAD-AKYVVVNGDESEPGNFKDRWLM 247

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
            H P  +  G  +A+ A+GA     YVRGE+      ++AA  E  ASG           
Sbjct: 248 EHNPRLVWAGAALAARAVGAGEIVFYVRGEYAAAHARVEAARAELEASGYFE-------G 300

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           +      G G YICGEE+ALLES+EG++ +PRLKPP+PA  GL+G PT VNNVE++A + 
Sbjct: 301 LKTQTFRGGGLYICGEESALLESIEGRRAEPRLKPPYPAQAGLFGRPTLVNNVETLAHLA 360

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            I   GA  Y        R  KLFSISG V  P   E  +                G  +
Sbjct: 361 WIAAHGAEAY------RARRPKLFSISGDVARPGVYELPLGTPLA----GALEAAGGAPE 410

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           +L AV+ GG++   L         +D++  +  G  +G  A++      D+      ++ 
Sbjct: 411 DLQAVLMGGAAGTFLRLPDAAELPLDFEAPRLSGDAVGPGALVAFGGGRDLWAVAEGIAA 470

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           F+ HESCG+C  C  GT  +   + R  +G         L E+   +E  ++C LG AA 
Sbjct: 471 FFAHESCGKCFSCSLGTPHLHAAVARRERG-------PQLEELFLALEQGSLCGLGQAAP 523

Query: 399 WPIQGLIKNFR 409
           W ++ LI+ F 
Sbjct: 524 WAVRSLIRRFE 534


>gi|296169557|ref|ZP_06851177.1| possible NADH dehydrogenase (quinone) [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895823|gb|EFG75518.1| possible NADH dehydrogenase (quinone) [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 435

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/413 (26%), Positives = 186/413 (45%), Gaps = 22/413 (5%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64
           + R+     G   + ++     G +  +        D ++ EV+A GL GRGGA F   +
Sbjct: 18  EPRLLFEQTGQAREDIAAYRRLGGYRPLADA-----DALLGEVEAGGLVGRGGAAFPLAV 72

Query: 65  KWSFMPKVCSDRPHYLVV-NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           K   +          +VV N +E EP + KDR ++R+ PH +++G  +A+  +GA  A++
Sbjct: 73  KLRAVRDNGRGAGGAVVVANGEEGEPASLKDRWLLRNRPHLILDGLRLAAAMVGADRAYV 132

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           YV         S++ A+ E    G+LG        V + +      Y+ GEETA + ++ 
Sbjct: 133 YVSD--PESAHSVETALGELEP-GILGR-------VTVAMSAVQPGYVAGEETAAVRAIN 182

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G   +P  KPP P   G+   PT V+NVE++A +P +  RG++ +   G   + GT L +
Sbjct: 183 GGPAKPTDKPPRPFEEGVDELPTLVSNVETLANLPFLQDRGSAAFRAQGTSLSPGTFLAT 242

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           I+G    P   E    + F EL+  H        + +   + GG     L    +  A +
Sbjct: 243 ITGAGRPPVLYELPHGLPFTELLALHG----VSPEAVRGALLGGYFAGLL-DRTVLEATL 297

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           D++ ++ +GSGLG  A+ V+      +     +  ++  E+ GQC  C  GT  M     
Sbjct: 298 DHETMRRLGSGLGCGAISVITD-DCPVAVAASVLAYFDRENAGQCGSCFNGTAAMAAAAG 356

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            L  G A   +++ L   S  + GR  CA  DAA      L+  F   +   +
Sbjct: 357 ALRDGAATAEDVERLRRWSVLLRGRGACATLDAATNVAASLLGRFAGEVTAHL 409


>gi|120405123|ref|YP_954952.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957941|gb|ABM14946.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Mycobacterium vanbaalenii PYR-1]
          Length = 430

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 117/407 (28%), Positives = 182/407 (44%), Gaps = 22/407 (5%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
             G   +S +     G +  +  +     D + +E+  +G+ GRGGA F   +K S + +
Sbjct: 23  RDGTDTESAAQYRDAGGYLPLSDV-----DALHDEIARAGVLGRGGAAFPLAVKLSTVRR 77

Query: 72  V-CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
              S R   LV N +E EP + KDR ++RH PH +++G  +A+  IGA    +YV  +  
Sbjct: 78  AHQSGRDTVLVANGEEGEPASVKDRWLLRHRPHLVLDGLRLAARIIGARHTHVYVSDDRA 137

Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
                     DE     L G        V + VH  A  Y+ GEETA + ++ G   +P 
Sbjct: 138 AAAVLAAL--DEITPDALDG--------VTVSVHTVAPGYVAGEETAAVRAINGGPAKPT 187

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
            KPP P   G+ G PT V+NVE++A +P + R  A+ Y   G + + GT L +++G    
Sbjct: 188 DKPPRPFEEGVGGLPTVVSNVETLANLPYVHRHDAAAYRELGTDGSPGTFLATLTGGGRP 247

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P   E        ELI  H        + +   + GG     +    + G  +D++ L+ 
Sbjct: 248 PGLYEIPFGTAAAELIALHG----VPAERVRGALMGGYFAGLVDRRILGGV-LDHESLRG 302

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           +GSGLG  AV V+      +     +  +Y  E+ GQC  C  GT  M      L  GIA
Sbjct: 303 LGSGLGCGAVSVITDE-CPVAVGASVLAYYDRENAGQCGSCFNGTAAMSAAATALRDGIA 361

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
              ++  L   S+ + GR  CA  DAA      ++  F   +   +D
Sbjct: 362 DGEDLARLRRWSEVLRGRGACATLDAACNIAASMLAMFPEEVARHLD 408


>gi|218678493|ref|ZP_03526390.1| NADH dehydrogenase (quinone) [Rhizobium etli CIAT 894]
          Length = 272

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/260 (35%), Positives = 139/260 (53%), Gaps = 2/260 (0%)

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
              G   DI V  GAGAY+CGEETALL SLEGK+G  R KPP PA+ GL+  PT +NNV 
Sbjct: 5   LGSGRAFDIEVRTGAGAYVCGEETALLNSLEGKRGVVRAKPPLPAHKGLFDRPTVINNVI 64

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           S+A VP I+ +GA++Y  FG   +RGT    I+G+V Y    E +  ++  ++I++  GG
Sbjct: 65  SLASVPVIMEKGAAFYRDFGMGRSRGTIPLQIAGNVRYGGLYETAFGLSLGDIIDRIGGG 124

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
              G   + AV  GG      P   +     DY+        +G A ++V D + D++K 
Sbjct: 125 TATGRP-VKAVQVGGPLGAYFPRA-LFDTPFDYEAFAAKDGLIGHAGLVVFDDTADMLKQ 182

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
                 F   ESCG+CTPCR G+   +   +++  GI  ++   LL ++   ++  ++CA
Sbjct: 183 ARFAMEFCAVESCGKCTPCRIGSTRGVETADKIAHGIEPEKNRALLADLCNTMKFGSLCA 242

Query: 393 LGDAAAWPIQGLIKNFRPLI 412
           LG    +P+   + +F    
Sbjct: 243 LGGFTPYPVMSAMTHFPEDF 262


>gi|218508846|ref|ZP_03506724.1| NADH dehydrogenase I subunit F [Rhizobium etli Brasil 5]
          Length = 196

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 166/195 (85%), Positives = 181/195 (92%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           MSRGHWD   +ILEKGRDWIINE+KASGLRGRGGAGF TG+KWSFMPK    RPHYLVVN
Sbjct: 1   MSRGHWDGTKQILEKGRDWIINEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVVN 60

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           ADESEPGTCKDRDIMRH+PHTLIEGCV+ASFA+GA+ A+IYVRGE+IRERE+LQAA+DEC
Sbjct: 61  ADESEPGTCKDRDIMRHDPHTLIEGCVVASFAMGANAAYIYVRGEYIREREALQAAIDEC 120

Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
           Y  GLLG N+KLG+D+DI VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN+GLYG
Sbjct: 121 YDYGLLGKNNKLGWDMDIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYG 180

Query: 204 CPTTVNNVESIAVVP 218
           CPTTVNNVESIAV P
Sbjct: 181 CPTTVNNVESIAVAP 195


>gi|47194143|emb|CAG14423.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 281

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 159/238 (66%), Positives = 188/238 (78%), Gaps = 1/238 (0%)

Query: 118 AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEET 176
           A  A    RGE   E    Q A++E YA+GL+G N+   GYD D+ V  GAGAYICGEET
Sbjct: 43  ARAADSDSRGEGYNESAKRQVAINEAYAAGLIGKNACGSGYDFDVFVMRGAGAYICGEET 102

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
           AL+ESLEGK+G+PRLKPPFPA+VG++GCPTTV NVE+++V PTI RRG SW+ GFGRE N
Sbjct: 103 ALIESLEGKQGKPRLKPPFPADVGVFGCPTTVANVETVSVAPTICRRGGSWFVGFGRERN 162

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTKLF+ISGHVN+PCTVEE MS+   +LIE+H GG+RGGWDNLLAVIPGGSS P +P  
Sbjct: 163 SGTKLFNISGHVNHPCTVEEEMSVPLKDLIERHAGGVRGGWDNLLAVIPGGSSTPLIPKS 222

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREG 354
                +MD+DGL +  +GLGTAAVIVMD+STDII+AI RL  FYKHESCGQCTPCREG
Sbjct: 223 VCEEVLMDFDGLIQAQTGLGTAAVIVMDKSTDIIRAIARLIEFYKHESCGQCTPCREG 280


>gi|167830014|ref|ZP_02461485.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 9]
          Length = 273

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/260 (34%), Positives = 140/260 (53%), Gaps = 2/260 (0%)

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
               +  ++ V  GAGAY+CGEETALLESLEGK+G  R KPP PA  GL+  PT +NNV 
Sbjct: 3   LGTAHAFELHVAKGAGAYVCGEETALLESLEGKRGVVRAKPPLPALSGLFAKPTVINNVI 62

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           ++A VP I  RGA++Y  +G   +RGT  F ++G+V     VE +  +T  EL+    GG
Sbjct: 63  TLATVPIIFARGAAFYRDYGMGRSRGTLPFQLAGNVKRGGLVELAFGVTLRELLFDFGGG 122

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
              G     A   GG     LP GQ     +DY+    +G+ +G   +++ D ++++ + 
Sbjct: 123 TASGRPA-RAAQVGGPLGTYLPEGQ-WDIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAEL 180

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
                 F   ESCG+CTPCR G+   +  + R+  G   +R++ LL ++   +   ++CA
Sbjct: 181 AEYAMHFCALESCGKCTPCRIGSTRGVETIARIRAGDTSERQVRLLRDLCDTMTAGSLCA 240

Query: 393 LGDAAAWPIQGLIKNFRPLI 412
           +G    +P+   + +F    
Sbjct: 241 MGGMTPYPVLSALDHFPEDF 260


>gi|118469883|ref|YP_889068.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171170|gb|ABK72066.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Mycobacterium smegmatis str. MC2 155]
          Length = 431

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 108/417 (25%), Positives = 187/417 (44%), Gaps = 25/417 (5%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           I   L   + ++ +  ++ G +  +D         +++ V+ASGL GRGGA F   +K  
Sbjct: 15  ITPRLLRDEPETATTYLAAGGYRALD-----DPQGLLDAVEASGLLGRGGAAFPLAVKLR 69

Query: 68  FMPKVCSDRPHYLVV-NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
            +          +V+ N +E EP + KDR ++R+ PH +++G  +A+  +GAH A +Y  
Sbjct: 70  TVRDNGRAAGGAVVIANGEEGEPASIKDRWLLRNRPHAVLDGLRLAALMVGAHRAVLYTS 129

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
               +   S++ A         L         V + +      Y+ GEE+A +  ++G  
Sbjct: 130 D--AQSARSVEHA---------LAETGGSSGGVAVELITVTTGYVAGEESAAVRVVDGGP 178

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
            +P  KPP P   G+ G PT ++NVE++A +  +   GA+ +  +G E + GT L +I+G
Sbjct: 179 AKPTDKPPRPFEEGVGGYPTLISNVETLAHLAYLNLHGAADFREYGTEGSPGTFLATITG 238

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
               P   E    + F +++  H        D +   + GG     L    + GA +D++
Sbjct: 239 AGRAPALYELPHGVAFTDVLALHG----VSPDTVTGALMGGYFAGLLGRE-IVGATLDHE 293

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            ++ +GSGLG  A+ V+      +     +  ++  E+ GQC  C  GT  M  V   L 
Sbjct: 294 TIRGLGSGLGCGAISVLTD-DCPVAVAAAVLSYFDRENAGQCGSCFNGTAAMAAVATALR 352

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            G A   ++  L   S  + GR  CA  D A      L+  F  ++   +D    C 
Sbjct: 353 DGTATDDDVARLKRWSVVLRGRGACATLDGACNVAASLLSGFDDVVRRHLDNN--CP 407


>gi|218513053|ref|ZP_03509893.1| formate dehydrogenase protein, beta subunit [Rhizobium etli 8C-3]
          Length = 232

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 102/228 (44%), Positives = 132/228 (57%), Gaps = 3/228 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L +Q R+ F     +   SLSD  + G    + + +      I+ EV  SGLRGRGGAG
Sbjct: 6   FLKEQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAG 65

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     +   Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA 
Sbjct: 66  FPTGIKWKTVLDAPGE-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 124

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             FIY R E+     ++  AV     +G+LG +    G   DI V  GAGAY+CGEETAL
Sbjct: 125 KGFIYTRSEYPHAIAAMSEAVGIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 184

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
           L SLEGK+G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA+
Sbjct: 185 LNSLEGKRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAA 232


>gi|146331922|gb|ABQ22467.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 1
           precursor-like protein [Callithrix jacchus]
          Length = 218

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 140/209 (66%), Positives = 167/209 (79%)

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           ++AV PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH GG
Sbjct: 1   TVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGG 60

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           + GGWDNLLAVIPGGSS P +P       +MD+D L +  +GLGTAAVIVMDRSTDI+KA
Sbjct: 61  VTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKA 120

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
           I RL  FYKHESCGQCTPCREG  WM +VM R V+G AQ  EID L+E+SK IEG TICA
Sbjct: 121 IARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEISKQIEGHTICA 180

Query: 393 LGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           LGD AAWP+QGLI++FRP +EER+ ++ +
Sbjct: 181 LGDGAAWPVQGLIRHFRPELEERMQRFAQ 209


>gi|256962025|ref|ZP_05566196.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           Merz96]
 gi|256952521|gb|EEU69153.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           Merz96]
          Length = 296

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/277 (35%), Positives = 151/277 (54%), Gaps = 3/277 (1%)

Query: 136 LQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            Q A+D    +G LG N     G++ DI +  GAGAYICGE +ALL S+EGK G+PR+KP
Sbjct: 1   FQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYICGENSALLNSIEGKTGRPRVKP 60

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P  A+VGLY  PT VNNVES A VP ILR G   +   G  +  GTKL  +SGH+     
Sbjct: 61  PHLADVGLYLQPTLVNNVESFASVPVILREGGQAFLEMGTADGGGTKLICLSGHIKNRGL 120

Query: 254 VEESMSITFDELIE-KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            E ++    +E+I  +  GG       L  +  GG S P      +R  +  Y+ L    
Sbjct: 121 YEVNLGTPLEEIIYGEQYGGGSATGRALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHD 180

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
             + + A++VMD S +++  +  ++ F+ HESCG+CTPCR GT  ++ ++ +  +  A  
Sbjct: 181 LSVSSGAIVVMDDSVNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATA 240

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
            ++  L ++  ++   + C LG + A P++  +  F 
Sbjct: 241 SDLPRLEKMLTHVTRLSACGLGQSVANPMKSALALFP 277


>gi|213612345|ref|ZP_03370171.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 232

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 106/211 (50%), Positives = 141/211 (66%), Gaps = 2/211 (0%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+++VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 HLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
           PFPA  G++G PT VNNVE++  VP IL  G
Sbjct: 202 PFPATSGVWGKPTCVNNVETLCNVPAILANG 232


>gi|146331726|gb|ABQ22369.1| mitochondrial NADH dehydrogenase (ubiquinone) flavoprotein 1
           precursor-like protein [Callithrix jacchus]
          Length = 215

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 138/204 (67%), Positives = 163/204 (79%)

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           PTI RRG +W++GFGRE N GTKLF+ISGHVN+PCTVEE MS+   ELIEKH GG+ GGW
Sbjct: 3   PTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGW 62

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
           DNLLAVIPGGSS P +P       +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL 
Sbjct: 63  DNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLI 122

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAA 397
            FYKHESCGQCTPCREG  WM +VM R V+G AQ  EID L+E+SK IEG TICALGD A
Sbjct: 123 EFYKHESCGQCTPCREGVDWMNKVMARFVRGDAQPAEIDSLWEISKQIEGHTICALGDGA 182

Query: 398 AWPIQGLIKNFRPLIEERIDQYHR 421
           AWP+QGLI++FRP +EER+ ++ +
Sbjct: 183 AWPVQGLIRHFRPELEERMQRFAQ 206


>gi|224826606|ref|ZP_03699707.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002]
 gi|224601207|gb|EEG07389.1| NADH dehydrogenase (quinone) [Lutiella nitroferrum 2002]
          Length = 332

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 92/266 (34%), Positives = 145/266 (54%), Gaps = 7/266 (2%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
             L+D ++RG      + +    + +   V+ SGLRGRGGAGF  G KW  +    +D  
Sbjct: 41  HRLADYVTRGGGTARQRAMAMAPEELRRAVEMSGLRGRGGAGFPAGRKWQAVAAQPAD-R 99

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YLVVNADE +PG   DR ++  +P  ++E  +IA+  +GA   +IY+R E+      L 
Sbjct: 100 KYLVVNADEGDPGAFSDRFLLEDDPFRVLEAMIIAAHGVGAGQGYIYLRKEYPLAGARLA 159

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+++   +G LG         D+ +  GAG+Y+CGEETALL +LEG++ + RL+PP  +
Sbjct: 160 EAIEQARRAGWLGER------FDVELVIGAGSYLCGEETALLNALEGRRPEVRLRPPQIS 213

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
             GL+G PT ++NVE++  +P ++  GA  Y+  G   +RGTKL S++   + P   E  
Sbjct: 214 ECGLFGAPTLLHNVETLCALPWVVEHGAVAYAALGFSLSRGTKLLSLNSLFSRPGLYEVE 273

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAV 283
             +   E+++K  GG           
Sbjct: 274 FGLPLSEVVDKLGGGCAAVVSRGSWW 299


>gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 1198

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 106/373 (28%), Positives = 171/373 (45%), Gaps = 29/373 (7%)

Query: 30   DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
            +   K +  G + +I E+  S L GRGGAGF TG KW    K  +    Y+V NADE  P
Sbjct: 830  EATKKAVSMGPEKVIEEIFKSNLVGRGGAGFRTGKKWESAYKTPA-TDKYVVCNADEGLP 888

Query: 90   GTCKDRDIMRHE--PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
             T KD  ++ HE     +  G  I +  IGA   F+Y+R E+     +L+ A+ +   + 
Sbjct: 889  STYKDWCLLNHEVKRKEVFTGMGICAKTIGAKRCFLYLRYEYRNLVPALEQAIKDVQRTC 948

Query: 148  LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGC 204
               ++ K        +  G G Y+ GEE A  ES+EG+   PR   P   FP   GL+  
Sbjct: 949  PELADLKY------EIRLGGGPYVAGEENAQFESIEGRAPLPRKDRPGNVFPTMEGLFHK 1002

Query: 205  PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS-ITFD 263
            PT +NNVE+   VP I+++G+  +        +  KL S++G V  P  +E  ++  + +
Sbjct: 1003 PTVINNVETFFAVPHIIQQGSQDF-----GEGKMPKLLSVTGDVEQPILIETHLNNYSLN 1057

Query: 264  ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
             L+++          +++A   GG + P +   +    +  +      G+     +V++ 
Sbjct: 1058 HLLKEIDA------KDIVAAEIGGCTEPIIFGSK-FDTLFGF----GKGTLNAVGSVVLF 1106

Query: 324  DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
            + S D+ K       F   ESC QC PCR+G+    R  + L         +  L   S+
Sbjct: 1107 NSSCDLGKIYENKLKFMSEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRALSVASE 1166

Query: 384  NIEGRTICALGDA 396
            +    +ICA G A
Sbjct: 1167 SAARSSICAHGKA 1179


>gi|51947507|gb|AAU14238.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 637

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 109/379 (28%), Positives = 172/379 (45%), Gaps = 32/379 (8%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D + K ++ G   +I EV  + L GRGGAGF TG KW    K    +  Y+V NADE  P
Sbjct: 270 DAIKKAVQMGPMKVIKEVTEAKLLGRGGAGFMTGRKWESAYKAD-VKEKYVVCNADEGLP 328

Query: 90  GTCKDRDIM--RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
            T KD  ++   ++   ++ G  I +  IGA   ++Y+R E+     +++A + +     
Sbjct: 329 STFKDWYLLNNENKRKEVLAGMGICANTIGAKKCYLYLRYEYRNLVPNIEADIKK----- 383

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGC 204
            L S       ++  V  G G Y+ GEE A  ES++G    PR   P   FP   GL+  
Sbjct: 384 -LQSECPELAMLNYEVRLGGGPYVAGEENAQFESIQGSAPIPRKDRPSSVFPTIEGLFFK 442

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFD 263
           PT +NNVE+ A VP I+++G++ +   G       KL S+SG V  P  +E  +   T +
Sbjct: 443 PTVINNVETFACVPHIVQQGSAAFKTNGLP-----KLLSVSGDVERPLIIECLLNGYTLN 497

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEMGSGLGTAAVIV 322
           +LI+           ++ A   GG + P +   +         + L   GS      V++
Sbjct: 498 DLIKDA------KARDVAAAEIGGCTEPLVFHDKFSMPFGFGKNVLNAAGS------VVL 545

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
            D + D  +       F   ESC QC PCR+G   + +  +++      K     L   +
Sbjct: 546 FDTACDFGEVYSNKLHFMADESCKQCVPCRDGAQLLHKAFDQMRTTGKTKYNERSLKTAA 605

Query: 383 KNIEGRTICALGDAAAWPI 401
           +  +   ICA G  A  P+
Sbjct: 606 EAAKLSAICAHGK-ALNPL 623


>gi|329934611|ref|ZP_08284652.1| putative Fe-S, FMN containing oxidoreductase [Streptomyces
           griseoaurantiacus M045]
 gi|329305433|gb|EGG49289.1| putative Fe-S, FMN containing oxidoreductase [Streptomyces
           griseoaurantiacus M045]
          Length = 543

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 162/381 (42%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +   L+GRGGAGF    K   + +          +VVN  E EP   KD 
Sbjct: 44  MGGEQLAQLAEQISLKGRGGAGFPFHKKLRSVAEQAIRRGTRPVVVVNGSEDEPACRKDT 103

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    + V  E      S++ A+ E       G + + 
Sbjct: 104 VLINRAPHLILDGALLVAEALGARTLVVGVTRESTE--RSMEQALAER------GLSDRR 155

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G  +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 156 GAPIRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKISASQSGVGGLPTLLSNAETFA 215

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++        
Sbjct: 216 QLAIAARIGPDRYRNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 271

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L  +G  LG  A++ + + T  +    +
Sbjct: 272 -PPVPQGVLTGGYHGKWIDAATVDEAIVSRNSLDAVGGSLGAGAILPIRQETCPLGESLQ 330

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R ME ++ G      ++ L +V+K ++ R  C+  D
Sbjct: 331 VAKWLAEESAGQCGPCYLGLPAAARGMEDILNGGG-PAALEALKQVAKAVKRRGACSHPD 389

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  IK F   +   +
Sbjct: 390 GSAMFLESTIKAFTDDLAAHV 410


>gi|758215|emb|CAA88752.1| unknown [Brevundimonas diminuta]
          Length = 401

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 115/388 (29%), Positives = 179/388 (46%), Gaps = 12/388 (3%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
                      +  + ++  + L G+GGA F +  K     +  +    YLVVN  E EP
Sbjct: 26  AAYRYATTIDAEAFLAQIDQAQLSGKGGANFPSARKMRLFHQQAAP-RKYLVVNGGEHEP 84

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
           G+ KD  ++ H P T+IEG +  + A+GA    + V         +++ A      +G L
Sbjct: 85  GSAKDDWLLLHHPDTVIEGALCVAHALGATHILVAVNEGRAATVAAVREAAAAIAIAGRL 144

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                      I V      Y+ GEETALL+++ G+  +P  +PP+P   G  G PT V+
Sbjct: 145 FPG--------IEVVLVPDEYVVGEETALLQAVAGQVAKPVRRPPYPIESGHQGMPTLVH 196

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NVE++A VP +L  GA  Y G G    +G  L +      +       + I  + L+  +
Sbjct: 197 NVETLAHVPYLLLLGAEAYRGLGAPG-QGVTLCTFGEEFVHAGVRLVPVGIDLNSLLYGY 255

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
            GG++ G   + AV PGG +   LPA +      D   L+  GS LG AA+     S D+
Sbjct: 256 GGGLKSG-QAIRAVQPGGPASGFLPADR-FDVAFDSASLRAAGSSLGCAAITAYAASDDL 313

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           + A  + + F+   SC QC  CR  T  ++ ++ +L  G A  R +  +  + K   G+ 
Sbjct: 314 VAAARQRAAFFASASCEQCPQCRMQTQMLLAIVRQLESGKANARTLQQIPVIVKANAGKA 373

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERID 417
           IC L D    PIQ LI  F+  I+ R+ 
Sbjct: 374 ICGLIDMPVAPIQSLIHYFKGDIDARMR 401


>gi|51947509|gb|AAU14239.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 641

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 108/374 (28%), Positives = 170/374 (45%), Gaps = 31/374 (8%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +   K +  G + +I E+  S L GRGGAGF TG KW    K  +    Y+V NADE  P
Sbjct: 273 EATKKAVSMGPEKVIEEIFKSNLVGRGGAGFRTGKKWESAYKTPA-TDKYVVCNADEGLP 331

Query: 90  GTCKDRDIMRHE--PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV-DECYAS 146
            T KD  ++ HE     +  G  I +  IGA   F+Y+R E+     +L+ A+ D     
Sbjct: 332 STYKDWCLLNHEVKRKEVFTGMGICAKTIGAKRCFLYLRYEYRNLVPALEQAIMDVQRTC 391

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYG 203
             L        D+   +  G G Y+ GEE A  ES+EG+   PR   P   FP   GL+ 
Sbjct: 392 PELA-------DLKYEIRLGGGPYVAGEENAQFESIEGRAPLPRKDRPGNVFPTMEGLFH 444

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS-ITF 262
            PT +NNVE+   VP I+++G+  +        +  KL S++G V+ P   E  ++  + 
Sbjct: 445 KPTVINNVETFFAVPHIIQQGSQSF-----GEGKMPKLLSVTGDVDAPILFETHLNNYSL 499

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
           + L+++          +++A   GG + P +   +    +  +      G+     +V++
Sbjct: 500 NHLLKEIDA------KDIVAAEIGGCTEPIIFGSK-FDTLFGF----GKGTLNAVGSVVL 548

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
            + S D+ K       F   ESC QC PCR+G+    R  + L         +  L   S
Sbjct: 549 FNSSCDLGKIYENKLKFMSEESCKQCVPCRDGSYIFHRAFKELRDTGKTSYNMRALSVAS 608

Query: 383 KNIEGRTICALGDA 396
           ++    +ICA G A
Sbjct: 609 ESAARSSICAHGKA 622


>gi|183984697|ref|YP_001852988.1| NADH dehydrogenase I (chain F) (NADH-ubiquinone oxidoreductase
           chain F), NuoF_1 [Mycobacterium marinum M]
 gi|183178023|gb|ACC43133.1| NADH dehydrogenase I (chain F) (NADH-ubiquinone oxidoreductase
           chain F), NuoF_1 [Mycobacterium marinum M]
          Length = 445

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 106/378 (28%), Positives = 174/378 (46%), Gaps = 25/378 (6%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP----KVC 73
           + ++   ++G +  +        D ++ E+ ASGL GRGGA F   +K   +     +  
Sbjct: 34  EDVAAYRAQGGYRPLGDA-----DKLLREIDASGLLGRGGAAFPLAVKMRAVRDNCRRAG 88

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                 ++ N +E EP + KDR ++R+ PH +++G  +A+  + A  A++YV        
Sbjct: 89  PAGGAVVIANGEEGEPASFKDRWLLRNRPHLVLDGLRLAAALVAATRAYVYVSD--PESA 146

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            S++ A+ +       G        V + V      Y+ GEETA + ++ G   +P  KP
Sbjct: 147 RSVERALTQLDPDAFGG--------VAVSVWAVPPGYVAGEETAAVRAINGGPVKPSDKP 198

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
           P P   G+ G PT V+NVE++A +P + R GAS Y   G  ++ GT L +I+G    P  
Sbjct: 199 PRPFEYGVSGRPTLVSNVETLANLPYLHRHGASEYRALGTPSSPGTFLATITGAGRAPVL 258

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
            E    + F EL+  H          +  V+ GG     L  G + G  +D++ ++ +GS
Sbjct: 259 YELPYGLPFSELLALHA----VAPTKIRGVLMGGYFAGLLNRGVL-GTTLDHETMRRLGS 313

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           GLG  A+ V+      +     +  ++  E+ GQC  C  GT  M  V   L    A   
Sbjct: 314 GLGCGAISVITD-DCPVAVAASVLSYFDRENAGQCGSCFNGTAAMAAVGGALRDFAATSE 372

Query: 374 EIDLLYEVSKNIEGRTIC 391
           +ID L   S  + GR  C
Sbjct: 373 DIDRLRRWSVVLRGRGAC 390


>gi|302560697|ref|ZP_07313039.1| oxidoreductase [Streptomyces griseoflavus Tu4000]
 gi|302478315|gb|EFL41408.1| oxidoreductase [Streptomyces griseoflavus Tu4000]
          Length = 523

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +   LRGRGGAGF    K   + +          +VVN  E EP   KD 
Sbjct: 32  LGGEQLAQLAERINLRGRGGAGFPFHKKLRSVAESAIKRGVRPVVVVNGSEDEPACRKDT 91

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    + V  E  +   S++AA+ E       G N+  
Sbjct: 92  VLINRAPHLILDGALLCAEAMGARTLVVGVTRESTQ--RSMEAALAER------GLNNGR 143

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 144 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASKNGVGGAPTLLSNAETFA 203

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++        
Sbjct: 204 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 259

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L  +G  LG  A++ + + T  +    R
Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVNEAIISRNSLDAVGGSLGAGAILPISQDTCPLGESLR 318

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R +E ++ G      ++ + +V++N++ R  C+  D
Sbjct: 319 VAQWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALEAVKQVARNVKRRGACSHPD 377

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  +K F   +   +
Sbjct: 378 GSAMFLESTVKAFTDDLAAHV 398


>gi|323718239|gb|EGB27419.1| hypothetical protein TMMG_02286 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 228

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 92/218 (42%), Positives = 130/218 (59%), Gaps = 4/218 (1%)

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           +NNVE+IA VP+I+  G  W+   G E + G  L+S+SGHV  P   E  + IT  EL+ 
Sbjct: 2   INNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELL- 60

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
            + GG+R G   L    PGGSS P L    +    +DY+G+   GS LGT A+ + D +T
Sbjct: 61  DYAGGVRAG-HRLKFWTPGGSSTPLLTDEHL-DVPLDYEGVGAAGSMLGTKALEIFDETT 118

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
            +++A+ R + FYKHESCG+CTPCREGT W+ ++ ERL  G     +ID L ++S +I G
Sbjct: 119 CVVRAVRRWTEFYKHESCGKCTPCREGTFWLDKIYERLETGRGSHEDIDKLLDISDSILG 178

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           ++ CALGD AA P+   IK+FR      + +   C F 
Sbjct: 179 KSFCALGDGAASPVMSSIKHFRDEYLAHV-EGGGCPFD 215


>gi|294629306|ref|ZP_06707866.1| oxidoreductase [Streptomyces sp. e14]
 gi|292832639|gb|EFF90988.1| oxidoreductase [Streptomyces sp. e14]
          Length = 536

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 165/381 (43%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +A  LRGRGGAGF    K   +            +VVN  E EP   KD 
Sbjct: 44  LGGEQLAQLAEAINLRGRGGAGFPFHKKLRSVADSAIKRGVRPVVVVNGSEDEPACRKDT 103

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    + V  E  +   S++AA+ E       G ++  
Sbjct: 104 VLINRAPHLILDGALLCAEALGARTLVVGVTRESTQ--RSMEAALAER------GLSNGR 155

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 156 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASQTGVGGAPTLLSNAETFA 215

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++        
Sbjct: 216 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 271

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L  +G  LG  A++ + ++T  +    +
Sbjct: 272 -PPVPQGVLTGGYHGKWIDAATVDEAIVSRNSLDAVGGSLGAGAILPISQNTCPLGESLQ 330

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R ME ++ G      ++ L +V++N++ R  C+  D
Sbjct: 331 VAKWLAEESAGQCGPCYLGLPAAARGMEDILNGGG-PAALEALKQVARNVKRRGACSHPD 389

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  +K F   +   +
Sbjct: 390 GSAMFLESTVKAFTDDLAAHV 410


>gi|51947503|gb|AAU14236.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 637

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 108/374 (28%), Positives = 170/374 (45%), Gaps = 31/374 (8%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D + K ++ G   +I EV  + L GRGGAGF TG KW    K    +  Y+V NADE  P
Sbjct: 270 DAIKKAVQMGSMKVIKEVTEAKLLGRGGAGFMTGRKWESAYKAD-VKEKYVVCNADEGLP 328

Query: 90  GTCKDRDIM--RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
            T KD  ++   ++   ++ G  I +  IGA   ++Y+R E+     +++A + +     
Sbjct: 329 STFKDWYLLNNENKRKEVLAGMGICANTIGAKKCYLYLRYEYRNLVPNIEADIKK----- 383

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGC 204
            L S       ++  V  G G Y+ GEE A  ES++G    PR   P   FP   GL+  
Sbjct: 384 -LQSECPELAMLNYEVRLGGGPYVAGEENAQFESIQGSAPIPRKDRPSSVFPTIEGLFFK 442

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESM-SITFD 263
           PT +NNVE+ A VP I+++G++ +   G       KL S+SG V  P  +E  +   T +
Sbjct: 443 PTVINNVETFACVPHIVQQGSAAFKTNGLP-----KLLSVSGDVERPLIIECLLNGYTLN 497

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEMGSGLGTAAVIV 322
           +LI+           ++ A   GG + P +   +         + L   GS      V++
Sbjct: 498 DLIKDA------KARDVAAAEIGGCTEPLVFRDKFSMPFGFGKNVLNAAGS------VVL 545

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
            D + D  +       F   ESC QC PCR+G   + +  +++      K     L   +
Sbjct: 546 FDTACDFGEVYSNKLHFMADESCKQCVPCRDGAQLLHKAFDQMRTTGKTKYNERSLKTAA 605

Query: 383 KNIEGRTICALGDA 396
           +  +   ICA G A
Sbjct: 606 EAAKLSAICAHGKA 619


>gi|51894238|ref|YP_076929.1| NADH dehydrogenase subunit [Symbiobacterium thermophilum IAM 14863]
 gi|51857927|dbj|BAD42085.1| NADH dehydrogenase subunit [Symbiobacterium thermophilum IAM 14863]
          Length = 394

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 127/395 (32%), Positives = 191/395 (48%), Gaps = 22/395 (5%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF--STGMKWSFMPKVCSD 75
           + L+   +RG +  ++    +G  W++ +V  +GLRGRGG+G     G KW  +      
Sbjct: 14  EDLAAYRARGGYAGLEAARTRGSGWVLEQVTRAGLRGRGGSGDGRPIGQKWQRVA-ASRV 72

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
              Y+V NA ES+  + KDR ++   PH ++EG +IA+ A+GA  A++YVRG+     + 
Sbjct: 73  PERYVVANAAESQAVSRKDRYLLARFPHRVLEGLLIAAQALGAREAYLYVRGDSPEALDG 132

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
            + AV E  A+GLLG        V + V   A   + GEETA+L++LEG +G P+ KPP 
Sbjct: 133 ARDAVAEAGAAGLLG-------GVSVTVQPSAPTAVSGEETAILDALEGLEGYPQPKPPR 185

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P  +GL G PT V N ES+A V  + R G       G     GT LF+++G V+ P   E
Sbjct: 186 PEEIGLRGRPTLVQNAESLAAVAALFRLGVDRVRAVGTPTCPGTALFTVTGAVDRPGVYE 245

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
                      +          + +LAV+PGG     L   ++    + Y+ L  +GS L
Sbjct: 246 VPHGTPLA---QLLALAGAPPREEILAVLPGGLGSGPLRPDEL-DVPLTYEDLAALGSSL 301

Query: 316 GTAAVIVMDRST-DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           G +AV+V  R+   +   +          SCGQC  CREG   ++R +E      A++R 
Sbjct: 302 GNSAVVVFRRADATLPDLVRENVALLARGSCGQCRGCREGHEGLLRALEAGDATEARRRA 361

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFR 409
             LLY       GR  CA     A      ++ F 
Sbjct: 362 EVLLY-------GRGNCAFPTGTARFALRALQEFP 389


>gi|256787805|ref|ZP_05526236.1| oxidoreductase [Streptomyces lividans TK24]
          Length = 536

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 166/381 (43%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +   L+GRGGAGF    K   + +          +VVN  E EP   KD 
Sbjct: 44  LGGEQLAQLSERINLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDT 103

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    I V  E  +   S++AA+ E       G ++  
Sbjct: 104 VLINRAPHLILDGALLCAEAMGARTLVIGVTRESTQ--RSMEAALAER------GLSNGR 155

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 156 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASRSGVGGAPTLLSNAETFA 215

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++        
Sbjct: 216 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 271

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L+++G  LG  A++ + + T  +    R
Sbjct: 272 -PPVPQGVLTGGYHGKWIDAATVDEAIVSRNSLQQVGGSLGAGAILPIGQDTCPLGESLR 330

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R +E ++ G      ++ + +V+KN++ R  C+  D
Sbjct: 331 VAQWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALEAVKQVAKNVKRRGACSHPD 389

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  +K F   +   +
Sbjct: 390 GSAMFLESTVKAFTDDLAAHV 410


>gi|119595059|gb|EAW74653.1| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa, isoform
           CRA_b [Homo sapiens]
          Length = 230

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 136/210 (64%), Positives = 166/210 (79%), Gaps = 1/210 (0%)

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           M K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A+IY+RGE
Sbjct: 1   MNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGE 60

Query: 129 FIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           F  E  +LQ A+ E Y +GL+G N+   GYD D+ V  GAGAYICGEETAL+ES+EGK+G
Sbjct: 61  FYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQG 120

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
           +PRLKPPFPA+VG++GCPTTV NVE++AV PTI RRG +W++GFGRE N GTKLF+ISGH
Sbjct: 121 KPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH 180

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           VN+PCTVEE MS+   ELIEKH G  R G 
Sbjct: 181 VNHPCTVEEEMSVPLKELIEKHAGTDRPGH 210


>gi|229489886|ref|ZP_04383742.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Rhodococcus erythropolis SK121]
 gi|229323236|gb|EEN89001.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Rhodococcus erythropolis SK121]
          Length = 403

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 109/377 (28%), Positives = 171/377 (45%), Gaps = 18/377 (4%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           G D +I+ +  SGL GRGGAGFS G+K        + R   ++ N  E EP + KD  ++
Sbjct: 30  GDDSVISAISRSGLAGRGGAGFSAGVK----MAAITGRRPVVIANGSEGEPLSSKDAVLL 85

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
              PH +++G  IA+ A+ A  AF+ V        E L+ A+ E   SG   +       
Sbjct: 86  SDSPHLVLDGLSIAAAAVRATDAFLVVPASHT---ERLRNAITERRHSGWDRT------- 135

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+ V   AG ++ GE+TAL+ ++EGK   PR      +  G+ G PT V+NVE++A V 
Sbjct: 136 -DVRVVASAGRFVSGEKTALIAAVEGKPPIPRSSLASSSKSGVKGRPTLVHNVETLAHVA 194

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
           TI R G  W+   G  +  GT L ++SG VN P  VE  +    + ++       R   D
Sbjct: 195 TIARFGVDWFRSSGTTSEPGTMLVTLSGAVNNPGVVEVPIGSRLEWVVGDIG---RADMD 251

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           N  AV+ GG     +    + G  +  + L  +G+  G   V  +   T  ++A   +  
Sbjct: 252 NTRAVLVGGYHGTWINRADLAGRRLSRESLAAIGARPGAGVVHALAVDTCGLRATADIVD 311

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           +   ES GQC PC  G   +  V   L      ++ I  +   +  ++GR  C   D   
Sbjct: 312 YLARESAGQCGPCLNGLPRLASVFGDLAYHRPGEQTIHEIRRYAGLVDGRGACHHPDGTV 371

Query: 399 WPIQGLIKNFRPLIEER 415
             ++  +  F   +   
Sbjct: 372 RLVRSALTAFADDVRLH 388


>gi|21221032|ref|NP_626811.1| oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|289771690|ref|ZP_06531068.1| oxidoreductase [Streptomyces lividans TK24]
 gi|6714679|emb|CAB66251.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|289701889|gb|EFD69318.1| oxidoreductase [Streptomyces lividans TK24]
          Length = 524

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 166/381 (43%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +   L+GRGGAGF    K   + +          +VVN  E EP   KD 
Sbjct: 32  LGGEQLAQLSERINLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDT 91

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    I V  E  +   S++AA+ E       G ++  
Sbjct: 92  VLINRAPHLILDGALLCAEAMGARTLVIGVTRESTQ--RSMEAALAER------GLSNGR 143

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 144 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASRSGVGGAPTLLSNAETFA 203

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++        
Sbjct: 204 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 259

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L+++G  LG  A++ + + T  +    R
Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVDEAIVSRNSLQQVGGSLGAGAILPIGQDTCPLGESLR 318

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R +E ++ G      ++ + +V+KN++ R  C+  D
Sbjct: 319 VAQWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALEAVKQVAKNVKRRGACSHPD 377

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  +K F   +   +
Sbjct: 378 GSAMFLESTVKAFTDDLAAHV 398


>gi|239931336|ref|ZP_04688289.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
          Length = 536

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 163/381 (42%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +   LRGRGGAGF    K   + +          +VVN  E EP   KD 
Sbjct: 44  LGGEQLAQLAERINLRGRGGAGFPFHKKLRSVAETAIKRGVRPVVVVNGSEDEPACRKDT 103

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    + V  E  +   S++AA+ E       G ++  
Sbjct: 104 VLINRAPHLILDGALLCAEAMGARTLVVGVTRESTQ--RSMEAALAER------GLSNGR 155

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 156 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAVPPGRKTSASKNGVGGAPTLLSNAETFA 215

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT + ++SG V  P  VE    +    +++        
Sbjct: 216 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVVEVPTGVPLRYVLQLAGA---- 271

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L  +G  LG  A++ + + T  +     
Sbjct: 272 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGSLGAGAILPISQDTCPLGESLM 330

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R +E ++ G      ++ + +V+KN++ R  C+  D
Sbjct: 331 VAKWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALEAVKQVAKNVKRRGACSHPD 389

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  +K F   +   +
Sbjct: 390 GSAMFLESTVKAFTDDLAAHV 410


>gi|291439710|ref|ZP_06579100.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
 gi|291342605|gb|EFE69561.1| oxidoreductase [Streptomyces ghanaensis ATCC 14672]
          Length = 524

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 163/381 (42%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +   LRGRGGAGF    K   + +          +VVN  E EP   KD 
Sbjct: 32  LGGEQLAQLAERINLRGRGGAGFPFHKKLRSVAETAIKRGVRPVVVVNGSEDEPACRKDT 91

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    + V  E  +   S++AA+ E       G ++  
Sbjct: 92  VLINRAPHLILDGALLCAEAMGARTLVVGVTRESTQ--RSMEAALAER------GLSNGR 143

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 144 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAVPPGRKTSASKNGVGGAPTLLSNAETFA 203

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT + ++SG V  P  VE    +    +++        
Sbjct: 204 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVVEVPTGVPLRYVLQLAGA---- 259

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L  +G  LG  A++ + + T  +     
Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGSLGAGAILPISQDTCPLGESLM 318

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R +E ++ G      ++ + +V+KN++ R  C+  D
Sbjct: 319 VAKWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALEAVKQVAKNVKRRGACSHPD 377

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  +K F   +   +
Sbjct: 378 GSAMFLESTVKAFTDDLAAHV 398


>gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis]
          Length = 1206

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 105/373 (28%), Positives = 172/373 (46%), Gaps = 29/373 (7%)

Query: 30   DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
            +   K +  G + +I EV  S L GRGGAGF TG KW    K  +    Y+V NADE  P
Sbjct: 830  EATKKAVSMGPEKVIEEVFKSNLVGRGGAGFRTGKKWESAYKTPA-SDKYVVCNADEGLP 888

Query: 90   GTCKDRDIMRHE--PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
             T KD  ++ +E     +  G  I +  IGA   F+Y+R E+     +L+ ++ +     
Sbjct: 889  STYKDWCLLNNEAKRKEVFTGMGICAKTIGAKRCFMYLRYEYRNLVPALEQSIKDVQ--- 945

Query: 148  LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP---FPANVGLYGC 204
               S      D+   +  G G Y+ GEE A  ES+EG+   PR   P   FP   GL+  
Sbjct: 946  ---STCPELADLKYEIRLGGGPYVAGEENAQFESIEGRAPLPRKDRPGNIFPTMEGLFHK 1002

Query: 205  PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS-ITFD 263
            PT +NNVE+   +P I+++G+  +        +  KL S++G V+ P  +E +++  + +
Sbjct: 1003 PTVINNVETFFAIPHIIQQGSQSF-----GEGKMPKLLSVTGDVDEPILIETNLNNYSLN 1057

Query: 264  ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
             L+++          +++A   GG + P +   +    +  +      G+     +V++ 
Sbjct: 1058 HLLQEISA------KDIVAAEIGGCTEPIIFGSK-FDTLFGF----GRGTLNAVGSVVLF 1106

Query: 324  DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
            + S D+ K       F   ESC QC PCR+G+    R  + L         +  L   S+
Sbjct: 1107 NSSCDLGKIYENKLKFMAEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRALAVASE 1166

Query: 384  NIEGRTICALGDA 396
            +    +ICA G A
Sbjct: 1167 SAARSSICAHGKA 1179


>gi|330944403|gb|EGH46418.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 254

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/237 (35%), Positives = 123/237 (51%), Gaps = 5/237 (2%)

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN--RGTK 240
           E ++  PR KPPFPA VG++G PT VNNVE++  VP I+  G  WY    RE +   GTK
Sbjct: 1   EARRANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNGNDWYKSLAREGSEDHGTK 60

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L   SG V  P   E    +   EL E + GG+R G+  L    PGG+    L    +  
Sbjct: 61  LMGFSGKVKNPGLWELPFGVQARELFEDYAGGMRDGFK-LKCWQPGGAGTGFLLPEHL-D 118

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A M   G+ ++G+ +GT   + +D S +++  +  +  F+  ESCG CTPCR+G  W ++
Sbjct: 119 AQMYAGGIAKVGTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCRDGLPWSVK 178

Query: 361 VMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
           ++  +  G  Q  +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 179 MLRAIENGQGQPGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 235


>gi|291279649|ref|YP_003496484.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1]
 gi|290754351|dbj|BAI80728.1| NADH dehydrogenase I, F subunit [Deferribacter desulfuricans SSM1]
          Length = 495

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/384 (28%), Positives = 187/384 (48%), Gaps = 35/384 (9%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            + ++      + K+L   RD ++  VK S LRGRGGA F T  K+  + K  +    YL
Sbjct: 142 DEYITT-----LTKLLSADRDDLLERVKKSDLRGRGGANFPTYKKFEAI-KNINSSKKYL 195

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           V N DESEP   KDR ++   P   + G +++++ +GA     Y+RGE+I++++     +
Sbjct: 196 VCNIDESEPFVFKDRALLEINPFVAVAGAILSAYIVGATDIIFYIRGEYIKQKKI----L 251

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
            E  +  LL  +      +++ +  GAGAY+CGEET L+ES EGK+G PR KPP+P   G
Sbjct: 252 SEITSYFLLEIDFF--NSLNVEIVSGAGAYVCGEETGLIESFEGKRGNPRNKPPYPFESG 309

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           ++G PT VNN+E+++ V  +  +         +  N   +L S+ G V     VE  + +
Sbjct: 310 IFGKPTLVNNIETLSYVFEVCEK---------KIVNLNKRLISVCGDVKEKGVVEIDLDV 360

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
             +E+++  C    G        I GG+S   +        + D++      S +G+  +
Sbjct: 361 AINEIVKNICDRTIGNPG---FAILGGASGFFVDKNNFSKKLRDFE-----KSFVGS--I 410

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
            + D S D +  +     F+  ESCGQC PC +G   +  ++  +     +  +I     
Sbjct: 411 FIADESRDKLSILKYFVSFFADESCGQCIPCYKGYQKLEEIL-SINNLNDKVEDI---KS 466

Query: 381 VSKNIEGRTICALGDAAAWPIQGL 404
           + +++   T C LG A    +   
Sbjct: 467 IVESMSVSTRCGLGKAIKNGVYSF 490


>gi|302551362|ref|ZP_07303704.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736]
 gi|302468980|gb|EFL32073.1| oxidoreductase [Streptomyces viridochromogenes DSM 40736]
          Length = 524

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 164/381 (43%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +   L+GRGGAGF    K   + +          +VVN  E EP   KD 
Sbjct: 32  MGGEQLAQLAERINLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDT 91

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    + V  E  +   S++AA+ E       G ++  
Sbjct: 92  VLINRAPHLILDGALLCAEALGARTLVVGVTRESTQ--RSMEAALAER------GLSNGR 143

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 144 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAVPPGRKVSASQNGVGGAPTLLSNAETFA 203

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++        
Sbjct: 204 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 259

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L  +G  LG  A++ + + T  +    R
Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPITQDTCPLGESLR 318

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R ME ++ G      ++ L +V+KN++ R  C+  D
Sbjct: 319 VAQWLAEESAGQCGPCYLGLPAAARGMEDILNGGG-PAALEALKQVAKNVKRRGACSHPD 377

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  IK F   +   +
Sbjct: 378 GSAMFLESTIKAFTDDLAAHV 398


>gi|160334187|gb|ABX24511.1| respiratory-chain NADH dehydrogenase [Streptomyces cacaoi subsp.
           asoensis]
          Length = 497

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 102/392 (26%), Positives = 169/392 (43%), Gaps = 24/392 (6%)

Query: 14  GLQGKSLSDSMSRGHWDNV------DKILEKGRDW---IINEVKASGLRGRGGAGFSTGM 64
           G   + L+D  + G    +       + L +  D    +++ V+A+GL GRGGAGF T  
Sbjct: 75  GYTARLLADWRATGRPATLGDHLRHREALRRTTDARGSLVDAVEAAGLTGRGGAGFPTAR 134

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           K   +          +VVNA ESEP + KD+ ++   PH +++G V+A+  +GA    + 
Sbjct: 135 KMRSV--AAGRGRPVVVVNAMESEPASRKDQFLIAVAPHLVLDGAVLAAVQVGADTVHVC 192

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           +      ++  L  AV+E  ++ L          V I +H     Y+  E T+L+  L+G
Sbjct: 193 LPRTRTAQQRRLGNAVEERRSARLD--------PVRIRLHALPHGYVSSESTSLVRWLDG 244

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
              +PR  PP     G+   PT V+N E++A +  I R G  W+   G  +  GT + ++
Sbjct: 245 GPARPRGNPPHSHERGVARRPTLVHNAETLAHLALIARHGPDWFRRAGTPDEPGTMMITV 304

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG V  P   E  + I      +   G      + + A++ GG +   LPA  +    + 
Sbjct: 305 SGAVTAPGVGEVPLGIPL----DTALGRAGDTTEPVRALLVGGFAGTWLPAEDLH-TPLT 359

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
              L  +G+  G   +I + RS   +    R+  F   +S  QC PCR G   +      
Sbjct: 360 RRDLAPLGAAPGAGVLIALPRSACGLLETARILAFLGAQSARQCGPCRYGLPAVAEDFAA 419

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
           L  G +    +  L   +  +  R  C   D 
Sbjct: 420 LAAGQSHPELLSRLRRRTGLLPDRGACRHPDG 451


>gi|290960411|ref|YP_003491593.1| oxidoreductase [Streptomyces scabiei 87.22]
 gi|260649937|emb|CBG73053.1| putative oxidoreductase [Streptomyces scabiei 87.22]
          Length = 537

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 166/381 (43%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +   L+GRGGAGF    K   + +          +VVN  E EP   KD 
Sbjct: 44  MGGEALAQLSERINLKGRGGAGFPFHKKLRSVAESAIKRGIRPVVVVNGSEDEPACRKDT 103

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    I V  E      S++AA+ E       G +++ 
Sbjct: 104 VLINRAPHLILDGALLVAEALGARQLVIGVTRESTE--RSMEAALAER------GLSNRR 155

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G  +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 156 GAAIRASVQRNPVRMVTGAAGSLIRSIDGGPPIPPGRKTSASKSGVGGAPTLLSNAETFA 215

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G+  Y   G  +  GT + ++SG V  P  +E    +    +++        
Sbjct: 216 QLAIGARIGSERYGNTGLYDEPGTVMLTVSGAVARPMVIEAPTGVPLRYILQLAGA---- 271

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  A++  + L  +G  LG  A++ + + T  +    +
Sbjct: 272 -PPVPQGVLTGGYHGKWIDAATVNEAVVSRNSLDAVGGALGAGAILPISQDTCPLGESLQ 330

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R ME ++ G      ++ L +V+KN++ R  C+  D
Sbjct: 331 VAKWLAEESAGQCGPCYLGLPAAARGMEDILNGGG-PAALEALKQVAKNVKRRGACSHPD 389

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  IK F   +   +
Sbjct: 390 GSAMFLESTIKAFTDDLAAHV 410


>gi|164430982|gb|ABY55763.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Drosophila
           silvestris]
          Length = 193

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 127/188 (67%), Positives = 148/188 (78%)

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           N GTKLF+ISGHVN PCTVEE MSI   ELIE+HCGG+ GGWDNLL VIPGGSS P +P 
Sbjct: 1   NSGTKLFNISGHVNTPCTVEEEMSIPLKELIERHCGGVVGGWDNLLGVIPGGSSTPIIPK 60

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
                 IMD+DGL    + LGTAA+IVMD+STD+IKAI RL  FYKHESCGQCTPCREG 
Sbjct: 61  KVCDDVIMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPCREGI 120

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           GWM ++MER VKG AQ  EID+L+E+SK IEG TICALGD AAWP+QGLI++FRP IE+R
Sbjct: 121 GWMNKIMERFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPEIEKR 180

Query: 416 IDQYHRCN 423
           +  + +  
Sbjct: 181 MQLHAQQP 188


>gi|29832029|ref|NP_826663.1| oxidoreductase [Streptomyces avermitilis MA-4680]
 gi|29609147|dbj|BAC73198.1| putative oxidoreductase [Streptomyces avermitilis MA-4680]
          Length = 524

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 165/381 (43%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +   L+GRGGAGF    K   + +          +VVN  E EP   KD 
Sbjct: 32  MGGEQLAQLSERISLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDT 91

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    I V  E  +   S++AA+ E       G +++ 
Sbjct: 92  VLINRAPHLILDGALLVAEALGARTLVIGVTRESTQ--RSMEAALSER------GLSNRR 143

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G  +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 144 GAAIRARVQRNPIRMVTGAAASLIRSIDGGPAIPPGRKVSASQNGVGGAPTLLSNAETFA 203

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R GA  Y   G  +  GT + ++SG V  P  +E    +    +++        
Sbjct: 204 QLAIAARIGAERYCNTGLYDEPGTVMLTVSGAVARPMVLEVPTGVPLRYVLQLAGA---- 259

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L  +G  LG  A++ + + T  +    R
Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPISQETCPLGESLR 318

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R M  ++ G      ++ L +V+K ++ R  C+  D
Sbjct: 319 VAQWLADESAGQCGPCYLGLPAAARGMADILNGGG-PAALEALKQVAKAVKRRGACSHPD 377

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  +K F   +   +
Sbjct: 378 GSAMFLESTVKAFTDDLAAHV 398


>gi|218660421|ref|ZP_03516351.1| NADH dehydrogenase (quinone) [Rhizobium etli IE4771]
          Length = 303

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/299 (41%), Positives = 173/299 (57%), Gaps = 15/299 (5%)

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
           EGCVIASFA+GA+ A+IYVRGE+IRERE+LQAA+DECY  GLLG N+KLG+D+DI VHHG
Sbjct: 1   EGCVIASFAMGANAAYIYVRGEYIREREALQAAIDECYDYGLLGKNNKLGWDMDIFVHHG 60

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
           AGAY+CGEETALL SLEG +G  R KPP PA+ GL+ CPT +NNV S+A VP I+ +GA+
Sbjct: 61  AGAYVCGEETALLNSLEGTRGVVRAKPPLPAHKGLFDCPTVINNVISLASVPVIMEKGAA 120

Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
           +Y  FG   +RGT    I+G++ Y    E +  ++  +++++  GG   G   + AV  G
Sbjct: 121 FYRDFGMGRSRGTIPLQIAGNIRYGGLYETAFGLSLGDIVDRIGGGTATGRP-VKAVQVG 179

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G      P   +     DY+        +G A ++V D + D++K         +     
Sbjct: 180 GPLGAYFPRA-LFDTPFDYESFAARDGLIGHAGIVVFDDTADMLKQARFAMGILRRRE-- 236

Query: 347 QCTPCREGTGWMMRVMERLVKGIA-------QKREIDLLYEVSKNIEGRTICALGDAAA 398
                R+      R+  R   G         ++R   LL ++  N E  ++CALG   A
Sbjct: 237 ----LRQVHALSHRLDARRRDGRQDRPWASSRRRTGALLADLCNNDEIGSLCALGGFTA 291


>gi|21234156|ref|NP_639733.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|13620642|emb|CAC36681.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
          Length = 525

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 167/381 (43%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +A  L+GRGGAGF    K   + +          +VVN  ES+P   KD 
Sbjct: 32  LGGEQLAKLAEAINLKGRGGAGFPFHKKLRSVTEAAIKRGVRPVVVVNGSESDPSCRKDT 91

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++ + A+GA    + V  E  +   S++AA+ E       G ++  
Sbjct: 92  VLINRAPHLILDGALLVAEALGARTLVVGVTRESTQ--RSMEAALAER------GLSNSR 143

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 144 RSALRASVQRNPVRMVTGSAASLIRSIDGGPAIPPGRKVSASQSGVGGAPTLLSNAETFA 203

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++        
Sbjct: 204 QLAIAARIGRERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 259

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L  +G  LG  A++ + + T  +    +
Sbjct: 260 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPISQETCPLGEALQ 318

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R +E ++ G      ++ L +V++N++ R  C+  D
Sbjct: 319 VAKWLAEESAGQCGPCYLGLPAAARGLEDILNGGG-PAALETLKQVARNVKRRGACSHPD 377

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++ +IK F   +   +
Sbjct: 378 GSAMFLESMIKVFTDDLAAHV 398


>gi|301061235|ref|ZP_07202017.1| NADH-quinone oxidoreductase subunit F family protein [delta
           proteobacterium NaphS2]
 gi|300444554|gb|EFK08537.1| NADH-quinone oxidoreductase subunit F family protein [delta
           proteobacterium NaphS2]
          Length = 293

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/254 (35%), Positives = 134/254 (52%), Gaps = 5/254 (1%)

Query: 1   MLTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAG 59
           M   Q  I  +    +  S+      G ++ + ++L     + I   V  SGL+GRGGAG
Sbjct: 2   MPAAQPLILKDRLEHETISIDKYRRTGGYEGLRELLNHVAPENIKKTVLDSGLQGRGGAG 61

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F  G KW  +P      P Y+V N DE EPGT KDR ++   PHT+IEG +IA +A  A 
Sbjct: 62  FPAGKKWQLLPDDAP-HPRYIVANTDEMEPGTFKDRLLLSVHPHTVIEGMIIAGYANSAE 120

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETAL 178
             + ++R  + +     + A+ E  A+G LG       +  +I+VH  AG YICGE   L
Sbjct: 121 KGYFFIRPSYQQIALKFENALSEARAAGFLGQQILGSDFSFEIVVHRSAGRYICGEAKGL 180

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE-NNR 237
           + +L+G++  P ++       GL+G PT VNN E++A VP I+R GA W+   G+     
Sbjct: 181 IHALQGERPHPNIEGHLT-EEGLWGRPTIVNNAETLAYVPHIVRNGAEWFRDLGKHDKAP 239

Query: 238 GTKLFSISGHVNYP 251
           G K++S+ G V  P
Sbjct: 240 GNKIYSVCGRVRRP 253


>gi|322369579|ref|ZP_08044143.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haladaptatus paucihalophilus DX253]
 gi|320550749|gb|EFW92399.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haladaptatus paucihalophilus DX253]
          Length = 517

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 171/420 (40%), Gaps = 34/420 (8%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGL--RGRGGAGFSTGMK 65
           +      +   +          + V        + +I+ V+  GL  RGRG A     + 
Sbjct: 120 VLERCGWVDPTTAEGYE-----EFVAAEAGAAPETVISRVETVGLLGRGRGDARMDEPVA 174

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
             +     +D    +VVNA E++     DR ++  +P  +++G    + AIGA    +Y 
Sbjct: 175 EEWRTARETDGDPVVVVNAGETDDRNATDRTLLEADPVAVLDGATAVASAIGAEDIVVYC 234

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
               +  RE ++ A+          +++     V I        YI  E T  LE+LEG 
Sbjct: 235 PESALGTRERVRKAMTA-------FNDTDAAEGVTIRTFAAPDMYIAAEPTMALEALEGN 287

Query: 186 -KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
            + + RL+PP P   GLYG PT V+   + A V  ILR      +    + + GT+L ++
Sbjct: 288 DRLEARLRPPSPGEHGLYGRPTIVHTPRTFAQVRRILRDPD---AFDPDDADPGTRLLTV 344

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +G V  P T+E     + + ++E                  GG           R     
Sbjct: 345 TGDVTAPATLELPTGGSLETVLEAV-----SVDSEFKMACVGGQFGGV-----TRSLDHT 394

Query: 305 YDGLKEMGSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
                  G+ LGT  V+ + D+S   +      + F + E+CG+C PCREG+  +  ++ 
Sbjct: 395 PSAPALTGARLGTDGVVELFDQSRCAVVTAGTRARFAEEENCGRCVPCREGSKQLTNLLR 454

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            +  G  +    D+L E+++ +   +IC  G +A+ P+   +  F P      +   RC 
Sbjct: 455 DIYSGEFKD---DMLRELARTMRETSICYFGRSASRPVTTAMDEFEPEFHAHAE--GRCP 509


>gi|329909992|ref|ZP_08275177.1| NADH-ubiquinone oxidoreductase chain F [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546329|gb|EGF31348.1| NADH-ubiquinone oxidoreductase chain F [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 206

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 95/201 (47%), Positives = 126/201 (62%), Gaps = 2/201 (0%)

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           +   G   Y+G G+ NN GTK+FS+SG V  P   E  +   F  L+E   G        
Sbjct: 1   MFAMGGEAYAGLGKPNNGGTKIFSMSGDVAKPGNYEVPLGTPFATLLELAGGM--RDGKK 58

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           + AVIPGGSS+P L    M    MDYD + + GS LG+ AVIVMD +  ++K++ RLS F
Sbjct: 59  IKAVIPGGSSMPVLTGDVMMATDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYF 118

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
           Y  ESCGQCTPCREGTGW+ R++ R+  G  +  ++DLL  ++ NI+GRTICALGDAAA 
Sbjct: 119 YYEESCGQCTPCREGTGWLYRMVHRIEHGQGRADDLDLLNSIADNIQGRTICALGDAAAM 178

Query: 400 PIQGLIKNFRPLIEERIDQYH 420
           P++ +IKNFR   E  I+  H
Sbjct: 179 PVRAMIKNFREEFEYHIEHKH 199


>gi|19527557|gb|AAL89893.1| RE33648p [Drosophila melanogaster]
          Length = 239

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 110/180 (61%), Positives = 134/180 (74%), Gaps = 1/180 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 50  LADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGLRGRGGAGFP 109

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC+IA  A+GA  A
Sbjct: 110 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 169

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLE 180
           +IY+RGEF  E  ++Q A+ E Y +GL+G N+   GYD D+ +H GAGAYICGEETAL+ 
Sbjct: 170 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKNACGTGYDFDVFMHRGAGAYICGEETALIN 229


>gi|239941073|ref|ZP_04693010.1| oxidoreductase [Streptomyces roseosporus NRRL 15998]
 gi|239987553|ref|ZP_04708217.1| oxidoreductase [Streptomyces roseosporus NRRL 11379]
 gi|291444513|ref|ZP_06583903.1| oxidoreductase [Streptomyces roseosporus NRRL 15998]
 gi|291347460|gb|EFE74364.1| oxidoreductase [Streptomyces roseosporus NRRL 15998]
          Length = 525

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 153/381 (40%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
              + +    +   LRGRGGAGF  G K   + K          +V+N  E EP   KD 
Sbjct: 44  MTGERLAELAETISLRGRGGAGFPFGKKLRAVAKASIRRGVRPVVVINGSEGEPACRKDT 103

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++A+ A+GA    + V              +    A    G + + 
Sbjct: 104 VLLNRAPHLILDGALLAAEALGARTLVVAVTRNSTE--------ISVRAALAERGLSDRR 155

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G  +   V       + GE ++++ +  G    P  +    A  G+ G PT ++N E+ A
Sbjct: 156 GQQLRARVVRTPERMVSGEASSVIRAANGGPALPPGRRERAAETGVGGAPTLLSNAETYA 215

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  N  GT L ++SG V  P  VE    +    ++E        
Sbjct: 216 QLAVAARIGPRRYGHTGLPNEPGTVLLTVSGAVARPMVVEVPTGVPLRYVLEMAGA---- 271

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A     A++  + L  +G  LG  A++ +   T  +    R
Sbjct: 272 -PPLPQGVLTGGYHGNWIDAVSSHNAVVSRESLATVGGALGAGAILPIGPDTCPLGESLR 330

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   E+ GQC PC+ G       +  ++ G      ++ L EV++ ++GR  C   D
Sbjct: 331 IANWLAAETAGQCGPCKLGLPAAAGGLSDVLNGGG-PAALEALREVTQAVKGRGACKHPD 389

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  +   +  F   +   +
Sbjct: 390 GSARFLLSTLSAFTDDLAAHV 410


>gi|284164323|ref|YP_003402602.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
 gi|284013978|gb|ADB59929.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
          Length = 565

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 96/433 (22%), Positives = 171/433 (39%), Gaps = 44/433 (10%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF----S 61
            R+      +   S+ D       ++  ++     D  ++ V+  GL GRG   +     
Sbjct: 142 RRVLGRCGWVDPASVPD-------ESAAELAGDDPDEALSRVRDVGLLGRGRGDWSVDDP 194

Query: 62  TGMKWSFMPKVCSD---------RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
              +W    +  ++             +VVN +ES+     DR ++   P  +++G +  
Sbjct: 195 VAEEWELAREAAAEGADEGDSEADEPVVVVNGNESDDRNATDRTLLEAAPGEVLDGALAV 254

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172
           +  +GA    +Y      R RE +  A            + + G      V  G   YI 
Sbjct: 255 AELVGADDVVVYCNENDDRARERVHEAARNAEERFAERLDRESGP----EVVVGPDRYIA 310

Query: 173 GEETALLESLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
           GE T  LE++EG  + + RL+PP PA  GLYG PT V+   ++A V   L     + +  
Sbjct: 311 GEPTMALEAMEGNDRLEARLRPPSPAEHGLYGRPTIVHTPRTMAQVRRALLAPDEFDAD- 369

Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
             + + GT+LF+++G V+   TVE     +  ++ E      R           GG    
Sbjct: 370 --DADPGTRLFTVTGDVDAAATVELPTGGSLADVRETVDLEGR-----FKMACVGGQFGG 422

Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
                  R            G+ LGT  V+ +++    ++    R + F   E+CG+C  
Sbjct: 423 F-----TRSLSQSPSAPALEGAELGTEGVVELLNEDNCVLATAGRRANFAMEENCGRCVT 477

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
           CREG+  +  ++  +  G  Q  +I    E+++ +   +IC  G  A  P    ++ F  
Sbjct: 478 CREGSQELTNMLRDIYDGQYQDAKI---RELTRVMGETSICQFGRTAIRPAVTGMREFER 534

Query: 411 LIEERIDQYHRCN 423
            +    +   RC 
Sbjct: 535 EVAAHTE--GRCP 545


>gi|108744325|gb|ABG02411.1| HtxX [Xanthobacter flavus]
          Length = 496

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 107/387 (27%), Positives = 172/387 (44%), Gaps = 31/387 (8%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDW--IINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            ++ +D  + G +  + +++        ++ ++ A    GR G GF  G KW  +    +
Sbjct: 119 ARTFADYRAAGGYGQLRRVMADPGAAARMLAQLSAHQAVGRAGVGFPVGEKWRQVM--AA 176

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
                ++VN DE E    KDR I+  +PH ++E  ++A+   GA   F+YVR ++     
Sbjct: 177 GGTPVVIVNGDEGELAIFKDRFILETDPHGVLEAALVAARVTGADLVFLYVRDDYAPIHA 236

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            ++ A++E  A+GL          + + +    GA+ICGEETAL+ SLEG+  +P  +PP
Sbjct: 237 IVRRALEEVAAAGLAE-------GIGLELRRSGGAFICGEETALIASLEGRAARPTERPP 289

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN----RGTKLFSISGHVNY 250
           FP   G  G PT ++NVE+        R  A+W    G   +       +LFS+SG V  
Sbjct: 290 FPTTRGYLGRPTLLHNVETF------YRLTAAWGGTPGSPASVLLDPQVRLFSVSGRVCA 343

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P            +L+E   G        L  ++ GGSS   + A   R  +     L  
Sbjct: 344 PGPKPVRGLSRLADLVEIAGGM--QNGHALGGLVIGGSSGTLVGAADCRRPL---ADLLA 398

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
            G  LGT   IV     +      R++ +   ESCGQC PCR GT    R++        
Sbjct: 399 EGLRLGTGGAIVFGADDEPRAIAARMAAYLARESCGQCGPCRIGTAHAARILAAPGPLDL 458

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAA 397
                    +++  +   ++CALG  A
Sbjct: 459 PLL-----DDLATVMGEGSLCALGRNA 480


>gi|307328405|ref|ZP_07607581.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Streptomyces violaceusniger Tu 4113]
 gi|306885978|gb|EFN16988.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Streptomyces violaceusniger Tu 4113]
          Length = 504

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKD 94
               D ++   +   LRGRGGAGF    K   + +    R     +VVN  E EPG  KD
Sbjct: 40  ALRADELVALAENIDLRGRGGAGFPFATKVQAVVESAGRREGRCAVVVNGSEGEPGCLKD 99

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
             ++ H PH +I+G V+A+ A+GA    I V    +   ES+ AA+ E   SG       
Sbjct: 100 TALLLHTPHLVIDGAVLAAEALGAEEVAIAVHRADVE--ESVAAAIAERGPSG------- 150

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
               V + V+     ++ GE  A++  + G    P  +    ++ GL G PT ++N E+ 
Sbjct: 151 ----VPVSVNRTPDRFVAGEGGAVINGISGAPAIPNGRKIRTSDSGLSGLPTLLSNTETF 206

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           A +    R GA  Y   G     GT L ++ G       +E    +    ++E       
Sbjct: 207 AQLAVAARMGALPYRSVGLPTEPGTTLLTVGGKY----VMETPTGVPLTYVLELCGLTPG 262

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                  AV+ GG     L    +  A +  + +K+ G+ LG  AV+ +  +T  +    
Sbjct: 263 ------QAVLVGGYHGKWLDPRSINAATISRESMKKYGARLGAGAVLPIPENTCPLGETA 316

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394
           R++ +   E+ GQC PC  G   +   + ++ +G  Q   ID +     ++ GR  C+  
Sbjct: 317 RVARWLAAETAGQCGPCFIGLPALADAIGQVERGGGQSS-IDNVRAYVNSVRGRGACSHP 375

Query: 395 DAAAWPIQGLIKNFRPLIEER 415
           D  A  +   +  F    E  
Sbjct: 376 DGTAGFVTTALDAFPEEFEAH 396


>gi|189308114|gb|ACD86941.1| mitochondrial NADH dehydrogenase [Caenorhabditis brenneri]
          Length = 190

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 112/177 (63%), Positives = 140/177 (79%)

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           SG VN PCTVEE MS+   +LIE+HCGG+ GGWDNLLA+IPGGSSVP +P       +MD
Sbjct: 1   SGQVNNPCTVEEEMSVPLKDLIERHCGGVIGGWDNLLAIIPGGSSVPLMPKNVCDTVLMD 60

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           +D L    SGLGTAAVIVM++ TDI+K I RLS+FYKHESCGQCTPCREG  W+ ++M R
Sbjct: 61  FDALVAAQSGLGTAAVIVMNKQTDIVKCIARLSLFYKHESCGQCTPCREGCNWLNKMMWR 120

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
            V G A+  EID+++E+SK IEG TICALGDAAAWP+QGLI++FRP +E R+ ++H+
Sbjct: 121 FVDGKAKPSEIDMMWELSKQIEGHTICALGDAAAWPVQGLIRHFRPELERRMAEFHK 177


>gi|86741278|ref|YP_481678.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Frankia sp. CcI3]
 gi|86568140|gb|ABD11949.1| NADH dehydrogenase subunit F [Frankia sp. CcI3]
          Length = 510

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 103/429 (24%), Positives = 161/429 (37%), Gaps = 63/429 (14%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSF------------------------------ 68
           G   ++ E+  SGL GRGGA F T  K +                               
Sbjct: 93  GPGRLLPEIHDSGLTGRGGAAFPTWRKLAASAEGTCLDGSHSGSAHRGSTHRGSQHRNAG 152

Query: 69  --MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
               +  S     +V NA E EP + KD  ++   PH +++G  +A+ A+GA  AF+Y++
Sbjct: 153 HRADRYRSSAHPVVVANAAEGEPESAKDVTLLTVAPHLVLDGLQLAAEAVGADDAFVYLK 212

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYD-VDIIVHHGAGAYICGEETALLESLEGK 185
                                 L      G+D   + +      ++ GE +A++ +LEG 
Sbjct: 213 PG-----------PAVTAVRRALAQRRAAGWDRFTVQIREAPETFVAGEASAVIAALEGG 261

Query: 186 KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
             +PR      A  G +G PT V N E++A +  I R GASW+   G     GT L +++
Sbjct: 262 AARPRAHWQPLAEAGFHGRPTLVQNAETLAHLALIARWGASWFRSVGTAEEPGTFLATVT 321

Query: 246 GHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
           G V  P  VE         L +   G      + + A   GG S   LP G      M  
Sbjct: 322 GAVAAPGVVEVPFGTPLGTLAQLAGG----FTEQVGAFRVGGYSGAWLPGGPGATIAMSR 377

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
             L   G+  GT  V V+      +    R+  +   ++ GQC PC  G   +   +  +
Sbjct: 378 AALAPWGAAPGTGVVAVLPARGCGLVETARIVGYLAAQNAGQCGPCVSGLPQLADAVAGM 437

Query: 366 VK------------GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
            +            G   +  I  L  ++  + GR  C   D AA  +   ++ F   I 
Sbjct: 438 ARTDGGSGGPVQGAGDPGQSAIRALR-LAALVAGRGACHHPDGAARLVHSALRTFVDDIR 496

Query: 414 ERIDQYHRC 422
              +   RC
Sbjct: 497 AHAE--GRC 503


>gi|297199617|ref|ZP_06917014.1| oxidoreductase [Streptomyces sviceus ATCC 29083]
 gi|197713457|gb|EDY57491.1| oxidoreductase [Streptomyces sviceus ATCC 29083]
          Length = 505

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 94/381 (24%), Positives = 166/381 (43%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
            G + +    +A  L+GRGGAGF    K   + +          +VVN  E EP   KD 
Sbjct: 12  MGGEQLAKLSEAINLKGRGGAGFPFHKKLRSVAEAAIKRGVRPVVVVNGSEDEPACRKDT 71

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++A+ A+GA    I V  E  +   S++AA+ E       G ++  
Sbjct: 72  VLINRAPHLILDGALLAAEALGARTLVIGVTRESTQ--RSMEAALAER------GLSNGR 123

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              +   V       + G   +L+ S++G    P  +    +  G+ G PT ++N E+ A
Sbjct: 124 RSALRARVQRNPVRMVTGAAASLIRSIDGGPAIPPGRKVSASQNGVGGAPTLLSNAETFA 183

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT + ++SG V  P  +E    +    +++        
Sbjct: 184 QLAIAARIGPERYGNTGLYDEPGTVMLTVSGAVARPMVIEVPTGVPLRYVLQLAGA---- 239

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + A  +  AI+  + L  +G  LG  A++ + + T  +    R
Sbjct: 240 -PPVPQGVLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPITQETCPLGESLR 298

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   ES GQC PC  G     R ME ++ G      ++ L +V+KN++ R  C+  D
Sbjct: 299 VAQWLAEESAGQCGPCYLGLPAAARGMEDILNGGG-PAALEALKQVAKNVKRRGACSHPD 357

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  ++  IK F   +   +
Sbjct: 358 GSAMFLESTIKAFTDDLAAHV 378


>gi|289807699|ref|ZP_06538328.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 211

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/207 (40%), Positives = 115/207 (55%), Gaps = 2/207 (0%)

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
           AG YICGEETAL+ SLEG++  PR KPPFPA  G++G PT VNNVE++  VP IL  G  
Sbjct: 7   AGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVE 66

Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
           WY    +  + GTKL   SG V  P   E        E++E + GG+R G     A  PG
Sbjct: 67  WYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGLK-FKAWQPG 125

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G+    L    +    M+++ + + GS LGTA  + +D    ++  +  L  F+  ESCG
Sbjct: 126 GAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCG 184

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKR 373
            CTPCR+G  W ++++  L +G  Q  
Sbjct: 185 WCTPCRDGLPWSVKILRALERGEGQPG 211


>gi|190345481|gb|EDK37373.2| hypothetical protein PGUG_01472 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 243

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 122/177 (68%), Positives = 148/177 (83%)

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
            SGHVN PCTVEE MSI   EL+EKHCGG++GGWDNLL VIPGGSSVP +P       +M
Sbjct: 35  FSGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGSSVPVMPKHVCDNVLM 94

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD LK++GSGLGTAAVIVM++ TD+I+AI R + FYKHESCGQCTPCREGT W+ R+M+
Sbjct: 95  DYDALKDVGSGLGTAAVIVMNKQTDMIRAIQRFAHFYKHESCGQCTPCREGTTWLQRMMD 154

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R VKG A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRPL+ ER+ QYH
Sbjct: 155 RFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPLMVERMQQYH 211


>gi|254383432|ref|ZP_04998783.1| oxidoreductase [Streptomyces sp. Mg1]
 gi|194342328|gb|EDX23294.1| oxidoreductase [Streptomyces sp. Mg1]
          Length = 481

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 157/377 (41%), Gaps = 27/377 (7%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIM 98
           D +I+  +A  LRGRGGAGF    K   + +     +    +VVNA E EP   KD  ++
Sbjct: 45  DDLIDLAEAIDLRGRGGAGFPFHRKLRAVMRSARAKEGRSAVVVNASEGEPSCLKDTALL 104

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
            H PH +++G  +A+ A+GA    + V  + +    S++ A+ E             G  
Sbjct: 105 LHVPHVVLDGAQLAADALGAEDVVVGVTRDDVE--RSVRDAIAER------------GPG 150

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             + V      ++ GE T+++  +EG    P  +    +  GL G PT ++N E+ A + 
Sbjct: 151 TRLRVSRLPERFVTGEGTSMINGIEGNPAVPNGQKVRTSERGLTGLPTLLSNTETYAQLA 210

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
              R GA+ Y+  G     GT + ++SG       VE     +   ++E           
Sbjct: 211 IAARLGAAGYNSVGLPAEPGTLMLTVSGATA----VEIPSGTSLAYVLELCGSSPG---- 262

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               V+ GG     L       A++    L    + LG  AV+ +   T     + R++ 
Sbjct: 263 --QGVLVGGYHGRWLTPEDASQALLSRQSLAAFDAVLGAGAVLPLPEDTCPAGEVARVTR 320

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           +   E+ GQC PC  G   +   +E++V G  +    + +    + + GR  C+  D  +
Sbjct: 321 WMADETAGQCGPCVRGLPSLATAVEQMVAGGGRAT-FEAVEARMRAVRGRGACSHPDGTS 379

Query: 399 WPIQGLIKNFRPLIEER 415
             +   +  F   + + 
Sbjct: 380 GFVASALNVFADELRDH 396


>gi|146419679|ref|XP_001485800.1| hypothetical protein PGUG_01472 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 243

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 121/177 (68%), Positives = 147/177 (83%)

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
             GHVN PCTVEE MSI   EL+EKHCGG++GGWDNLL VIPGGSSVP +P       +M
Sbjct: 35  FLGHVNEPCTVEEEMSIPLKELLEKHCGGVKGGWDNLLGVIPGGSSVPVMPKHVCDNVLM 94

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD LK++GSGLGTAAVIVM++ TD+I+AI R + FYKHESCGQCTPCREGT W+ R+M+
Sbjct: 95  DYDALKDVGSGLGTAAVIVMNKQTDMIRAIQRFAHFYKHESCGQCTPCREGTTWLQRMMD 154

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           R VKG A ++EID+++E++K IEG TICALGDAAAWP+QGLIK+FRPL+ ER+ QYH
Sbjct: 155 RFVKGQATEKEIDMIFELTKEIEGHTICALGDAAAWPVQGLIKSFRPLMVERMQQYH 211


>gi|164430970|gb|ABY55757.1| NADH dehydrogenase (ubiquinone) flavoprotein 1 [Drosophila
           silvestris]
          Length = 222

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/174 (60%), Positives = 128/174 (73%), Gaps = 1/174 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  +  RG W    +I+ KG +WIINEVK SGLRGRGGAGF 
Sbjct: 49  LADEDRIFTNLYGRHDWRLKGAQKRGDWYKTKEIVLKGPEWIINEVKTSGLRGRGGAGFP 108

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           +GMKWSFM K    RP YLVVNADE EPGTCKDRDIMRH+PH L+EGC+IA  A+GA  A
Sbjct: 109 SGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDRDIMRHDPHKLVEGCLIAGRAMGAQAA 168

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGE 174
           +IY+RGEF  E  ++Q A+ E Y +GL+G ++   GY+ D+ +H GAGAYICGE
Sbjct: 169 YIYIRGEFYNEASNMQLAIAEAYQAGLIGKDACGTGYNFDVFMHRGAGAYICGE 222


>gi|329912138|ref|ZP_08275695.1| NAD-reducing hydrogenase hoxS subunit alpha [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545684|gb|EGF30831.1| NAD-reducing hydrogenase hoxS subunit alpha [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 274

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 92/254 (36%), Positives = 139/254 (54%), Gaps = 12/254 (4%)

Query: 166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGA 225
           GAGAYICG+ETAL+ESLEGK+G PR+KPP+P N+G  G PT+ NNVE+ A V  I+  GA
Sbjct: 2   GAGAYICGDETALIESLEGKRGTPRVKPPYPVNMGYLGKPTSANNVETFAAVAAIIEHGA 61

Query: 226 SWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285
           SW+   G   + GT+L SISG  + P   E +  IT  +++ K   G R  W    AV  
Sbjct: 62  SWFKAMGTAESTGTRLLSISGDCSAPGIYEIAWGITLADVLAKA--GARDPW----AVQV 115

Query: 286 GGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESC 345
            G S  C+   +     +  + L   GS +      + DRS D++  + +   F+ +ESC
Sbjct: 116 SGPSGDCVSVEKDGQRAIALEDLSCNGSFM------IFDRSRDLLDIVSQFMQFFVNESC 169

Query: 346 GQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           G C PCR G   + + + R++ G A ++++D +    K +   + C LG  +  PI   +
Sbjct: 170 GICVPCRSGNVDLFKKINRVIDGKACQKDLDEVVVWGKLVRKTSRCGLGGTSPKPILTTL 229

Query: 406 KNFRPLIEERIDQY 419
           +NF  L   ++ + 
Sbjct: 230 QNFPELYAAKLVKQ 243


>gi|302540307|ref|ZP_07292649.1| putative oxidoreductase [Streptomyces hygroscopicus ATCC 53653]
 gi|302457925|gb|EFL21018.1| putative oxidoreductase [Streptomyces himastatinicus ATCC 53653]
          Length = 497

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 94/381 (24%), Positives = 151/381 (39%), Gaps = 26/381 (6%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS--DRPHYLVVNADESEPGTCKD 94
               D ++   +   LRGRGGAGF    K + + +          +VVN  E EP   KD
Sbjct: 33  ALRADELVALAENIDLRGRGGAGFPFAKKVTAVVEAAGRAGGRCNVVVNGSEGEPSCLKD 92

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
             ++ H PH +I+G  +A+ AIGA    I          ESL AA+ E   SG       
Sbjct: 93  TALLLHTPHLVIDGATLAAEAIGAEEVVIACHR--PDVEESLNAAIAERGPSG------- 143

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
               V + V      ++ GE  A++  + G    P  +    +  GL G PT ++N E+ 
Sbjct: 144 ----VPVEVSVTPDRFVAGEGGAVINGISGAPAIPNGRKIRSSENGLGGLPTLLSNTETY 199

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           A +    R GA  Y   G     GT L ++ G       +E    +    ++E       
Sbjct: 200 AQLAVAARMGALPYRSVGLPTEPGTTLLTVGGKY----VMETPTGVPLTYVLELCGLTPG 255

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                   V+ GG     L    +  A +  + +K+ G+ LG  AV+ +   T  +    
Sbjct: 256 ------QGVLVGGYHGKWLDPKSIGAATISRESMKKYGARLGAGAVLPIPEDTCPLGETA 309

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394
           R++ +   E+ GQC PC  G   +   + ++ +G  Q   ID +     ++  R  C+  
Sbjct: 310 RVARWLAAETAGQCGPCFIGLPALADAIGQVERGGGQSS-IDNVRAYINSVRKRGACSHP 368

Query: 395 DAAAWPIQGLIKNFRPLIEER 415
           D  A  +   +  F    E  
Sbjct: 369 DGTAGFVTTALDAFPEEFESH 389


>gi|323168546|gb|EFZ54226.1| NADH-quinone oxidoreductase subunit F domain protein [Shigella
           sonnei 53G]
 gi|323171966|gb|EFZ57610.1| NADH-quinone oxidoreductase subunit F domain protein [Escherichia
           coli LT-68]
          Length = 248

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 101/232 (43%), Positives = 138/232 (59%), Gaps = 7/232 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           P       YG     N   S    P +  R +S  +  G   +R  K+ + S
Sbjct: 202 P-SRQPPAYGA----NRPVSTTSKPCVTFRRSSLTAWSGIRTSRKVKMLAPS 248


>gi|110667102|ref|YP_656913.1| NAD-reducing hydrogenase, alpha subunit [Haloquadratum walsbyi DSM
           16790]
 gi|109624849|emb|CAJ51258.1| NAD-reducing hydrogenase, alpha subunit [Haloquadratum walsbyi DSM
           16790]
          Length = 502

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 171/424 (40%), Gaps = 42/424 (9%)

Query: 2   LTDQ-DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L D+  R+ +     +  ++ D  + G +  +  I     D + +  ++   RG G A  
Sbjct: 108 LQDESRRVLSGSGWRRPANVDDYDAAGGF--LKDI---DPDAVFDAGESIHGRGWGDACH 162

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            + +  ++M    ++    +V+NA  S PG   D  ++   P T+++G V  +  + A  
Sbjct: 163 DSPLTKTWMDADDAEGEAAIVINA-HSNPG---DSLLLSSVPFTILDGAVSLAQTVDASE 218

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLE 180
             I+         E+ + A+D                 + I +  G   Y   E T  LE
Sbjct: 219 IVIFASIADESTIETARTAID----------RYPNESSIAIDLVTGPAEYRAAEPTMALE 268

Query: 181 SLEGK-KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           ++EG  + + RL+PP P +VGLYG PT ++   ++A +   LR  +        +++  T
Sbjct: 269 AIEGNHRLEARLRPPGPESVGLYGRPTLIHTARTLAHLAVSLREDS-------IDSHPST 321

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           ++ SI G V     +E   + T     E  C       D + A   GG            
Sbjct: 322 RIMSIEGDVTDRTIIEVPETTTL----ETVCA-AADTTDGIKAACVGGRFGGL---AADL 373

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +D + L +   G     V V+     +++ +   + F   E+CG+C PCREGT  + 
Sbjct: 374 DISVDPETLIDANLGTE-GIVHVLSEDRCVVEFVGERAQFAAEENCGRCVPCREGTTQLA 432

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++  L  G  Q   ID   E+ + +   +IC  G  A  P Q  +  F    E   +  
Sbjct: 433 ELLRSLYDGTYQPEAID---ELIRVMTTTSICEFGVNAGRPTQTALNAFESEFEAHAN-- 487

Query: 420 HRCN 423
            RC 
Sbjct: 488 GRCP 491


>gi|331663799|ref|ZP_08364709.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit
           F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143]
 gi|331059598|gb|EGI31575.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit
           F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143]
          Length = 248

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 101/232 (43%), Positives = 138/232 (59%), Gaps = 7/232 (3%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+N+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++  PR KP
Sbjct: 142 NLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKP 201

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS 245
           P       YG     N   SI   P +  R +   +  G   +R  K+ + S
Sbjct: 202 P-SRQPPAYGA----NRPVSITSKPCVTFRRSLLTAWSGIRTSRKVKMLAPS 248


>gi|297162339|gb|ADI12051.1| oxidoreductase [Streptomyces bingchenggensis BCW-1]
          Length = 503

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 154/381 (40%), Gaps = 26/381 (6%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS--DRPHYLVVNADESEPGTCKD 94
               D ++   +   LRGRGGAGF    K + + +     D    +VVN  E EP   KD
Sbjct: 43  ALRADELVALAENIDLRGRGGAGFPFAKKVTAVIESAGRRDGRCAVVVNGSEGEPSCLKD 102

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
             ++ H PH +I+G V+A+ A+GA    I V        ESL AA+ E   SG       
Sbjct: 103 TALLLHTPHLVIDGAVLAATAMGADDVAIAVHR--PDVEESLSAAIAERGPSGP------ 154

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                 + V      ++ GE  A++  + G    P  +    ++ GL G PT ++N E+ 
Sbjct: 155 -----RVQVSVTDDRFVAGEGGAVINGISGAPAIPNGRKIRTSDSGLAGLPTLLSNTETF 209

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           A +    R GA  +   G     GT L ++ G       +E    +    ++E       
Sbjct: 210 AQLAVAARMGALPFRSVGLPTEPGTTLLTVGGKF----VMETPFGVPLSYVLELCGLTPG 265

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                   V+ GG     L    +    +  + +++  + LG  AV+ +  +T  +    
Sbjct: 266 ------QGVLVGGYHGKWLLPDSLASVNISRESMEKYNARLGAGAVLPIPENTCPVGETA 319

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394
           R++ +   E+  QC PC  G   +   + ++ +G  Q   +D +    ++++ R  C+  
Sbjct: 320 RVARWLAGETANQCGPCFIGLPALADAIGQVERGGGQAA-LDTVSAYIESVKRRGACSHP 378

Query: 395 DAAAWPIQGLIKNFRPLIEER 415
           D  A  +   +  F     E 
Sbjct: 379 DGTAGFVTTALDAFPDEFREH 399


>gi|222873938|gb|EEF11069.1| predicted protein [Populus trichocarpa]
          Length = 251

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 130/242 (53%), Gaps = 9/242 (3%)

Query: 178 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNR 237
           +LES+EG++G  R KPP PA  GL+G PT +NNV ++A VP IL RGA++Y GFG   +R
Sbjct: 1   MLESIEGRRGIVRSKPPLPAIEGLWGRPTVINNVITLATVPLILARGAAFYQGFGMGRSR 60

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GT  F ++G++     VE++  ++  EL+E   GG   G   + AV  GG     +    
Sbjct: 61  GTLPFQLAGNIARGGLVEKAFGLSLRELVEDFGGGTATG-RTVKAVQVGGPLGSYVAPAD 119

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
              A +DY+     G+ +G   ++V D + D+ +       F   ESCG+CTPCR G+  
Sbjct: 120 -WDAPLDYEAYAAKGNVVGHGGIVVHDDTADMAQLARYAMEFCAIESCGKCTPCRIGSTR 178

Query: 358 MMRVMERLVKGIAQKR-------EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
            + V++R+V+  +          ++ LL  +   ++  ++CA+G    +P++  + ++  
Sbjct: 179 GVEVIDRIVRAGSDPAAHAGHAGQVALLESLCDTMQHGSMCAMGGMTPYPVRSALNHYPQ 238

Query: 411 LI 412
             
Sbjct: 239 DF 240


>gi|313127332|ref|YP_004037602.1| NADH dehydrogenase subunit f [Halogeometricum borinquense DSM
           11551]
 gi|312293697|gb|ADQ68157.1| NADH dehydrogenase subunit F [Halogeometricum borinquense DSM
           11551]
          Length = 513

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 87/398 (21%), Positives = 155/398 (38%), Gaps = 34/398 (8%)

Query: 30  DNVDKILEKGRDWIINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
           ++V   +    + +  E+   GL  RGRG A     +   +     +D    LVVNA+++
Sbjct: 136 ESVLDAVSDDSESVCTEIHRIGLLGRGRGDARADRPVAEGWATARKTDGDTVLVVNANDA 195

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           +     D  ++  +   +++  +  +  + A    +Y +   +       AA       G
Sbjct: 196 DERNRTDSTLVEGDAGGVVDAAMAVAHLVEAEDVIMYAQTGSMAAERLSAAASRYRDEYG 255

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK-KGQPRLKPPFPANVGLYGCPT 206
                          V  G   YI GE T  LESLEG  + + RL+PP P   GLYG PT
Sbjct: 256 DAP-----------QVAVGPERYIAGEPTMALESLEGNDRLEARLRPPGPETHGLYGRPT 304

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            ++   ++  V   + R   + +    + + GT++ +++G V+ P TVE +         
Sbjct: 305 VIHTPRTLLQVREAILRPEEFDAD---DADPGTRVVTVTGDVDSPATVELTTGAPLR--- 358

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI-VMDR 325
                            I GG         +     +    L   G+ LGT  V+ +   
Sbjct: 359 ---AAAAAVDRTETKMAIVGGQFGGV---TRHLDHTLSAPALS--GANLGTEGVVELFGD 410

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
               +  +   + F   E+CG+C PCREGT  +  ++  +  G       D L E+++ +
Sbjct: 411 DRCALATVGSRARFASEENCGRCVPCREGTTQLTDLLRDIYAGDYDD---DTLRELTRTM 467

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
              + C  G +AA  ++  +  F    E     + RC 
Sbjct: 468 RNTSTCDFGRSAARTVETAMAAFEAEFEAH--THGRCP 503


>gi|268323918|emb|CBH37506.1| putative Fe-only hydrogenase, C-terminus [uncultured archaeon]
          Length = 211

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 87/216 (40%), Positives = 119/216 (55%), Gaps = 6/216 (2%)

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           G PT +NNVE++  VPTI+ +G  WYS  G  N  GTKLF ISGHVN P   E  M +T 
Sbjct: 2   GKPTAINNVETLCNVPTIIEKGGDWYSKIGSPNAPGTKLFCISGHVNKPGVYEIPMELTL 61

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            ELI+ + GG++G      AV+PGG S   L         +DY  + E GS LG+A+VIV
Sbjct: 62  RELIDNYGGGVKG---KFKAVLPGGVSSSLLTD---LDVKLDYKSVAEAGSMLGSASVIV 115

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           ++  + I+        F+ HESCGQCTPCREGT     ++ R   G  ++ E+++L E+ 
Sbjct: 116 INGDSSIVDVTKNSMEFFVHESCGQCTPCREGTRTANAIIGRFANGEGREEELEILLELG 175

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
             +   + C LG AA       IK FR    +R+  
Sbjct: 176 DVMYDTSRCGLGQAAMNITTSAIKMFRDEFMQRVKN 211


>gi|320010870|gb|ADW05720.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Streptomyces flavogriseus ATCC 33331]
          Length = 524

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 154/381 (40%), Gaps = 16/381 (4%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
              + +    ++  LRGRGGAGF  G K   + K          +V+N  E EP   KD 
Sbjct: 44  MTGERLAELAESVSLRGRGGAGFPFGKKLRAVAKASIRRGVRPVVVINGSEGEPACRKDT 103

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G ++A+ A+GA    + V             A          G + + 
Sbjct: 104 VLLNRAPHLILDGALLAAEALGARTLVVAVTRNSTEMSVRSALAER--------GLSDRR 155

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G  +   V       + GE +A++ ++ G    P  +    A  G+ G PT ++N E+ A
Sbjct: 156 GQHLRARVVRTPERMVSGEASAVIRAVNGGPALPPGRRERAAESGVAGAPTLLSNAETYA 215

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y   G  +  GT L ++SG V  P  VE    +    +++        
Sbjct: 216 QLAVAARLGPRRYGHTGLADEPGTVLLTVSGAVARPMVVEVPTGVPLRYVLQLAGA---- 271

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG     + +  +  A++    L  +G  LG  AV+ +   T  I    R
Sbjct: 272 -PPLPQGVLTGGYHGNWIDSTALHDAVVSRASLAAVGGALGAGAVLPIGPETCPIGESLR 330

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           ++ +   E+ GQC PC+ G       +  ++ G      ++ L EV++ ++GR  C   D
Sbjct: 331 IANWLAAETAGQCGPCKLGLPAAAGGLSDVLNGGG-PAALEALREVTQAVKGRGACKHPD 389

Query: 396 AAAWPIQGLIKNFRPLIEERI 416
            +A  +   +  F   +   +
Sbjct: 390 GSARFLSSTLSAFTDDLAAHV 410


>gi|218661814|ref|ZP_03517744.1| NADH-ubiquinone oxidoreductase protein, chain F [Rhizobium etli
           IE4771]
          Length = 187

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/190 (41%), Positives = 109/190 (57%), Gaps = 3/190 (1%)

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPA 295
           + G KL+ +SG V+ P   E  M I   EL+E H GG+      + AVIPGG S P +P 
Sbjct: 1   SPGPKLYCLSGQVHKPGLYELPMGIPLRELVENHAGGV-LPGRRIKAVIPGGVSAPVIPE 59

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGT 355
             +    MD+D L   GS LG+A VIV+D ST ++K   R+  F+ HESCG+CTPCREG 
Sbjct: 60  HGLE-VRMDFDSLAAAGSMLGSAGVIVIDDSTCMVKVATRIIEFFHHESCGKCTPCREGL 118

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            W ++V+ R+  G     +++ L  + K I G T CALGD AA  ++  + +FR      
Sbjct: 119 NWTVKVLRRIEAGEGAAGDLEQLEMLCKGIFGNTFCALGDGAAMGLRAALAHFRDEFVAH 178

Query: 416 IDQYHRCNFQ 425
           I++ HRC F 
Sbjct: 179 IEE-HRCPFH 187


>gi|238596288|ref|XP_002394009.1| hypothetical protein MPER_06171 [Moniliophthora perniciosa FA553]
 gi|215462351|gb|EEB94939.1| hypothetical protein MPER_06171 [Moniliophthora perniciosa FA553]
          Length = 245

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 108/203 (53%), Positives = 130/203 (64%), Gaps = 20/203 (9%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTN Y      L  + SRG W     IL KG  WII  +K SGLRGRGGAGF 
Sbjct: 37  LKDQDRIFTNAYCRHDHGLKGAQSRGDWHRTKDILLKGDSWIIQTIKDSGLRGRGGAGFP 96

Query: 62  TGMKWSFMPKVCSDRPH---YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           +G+KWSFM K          YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+ A
Sbjct: 97  SGLKWSFMNKPNWQNDKRPRYLVVNADEGEPGTCKDREIMRGDPHKLVEGCLVAGRAMNA 156

Query: 119 HCAFIYVRGEFIRE----------------RESLQAAVDECYASGLLGSNS-KLGYDVDI 161
           + A+IY+RGEF +E                   +Q A++E YASGL+G N+   GY  D+
Sbjct: 157 NAAYIYIRGEFYQEGTYSGFSLHIILTVCPASHVQQAINEAYASGLIGKNACGSGYSFDV 216

Query: 162 IVHHGAGAYICGEETALLESLEG 184
            +H GAGAYICGEETAL+ESL G
Sbjct: 217 YLHRGAGAYICGEETALIESLXG 239


>gi|284172809|ref|YP_003406191.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
 gi|284017569|gb|ADB63518.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
          Length = 507

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 89/389 (22%), Positives = 152/389 (39%), Gaps = 36/389 (9%)

Query: 41  DWIINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           +     V   GL  RGRG A     +   +     +D    +V NA+E+      D  ++
Sbjct: 141 ERTAETVTDIGLLGRGRGDAAADDPVTDVWETARDADGDPVVVANANETRDEQRADEVLL 200

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
              P  +++G    +  +GA  A +Y+  E       L+ A+D    +G L         
Sbjct: 201 GGAPIAVLDGIAAVAEYVGADDAVVYLNEEDSHLHRHLREAIDAV--AGEL--------P 250

Query: 159 VDIIVHHGAGAYICGEETALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           +   +  G   Y  G  TA LE++EG  + +PRL+PP PA  GLYG PT ++   + A V
Sbjct: 251 IVPQLVAGPDEYRAGAPTAALEAMEGADRIEPRLQPPSPAEYGLYGRPTVIHTPRTFAQV 310

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF---DELIEKHCGGIR 274
              +R      +      + GT+L +++G V  P T+E     +     + +E       
Sbjct: 311 RRAIRDSD---AFDADAADPGTRLITVAGDVADPATIELPSDSSLSVVRDAVELTG---- 363

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
               +      GG       +            L   G G     V +++    ++  + 
Sbjct: 364 ----SFKMACVGGVLGGITRS---LDVAPTAQSLAAAGLGTD-GVVELLNDDRCVVADVG 415

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394
             + F   E+ G+C P REGT  +  ++  + +G     E D + E+ + +   + C +G
Sbjct: 416 ERARFASTENSGRCVPGREGTKQLTELLRDVYQGSL---EADTIRELGRVMARSSNCQIG 472

Query: 395 DAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             A  P+   I  F P      D   RC 
Sbjct: 473 AHAPRPVTTAIDEFEPEFHAHAD--GRCP 499


>gi|213618598|ref|ZP_03372424.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 220

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 99/202 (49%), Gaps = 3/202 (1%)

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           P IL  G  WY    +  + GTKL   SG V  P   E        E++E + GG+R G 
Sbjct: 1   PAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTIAREILEDYAGGMRDGL 60

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               A  PGG+    L    +    M+++ + + GS LGTA  + +D    ++  +  L 
Sbjct: 61  K-FKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEIGMVSLVRNLE 118

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDA 396
            F+  ESCG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    
Sbjct: 119 EFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPG 178

Query: 397 AAWPIQGLIKNFRPLIEERIDQ 418
           A  P+Q  IK FR   E  I Q
Sbjct: 179 AVEPLQSAIKYFREEFEAGIKQ 200


>gi|73982777|ref|XP_864298.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 4 [Canis familiaris]
          Length = 210

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/162 (59%), Positives = 116/162 (71%), Gaps = 1/162 (0%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+IMRH+PH L+EGC++   A+GA  A
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAA 154

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDII 162
           +IY+RGEF  E  +LQ A+ E Y +GL+G N+   GYD D+ 
Sbjct: 155 YIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVQ 196


>gi|218671476|ref|ZP_03521146.1| formate dehydrogenase protein, beta subunit [Rhizobium etli GR56]
          Length = 283

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/187 (42%), Positives = 101/187 (54%), Gaps = 3/187 (1%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAG 59
            L  Q R+ F     +   SLSD  + G    + + +      I+ EV  SGLRGRGGAG
Sbjct: 98  FLKQQTRLTFARCGVIDPLSLSDYEAHGGLAGLRRAVSMAPAEIVKEVTDSGLRGRGGAG 157

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+KW  +     D   Y+V NADE + GT  DR IM  +P  LIEG  I+  A GA 
Sbjct: 158 FPTGIKWKTVLDAAGD-RKYIVCNADEGDSGTFADRMIMEGDPFVLIEGMAISGLATGAT 216

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETAL 178
             F+Y R E+     ++  AV     +G+LG +    G   DI V  GAGAY+CGEETAL
Sbjct: 217 KGFVYTRSEYPHAIAAMSEAVAIARQAGILGPSVLGSGRAFDIEVRTGAGAYVCGEETAL 276

Query: 179 LESLEGK 185
           L SLEGK
Sbjct: 277 LNSLEGK 283


>gi|331663798|ref|ZP_08364708.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit
           F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143]
 gi|331059597|gb|EGI31574.1| NADH-quinone oxidoreductase subunit F (NADHdehydrogenase I subunit
           F) (NDH-1 subunit F) (NUO6) [Escherichia coli TA143]
          Length = 213

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 3/195 (1%)

Query: 225 ASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI 284
             WY    +  + GTKL   SG V  P   E     T  E++E + GG+R G     A  
Sbjct: 1   MEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLK-FKAWQ 59

Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES 344
           PGG+    L    +    M+++ + + GS LGTA  + +D   +++  +  L  F+  ES
Sbjct: 60  PGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARES 118

Query: 345 CGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQG 403
           CG CTPCR+G  W ++++  L +G  Q  +I+ L ++ + +  G+T CA    A  P+Q 
Sbjct: 119 CGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQS 178

Query: 404 LIKNFRPLIEERIDQ 418
            IK FR   E  I Q
Sbjct: 179 AIKYFREEFEAGIKQ 193


>gi|238060461|ref|ZP_04605170.1| oxidoreductase [Micromonospora sp. ATCC 39149]
 gi|237882272|gb|EEP71100.1| oxidoreductase [Micromonospora sp. ATCC 39149]
          Length = 382

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 157/364 (43%), Gaps = 24/364 (6%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
                ++   +A  L+G+GGAGF    K   + + C   D    +VVNA E EP + KD+
Sbjct: 41  MEPANLLRLAEAIQLKGKGGAGFPFARKLRAVLESCERQDASAIVVVNATEGEPASWKDK 100

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G  + ++A+ A    I V  + +  R SL  A+ E             
Sbjct: 101 VLLARAPHLILDGAALVAYALDADEIVIGVADDDV-GRPSLTEALQERR----------- 148

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              V   +      +I GE  AL+  + G    P       ++ G+ G PT ++N E+ A
Sbjct: 149 -MPVPTSMVTVPDRFISGEGGALVNGINGLPHIPPGTKKRSSDSGVNGLPTLLSNAETYA 207

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y+  G ++  GT L +++G    P  VE +      +++E        
Sbjct: 208 QLAVAARLGPYEYAALGTDDEPGTLLLTVTGAAKRPAVVECAAGTPLRDILEL------C 261

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
              +   V+ GG     + A   + A +   GL  +G  LG   ++ + R T  +    +
Sbjct: 262 EVPDGPGVLMGGYHGKWITAEAAQRAEVSRKGLTAVGGTLGAGIIVPLGRDTCPLGEAAQ 321

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           +  +   ES GQC PC+ G   + R ++  V G A    I+++   + +++GR  C+  D
Sbjct: 322 VVRYLAGESAGQCGPCKMGLPDLARAVDLAVSGSAP---IEIVRAAAGDVKGRGACSHPD 378

Query: 396 AAAW 399
             A 
Sbjct: 379 GTAR 382


>gi|289612446|emb|CBI60107.1| unnamed protein product [Sordaria macrospora]
          Length = 175

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 121/163 (74%), Positives = 136/163 (83%)

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           MSI F ELIEKHCGG+RGGWDNLL VIPGGSSVP + A  +  A MD+DGLK +GSGLGT
Sbjct: 1   MSIPFRELIEKHCGGVRGGWDNLLCVIPGGSSVPLVKAEHIIDAPMDFDGLKAVGSGLGT 60

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDL 377
           AAVIVMD+STD+++AI RLS FYKHESCGQCTPCREGTGWM RVMERL  G A   EID+
Sbjct: 61  AAVIVMDKSTDVVRAISRLSYFYKHESCGQCTPCREGTGWMWRVMERLRTGDADISEIDM 120

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           L +V+K +EG TICALGDAAAWPIQGLIKNFRP IE RI++  
Sbjct: 121 LQQVTKQVEGHTICALGDAAAWPIQGLIKNFRPEIERRINEKR 163


>gi|327243025|gb|AEA41131.1| putative bifurcating [FeFe] hydrogenase subunit 2 [Clostridium
           butyricum]
          Length = 199

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/199 (40%), Positives = 118/199 (59%), Gaps = 4/199 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEVKASGLRGRGGA 58
              +Q R+   +   +  +S+ + ++   +  V K L +     II+E+  S LRGRGG 
Sbjct: 1   FYKNQTRVALEHCGHINAESIDEYIALDGYKAVTKALFDMTPSNIIDEISESSLRGRGGG 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+KWS + K  ++   Y+V N DE +PG   DR +M  EPH +IEG +IA  A GA
Sbjct: 61  GFPTGIKWSQVYKQ-NENDKYIVCNGDEGDPGAFMDRSMMEGEPHRIIEGMIIAGIATGA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETA 177
           H  +IYVR E+    E L+ A+++    GLLG+N    G+D +I +  GAGA++CGE +A
Sbjct: 120 HKGYIYVRAEYPLAVERLEKAIEQAENKGLLGNNILNSGFDFNIRISKGAGAFVCGEGSA 179

Query: 178 LLESLEGKKGQPRLKPPFP 196
           L  S+EG +G PR+KPP  
Sbjct: 180 LTTSIEGSRGMPRVKPPRT 198


>gi|302869187|ref|YP_003837824.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Micromonospora aurantiaca ATCC 27029]
 gi|315504336|ref|YP_004083223.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Micromonospora sp. L5]
 gi|302572046|gb|ADL48248.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Micromonospora aurantiaca ATCC 27029]
 gi|315410955|gb|ADU09072.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Micromonospora sp. L5]
          Length = 488

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 159/380 (41%), Gaps = 24/380 (6%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
                ++   +A  L+G+GGAGF    K   + + C   D    +VVNA E EP + KD+
Sbjct: 42  MEPAALLRLAEAIDLKGKGGAGFPFARKLRAVLESCERQDLGAVVVVNATEGEPASWKDK 101

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            ++   PH +++G  +A+FA+ A    I V  + +  R SL  A+ E             
Sbjct: 102 VLLTRAPHLILDGAALAAFALDAEEIVIGVADDDV-GRPSLTEALQERR----------- 149

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              V   +      +I GE  AL+  + G    P       ++ G+ G PT ++N E+ +
Sbjct: 150 -MPVPTTIVTVPHRFISGEGGALVNGINGLPHIPPGTKKRSSDSGVGGLPTLLSNAETYS 208

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y+  G ++  GT L +++G    P  VE +      E+++        
Sbjct: 209 QLAVAARIGPYEYAALGTDDEPGTVLLTVTGSAKRPAVVECAAGTPLREILDL------C 262

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  ++ GG     + A     A +   GL  +G  LG   ++ +   T  +    +
Sbjct: 263 EVPPGPGILMGGYHGKWITAAAAERAEVSRKGLTAVGGTLGAGIIVPLGADTCPLGEAAQ 322

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           +  +   ES GQC PC+ G   + R ++  V G A    ++L+   + +++GR  C+  D
Sbjct: 323 VVRYLAGESAGQCGPCKMGLPDLARSVDLAVSGSAP---VELVRAAAGDVKGRGACSHPD 379

Query: 396 AAAWPIQGLIKNFRPLIEER 415
             A      ++ F   +   
Sbjct: 380 GTARFALSAMEVFADDLRLH 399


>gi|323718238|gb|EGB27418.1| hypothetical protein TMMG_02285 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 217

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 103/188 (54%), Positives = 131/188 (69%), Gaps = 7/188 (3%)

Query: 16  QGKSLSDSMSRG---HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
           +  +L+          +  + K L    D +I+ VK SGLRGRGGAGF+TG KWSF+P+ 
Sbjct: 20  ESWTLATYQRHDRYRGYQALQKALTMPPDDVISIVKDSGLRGRGGAGFATGTKWSFIPQG 79

Query: 73  CSD---RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEF 129
            +    +PHYLVVNADESEPGTCKD  +M   PH LIEG +IA++AI AH AF+YVRGE 
Sbjct: 80  DTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEV 139

Query: 130 IRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +     L  AV E YA+G LG N    G+D++++VH GAGAYICGEETALL+SLEG++GQ
Sbjct: 140 VPVLRRLHNAVAEAYAAGFLGRNIGGSGFDLELVVHAGAGAYICGEETALLDSLEGRRGQ 199

Query: 189 PRLKPPFP 196
           PRL+PP P
Sbjct: 200 PRLRPPSP 207


>gi|269125013|ref|YP_003298383.1| NADH dehydrogenase (quinone) [Thermomonospora curvata DSM 43183]
 gi|268309971|gb|ACY96345.1| NADH dehydrogenase (quinone) [Thermomonospora curvata DSM 43183]
          Length = 505

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/408 (22%), Positives = 158/408 (38%), Gaps = 51/408 (12%)

Query: 30  DNVDKILEKGR-DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS-------------- 74
             +   L     + ++   +A  +RGRGGA F    K   + K                 
Sbjct: 30  RALHGALAVPTLEELLKITEAVDIRGRGGAAFPFARKLMAVAKQVGRPGDVDDFLLPGEE 89

Query: 75  -------DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                   +   +VVN  E EPG+ KD+ ++   PH +++G  IA+ A+G     I +  
Sbjct: 90  DDHRGRRQKRAVVVVNGSEGEPGSKKDKVLLTRNPHLVLDGAQIAATALGTRDIVIAIED 149

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           E      S++AA+ E                +   V      +I GE  A++ ++ G+  
Sbjct: 150 E--TAARSMRAAIVERR--------------MPAEVVRLPERFISGESGAVIRAINGETP 193

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
            P  +    A  G+ G PT ++N E+ A +  ++  G   Y+  G ++  GT L ++ G 
Sbjct: 194 IPPGRKVRAAESGVDGRPTLLSNTETFAQLAVLVSLGPDLYASVGTDSEPGTTLLTVGGT 253

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
                  E  +      +        + G      V+ GG     +     R AI+   G
Sbjct: 254 TVV----ECPLGTPLASVF------AQCGVQPGQGVLVGGYHGEWITPEAARTAIVSRAG 303

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
            + +G  LG   ++ +   T  ++ + R++ +   +S GQC PCR G   + R +E LV 
Sbjct: 304 FQAVGGSLGAGIILPLPEGTCPLREVARIASYMAGQSAGQCGPCRLGLPDLYRSLEALVD 363

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           G       +L+   +    GR  C+  D  A      +  F   IE  
Sbjct: 364 GSGSP---ELVRRAAGIGRGRGACSHPDGTARFALSALNTFARDIEIH 408


>gi|169335144|ref|ZP_02862337.1| hypothetical protein ANASTE_01551 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257882|gb|EDS71848.1| hypothetical protein ANASTE_01551 [Anaerofustis stercorihominis DSM
           17244]
          Length = 357

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 151/401 (37%), Gaps = 67/401 (16%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
              +    L D ++ G ++   K++    D +I+ +K + L  R         +WS    
Sbjct: 21  CGAVNPICLDDYVAFGGYEASSKVVNNEVD-VISILKDANLVARKKLNELCADRWS---- 75

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
                     V  +  +P    D  +    PH ++E  +I      A    I V  E   
Sbjct: 76  ------GAETVVCETEDPMATLDLKVQTEAPHVIVEAMIIFMHVNNAKKGVIVVNDE--L 127

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
               L  AV +   +GL         D DIIV                 S++G K     
Sbjct: 128 AYNRLNKAVTDAKNAGL--------NDKDIIVSKV--------------SIDGLKE---- 161

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
                             N + +A V  I++        +     +G K  +I G V  P
Sbjct: 162 ------------------NAQLLANVVAIVQN------SYKPAPAKGLKGVAIGGKVKNP 197

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     T+ +LIE+  GG  G    +     G      L +  +    +++  L   
Sbjct: 198 GVYEIEDGTTYRKLIEEIAGGATGKVKAIKV---GAPYGEYLSSD-ILDEKINFMSLMMN 253

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
           G   GTA ++V+D STD+ K I     F  + SCG+C PC+ GT  M  +++ +VKG A 
Sbjct: 254 GMVRGTALIVVLDESTDMAKEISDYLGFLLNVSCGKCFPCKVGTKRMDEMVKEVVKGNAT 313

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           K   +++  ++ N+   T+C +G   A P+   ++NFR   
Sbjct: 314 KENYNMIKSIAVNMNIGTLCPIGQKGAVPVLTALENFRDDF 354


>gi|325523856|gb|EGD02083.1| NADH dehydrogenase (quinone) [Burkholderia sp. TJI49]
          Length = 292

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/195 (40%), Positives = 107/195 (54%), Gaps = 3/195 (1%)

Query: 2   LTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+ F  +      S+ D +       +   L    D     +  SGLRGRGGA F
Sbjct: 99  LARQQRLTFARIGLTDPLSIDDYLRHDGLAGLKNALALDGDAACELLIESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  + +  Y+V NADE + GT  DR IM  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGIKWRTVRQARA-KQKYIVCNADEGDSGTFSDRLIMESDPYCLIEGMIIAGIATGATI 217

Query: 121 AFIYVRGEFIRERESLQAAVDECYASGLLGSN-SKLGYDVDIIVHHGAGAYICGEETALL 179
             IYVR E+     +L+AA++    +G LG +     +  ++ V  GAG+Y+CGEETALL
Sbjct: 218 GHIYVRSEYPDAIATLEAAIERAREAGWLGEHVLGSAHAFELHVAKGAGSYVCGEETALL 277

Query: 180 ESLEGKKGQPRLKPP 194
           ESLEGK+G  R KPP
Sbjct: 278 ESLEGKRGVVRAKPP 292


>gi|300709462|ref|YP_003735276.1| putative NADH dehydrogenase I, F subunit [Halalkalicoccus jeotgali
           B3]
 gi|299123145|gb|ADJ13484.1| putative NADH dehydrogenase I, F subunit [Halalkalicoccus jeotgali
           B3]
          Length = 522

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 153/381 (40%), Gaps = 30/381 (7%)

Query: 38  KGRDWIINEVKASGL--RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           +    +  +V A GL  RGRG A     +  ++     ++    +VVN +E +P    D+
Sbjct: 144 EDPGGLCEDVDALGLLGRGRGDARHDAPLASAWEATREAEGEPVVVVNGNEPDPAADADQ 203

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +++  P  +++G +  + A+GA    +Y         E  + A D    +  LG+    
Sbjct: 204 LLLKSAPVAVLDGALTVAAAVGATDVVVYANEADDLALERCETAADAIDDA--LGA---- 257

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                + +  G   Y  GE T  LESLEG  + + R  PP P   GL+G PT ++   ++
Sbjct: 258 ----TVQIASGPDEYRAGEPTMALESLEGADRIEARRTPPGPEEHGLFGRPTAIHTPRTL 313

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           A + T L    S+ +    + + GT++ ++    +   TVE S   +    +        
Sbjct: 314 AQLRTALLSPESFDAD---DADPGTRIVTVVDDADR-ATVELSTGSSLQTAL------GA 363

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              ++      GG         +      +   L     G    AV + D +   +    
Sbjct: 364 VPAEDFKLACVGGCFGGF---TRTLDTPANAQSLDSANLGT-NGAVELFDGTRCTVALAG 419

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394
           + + F +  +CG+C PCREG+  ++ ++  +  G      I    E+++ +   + C  G
Sbjct: 420 KRARFAREANCGRCVPCREGSKQLVALLREVYDGEYDSGSI---RELTRVMRRTSTCYFG 476

Query: 395 DAAAWPIQGLIKNFRPLIEER 415
            AA+ P+   +  F       
Sbjct: 477 RAASRPVTTAMDAFETEFTAH 497


>gi|55376869|ref|YP_134720.1| putative NADH dehydrogenase I, F subunit [Haloarcula marismortui
           ATCC 43049]
 gi|55229594|gb|AAV45014.1| putative NADH dehydrogenase I, F subunit [Haloarcula marismortui
           ATCC 43049]
          Length = 507

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 144/371 (38%), Gaps = 34/371 (9%)

Query: 57  GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
            A     +  ++     +D    +V NA+++      D  ++   P  +++G    +  +
Sbjct: 159 DAAADEPVADTWETASETDGDPVVVCNANDASDLPTGDDTLLSGAPMAVLDGIAAVAEYV 218

Query: 117 GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEET 176
            A  A +YV       +  L+ A+D    +            V   +  G   +  GE T
Sbjct: 219 DAGDAVVYVNESQTDVQADLREAIDAAADT----------LPVVPQLVAGPDEFRAGEPT 268

Query: 177 ALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           A LE+LEG  + +PRL+PP PA  GLYG PT V+   + A V   +    S  +      
Sbjct: 269 AALEALEGADRIEPRLQPPSPAKRGLYGRPTVVHTPRTFAQVQQAVADPGSVDAD---AA 325

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITF---DELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
           + GT++ +++G V    TVE   S +     + +E           +      GG     
Sbjct: 326 DPGTRIVAVAGDVADSATVELRSSASLAAVRKAVEMDG--------SFKMACVGGVLGGV 377

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
             +  M         L+  G G     V + D     ++ + + + F   E+ G+C P R
Sbjct: 378 TRSLDMAPT---AQSLRAAGLGT-NGVVELFDTGRCTVETVGKRARFASMENSGRCVPGR 433

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           EGT  +  ++  +  G     E D + E+S+ +   + C  G  A  P+   I  F P  
Sbjct: 434 EGTKQLAELLRDIYDGSF---ENDKIRELSRVMRQSSNCQTGAHAPRPVTTAIDEFEPEF 490

Query: 413 EERIDQYHRCN 423
               D +  C 
Sbjct: 491 RAHTDGH--CP 499


>gi|330469511|ref|YP_004407254.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Verrucosispora maris AB-18-032]
 gi|328812482|gb|AEB46654.1| respiratory-chain NADH dehydrogenase domain 51 kda subunit
           [Verrucosispora maris AB-18-032]
          Length = 488

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 160/380 (42%), Gaps = 24/380 (6%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDR 95
                ++   +   L+G+GGAGF    K   + + C   D P  +VVNA E EP + KD+
Sbjct: 43  MEPSSLLRLAEGIQLKGKGGAGFPFARKLRAVLESCERQDLPPVVVVNATEGEPASWKDK 102

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            I+   PH +++G  +A+FA+ A    + V  + I  R+SL  A++E             
Sbjct: 103 VILTRAPHLILDGAALAAFALDAEEIVLCVADDLI-GRDSLMEALEERR----------- 150

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
              V   V      +I GE  AL+  + G    P       ++ G+   PT ++N E+ +
Sbjct: 151 -MPVPTSVVTVPHRFISGEGGALVNGINGLPHIPPGTKKRSSDSGVNNLPTLLSNAETYS 209

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G   Y+  G ++  GT L SI+G       VE +      E++E        
Sbjct: 210 QMAIAARLGPYEYAALGTDDEPGTVLLSITGAAKRHAVVECAAGTPLREILEL------C 263

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  ++ GG     +       A +   GL  +G  LG   ++ +   T  +    +
Sbjct: 264 EVPEGPGILMGGYHGKWITWEAANKAEVSRKGLAAVGGTLGAGIIVPLANDTCPLGEAAQ 323

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           +  +   ES GQC PC+ G   + R ++  V G A    ++++   + +++GR  C+  D
Sbjct: 324 VVRYLAGESAGQCGPCKRGLPDLARAVDLAVSGSAP---VEVVRAAAGDVKGRGACSHPD 380

Query: 396 AAAWPIQGLIKNFRPLIEER 415
             +      ++ F   +++ 
Sbjct: 381 GTSRFALSAMEVFAEDLKKH 400


>gi|330945472|gb|EGH47027.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 204

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/175 (46%), Positives = 111/175 (63%), Gaps = 2/175 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EP T KDR +M   PH L+EG +I++ A+ A+  +I++RGE++   +
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVTAAK 149

Query: 135 SLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
            L  AV E  A+GLLG N    G+D ++ VH GAG YICGEETAL+ SLEG++G 
Sbjct: 150 HLNRAVAEAKAAGLLGKNILGTGFDFELFVHTGAGRYICGEETALINSLEGRRGN 204


>gi|331694618|ref|YP_004330857.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
 gi|326949307|gb|AEA23004.1| NADH dehydrogenase (quinone) [Pseudonocardia dioxanivorans CB1190]
          Length = 424

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 138/336 (41%), Gaps = 19/336 (5%)

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           N  E EP + KD  ++ H PH +++G   A+ A+GA  A + V          L+AAV  
Sbjct: 87  NGCEGEPASRKDAVLLHHSPHLVLDGLAAAADALGADDAILCVHTGEP-GLGDLRAAVAT 145

Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
                           V   V      Y+  EE+AL+  L G+   P   PP PA  G+ 
Sbjct: 146 RDDR------------VPARVVTVPRRYVASEESALVGYLSGRPALPTTTPPRPAERGVA 193

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
           G PT V+NVE++A +  I   G  W+   G  +  GT L +  G +  P   E     T 
Sbjct: 194 GRPTLVDNVETLAHLALIAHHGPDWFRRAGTSDLPGTLLVTTGGALRDPGVDEVPGGTTV 253

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
             ++E   G      + + A++ GG     L    +    + ++ ++  GS LG   ++ 
Sbjct: 254 QAVLELAGG----PAEPVQAILSGGYGGAWLGIDALA-TPLTHEAMRSAGSALGVPTLLA 308

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE-IDLLYEV 381
           +      +     L      ES GQC PCR G   + + +  +V G     +    L   
Sbjct: 309 LPTRVCGLGQTAHLLDHLAAESAGQCGPCRFGLPAIAQDLRAIVHGSPGAPDAHARLQRR 368

Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
              ++GR  CA  D +   ++  ++ FR  + + + 
Sbjct: 369 LGTVDGRGACAHPDGSVRLVRSALRVFRHDLHDHLR 404


>gi|111223357|ref|YP_714151.1| putative oxidoreductase [Frankia alni ACN14a]
 gi|111150889|emb|CAJ62594.1| Putative oxidoreductase [Frankia alni ACN14a]
          Length = 347

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 145/351 (41%), Gaps = 22/351 (6%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             +V NA E EP + KD  ++   PH +++G  +A+ A+GA  AF+YV+          Q
Sbjct: 2   PVVVANAAEGEPESAKDATLLAVAPHLVLDGVQLAAEAVGAADAFVYVKAGSAAAAAVRQ 61

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A  +   A+G             I V      ++ GE +A++ +L+G   +PR      A
Sbjct: 62  AVAER-RAAGWD--------RCGIEVREAPATFLAGEASAVVAALDGAAARPRAHWRPLA 112

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + GL G PT V+NVE++A + TI R GA W+   G  +  GT L +++G V  P  VE  
Sbjct: 113 DAGLRGRPTLVHNVETLAHLATIARWGAPWFRSVGTADEPGTLLVTVTGAVAGPGVVEVP 172

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
                  L+    G +    + + AV  GG +   LP        M  +GL   G+  G 
Sbjct: 173 CGTPLGALVGSRGGAV----EPVGAVRVGGYAGTWLPGAVAAAVPMSREGLASWGATPGP 228

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV---------KG 368
             V V+      +    R+  +   ++ GQC PC  G   + R +  +           G
Sbjct: 229 GIVSVLPAHACGLAETARIVAYLAGQNAGQCGPCVSGLPQLARSVAGVAGIAGRDTAPDG 288

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
               +       ++  + GR  C   D  A  +   ++ F   I      +
Sbjct: 289 ENPTQAASRALRLAALVAGRGACHHPDGVARLVHSALRTFAADIRAHAQGH 339


>gi|119718053|ref|YP_925018.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Nocardioides sp. JS614]
 gi|119538714|gb|ABL83331.1| NADH dehydrogenase subunit F [Nocardioides sp. JS614]
          Length = 412

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/363 (21%), Positives = 148/363 (40%), Gaps = 28/363 (7%)

Query: 54  GRGGAGFSTGMKWSFMP-KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           GRGGA F   +K      +    R   +VVN  E EP + KD  +    PH +++G V  
Sbjct: 59  GRGGAAFPFEVKLRTAADRSRQGRRPVVVVNLSEGEPASAKDSALALTRPHLVLDGAVAT 118

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172
           ++A+GA    + V  E      +++AA+ E                +   +H   G ++ 
Sbjct: 119 AYALGARELHVVVPQERPLVGTAIRAALAERRDR------------LRTHLHTAQGRFVA 166

Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232
           G+  A+LE + G+   P       A  G  G PT ++N E+ A V  ++  G   Y+  G
Sbjct: 167 GQARAVLELMAGRPNLPVTAWSPEAVAGHRGRPTLLSNAETWAQVGRLVLAGEERYAALG 226

Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
             +  GT L ++S   +    VE  +   + +++ +   G         +++ GG     
Sbjct: 227 SADEPGTTLLTLSAATST--VVEVELGSPWRDVLPEAWAG--------RSLLVGGFHGAW 276

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           +P   +    +  D ++   + LG    +V+      +    R+  +   +S  +C PC 
Sbjct: 277 VPWATLVAGRVSVDAMRAAETPLGAG--VVVAPRGCPVAFTARVVDYLAAQSARRCGPCL 334

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            G   + R ++ +V G       + +  ++  + GR  CA  D  A  ++ ++  F   +
Sbjct: 335 NGLPALARAVQEVVDGAGHP---ERVEGLAALVTGRGACAHPDGTARLVRSMLATFPDEV 391

Query: 413 EER 415
              
Sbjct: 392 TRH 394


>gi|284167379|ref|YP_003405657.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
 gi|284017034|gb|ADB62984.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
          Length = 507

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 139/372 (37%), Gaps = 28/372 (7%)

Query: 53  RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
           RGRG A        ++     +D    +VVNA+E +     DR ++   P  +++G    
Sbjct: 155 RGRGDAIADEPAIDAWERARETDGDPLIVVNANEPDDRQQADRTLLAGAPIAVLDGVAAV 214

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172
           +  +GA  A +Y+       +  ++ A        L      +          G   Y  
Sbjct: 215 AEYVGAEDAVVYLNEHETTLQRHVRQA-ANAIEDELPVVPDVV---------VGPDEYRA 264

Query: 173 GEETALLESLEG-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
           G  TA LE++EG  + +PRL+PP PA  GLYG PT V+   + A V   +    S  +  
Sbjct: 265 GAPTAALEAMEGADRIEPRLQPPTPAEYGLYGRPTIVHTPRTFAQVRQAVHAPESIDAD- 323

Query: 232 GRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
               + GT+L +++G V  P  VE   S T +  ++           +L     GG    
Sbjct: 324 --APDPGTRLVTVTGDVETPAIVELDSSATLETTLDAV-----SMEGSLKMACVGGVFGG 376

Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351
                   G       L     G     V ++      +      + F    + G+C P 
Sbjct: 377 FTTD---LGVAPTARSLTAADLGTD-GVVELLSDRRCAVATAGERAQFASEANSGRCVPG 432

Query: 352 REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411
           REGT  +  ++  +  G  +    D + E+ + +   + C +G  A  P+   +  F   
Sbjct: 433 REGTKQLTELLRDVYAGAFRS---DGIRELGRVMARSSNCQIGAHAPRPVTTAMDEFESE 489

Query: 412 IEERIDQYHRCN 423
                +   RC 
Sbjct: 490 FRAHAN--GRCP 499


>gi|292494173|ref|YP_003533316.1| putative NADH dehydrogenase I, F subunit [Haloferax volcanii DS2]
 gi|291369052|gb|ADE01282.1| putative NADH dehydrogenase I, F subunit [Haloferax volcanii DS2]
          Length = 479

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/424 (20%), Positives = 156/424 (36%), Gaps = 49/424 (11%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGG--AGFSTG 63
            R+      L     +       + ++D+          + V  +GL GRG   A     
Sbjct: 91  RRVLGPCGWLDPLDPTAYQ----FHSLDR--------DASAVADAGLVGRGRCDAAADDP 138

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
           +  ++     +D    +VVNA++++     DR ++   P ++++G    +  +G   A I
Sbjct: 139 VADAWRRARETDGDPVVVVNANDADDRQRADRTLLAGSPMSVLDGVAAVAEYLGTTEAVI 198

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
           +V       +  L+ A+D       +      G             Y  GE TA LE++E
Sbjct: 199 HVAETDTELQAHLREAIDAAADELPVVPVVVTG----------PDEYRAGEPTAALEAIE 248

Query: 184 G-KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           G  + +PRL+PP PA  GLYG PT ++   + A V   L        G  R+    T+L 
Sbjct: 249 GVDRTEPRLQPPTPAEYGLYGRPTVIHTPRTFARVRLALAD----PEGTDRDAASTTRLL 304

Query: 243 SISGHVNYPCTVEESMS---ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +++G V  P T+E        T    +E           +      GG         +  
Sbjct: 305 TVTGDVAAPATIEVGSDARLSTARNAVELEG--------SFKMACVGGVFGGL---TRTL 353

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
                   L   G G     V +++     +      + F    + G+C P REGT  + 
Sbjct: 354 DVESTAAELTAAGLGTE-GVVELLNDERCAVATAGERARFASEANSGRCVPGREGTVQLT 412

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            ++  + +G     +   + E+ + +   + C LG  A  P+   +  F    E   D  
Sbjct: 413 ELLRAVYRGSF---DRAKIRELGRVMSRSSNCLLGAHAPRPVLTAMDEFESSFEAHAD-- 467

Query: 420 HRCN 423
            RC 
Sbjct: 468 GRCP 471


>gi|296126170|ref|YP_003633422.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Brachyspira murdochii DSM 12563]
 gi|296017986|gb|ADG71223.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Brachyspira murdochii DSM 12563]
          Length = 386

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 130/340 (38%), Gaps = 30/340 (8%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           ++VNA   +    KDR ++++ PH +++G +  +  +      I ++  +  E++ L  A
Sbjct: 68  IIVNAASFDYLVFKDRFLIKNNPHLILDGALYLAKILNIKIINIVLKDYYSEEKKILIKA 127

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           + E   +G         YD+ I ++     Y    E     S E KK             
Sbjct: 128 IAEAEDAG-------FAYDIKINIYDEQTYYSENHERITPLSFENKK------------- 167

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
                   + ++E+I  +  +   G   +  +G   N+GT + S+SG +      E  M 
Sbjct: 168 -------YIFDLETITQITYLAHIGEFSFKNYGAYENKGTYILSMSGDIINTNIYEFEMY 220

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
                +I + CG I+    ++  V   G   P +     +   +DY+        +G   
Sbjct: 221 TPIKNII-RACGTIKDY--SIKCVFTNGFLNPPIDFISFQNMTLDYECFNSFNMNIGNGG 277

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +  +     +++ I ++  F K  SCG+C PC  G       + +++ G +   +   L 
Sbjct: 278 ICFIREDRCMVRVILKIVQFAKSVSCGKCMPCHYGFDLCEYYINKMLLGNSDNEDYTNLK 337

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           E  + I   +IC      +  I   I  FR      I+  
Sbjct: 338 EAIEMINTGSICLYIKKLSHCILSSIDMFRDEFLYLIENK 377


>gi|284167343|ref|YP_003405621.1| NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
           protein [Haloterrigena turkmenica DSM 5511]
 gi|284016998|gb|ADB62948.1| NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
           protein [Haloterrigena turkmenica DSM 5511]
          Length = 495

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 164/420 (39%), Gaps = 48/420 (11%)

Query: 6   DRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMK 65
            R+       +  S++D  + G +           + ++N   +   RG         + 
Sbjct: 112 RRVLGACGWRRPTSVADHKAAGGFAP------SDAETVLNVGSSLNGRGWEDLCQDDSLA 165

Query: 66  WSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYV 125
            ++     +D    +VVN      G+  D  ++   P  +++G  + +  + A    +Y 
Sbjct: 166 ETWRTARATDGDPVVVVNGH----GSPADTLLLSSAPFEVLDGASVLANTVAADRIVVYA 221

Query: 126 RGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
             E     ++  +AVD  Y                + V  G   Y   E T  +E++EG 
Sbjct: 222 SSEDDTAVKTASSAVDT-YPDPAAP----------MEVVTGPKEYRAAEPTMAIEAIEGN 270

Query: 186 -KGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
            + + RL+PP P  +GL G PT V+   ++A +   LR G              T++ ++
Sbjct: 271 HRLEARLRPPGPERLGLDGRPTLVHTPRTLAHLAVGLREGIEEQ----------TRVMTV 320

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
            G V+   TVE S +    EL+            +  A   GG         +     + 
Sbjct: 321 RGDVDAVATVELSETRKLSELVNTVGVDG-----SFKAACVGGRFGGI---TRDLDVEIG 372

Query: 305 YDGLKEMGSGLGTAAVI-VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
            + L      LGT  ++ V+  +  +++ + + + F   E+CG+C PCREGT  +  ++ 
Sbjct: 373 LEALDNAD--LGTDGIVDVLSDAQCLVEFVGQRASFAAEENCGRCVPCREGTAQLTLLLR 430

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            +  G    + ID   E+ + +   +ICA G+ A  P +  I+ F    E   +   RC 
Sbjct: 431 NVYDGDFDAQAID---ELGRVMASSSICAFGERAGRPARTAIEAFTSEFEAHAE--GRCP 485


>gi|256396547|ref|YP_003118111.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Catenulispora acidiphila DSM 44928]
 gi|256362773|gb|ACU76270.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Catenulispora acidiphila DSM 44928]
          Length = 418

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 110/404 (27%), Positives = 165/404 (40%), Gaps = 39/404 (9%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
                 G + ++        D ++N +KA+GLRGRGGAGF    K   +    S     +
Sbjct: 26  DAYWHAGGYRDL------SPDLLVNRIKAAGLRGRGGAGFPAAAKLLAVRAAGS--VPVV 77

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           V N  E EPG+ KDR +MR  PH +++G + A+    A   ++YV  +     ES++ A+
Sbjct: 78  VANGGEGEPGSVKDRWLMRARPHLVLDGMLRAADITRAARCYVYVADD--EAAESMRRAL 135

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
            E                V   +   A  Y+ GEETA++  + G    P  KPP P   G
Sbjct: 136 AEREPY------------VPTQIVRVAHTYVAGEETAVVRRINGGPALPTAKPPRPFESG 183

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           + G PT V NVE++A +  +            R     + L ++SG    P  VE  +  
Sbjct: 184 VDGVPTLVANVETLARIALLAA----------RPQTPDSLLLTVSGPGLEPELVEAPVGT 233

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
           +   L  +       G      V+ GG     L    +R  +          S LG  AV
Sbjct: 234 SLQALAYRADRLGTPG------VLMGGMFGGILDPRGLRTELEAAALTAAG-SALGCGAV 286

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
             +      +        F   ES  QC  C  GT  + R M   V G A+  ++  L +
Sbjct: 287 HFLAPGECPVALAAEGLAFLADESSRQCGVCVTGTAALARTMASAVHGTAEPDDLARLSK 346

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            S+++  R  C L DAAA     L+++F PL E  I+    C  
Sbjct: 347 WSQSLRRRGACGLLDAAANLAASLLRSFGPLTEAHIEGRSPCCL 390


>gi|225620388|ref|YP_002721645.1| NADH dehydrogenase [Brachyspira hyodysenteriae WA1]
 gi|225215207|gb|ACN83941.1| DH dehydrogenase [Brachyspira hyodysenteriae WA1]
          Length = 387

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 136/343 (39%), Gaps = 29/343 (8%)

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
             ++++NA   +    KD+ ++R+ PH +++G V  +  +      I ++  ++ ER+ +
Sbjct: 65  EDFILINAASFDYLVFKDKFLLRNNPHLILDGSVFIAKILNIKRIDIVLKDYYLEERDII 124

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
             ++ E   +  +       YD++I ++     Y               K   R+ P F 
Sbjct: 125 LKSIVEAEDANFV-------YDIEINIYDEYAYY--------------NKYNIRITPSFL 163

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
            N         + ++E+I+ +  +   G   +  +G    +G+ + SI+G +  P   E 
Sbjct: 164 ENK------KYIFDLETISQIAYLAHIGGFTFKDYGNGEYKGSNILSITGDIINPNLYEF 217

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            M      +++   G ++     +  V   G   P +     +   +DY+    +   +G
Sbjct: 218 EMHTPLRNIVKAAGGTVKEY--TIKCVFTNGFLNPPIDFETFQKMTLDYECFDSLNMKIG 275

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
              +  +     II+ + ++  F K  SCG+C+PC  G       + R++ G +   +  
Sbjct: 276 NGGICFIQEDRCIIRVVVKIIQFGKSISCGKCSPCHNGFDLCEYYINRMLLGNSNFDDYS 335

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            L E  + I+    C    + A  I   ++ FR      I+  
Sbjct: 336 NLKEAVEMIKIGASCLYIRSLANCILSTMEMFRDEFVYLIENK 378


>gi|323168547|gb|EFZ54227.1| NADH-quinone oxidoreductase subunit F domain protein [Shigella
           sonnei 53G]
 gi|323171965|gb|EFZ57609.1| NADH-quinone oxidoreductase subunit F domain protein [Escherichia
           coli LT-68]
          Length = 196

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 3/178 (1%)

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
              SG V  P   E     T  E++E + GG+R G     A  PGG+    L    +   
Sbjct: 1   MGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAHL-DL 58

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            M+++ + + GS LGTA  + +D   +++  +  L  F+  ESCG CTPCR+G  W +++
Sbjct: 59  PMEFESIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKI 118

Query: 362 MERLVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           +  L +G  Q  +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 119 LRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 176


>gi|312198406|ref|YP_004018467.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Frankia
           sp. EuI1c]
 gi|311229742|gb|ADP82597.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Frankia
           sp. EuI1c]
          Length = 435

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 147/382 (38%), Gaps = 11/382 (2%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPK------VCSDRPHYLVVNADESEPGTCK 93
              +++E++A+GL GRGGAGF    K +               P  +V NA ESEP + K
Sbjct: 49  PAQLVDELRAAGLTGRGGAGFPMWRKLAAALGPDTSGGQAWSGPASVVANAAESEPESAK 108

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D  ++ H PH +++G  + + A+ A  A++YV+     E      A           +  
Sbjct: 109 DAWLLTHAPHLVLDGLALVAEAVSAADAYVYVKPGPGAESAGRALAERRAARVDRRPAEV 168

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
           +L     + V   A A     +    +            P      G       V N E+
Sbjct: 169 RL-APPGVFVAGEASAAAAVVDGGAAKPFPQFVPLAAPAPRGAGRQGRSRRSLVVCNAET 227

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           +A +  + R GA+W+   G  +  GT L ++ G V  P  VE  +  T  E++    G  
Sbjct: 228 LAHLALLARHGAAWFRERGTVDEPGTMLVTVGGAVVSPGLVEVPIGATLAEVVGLAGGAA 287

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                   A+  GG     L A +     +   GL    +  G   V V+      +   
Sbjct: 288 ERPG----AIRVGGYGGSWLSADRTPDVPLSRAGLSAWDAAPGPGLVHVLPARACGLAET 343

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            RL+ +   +S GQC PCR G   +     +L  G           EV++ ++GR  C  
Sbjct: 344 ARLAGYLAAQSAGQCGPCRAGLPELAAAAGQLAGGGLTGSWARQAAEVAELVDGRGACRH 403

Query: 394 GDAAAWPIQGLIKNFRPLIEER 415
            D AA  ++  ++ F   +   
Sbjct: 404 PDGAARLVRSALRVFAADLHAH 425


>gi|302529506|ref|ZP_07281848.1| hypothetical protein SSMG_05888 [Streptomyces sp. AA4]
 gi|302438401|gb|EFL10217.1| hypothetical protein SSMG_05888 [Streptomyces sp. AA4]
          Length = 368

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 91/391 (23%), Positives = 152/391 (38%), Gaps = 50/391 (12%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
            G    +D+      D +I+E+  +G+RGRGGAGF    K   +          +V N  
Sbjct: 16  HGGLPALDR------DALIHEIDVAGIRGRGGAGFPAAAKLRSVA----PGRSIVVANGC 65

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           ES+P + KDR ++   PH +++G  +A+ A+GA  A++ +R        S+ AA+ E   
Sbjct: 66  ESDPFSSKDRALLELAPHLVLDGIQVAAHAVGATEAYLCLR----EGNRSVLAALAERRD 121

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           +  +                    Y+  EETAL+  L     +P  K P P   GL G P
Sbjct: 122 AVPVKV------------VAVPHRYVASEETALVHFLGSGDARPTGKFPRPTERGLRGRP 169

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
           T V NVE++A    + R GA  +          T L +++G V  P  +E         +
Sbjct: 170 TLVQNVETLARFALVARTGADRFV--------PTDLVTVTGAVARPGVMEVPADTPVSAI 221

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           + +  G +        AV+ GG     +P        +        G   G +++ ++  
Sbjct: 222 LARAGGSV-----TAQAVLIGGYGGTWMPRSLADPLPL--------GREPGLSSLHLLPD 268

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
           S   ++    +      ES  QC PC  G   +      L+ G      +     +   +
Sbjct: 269 SHCGVELTRNILHTLAGESARQCGPCMFGLPAVAADFTDLLSGRDATGRLARRLPL---L 325

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            GR  CA  D A       ++ F   +   +
Sbjct: 326 SGRGACAHPDGAVRLAASALRVFAADVHAHL 356


>gi|284110216|ref|ZP_06386512.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829782|gb|EFC34087.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 193

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 117/195 (60%), Gaps = 4/195 (2%)

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLE 183
           +  EF+  R SL+ A+++    G LG N    G D+D+ +  G G+Y+ GEETA+LES++
Sbjct: 1   MNAEFLDARASLEKALEQARTRGFLGRNVMGSGVDLDLEIFEGHGSYVAGEETAMLESMQ 60

Query: 184 GKKGQPRLKPPF-PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
           G+  QP+ KPPF P   GL+G PT VNNVE+++ VP +LR GA W++  G E + GT LF
Sbjct: 61  GRPAQPKEKPPFYPTEFGLHGKPTLVNNVETLSHVPHLLRNGAEWFTEVGAEKSPGTMLF 120

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           S+SG VN P   E  +      LIE+ CGG       + A+ PGG S   +    +    
Sbjct: 121 SLSGAVNRPGVYELPLGTPLRHLIEE-CGGGVPHGRAIKAMFPGGPSFAMVGPDAL-DLP 178

Query: 303 MDYDGLKEMGSGLGT 317
           MD+D LK+ G+GLG+
Sbjct: 179 MDFDALKKAGTGLGS 193


>gi|300787792|ref|YP_003768083.1| respiratory-chain NADH dehydrogenase-related protein [Amycolatopsis
           mediterranei U32]
 gi|299797306|gb|ADJ47681.1| respiratory-chain NADH dehydrogenase-related protein [Amycolatopsis
           mediterranei U32]
          Length = 376

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 153/386 (39%), Gaps = 45/386 (11%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           + GRD +I  V+A+ LRGRGGAGF T +K        S     +V N  E +P + KD  
Sbjct: 29  DDGRDRLIEAVEAADLRGRGGAGFPTAVKLRAARSKRS----IVVANGCEGDPLSRKDVA 84

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++   PH +++G  +A+ AIGA  A + V  +       + AA+ E              
Sbjct: 85  LLTLSPHLVLDGLQLAAHAIGAAEAVLCVHADSP-ALPGVAAALAEREDRAP-------- 135

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + V      Y+  EETAL+  L     +P  K P PA  G+ G PT V+NVE++A 
Sbjct: 136 ----VRVAQVPRRYVASEETALVRYLTSGDARPLGKRPRPAERGVRGRPTLVSNVETLAQ 191

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           + +++  G + Y     E      L +++G V  P  VE +   +             G 
Sbjct: 192 LASVVLLGPNHYRASRTE------LVTVTGAVRRPGVVEVAAGTSLA----DALAAAGGE 241

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            + + AV+ GG                     +  G   G AAV  +      ++   ++
Sbjct: 242 AEPVQAVLAGGYGGTW--------------TAELGGGVPGIAAVHALPVRACGLEYTAKV 287

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
             F   ES  QC PC  G   +      LV+G      +     +   + GR  CA  D 
Sbjct: 288 LAFLAAESARQCGPCTFGLPSIAADFAELVRGGPAAPRLARRLPL---LTGRGACAHPDG 344

Query: 397 AAWPIQGLIKNFRPLIEERIDQYHRC 422
           AA      ++ F   +        RC
Sbjct: 345 AARLAASALQVFDADVRAH-QAGGRC 369


>gi|297714474|ref|XP_002833671.1| PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1,
           mitochondrial-like, partial [Pongo abelii]
          Length = 155

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 84/136 (61%), Positives = 101/136 (74%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++SRG W    +IL KG DWI+ E+K SGLRGRGGAGF 
Sbjct: 11  LKDEDRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFP 70

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I+RH+PH L+EGC++   A+GA  A
Sbjct: 71  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAA 130

Query: 122 FIYVRGEFIRERESLQ 137
           +IY+RGEF  E  +LQ
Sbjct: 131 YIYIRGEFYNEASNLQ 146


>gi|225405649|ref|ZP_03760838.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme
           DSM 15981]
 gi|225042823|gb|EEG53069.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme
           DSM 15981]
          Length = 218

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A   GG S  C+PA       +DYD L  +GS +G+  +IVMD    ++        F
Sbjct: 12  FKAAQTGGPSGGCIPAEH-FDIPIDYDNLLAIGSMMGSGGLIVMDEDDCMVDIAKFFLEF 70

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAW 399
              ESCG+CT CR GT  M+ ++E++ KG AQ  ++D L E+   ++  ++C LG  A  
Sbjct: 71  TVEESCGKCTACRIGTKRMLEILEKITKGTAQMEDLDKLEELCHYVKANSLCGLGQTAPN 130

Query: 400 PIQGLIKNFRPLIEERIDQYHRCN 423
           P+   +  FR   E  I +  RC 
Sbjct: 131 PVLSTLHFFRDEYEAHIKE-KRCP 153


>gi|256371785|ref|YP_003109609.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008369|gb|ACU53936.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 408

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 96/348 (27%), Positives = 147/348 (42%), Gaps = 31/348 (8%)

Query: 52  LRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVI 111
           + GRGGAGF    K + +       P  +V N  ESEPG  KD+ ++ H PH +++G  +
Sbjct: 57  IVGRGGAGFPLARKLAAVASQRG--PRVVVANGAESEPGARKDKALLTHAPHLVLDGLGL 114

Query: 112 ASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYI 171
           A+  + A  A + V  E     + L+ A+ E   +              + V     +Y+
Sbjct: 115 ATRLLEAREAIVAV--EDATAADVLERAIRERSDA--------------VRVALLDRSYL 158

Query: 172 CGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGF 231
            G+ETALL +LEG+   PR +    A  G    PT V NVE++A      R G SW+   
Sbjct: 159 TGQETALLAALEGRPALPRFQLARVAERGYKSRPTLVANVETLAQWALAARFGTSWHQSA 218

Query: 232 GRENN-RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
           G   + R T++ SI+   + P  VE +   T   L++             L     G  +
Sbjct: 219 GTRGHDRSTRIVSIALPGSTPTVVELAPGATVRSLLDAVGVTTGLA----LVGGLFGELI 274

Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
                  M   ++D     +    LG  +V++   +T ++ A   L  +   E  GQC P
Sbjct: 275 SVADERAMARVLVDRADSSDE-LALGAGSVLLAPSATCVVCATSELVGYLSEERAGQCGP 333

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAA 398
           C  G   + R +     G         L  V++ I  R  CAL DAAA
Sbjct: 334 CDRGLPELARALG---AGARPAE----LATVARLIARRGACALPDAAA 374


>gi|258651844|ref|YP_003201000.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nakamurella multipartita DSM 44233]
 gi|258555069|gb|ACV78011.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Nakamurella multipartita DSM 44233]
          Length = 426

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 143/363 (39%), Gaps = 23/363 (6%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH--YLVVNADESEPGTCKDRDIMRHEP 102
             V A+GL+GRGGAGF T  K + +            +V N  E +P   KDR ++   P
Sbjct: 49  AMVDAAGLQGRGGAGFPTARKIAAVAAAVGKTRRPAVVVANCCEGDPTAAKDRVLIDRSP 108

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
           H +I+G V A+ A+ A    + V       R++L  A+ E                V I 
Sbjct: 109 HLVIDGAVAAARAVRADRVVLAVHHGSP-ARQTLAVALTERPDE-----------RVRIE 156

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           V      Y+  E TALL  L+    +P  + P     G+ G PT V+N E+ A +  I R
Sbjct: 157 VVAVPARYLASEATALLRFLDTGDARPAGRLPI-WEKGVEGRPTLVDNAETFAHLALIAR 215

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
            GA W+   G     GT L ++ G V  P  +E     +  +++   C G R        
Sbjct: 216 FGAGWFGAVGHPAEPGTMLLTLGGAVPRPGVIEVPTGASVRDVL--ACAGSRPTG----W 269

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
            + GG +   +   +  G  +    LKE+G   G  ++ V+     +++   R+      
Sbjct: 270 ALIGGLAGRWMNLDRSAGIGLSTPELKEIGMTRGVGSLTVLPPGACLLQETTRIVTHQAQ 329

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
               QC PC  G   +   +  L  G      +  L+     I+GR  C   D       
Sbjct: 330 AGARQCGPCMFGLPAIAADLAALAAGDHDA--LARLHRRLPVIDGRGACGHPDGTVALTA 387

Query: 403 GLI 405
             +
Sbjct: 388 SAL 390


>gi|119718646|ref|YP_925611.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Nocardioides sp. JS614]
 gi|119539307|gb|ABL83924.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Nocardioides sp. JS614]
          Length = 412

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 144/369 (39%), Gaps = 30/369 (8%)

Query: 54  GRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113
           GRGGA F    K   +P   +     ++VN  ESEP + KDR +M   PH +++G +  +
Sbjct: 52  GRGGAAFPVATKLLAVP---TGSRTQVLVNGSESEPASRKDRTLMTLTPHLVLDGALAVA 108

Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICG 173
            A+      I V         SL+ A+DE      +           + +   AG ++ G
Sbjct: 109 RALRTRHVTIAVHD--AAALASLRTALDERARDEPIHE--------RVDLRRTAGRFVSG 158

Query: 174 EETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGR 233
           E  ALL  L+G    P  +   P++ GL G PT  +NVE+ A V  ++  GA+ +   G 
Sbjct: 159 EVRALLRGLDGGPAVPPSRRTLPSDSGLRGAPTFASNVETFAQVALLVSLGATEFGAVGN 218

Query: 234 ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL 293
               GT L ++ G       VE    +  D L+    G           V+ GG     +
Sbjct: 219 PEEPGTTLLTLLGDTRTQGVVEVPTDLPLDALLPGAGGP----------VLVGGYHGRWV 268

Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCRE 353
               + G      GL+  G  L    V  + R    +  +  ++ +   +S GQC PC  
Sbjct: 269 --RDVDGLAAARPGLRAAGLPLNAGVVARLPREVCALAEVTAVTRWLAAQSAGQCGPCLY 326

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           GT  +   +  L+ G A       L  +     GR  CA  D     +   +      +E
Sbjct: 327 GTAALAHDVGELLHGRAAPAVEARLRGLV----GRGACAHPDGTTAFVSTALATLGDELE 382

Query: 414 ERIDQYHRC 422
               Q+  C
Sbjct: 383 LH-RQHGGC 390


>gi|150018599|ref|YP_001310853.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149905064|gb|ABR35897.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 414

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 117/325 (36%), Gaps = 58/325 (17%)

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
           R ++      +I+G  I    +G     IY+   +                         
Sbjct: 45  RYLLEQHISKVIDGIKICQKELGIEKVKIYLSECYSNF---------------------- 82

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                                   LES E +      K  F     ++   T V+N E++
Sbjct: 83  ---------------------KMQLESYEIEVVLVGNKKAF--EKDVFNEVTLVHNAETM 119

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
             +   L            EN    K+ SI+G V      E     +  E+I ++ GG  
Sbjct: 120 YALKNSLE-----------ENYIPKKIISIAGDVKNSGIYEIPFGTSLREIISEYGGGTE 168

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                +  V  GG++       ++      Y  L   G+ L  + + V +    ++  + 
Sbjct: 169 SE-KAIKFVQVGGNTGAVFTEEEL-DTPFLYSNLIGNGTMLEVSKIEVYNVDMCVVNWVT 226

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALG 394
           +  +    E+CG+C  CREG   + ++++   +G  ++ +I+L  ++S+ I+  T+C  G
Sbjct: 227 QKMLDNSKETCGKCVYCREGIYQLYKIIKDATEGKGKESDINLALQLSETIKIGTLCDFG 286

Query: 395 DAAAWPIQGLIKNFRPLIEERIDQY 419
             A+ P+   I  FR   E+ ID+ 
Sbjct: 287 RTASNPLYTAINKFRDEFEKHIDRK 311


>gi|221215864|ref|ZP_03588815.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           multivorans CGD1]
 gi|221164264|gb|EED96759.1| NAD-dependent formate dehydrogenase beta subunit [Burkholderia
           multivorans CGD1]
          Length = 281

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 70/181 (38%), Positives = 101/181 (55%), Gaps = 2/181 (1%)

Query: 169 AYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY 228
           AY+CGEETALLESLEGK+G  R KPP PA  GL+G PT +NNV ++A  P I  RGA++Y
Sbjct: 103 AYVCGEETALLESLEGKRGVVRAKPPLPALAGLFGQPTVINNVITLATAPVIFARGAAFY 162

Query: 229 SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288
             +G   +RGT  F ++G++ Y   VE +  +T  EL+    GG   G     A   GG 
Sbjct: 163 RDYGMGRSRGTLPFQLAGNIRYGGLVELAFGVTLRELLFDFGGGTATGRPA-RAAQVGGP 221

Query: 289 SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348
               LP        +DY+    +G+ +G   +++ D ++++ +       F   ESCG+C
Sbjct: 222 LGTYLP-EHQWDVPLDYEAYTAIGAVVGHGGIVLHDDTSNLAELAEYAMKFCAIESCGKC 280

Query: 349 T 349
           T
Sbjct: 281 T 281


>gi|149436181|ref|XP_001521364.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV1,
           partial [Ornithorhynchus anatinus]
          Length = 149

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/140 (62%), Positives = 105/140 (75%), Gaps = 1/140 (0%)

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
            IPGGSS P +P       +MD+DGL +  +GLGTAAVIVMDRSTDI+KAI RL  FYKH
Sbjct: 1   FIPGGSSTPLIPKSVCETVLMDFDGLVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKH 60

Query: 343 ESCGQCTPC-REGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPI 401
           ESCGQCTPC R G  WM +VM R VKG A+  EID L+E+SK IEG TICALGD AAWP+
Sbjct: 61  ESCGQCTPCVRAGVDWMNKVMWRFVKGEARAAEIDALWEISKQIEGHTICALGDGAAWPV 120

Query: 402 QGLIKNFRPLIEERIDQYHR 421
           QGLI++FRP +E+R  ++  
Sbjct: 121 QGLIRHFRPELEQRFQRFEE 140


>gi|47216621|emb|CAG05422.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 179

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/131 (64%), Positives = 99/131 (75%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  ++ RG W    +IL KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 46  LADEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGVDWILNEIKVSGLRGRGGAGFP 105

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMR++PH L+EGC++A  A+GA  A
Sbjct: 106 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRNDPHKLVEGCLVAGRAMGARAA 165

Query: 122 FIYVRGEFIRE 132
           +IY+RGEF  E
Sbjct: 166 YIYIRGEFYNE 176


>gi|73982781|ref|XP_864339.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 6 [Canis familiaris]
          Length = 137

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 80/124 (64%), Positives = 98/124 (79%)

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +MD+D L +  +GLGTAAVIVMDRSTDI+KAI RL  FYKHESCGQCTPCREG  W
Sbjct: 5   CETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDW 64

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M +VM R V+G A+  EID L+E+SK IEG TICALGD AAWP+QGLI++FRP +EER+ 
Sbjct: 65  MNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQ 124

Query: 418 QYHR 421
           ++ +
Sbjct: 125 RFAQ 128


>gi|302538138|ref|ZP_07290480.1| oxidoreductase [Streptomyces sp. C]
 gi|302447033|gb|EFL18849.1| oxidoreductase [Streptomyces sp. C]
          Length = 369

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/326 (26%), Positives = 137/326 (42%), Gaps = 25/326 (7%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR--PHYLVVNADESEPGTCKDRDIM 98
           D +++      LRGRGGAGF    K   +     +R  P  +VVN  E EP   KD+ ++
Sbjct: 66  DELVDLAADIDLRGRGGAGFPFARKLRAVIGSAREREGPTAVVVNGSEGEPSCLKDKALL 125

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
            H PH +++G ++A+ A+GA    + V    +    S++ AV E    G           
Sbjct: 126 LHAPHLVLDGALLAAAAVGAEEVVVAVTRADVE--RSVRDAVAERGPGGR---------- 173

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             + V      ++ GE TA++  L G    P  +    +  GL G PT ++N E+ A + 
Sbjct: 174 -RVRVARLPERFVTGEGTAMVGGLNGGAALPSGRRVRTSERGLGGVPTLLSNTETYAQLA 232

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
              R GA  Y   G  +  GT L +++G       VE     +   +++           
Sbjct: 233 VAARMGAPDYRAAGLPSEPGTVLLTVAG----QTVVETPTGTSLAYVLDLCG------TR 282

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               V+ GG     L  G  R A +    L   G+ LG  AV+ +   T     + R++ 
Sbjct: 283 TGQGVLVGGYHGRWLDPGAARSADVSRGSLSAFGAVLGAGAVLPLPEDTCPAGEVARVTR 342

Query: 339 FYKHESCGQCTPCREGTGWMMRVMER 364
           +   ES GQC PC  G   +  V+E 
Sbjct: 343 WMAKESAGQCGPCVRGLPGLADVLED 368


>gi|169666458|gb|ACA63844.1| NADH:ubiquinone oxidoreductase NADH-binding 51kD subunit
           [Aphanomyces astaci]
          Length = 172

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/135 (59%), Positives = 98/135 (72%), Gaps = 1/135 (0%)

Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMG-SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
           PGGSSVP +     +   MD+D LK  G SGLGTAAV + D+S D++ AI RLS FY HE
Sbjct: 1   PGGSSVPVMDEATCQNIHMDFDDLKNTGGSGLGTAAVTIFDKSVDMVGAIRRLSHFYTHE 60

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403
           SCGQCTPCREGTGWM  ++ R+  G A+  EI +L E+S+ IEG TICALGDAAAWP+QG
Sbjct: 61  SCGQCTPCREGTGWMESILTRMETGNAELEEIPMLEEISRQIEGHTICALGDAAAWPVQG 120

Query: 404 LIKNFRPLIEERIDQ 418
           LIK F+  + ERI+ 
Sbjct: 121 LIKRFKHKLVERIEN 135


>gi|146189573|emb|CAM91788.1| hypothetical protein [Platynereis dumerilii]
          Length = 137

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/120 (60%), Positives = 86/120 (71%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L DQDRIFTNLYG   +    ++SRG W    +IL K  +WI  E+  SGL+GRGGAGF 
Sbjct: 18  LKDQDRIFTNLYGRHDRRPKGAISRGDWYKTKEILIKDNEWIQQEIVKSGLKGRGGAGFP 77

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           TGMKWSFM K    RP YLVVNADE EPGTCKDR+IMR +PH L+EGC++A  A+GA  A
Sbjct: 78  TGMKWSFMNKPRDGRPRYLVVNADEGEPGTCKDREIMRRDPHKLVEGCLVAGKAMGARAA 137


>gi|289810293|ref|ZP_06540922.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 157

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/136 (45%), Positives = 87/136 (63%), Gaps = 1/136 (0%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D I+++VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 22  QPVWLDEYRSKNGYEGARKALTGLSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDES 81

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
               YL+ NADE EPGT KDR +M   PH L+EG +I++FA+ A+  +I++RGE+I    
Sbjct: 82  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAV 141

Query: 135 SLQAAVDECYASGLLG 150
            L+ A+ E   +G LG
Sbjct: 142 HLRRAIAEATEAGCLG 157


>gi|297194423|ref|ZP_06911821.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152265|gb|EFH31625.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 269

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/263 (24%), Positives = 108/263 (41%), Gaps = 15/263 (5%)

Query: 48  KASGLRGRGGAGFSTGMKWSFMPKVC--SDRPHYLVVNADESEPGTCKDRDIMRHEPHTL 105
           +   L GRGGAGF  G K   + K          +VVN  E EP   KD  ++   PH +
Sbjct: 20  EDISLTGRGGAGFPFGKKLRAVAKSAIRRGIRPVVVVNGSEGEPACRKDTVLLNRAPHLI 79

Query: 106 IEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHH 165
           ++G ++A+ A+GA    + V              +    A    G + + G  +   V  
Sbjct: 80  LDGALLAAEALGARTLVVAVTRNSTE--------ISMRAALAERGLSDRRGQALRARVVR 131

Query: 166 GAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGA 225
                + GE ++++ ++ G    P  +    A  G+ G PT ++N E+ A +    R GA
Sbjct: 132 TPERMVSGEASSVIRAVNGGPALPPGRRVRAAETGVGGAPTLLSNAETFAQLAVAARIGA 191

Query: 226 SWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285
             YS  G ++  GT + +ISG V  P  VE    +    +++               V+ 
Sbjct: 192 RRYSHTGLDSEPGTVMLTISGAVARPMVVEVPTGVPLRYVLQLAGA-----PPQPQGVLT 246

Query: 286 GGSSVPCLPAGQMRGAIMDYDGL 308
           GG     + A  +  A++  + L
Sbjct: 247 GGYHGNWIDAAAVHEAVVSKESL 269


>gi|256962026|ref|ZP_05566197.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           Merz96]
 gi|256952522|gb|EEU69154.1| NAD-dependent formate dehydrogenase, beta [Enterococcus faecalis
           Merz96]
          Length = 175

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/176 (34%), Positives = 97/176 (55%), Gaps = 5/176 (2%)

Query: 1   MLT-DQDRIFTNLYGLQ-GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA 58
           ML  +Q  +   +  +Q    +S+      +D + + +    + I+NE+  + LRGRGGA
Sbjct: 1   MLKRNQPMLLERMGKMQSATDVSEYCKYDGFDGLKRAISLSDEEILNELDIAHLRGRGGA 60

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
            +  G KW  +         Y+V NADE EPGT KD+ ++  +P ++IEG +IA +   A
Sbjct: 61  AYPLGKKWRHLYHAK-GTTKYIVCNADEGEPGTFKDKVLLSEDPLSVIEGMIIAGYLFSA 119

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS--KLGYDVDIIVHHGAGAYIC 172
              +IY+RGE+ R +++ Q A+D    +G LG N     G++ DI +  GAGAYIC
Sbjct: 120 KAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYDITIISGAGAYIC 175


>gi|67043787|gb|AAY63992.1| NADH dehydrogenase flavoprotein 1-like protein [Lysiphlebus
           testaceipes]
          Length = 121

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/116 (59%), Positives = 89/116 (76%)

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
           D L  + S  GTAA+IVM++ TD+IKAI RL  FYKHESCGQCTPCREG  WM ++M R 
Sbjct: 1   DDLVRVQSSFGTAALIVMNKQTDVIKAIQRLISFYKHESCGQCTPCREGISWMHKIMSRF 60

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           V+G A+  EID+L+E++K IE  TICAL D AAWP+QGL+++FRP IEER+  + +
Sbjct: 61  VEGNAEVHEIDMLWELTKQIELHTICALADGAAWPVQGLVRHFRPAIEERMINFKQ 116


>gi|263364|gb|AAB24883.1| mitochondrial NADH:ubiquinone oxidoreductase 51 kda subunit [Homo
           sapiens]
          Length = 130

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/96 (67%), Positives = 71/96 (73%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  S+SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           TG+KWSFM K    RP YLVVNADE EPGTCKDR+I
Sbjct: 95  TGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI 130


>gi|218260395|ref|ZP_03475734.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224549|gb|EEC97199.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii
           DSM 18315]
          Length = 184

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DYD L   GS +G+  +IVMD    ++        F   ESCG+C PCR G   +  +++
Sbjct: 1   DYDNLLAAGSMMGSGGMIVMDEDDCMVAMAKFYLDFTVEESCGKCAPCRIGNKRLHEMLQ 60

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           ++  G     +++ L  ++  I+   +C LG  +  P+   + NF       + +  RC 
Sbjct: 61  KITSGNGTIEDLNRLRNLAGVIKDTALCGLGQTSPNPVLSTMDNFYDEYLAHVKE-KRCP 119


>gi|167830055|ref|ZP_02461526.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei 9]
          Length = 251

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 99  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 158

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 159 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATV 217

Query: 121 AFIYVRGEFIRERES 135
             IYVR E+     +
Sbjct: 218 GHIYVRSEYPHAIAA 232


>gi|213400751|gb|ACJ47024.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Ctenocephalides canis]
          Length = 124

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/124 (62%), Positives = 97/124 (78%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI A  A+IY+RGEF  E   L+AA++E Y  GL+G N+ K GY++D+ +H GA
Sbjct: 1   ILLAGKAISASAAYIYIRGEFYNEYLILKAALEEAYQKGLIGQNACKSGYNLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IAVVP ILRRG  W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAVVPDILRRGGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|213400747|gb|ACJ47022.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Zootermopsis angusticollis]
 gi|213400749|gb|ACJ47023.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Zootermopsis nevadensis]
          Length = 124

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 96/124 (77%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI A  A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GA
Sbjct: 1   ILLAGRAISASVAYIYIRGEFYNEYLVLKKALEEAYKEGLVGKNACKSGYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP ILRRG  W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILRRGGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|273160844|gb|ACZ97596.1| mitochondrial complex I subunit [Psalteriomonas lanterna]
          Length = 147

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/146 (53%), Positives = 99/146 (67%)

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
           CGG+RGGWDNLLAVIPGGSS   LP       +MD+D L  + S  GTA+++VMD+STDI
Sbjct: 1   CGGVRGGWDNLLAVIPGGSSTAPLPKKVCDSVLMDFDSLAAVNSSFGTASILVMDKSTDI 60

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           +KA  R + FYK ESCGQCTPCREG  W+  +M+   KG  +  +ID L +  ++I GR+
Sbjct: 61  VKAFARQAHFYKEESCGQCTPCREGMHWITDMMDSFAKGEGKLEDIDFLMDTCQHISGRS 120

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEER 415
           ICAL D  A  I GLI N RP +E +
Sbjct: 121 ICALADGGAQGIIGLINNSRPFLEAK 146


>gi|213400729|gb|ACJ47013.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia
           longicornis]
          Length = 124

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/124 (60%), Positives = 95/124 (76%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI A  A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GA
Sbjct: 1   ILLAGKAISASVAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|167720687|ref|ZP_02403923.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           DM98]
          Length = 210

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 2/133 (1%)

Query: 2   LTDQDRIFTNLYGL-QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           L  Q R+     G+    S+ D ++ G  + +   L          +  SGLRGRGGA F
Sbjct: 79  LKRQQRLTFARIGITDPLSIDDYVAHGGLEGLRNALALDGAAACETLVESGLRGRGGAAF 138

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
             G+KW  + +  +    Y+V NADE + GT  DR +M  +P+ LIEG +IA  A GA  
Sbjct: 139 PAGVKWRTVREAAA-AQKYVVCNADEGDSGTFSDRLVMESDPYCLIEGMIIAGIATGATI 197

Query: 121 AFIYVRGEFIRER 133
             IYVR E+    
Sbjct: 198 GHIYVRSEYPHAI 210


>gi|213400745|gb|ACJ47021.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Coptotermes acinaciformis]
          Length = 124

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 95/124 (76%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI A  A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GA
Sbjct: 1   ILLAGRAICASVAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP ILRRG  W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILRRGGEW 120

Query: 228 YSGF 231
           +   
Sbjct: 121 FMSL 124


>gi|213400739|gb|ACJ47018.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Litomosoides sigmodontis]
          Length = 124

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/124 (60%), Positives = 95/124 (76%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI    A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GA
Sbjct: 1   ILLAGRAISTSVAYIYIRGEFYNEYLVLKQALEEAYKEGLIGKNACKSGYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPANVGL+GCPT +NNVE+IA+VP ILRRG  W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRMKPPFPANVGLFGCPTMINNVETIAMVPDILRRGGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|213400743|gb|ACJ47020.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Nasutitermes nigriceps]
          Length = 124

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/124 (61%), Positives = 97/124 (78%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI A  A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GA
Sbjct: 1   ILLAGRAICASIAYIYIRGEFYNEYLVLKKALEEAYKEGLIGKNACKSGYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPA+VGL+GCPTT+NNVE+IA+VP ILRRG  W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRMKPPFPASVGLFGCPTTINNVETIAMVPDILRRGGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|213400735|gb|ACJ47016.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 124

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/124 (58%), Positives = 93/124 (75%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI A  A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GA
Sbjct: 1   ILLAGRAINASAAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA  ES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W
Sbjct: 61  GAYICGEETAQFESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAIVPDILNRGGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|213400731|gb|ACJ47014.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Nasonia
           vitripennis]
          Length = 124

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/124 (59%), Positives = 94/124 (75%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI A  A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GA
Sbjct: 1   ILLAGKAISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL RG  W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIAMVPDILNRGGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|213400753|gb|ACJ47025.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Dipetalonema gracile]
          Length = 124

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/124 (57%), Positives = 94/124 (75%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI A  A+IY+RGEF  E   L+ ++ E Y  GL+G N+ K  Y++D+ +H GA
Sbjct: 1   ILLAGKAINASTAYIYIRGEFYNEYLVLKKSLKEAYKEGLIGKNACKSDYNLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGK+G PR+KPPFPA VGL+GCPTT+NNVE+IA++P ILRRG  W
Sbjct: 61  GAYICGEETAQLESIEGKRGFPRIKPPFPAEVGLFGCPTTINNVETIAMIPDILRRGGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|213400733|gb|ACJ47015.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Armadillidium vulgare]
          Length = 124

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/124 (58%), Positives = 94/124 (75%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  A+ A  A+IY+RGEF +E   L+ A++E Y   L+G N+ K GYD+D+ +H GA
Sbjct: 1   ILLAGRAVSASVAYIYIRGEFYKEYLVLKKALEEAYEENLIGKNACKSGYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+IA+VP IL  G  W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRVKPPFPAGVGLFGCPTTINNVETIAMVPDILNHGGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|213400737|gb|ACJ47017.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Tribolium
           confusum]
          Length = 124

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/124 (58%), Positives = 93/124 (75%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI A  A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GA
Sbjct: 1   ILLAGRAISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPA VGL+G PTT+NNVE+IA+VP IL RG  W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRMKPPFPAVVGLFGYPTTINNVETIAMVPDILNRGGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|213400741|gb|ACJ47019.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of Folsomia
           candida]
          Length = 124

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/123 (60%), Positives = 94/123 (76%), Gaps = 1/123 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            V+A  AI A  A+IY+RGEF  E   L+ A++E Y  GL+G N+ K GYD+D+ +H GA
Sbjct: 1   IVLAGKAINASAAYIYIRGEFYNEYLILKEALEEAYKEGLIGKNACKSGYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPA VGL+GCPTT+NNVE+I +VP IL RG  W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRMKPPFPAGVGLFGCPTTINNVETIPMVPDILTRGGEW 120

Query: 228 YSG 230
           ++ 
Sbjct: 121 FAS 123


>gi|213400755|gb|ACJ47026.1| NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Cordylochernes scorpioides]
          Length = 124

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/124 (58%), Positives = 92/124 (74%), Gaps = 1/124 (0%)

Query: 109 CVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGA 167
            ++A  AI A  A+IY+RGEF  E   L+ A+ E Y  GL+G N+ K  YD+D+ +H GA
Sbjct: 1   ILLAGRAINASVAYIYIRGEFYNEYLVLKKALKEAYKGGLIGKNACKSDYDLDVFIHRGA 60

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
           GAYICGEETA LES+EGKKG PR+KPPFPA +GL+GCPTT+NNVE+IA+VP IL R   W
Sbjct: 61  GAYICGEETAQLESIEGKKGFPRMKPPFPAGIGLFGCPTTINNVETIAMVPDILYRKGEW 120

Query: 228 YSGF 231
           ++  
Sbjct: 121 FASL 124


>gi|237800540|ref|ZP_04589001.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023400|gb|EGI03457.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 148

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 1/119 (0%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG+KW  MPK  S
Sbjct: 30  EPVWLDEYQTKDGYAAARKALTQQAPDDIVQSVKDSGLKGRGGAGFPTGVKWGLMPKDES 89

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
               YL+ NADE EP T KDR +M   PH LIEG +I++ A+ A+  +I++RGE++   
Sbjct: 90  MNIRYLLCNADEMEPNTWKDRMLMEQLPHLLIEGMLISARALKAYRGYIFLRGEYVTAA 148


>gi|268323919|emb|CBH37507.1| putative Fe-only hydrogenase, N-terminus [uncultured archaeon]
          Length = 117

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 67/103 (65%), Gaps = 1/103 (0%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
            ++  +  G + +++K L+     II+EVK SGL GRGGA F TG+KW F  K  S+   
Sbjct: 16  DIAIYIKTGGYSSLEKALQMQPHDIIDEVKKSGLVGRGGAAFPTGLKWEFTRK-ESEELK 74

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           Y+V NADE EPGT KDR I+++ PH L+E  +IA +AIGA  A
Sbjct: 75  YVVCNADEGEPGTFKDRVILKNNPHLLVESMIIAGYAIGAKEA 117


>gi|237859138|gb|ACR23742.1| RnfC [Acetobacterium woodii DSM 1030]
          Length = 443

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 114/338 (33%), Gaps = 60/338 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   D I   V  +G+ G GGA F T +K +  P    D    +V+N  E EP    D  
Sbjct: 121 DMDADAIKKMVLNAGIVGLGGATFPTHVKLAIPPDKKVDC---VVLNGAECEPYLTADHH 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  +   ++ G  +A  ++G    FI V        E+L  A+               G
Sbjct: 178 LMTSQAEKVVMGLKLAMKSVGVEKGFIGVEDNKTDAIEALVKAI---------------G 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  + V+     Y  G E  L+ ++ G++         PA+ G+      V NV + A 
Sbjct: 223 NDSRLEVYSLHTKYPQGAEKQLIAAITGREV---PSGALPADAGV-----VVMNVGTAAQ 274

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   +  G   Y  +         L      +  P T+E  + + F  +I   CGG    
Sbjct: 275 IAESMITGLPLYKRY---------LTCTGDAIKNPQTIEIRIGVPFQSVI-DQCGGFSSE 324

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 VI GG  +                 + ++    GT+ ++ + + +         
Sbjct: 325 PGK---VISGGPMMGV------------TQFVTDIPVMKGTSGILCLTKES--------- 360

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +      +C  C  C       ++ +           +
Sbjct: 361 AKIATPSNCIHCGKCVGVCPIHLQPLNIAEYSQRNMWD 398


>gi|281422077|ref|ZP_06253076.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella
           copri DSM 18205]
 gi|281403866|gb|EFB34546.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella
           copri DSM 18205]
          Length = 450

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 123/367 (33%), Gaps = 64/367 (17%)

Query: 15  LQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           ++G    +S+ R    + ++   E   + I+N +K +GL G GGAGF T +K    P   
Sbjct: 101 VEGDEWEESIDRSDKLETLEAHAELTPEEIVNRIKVAGLTGMGGAGFPTFIKLCPPPGAK 160

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           ++    +++N  E EP    D  +M      ++ G  +   A      +I +        
Sbjct: 161 AEC---VIINGVECEPYITADYRLMMEHADEILVGLNLLMKAAQVEKGYIGIEDNKPAAI 217

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           +  +                K   D  I +   A  Y  G E  L++++   + Q    P
Sbjct: 218 KLFEE---------------KTANDARIEIVPLAKKYPQGGEKQLVDAVI--RRQVPAPP 260

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPC 252
             P NVG       V NV +   V          Y    +      +  +++G  V  P 
Sbjct: 261 AIPVNVG-----AIVQNVGTAFAV----------YQAVMKNKPLFERYTTVTGKQVKNPG 305

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
                M   F ++IE   G   G    L      G +V  L         +         
Sbjct: 306 NFLVRMGTPFSQMIENCGGLPEGDNKVLAGGPMMGKAVISL------DVPVTK------- 352

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
              GT ++ V+  +    K           + C +C  C +     +     L+  ++  
Sbjct: 353 ---GTNSITVLTDADAHRKKA---------QPCIRCAKCVDACPMGLEPY--LLATLSVV 398

Query: 373 REIDLLY 379
           ++ + L 
Sbjct: 399 KDYERLE 405


>gi|46202100|ref|ZP_00053780.2| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
           subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 212

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 13/176 (7%)

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
            SISG    P   E    +   +++           D     I G S +   P     G 
Sbjct: 1   MSISGDCERPGIYEYPYGVKVSQVLADCGA-----RDTQACQIAGASGLAIAPNE--FGR 53

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRV 361
            + ++ +   GS +      + D + D+ +     + F+ HESCG CTPCR GT  +   
Sbjct: 54  RIAFEDIPTGGSFM------IFDNTRDMFQVARNFAHFFVHESCGFCTPCRVGTTLLANA 107

Query: 362 MERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M+++ +G   + +I  ++ V + ++  + C LG  A   +   ++ FRP  E R++
Sbjct: 108 MDKIDEGHGGEYDISDIWRVIRTLKTASHCGLGQTAGNAVADTLQKFRPSYELRLN 163


>gi|160942347|ref|ZP_02089655.1| hypothetical protein CLOBOL_07232 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434711|gb|EDP12478.1| hypothetical protein CLOBOL_07232 [Clostridium bolteae ATCC
           BAA-613]
          Length = 450

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 136/365 (37%), Gaps = 66/365 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++ ++K +G+ G GGAGF T +K +           YL++NA E EP    DR +M H+ 
Sbjct: 3   LLEQIKEAGIVGCGGAGFPTHVKLNCT-------VEYLIINAAECEPLLRTDRFLMLHKA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++    +    + A   +I ++  +  E  +L+AA+ E ++               + 
Sbjct: 56  REIVTAAGMIGDMVQAGKRYIVLKETYSEEIAALEAAITELHS--------------PVK 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           ++     Y  G+E  ++  + G+   P      P +VG       V+N+ ++  +    +
Sbjct: 102 LYKMKNFYPAGDEQIMVCDVTGRTVPPSG---IPLDVG-----AVVSNLATVYSIYNASQ 153

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                            K  +++G VN PC V   +  +F E +    G     +     
Sbjct: 154 -----------GQPFTEKYLTVTGAVNSPCIVRAPLGTSFAECLLLAGGSSLSSFH---- 198

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII-KAIWRLSVFYK 341
           VI GG          M G     +    +     T+  I++   T ++ K    +SV  K
Sbjct: 199 VIAGGP---------MMGKCYRKEEAAGLTVTKTTSGYIIVADDTPLVEKHNIPISVSLK 249

Query: 342 HE--SCGQCTPCREGTGWM--------MRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
                C QC+ C +               +M +L    + +  ++   E  +     + C
Sbjct: 250 RAKMCCIQCSYCTQMCPRYLTGHPLKPHMIMRKLAYAQSPEEVLE--DEHVRQAMICSEC 307

Query: 392 ALGDA 396
            L + 
Sbjct: 308 GLCET 312


>gi|225164245|ref|ZP_03726518.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
 gi|224801150|gb|EEG19473.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
          Length = 128

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/110 (46%), Positives = 72/110 (65%)

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L   GS  G+  VIVMD S ++++A+  ++ FY HESCGQCTPCREG+ WM ++ 
Sbjct: 1   MDFDTLAACGSMGGSGGVIVMDDSVNMVEALANINAFYSHESCGQCTPCREGSLWMKKIT 60

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            R+V G A+  +  LL  V+  I GRTICA+G+A +WP Q  ++ F    
Sbjct: 61  ARMVHGTARAEDAALLKGVADQIPGRTICAMGEACSWPTQSFLQKFGDEF 110


>gi|167946814|ref|ZP_02533888.1| NADH dehydrogenase (ubiquinone), F subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 109

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
             NL   +   L    SRG ++ + KIL++    + +I EVK SGLRGRGGAGF TG+KW
Sbjct: 7   LRNLDQERPWLLEQYQSRGGYEVLKKILKEKTPPEQLIEEVKQSGLRGRGGAGFPTGLKW 66

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           SF+ +       Y+V N+DE EPGT KDRDI+R+ PH LIEG 
Sbjct: 67  SFITRNAPG-QKYVVCNSDEGEPGTFKDRDILRYNPHQLIEGM 108


>gi|310828230|ref|YP_003960587.1| RnfC [Eubacterium limosum KIST612]
 gi|308739964|gb|ADO37624.1| RnfC [Eubacterium limosum KIST612]
          Length = 446

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/318 (20%), Positives = 113/318 (35%), Gaps = 62/318 (19%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
              II+ ++ +G+ G GGA F T +K S  P    D    +++N  E EP    D  +M 
Sbjct: 126 PKQIIDIIRDAGIVGMGGATFPTHVKLSIPPDKTVDS---VILNGAECEPYLTADHHLML 182

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
             P  +++G  IA  A+G    +I V        E L+ A+ E                 
Sbjct: 183 ARPKRIVQGLRIAMRAVGVDKGYIGVESNKPNAIEKLRKAITE---------------KD 227

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I V      Y  G E  L++++  ++         PA+ G+      V NV +   +  
Sbjct: 228 NIEVVVLETKYPQGAEKQLIKAVTDREV---PSGGLPADAGV-----VVLNVGTACQIAI 279

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
               G   +           +L + +G+ V    T+E  +   + E++++  G       
Sbjct: 280 TFETGLPLHK----------RLLTCTGNAVKNARTMEVKVGTPYQEVVDQCGG----FAK 325

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               VI GG          M G  +    +       GT+ ++       + K    +  
Sbjct: 326 KPYKVISGGP---------MMGVTLFSTDVP---VMKGTSGIL------CLTKGAAYIPE 367

Query: 339 FYKHESCGQCTPCREGTG 356
                +C +C  C E   
Sbjct: 368 ---PSNCIRCGKCAEACP 382


>gi|296082757|emb|CBI21762.3| unnamed protein product [Vitis vinifera]
          Length = 350

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/90 (67%), Positives = 68/90 (75%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYGL    L  +M RG W     I+ KG DWI+NE+K SGLRGRGGAGF 
Sbjct: 177 LKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDIVLKGSDWIVNEMKKSGLRGRGGAGFP 236

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +G+KWSFMPKV   RP YLVVNADESEPGT
Sbjct: 237 SGLKWSFMPKVSDGRPSYLVVNADESEPGT 266


>gi|110589186|gb|ABG77102.1| NADH dehydrogenase I ubiquinone reductase; F subunit 51 kDa
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 115

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/103 (49%), Positives = 66/103 (64%), Gaps = 3/103 (2%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVKASGLRGRGGAGFSTGMKW 66
             NL   +   L    SRG ++ + KIL++    + +I EVK SGLRGRGGAGF TG+KW
Sbjct: 13  LRNLDQERPWLLEQYQSRGGYEVLKKILKEKTPPEQLIEEVKQSGLRGRGGAGFPTGLKW 72

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGC 109
           SF+ +       Y+V N+DE EPGT KDRDI+R+ PH LIEG 
Sbjct: 73  SFITRNAPG-QKYVVCNSDEGEPGTFKDRDILRYNPHQLIEGM 114


>gi|295091667|emb|CBK77774.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Clostridium
           cf. saccharolyticum K10]
          Length = 479

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 122/318 (38%), Gaps = 56/318 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++ +++++G+ G GGAGF    K +        R  YL+VNA E EP    DR +M H+ 
Sbjct: 3   LLEQIESAGIVGCGGAGFPAHKKLNC-------RVEYLIVNAAECEPLLRTDRWLMIHKA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++    +A     A   +I ++  +  E  +L AA++E             GY V + 
Sbjct: 56  KEIVTAAALAGSMTEASHIYIALKETYREEAAALTAAIEE------------TGYPVKLF 103

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
                  Y  G+E  ++  + G+   P      P +VG       + N  ++  V    +
Sbjct: 104 PMRN--FYPAGDEQIMVCDVTGRTVPPSG---IPLDVG-----CVIANTATMYAVFEASQ 153

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                            K  +++G VN PC V   +  +F + +    G           
Sbjct: 154 -----------GKPLTRKYLTVTGAVNEPCIVRAPLGSSFSDCLRLAGG----------- 191

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AIWRLSVF 339
              G S    L  G M G +   +  + +     T+ +IV+   T +I+   A   LS+ 
Sbjct: 192 --TGLSRYYVLAGGPMMGKLYSMEEAESLTVTKTTSGLIVLPEDTPLIRRKTAPVSLSLK 249

Query: 340 YKHESCGQCTPCREGTGW 357
               SC QC+ C +    
Sbjct: 250 LAKTSCIQCSYCTQMCPR 267


>gi|227484615|ref|ZP_03914931.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227237335|gb|EEI87350.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 451

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 140/382 (36%), Gaps = 66/382 (17%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  V  +     + I+ +VK +G+ G GGA F   +K+S      +     ++VN  E E
Sbjct: 121 YTEVKNV-TLSPEEIVAKVKEAGIVGMGGAAFPAHVKYS-----PNKPIDTVIVNGAECE 174

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D  IM++ P  +I+G +    A+ A    I +        +S+  A+ E   +  
Sbjct: 175 PYITCDDYIMKNYPLHIIKGLIQVLKAVNAKEGVIAIENNKPAAYKSMTEALAEFAKTN- 233

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                   +D  I V      Y  G+E  L+ ++  K+  P      P +VG       V
Sbjct: 234 -------KFDGTIKVVSLETKYPQGDEKRLINAIL-KREVP--SGGLPMDVG-----AVV 278

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NV ++  +   L  G   Y           ++ +++G  V  P  +   +  +F++LIE
Sbjct: 279 SNVSTVNAIYEALYMGKPLY----------ERILTVTGRTVKNPQNMRVRIGTSFNDLIE 328

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
           +  G      + +  VI GG       A       ++            T  ++V D   
Sbjct: 329 EAGGA-----EEIAKVINGGPMCGI--AQPDLNKPVEKA----------TNCILVFDSKD 371

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMM---RVMERLVKGIAQKREIDLLYEVSKN 384
             I+             C +C  C       +    + +  + G  +K + +   +    
Sbjct: 372 AFIE---------DPTPCIRCGRCVSVCPVFLLPNYIHKHALDGRFEKADEEGALD---C 419

Query: 385 IEGRTICALGDAAAWPIQGLIK 406
           IE  + C+    A  P+   IK
Sbjct: 420 IECGS-CSFVCPARRPLVEAIK 440


>gi|255994383|ref|ZP_05427518.1| Na(+)-translocating NADH-quinone reductase, A subunit [Eubacterium
           saphenum ATCC 49989]
 gi|255993096|gb|EEU03185.1| Na(+)-translocating NADH-quinone reductase, A subunit [Eubacterium
           saphenum ATCC 49989]
          Length = 448

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 130/379 (34%), Gaps = 70/379 (18%)

Query: 9   FTNLYGLQGKSLSDSMSRGHWDN----VDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64
             N  G+  +++   +           V K   K  +  I  V+ASG  G GGA F T +
Sbjct: 97  VRNAMGMMDEAVE--IKTDGLQEISEEVKKPEVKDFESFIAAVRASGAVGLGGAAFPTHI 154

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           K  F PK   D    L++NA E EP    D  +M  +P  +++G  I    +G   A I 
Sbjct: 155 K--FNPKNI-DEVDTLIINAAECEPFITADHRLMLEDPVDILDGIEITMRYMGIKRAIIG 211

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG 184
           +        E L + + +    G             + +      Y  G E  L     G
Sbjct: 212 IESNKPNAIEVLNSEISKRKLDG-------------VSIKVLQSRYPQGAERVLAYEATG 258

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSI 244
           +K         PA++GL      + NV +IA +   +R G    +          K  ++
Sbjct: 259 RKLDA---GVLPADIGL-----IITNVATIAFIGQYMRNGIPLIN----------KRLTV 300

Query: 245 SGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
            G  VN P  V  ++     +LI   CGG +        ++ GG          M G  +
Sbjct: 301 DGDAVNTPQNVIVAIGTPIKDLI-AACGGYKKHP---KKILMGGP---------MMGRAI 347

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES-CGQCTPCREGTGWMMRVM 362
             D L          A++                 F   E+ C  C  C +       ++
Sbjct: 348 FSDELP---IIKNNNAILAFADED----------KFTMPETPCISCGKCHQACP--FDLL 392

Query: 363 ERLVKGIAQKREIDLLYEV 381
                   + +++D L ++
Sbjct: 393 PAAYYKAYKSQDVDTLNKL 411


>gi|325523852|gb|EGD02080.1| NADH dehydrogenase (quinone) [Burkholderia sp. TJI49]
          Length = 155

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 2/155 (1%)

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           I  RGA++Y  +G   +RGT  F ++G++ +   VE +  +T  EL+ +  GG   G   
Sbjct: 1   IFARGAAFYRDYGMGRSRGTLPFQLAGNIRHGGLVELAFGVTLRELLFEFGGGTASGRPA 60

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
             A   GG     LP        +DY+    +G+ +G   +++ D ++++         F
Sbjct: 61  -RAAQVGGPLGTYLP-EHQWDVPLDYEAYAAIGAVVGHGGIVLHDDTSNLAALAEYAMKF 118

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
              ESCG+CTPCR G+   +  + R+ +G   +R+
Sbjct: 119 CAIESCGKCTPCRIGSTRGVETIARIRQGDTSERQ 153


>gi|213025627|ref|ZP_03340074.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 112

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/111 (33%), Positives = 61/111 (54%), Gaps = 1/111 (0%)

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMER 364
           ++ + + GS LGTA  + +D    ++  +  L  F+  ESCG CTPCR+G  W ++++  
Sbjct: 1   FESIGKAGSRLGTALAMAVDHEIGMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRA 60

Query: 365 LVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           L +G  Q  +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E 
Sbjct: 61  LERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEA 111


>gi|167720688|ref|ZP_02403924.1| formate dehydrogenase, beta subunit [Burkholderia pseudomallei
           DM98]
          Length = 143

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
              GG     LP  Q     +DY+    +G+ +G   +++ D ++++ +       F   
Sbjct: 2   AQVGGPLGTYLPESQ-WDIPLDYEAYAAVGAVVGHGGIVLHDDTSNLAELAEYAMHFCAL 60

Query: 343 ESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQ 402
           ESCG+CTPCR G+   +  + R+  G   +R++ LL ++   +   ++CA+G    +P+ 
Sbjct: 61  ESCGKCTPCRIGSTRGVETIARIRAGDTSERQVRLLRDLCDTMTAGSLCAMGGMTPYPVL 120

Query: 403 GLIKNFRPLI 412
             + +F    
Sbjct: 121 SALDHFPEDF 130


>gi|224550185|gb|ACN54177.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Nasonia longicornis]
 gi|224550187|gb|ACN54178.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Nasonia giraulti]
 gi|224550189|gb|ACN54179.1| putative NADH dehydrogenase I subunit F [Wolbachia endosymbiont of
           Nasonia longicornis]
          Length = 109

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/109 (63%), Positives = 85/109 (77%), Gaps = 1/109 (0%)

Query: 114 FAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYIC 172
            AI A  A+IY+RGEF  E   L+ A++E Y   L+G N+ K GYD+D+ +H GAGAYIC
Sbjct: 1   RAISASVAYIYIRGEFYNEYLVLKKALEEAYKENLIGKNACKSGYDLDVFIHRGAGAYIC 60

Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
           GEETA LES+EGKKG PR+KPPFPA VGL+G PTT+NNVE+IA+VP IL
Sbjct: 61  GEETAQLESIEGKKGFPRMKPPFPAGVGLFGYPTTINNVETIAMVPDIL 109


>gi|256003828|ref|ZP_05428815.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum DSM 2360]
 gi|255992166|gb|EEU02261.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum DSM 2360]
          Length = 403

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 108/330 (32%), Gaps = 62/330 (18%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ +           I+ ++ SGL G GGAGF   +K S  P    D    L++NA E E
Sbjct: 72  YEGIKPPSFSNSKEFISAIRESGLVGLGGAGFPAHVKLSPPPDKKID---TLIINAAECE 128

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   +      ++ G  I    +G     I +        +      +    +  
Sbjct: 129 PYITSDYREIIENSWNVVSGINIIMEILGIENVLIGIEDNKPEAIK------EMTRVAA- 181

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                    D  I V      Y  G E  L+ +  G+K  P      PA+VG+      V
Sbjct: 182 --------TDDRINVIKLKSRYPQGAEKMLIYATTGRKVPP---GKLPADVGV-----IV 225

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
            NV S++ +   ++ G               K  ++ G  V  P  VE  +     E + 
Sbjct: 226 MNVNSVSFISEYIKTGMPLIK----------KRVTVDGPSVKRPGNVEVLIGTPISE-VF 274

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
             CGG          ++ GG  +    A       +             T A++  D +T
Sbjct: 275 SFCGGFGIVP---KKILMGGPMMGI--AQYTLDTPVLKH----------TNALLAFDETT 319

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
            ++          K ++C +C  C      
Sbjct: 320 AVLP---------KEQACIRCGRCVRACPM 340


>gi|325681300|ref|ZP_08160829.1| putative protein HymB [Ruminococcus albus 8]
 gi|324106991|gb|EGC01278.1| putative protein HymB [Ruminococcus albus 8]
          Length = 252

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGA 58
               Q RI   N   +  + + + ++   +  + K+L+    D ++ EV  SG+RGRGGA
Sbjct: 144 FYRKQKRIALRNCGVIDPEDIEEYIATEGYQALYKVLDSMTPDEVVKEVLDSGIRGRGGA 203

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           GF TG KW F      D   Y+  NADE +PG   DR I+  +P
Sbjct: 204 GFPTGRKWMFTKDAPGD-VKYVACNADEGDPGAFMDRSILEGDP 246


>gi|125974915|ref|YP_001038825.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum ATCC 27405]
 gi|125715140|gb|ABN53632.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum ATCC 27405]
 gi|316939126|gb|ADU73160.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum DSM 1313]
          Length = 439

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 108/330 (32%), Gaps = 62/330 (18%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ +           I+ ++ SGL G GGAGF   +K S  P    D    L++NA E E
Sbjct: 108 YEGIKPPSFSNSKEFISAIRESGLVGLGGAGFPAHVKLSPPPDKKID---TLIINAAECE 164

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   +      ++ G  I    +G     I +        +      +    +  
Sbjct: 165 PYITSDYREIIENSWNVVSGINIIMEILGIENVLIGIEDNKPEAIK------EMTRVAA- 217

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                    D  I V      Y  G E  L+ +  G+K  P      PA+VG+      V
Sbjct: 218 --------TDDRINVIKLKSRYPQGAEKMLIYATTGRKVPP---GKLPADVGV-----IV 261

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
            NV S++ +   ++ G               K  ++ G  V  P  VE  +     E + 
Sbjct: 262 MNVNSVSFISEYIKTGMPLIK----------KRVTVDGPSVKRPGNVEVLIGTPISE-VF 310

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
             CGG          ++ GG  +    A       +             T A++  D +T
Sbjct: 311 SFCGGFGIVP---KKILMGGPMMGI--AQYTLDTPVLKH----------TNALLAFDETT 355

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
            ++          K ++C +C  C      
Sbjct: 356 AVLP---------KEQACIRCGRCVRACPM 376


>gi|315924585|ref|ZP_07920804.1| Na(+)-translocating NADH-quinone reductase subunit A
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622115|gb|EFV02077.1| Na(+)-translocating NADH-quinone reductase subunit A
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 410

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 112/332 (33%), Gaps = 66/332 (19%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
             ++      G +             IIN +K +G+ G GGA F T +K +  P    D 
Sbjct: 72  DPAIKPY---GDYQQY------SSSEIINIIKEAGIVGLGGATFPTHVKLTVSPDKHVDS 122

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
              +++N  E EP    D  +M+  P  +I G  IA  A+     +I             
Sbjct: 123 ---VILNGAECEPYLTADDHLMQDRPEKVIAGLHIAMRALDVSKGYI------------- 166

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
             A+++     +         D  + V      Y  G E  L+ ++ G++         P
Sbjct: 167 --AIEDNKPDAINAIVGVCKGDDAVEVIRLKTKYPQGAEKQLITAVTGREV---PSGGLP 221

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEE 256
           A+ G+      V NV + A V T    G   Y  +                V  P T+E 
Sbjct: 222 ADAGV-----VVMNVGTAAQVATTFETGMPLYKRYVT---------CTGDVVKNPATLEV 267

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            + +++ E+I++  G           VI GG          M G  M    +       G
Sbjct: 268 LVGMSYQEVIDECGG----FVQAPAKVISGGP---------MMGVAMLRTDIP---VMKG 311

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQC 348
           T+ V+       + K   +         CG+C
Sbjct: 312 TSGVL------CLSKEAAQTPEPTACIRCGRC 337


>gi|167038505|ref|YP_001666083.1| RnfABCDGE type electron transport complex subunit C
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256751374|ref|ZP_05492253.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116900|ref|YP_004187059.1| RnfABCDGE type electron transport complex subunit C
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166857339|gb|ABY95747.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749756|gb|EEU62781.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929991|gb|ADV80676.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 443

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 116/338 (34%), Gaps = 66/338 (19%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L +S+         K+ +     II  +K +G+ G GGAGF T +K S       D    
Sbjct: 109 LDESVKAKG-----KLEDLSPKEIIEIIKEAGITGMGGAGFPTHVKLSPPSDKKID---T 160

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           ++VN  E EP    D  +M   P  ++ G      A+G     I V         +L+ A
Sbjct: 161 ILVNGAECEPYLTTDHRLMVEYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREA 220

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                             + +I +      Y  G+E  L+ ++ G +  P      P +V
Sbjct: 221 ---------------SKDEKNIQIATLKVKYPQGDEKRLINAILG-RIVP--SGGLPMDV 262

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESM 258
           G+      V N  +   V   +  G   Y           ++ +I+GH +  P  +   +
Sbjct: 263 GV-----IVVNAATTKAVADAILEGKPLY----------ERVTTITGHGIKQPKNLLVKI 307

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
                +LIE+  G      D+   +I GG  +    A       +            GT 
Sbjct: 308 GTPLKDLIEQCGG---FTEDSPGKIISGGPMMGI--AQHSLDVPI----------IKGTG 352

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            ++++ +           +   + + C +C  C E   
Sbjct: 353 GILILTKKE---------ARPEQVQPCIKCGKCVEVCP 381


>gi|281418619|ref|ZP_06249638.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum JW20]
 gi|281407703|gb|EFB37962.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum JW20]
          Length = 439

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 108/330 (32%), Gaps = 62/330 (18%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ +           I+ ++ SGL G GGAGF   +K S  P    D    L++NA E E
Sbjct: 108 YEGIKPPSFSNSKEFISAIRESGLVGLGGAGFPAHVKLSPPPDKKID---TLIINAAECE 164

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   +      ++ G  I    +G     I +        +      +    +  
Sbjct: 165 PYITSDYREIIENSWNVVSGINIIMEILGIENVLIGIEDNKPEAIK------EMTRVAA- 217

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                    D  I V      Y  G E  L+ +  G+K  P      PA+VG+      V
Sbjct: 218 --------TDDRINVIKLKSRYPQGAEKMLIYATTGRKVPP---GKLPADVGV-----IV 261

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
            NV S++ +   ++ G               K  ++ G  V  P  VE  +     E + 
Sbjct: 262 MNVNSVSFISEYIKTGMPLIK----------KRVTVDGPSVKRPGNVEVLIGTPISE-VF 310

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
             CGG          ++ GG  +    A       +             T A++  D +T
Sbjct: 311 SFCGGFDIVP---KKILMGGPMMGI--AQYTLDTPVLKH----------TNALLAFDETT 355

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
            ++          K ++C +C  C      
Sbjct: 356 AVLP---------KEQACIRCGRCVRACPM 376


>gi|307718965|ref|YP_003874497.1| transporter [Spirochaeta thermophila DSM 6192]
 gi|306532690|gb|ADN02224.1| transporter [Spirochaeta thermophila DSM 6192]
          Length = 444

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 128/374 (34%), Gaps = 67/374 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     II  +K +G+ G GGAGF T +K S  P    D    L++N  E EP    D  
Sbjct: 121 DLSPQEIIERIKDAGIVGMGGAGFPTHVKLSIPPGKAID---TLIINGVECEPYLTADHR 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  +   ++ G  I   A+G    FI +          ++  V E              
Sbjct: 178 LMLEKTDEILVGIAIIRRALGEPRVFIGIEANKPDAIRVMKERVKEWEG----------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + V      Y  G E  L+++L G +  P  K   P +VG       V+NV +   
Sbjct: 227 ----LEVRPLKVKYPQGAEKQLIKALTG-REVPSGK--LPLDVG-----CVVSNVGTAHA 274

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +++                ++ +++G  ++ P      +    + ++++  G    
Sbjct: 275 VYRAVQKQMPLV----------ERVVTVTGNDISRPGNFLVRVGTQVEWVLDQAGGLPED 324

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               +      G ++P L                E+     T+ ++V+ R          
Sbjct: 325 AGKVVAGGPMMGKALPNL----------------EVPVTKTTSGILVLPRKD-------- 360

Query: 336 LSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                  E C +C  C +     +   ++ERL      +        +   +E  + CA 
Sbjct: 361 -VGPRSVEPCIRCAKCVQACPMGLEPYLLERLSARERWEE--AEARGIVDCVECGS-CAY 416

Query: 394 GDAAAWPIQGLIKN 407
              A+ P+   I+ 
Sbjct: 417 ICPASRPLLDYIRY 430


>gi|304382697|ref|ZP_07365189.1| Na(+)-translocating NADH-quinone reductase subunit A [Prevotella
           marshii DSM 16973]
 gi|304336148|gb|EFM02392.1| Na(+)-translocating NADH-quinone reductase subunit A [Prevotella
           marshii DSM 16973]
          Length = 452

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 111/324 (34%), Gaps = 59/324 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + II ++K +G+ G GGAGF T +K +  P   ++    +++NA E EP    D  
Sbjct: 124 ELTPESIIEKIKTAGITGMGGAGFPTFIKLTPPPTAKAEC---IIINAVECEPYITSDYR 180

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M      ++ G  +   A      +I +     +     +                K  
Sbjct: 181 LMMEHADEILVGLELLMKAAKVTKGYIGIEDNKPKAITLFEE---------------KTA 225

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +   A  Y  G E  L++++  +  Q    P  P NVG       V NV +   
Sbjct: 226 GRTDIEIVPLAKKYPQGGEKQLVDAVIHR--QVPAPPAIPVNVG-----AVVQNVGTAFA 278

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   + +    +  +      G KL        +P      M     +LIE  CGG+  G
Sbjct: 279 VYQAVMKNKPLFERYTT--VTGKKL-------AHPGNFLVRMGTPMKDLIE-ACGGMPKG 328

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            + LL    GG  +    A       +            GT AV ++  +    + +   
Sbjct: 329 DNKLL---AGGPMMG--KALTSADVPVCK----------GTNAVTILTDNDAGRQEV--- 370

Query: 337 SVFYKHESCGQCTPCREGTGWMMR 360
                 + C +C  C       + 
Sbjct: 371 ------QPCIRCAKCVSACPMGLE 388


>gi|150006370|ref|YP_001301114.1| Na+-transporting NADH:ubiquinone oxidoreductase, electron transport
           complex protein rnfC [Bacteroides vulgatus ATCC 8482]
 gi|254881724|ref|ZP_05254434.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           4_3_47FAA]
 gi|294776233|ref|ZP_06741718.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           vulgatus PC510]
 gi|319643689|ref|ZP_07998306.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           3_1_40A]
 gi|149934794|gb|ABR41492.1| Na+-transporting NADH:ubiquinone oxidoreductase, electron transport
           complex protein rnfC [Bacteroides vulgatus ATCC 8482]
 gi|254834517|gb|EET14826.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           4_3_47FAA]
 gi|294449916|gb|EFG18431.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           vulgatus PC510]
 gi|317384719|gb|EFV65681.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           3_1_40A]
          Length = 445

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 126/366 (34%), Gaps = 65/366 (17%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + G    +S+ R     + K      + I+ +VK +G+ G GGA F T +K S  P   +
Sbjct: 99  VDGDEWEESIDRS--STLVKECALTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKA 156

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M  +   ++ G  I   A      +I +        +
Sbjct: 157 EC---VIINAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTKGYIGIENNKPDAIK 213

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +        A+   G          I V      Y  G E  L++++ G+  Q    P 
Sbjct: 214 LMTE-----KAAQYPG----------IEVVPLQVKYPQGGEKQLIDAVIGR--QVPAPPA 256

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            P NVG       V NV +   V   ++          +      ++ +++G  V  P  
Sbjct: 257 IPINVG-----AVVQNVGTAFAVYEAVQ----------KNKPLFERIVTVTGKSVKNPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               M     +LI+   G           VI GG  +    A       +          
Sbjct: 302 FLTRMGTPMSQLIDAAGGLPEDTGK----VIGGGPMMG--KALVNTEVPICK-------- 347

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
             G++ V++M+      +A        + + C +C  C       +     L+  ++  +
Sbjct: 348 --GSSGVLIMNDK----EAAR-----AEAQPCIRCAKCVSVCPMGLEPF--LLATLSAHK 394

Query: 374 EIDLLY 379
           + + + 
Sbjct: 395 DWERVE 400


>gi|212691453|ref|ZP_03299581.1| hypothetical protein BACDOR_00945 [Bacteroides dorei DSM 17855]
 gi|237726261|ref|ZP_04556742.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           D4]
 gi|212666063|gb|EEB26635.1| hypothetical protein BACDOR_00945 [Bacteroides dorei DSM 17855]
 gi|229434787|gb|EEO44864.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides dorei
           5_1_36/D4]
          Length = 445

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 126/366 (34%), Gaps = 65/366 (17%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + G    +S+ R     + K      + I+ +VK +G+ G GGA F T +K S  P   +
Sbjct: 99  VDGDEWEESIDRS--STLVKECALTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKA 156

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M  +   ++ G  I   A      +I +        +
Sbjct: 157 EC---VIINAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTKGYIGIENNKPDAIK 213

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +        A+   G          I V      Y  G E  L++++ G+  Q    P 
Sbjct: 214 LMTE-----KAAQYPG----------IEVVPLQVKYPQGGEKQLIDAVIGR--QVPAPPA 256

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            P NVG       V NV +   V   ++          +      ++ +++G  V  P  
Sbjct: 257 IPINVG-----AVVQNVGTAFAVYEAVQ----------KNKPLFERIVTVTGKSVRNPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               M     +LI+   G           VI GG  +    A       +          
Sbjct: 302 FLTRMGTPMSQLIDAAGGLPEDTGK----VIGGGPMMG--KALVNTEVPICK-------- 347

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
             G++ V++M+      +A        + + C +C  C       +     L+  ++  +
Sbjct: 348 --GSSGVLIMNDK----EAAR-----AEAQPCIRCAKCVNVCPMGLEPF--LLATLSAHK 394

Query: 374 EIDLLY 379
           + + + 
Sbjct: 395 DWERVE 400


>gi|237712107|ref|ZP_04542588.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           9_1_42FAA]
 gi|229453428|gb|EEO59149.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           9_1_42FAA]
          Length = 445

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 126/366 (34%), Gaps = 65/366 (17%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + G    +S+ R     + K      + I+ +VK +G+ G GGA F T +K S  P   +
Sbjct: 99  VDGDEWEESIDRS--STLVKECALTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKA 156

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M  +   ++ G  I   A      +I +        +
Sbjct: 157 EC---VIINAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTRGYIGIENNKPDAIK 213

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +        A+   G          I V      Y  G E  L++++ G+  Q    P 
Sbjct: 214 LMTE-----KAAQYPG----------IEVVPLQVKYPQGGEKQLIDAVIGR--QVPAPPA 256

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            P NVG       V NV +   V   ++          +      ++ +++G  V  P  
Sbjct: 257 IPINVG-----AVVQNVGTAFAVYEAVQ----------KNKPLFERIVTVTGKSVRNPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               M     +LI+   G           VI GG  +    A       +          
Sbjct: 302 FLTRMGTPMSQLIDAAGGLPEDTGK----VIGGGPMMG--KALVNTEVPICK-------- 347

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
             G++ V++M+      +A        + + C +C  C       +     L+  ++  +
Sbjct: 348 --GSSGVLIMNDK----EAAR-----AEAQPCIRCAKCVNVCPMGLEPF--LLATLSAHK 394

Query: 374 EIDLLY 379
           + + + 
Sbjct: 395 DWERVE 400


>gi|295092894|emb|CBK81985.1| electron transport complex, RnfABCDGE type, C subunit [Coprococcus
           sp. ART55/1]
          Length = 441

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/356 (19%), Positives = 116/356 (32%), Gaps = 71/356 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
            NV  +    R+ +   +K +G+ G GGAGF   +K S   +   D   Y++VN  E EP
Sbjct: 112 ANVKDLSTLYREDVKEIIKEAGIVGMGGAGFPANVKLSPKNEDAID---YIIVNGAECEP 168

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D   M  EP  LI G  I           I +        E L+  V +       
Sbjct: 169 YLTSDYRRMMEEPDKLILGLEICINLFDHAKGIIAIEDNKPEAIELLRDKVKD------- 221

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                   +  I VH     Y  G E  L+ +  G+    ++    PA+ G       V+
Sbjct: 222 --------NDKIEVHVMKTKYPQGAERQLIYANTGRYVNSKM---LPADAG-----CIVH 265

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV++I  +   +  G   Y          T++ +I+G  +  PC +   +     ELIE 
Sbjct: 266 NVDTIVSIYEAVIEGRPLY----------TRIVTITGDAIENPCNLMVRIGTNCQELIEA 315

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                            GG     +P   + G  M    L  +          ++  + D
Sbjct: 316 A----------------GGFKDGVVPEKVISGGPMMGKALFSLDVPATKGVSALLCMTHD 359

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +  +       +  +C +C  C +              G      +  L E    
Sbjct: 360 EVADL-------EPSNCIRCGRCVDVCP-----------GRIVPSMLASLAEHGDT 397


>gi|167038752|ref|YP_001661737.1| RnfABCDGE type electron transport complex subunit C
           [Thermoanaerobacter sp. X514]
 gi|300913662|ref|ZP_07130979.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter sp. X561]
 gi|307723323|ref|YP_003903074.1| RnfABCDGE type electron transport complex subunit C
           [Thermoanaerobacter sp. X513]
 gi|166852992|gb|ABY91401.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter sp. X514]
 gi|300890347|gb|EFK85492.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter sp. X561]
 gi|307580384|gb|ADN53783.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter sp. X513]
          Length = 443

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 110/321 (34%), Gaps = 61/321 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     II  ++ +G+ G GGAGF T +K S       D    ++VN  E EP    D  
Sbjct: 121 DLSPKEIIEIIREAGITGMGGAGFPTHVKLSPPSDKKID---TILVNGAECEPYLTTDHR 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M   P  ++ G      A+G     I V         +L+ A                 
Sbjct: 178 LMVEYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREA---------------SK 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + +I +      Y  G+E  L+ ++ G +  P      P +VG+      V N  +   
Sbjct: 223 DEKNIQIATLKVKYPQGDEKRLINAILG-RIVP--SGGLPMDVGV-----IVVNAATTKA 274

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +  G   Y           ++ +I+GH +  P  +   +     +LIE+  G    
Sbjct: 275 VADAILEGKPLY----------ERVTTITGHGIKQPKNLLVKIGTPLKDLIEQCGG---F 321

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             D+   +I GG  +    A       +            GT  ++++ +          
Sbjct: 322 TEDSPGKIISGGPMMGI--AQHSLDVPI----------IKGTGGILILTKKE-------- 361

Query: 336 LSVFYKHESCGQCTPCREGTG 356
            +   + + C +C  C E   
Sbjct: 362 -ARPEQVQPCIKCGKCVEVCP 381


>gi|330997032|ref|ZP_08320894.1| electron transport complex, RnfABCDGE type, C subunit
           [Paraprevotella xylaniphila YIT 11841]
 gi|329571530|gb|EGG53212.1| electron transport complex, RnfABCDGE type, C subunit
           [Paraprevotella xylaniphila YIT 11841]
          Length = 447

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 127/360 (35%), Gaps = 65/360 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+N VKA+G+ G GGA F   +K +      ++    +++NA E EP    D  
Sbjct: 122 ELTAEDIVNTVKAAGIVGMGGATFPCHVKLTPPKGTKAEC---VIINAVECEPYLTADHR 178

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++  +P  ++ G  +   A+G    +I +          L    ++  A           
Sbjct: 179 LLLEKPDEILVGVDLIMKAVGVDKGYIGIENNKPDAIALLT---EKAKAYP--------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I V      Y  G E  L+ ++ G+  +    P  P NVG       V NV ++  
Sbjct: 227 ---HIEVVPLQVKYPQGGEKQLIAAVTGR--EVPAPPALPINVG-----AVVQNVGTVFA 276

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +          Y    +      ++ +++G  V  P  +   +    ++LIE+ CGG+  
Sbjct: 277 I----------YEAVMKNKPLFERVITVTGKEVQNPSNLLARIGTPMNQLIEE-CGGL-- 323

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             +N   VI GG  +    A       +            G++ +++M           R
Sbjct: 324 -PENTGKVIGGGPMMG--KALMNLDVPVCK----------GSSGLLLMSE---------R 361

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
            S   + + C +C  C       +           +  E+    +++  IE    C    
Sbjct: 362 ESRRAEPQPCIRCAKCVSACPMGLEPYLLATASALRNWELAEDNDITSCIE----CGSCQ 417


>gi|300727611|ref|ZP_07061000.1| electron transport complex protein RnfC [Prevotella bryantii B14]
 gi|299775131|gb|EFI71734.1| electron transport complex protein RnfC [Prevotella bryantii B14]
          Length = 472

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 114/355 (32%), Gaps = 64/355 (18%)

Query: 8   IFTNLYGLQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           I  N+         +S+ R    + +    E   + I+N VK +G+ G GGAGF T +K 
Sbjct: 97  IIINVDEEDEW--EESIDRSDTLETLAAHPELTSEEIVNRVKVAGVTGMGGAGFPTFIKL 154

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
              P   ++   ++++NA E EP    D  +M      ++ G  +   A      FI + 
Sbjct: 155 CPPPTAKAE---FVIINAVECEPYITSDYRLMMEHADEILVGVELLMKAAKVDKGFIGIE 211

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
                    L    + C                 I V      Y  G E  L++++ G+ 
Sbjct: 212 ENKPEAIRLLT---ELCKEHAG------------IEVVPLKTKYPQGGEKQLVDAVVGR- 255

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
            Q    P  P NVG       V NV +   V          Y    +      +  +++G
Sbjct: 256 -QVPAPPAIPVNVG-----AIVQNVGTAYAV----------YQAVMKNKPLFERYTTVTG 299

Query: 247 -HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDY 305
            H+  P      M     +LIE   G        L      G +V  L         +  
Sbjct: 300 KHIKNPSNFLVRMGTPMSQLIEACGGLPDDDNKVLAGGPMMGKAVISL------DVPVCK 353

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                     GT A+ V+       K           ++C +C  C E     + 
Sbjct: 354 ----------GTNAITVLTGKDAHRKEA---------QACIRCGKCVEACPMGLE 389


>gi|315186451|gb|EFU20211.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta
           thermophila DSM 6578]
          Length = 444

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 132/374 (35%), Gaps = 67/374 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     II  +K +G+ G GGAGF T +K S  P    D    L++N  E EP    D  
Sbjct: 121 DLSPQEIIERIKEAGIVGMGGAGFPTHVKLSIPPGKEID---TLIINGVECEPYLTADHR 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  +   ++ G  +   A+G    FI +        + ++  V E              
Sbjct: 178 LMLEKTDEILVGISLIRKALGGPRVFIGIEANKPDAIKVMRERVKEWEG----------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + V      Y  G E  L+++L G +  P  K   P +VG       V+NV +   
Sbjct: 227 ----MEVRPLKVKYPQGAEKQLIKALTG-REVPSGK--LPLDVG-----CVVSNVGTAHA 274

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +++G               ++ +++G H++ P      +    + +  +  G    
Sbjct: 275 VYRAVQKGIPLV----------ERVVTVTGKHLSRPGNFFLRVGTPLEWVFSQLGGLPAD 324

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               +      G ++P L                E+     T+ ++V+ R     + + R
Sbjct: 325 TGKVIAGGPMMGKALPNL----------------EVPVTKTTSGILVLPRE----EVVRR 364

Query: 336 LSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                  E C +C  C +     +   ++ERL      +        V   +E  + CA 
Sbjct: 365 PV-----EPCIRCAKCVQACPMGLEPYLLERLSARERWEE--AEARGVVDCVECGS-CAY 416

Query: 394 GDAAAWPIQGLIKN 407
              A+ P+   I+ 
Sbjct: 417 ICPASRPLLDYIRY 430


>gi|167767284|ref|ZP_02439337.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1]
 gi|167711259|gb|EDS21838.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1]
          Length = 450

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  +D ++  +K +G+ G GGAGF T +K   +     D   Y++VN  E EP    D  
Sbjct: 129 QMSKDDVLAAIKEAGIVGLGGAGFPTHVK---LAPKDPDAIEYIIVNGAECEPYITGDYR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           I+   P  LIEG  I           I +          ++A V                
Sbjct: 186 ILMETPELLIEGLNIVLDMFPKAKGIIGIEDNKKDAIAKVEALVKG-------------- 231

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I V      Y  G E +L+ +  G+     +    PA+ G       V+NV +I  
Sbjct: 232 -DARISVATLKTKYPQGAERSLIYATTGRSINSSM---LPADAG-----CIVDNVATIVA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   ++ G   Y           ++ +++G  +  P   +        ELIE   G    
Sbjct: 283 IKEAVKDGKPLY----------ERVVTVTGDAIKNPSNFKVRTGTNVQELIEAAGG---- 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  +I GG          M G  M    +  + +    +  +   +     +    
Sbjct: 329 FKTQPEKIISGGP---------MMGMAMFTTDVPAVKTF---SCFLAFTKD----EVAAN 372

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                +  +C +C  C      
Sbjct: 373 -----QPSNCIRCGRCVSVCPQ 389


>gi|332879376|ref|ZP_08447073.1| electron transport complex, RnfABCDGE type, C subunit
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682796|gb|EGJ55696.1| electron transport complex, RnfABCDGE type, C subunit
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 447

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/360 (18%), Positives = 128/360 (35%), Gaps = 65/360 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + I+N+VKA+G+ G GGA F   +K +      ++    +++NA E EP    D  
Sbjct: 122 ELTAEDIVNKVKAAGIVGMGGATFPCHVKLTPPKGTKAEC---VIINAVECEPYLTADHR 178

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  +P  ++ G  +   A+G    +I +          L    ++  A           
Sbjct: 179 LMLEKPDEILVGVDLIMKAVGVDKGYIGIENNKPDAIALLT---EKAKAYS--------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I +      Y  G E  L+ ++ G+  +    P  P NVG       V NV ++  
Sbjct: 227 ---HIEIVPLQVKYPQGGEKQLIAAVTGR--EVPAPPALPINVG-----AVVQNVGTVFA 276

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +          Y    +      ++ +++G  V  P  +   +    ++LIE+ CGG+  
Sbjct: 277 I----------YEAVMKNKPLFERVITVTGKEVQNPSNLLARIGTPMNQLIEE-CGGL-- 323

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             +N   VI GG  +    A       +            G++ +++M           R
Sbjct: 324 -PENTGKVIGGGPMMG--KALMNLDVPVCK----------GSSGLLLMSE---------R 361

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
            S   + + C +C  C       +           +  E+    +++  IE    C    
Sbjct: 362 ESRRAEPQPCIRCAKCVSACPMGLEPYLLATASALRNWELAEENDITSCIE----CGSCQ 417


>gi|265751808|ref|ZP_06087601.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           3_1_33FAA]
 gi|263236600|gb|EEZ22070.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           3_1_33FAA]
          Length = 445

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 124/366 (33%), Gaps = 65/366 (17%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + G    +S+ R     + K      + I+ +VK +G+ G GGA F T +K S  P   +
Sbjct: 99  VDGDEWEESIDRS--STLVKECAFTPEEIVAKVKNAGVVGMGGACFPTHVKLSPPPGCKA 156

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M  +   ++ G  I   A      +I +        +
Sbjct: 157 EC---VIINAVECEPYLTADHRLMLEKADEVLVGVSILMKAAKVTKGYIGIENNKPDAIK 213

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +        A+   G          I V      Y  G E  L++++  +  Q    P 
Sbjct: 214 LMTE-----KAAQYPG----------IEVVPLQVKYPQGGEKQLIDAVISR--QVPAPPA 256

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            P NVG       V NV +   V   ++          +      ++ +++G  V  P  
Sbjct: 257 IPINVG-----AVVQNVGTAFAVYEAVQ----------KNKPLFERIVTVTGKSVKNPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               M     +LI+   G           VI GG  +    A       +          
Sbjct: 302 FLTRMGTPMSQLIDAAGGLPEDTGK----VIGGGPMMG--KALVNTEVPICK-------- 347

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
             G++ V++M+      +A        +   C +C  C       +     L+  ++  +
Sbjct: 348 --GSSGVLIMNDK----EAAR-----AEESPCIRCAKCVSVCPMGLEPF--LLATLSAHK 394

Query: 374 EIDLLY 379
           + + + 
Sbjct: 395 DWERVE 400


>gi|317497311|ref|ZP_07955634.1| electron transport complex [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895380|gb|EFV17539.1| electron transport complex [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 438

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  +D ++  +K +G+ G GGAGF T +K   +     D   Y++VN  E EP    D  
Sbjct: 117 QMSKDDVLAAIKEAGIVGLGGAGFPTHVK---LAPKDPDAIEYIIVNGAECEPYITGDYR 173

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           I+   P  LIEG  I           I +          ++A V                
Sbjct: 174 ILMETPELLIEGLNIVLDMFPKAKGIIGIEDNKKDAIAKVEALVKG-------------- 219

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I V      Y  G E +L+ +  G+     +    PA+ G       V+NV +I  
Sbjct: 220 -DARISVATLKTKYPQGAERSLIYATTGRSINSSM---LPADAG-----CIVDNVATIVA 270

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   ++ G   Y           ++ +++G  +  P   +        ELIE   G    
Sbjct: 271 IKEAVKDGKPLY----------ERVVTVTGDAIKNPSNFKVRTGTNVQELIEAAGG---- 316

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  +I GG          M G  M    +  + +    +  +   +     +    
Sbjct: 317 FKTQPEKIISGGP---------MMGMAMFTTDVPAVKTF---SCFLAFTKD----EVAAN 360

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                +  +C +C  C      
Sbjct: 361 -----QPSNCIRCGRCVSVCPQ 377


>gi|291559406|emb|CBL38206.1| electron transport complex, RnfABCDGE type, C subunit
           [butyrate-producing bacterium SSC/2]
          Length = 438

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  +D ++  +K +G+ G GGAGF T +K   +     D   Y++VN  E EP    D  
Sbjct: 117 QMSKDDVLAAIKEAGIVGLGGAGFPTHVK---LAPKDPDAIEYIIVNGAECEPYITGDYR 173

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           I+   P  LIEG  I           I +          ++A V                
Sbjct: 174 ILMETPELLIEGLNIVLDMFPKAKGIIGIEDNKKDAIAKVEALVKG-------------- 219

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I V      Y  G E +L+ +  G+     +    PA+ G       V+NV +I  
Sbjct: 220 -DARISVATLKTKYPQGAERSLIYATTGRSINSSM---LPADAG-----CIVDNVATIVA 270

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   ++ G   Y           ++ +++G  +  P   +        ELIE   G    
Sbjct: 271 IKEAVKDGKPLY----------ERVVTVTGDAIKNPSNFKVRTGTNVQELIEAAGG---- 316

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  +I GG          M G  M    +  + +    +  +   +     +    
Sbjct: 317 FKTQPEKIISGGP---------MMGMAMFTTDVPAVKTF---SCFLAFTKD----EVAAN 360

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                +  +C +C  C      
Sbjct: 361 -----QPSNCIRCGRCVSVCPQ 377


>gi|331268942|ref|YP_004395434.1| RnfABCDGE type electron transport complex subunit C [Clostridium
           botulinum BKT015925]
 gi|329125492|gb|AEB75437.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum BKT015925]
          Length = 440

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/332 (19%), Positives = 120/332 (36%), Gaps = 62/332 (18%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G +       +  ++ II  VK +G+ G GGA F T +K +  P    D    +++N  E
Sbjct: 108 GEFTKPKNYTDMTKEEIIELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIILNGAE 164

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EP    D  +M  E + ++EG  I          +I +        E+L+ A  +    
Sbjct: 165 CEPYLTCDHRLMLEETNMIVEGLKIILHMHPNAKGYIGIEDNKKNAIEALRNATKDI--- 221

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                        +I V      Y  G E  L+ S+  K+  P  K   PA+ G      
Sbjct: 222 ------------PNIEVKALKTKYPQGAEKQLIYSVM-KREVPSGK--LPADAG-----C 261

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDEL 265
            V NV ++  V   +  G              +++ +++G  V  P  +   + +++ EL
Sbjct: 262 IVQNVNTVREVYNAVVNG----------RPTTSRVVTVTGEAVKNPKNLRVRLGMSYREL 311

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           +E   G      ++ + VI GG  +            M    L ++    G++ ++ +  
Sbjct: 312 VEACDG----FKEDPVKVISGGPMMG-----------MGISTL-DVPVIKGSSGILCLTE 355

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
              ++             SC +C  C E    
Sbjct: 356 KQAVLP---------DESSCIRCGRCAEVCPM 378


>gi|323704921|ref|ZP_08116498.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535847|gb|EGB25621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 455

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 117/323 (36%), Gaps = 60/323 (18%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
              D + N V  +G+ G GGAGF T  K +            +++N  E EP    DR +
Sbjct: 1   MNIDELKNIVFENGIVGAGGAGFPTHAKLTT-------GIDTIILNGAECEPLLRVDRQL 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           +      ++         +GA    +               A+   Y + +    + +G 
Sbjct: 54  LAIYTDEILMTLSFVVDTLGARSGIV---------------AIKSAYKAAIDSVKNLIGN 98

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
             ++ +      Y  G+E  L+    G +  P  +   P +VG     T V NVE++  V
Sbjct: 99  YKNLELKVLPDVYPAGDEVVLIYETTG-RIVP--EGSIPISVG-----TIVMNVETVLNV 150

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
                     Y+    ++    K  +++G+V  P T +  +  +  ELIEK  G +   +
Sbjct: 151 ----------YNAIYLKHPVTEKYVTVTGNVKCPSTFKVKVGTSVAELIEKAGGCLEEDY 200

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII-KAIWRL 336
           +    VI GG     +               ++      T A+IV+ +   +I K    +
Sbjct: 201 E----VIMGGPMTGKIVD-------------RKAPITKTTKAIIVLPKDHPVITKRKTNI 243

Query: 337 SVFYKHE--SCGQCTPCREGTGW 357
           S+  K     C QC  C +    
Sbjct: 244 SIELKRAMSVCSQCQMCTDLCPR 266


>gi|302389269|ref|YP_003825090.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199897|gb|ADL07467.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 438

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 122/352 (34%), Gaps = 66/352 (18%)

Query: 29  WDNVD--KIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           ++ V   K L E   D I N ++ +G+ G GGAGF T +K S       D    ++VN  
Sbjct: 107 YEGVKPPKSLDEMTPDEIKNLIREAGIVGMGGAGFPTQVKLSPPAGKTID---TIIVNGA 163

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P  ++ G      A G   A+I +        +++  AV     
Sbjct: 164 ECEPYLTADHRLMVERPDDVVLGLRAIMKATGVEKAYIGIEDNKPDAIKAMNDAVKGFKG 223

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                          I V   A  Y  G E  L+ ++ G +  P    P   +V      
Sbjct: 224 ---------------IEVVPLATKYPQGGEKQLIYAITG-REVPSGGLPMDVHV------ 261

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
             V+N  + A +  +L+ G             G         V  P  +   +     EL
Sbjct: 262 -IVDNAGTCAAIANVLKTGMPLIERITTVTGSG---------VKEPKNLMVRIGTPVGEL 311

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           IE+ CGG  G       VI GG  +                   E+    GT+ V+V+ +
Sbjct: 312 IEQ-CGGFNGEPGK---VIMGGPMMGV------------SQSQLEVPVIKGTSGVLVLKK 355

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERL-VKGIAQKRE 374
           S             ++   C +C  C +      +   + +L  +G+  + E
Sbjct: 356 SE---------VKLFEPMPCIRCARCVDACPIHLLPTYLGKLAERGMWVEAE 398


>gi|160879334|ref|YP_001558302.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Clostridium phytofermentans ISDg]
 gi|160428000|gb|ABX41563.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium phytofermentans ISDg]
          Length = 442

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 119/325 (36%), Gaps = 64/325 (19%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
              + +   VK  G+ G GGAGF T  K+S       ++   +++N  E EP     R +
Sbjct: 2   MVIEELSQIVKEYGICGAGGAGFPTYAKFS-------NKVDTIILNCAECEPLLKLHRQL 54

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           +R   + +++   I + +IGA  A I V+  +     +++A +               G 
Sbjct: 55  LRDRAYEVLKAFSIIAESIGAKEAIIVVKPSYKNTIAAVEAEI---------------GA 99

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
             ++ +      Y  G+E  L+    G+  +P      P ++G+      V NVE++  V
Sbjct: 100 YKNMSLKLCKEVYPAGDEVVLIYEATGRVVKP---GGLPVDIGV-----AVFNVETVYNV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
                     Y          +KL S+ G V  P TV   + +T  E++E   G      
Sbjct: 152 ----------YEAVINHRPVTSKLVSVVGEVKEPKTVRVPLGMTVKEVVEMVGGITTKEP 201

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               A + GG  +  + + Q                   + A+IV+ +   +I  I + S
Sbjct: 202 ----AYLMGGPMMGSVESEQHLIT-------------KTSNAIIVLPKDHYVI--IRKES 242

Query: 338 VF-----YKHESCGQCTPCREGTGW 357
                      SC  C  C +    
Sbjct: 243 KPSIDLKRAAASCCHCEMCTDLCPR 267


>gi|325570424|ref|ZP_08146201.1| electron transport complex protein RnfC [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156634|gb|EGC68811.1| electron transport complex protein RnfC [Enterococcus casseliflavus
           ATCC 12755]
          Length = 445

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 74/356 (20%), Positives = 123/356 (34%), Gaps = 70/356 (19%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           I  N Y  Q   LS       W +         + I+N+++  G+ G+GGA F T +K+S
Sbjct: 101 IIENDYAYQNDFLSAPF---DWQSAAN------ETILNKIRQGGVAGKGGATFPTHVKFS 151

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                 + + H L++N  E EP    D  +M+ E   +I G  IA   +      I +  
Sbjct: 152 I---DETQKIHTLILNGSECEPFLRSDAFLMQKEAQKIIHGAKIAQKLLDGPKIIIGIED 208

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
           +  R   ++QAA                  D  I V      Y  G E  L+E L  ++ 
Sbjct: 209 DKPRAISAMQAA---------------SAEDDTIEVVTVPTVYPTGGEKQLVELLTDQEV 253

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
                    A++G+      + NV +   +   +            +     +  +++G 
Sbjct: 254 ---PLGGLTADIGI-----VLINVATSFAIAEAVCY----------DKPLIERYTTVTGD 295

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           V  PC V+  +     ELI+   G        +L     G SV  L              
Sbjct: 296 VQNPCIVKNPLGTLAGELIDFAGGFQGAPSKLILGGPMMGKSVKTL-------------- 341

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
             ++    G+  ++V +  TD           Y    C +C  C E     +  ME
Sbjct: 342 --KVPVTKGSNGIVVFNEETD---------WLYAENPCIRCNKCVEACPMRLMPME 386


>gi|302559184|ref|ZP_07311526.1| LOW QUALITY PROTEIN: NADH-ubiquinone dehydrogenase chain F
           [Streptomyces griseoflavus Tu4000]
 gi|302476802|gb|EFL39895.1| LOW QUALITY PROTEIN: NADH-ubiquinone dehydrogenase chain F
           [Streptomyces griseoflavus Tu4000]
          Length = 328

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 102/237 (43%), Gaps = 24/237 (10%)

Query: 13  YGLQGKSL-SDSMSRGHWDNVDKILEKGRDW-------------IINEVKASGLRGRGGA 58
            GL    L +D  + G    +   LE+                 ++  V+A+GL GRGGA
Sbjct: 19  GGLDDVRLLADWYATGRPATLADHLERHGPPPVTAAGGSPPSVPLVEAVEAAGLTGRGGA 78

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF T  K   +           VVNA ESEP + KD+ ++   PH +++G V+A+ A+GA
Sbjct: 79  GFPTARKLRAVAGRRRRAVV--VVNAMESEPASRKDQFLLAVAPHLVLDGAVLAASAVGA 136

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETAL 178
               + +  +   +   + AA+DE   + L               H     Y+  E TAL
Sbjct: 137 DTVHVCLPRDRPAQYRRMDAALDERRRARLDRVRLLA--------HALPHTYVSSESTAL 188

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGREN 235
           +  L G   +P+  PP     G+   PT V+N E++A +  I R G  W+   G   
Sbjct: 189 VHWLNGGPARPQGGPPGNRERGVDRRPTLVSNAETLAHLALIARHGPGWFRRLGTRG 245


>gi|148378371|ref|YP_001252912.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|148287855|emb|CAL81921.1| electron transport complex protein [Clostridium botulinum A str.
           ATCC 3502]
          Length = 439

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  E   ++EG  I          +I +        E+++ A +               
Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+ +++G++ Q       PA+ G       V N  ++  
Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G  V  P  +   +     EL+E  CGG + 
Sbjct: 272 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 320

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                + VI GG  +            M    L ++ +  G++ ++ +  +  ++     
Sbjct: 321 DP---VKVISGGPMMG-----------MTIPTL-DIPTVKGSSGLLSLTTAQAVLPQA-- 363

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                   SC +C  C E    
Sbjct: 364 -------SSCIRCGRCVEACPM 378


>gi|170755456|ref|YP_001780021.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum B1 str. Okra]
 gi|169120668|gb|ACA44504.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 439

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  E   ++EG  I          +I +        E+++ A +               
Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+ +++G++ Q       PA+ G       V N  ++  
Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G  V  P  +   +     EL+E  CGG + 
Sbjct: 272 IYNAVVLG----------RPLTERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 320

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                + VI GG  +            M    L ++ +  G++ ++ +  +  ++     
Sbjct: 321 DP---VKVISGGPMMG-----------MTIPTL-DIPTVKGSSGLLSLTAAQAVLPQA-- 363

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                   SC +C  C E    
Sbjct: 364 -------SSCIRCGRCVEACPM 378


>gi|168177711|ref|ZP_02612375.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum NCTC 2916]
 gi|182670754|gb|EDT82728.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum NCTC 2916]
          Length = 439

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  E   ++EG  I          +I +        E+++ A +               
Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+ +++G++ Q       PA+ G       V N  ++  
Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G  V  P  +   +     EL+E  CGG + 
Sbjct: 272 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 320

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                + VI GG  +            M    L ++ +  G++ ++ +  +  ++     
Sbjct: 321 DP---VKVISGGPMMG-----------MTIPTL-DIPTVKGSSGLLSLTTAQAVLPQA-- 363

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                   SC +C  C E    
Sbjct: 364 -------SSCIRCGRCVEACPM 378


>gi|153938550|ref|YP_001389736.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum F str. Langeland]
 gi|168181230|ref|ZP_02615894.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum Bf]
 gi|170759143|ref|YP_001785705.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|226947599|ref|YP_002802690.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|237793688|ref|YP_002861240.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|152934446|gb|ABS39944.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum F str. Langeland]
 gi|169406132|gb|ACA54543.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|182675506|gb|EDT87467.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum Bf]
 gi|226843244|gb|ACO85910.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|229260411|gb|ACQ51444.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|295317824|gb|ADF98201.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum F str. 230613]
          Length = 439

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  E   ++EG  I          +I +        E+++ A +               
Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+ +++G++ Q       PA+ G       V N  ++  
Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G  V  P  +   +     EL+E  CGG + 
Sbjct: 272 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 320

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                + VI GG  +       M    +D   +K      G++ ++ +  +  ++     
Sbjct: 321 DP---VKVISGGPMMG------MTIPTLDIPTVK------GSSGLLSLTAAQAVLPQA-- 363

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                   SC +C  C E    
Sbjct: 364 -------SSCIRCGRCVEACPM 378


>gi|332799823|ref|YP_004461322.1| RnfABCDGE type electron transport complex subunit C
           [Tepidanaerobacter sp. Re1]
 gi|332697558|gb|AEE92015.1| electron transport complex, RnfABCDGE type, C subunit
           [Tepidanaerobacter sp. Re1]
          Length = 440

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 122/345 (35%), Gaps = 63/345 (18%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
             I +  +D I N ++ +G+ G GGAGF T +K S  P+   D    ++VNA E EP   
Sbjct: 114 KPIEQLTQDEIKNLIREAGITGLGGAGFPTQVKLSVPPEKNID---TIIVNAAECEPYIT 170

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  ++   P  +I G      A G   +FI +        +S+  A+            
Sbjct: 171 ADHRLLLERPEDVIFGLEAIMKATGVKKSFIGIEDNKPDAIDSISKAIAGKKG------- 223

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                   I V   A  Y  G E  L++++ G++         P +VG+      VNN  
Sbjct: 224 --------IEVVVLATKYPQGGEKQLIKAVTGREV---PSGGLPMDVGV-----IVNNAG 267

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           + A + + L+ G             G         +  P  +   +  +  ++IE+  G 
Sbjct: 268 TCAAIASALKTGMPLIERITTVTGSG---------IKEPKNLLIRIGTSLIDIIEQCGGF 318

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
                  L     GG  +    A                 +  GT+ ++V+++S      
Sbjct: 319 KGIPGKVL----MGGPMMGL--AQSELDVP----------AIKGTSGILVLEKSD----- 357

Query: 333 IWRLSVFYKHESCGQCTPCREGTG--WMMRVMERL-VKGIAQKRE 374
                  ++   C +C  C +      +   + +   +G+  + E
Sbjct: 358 ----VKLFEPSPCIRCARCVDACPINLLPTNLAKFTERGMWAEAE 398


>gi|32394530|gb|AAM93963.1| NADH dehydrogenase [Griffithsia japonica]
          Length = 170

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/114 (51%), Positives = 77/114 (67%), Gaps = 2/114 (1%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGA-GF 60
           L+D+DRIFTNLY      L  +M RG W     +++ GR WI++E+KA     R GA GF
Sbjct: 57  LSDKDRIFTNLYRDGDWRLKGAMKRGDWHMTKDLVQMGRSWILSEIKAVRPARRAGAPGF 116

Query: 61  STGMKWSFMPKVCSDRPH-YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIAS 113
            +G+K+SFMP    D    YLVVNADESEPGTCKDR+I+R +PH L+EGC++  
Sbjct: 117 PSGLKYSFMPDGSPDGRPNYLVVNADESEPGTCKDREILRSDPHKLVEGCLLVG 170


>gi|153872669|ref|ZP_02001494.1| Electron transport complex protein rnfC [Beggiatoa sp. PS]
 gi|152070866|gb|EDN68507.1| Electron transport complex protein rnfC [Beggiatoa sp. PS]
          Length = 446

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 120/345 (34%), Gaps = 60/345 (17%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
             +    +  IN V+ +G+ G GGA F + +K++        +  +LV+N  E EP    
Sbjct: 123 DWMALSIEEFINHVQKAGIVGMGGAAFPSHVKYAL---PDGMQIKHLVINGAECEPYLTN 179

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D  +M   P TL+ G  I    +GA  A I V         +LQ  +D+           
Sbjct: 180 DHRLMLERPDTLLRGIEIVRQKLGATQATIGVELNKTDAINTLQKHIDQQQIK------- 232

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
                 +I +      Y  G E  +++SL   +  P      P +VG+     TVNNV +
Sbjct: 233 ------NIRMVPLRVKYPQGAEKMMIKSLFNIEIPP---GQLPRDVGV-----TVNNVST 278

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           I  +      G          +  G         V  P  +   +     E++ + CGG+
Sbjct: 279 IVAIADYFETGMPLIERIVTVSGPG---------VEQPANLMVPLGTPAREVL-RFCGGL 328

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
           +   +   +VI GG  +  +P   +   I+            G++ ++            
Sbjct: 329 K---ETTRSVIMGGPMMG-MPIASLDVPIL-----------KGSSGILAFTDEETGKP-- 371

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRV--MERLVKGIAQKREID 376
                  K  SC  C  C E     +    + RL K        D
Sbjct: 372 -------KEYSCIHCGRCVEACPHFLNPSRLARLSKKRRYTEMTD 409


>gi|309389502|gb|ADO77382.1| electron transport complex, RnfABCDGE type, C subunit
           [Halanaerobium praevalens DSM 2228]
          Length = 441

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 118/325 (36%), Gaps = 62/325 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  +  I   ++ +G+ G GGA F T +K +       D   Y+++N  E EP    D  
Sbjct: 119 DLSQAEIRKIIREAGIVGMGGAMFPTHVKVTIPEDKNVD---YVILNGAECEPYLTVDHR 175

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M   P +++ G      A GA  A I +         S++ A +               
Sbjct: 176 VMVERPESIVFGLKALMKASGAPKAIIGIEDNKPEAIASMEDACESEN------------ 223

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+E+L G++         P +VG+      VNN  + A 
Sbjct: 224 ---NIKVQAVETKYPQGGEKMLIEALIGREV---PAGGLPLDVGV-----VVNNTSTSAA 272

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +R G   Y           +  SI+G  +N P  +   +     +L+E+  G    
Sbjct: 273 VADAIRDGKPLY----------ERSISITGRGINKPQNLIFRVGTNIGDLVEEAGG---- 318

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             DN   VI GG  +    A +               +  GT+ ++V+  S   ++A   
Sbjct: 319 LKDNAAKVITGGPMMGA--AQKNLNIP----------AVKGTSGILVLIESE--VEA--- 361

Query: 336 LSVFYKHESCGQCTPCREGTGWMMR 360
               Y+   C  C  C +     + 
Sbjct: 362 ----YEPSPCINCAKCVDACPMFLM 382


>gi|153931630|ref|YP_001382770.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936091|ref|YP_001386321.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A str. Hall]
 gi|152927674|gb|ABS33174.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932005|gb|ABS37504.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum A str. Hall]
          Length = 439

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 118 EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  E   ++EG  I          +I +        E+++ A +               
Sbjct: 175 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+ +++G++ Q       PA+ G       V N  ++  
Sbjct: 223 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G  V  P  +   +     EL+E  CGG + 
Sbjct: 272 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 320

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                + VI GG  +       M    +D   +K      G++ ++ +  +  ++     
Sbjct: 321 DP---VKVISGGPMMG------MTIPTLDIPTVK------GSSGLLSLAAAQAVLPQA-- 363

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                   SC +C  C E    
Sbjct: 364 -------SSCIRCGRCVEACPM 378


>gi|261880457|ref|ZP_06006884.1| electron transport complex [Prevotella bergensis DSM 17361]
 gi|270332796|gb|EFA43582.1| electron transport complex [Prevotella bergensis DSM 17361]
          Length = 449

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 114/321 (35%), Gaps = 59/321 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   + IIN +K +G+ G GGAGF T +K    P   ++    +++N  E EP    D  
Sbjct: 124 ELTSEDIINRLKVAGVTGMGGAGFPTFIKLMPPPGAKAEC---IIINGVECEPYITSDYR 180

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M      +I G  +   ++    A+I +     +    +                 K  
Sbjct: 181 LMMEHADEIIVGVQLLMKSVHVDKAYIGIEENKPKAIALMTE---------------KAA 225

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I V   A  Y  G E  L+ ++ G+  +    P  P NVG                
Sbjct: 226 SDSRIKVVPLAQKYPQGGEKQLVAAVIGR--EVPAPPAIPVNVG---------------A 268

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +P  +    + Y    +      +  S+SG  + +P      M  +F +LIE  CGG+  
Sbjct: 269 IPVNVGTTFAVYQAVMKNKPLFERYTSVSGKQIKHPGNFLVRMGTSFGQLIE-ACGGMPD 327

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
           G +    V+ GG  +    A       +            GT +V V+        A  +
Sbjct: 328 GDNK---VLAGGPMMG--KAVMNLDVPVCK----------GTNSVTVLTGD----DARRK 368

Query: 336 LSVFYKHESCGQC-TPCREGT 355
           +        CG+C T C  G 
Sbjct: 369 VIQPCIR--CGKCVTVCPMGL 387


>gi|227499954|ref|ZP_03930047.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus
           tetradius ATCC 35098]
 gi|227218063|gb|EEI83336.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus
           tetradius ATCC 35098]
          Length = 441

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 120/357 (33%), Gaps = 56/357 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + I+ ++K +G+ G GGA F   +K+    KV       ++VN  E EP    D  
Sbjct: 119 DLSAEEIVAKIKEAGIVGMGGAAFPAHIKYMPAKKVD-----TVIVNGAECEPYITCDDY 173

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M++ P  +++G   A  A+ A    + +     +  ES+  A+ E              
Sbjct: 174 LMKNRPQRILKGLTQAIKAVNADRGIVAIEDNKPKAYESMTKALAEFAKEN--------- 224

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + +I +      Y  G+E  +++    ++         P +VG       V+NV ++  
Sbjct: 225 SNFNIEIKQLETKYPQGDEKRMIDVTLNRQV---PSGGLPMDVG-----AIVSNVSTMHA 276

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +          Y     +     ++ +++G  V  P  +       F   IE+  G    
Sbjct: 277 I----------YEAIYMDKPLYERIVTVTGKSVKNPTNMLVRCGTEFGHCIEEAGGA--- 323

Query: 276 GWDNLLAVIPGGSSVPCL------PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
             D++  ++ GG            P  +    I+     +     +              
Sbjct: 324 --DDIAKLVNGGPMCGIAQPDLNRPVEKASNCILVLASDQAQPLEVSPCIRCARCVDACP 381

Query: 330 IKAI-WRLSVFYKHES-----------CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +  +   +  F   E            C +C  C         ++E +  G  Q R+
Sbjct: 382 VYLLPLYIHKFSLEERFEKAQELNIMDCIECGSCSFVCPSNRPLVEAIKFGKRQIRQ 438


>gi|255505205|ref|ZP_05344409.3| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella
           formatexigens DSM 14469]
 gi|255269627|gb|EET62832.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella
           formatexigens DSM 14469]
          Length = 672

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 106/322 (32%), Gaps = 67/322 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   D I+  V+ +G+ G GGAGF T +K              +++N  E EP    D  
Sbjct: 359 ELTPDEIVEIVREAGIVGMGGAGFPTSVKLK-----PPKPIDTILLNGCECEPYLTADHR 413

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++      +I G       + A    I +        E +QA   +C             
Sbjct: 414 VLLEFADDVIYGLKAIIKTVNAEKGLIVIEDNKPDAIELMQAKTADCD------------ 461

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L++ + G +  PR     PA+VG       V+N+ +   
Sbjct: 462 ---NIEVVVAKTKYPQGAEKMLIKRVMG-RQVPRGG--LPADVG-----CVVSNISTTKA 510

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +++G               ++ +++G  V  P      +     +LI  +CGG+ G
Sbjct: 511 ISDAIQKGMPLI----------ERVVTVTGERVKKPGNYIVKIGTNTKDLI-DYCGGLVG 559

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               +     GG  +  +                      G+  +I +D    +      
Sbjct: 560 DDITIK---AGGPMMGFVLKDTNVPI------------MKGSNGIIAIDTDYSV------ 598

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                  + C +C  C +    
Sbjct: 599 ------EQPCIKCGRCVDVCPM 614


>gi|322804644|emb|CBZ02196.1| electron transport complex protein RnfC [Clostridium botulinum
           H04402 065]
          Length = 403

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 117/322 (36%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 82  EMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 138

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  E   ++EG  I          +I +        E+++ A +               
Sbjct: 139 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIA------------ 186

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+ +++G++ Q       PA+ G       V N  ++  
Sbjct: 187 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 235

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G  V  P  +   +     EL+E  CGG + 
Sbjct: 236 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 284

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                + VI GG  +            M    L ++ +  G++ ++ +  +  ++     
Sbjct: 285 DP---VKVISGGPMMG-----------MTIPTL-DIPTVKGSSGLLSLTAAQAVLPQA-- 327

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                   SC +C  C E    
Sbjct: 328 -------SSCIRCGRCVEACPM 342


>gi|253682064|ref|ZP_04862861.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum D str. 1873]
 gi|253561776|gb|EES91228.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           botulinum D str. 1873]
          Length = 439

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 116/326 (35%), Gaps = 62/326 (19%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
               E  ++ I+  VK +G+ G GGA F T +K +  P    D    +++N  E EP   
Sbjct: 114 KDYTEMTKEEIVELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIILNGAECEPYLT 170

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  +M  E + ++EG  I          +I +        E+L+ A  +          
Sbjct: 171 CDHRLMLEETNMIVEGLKIILHMHPNAKGYIGIEDNKKNAIEALRNATKDI--------- 221

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                  +I V      Y  G E  L+ S+  K+  P  K   PA+ G       V NV 
Sbjct: 222 ------PNIEVKALKTKYPQGAEKQLIYSVM-KREVPSGK--LPADAG-----CIVQNVN 267

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCG 271
           ++  V   +  G              +++ +++G  V  P  +   + +++ EL+E   G
Sbjct: 268 TVREVYNAVVNG----------RPTISRVVTVTGEAVKNPKNLRVRLGMSYRELVEACDG 317

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                 ++ + VI GG  +    A       +            G++ ++ +     ++ 
Sbjct: 318 ----FKEDPVKVISGGPMMGM--AVSTLDVPV----------IKGSSGILCLTEKQAVLP 361

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGW 357
                       SC +C  C +    
Sbjct: 362 ---------DESSCIRCGRCVKACPM 378


>gi|51947515|gb|AAU14242.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus
           ovalis]
          Length = 110

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/110 (64%), Positives = 84/110 (76%)

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL+S+SGH+N PCTVE+ MSI+  ELIE+H GG+RGGWDNLL VIPGGSS P +      
Sbjct: 1   KLYSLSGHINNPCTVEDEMSISVRELIERHGGGVRGGWDNLLGVIPGGSSTPIISKELCE 60

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
            A+MD+D L E GS  GTA VIV+D+STD+I AI RLS FY  ESCGQCT
Sbjct: 61  TALMDFDSLIEAGSAFGTAGVIVLDKSTDVIDAILRLSKFYLRESCGQCT 110


>gi|229815898|ref|ZP_04446222.1| hypothetical protein COLINT_02954 [Collinsella intestinalis DSM
           13280]
 gi|229808593|gb|EEP44371.1| hypothetical protein COLINT_02954 [Collinsella intestinalis DSM
           13280]
          Length = 447

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 108/357 (30%), Gaps = 55/357 (15%)

Query: 31  NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90
            +       ++  I  V+ SG+ G GGA F T   W  M         +LVVNA E EP 
Sbjct: 109 ALKPPTYSNKEEFIACVRDSGMVGLGGASFPT---WFKMRAPEGKSFEFLVVNAMECEPY 165

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
              D   M      +I+G      A+    A I V          L+  V E        
Sbjct: 166 ITSDYRQMMEHSERVIDGVFRTIEALEIPAAVIGVEDNKPEAILELKRVVKE-------- 217

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
                G +  I V      Y  G E  L+++  G+          P +VG       V N
Sbjct: 218 ----KGREDRIEVMEIPTKYPAGGEKVLIKATTGRDV---PAGGLPIDVG-----CLVVN 265

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKH 269
           V +I+ V    R G               K  +++G  +  P      + ++  ++IE  
Sbjct: 266 VTTISRVEQYFRYGMPLTC----------KTVTVTGDCIANPGNYRIPLGMSVRDVIEAT 315

Query: 270 CGGIRGGWDNLLAVIPGGSSVP-CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            G ++        +I GG  +   +          +   +    + +       +     
Sbjct: 316 GGMVKEP----KKIIMGGPMMGRTITNIDCPILKANNAIVALHDAAVLPDETACIRCGRC 371

Query: 329 IIKAIWRLSVFYKHE----------------SCGQCTPCREGTGWMMRVMERLVKGI 369
           +      L  F                    +C +C  C        R+   + +G 
Sbjct: 372 VRACPLALEPFALDSASRSHDVVALDELAVMNCMECGSCAYVCPAHRRITASIREGK 428


>gi|281178701|dbj|BAI55031.1| putative transport protein [Escherichia coli SE15]
          Length = 806

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|325299904|ref|YP_004259821.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324319457|gb|ADY37348.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 445

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 115/330 (34%), Gaps = 61/330 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + K      + I+ ++K +G+ G GGA F T +K +  P   ++    +++NA E EP  
Sbjct: 114 LVKECNLTPEEIVTKIKNAGVVGMGGACFPTHVKLTPPPGCKAEC---VIINAVECEPYL 170

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M  +P  ++ G  I   A   + A+I +          L        A+G  G 
Sbjct: 171 TADHRLMLEKPDEILVGVSILMKAAKVNQAYIGIENNKPDAIRLLTE-----KAAGYPG- 224

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I V      Y  G E  L++++ G+  Q    P  P NVG       V NV
Sbjct: 225 ---------IEVVPLKVKYPQGGEKQLIDAIIGR--QVPAPPAIPINVG-----AIVQNV 268

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            ++  V   ++          +      ++ +++G  +  P      M     +LIE   
Sbjct: 269 GTVYAVYEAVQ----------KNKPLFERIVTVTGKSLKNPSNFLTRMGTPMSQLIEAAG 318

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           G           VI GG  +    A       +            G++ V++M+      
Sbjct: 319 GLPEDTGK----VIGGGPMMG--KALMNIEVPICK----------GSSGVLIMND----- 357

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           K   R       + C +C  C       + 
Sbjct: 358 KEARR----GAPQPCIRCAKCVSVCPMGLE 383


>gi|260437062|ref|ZP_05790878.1| Na(+)-translocating NADH-quinone reductase, A subunit [Butyrivibrio
           crossotus DSM 2876]
 gi|292810371|gb|EFF69576.1| Na(+)-translocating NADH-quinone reductase, A subunit [Butyrivibrio
           crossotus DSM 2876]
          Length = 439

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 120/344 (34%), Gaps = 63/344 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  +D II  ++ +G+ G GGAGF T +K S      +D    ++VN  E EP    D  
Sbjct: 118 ELSKDEIIKIIEEAGIVGMGGAGFPTNVKLS---PKNADIIDSIIVNGAECEPYLTSDYR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M  +   L++G  I          +  +        E+L  A +               
Sbjct: 175 RMVEQTDKLVKGLKIVLKIFPDAKGYFGIEDNKPEAIEALLKATEN-------------- 220

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            +  I V      Y  G E +++ ++ G+K   ++    PA+VG       V+NV++I  
Sbjct: 221 -EDRIEVVPLKTKYPQGGERSMIYAVTGRKINSKM---LPADVG-----CIVHNVDTIYA 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +I+G  V+ P   +  +   F ELI+   G    
Sbjct: 272 IYNAVYNG----------KPLIERIVTITGDAVSTPKNFQVRIGTPFRELIDAAGGFTTE 321

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  +I GG  +    +       +            G+++++   +          
Sbjct: 322 PEK----IISGGPMMGF--SFFNIDVPV----------VKGSSSLLAFIKDD-------- 357

Query: 336 LSVFYKHESCGQCTPCREGTGW-MMRVMERLVKGIAQKREIDLL 378
                +  +C +C  C       ++ +    + G  +  E   L
Sbjct: 358 -VSHEEPSACIRCGRCAAACPEHLLPMKLAALAGQNEPEEFKKL 400


>gi|301026785|ref|ZP_07190189.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 69-1]
 gi|300395323|gb|EFJ78861.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 69-1]
          Length = 804

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|324006984|gb|EGB76203.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 57-2]
          Length = 808

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|153809956|ref|ZP_01962624.1| hypothetical protein RUMOBE_00337 [Ruminococcus obeum ATCC 29174]
 gi|149834134|gb|EDM89214.1| hypothetical protein RUMOBE_00337 [Ruminococcus obeum ATCC 29174]
          Length = 583

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 107/322 (33%), Gaps = 67/322 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   D II+ VK +G+ G GGAGF T      +    +     +++N  E EP    D  
Sbjct: 270 ELTPDEIIDIVKEAGIVGMGGAGFPT-----CVKLKPAKPVDTILLNGCECEPYLTADHK 324

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++      +I G        GA    I +        E ++  V +              
Sbjct: 325 VLLEFADDIIFGLKAILKTTGAEKGIIVIEDNKPDAIELMKEKVADIG------------ 372

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              ++ V      Y  G E  L++ + G+K         PA+VG+      V+N+ ++  
Sbjct: 373 ---NMEVFVARTKYPQGAEKTLIKRVMGRKV---PSGGLPADVGV-----IVDNISTVKA 421

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +++G               ++ +I+G  +  P      +  +  +LI  +CGG   
Sbjct: 422 ISDAIQKGMPLI----------ERVTTITGEKIKNPGNFIIKIGTSVKDLI-DYCGGFTD 470

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               +     GG  +            M            G+  +I +D           
Sbjct: 471 DDVLVKM---GGPMMGF--PLNTLDVPM----------MKGSNGIIAID----------- 504

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
            +   K + C +C  C +    
Sbjct: 505 -TDETKEQPCIKCGRCVDVCPM 525


>gi|218699803|ref|YP_002407432.1| electron transport complex protein RnfC [Escherichia coli IAI39]
 gi|226735439|sp|B7NU04|RNFC_ECO7I RecName: Full=Electron transport complex protein rnfC
 gi|218369789|emb|CAR17560.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli IAI39]
          Length = 740

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHKFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|332653503|ref|ZP_08419248.1| electron transport complex, RnfABCDGE type, C subunit
           [Ruminococcaceae bacterium D16]
 gi|332518649|gb|EGJ48252.1| electron transport complex, RnfABCDGE type, C subunit
           [Ruminococcaceae bacterium D16]
          Length = 445

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 109/339 (32%), Gaps = 67/339 (19%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
           + V+ASGL G GGAGF T +K   +     D    L++N  E EP    D      + H 
Sbjct: 134 DAVRASGLVGLGGAGFPTAVK---LAPKNLDEIDTLLINGAECEPYITSDNRCFIEDTHF 190

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164
           ++ G       +      I +          ++AA+D                   I V 
Sbjct: 191 ILSGIKAVMKYLNIPKCIIGIEANKPEAIAKMKAAIDVAG----------------IEVK 234

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
                Y  G E  L+E+  G++      P  P++VG+      V NV S A V   L  G
Sbjct: 235 ELPCRYPQGAEKVLIENCTGREV---PFPGLPSDVGV-----IVMNVTSTAFVGKYLETG 286

Query: 225 ASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
                         TK  ++ G  V  P  VE  +     EL +   G        L   
Sbjct: 287 MPLT----------TKRLTVDGDIVKEPKNVEVIIGTPIQELFDFCGGLTEEPGKVLYGG 336

Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
              G+ V  L    ++                   AV+   +    +             
Sbjct: 337 PMMGTCVASLDQPILKN----------------NNAVLAFSKKFAHMPKATNCIH----- 375

Query: 344 SCGQCT-PCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
            CG+C   C  G      +++   KG     +++ L  +
Sbjct: 376 -CGRCVNACPLGLA-AKDIVKAYEKG-----DVEQLQAL 407


>gi|163816427|ref|ZP_02207791.1| hypothetical protein COPEUT_02616 [Coprococcus eutactus ATCC 27759]
 gi|158448127|gb|EDP25122.1| hypothetical protein COPEUT_02616 [Coprococcus eutactus ATCC 27759]
          Length = 441

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 109/328 (33%), Gaps = 60/328 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
            NV  +    R+ +   +K +G+ G GGAGF   +K S   +   D   Y++VN  E EP
Sbjct: 112 ANVKDLSSLYREDVKEIIKEAGIVGMGGAGFPANVKLSPKNEDAID---YIIVNGAECEP 168

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D   M  EP  LI G  I           I +          L   V +       
Sbjct: 169 YLTSDYRRMLEEPDKLILGLEICINLFDHAKGIIAIEDNKPEAIAILSDKVKD------- 221

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                   +  I VH     Y  G E  L+ +  G+    ++    PA+ G       V+
Sbjct: 222 --------NDKIEVHVMKTKYPQGAERQLIYANTGRYVNSKM---LPADAG-----CIVH 265

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV++I  +   +  G   YS          ++ +I+G  +  PC +         ELIE 
Sbjct: 266 NVDTIVSIYEAVVEGRPLYS----------RIVTITGDAIENPCNLMVRTGTNCQELIEA 315

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                            GG     +P   + G  M    L  +          ++  + D
Sbjct: 316 A----------------GGFKDGVVPEKVISGGPMMGKALFSLDVPATKGVSALLCMTHD 359

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +  +       +  +C +C  C +   
Sbjct: 360 EVAEL-------EPSNCIRCGRCVDVCP 380


>gi|323187054|gb|EFZ72370.1| electron transport complex protein rnfC [Escherichia coli RN587/1]
          Length = 773

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|160895200|ref|ZP_02075972.1| hypothetical protein CLOL250_02759 [Clostridium sp. L2-50]
 gi|156863079|gb|EDO56510.1| hypothetical protein CLOL250_02759 [Clostridium sp. L2-50]
          Length = 443

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/328 (20%), Positives = 109/328 (33%), Gaps = 60/328 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +NV  +    R+ I + +K +G+ G GGAGF + +K S       D   Y++VN  E EP
Sbjct: 114 ENVRDLSTLYREDIKDMIKEAGIVGMGGAGFPSHVKLS---PKNEDDIEYIIVNGAECEP 170

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D   M  E   LI G  I           I +                    S  L
Sbjct: 171 YLTSDYRRMLEETEKLILGLQICVNLFDKAKGIIAIEDNKPEAI---------AKISEHL 221

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
             N K      I V      Y  G E  L+ +  G+    ++    PA+ G       V+
Sbjct: 222 ADNDK------IEVKVLKTKYPQGAERQLIYATTGRYVNSKM---LPADAG-----CIVH 267

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           N ++I  +   +  G   Y          T++ +++G  +  PC +      +  E+IE 
Sbjct: 268 NTDTIVSIYEAVIEGKPLY----------TRIVTVTGDAIVNPCNLLVHNGTSCREIIEA 317

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                            GG     LP   + G  M    + +    L   AV  +     
Sbjct: 318 A----------------GGFKDGKLPEKIIAGGPM----MGKAMFSLDVPAVKGLSALLC 357

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG 356
           +          ++  +C +C  C +   
Sbjct: 358 M---THDEVQDWEPSACIRCGRCVDVCP 382


>gi|306813407|ref|ZP_07447597.1| electron transport complex protein RnfC [Escherichia coli NC101]
 gi|305853152|gb|EFM53592.1| electron transport complex protein RnfC [Escherichia coli NC101]
          Length = 740

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|187777028|ref|ZP_02993501.1| hypothetical protein CLOSPO_00573 [Clostridium sporogenes ATCC
           15579]
 gi|187773956|gb|EDU37758.1| hypothetical protein CLOSPO_00573 [Clostridium sporogenes ATCC
           15579]
          Length = 447

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 109/322 (33%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ I+  ++ +G+ G GGA F T +K S  P    D    ++VNA E EP    D  
Sbjct: 126 EMTKEEIMKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDS---IIVNAAECEPYLTCDHR 182

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  E   ++EG  I          +I +        E+++ A                 
Sbjct: 183 LMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASQGIA------------ 230

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+ +++G++ Q       PA+ G       V N  ++  
Sbjct: 231 ---NIEVKALKTKYPQGAEKQLIYAIKGREVQ---SGKLPADAG-----CVVQNTATVRE 279

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G  V  P  +   +     EL+E  CGG + 
Sbjct: 280 IYNAVVLG----------RPLIERIITVTGEAVKEPKNIRMKLGTNLRELVE-FCGGYKE 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                + VI GG  +                     G    T A  V+ ++         
Sbjct: 329 DP---VKVISGGPMMGMTIPT--LDIPTVKGS---SGLLSLTGAQAVLPQA--------- 371

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                   SC +C  C E    
Sbjct: 372 -------SSCIRCGRCVEACPM 386


>gi|220932271|ref|YP_002509179.1| electron transport complex, RnfABCDGE type, C subunit
           [Halothermothrix orenii H 168]
 gi|219993581|gb|ACL70184.1| electron transport complex, RnfABCDGE type, C subunit
           [Halothermothrix orenii H 168]
          Length = 441

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 126/370 (34%), Gaps = 66/370 (17%)

Query: 20  LSDSMS-RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           L +S+  RG   ++        + I N ++ +G+ G GGA F T +K +       D   
Sbjct: 107 LDESIKPRGELSDL------TPEDIKNIIREAGIVGLGGATFPTHVKLNVPEGKEIDH-- 158

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            +++N  E EP    D  IM      ++ G      A G     I +        ++++ 
Sbjct: 159 -VILNGAECEPYLTVDHRIMVERSEDVVFGLRALMKAAGVENGLIGIEDNKPDAIQAMKK 217

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
            V+                +  I V      Y  G E  L+++L  ++         P +
Sbjct: 218 VVEN---------------EPGIEVKVLETKYPQGGEKMLIKALLDREVPV---GGLPLD 259

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           VG+      VNNV +   V   +++G               +  +I+G  V  P  +   
Sbjct: 260 VGV-----IVNNVSTAVAVTDAIKKGMPLI----------ERPVTITGRGVKNPLNLVFR 304

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCL-------PAGQMRGAIMDYDGLKE 310
           +    ++LIE+  G +  G   ++     G S P          +G +     + +    
Sbjct: 305 VGTPIEDLIEQAGGMVSPGGKVIVGGPMMGISQPHTGIPSNKGTSGLLILPPEEIEDFNP 364

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-----------SCGQCTPCREGTGWMM 359
                    V     S  ++    +LS F KHE           +C +C  C        
Sbjct: 365 RPCIKCARCV----DSCPMMLMPIQLSNFAKHEMYDELEKYNVLNCIECGTCSYVCPARR 420

Query: 360 RVMERLVKGI 369
            ++E +  G 
Sbjct: 421 PLVEYIRLGK 430


>gi|241865242|gb|ACS68699.1| NADH dehydrogenase [Sonneratia alba]
 gi|241865475|gb|ACS68770.1| NADH dehydrogenase [Sonneratia alba]
          Length = 107

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/103 (67%), Positives = 82/103 (79%)

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           LLAVIPGGSSVP LP  +    +MDYD LK + SGLGTAAVIVMD+STD++ AI RLS F
Sbjct: 5   LLAVIPGGSSVPLLPKHKCDNVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYF 64

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           YKHESCGQCTPCREGTGW+  +ME+L  G A+  EID+L EV+
Sbjct: 65  YKHESCGQCTPCREGTGWLWMIMEKLKVGNAKLEEIDMLQEVT 107


>gi|225026272|ref|ZP_03715464.1| hypothetical protein EUBHAL_00513 [Eubacterium hallii DSM 3353]
 gi|224956380|gb|EEG37589.1| hypothetical protein EUBHAL_00513 [Eubacterium hallii DSM 3353]
          Length = 442

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 121/368 (32%), Gaps = 76/368 (20%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ +  SG+ G GGAGF T +K +   +       Y+++N  E EP    D+ +M  E 
Sbjct: 5   LIDIIAKSGIVGAGGAGFPTHVKMNAKAE-------YVIINGAECEPLLRVDQQLMAVET 57

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +++   +   A+GA    I ++G +     S            LLG          I 
Sbjct: 58  KKILDALKLCMEAVGADKGVIALKGHYEAAINSFNQ---------LLGEYEG------IS 102

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +H     Y  G+E   +  + G +  P  +   P   G+      V+NVE++  +     
Sbjct: 103 LHLLPNFYPAGDEQITVYEVTG-RIVP--EGGIPLQCGV-----IVSNVETMLNIYNAYF 154

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                   +           + +G V    T++  + +T  E ++   G    G      
Sbjct: 155 EDKPVTDSY----------VTFAGEVKNHITLKLPLGMTVKEALDLAGGVTVNGP---YV 201

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI---IKAIWRLSVF 339
           VI GG  +          + +             T  +IV+     +   +K      + 
Sbjct: 202 VINGGPMMG---KHVALDSKITKT----------TKGLIVLPEDHPLIQDVKLPIPKMLH 248

Query: 340 YKHESCGQCTPCREGTGWMMRVMERLVKGI----------AQKREIDLLYEVSKNIEGRT 389
               +C  C+ C E       +  R+                  +  ++  +       +
Sbjct: 249 MAKAACCHCSMCSEVCPR-HLIGHRIEPNKTIRFASYGSLCDGSDTPMIAFLC------S 301

Query: 390 ICALGDAA 397
            C L   A
Sbjct: 302 ECRLCQYA 309


>gi|254302139|ref|ZP_04969497.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148322331|gb|EDK87581.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 435

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/384 (18%), Positives = 137/384 (35%), Gaps = 71/384 (18%)

Query: 29  WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI    E  +  +++ ++  G+ G GGA F T +K +  P    D    L++N  
Sbjct: 106 WAELSKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P +++EG  I    +     ++ +        E+++ A +    
Sbjct: 163 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVSDVYVGIEDNKPEAIETMRKATEGT-- 220

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                         DI +      Y  G E  L++S+  ++         P+ VG+    
Sbjct: 221 --------------DIKIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 259

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   +  G               K+ ++SG  +  P  V+ ++   F  
Sbjct: 260 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNVKVAIGTPFSY 308

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++  HCG      + +  ++ GG  +    A     A +            GT+ ++ + 
Sbjct: 309 IL-DHCG---VNREEMARLVMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 352

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
                          YK ++C  C+ C       +   + +RL      +     ++ + 
Sbjct: 353 NEE---------MRPYKTKACISCSKCVSACPMGLAPLMFDRLAAAKEYEEM--AVHNLM 401

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 402 DCIECGS-CAYICPANRPLAEAIK 424


>gi|168186752|ref|ZP_02621387.1| electron transport complex protein RnfC [Clostridium botulinum C
           str. Eklund]
 gi|169295307|gb|EDS77440.1| electron transport complex protein RnfC [Clostridium botulinum C
           str. Eklund]
          Length = 439

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 115/326 (35%), Gaps = 62/326 (19%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
                  ++ II  VK +G+ G GGA F T +K +  P    D    ++VN  E EP   
Sbjct: 114 KDYKTMSKEEIIELVKEAGVVGMGGATFPTNVKLAPPPDKNID---AIIVNGAECEPYLT 170

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  +M  E + ++EG  +          +I +        E+L+ A  +          
Sbjct: 171 CDHRLMLEETNMIVEGLKVILHIHPQAKGYIGIEDNKKNAIEALKEATKDI--------- 221

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                  +I V      Y  G E  L+ S+  K+  P  K   PA+ G       V N+ 
Sbjct: 222 ------PNIEVKALKTKYPQGAEKQLIYSVM-KREVPSGK--LPADAG-----CIVQNIN 267

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCG 271
           ++  V   +  G              +++ +I+G  +  P  +   + +++ EL+E   G
Sbjct: 268 TVREVYNAVVNG----------RPTISRVVTITGEAIKNPKNLRVRLGMSYRELVEACEG 317

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                 +  + VI GG  +    A       +            G++ ++ +     ++ 
Sbjct: 318 ----FKEEAVKVISGGPMMGM--AISTLDVPV----------IKGSSGILCLTEKQAVLP 361

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGW 357
                    +  SC +C  C E    
Sbjct: 362 ---------EESSCIRCGRCVEACPM 378


>gi|323978231|gb|EGB73317.1| electron transporter [Escherichia coli TW10509]
          Length = 740

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|257066815|ref|YP_003153071.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           prevotii DSM 20548]
 gi|256798695|gb|ACV29350.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           prevotii DSM 20548]
          Length = 439

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 109/317 (34%), Gaps = 59/317 (18%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I+ ++K +G+ G GGA F   +K+     + +     ++VN  E EP    D  +M++
Sbjct: 121 EEIVAKIKEAGIVGMGGAAFPAHIKY-----LPAKPVDTVIVNGAECEPYITCDDYLMKN 175

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            P  +++    A  A+GA    I +     +  +++ +A+++                 D
Sbjct: 176 RPERILKALNQAMKAVGAKKGIIAIEDNKPKAFDTMVSALEKFAKEN---------SSFD 226

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +      Y  G+E  +++    ++         P +VG       V+NV ++  +   
Sbjct: 227 IEIKKLQTKYPQGDEKRIIDVCLNRQV---PSGGLPMDVG-----AIVSNVSTMNAI--- 275

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
                  Y     +     ++ +++G  V  P  +       F  LIE+  G      D+
Sbjct: 276 -------YEAIYMDKPLYERIVTVTGKSVKNPTNMLVRCGTEFGYLIEEAGGA-----DD 323

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
           +  ++ GG       A        +                        ++      +  
Sbjct: 324 IAKLVNGGPMCGI--AQPDLTRPTEKAS-------------------NCVLVLASDEAEP 362

Query: 340 YKHESCGQCTPCREGTG 356
            +   C +C  C +   
Sbjct: 363 LEVSPCIRCGRCVDVCP 379


>gi|222033388|emb|CAP76129.1| electron transport complex protein rnfC [Escherichia coli LF82]
 gi|312946229|gb|ADR27056.1| electron transport complex protein RnfC [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 775

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|313672554|ref|YP_004050665.1| electron transport complex, rnfabcdge type, c subunit
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939310|gb|ADR18502.1| electron transport complex, RnfABCDGE type, C subunit
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 433

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 116/339 (34%), Gaps = 66/339 (19%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D   + + A+G+ G GGA F + +K S   KV       L+VN  E EP    D  +M  
Sbjct: 117 DKFQDIISAAGIVGLGGATFPSHVKLSPPKKVD-----TLIVNGAECEPFLTCDHRLMIE 171

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               ++ G ++    +      + +    +   +                   +  Y+ +
Sbjct: 172 NTEEILLGALLVKEKLSIERLIVGIEDNKLDAYKEF--------------GKYQTKYNFE 217

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           +  H     Y  G E  L+ +  G +  P  K   P +VG+      V+NV +   +   
Sbjct: 218 L--HLLHTKYPQGGEKQLIFATTG-RIVPEGK--LPLDVGV-----IVHNVGTFKAIYEA 267

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
              G   +           ++ +++G V  P  +   +     +LI   CGG  G     
Sbjct: 268 WTFGKPLF----------ERVVTVTGAVKEPKNILVKIGTPISKLI-DFCGGFVGKP--- 313

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
             +I GG  +    A                 +  GT+ VIV+    D+           
Sbjct: 314 KKIIIGGPMMGF--AASSLDTP----------TTKGTSGVIVLRE-DDMPDM-------- 352

Query: 341 KHESCGQCTPCREGTGWMM--RVMERLVKGIAQKREIDL 377
           K  +C +C  C E     +   +ME+       ++ ID 
Sbjct: 353 KKSNCIRCGRCVEACPMGLVPAIMEQFSLNEMYEKLIDW 391


>gi|218705130|ref|YP_002412649.1| electron transport complex protein RnfC [Escherichia coli UMN026]
 gi|300901564|ref|ZP_07119633.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 198-1]
 gi|226735442|sp|B7NB83|RNFC_ECOLU RecName: Full=Electron transport complex protein rnfC
 gi|218432227|emb|CAR13117.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli UMN026]
 gi|300355031|gb|EFJ70901.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 198-1]
          Length = 740

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDITLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|253580107|ref|ZP_04857374.1| electron transport complex [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848626|gb|EES76589.1| electron transport complex [Ruminococcus sp. 5_1_39BFAA]
          Length = 444

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 102/332 (30%), Gaps = 71/332 (21%)

Query: 26  RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
            G  DN+        D II+ ++ +G+ G GGAGF T      +    +     +++N  
Sbjct: 126 HGDLDNL------TPDEIIDIIREAGIVGMGGAGFPT-----CVKLKPAKPVDTILLNGC 174

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  ++      +I G        GA    I +        E +Q  V +   
Sbjct: 175 ECEPLLTADHRVLLEYADDIIFGLKAVLKTTGAEKGIIVIEDNKPDAIELMQKKVADIG- 233

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                         ++ V      Y  G E  L++ + G +  P      PA+VG+    
Sbjct: 234 --------------NMEVFVARTKYPQGAEKTLIKRVMG-RIVP--SGGLPADVGV---- 272

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
             V+N+ ++  +   ++ G                       +  P      +  +  EL
Sbjct: 273 -VVDNISTVKAISDAIQTGMPLVERVAT---------VTGEKIKNPGNFVIKIGTSVREL 322

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           I  +CGG       +     GG  +            M            G+  +I ++ 
Sbjct: 323 I-DYCGGFTDDDVLVKM---GGPMMGF--PLNTLDVPM----------MKGSNGIIAVEP 366

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                          K + C +C  C +    
Sbjct: 367 DE------------TKEQPCIKCGRCVDVCPM 386


>gi|215486806|ref|YP_002329237.1| electron transport complex protein RnfC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312966607|ref|ZP_07780827.1| electron transport complex protein rnfC [Escherichia coli 2362-75]
 gi|254807929|sp|B7URX0|RNFC_ECO27 RecName: Full=Electron transport complex protein rnfC
 gi|215264878|emb|CAS09264.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312288717|gb|EFR16617.1| electron transport complex protein rnfC [Escherichia coli 2362-75]
          Length = 741

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|26247876|ref|NP_753916.1| electron transport complex protein RnfC [Escherichia coli CFT073]
 gi|81748475|sp|Q8FH95|RNFC_ECOL6 RecName: Full=Electron transport complex protein rnfC
 gi|26108279|gb|AAN80481.1|AE016761_56 Electron transport complex protein rnfC [Escherichia coli CFT073]
 gi|307553652|gb|ADN46427.1| electron transport complex protein RnfC [Escherichia coli ABU
           83972]
          Length = 742

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|189460039|ref|ZP_03008824.1| hypothetical protein BACCOP_00675 [Bacteroides coprocola DSM 17136]
 gi|189433200|gb|EDV02185.1| hypothetical protein BACCOP_00675 [Bacteroides coprocola DSM 17136]
          Length = 445

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 130/397 (32%), Gaps = 72/397 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++G    +S+ R     + K      + I+ ++K +G+ G GGA F T +K +  P   +
Sbjct: 99  VEGDEWEESIDRS--SELVKECNLTPEEIVAKIKNAGVVGMGGACFPTHVKLTPPPGCKA 156

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D    +++NA E EP    D  +M  +   ++ G  I   A      +I +        +
Sbjct: 157 DC---VIINAVECEPYLTADHRLMLEKADEILVGVQILMKAAKVTKGYIGIENNKPDAIK 213

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +        A+   G          I +      Y  G E  L++++ G+  Q    P 
Sbjct: 214 LMTE-----KAAAYPG----------IEIVPLKVKYPQGGEKQLIDAVIGR--QVPAPPA 256

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            P NVG       V NV +   V   ++          +      ++ +++G  +  P  
Sbjct: 257 IPINVG-----AVVQNVGTAYAVYEAVQ----------KNKPLFERIVTVTGKSLKNPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               M     +LIE   G           VI GG  +    A       +          
Sbjct: 302 FLTRMGTPMSQLIEAAGGLPEDTGK----VIGGGPMMG--KALANTEVPICK-------- 347

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
             G++ V++M+                + + C +C  C       +     L+   +   
Sbjct: 348 --GSSGVLIMNDKEACR---------AEPQPCIRCAKCVSACPMGLEPF--LLATCSAHG 394

Query: 374 EIDLLYEVSKNIEGRTI-CALGDAAA---WPIQGLIK 406
           + + +      +    I C           P+   I+
Sbjct: 395 DWERVE---HEMIMSCIECGSCQFTCPSHRPMLDYIR 428


>gi|110641752|ref|YP_669482.1| electron transport complex protein RnfC [Escherichia coli 536]
 gi|191173436|ref|ZP_03034964.1| electron transport complex protein RnfC [Escherichia coli F11]
 gi|123049190|sp|Q0THJ8|RNFC_ECOL5 RecName: Full=Electron transport complex protein rnfC
 gi|110343344|gb|ABG69581.1| electron transport complex protein RnfC [Escherichia coli 536]
 gi|190906278|gb|EDV65889.1| electron transport complex protein RnfC [Escherichia coli F11]
          Length = 774

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|118442918|ref|YP_877660.1| rnfC/nqrF [Clostridium novyi NT]
 gi|118133374|gb|ABK60418.1| rnfC/nqrF [Clostridium novyi NT]
          Length = 439

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 117/326 (35%), Gaps = 62/326 (19%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
                  ++ II  VK +G+ G GGA F T +K +  P    D    ++VN  E EP   
Sbjct: 114 KDYKTMSKEEIIELVKEAGVVGMGGATFPTNVKLAPPPDKKID---AIIVNGAECEPYLT 170

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  +M  E + ++EG  I          +I V        E+L+ A  +          
Sbjct: 171 CDHRLMLEETNMIVEGLKIILQIHPQAKGYIGVEDNKKNAIEALKQATKDI--------- 221

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                  +I V      Y  G E  L+ S+  K+  P  K   PA+ G       V N+ 
Sbjct: 222 ------PNIEVKALKTKYPQGAEKQLIYSVM-KREVPSGK--LPADAG-----CIVQNIN 267

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCG 271
           ++  V   +  G              +++ +++G  +  P  +   + +++ EL++   G
Sbjct: 268 TVREVYNAVVNG----------RPTISRVVTVTGEAIKNPKNLRVRLGMSYKELVDACEG 317

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                 +  + VI GG  +            M    L E+    G++ ++ +     ++ 
Sbjct: 318 ----FKEEAVKVISGGPMMG-----------MAVSTL-EVPVIKGSSGILCLTEKQAVLP 361

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGW 357
                    +  SC +C  C E    
Sbjct: 362 ---------EESSCIRCGRCVEACPM 378


>gi|239617294|ref|YP_002940616.1| electron transport complex, RnfABCDGE type, C subunit [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506125|gb|ACR79612.1| electron transport complex, RnfABCDGE type, C subunit [Kosmotoga
           olearia TBF 19.5.1]
          Length = 440

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 111/338 (32%), Gaps = 67/338 (19%)

Query: 27  GHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
             W+ ++      E  RD II  +K +G+ G GGA F T +K +       D    L++N
Sbjct: 106 DDWELLEPAKSYEEFSRDEIIERIKEAGIVGLGGATFPTHVKLNPPKDKKID---VLIIN 162

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
             E EP    D  +M      +I G      A+G   A I +     +    ++ A    
Sbjct: 163 GAECEPYLTVDYRLMLEMSEKIIRGIRALMKALGVEKAIIGIEDNKPKAIRRMKEA---- 218

Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
                    +  G    I V      Y  G E  L+ +L  K+  P      P +VG+  
Sbjct: 219 ---------AGDG----IEVRVLKTKYPQGAEKQLIYALT-KRIVP--SGGLPMDVGV-- 260

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITF 262
               V NV +   V   +  G               +  +++G  V  P  +   +    
Sbjct: 261 ---VVQNVGTAFAVYEAIELG----------KPLIERAVTVTGEGVKKPINIVARIGTLA 307

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            ELIE   G        +      G +VP +         +            GT+ + V
Sbjct: 308 SELIELAGGMEANVDRVVFGGPMMGIAVPKI------DIPV----------MKGTSGITV 351

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           M +     + +     F     C +C  C +     ++
Sbjct: 352 MTK-----EVVGERESF----PCIRCGGCVKACPMYLQ 380


>gi|289577375|ref|YP_003476002.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter italicus Ab9]
 gi|297543662|ref|YP_003675964.1| RnfABCDGE type electron transport complex subunit C
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527088|gb|ADD01440.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter italicus Ab9]
 gi|296841437|gb|ADH59953.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 444

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 103/320 (32%), Gaps = 59/320 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     II  ++ +G+ G GGAGF T +K S       D    ++VN  E EP    D  
Sbjct: 121 DLSPKEIIEIIREAGITGMGGAGFPTHVKLSPPSDKKID---TILVNGAECEPYLTTDHR 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M   P  ++ G      A+G     I V         +L+ A                 
Sbjct: 178 LMVEYPEKIVFGLKAIMKAVGVERGIIGVEKNKPDAILALREA---------------SK 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + +I +      Y  G+E  L+ ++  ++  P      P +VG+      V N  +   
Sbjct: 223 NEKNIRIATLKVKYPQGDEKRLINAIL-RRIVP--SGGLPMDVGV-----IVVNAATTKA 274

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   +  G   Y        RG         +  P  +   +     +LIE+  G   G 
Sbjct: 275 VADAILEGKPLYERVTTITGRG---------IKEPKNLLVKIGTPLKDLIEQCGGFTEGS 325

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 +I GG  +    A       +            GT  ++++ +           
Sbjct: 326 PGK---IISGGPMMGI--AQHSLDVPI----------IKGTGGILILTKEE--------- 361

Query: 337 SVFYKHESCGQCTPCREGTG 356
           +   +   C +C  C E   
Sbjct: 362 ARPQQVLPCIKCGKCVEVCP 381


>gi|294673543|ref|YP_003574159.1| RnfABCDGE type electron transport complex subunit C [Prevotella
           ruminicola 23]
 gi|294474365|gb|ADE83754.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella
           ruminicola 23]
          Length = 456

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 120/372 (32%), Gaps = 48/372 (12%)

Query: 15  LQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
           ++G    +S+ R    + V    E   + I+  V+ +G+ G GGA F T +K +  P   
Sbjct: 101 VEGDEWEESIDRSDKLELVAAHPELTPEEIVKRVQNAGVVGMGGACFPTFIKLTPPPTAK 160

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           ++    +++NA E EP    D  +M      ++ G  +          +I +        
Sbjct: 161 AEC---VIINAVECEPYITADYRLMMEHADEILVGLELLMMGAKVTKGYIGIETNKP--- 214

Query: 134 ESLQAAVDECYASGLLGSNSKL-GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
               AA++   A      N K  G    + V      Y  G E  L++++  +  Q    
Sbjct: 215 ----AAIELLTAK----CNEKFNGTQYQVEVVPLKLRYPQGGEKQLVDAVINR--QVPAP 264

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
           P  P NVG       V NV +   V   + +    +  +      G KL         P 
Sbjct: 265 PAIPVNVG-----AIVQNVGTAFAVYEAVMKNKPLFERYTT--VTGKKL-------QNPG 310

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM----------RGAI 302
                M     +LI+   G   G    L      G ++  +                   
Sbjct: 311 NFLVRMGTPMKDLIDACGGMPEGDNKLLAGGPMMGKALTSVEVPICKGTNSVTIISDDEA 370

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-----SCGQCTPCREGTGW 357
              D    +        V  M     ++  +  +  + + E     SC +C  C+     
Sbjct: 371 RRKDAQPCIRCAKCVG-VCPMGLEPYLLAKLSEVKNWERAESEDITSCIECGSCQYTCPA 429

Query: 358 MMRVMERLVKGI 369
              +++ +  G 
Sbjct: 430 YRPLLDNIRLGK 441


>gi|284921553|emb|CBG34625.1| electron transport complex protein [Escherichia coli 042]
          Length = 741

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + ++C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|91210842|ref|YP_540828.1| electron transport complex protein RnfC [Escherichia coli UTI89]
 gi|218558500|ref|YP_002391413.1| electron transport complex protein RnfC [Escherichia coli S88]
 gi|218689576|ref|YP_002397788.1| electron transport complex protein RnfC [Escherichia coli ED1a]
 gi|123387945|sp|Q1RBG7|RNFC_ECOUT RecName: Full=Electron transport complex protein rnfC
 gi|226735437|sp|B7M9Y3|RNFC_ECO45 RecName: Full=Electron transport complex protein rnfC
 gi|254807931|sp|B7MVA7|RNFC_ECO81 RecName: Full=Electron transport complex protein rnfC
 gi|91072416|gb|ABE07297.1| electron transport complex protein RnfC [Escherichia coli UTI89]
 gi|218365269|emb|CAR02990.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli S88]
 gi|218427140|emb|CAR08023.2| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli ED1a]
 gi|294490842|gb|ADE89598.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli IHE3034]
 gi|307626885|gb|ADN71189.1| electron transport complex protein RnfC [Escherichia coli UM146]
          Length = 708

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323968397|gb|EGB63803.1| electron transporter [Escherichia coli M863]
          Length = 740

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + ++C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|312143455|ref|YP_003994901.1| electron transport complex, RnfABCDGE type, C subunit
           [Halanaerobium sp. 'sapolanicus']
 gi|311904106|gb|ADQ14547.1| electron transport complex, RnfABCDGE type, C subunit
           [Halanaerobium sp. 'sapolanicus']
          Length = 443

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 117/339 (34%), Gaps = 64/339 (18%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
              D I N V+ +G+ G GGA F T +K S           Y+++N  E EP    D  +
Sbjct: 122 LSPDEIRNIVREAGIVGLGGAMFPTHVKLSV---PEDKNVEYVILNGAECEPYLTVDHRV 178

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M   P+ ++ G      A+ A    I +    +   ES+Q AV +               
Sbjct: 179 MVERPNAIVFGLKALMKAVNAEKGLIGIEDNKMEAVESMQDAVAD--------------- 223

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           + +I +      Y  G E  L+E+L   +  P    P    V        VNN  + A V
Sbjct: 224 EDNIEIKIVETKYPQGGEKMLIEALLD-REVPVGGLPLDIEV-------VVNNTSTAAAV 275

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +R G               +  SI+G  +  PC +   +     +L+E+  G     
Sbjct: 276 ADAIREGKPLID----------RSISITGRGIESPCNLIYRIGTKLSDLVEQAGG----L 321

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            ++ + VI GG  +    A +               +  GT+ ++V          +   
Sbjct: 322 KEDAVKVIAGGPMMGA--AQKNLDVP----------AVKGTSGLLVF---------VADE 360

Query: 337 SVFYKHESCGQCTPCREGTGW--MMRVMERLVKGIAQKR 373
              +  + C  C  C +      M   + R  K    ++
Sbjct: 361 VEEFDPDPCINCAKCVDHCPMYLMPTTLVRYAKNNMVEK 399


>gi|320195473|gb|EFW70098.1| Electron transport complex protein RnfC [Escherichia coli
           WV_060327]
          Length = 740

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVNELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|309793394|ref|ZP_07687821.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 145-7]
 gi|308122981|gb|EFO60243.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 145-7]
          Length = 772

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + E                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAESN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|193070267|ref|ZP_03051211.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E110019]
 gi|192956448|gb|EDV86907.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E110019]
          Length = 740

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|331663101|ref|ZP_08364011.1| electron transport complex protein RnfC [Escherichia coli TA143]
 gi|331058900|gb|EGI30877.1| electron transport complex protein RnfC [Escherichia coli TA143]
          Length = 640

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDITLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|157161091|ref|YP_001458409.1| electron transport complex protein RnfC [Escherichia coli HS]
 gi|166991047|sp|A8A0H2|RNFC_ECOHS RecName: Full=Electron transport complex protein rnfC
 gi|157066771|gb|ABV06026.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli HS]
          Length = 740

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|157157957|ref|YP_001462918.1| electron transport complex protein RnfC [Escherichia coli E24377A]
 gi|166991046|sp|A7ZM89|RNFC_ECO24 RecName: Full=Electron transport complex protein rnfC
 gi|157079987|gb|ABV19695.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E24377A]
          Length = 740

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|188495694|ref|ZP_03002964.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 53638]
 gi|188490893|gb|EDU65996.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 53638]
          Length = 740

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|191165932|ref|ZP_03027769.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B7A]
 gi|193064894|ref|ZP_03045970.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E22]
 gi|260843935|ref|YP_003221713.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein
           [Escherichia coli O103:H2 str. 12009]
 gi|260855454|ref|YP_003229345.1| fused putative 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O26:H11 str. 11368]
 gi|260868121|ref|YP_003234523.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein
           [Escherichia coli O111:H- str. 11128]
 gi|301303141|ref|ZP_07209267.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 124-1]
 gi|190904063|gb|EDV63775.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B7A]
 gi|192927381|gb|EDV81999.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E22]
 gi|257754103|dbj|BAI25605.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O26:H11 str. 11368]
 gi|257759082|dbj|BAI30579.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O103:H2 str. 12009]
 gi|257764477|dbj|BAI35972.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O111:H- str. 11128]
 gi|300841550|gb|EFK69310.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 124-1]
 gi|315257571|gb|EFU37539.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 85-1]
 gi|320197812|gb|EFW72420.1| Electron transport complex protein RnfC [Escherichia coli EC4100B]
 gi|323163522|gb|EFZ49348.1| electron transport complex protein rnfC [Escherichia coli E128010]
 gi|323180943|gb|EFZ66481.1| electron transport complex protein rnfC [Escherichia coli 1180]
          Length = 740

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|330911436|gb|EGH39946.1| electron transport complex protein RnfC [Escherichia coli AA86]
          Length = 709

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L                 VI GG  +                       
Sbjct: 310 VWARLGTPVRHLFNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|327252745|gb|EGE64399.1| electron transport complex protein rnfC [Escherichia coli STEC_7v]
          Length = 633

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 3   IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 55

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 56  DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 115

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 116 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 157

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 158 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 202

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 203 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 245

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + ++C +C+ C +      + + +    KG   
Sbjct: 246 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 298

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 299 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 332


>gi|323186099|gb|EFZ71455.1| electron transport complex protein rnfC [Escherichia coli 1357]
          Length = 708

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVRRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|301647804|ref|ZP_07247591.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 146-1]
 gi|301074064|gb|EFK88870.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 146-1]
          Length = 665

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 3   IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 55

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 56  DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 115

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 116 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 157

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 158 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 202

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 203 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 245

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 246 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 298

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 299 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 332


>gi|74312044|ref|YP_310463.1| electron transport complex protein RnfC [Shigella sonnei Ss046]
 gi|123759605|sp|Q3Z1Y4|RNFC_SHISS RecName: Full=Electron transport complex protein rnfC
 gi|73855521|gb|AAZ88228.1| putative membrane protein [Shigella sonnei Ss046]
          Length = 740

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|194436648|ref|ZP_03068749.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 101-1]
 gi|254161691|ref|YP_003044799.1| electron transport complex protein RnfC [Escherichia coli B str.
           REL606]
 gi|194424680|gb|EDX40666.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 101-1]
 gi|253973592|gb|ACT39263.1| electron transport complex protein RnfC [Escherichia coli B str.
           REL606]
 gi|253977787|gb|ACT43457.1| electron transport complex protein RnfC [Escherichia coli
           BL21(DE3)]
 gi|313848649|emb|CAQ32106.2| member of SoxR-reducing complex [Escherichia coli BL21(DE3)]
          Length = 740

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|170020019|ref|YP_001724973.1| electron transport complex protein RnfC [Escherichia coli ATCC
           8739]
 gi|312969650|ref|ZP_07783833.1| electron transport complex protein rnfC [Escherichia coli 1827-70]
 gi|189043391|sp|B1IQC5|RNFC_ECOLC RecName: Full=Electron transport complex protein rnfC
 gi|169754947|gb|ACA77646.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli ATCC 8739]
 gi|310337935|gb|EFQ03024.1| electron transport complex protein rnfC [Escherichia coli 1827-70]
          Length = 740

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|16129587|ref|NP_416146.1| electron transport complex protein required for the reduction of
           SoxR; predicted membrane-associated NADH oxidoreductase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89108471|ref|AP_002251.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli
           str. K-12 substr. W3110]
 gi|170081293|ref|YP_001730613.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238900845|ref|YP_002926641.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein
           [Escherichia coli BW2952]
 gi|17368316|sp|P77611|RNFC_ECOLI RecName: Full=Electron transport complex protein rnfC
 gi|226735441|sp|B1XFU1|RNFC_ECODH RecName: Full=Electron transport complex protein rnfC
 gi|259494049|sp|C4ZY92|RNFC_ECOBW RecName: Full=Electron transport complex protein rnfC
 gi|1742688|dbj|BAA15384.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli
           str. K12 substr. W3110]
 gi|1787916|gb|AAC74701.1| electron transport complex protein required for the reduction of
           SoxR; predicted membrane-associated NADH oxidoreductase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|169889128|gb|ACB02835.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238861218|gb|ACR63216.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli BW2952]
 gi|260449247|gb|ACX39669.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli DH1]
 gi|309701855|emb|CBJ01167.1| electron transport complex protein [Escherichia coli ETEC H10407]
 gi|315136270|dbj|BAJ43429.1| electron transport complex protein RnfC [Escherichia coli DH1]
          Length = 740

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|210630496|ref|ZP_03296483.1| hypothetical protein COLSTE_00368 [Collinsella stercoris DSM 13279]
 gi|210160448|gb|EEA91419.1| hypothetical protein COLSTE_00368 [Collinsella stercoris DSM 13279]
          Length = 418

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 119/364 (32%), Gaps = 65/364 (17%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +     + ++  I+ V+ SG+ G GGA F T   W  M         +LVVN  E EP  
Sbjct: 115 LKAPEYRTKEEFISCVRDSGMVGLGGASFPT---WFKMRAPEGKSFEFLVVNGMECEPYI 171

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D   M      +I+G   A  A+    A I V          LQ  V E         
Sbjct: 172 TSDYRQMMEHSERVIDGVFRALEALEIPAAVIGVEDNKPEAILELQRVVKE--------- 222

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
               G +  I V      Y  G E  L+++  G+          P +VG       V NV
Sbjct: 223 ---KGREDRIEVMSIPTKYPAGGEKVLIKATTGRDV---PAGGLPIDVG-----CLVVNV 271

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +I+ V    R G               K  +++G  +  P      + ++  ++IE   
Sbjct: 272 TTISRVEQYFRYGMPLTC----------KTVTVTGDCIAKPGNYRIPIGMSVRDVIEATG 321

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           G ++        +I GG  +           I                A++V+  +  + 
Sbjct: 322 GMVKEP----KKIIMGGPMMGRTITDIDCPII------------KANNAIVVLHDAAVLP 365

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE--VSKNIEGR 388
                        +C +C  C       +      + G ++  ++  L E  V   +E  
Sbjct: 366 D----------ETACIRCGRCVRACPLSLSPFA--LDGASRSHDVVALDEFAVMNCMECG 413

Query: 389 TICA 392
           + CA
Sbjct: 414 S-CA 416


>gi|315060936|gb|ADT75263.1| electron transport complex protein RnfC [Escherichia coli W]
 gi|323378493|gb|ADX50761.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli KO11]
          Length = 740

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|167551572|ref|ZP_02345326.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323654|gb|EDZ11493.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 735

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVAEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|293405128|ref|ZP_06649120.1| electron transport complex protein RnfC [Escherichia coli FVEC1412]
 gi|291427336|gb|EFF00363.1| electron transport complex protein RnfC [Escherichia coli FVEC1412]
          Length = 633

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDITLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|218554197|ref|YP_002387110.1| electron transport complex protein RnfC [Escherichia coli IAI1]
 gi|218695192|ref|YP_002402859.1| electron transport complex protein RnfC [Escherichia coli 55989]
 gi|226735440|sp|B7M0I6|RNFC_ECO8A RecName: Full=Electron transport complex protein rnfC
 gi|254807930|sp|B7L5I2|RNFC_ECO55 RecName: Full=Electron transport complex protein rnfC
 gi|218351924|emb|CAU97649.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli 55989]
 gi|218360965|emb|CAQ98538.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli IAI1]
 gi|323152867|gb|EFZ39137.1| electron transport complex protein rnfC [Escherichia coli EPECa14]
          Length = 708

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|315286322|gb|EFU45758.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 110-3]
          Length = 644

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|257875824|ref|ZP_05655477.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC20]
 gi|257809990|gb|EEV38810.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC20]
          Length = 445

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 115/323 (35%), Gaps = 61/323 (18%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I+ +++  G+ G+GGA F T +K+S      + + H L++N  E EP    D  +M+ 
Sbjct: 125 ETILKKIRQGGIAGKGGATFPTHVKFSI---DENKKIHTLILNGSECEPFLRSDAFLMQK 181

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           E   +I+G  IA   +      I +  +      ++QAA                  D  
Sbjct: 182 EAKKIIQGAKIAQKLLADPKIIIGIEDDKPLAISAMQAA---------------SAEDDT 226

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I V      Y  G E  L+E L  ++          A++G+      + NV +   +   
Sbjct: 227 IEVVTVPTVYPTGGEKQLVELLTDQEV---PLGGLTADIGI-----VLINVATSFAIAEA 278

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           +            +     +  +++G V +P  V+  +     ELI+   G        +
Sbjct: 279 VCY----------DKPLIERYTTVTGDVQHPRIVKNPLGTLAGELIDFAGGFQGAPSKLI 328

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
           L     G SV  L                ++    G+  ++V +  TD           Y
Sbjct: 329 LGGPMMGKSVKTL----------------KVPVTKGSNGIVVFNEETD---------WLY 363

Query: 341 KHESCGQCTPCREGTGWMMRVME 363
               C +C  C E    ++  ME
Sbjct: 364 AENPCIRCNKCVEACPMLLMPME 386


>gi|323169187|gb|EFZ54863.1| electron transport complex protein rnfC [Shigella sonnei 53G]
          Length = 708

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|170682353|ref|YP_001743625.1| electron transport complex protein RnfC [Escherichia coli SMS-3-5]
 gi|226735444|sp|B1LEQ7|RNFC_ECOSM RecName: Full=Electron transport complex protein rnfC
 gi|170520071|gb|ACB18249.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli SMS-3-5]
          Length = 676

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + ++C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|194425849|ref|ZP_03058405.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B171]
 gi|194415904|gb|EDX32170.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B171]
          Length = 740

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|315618815|gb|EFU99398.1| electron transport complex protein rnfC [Escherichia coli 3431]
          Length = 740

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  PC 
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPCN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323956694|gb|EGB52430.1| electron transporter [Escherichia coli H263]
          Length = 667

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|224584034|ref|YP_002637832.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254807932|sp|C0Q508|RNFC_SALPC RecName: Full=Electron transport complex protein rnfC
 gi|224468561|gb|ACN46391.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 704

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVAEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|118594443|ref|ZP_01551790.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Methylophilales bacterium HTCC2181]
 gi|118440221|gb|EAV46848.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Methylophilales bacterium HTCC2181]
          Length = 510

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 107/325 (32%), Gaps = 65/325 (20%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
             KI    R   I ++  SG+ G GGA F T +K +      ++    L+VNA E EP  
Sbjct: 121 WKKI---DRKETIKKISESGIVGLGGATFPTHLKLN-----NNNEVKTLIVNAAECEPYI 172

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +MR +   LIEG  +A   +GA  A I +        E L   +           
Sbjct: 173 TCDDMLMREKSAELIEGIRLALHLLGAQNAIIGIEDNKPEAIEKLALLIKN--------- 223

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                 D +I +      Y  G+   L+  + G +     K       G+      + NV
Sbjct: 224 ------DANISIKIVPTIYPSGDAKRLIYLITGIQI---AKGKRSTEYGM-----QMFNV 269

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
            +I  +   +  G              T++ +I+G V  P   E        +LI    G
Sbjct: 270 ATIIALYKFIHCGEPSI----------TRIITITGKVRTPNNYEVLFGTPLSDLIIDAGG 319

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                     + I GG  +                 L  +   +  A   V+D   ++I+
Sbjct: 320 KASQNG----SFIMGGPMMGYK--------------LPSVNVPVTKAMNCVIDAEPEMIE 361

Query: 332 AIWRLSVFYKHESCGQCTPCREGTG 356
               +        C +C  C E   
Sbjct: 362 NNNPVL------PCIRCAKCAEACP 380


>gi|224023701|ref|ZP_03642067.1| hypothetical protein BACCOPRO_00417 [Bacteroides coprophilus DSM
           18228]
 gi|224016923|gb|EEF74935.1| hypothetical protein BACCOPRO_00417 [Bacteroides coprophilus DSM
           18228]
          Length = 445

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 124/380 (32%), Gaps = 70/380 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + K      + I+ ++K +G+ G GGA F T +K +  P   ++    +++NA E EP  
Sbjct: 114 LVKECNLTPEEIVAKIKNAGVVGMGGACFPTHVKLTPPPGCKAEC---VIINAVECEPYL 170

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M  +   ++ G  I   A      +I +        + +        A+   G 
Sbjct: 171 TADHRLMLEKADEILVGVSILMKAAKVTKGYIGIENNKPDAIKLMTE-----KAAAYPG- 224

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I V      Y  G E  L++++ G+  Q    P  P NVG       V NV
Sbjct: 225 ---------IEVVPLKVKYPQGGEKQLIDAVIGR--QVPAPPAIPINVG-----AVVQNV 268

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +   V   ++          +      ++  ++G  +  P      M     +LIE   
Sbjct: 269 GTAYAVYEAVQ----------KNKPLFERVVIVTGKSLKNPSNFLTRMGTPMSQLIEAAG 318

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           G           VI GG  +    A       +            G++ V+VM+      
Sbjct: 319 GLPEDTGK----VIGGGPMMG--KALANIEVPVCK----------GSSGVLVMND----- 357

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
           K   R     + + C +C  C       +     L+   +   + + +      +    I
Sbjct: 358 KEARR----AEPQPCIRCAKCVSACPMGLEPF--LLATCSAHGDWERVE---HEMIMSCI 408

Query: 391 -CALGDAA---AWPIQGLIK 406
            C           P+   I+
Sbjct: 409 ECGSCQFTCPSRRPMLDYIR 428


>gi|82777103|ref|YP_403452.1| electron transport complex protein RnfC [Shigella dysenteriae
           Sd197]
 gi|309788404|ref|ZP_07683008.1| electron transport complex protein rnfC [Shigella dysenteriae 1617]
 gi|123742129|sp|Q32FE4|RNFC_SHIDS RecName: Full=Electron transport complex protein rnfC
 gi|81241251|gb|ABB61961.1| putative membrane protein [Shigella dysenteriae Sd197]
 gi|308923786|gb|EFP69289.1| electron transport complex protein rnfC [Shigella dysenteriae 1617]
          Length = 772

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGL--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|237743730|ref|ZP_04574211.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 7_1]
 gi|256028188|ref|ZP_05442022.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. D11]
 gi|260495794|ref|ZP_05815915.1| NADH dehydrogenase [Fusobacterium sp. 3_1_33]
 gi|289766120|ref|ZP_06525498.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D11]
 gi|229432761|gb|EEO42973.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 7_1]
 gi|260196641|gb|EEW94167.1| NADH dehydrogenase [Fusobacterium sp. 3_1_33]
 gi|289717675|gb|EFD81687.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D11]
          Length = 438

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 136/387 (35%), Gaps = 77/387 (19%)

Query: 29  WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI    E  +  +++ ++  G+ G GGA F T +K +  P    D    L++N  
Sbjct: 106 WAELTKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P +++EG  I    +     ++ +        ES++ A +    
Sbjct: 163 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATE---- 218

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++S+  ++         P+ VG+    
Sbjct: 219 --------GTG----INIVPLKTKYPQGGEKQLIKSVLNREV---PSGQLPSAVGV---- 259

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   +  G               K+ ++SG  +  P  ++ ++   F  
Sbjct: 260 -VVQNTGTAAAIYEAVVNG----------KPLIEKIVTVSGKAIKNPKNLKIAIGTPFSY 308

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++  +CG  R   + L   + GG  +    A     A +            GT+ ++ + 
Sbjct: 309 IL-DYCGVDREKMERL---VMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 352

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
                          YK +SC  C+ C       +   + +RL          +  Y + 
Sbjct: 353 TEE---------MRPYKTKSCISCSKCVSACPMGLEPLMFDRLAANKQYDEMAE--YNLM 401

Query: 383 KNIEGRT---ICALGDAAAWPIQGLIK 406
             IE  +   IC     A  P+   IK
Sbjct: 402 DCIECGSCNYICP----ANRPLAEAIK 424


>gi|331647118|ref|ZP_08348212.1| electron transport complex protein RnfC [Escherichia coli M605]
 gi|331043901|gb|EGI16037.1| electron transport complex protein RnfC [Escherichia coli M605]
          Length = 677

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L                 VI GG  +                       
Sbjct: 310 VWARLGTPVRHLFNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|209918942|ref|YP_002293026.1| electron transport complex protein RnfC [Escherichia coli SE11]
 gi|226735443|sp|B6IB67|RNFC_ECOSE RecName: Full=Electron transport complex protein rnfC
 gi|209912201|dbj|BAG77275.1| putative transport protein [Escherichia coli SE11]
          Length = 740

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323169935|gb|EFZ55591.1| electron transport complex protein rnfC [Escherichia coli LT-68]
          Length = 684

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 86  IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 138

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 139 DKIETLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREILIGIEDNKPQAIS 198

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 199 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 240

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 241 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 285

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 286 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 328

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 329 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 381

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 382 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 415


>gi|207857039|ref|YP_002243690.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|226735450|sp|B5QV02|RNFC_SALEP RecName: Full=Electron transport complex protein rnfC
 gi|206708842|emb|CAR33172.1| Electron transport complex protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 704

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 129/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +   P   +   ++         S
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF-PLPWLDVPVVKITNCLLAPS 364

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                A                     + +SC +C+ C +      + + +    KG   
Sbjct: 365 VTEMGAPQ-------------------EEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|198275774|ref|ZP_03208305.1| hypothetical protein BACPLE_01949 [Bacteroides plebeius DSM 17135]
 gi|198271403|gb|EDY95673.1| hypothetical protein BACPLE_01949 [Bacteroides plebeius DSM 17135]
          Length = 445

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 113/330 (34%), Gaps = 61/330 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + K      + I+ ++K +G+ G GGA F T +K +  P   ++    +++NA E EP  
Sbjct: 114 LVKECNLTPEEIVAKIKNAGIVGMGGACFPTHVKLTPPPGCKAEC---VIINAVECEPYL 170

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M  +   ++ G  I       + A+I +        + +        A+   G 
Sbjct: 171 TADHRLMLEKADEILVGVQILMKGAKVNKAYIGIENNKPDAIKLMTE-----KAAAYPG- 224

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I +      Y  G E  L++++ G+  Q    P  P NVG       V NV
Sbjct: 225 ---------IEIVPLKVKYPQGGEKQLIDAVIGR--QVPAPPAIPINVG-----AVVQNV 268

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +   V   ++          +      ++ +++G  +  P      M     +LIE   
Sbjct: 269 GTAYAVYEAVQ----------KNKPLFERVVTVTGKSLKNPSNFLTRMGTPMSQLIEAAG 318

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           G           VI GG  +    A       +            G++ V++M+      
Sbjct: 319 GLPEDTGK----VIGGGPMMG--KALVNTEVPICK----------GSSGVLIMND----- 357

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           K   R     + + C +C  C       + 
Sbjct: 358 KEARR----AEPQPCIRCAKCVSVCPMGLE 383


>gi|332343347|gb|AEE56681.1| electron transport complex RnfC [Escherichia coli UMNK88]
          Length = 708

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|253773413|ref|YP_003036244.1| electron transport complex protein RnfC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324457|gb|ACT29059.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
          Length = 708

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|15831592|ref|NP_310365.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. Sakai]
 gi|168763667|ref|ZP_02788674.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4501]
 gi|217328656|ref|ZP_03444737.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. TW14588]
 gi|13361805|dbj|BAB35761.1| putative membrane protein [Escherichia coli O157:H7 str. Sakai]
 gi|189366209|gb|EDU84625.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4501]
 gi|217318003|gb|EEC26430.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. TW14588]
 gi|320188315|gb|EFW62977.1| Electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC1212]
 gi|326341995|gb|EGD65776.1| Electron transport complex protein RnfC [Escherichia coli O157:H7
           str. 1044]
          Length = 772

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 132/433 (30%), Gaps = 99/433 (22%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL----------------- 411
             +    + ++  IE    C    A AW       L++ FR                   
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEA 456

Query: 412 ---IEERIDQYHR 421
               E R+ +  R
Sbjct: 457 KARFEARLARLER 469


>gi|293414946|ref|ZP_06657589.1| electron transport complex protein RnfC [Escherichia coli B185]
 gi|291432594|gb|EFF05573.1| electron transport complex protein RnfC [Escherichia coli B185]
          Length = 611

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|198244954|ref|YP_002215678.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|226735449|sp|B5FIE7|RNFC_SALDC RecName: Full=Electron transport complex protein rnfC
 gi|197939470|gb|ACH76803.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623424|gb|EGE29769.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 704

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVAEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|227885955|ref|ZP_04003760.1| electron transport complex protein RnfC [Escherichia coli 83972]
 gi|227837047|gb|EEJ47513.1| electron transport complex protein RnfC [Escherichia coli 83972]
          Length = 616

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|305666618|ref|YP_003862905.1| electron transport complex protein [Maribacter sp. HTCC2170]
 gi|88708889|gb|EAR01124.1| electron transport complex protein [Maribacter sp. HTCC2170]
          Length = 442

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 116/351 (33%), Gaps = 68/351 (19%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + K +   +  I+N V   G+ G GGA F + +K         D    L++N  E EP  
Sbjct: 115 LKKEITLSQKDILNHVTEYGIVGLGGATFPSHVKLDIKNDRKVDC---LIINGVECEPYL 171

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M  +   +I G  I   A+    A I +        E L+ A            
Sbjct: 172 TADHRLMLEKAEEIIVGIRILMHALHIEKAVIGIENNKKDAIEVLKEASRSANG------ 225

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I V      Y  G E  L+ ++  K+  P  K   P +VG+      V+NV
Sbjct: 226 ---------IKVAALRVKYPQGSEKQLIRAIL-KREVP--KGGLPMDVGV-----IVHNV 268

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHC 270
            +I  +   ++                 ++ +++G  ++ P      +     +L+ +  
Sbjct: 269 GTIYAIYQAVQH----------NQPLTERVVTVTGKKLDDPSNFWVKIGTPIKDLVAEVG 318

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           G      D    ++ GG  +    A +     +            GT+ ++V+       
Sbjct: 319 G----VPDGTRKIVNGGPMMG--KAMKNTDVPITK----------GTSGILVISEEEASR 362

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR---VMERLVKG---IAQKREI 375
           K             C +C+ C       +    +M    KG    A K +I
Sbjct: 363 KEAKN---------CIRCSQCVFVCPMGLEPHLLMNLSEKGLYERASKEDI 404


>gi|322677330|gb|EFY73394.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
          Length = 735

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|168750557|ref|ZP_02775579.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4113]
 gi|168757455|ref|ZP_02782462.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4401]
 gi|168771171|ref|ZP_02796178.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4486]
 gi|168775859|ref|ZP_02800866.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4196]
 gi|168783452|ref|ZP_02808459.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4076]
 gi|168789466|ref|ZP_02814473.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC869]
 gi|168800889|ref|ZP_02825896.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC508]
 gi|195939018|ref|ZP_03084400.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4024]
 gi|208810265|ref|ZP_03252141.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4206]
 gi|208821817|ref|ZP_03262137.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4042]
 gi|209399637|ref|YP_002270699.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4115]
 gi|254793246|ref|YP_003078083.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. TW14359]
 gi|261227926|ref|ZP_05942207.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|226735438|sp|B5Z463|RNFC_ECO5E RecName: Full=Electron transport complex protein rnfC
 gi|187768715|gb|EDU32559.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4196]
 gi|188015238|gb|EDU53360.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4113]
 gi|188999240|gb|EDU68226.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4076]
 gi|189355522|gb|EDU73941.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4401]
 gi|189359999|gb|EDU78418.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4486]
 gi|189370921|gb|EDU89337.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC869]
 gi|189376869|gb|EDU95285.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC508]
 gi|208724781|gb|EDZ74488.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4206]
 gi|208741940|gb|EDZ89622.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4042]
 gi|209161037|gb|ACI38470.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4115]
 gi|254592646|gb|ACT72007.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. TW14359]
 gi|326343546|gb|EGD67308.1| Electron transport complex protein RnfC [Escherichia coli O157:H7
           str. 1125]
          Length = 772

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|317484378|ref|ZP_07943297.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Bilophila
           wadsworthia 3_1_6]
 gi|316924386|gb|EFV45553.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Bilophila
           wadsworthia 3_1_6]
          Length = 445

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 102/325 (31%), Gaps = 54/325 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +   I  VKA+G+ G GGAGF   +K++            ++ N  E EP    D+  
Sbjct: 1   MDKQAFIAAVKAAGIVGEGGAGFPAHVKYAADAD-------TVIANGCECEPLLHTDQHH 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M H  + ++        A GA    I ++ ++    + L  A+                 
Sbjct: 54  MLHHANEIVRAFSELMQATGAKRGVIALKKKYKEATKILTDAIGNR-------------- 99

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              I +      Y  G+E  L+  + G+   P      P  VG       V NV ++  V
Sbjct: 100 --PIELALLPNFYPAGDEQTLVREVTGRSVPP---LGLPLMVG-----AVVANVGTLVSV 149

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              L                  K  +++G V  P  V   +       +E   G      
Sbjct: 150 AHALD-----------GKPVTHKFLTVTGEVKKPGIVCVPIGTPLSACLEAAGGPTVSDP 198

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                 + GG          M   + + D   +      +  +I++ R   + +      
Sbjct: 199 ----VFVLGGP--------MMGRMVDNADAFAKEVVTKTSGGLIILPRGHYLHRNATTPL 246

Query: 338 VFYKHESCGQCTPCREGTGWMMRVM 362
            F +  +   C  CR  +    R +
Sbjct: 247 NFMRRRAASACIQCRSCSELCPRHL 271


>gi|15802043|ref|NP_288065.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           EDL933]
 gi|17368144|sp|P58324|RNFC_ECO57 RecName: Full=Electron transport complex protein rnfC
 gi|12515618|gb|AAG56618.1|AE005386_9 putative membrane protein [Escherichia coli O157:H7 str. EDL933]
          Length = 740

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 132/433 (30%), Gaps = 99/433 (22%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL----------------- 411
             +    + ++  IE    C    A AW       L++ FR                   
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEA 456

Query: 412 ---IEERIDQYHR 421
               E R+ +  R
Sbjct: 457 KARFEARLARLER 469


>gi|298380776|ref|ZP_06990375.1| electron transport complex protein RnfC [Escherichia coli FVEC1302]
 gi|298278218|gb|EFI19732.1| electron transport complex protein RnfC [Escherichia coli FVEC1302]
          Length = 588

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDITLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|291282761|ref|YP_003499579.1| Electron transport complex protein RnfC [Escherichia coli O55:H7
           str. CB9615]
 gi|290762634|gb|ADD56595.1| Electron transport complex protein RnfC [Escherichia coli O55:H7
           str. CB9615]
 gi|320647300|gb|EFX16108.1| electron transport complex protein RnfC [Escherichia coli O157:H-
           str. 493-89]
 gi|320652594|gb|EFX20863.1| electron transport complex protein RnfC [Escherichia coli O157:H-
           str. H 2687]
 gi|320668653|gb|EFX35458.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. LSU-61]
          Length = 772

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|331673198|ref|ZP_08373966.1| electron transport complex protein RnfC [Escherichia coli TA280]
 gi|331069396|gb|EGI40783.1| electron transport complex protein RnfC [Escherichia coli TA280]
          Length = 608

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|300819310|ref|ZP_07099509.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 107-1]
 gi|300528081|gb|EFK49143.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 107-1]
          Length = 676

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|331657598|ref|ZP_08358560.1| electron transport complex protein RnfC [Escherichia coli TA206]
 gi|331055846|gb|EGI27855.1| electron transport complex protein RnfC [Escherichia coli TA206]
          Length = 622

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|117623815|ref|YP_852728.1| electron transport complex protein RnfC [Escherichia coli APEC O1]
 gi|166225090|sp|A1ABH4|RNFC_ECOK1 RecName: Full=Electron transport complex protein rnfC
 gi|115512939|gb|ABJ01014.1| electron transport complex protein RnfC [Escherichia coli APEC O1]
          Length = 708

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAEFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|324119385|gb|EGC13272.1| electron transporter [Escherichia coli E1167]
          Length = 655

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323937424|gb|EGB33702.1| electron transporter [Escherichia coli E1520]
          Length = 631

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|315609146|ref|ZP_07884115.1| electron transport complex protein RnfC [Prevotella buccae ATCC
           33574]
 gi|315249216|gb|EFU29236.1| electron transport complex protein RnfC [Prevotella buccae ATCC
           33574]
          Length = 464

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 116/358 (32%), Gaps = 63/358 (17%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            Q  I  N+   +G    +S+ R    + +D   E   + I+N VK +G+ G GGAGF T
Sbjct: 93  RQPVIIINV---EGDEWEESIDRSETLETLDMHPELTPEEIVNRVKVAGVTGMGGAGFPT 149

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
            +K    P   ++    +++N  E EP    D  +M      ++ G  +   A      +
Sbjct: 150 FIKLCPPPTAKAEC---VILNGVECEPYITSDYRLMMEHAREILVGLDLLMKAAKVERGY 206

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESL 182
           I +          L                     D  + +   A  Y  G E  L++++
Sbjct: 207 IGIEENKPEAIRLLTELTAG---------------DPRVEIVPLAQKYPQGGEKQLVDAV 251

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
              + Q    P  P NVG       V NV +   V   + +    +  +     +  K  
Sbjct: 252 I--RRQVPAPPAIPVNVG-----AIVQNVGTAFAVYQAVMKRKPLFERYTTVTGKQMK-- 302

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
                   P      M  TF +LI+   G   G    L     GG  +    A       
Sbjct: 303 -------QPGNFLVRMGTTFGQLIDLCGGLPEGDNKVLA----GGPMMG--KAVMSLDVP 349

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           +            GT ++ V+  S        R  V    + C +C  C +     + 
Sbjct: 350 VCK----------GTNSITVLTESD-----ARRKPV----QPCIRCAKCVQVCPMGLE 388


>gi|323962199|gb|EGB57793.1| electron transporter [Escherichia coli H489]
          Length = 659

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|16764805|ref|NP_460420.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167994288|ref|ZP_02575380.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|24638187|sp|Q8ZPM2|RNFC_SALTY RecName: Full=Electron transport complex protein rnfC
 gi|16419978|gb|AAL20379.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|205327844|gb|EDZ14608.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246661|emb|CBG24471.1| Electron transport complex protein rnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993347|gb|ACY88232.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157990|emb|CBW17485.1| Electron transport complex protein rnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912440|dbj|BAJ36414.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224076|gb|EFX49139.1| Electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129727|gb|ADX17157.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988342|gb|AEF07325.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 735

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 129/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTRILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|300936047|ref|ZP_07150994.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 21-1]
 gi|300458773|gb|EFK22266.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 21-1]
          Length = 578

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQI---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|322680007|gb|EFY76046.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
          Length = 673

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323242646|gb|EGA26667.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
          Length = 673

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|225386798|ref|ZP_03756562.1| hypothetical protein CLOSTASPAR_00546 [Clostridium asparagiforme
           DSM 15981]
 gi|225047114|gb|EEG57360.1| hypothetical protein CLOSTASPAR_00546 [Clostridium asparagiforme
           DSM 15981]
          Length = 441

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 114/343 (33%), Gaps = 64/343 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG K          R  +L+VN  E EP    DR +MRH    +I      +  +GA 
Sbjct: 20  FPTGKKLDC-------RVEWLIVNGAECEPLLRTDRYLMRHNAERVIRAAGAVARMVGAK 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++  + +E ++L+AA+           +   G    I +      Y  G+E  L+
Sbjct: 73  HCVIALKRAYTQEWKALEAALAG---------DGPEGGTALIELFPLDSFYPAGDEQVLV 123

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             +  +   P      P +VG   C     N  S A+    L +                
Sbjct: 124 YEVTERVVPP---AGIPLDVGAVVCNLATMNAISDAMDGIPLTK---------------- 164

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P  V   +   F+E I    G           VI GG          M 
Sbjct: 165 KYITVTGEVKCPSIVRAPVGTPFEECIRLAGG----SKKERYCVIDGGP---------MM 211

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR---LSVFYKHESCGQCTPCREGTG 356
           G IMDY+  +E      T+ +IV+D    +                 +C QC+ C +   
Sbjct: 212 GKIMDYEAAREEAVTKTTSGLIVLDEDHYLNVLAKTPVGRMKNLASAACIQCSYCTQLCP 271

Query: 357 WM--------MRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
                      ++M R   G      +D        +    IC
Sbjct: 272 RNLLGHPLEPHKIMRRFASGGDIPSLLDD-----PAVRQAAIC 309


>gi|293446004|ref|ZP_06662426.1| electron transport complex protein RnfC [Escherichia coli B088]
 gi|291322834|gb|EFE62262.1| electron transport complex protein RnfC [Escherichia coli B088]
          Length = 662

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|197303563|ref|ZP_03168602.1| hypothetical protein RUMLAC_02285 [Ruminococcus lactaris ATCC
           29176]
 gi|197297561|gb|EDY32122.1| hypothetical protein RUMLAC_02285 [Ruminococcus lactaris ATCC
           29176]
          Length = 439

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 117/356 (32%), Gaps = 59/356 (16%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  V  + E  R+ II+++  +G+ G GGAGF T +K S      +D+  Y++ N  E E
Sbjct: 110 YAPVKPLNEMTREEIISKIGDAGIVGMGGAGFPTRVKLS---PKDADKIEYIIANCAECE 166

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M      L+ G  +             V        + LQ AV E      
Sbjct: 167 PYITADYRRMLEYTEDLVSGMRVILSLFPNARGIFAVEDNKKDCIQKLQDAVSE------ 220

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                    +  + V      Y  G E  L+ ++ G+     +    PA+ G       V
Sbjct: 221 ---------EPKMDVKALMTKYPQGAERQLIYAVTGRAINASM---LPADAG-----CIV 263

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NVE++  +   +  G               ++ ++SG  V  P      + I+  ELIE
Sbjct: 264 DNVETLIGIHNAVING----------KPLMERVVTVSGDAVAEPGNFLVPLGISHKELIE 313

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE-----MGSGLGTAAV-I 321
              G      +    +I GG  +                 L       +     TA +  
Sbjct: 314 AAGG----FTEEPEKLISGGPMMGFAMVTLDAPVTKTSSSLLAFKEDIVKKSPETACINC 369

Query: 322 VMDRSTDIIKAI-WRLSVFYKHE-----------SCGQCTPCREGTGWMMRVMERL 365
                    + I  RL+ F K +            C +C  C        ++ + +
Sbjct: 370 ARCVDVCPSRIIPSRLADFAKRQDEASFVAWNGLECVECGSCSYVCPAKRQLKQSI 425


>gi|153953472|ref|YP_001394237.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
 gi|219854094|ref|YP_002471216.1| hypothetical protein CKR_0751 [Clostridium kluyveri NBRC 12016]
 gi|146346353|gb|EDK32889.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
 gi|219567818|dbj|BAH05802.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 320

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
           I++     ++  +     F   E CG+C PCREG   M+ +   + +G A++R+I+ + +
Sbjct: 154 IIIGDRNCMVDVVKDYLNFLSKEFCGKCIPCREGVKRMLEMATDICEGNAKERDIENMLQ 213

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +S  I   ++C LG  A  PI   I+ FR   EE +    RC
Sbjct: 214 MSYVISQASLCNLGKRAQNPIMIAIRYFRDEFEEHLKN-KRC 254



 Score = 43.5 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 1   MLTDQDRI-FTNLYGLQGKSLSDSMSRGHWDNVDKI-LEKGRDWII 44
               Q ++   N+  +   ++   + +G ++ + ++ LE   + II
Sbjct: 111 FYKRQYKVALKNVDDIDPTTIDQYIEKGGYEALKEVLLEMKPEIII 156


>gi|301050123|ref|ZP_07197027.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 185-1]
 gi|300298145|gb|EFJ54530.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 185-1]
          Length = 579

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|204927691|ref|ZP_03218892.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323033|gb|EDZ08229.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 729

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|82544003|ref|YP_407950.1| electron transport complex protein RnfC [Shigella boydii Sb227]
 gi|123741996|sp|Q320Y6|RNFC_SHIBS RecName: Full=Electron transport complex protein rnfC
 gi|81245414|gb|ABB66122.1| putative membrane protein [Shigella boydii Sb227]
 gi|320186301|gb|EFW61037.1| Electron transport complex protein RnfC [Shigella flexneri CDC
           796-83]
          Length = 740

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+       R        VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDA----RFCPSADQMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|28210724|ref|NP_781668.1| rnfC/nqrF [Clostridium tetani E88]
 gi|28203162|gb|AAO35605.1| rnfC/nqrF [Clostridium tetani E88]
          Length = 449

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 122/348 (35%), Gaps = 51/348 (14%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + IIN VK +G+ G GGA F T +K +  P    +   Y+VVNA E EP    D  
Sbjct: 131 KLSNEEIINIVKEAGIVGMGGATFPTNVKLTPPPDKKIE---YIVVNAAECEPYLTCDHR 187

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M      +I+G  +           I +        ++++ A                G
Sbjct: 188 MMLEHSKEIIKGLKVILKLFPNAKGLIGIEDNKPNAIKAMKEA--------------ASG 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            +  I V      Y  G E  L+ +L GK+         PA+ G       V NV+++  
Sbjct: 234 EE-RIEVKSVKTKYPQGAEKQLIYALIGKEV---PSGGLPADAG-----CIVQNVDTVYE 284

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G +  S          ++ +++G  +  P  +   +  +  EL+E   G +  
Sbjct: 285 IYNAVVNGKALVS----------RVVTVTGDAIKEPKNIRFRIGTSVKELVEAAGGFLEE 334

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGA------------IMDYDGLKEMGSGLGTAAVIVM 323
            +  +      G ++  L     +G             I D       G  +    + ++
Sbjct: 335 PYKVISGGPMMGIAMYSLDVPAAKGTSGILCLTKKVAEIEDESNCINCGKCVQVCPMNLI 394

Query: 324 DRSTDIIKAIWRLSVF--YKHESCGQCTPCREGTGWMMRVMERLVKGI 369
                +  +I    +F  +    C +C  C         +++R+  G 
Sbjct: 395 PTKLAVASSIRNYDMFNEFNGRDCIECGCCSFICPARRHLLQRIRSGK 442


>gi|332091211|gb|EGI96300.1| electron transport complex protein rnfC [Shigella boydii 5216-82]
          Length = 740

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323940294|gb|EGB36486.1| electron transporter [Escherichia coli E482]
          Length = 631

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLFWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|331653024|ref|ZP_08354029.1| electron transport complex protein RnfC [Escherichia coli M718]
 gi|331049122|gb|EGI21194.1| electron transport complex protein RnfC [Escherichia coli M718]
          Length = 596

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|194431936|ref|ZP_03064226.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           dysenteriae 1012]
 gi|194419844|gb|EDX35923.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           dysenteriae 1012]
          Length = 740

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SLRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|168463131|ref|ZP_02697062.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633861|gb|EDX52213.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 735

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|331668306|ref|ZP_08369154.1| electron transport complex protein RnfC [Escherichia coli TA271]
 gi|331063500|gb|EGI35411.1| electron transport complex protein RnfC [Escherichia coli TA271]
          Length = 620

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|300821500|ref|ZP_07101647.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 119-7]
 gi|300526003|gb|EFK47072.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 119-7]
          Length = 640

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|332096012|gb|EGJ01017.1| electron transport complex protein rnfC [Shigella boydii 3594-74]
          Length = 716

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 86  IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 138

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 139 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 198

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 199 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 240

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 241 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 285

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+       R        VI GG  +                       
Sbjct: 286 VWARLGTPVRHLLNDA----RFCPSADQMVIMGGPLMGF--TLPWLDVP----------- 328

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 329 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 381

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 382 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 415


>gi|322665219|gb|EFY61407.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|323194067|gb|EFZ79266.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323202876|gb|EFZ87911.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 642

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|281412300|ref|YP_003346379.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           naphthophila RKU-10]
 gi|281373403|gb|ADA66965.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           naphthophila RKU-10]
          Length = 435

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 116/339 (34%), Gaps = 71/339 (20%)

Query: 23  SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
            +  G ++         ++ ++  +K +G+ G GGA F T +K S  P+   D    L++
Sbjct: 108 YIETGDFER------MSKEEVLEVIKKAGIVGLGGAMFPTHVKLSPPPEKKVD---TLII 158

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           N  E EP    D  +M      +++G +I    +G   A + V    I    +L+     
Sbjct: 159 NGAECEPVLTIDHRLMLERAEDILQGILIMMKVLGVQKAVVGVESNKIDAYHNLKKVFK- 217

Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
                        GY VD  V      Y  G E  L+ ++ G +  PR     P +VG+ 
Sbjct: 218 -------------GYPVD--VALLKTKYPQGAEKQLIYAITG-RVVPRGG--LPMDVGV- 258

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSIT 261
                V NV +   V   +  G               +  ++SG  V  P  +   +   
Sbjct: 259 ----VVQNVGTCVAVKEAVVDGKPLV----------ERGVTVSGDAVKNPRNLIVRIGTP 304

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
             ++I  +CGGI    +    VI GG  +    +       +            GT+ + 
Sbjct: 305 VRDVI-DYCGGIDENTER---VILGGPMMGI--SITNLDVPV----------MKGTSGIT 348

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                                + C +C+ C +     ++
Sbjct: 349 AFLPK-----------KPQPQKPCIRCSECVQVCPMNLQ 376


>gi|256846561|ref|ZP_05552018.1| NADH dehydrogenase [Fusobacterium sp. 3_1_36A2]
 gi|294784148|ref|ZP_06749449.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium sp. 3_1_27]
 gi|256718330|gb|EEU31886.1| NADH dehydrogenase [Fusobacterium sp. 3_1_36A2]
 gi|294488218|gb|EFG35563.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium sp. 3_1_27]
          Length = 435

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 137/384 (35%), Gaps = 71/384 (18%)

Query: 29  WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI    E  +  +++ ++  G+ G GGA F T +K +  P    D    L++N  
Sbjct: 106 WAELSKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P +++EG  I    +     ++ +        ES++ A +    
Sbjct: 163 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATE---- 218

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++S+  ++         P+ VG+    
Sbjct: 219 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 259

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   +  G               K+ ++SG  +  P  ++ ++   F  
Sbjct: 260 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNLKVAIGTPFSY 308

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++  HCG      + +  ++ GG  +    A     A +            GT+ ++ + 
Sbjct: 309 IL-DHCG---INREEMARLVMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 352

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
                          YK +SC  C+ C       +   + +RL      +     ++ + 
Sbjct: 353 NEE---------MRPYKTKSCISCSKCVSACPMGLAPLMFDRLAAAKEYEEM--AVHNLM 401

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 402 DCIECGS-CAYICPANRPLAESIK 424


>gi|208816704|ref|ZP_03257824.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4045]
 gi|208731047|gb|EDZ79736.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4045]
          Length = 708

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323973845|gb|EGB69018.1| electron transporter [Escherichia coli TA007]
          Length = 623

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|315297365|gb|EFU56645.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 16-3]
          Length = 580

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|307138283|ref|ZP_07497639.1| electron transport complex protein RnfC [Escherichia coli H736]
 gi|331642222|ref|ZP_08343357.1| electron transport complex protein RnfC [Escherichia coli H736]
 gi|331039020|gb|EGI11240.1| electron transport complex protein RnfC [Escherichia coli H736]
          Length = 621

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|218512403|ref|ZP_03509243.1| formate dehydrogenase protein, beta subunit [Rhizobium etli 8C-3]
          Length = 119

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 56/109 (51%)

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           DY+        +G A ++V D + D++K       F   ESCG+CTPCR G+   +   +
Sbjct: 1   DYESFAARDGLIGHAGMVVFDDTADMLKQARFAMEFCAVESCGKCTPCRIGSTRGVETAD 60

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           ++ +GI  ++  +LL ++   ++  ++CALG    +P+   + +F    
Sbjct: 61  KIAQGIEPEKNRELLADLCNTMKFGSLCALGGFTPYPVMSAMTHFPEDF 109


>gi|324014761|gb|EGB83980.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 60-1]
          Length = 574

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|197265683|ref|ZP_03165757.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243938|gb|EDY26558.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 735

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 129/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTRILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|300988844|ref|ZP_07178839.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 45-1]
 gi|300407382|gb|EFJ90920.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 45-1]
          Length = 570

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|225572996|ref|ZP_03781751.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039647|gb|EEG49893.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM
           10507]
          Length = 653

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 108/322 (33%), Gaps = 67/322 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               D I++ V+ +G+ G GGAGF T +K        +     +++N  E EP    D  
Sbjct: 340 SLTPDEIVDIVREAGIVGMGGAGFPTSVKLK-----PAKPVDTILLNGCECEPLLTADHR 394

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++      +I G       +GA    I +        E LQA   +              
Sbjct: 395 VLLEFADDVIYGLKAIIKTVGAEKGLIVIEDNKPDAIELLQAKTADIS------------ 442

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI V      Y  G E  L++ + G +  PR     PA+VG       V+N+ +   
Sbjct: 443 ---DIDVVVAKTKYPQGAEKMLIKRVMG-RQVPRGG--LPADVG-----CVVSNISTTKA 491

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   ++ G               ++ +++G  +  P      +     ELI  +CGG+ G
Sbjct: 492 IADAIKTGMPLI----------ERVVTVTGERIKKPGNYIVKIGTNVKELI-DYCGGVIG 540

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               +     GG  +                    +    G+  +I ++  TD  + +  
Sbjct: 541 EDITIK---AGGPMMGF-------DLPN-----VNVPIMKGSNGIIAIE--TDHTETLE- 582

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                    C +C  C +    
Sbjct: 583 ---------CIKCGRCVDVCPM 595


>gi|168264620|ref|ZP_02686593.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|200390674|ref|ZP_03217285.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603119|gb|EDZ01665.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205346950|gb|EDZ33581.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 735

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|293409940|ref|ZP_06653516.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470408|gb|EFF12892.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 634

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  WD+      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWDDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + ++C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|158320804|ref|YP_001513311.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus
           oremlandii OhILAs]
 gi|158141003|gb|ABW19315.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus
           oremlandii OhILAs]
          Length = 442

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 101/320 (31%), Gaps = 60/320 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + I+  +K +G+ G GGA F T +K S  P    D     ++N  E EP    D  
Sbjct: 119 SLKPEEILAAIKDAGIVGMGGATFPTHVKLSVPPDKKVDN---FILNGAECEPFLTADHR 175

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M      ++EG +     +     FI +         +++ A ++              
Sbjct: 176 LMLEHSDEIVEGLLAMMKVVNVQNGFIGIEDNKPDAIAAMKKAAEK-------------- 221

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I V      Y  G E  L+ +   K+  P      PA+ G       VNNV + A 
Sbjct: 222 -YPNIKVVGLHTKYPQGAEKQLIYACT-KREVP--SGGLPADAG-----AIVNNVATAAQ 272

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   LR G                       +  P  +   + +   E+IE+  G     
Sbjct: 273 VAKTLRTGMPLIDRITT---------VTGSAIANPKNLLMKIGVPIKEVIEQCGG----Y 319

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 +I GG  +    A      ++            G + V+V D            
Sbjct: 320 SKTPGKIIMGGPMMGF--AQHSVDVVITK----------GGSGVLVFDE---------NE 358

Query: 337 SVFYKHESCGQCTPCREGTG 356
           +     + C +C  C +   
Sbjct: 359 ARIPDPQQCIRCGKCVDICP 378


>gi|332097845|gb|EGJ02818.1| electron transport complex protein rnfC [Shigella dysenteriae
           155-74]
          Length = 708

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SLRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|225175193|ref|ZP_03729189.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169369|gb|EEG78167.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 440

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 113/349 (32%), Gaps = 66/349 (18%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +F            D      W N+      G D +   ++ +G+ G GGA F T +K S
Sbjct: 97  VFIENDFQDTWH-EDVKPNDDWKNL------GVDDLKKIIREAGIVGMGGATFPTHVKVS 149

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
             P    D   Y+++NA E EP    D   M   P  ++ G       + A   +I +  
Sbjct: 150 PPPDQKID---YVLINAAECEPYLTSDHRAMLERPEDVVIGLQTVMKVVNAPKGYIGIED 206

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
                 E+++ A +                  +I VH     Y  G E  L+    G++ 
Sbjct: 207 NKPDAVEAMKKAAEGID---------------NIEVHALHTKYPQGAEKQLISVFTGREV 251

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
                   P+ VG       V NV +   +   +R G             G         
Sbjct: 252 ---PSGGLPSMVG-----CVVQNVGTCIAISEAIRLGKPLIERNVTITGSG--------- 294

Query: 248 VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
           +N P  +   +    +E+IE+  G       N+  +I GG  +    +G     ++    
Sbjct: 295 INEPKNMLVRVGTPMEEVIEQCGG----FKPNIRKMILGGPMMGLAQSGPENQPVI---- 346

Query: 308 LKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                   GT+ ++ +  +   +  I           C +C  C E   
Sbjct: 347 -------KGTSGILCLTDAEVTLDEIR---------PCIKCAKCVEVCP 379


>gi|320181352|gb|EFW56271.1| Electron transport complex protein RnfC [Shigella boydii ATCC 9905]
          Length = 708

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|24113019|ref|NP_707529.1| electron transport complex protein RnfC [Shigella flexneri 2a str.
           301]
 gi|30063144|ref|NP_837315.1| electron transport complex protein RnfC [Shigella flexneri 2a str.
           2457T]
 gi|110805602|ref|YP_689122.1| electron transport complex protein RnfC [Shigella flexneri 5 str.
           8401]
 gi|81724487|sp|Q83RB9|RNFC_SHIFL RecName: Full=Electron transport complex protein rnfC
 gi|122366544|sp|Q0T4E8|RNFC_SHIF8 RecName: Full=Electron transport complex protein rnfC
 gi|24051983|gb|AAN43236.1| putative membrane protein [Shigella flexneri 2a str. 301]
 gi|30041393|gb|AAP17122.1| putative membrane protein [Shigella flexneri 2a str. 2457T]
 gi|110615150|gb|ABF03817.1| putative membrane protein [Shigella flexneri 5 str. 8401]
 gi|281601063|gb|ADA74047.1| Electron transport complex protein rnfC [Shigella flexneri 2002017]
 gi|332757136|gb|EGJ87476.1| electron transport complex protein rnfC [Shigella flexneri 4343-70]
 gi|332758063|gb|EGJ88388.1| electron transport complex protein rnfC [Shigella flexneri 2747-71]
 gi|333003991|gb|EGK23526.1| electron transport complex protein rnfC [Shigella flexneri K-218]
          Length = 740

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|300990137|ref|ZP_07179144.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 200-1]
 gi|300305772|gb|EFJ60292.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 200-1]
          Length = 571

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|197250222|ref|YP_002146588.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|226735448|sp|B5F6J0|RNFC_SALA4 RecName: Full=Electron transport complex protein rnfC
 gi|197213925|gb|ACH51322.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 735

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|150390047|ref|YP_001320096.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149949909|gb|ABR48437.1| electron transport complex, RnfABCDGE type, C subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 442

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 106/311 (34%), Gaps = 62/311 (19%)

Query: 53  RGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIA 112
            G GGA F T +K S  P    D    +++N  E EP    D  IM   P  ++ G  + 
Sbjct: 135 VGMGGATFPTHVKLSPPPGKKLD---TIILNGAECEPYLTADHRIMLESPDEIVYGLKVI 191

Query: 113 SFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYIC 172
             A+ A  A+I +        E+++ AV                   DI V      Y  
Sbjct: 192 MKAVQAEKAYIGIENNKPDAIEAMKKAVANEK---------------DIEVVSLETKYPQ 236

Query: 173 GEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFG 232
           G E  L+ +   +          P +VG+      VNNV + A +   ++ G        
Sbjct: 237 GAEKQLITACTQRVV---PSGGLPMDVGV-----LVNNVATAAQIAKTIKTGMPLI---- 284

Query: 233 RENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
                  ++ ++SG  +  P  +   +     ++IE+  G      +    +I GG  + 
Sbjct: 285 ------ERITTVSGKAIKTPKNLLIKVGTPMKDIIEQCGG----YSEKPGKIIMGGPMMG 334

Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351
              A Q     +            G++ V++              + F +  +C +C  C
Sbjct: 335 M--AQQGVEVPLTK----------GSSGVLLFTEQQ---------AKFPERSNCIRCAKC 373

Query: 352 REGTGWMMRVM 362
                  ++ +
Sbjct: 374 VSVCPVYLQPL 384


>gi|317471774|ref|ZP_07931113.1| electron transport complex [Anaerostipes sp. 3_2_56FAA]
 gi|316900751|gb|EFV22726.1| electron transport complex [Anaerostipes sp. 3_2_56FAA]
          Length = 438

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 108/322 (33%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  RD ++  +K +G+ G GGAGF T +K   +     D   Y++VN  E EP    D  
Sbjct: 117 DMTRDEVLAAIKDAGIVGLGGAGFPTHVK---LAPKDPDAIEYIIVNGAECEPYITGDYR 173

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           IM   P  L+EG  I           I V          +   V                
Sbjct: 174 IMMETPEVLVEGLNIVLDLFPKAKGIIAVEDNKKDAIAKVSDCVKG-------------- 219

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I V      Y  G E +L+ +  G+     +    PA+ G       V+NV +I  
Sbjct: 220 -DARISVAELKTKYPQGAERSLIYATTGRAINSSM---LPADAG-----CIVDNVATIVA 270

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   ++ G   +           ++ +++G  +  P  +         ELIE   G    
Sbjct: 271 VKDAVKEGKPLFQ----------RVVTVTGDAIESPKNLLVRTGTNVSELIEAAGG---- 316

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  VI GG          M G  M    +  + +    ++++   +  D + A+  
Sbjct: 317 FKGQPEKVISGGP---------MMGMAMFTTDVPAVKTF---SSLLAFTK--DPVSAV-- 360

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                +  +C  C  C      
Sbjct: 361 -----EPSNCINCGRCVSVCPQ 377


>gi|187732180|ref|YP_001880384.1| electron transport complex protein RnfC [Shigella boydii CDC
           3083-94]
 gi|226735456|sp|B2U2C8|RNFC_SHIB3 RecName: Full=Electron transport complex protein rnfC
 gi|187429172|gb|ACD08446.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           boydii CDC 3083-94]
          Length = 708

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     L+EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQLVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+       R        VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDA----RFCPSADQMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|168240973|ref|ZP_02665905.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448184|ref|YP_002045495.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|226735452|sp|B4THD4|RNFC_SALHS RecName: Full=Electron transport complex protein rnfC
 gi|194406488|gb|ACF66707.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339389|gb|EDZ26153.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 735

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|168235530|ref|ZP_02660588.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734341|ref|YP_002114470.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|226735455|sp|B4TV17|RNFC_SALSV RecName: Full=Electron transport complex protein rnfC
 gi|194709843|gb|ACF89064.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291094|gb|EDY30447.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 732

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323947999|gb|EGB43992.1| electron transporter [Escherichia coli H120]
          Length = 643

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|194443713|ref|YP_002040706.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|226735453|sp|B4T594|RNFC_SALNS RecName: Full=Electron transport complex protein rnfC
 gi|194402376|gb|ACF62598.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 735

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|161614124|ref|YP_001588089.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|189043393|sp|A9N025|RNFC_SALPB RecName: Full=Electron transport complex protein rnfC
 gi|161363488|gb|ABX67256.1| hypothetical protein SPAB_01863 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 735

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|288926954|ref|ZP_06420851.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella
           buccae D17]
 gi|288336274|gb|EFC74658.1| electron transport complex, RnfABCDGE type, C subunit [Prevotella
           buccae D17]
          Length = 464

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 116/358 (32%), Gaps = 63/358 (17%)

Query: 4   DQDRIFTNLYGLQGKSLSDSMSRGH-WDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
            Q  I  N+   +G    +S+ R    + +D   E   + I+N VK +G+ G GGAGF T
Sbjct: 93  RQPVIIINV---EGDEWEESIDRSETLETLDMHPELTPEEIVNRVKVAGVTGMGGAGFPT 149

Query: 63  GMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAF 122
            +K    P   ++    +++N  E EP    D  +M      ++ G  +   A      +
Sbjct: 150 FIKLCPPPTAKAEC---VILNGVECEPYITSDYRLMMEHAREILVGLDLLMKAAKVERGY 206

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESL 182
           I +          L                     D  + +   A  Y  G E  L++++
Sbjct: 207 IGIEENKPEAIRLLTELTAG---------------DPRVEIVPLAQKYPQGGEKQLVDAV 251

Query: 183 EGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLF 242
              + Q    P  P NVG       V NV +   V   + +    +  +     +  K  
Sbjct: 252 I--RRQVPAPPAIPVNVG-----GIVQNVGTAFAVYQAVMKRKPLFERYTTVTGKQMK-- 302

Query: 243 SISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
                   P      M  TF +LI+   G   G    L     GG  +    A       
Sbjct: 303 -------QPGNFLVRMGTTFGQLIDLCGGLPEGDNKVLA----GGPMMG--KAVMSLDVP 349

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           +            GT ++ V+  S        R  V    + C +C  C +     + 
Sbjct: 350 VCK----------GTNSITVLTESD-----ARRKPV----QPCIRCAKCVQVCPMGLE 388


>gi|320653114|gb|EFX21308.1| electron transport complex protein RnfC [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
          Length = 677

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|331677494|ref|ZP_08378169.1| electron transport complex protein RnfC [Escherichia coli H591]
 gi|331073954|gb|EGI45274.1| electron transport complex protein RnfC [Escherichia coli H591]
          Length = 544

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 33  IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 85

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 86  DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 145

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 146 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 187

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 188 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 232

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 233 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 275

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 276 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 328

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 329 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 362


>gi|257866189|ref|ZP_05645842.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC30]
 gi|257872520|ref|ZP_05652173.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC10]
 gi|257800123|gb|EEV29175.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC30]
 gi|257806684|gb|EEV35506.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC10]
          Length = 445

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 114/323 (35%), Gaps = 61/323 (18%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I+ +++  G+ G+GGA F T +K+S      + + H L++N  E EP    D  +M+ 
Sbjct: 125 ETILKKIRQGGIAGKGGATFPTHVKFSI---DENKKIHTLILNGSECEPFLRSDAFLMQK 181

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           E   +I+G  IA   +      I +  +      ++QAA                  D  
Sbjct: 182 EAKKIIQGAKIAQKLLADPKIIIGIEDDKPLAISAMQAA---------------SAEDDT 226

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I V      Y  G E  L+E L  ++          A++G+      + NV +   +   
Sbjct: 227 IEVVTVPTVYPTGGEKQLVELLTDQEV---PLGGLTADIGI-----VLINVATSFAIAEA 278

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           +            +     +  +++G V +P  V+  +     ELI+   G        +
Sbjct: 279 VCY----------DKPLIERYTTVTGDVQHPRIVKNPLGTLAGELIDFAGGFQGAPSKLI 328

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
           L     G SV  L                ++    G+  ++V +  TD           Y
Sbjct: 329 LGGPMMGKSVKTL----------------KVPVTKGSNGIVVFNEETD---------WLY 363

Query: 341 KHESCGQCTPCREGTGWMMRVME 363
               C +C  C E     +  ME
Sbjct: 364 AENPCIRCNKCVEACPMRLMPME 386


>gi|323952614|gb|EGB48486.1| electron transporter [Escherichia coli H252]
          Length = 651

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAEFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|205352830|ref|YP_002226631.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226735451|sp|B5RAK2|RNFC_SALG2 RecName: Full=Electron transport complex protein rnfC
 gi|205272611|emb|CAR37520.1| putative electron transport complex protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627901|gb|EGE34244.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 673

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|315291967|gb|EFU51319.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 153-1]
          Length = 569

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|331683136|ref|ZP_08383737.1| electron transport complex protein RnfC [Escherichia coli H299]
 gi|331079351|gb|EGI50548.1| electron transport complex protein RnfC [Escherichia coli H299]
          Length = 624

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + ++C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQNCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|56413574|ref|YP_150649.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362498|ref|YP_002142135.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|81360680|sp|Q5PIB9|RNFC_SALPA RecName: Full=Electron transport complex protein rnfC
 gi|226735454|sp|B5BKB2|RNFC_SALPK RecName: Full=Electron transport complex protein rnfC
 gi|56127831|gb|AAV77337.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093975|emb|CAR59471.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 735

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  ++ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAISRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|331091237|ref|ZP_08340078.1| hypothetical protein HMPREF9477_00721 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404684|gb|EGG84223.1| hypothetical protein HMPREF9477_00721 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 444

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 120/357 (33%), Gaps = 64/357 (17%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  V  + E  ++ II+ +K +G+ G GGAGF T +K S       ++  Y++ N  E E
Sbjct: 116 YLPVKPLEEMTKEEIIDRIKEAGIVGMGGAGFPTHVKLS---PKEPEKIDYVIANCAECE 172

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M   P  LI G  +             V        E L+   ++      
Sbjct: 173 PYITADYRRMLENPEELISGMRVVLSIFPQAKGIFGVEDNKPDCIEKLRKLTEK------ 226

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                    +  + V      Y  G E  L+ +  G+     +    PA+ G       V
Sbjct: 227 ---------ESRMEVKALKTKYPQGAERQLIFATTGRAINSSM---LPADAG-----CVV 269

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NVE++  + T +  G               ++ ++SG  V  P   +        E+IE
Sbjct: 270 DNVETMIAIHTAVVEG----------KAVTERIVTLSGDAVKEPGNFKVLFGTNHQEVIE 319

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              GG +   +    +I GG  +    A       +       +G               
Sbjct: 320 -AGGGFKNPPEK---IISGGPMMGF--AMFTTDTPITKTSSSILGFTK------------ 361

Query: 328 DIIKAIWRLSVFYKHESCGQCT---PCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
           D +KA           +CG+C    P R     +  + ER        ++++ L  +
Sbjct: 362 DEVKAN----EPTACINCGRCVEVCPSRIIPSRLADLAER--HDEEGFKKLEGLECI 412


>gi|332758459|gb|EGJ88780.1| electron transport complex protein rnfC [Shigella flexneri K-671]
 gi|332767030|gb|EGJ97229.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           flexneri 2930-71]
          Length = 684

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 86  IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 138

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 139 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 198

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 199 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 240

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 241 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 285

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 286 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 328

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 329 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 381

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 382 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 415


>gi|333005285|gb|EGK24805.1| electron transport complex protein rnfC [Shigella flexneri VA-6]
          Length = 708

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|320658803|gb|EFX26477.1| electron transport complex protein RnfC [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 631

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|46202219|ref|ZP_00053559.2| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Magnetospirillum magnetotacticum MS-1]
          Length = 498

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 118/339 (34%), Gaps = 62/339 (18%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVK----ASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           DS  +  W      +        NE+K     +G+ G GGA F + +K          + 
Sbjct: 102 DSDGKDEWAEPMAAIADPFAASANEIKTRVAEAGIVGLGGATFPSAVKLGL---GGQHKL 158

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             L++N  E EP    D  +MR     +++G  I + A+GA    I V     +  ESL+
Sbjct: 159 EILLLNGAECEPYLTCDDRVMREFAAQVVDGARIMAHALGAPKVIIAVEDNKPQAVESLK 218

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A   +                 ++ V      Y  G E  L +++ G++   R      A
Sbjct: 219 AEAAK---------------TPNVEVVGVPVQYPMGAERHLTQAVTGRETPARK---LTA 260

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           +VG+      V+NV +   V   +R G    S     +  G         V  P  +E  
Sbjct: 261 DVGV-----VVHNVATARAVHQAVRLGRPLVSRVVTVSGGG---------VAEPKNIEVP 306

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +     EL+   CGGI         VI GG          M G  +    +       GT
Sbjct: 307 LGTKVSELL-DFCGGIS---KATKRVISGGP---------MMGQPLPSLDVA---VVKGT 350

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQC-TPCREGT 355
           + ++ + +S    +     S       CG C T C  G 
Sbjct: 351 SGILALTQS----ETNEHASSPCIR--CGSCVTYCPCGL 383


>gi|313648904|gb|EFS13341.1| electron transport complex protein rnfC [Shigella flexneri 2a str.
           2457T]
          Length = 676

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|307310800|ref|ZP_07590446.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli W]
 gi|306908978|gb|EFN39474.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli W]
          Length = 608

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|94498904|ref|ZP_01305442.1| electron transport complex protein RnfC [Oceanobacter sp. RED65]
 gi|94428536|gb|EAT13508.1| electron transport complex protein RnfC [Oceanobacter sp. RED65]
          Length = 727

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 112/332 (33%), Gaps = 60/332 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +D  LE  RD +I+ ++ SG+ G GGA F T +K      V  +R   L++NA E EP
Sbjct: 118 KGLDNPLETDRDTLIDIIQQSGITGLGGASFPTHVK----TCVPEERIDTLILNAAECEP 173

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +MR     L++G  +           I +        E+LQ A+D        
Sbjct: 174 YITADDMLMRSYADGLVKGIELLFHLYQPEKCLIGIEDNKPEAIEALQKALDATTDD--- 230

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                      I V      Y  G E  L++ L GK+         PA++G+        
Sbjct: 231 --------THKIHVVTIPTKYPSGGEKQLIQILTGKEVPANG---LPADIGV-----ACQ 274

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEK 268
           NV +   +          Y           ++ +++G   N     E  +      L+E+
Sbjct: 275 NVGTAYAI----------YEAIYLGKPLIKRITTVTGEAANNKANFETLLGTPVHHLLEQ 324

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                   +D +  +I GG  +                        L T  V V+  +  
Sbjct: 325 ----GETDFDKVHRLIMGGPMMGF---------------------TLQTDEVPVVKSTNC 359

Query: 329 IIKAIWR-LSVFYKHESCGQCTPCREGTGWMM 359
           II +    L      + C +C  C E     +
Sbjct: 360 IIASTANELPDPAMEQPCIRCGMCTEACPAQL 391


>gi|256022710|ref|ZP_05436575.1| electron transport complex protein RnfC [Escherichia sp. 4_1_40B]
          Length = 597

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|255524147|ref|ZP_05391107.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
 gi|296186604|ref|ZP_06855006.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
 gi|255512132|gb|EET88412.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
 gi|296048641|gb|EFG88073.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
          Length = 441

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 110/334 (32%), Gaps = 67/334 (20%)

Query: 24  MSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           + R  W+ +DK        ++N +K +G+ G GGA F T +K S  P    D     ++N
Sbjct: 112 VERNDWEKLDK------KELLNIIKEAGIVGMGGATFPTHVKLSPPPDKKVD---TFILN 162

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           A E EP    D  +M  +   ++ G  I    +G    ++ +        + +  A +  
Sbjct: 163 AAECEPYLTADHRMMLEQSERIVNGVKITMKVLGIDKGYVGIEQNKPDAIDVMTKAFE-- 220

Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
                       G    + V      Y  G E  L+  L  K+         PA+VG+  
Sbjct: 221 ----------GTG----VQVVGLPTKYPQGAEKMLIRVLVEKEV---PSGGLPADVGV-- 261

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFD 263
               V NV ++A +   + +G                     G +  P  +   +   F 
Sbjct: 262 ---VVQNVGTVAAISDAVLKGIPLIERVTTI---------SGGAIKEPKNLLVRVGTLFS 309

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           + IE +CGG     + LL    GG  +    A       +            G + ++ +
Sbjct: 310 DAIE-YCGGFSETPEKLL---SGGPMMGM--AQSHIDLPI----------IKGVSGILAL 353

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
            +               +  +C  C  C E    
Sbjct: 354 SKKD---------VNSGRESACIHCGRCVEVCPM 378


>gi|300907218|ref|ZP_07124880.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 84-1]
 gi|300401022|gb|EFJ84560.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 84-1]
          Length = 573

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|16760456|ref|NP_456073.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|25330737|pir||AE0692 probable NADH reducing dehydrogenase STY1665 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502752|emb|CAD01910.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 673

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGD 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  ++ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAISRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323268765|gb|EGA52224.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 655

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|171463483|ref|YP_001797596.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193021|gb|ACB43982.1| NADH dehydrogenase (quinone) [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 110

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           M    +++D L+  G  + +AAV+V             +  F++HESCGQCTPCR GTG 
Sbjct: 1   MNDIPLNFDTLQPYGCFIDSAAVMVFSDKDKARDMALNVMHFFEHESCGQCTPCRVGTGK 60

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             ++M        +  +   L E++  +   +IC  G AA  PI+ + K F   +
Sbjct: 61  AAQLM------QTKSWDRKTLEELATVMVDASICGRGQAAPNPIRCIHKYFPEEV 109


>gi|168229832|ref|ZP_02654890.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470158|ref|ZP_03076142.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194456522|gb|EDX45361.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335440|gb|EDZ22204.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 735

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|300921314|ref|ZP_07137681.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 115-1]
 gi|300411733|gb|EFJ95043.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 115-1]
          Length = 576

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|237741389|ref|ZP_04571870.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           4_1_13]
 gi|229430921|gb|EEO41133.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           4_1_13]
          Length = 435

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 137/384 (35%), Gaps = 71/384 (18%)

Query: 29  WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI    E  +  +++ ++  G+ G GGA F T +K +  P    D    L++N  
Sbjct: 106 WTELSKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P +++EG  I    +     ++ +        ES++ A +    
Sbjct: 163 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKATE---- 218

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++S+  ++         P+ VG+    
Sbjct: 219 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 259

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   +  G               K+ ++SG  +  P  ++ ++   F  
Sbjct: 260 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNLKVAIGTPFSY 308

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++  HCG      + +  ++ GG  +    A     A +            GT+ ++ + 
Sbjct: 309 IL-DHCG---INREEMARLVMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 352

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
                          YK +SC  C+ C       +   + +RL      +     ++ + 
Sbjct: 353 NEE---------MRPYKTKSCISCSKCVSACPMGLAPLMFDRLAAAKEYEEM--AVHNLM 401

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 402 DCIECGS-CAYICPANRPLAESIK 424


>gi|168819208|ref|ZP_02831208.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343902|gb|EDZ30666.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 704

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---THSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323247769|gb|EGA31709.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
          Length = 447

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|19704917|ref|NP_602412.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19712812|gb|AAL93711.1| Nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 441

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 134/384 (34%), Gaps = 71/384 (18%)

Query: 29  WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI    E  +  +++ ++  G+ G GGA F T +K +  P    D    L++N  
Sbjct: 112 WAELSKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTQLDS---LILNGA 168

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P +++EG  I    +     ++ +        ES++ A +    
Sbjct: 169 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPNVYVGIEDNKPEAIESMRKATE---- 224

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++S+  ++         P+ VG+    
Sbjct: 225 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 265

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   +  G               K+ ++SG  +  P  V+ ++   F  
Sbjct: 266 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNVKVAIGTPFSY 314

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           +++          + +  ++ GG  +    A     A +            GT+ ++ + 
Sbjct: 315 ILDNCG----INREEMARLVMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 358

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
                          YK ++C  C+ C       +   + +RL      +      + + 
Sbjct: 359 NEE---------MRPYKTKACISCSKCVSACPMGLAPLMFDRLAAAKEYEEMAA--HNLM 407

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 408 DCIECGS-CAYICPANRPLAESIK 430


>gi|29141784|ref|NP_805126.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213051629|ref|ZP_03344507.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425981|ref|ZP_03358731.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649168|ref|ZP_03379221.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855037|ref|ZP_03383277.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|29137412|gb|AAO68975.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 673

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGD 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  ++ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAISRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|320086067|emb|CBY95841.1| Electron transport complex protein rnfC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 642

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---THSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|333017993|gb|EGK37298.1| electron transport complex protein rnfC [Shigella flexneri K-304]
          Length = 601

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 3   IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 55

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 56  DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 115

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 116 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 157

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 158 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 202

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 203 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 245

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 246 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 298

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 299 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 332


>gi|323217293|gb|EGA02013.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
          Length = 579

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|161503451|ref|YP_001570563.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189043392|sp|A9MRW8|RNFC_SALAR RecName: Full=Electron transport complex protein rnfC
 gi|160864798|gb|ABX21421.1| hypothetical protein SARI_01525 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 673

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 129/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGI 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I ++ +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAYILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +   +      L+                VI GG  +                       
Sbjct: 310 IWARLGTPVRHLLNNAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   +    +  SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSATEMGAPQEETSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|322641119|gb|EFY37762.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
          Length = 644

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|164687861|ref|ZP_02211889.1| hypothetical protein CLOBAR_01505 [Clostridium bartlettii DSM
           16795]
 gi|164603136|gb|EDQ96601.1| hypothetical protein CLOBAR_01505 [Clostridium bartlettii DSM
           16795]
          Length = 452

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 140/405 (34%), Gaps = 77/405 (19%)

Query: 18  KSLSDSMS-RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
           + L +S+   G  +++          II  ++ +G+ G GGA F T +K S  P    D 
Sbjct: 104 EELDESVKPHGELESL------DPKEIIKIIQDAGIVGMGGATFPTHVKLSPPPDSNID- 156

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
              +++N  E EP    D  +M   P  ++ G      A+  H  +I +        E++
Sbjct: 157 --VIILNGAECEPYLTADHRLMVEMPDDVVFGIRAVMRALDVHKGYIGIEVNKPDAIEAV 214

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
             A +                  ++ V      Y  G E  L+ +  G +  P      P
Sbjct: 215 TKAAEP---------------YPEVEVVGLEIKYPQGAEKQLIYACTGGREVP--SGALP 257

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVE 255
           A  G       V NV + A +   ++ G               ++ +I+G  +  P  + 
Sbjct: 258 AAAG-----AVVTNVGTAAQIAKSIKTGLPLI----------ERITTITGDAIKDPKNLI 302

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +     E+I   CGG + G +    VI GG  +             +     +  S  
Sbjct: 303 TKVGTPICEII-DQCGGFKEGVNVGK-VILGGPMMG------------NTQYTTQAASTK 348

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           GT+ ++ +           R+        C +C  C E     ++ +   +   + K + 
Sbjct: 349 GTSGILCLSEEK------ARIPEPTA---CLRCGRCTEVCPAFLQPLY--ISANSLKGDF 397

Query: 376 DLLYEV--SKNIEGRT---ICALGDAAAWPIQGLIKNFRPLIEER 415
           D   E      IE  +   IC     A  P+   I+N +  I+ +
Sbjct: 398 DRAEEHRALDCIECGSCSFICP----ARRPLVESIRNAKRQIQAK 438


>gi|323205623|gb|EFZ90586.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
          Length = 590

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|322622924|gb|EFY19766.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
          Length = 586

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|296329171|ref|ZP_06871672.1| electron transport complex protein RnfC [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296153527|gb|EFG94344.1| electron transport complex protein RnfC [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 441

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 134/384 (34%), Gaps = 71/384 (18%)

Query: 29  WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI    E  +  +++ ++  G+ G GGA F T +K +  P    D    L++N  
Sbjct: 112 WAELSKIENWEEADKKALLDIIREKGIVGIGGATFPTHVKLNPPPNTQLDS---LILNGA 168

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P +++EG  I    +     ++ +        ES++ A +    
Sbjct: 169 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPNVYVGIEDNKPEAIESMRKATE---- 224

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++S+  ++         P+ VG+    
Sbjct: 225 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 265

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   +  G               K+ ++SG  +  P  V+ ++   F  
Sbjct: 266 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNVKVAIGTPFSY 314

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           +++          + +  ++ GG  +    A     A +            GT+ ++ + 
Sbjct: 315 ILDNCG----INREEMARLVMGGPMMGL--AQMTEDATV----------IKGTSGLLALT 358

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
                          YK ++C  C+ C       +   + +RL      +      + + 
Sbjct: 359 NEE---------MRPYKTKACISCSKCVSACPMGLAPLMFDRLAAAKEYEEMAA--HNLM 407

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 408 DCIECGS-CAYICPANRPLAESIK 430


>gi|322667964|gb|EFY64124.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
          Length = 582

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|238911689|ref|ZP_04655526.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 644

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|291514609|emb|CBK63819.1| electron transport complex, RnfABCDGE type, C subunit [Alistipes
           shahii WAL 8301]
          Length = 443

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 126/386 (32%), Gaps = 71/386 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            +G   ++ + R     + K+       II ++K +G+ G GGA F T +K S  P   +
Sbjct: 94  REGDDWAEGIDRSD--ALVKVCPFSAQEIIAKIKDAGIVGMGGATFPTHVKLSVPPGKKA 151

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++N  E EP    D   M      L+ G  I   A+G   A+I +         
Sbjct: 152 EC---VIINGVECEPYLTSDHRTMLEHGEELVVGVTILMKAVGVGKAYIGIENNKPDAIA 208

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L        A+G  G          I V      Y  G E  L+ ++ G++  P   P 
Sbjct: 209 HLTK-----IAAGYKG----------IEVVPLKVMYPQGGEKQLIAAVTGRQVPPP--PA 251

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            P +VG       V N  +   V   +           +      ++ +++G  V  P  
Sbjct: 252 LPIDVG-----AVVCNASTTVAVYQAVL----------KNKPLIERVVTVTGKSVKEPKN 296

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +   M      LIE   G           VI GG  +    A     + +          
Sbjct: 297 LLTRMGTPISALIEAAGGLPGDAGK----VINGGPMMG--RAMVNLDSPVTK-------- 342

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQ 371
             G + + VM       +   +         C +C  C       +    + ++ +    
Sbjct: 343 --GCSGITVMSGRDAQRREATQ---------CIKCAKCVSACPMGLEPYYLSKMTQKKGW 391

Query: 372 KREIDLLYEVSKNIEGRTICALGDAA 397
             E++ L  ++  IE    C    + 
Sbjct: 392 -DELEALM-ITSCIE----CGCCQST 411


>gi|256018178|ref|ZP_05432043.1| electron transport complex protein RnfC [Shigella sp. D9]
 gi|332279226|ref|ZP_08391639.1| electron transport complex protein rnfC [Shigella sp. D9]
 gi|332101578|gb|EGJ04924.1| electron transport complex protein rnfC [Shigella sp. D9]
          Length = 565

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|62180045|ref|YP_216462.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|75483500|sp|Q57PI0|RNFC_SALCH RecName: Full=Electron transport complex protein rnfC
 gi|62127678|gb|AAX65381.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322714515|gb|EFZ06086.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 704

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 129/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L  K+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTEKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVAEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|322658697|gb|EFY54955.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
          Length = 570

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|291436112|ref|ZP_06575502.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
 gi|291339007|gb|EFE65963.1| NADH dehydrogenase I chain F [Streptomyces ghanaensis ATCC 14672]
          Length = 306

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 55/101 (54%), Gaps = 1/101 (0%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +   +  +   SL D  + G +  + +    G   +I EV  SGL GRGGA F TG KW 
Sbjct: 204 LLGRIGVVYPASLDDYRAHGGYAALRRAFALGPAGVIREVTDSGLVGRGGAAFPTGRKWQ 263

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEG 108
                  DRPHYLV NADESEPGT KDR IM  +P+   +G
Sbjct: 264 ATASRP-DRPHYLVCNADESEPGTFKDRVIMEGDPYAWRDG 303


>gi|294678805|ref|YP_003579420.1| electron transport complex protein RnfC [Rhodobacter capsulatus SB
           1003]
 gi|17380290|sp|Q52716|RNFC_RHOCA RecName: Full=Electron transport complex protein rnfC; AltName:
           Full=Nitrogen fixation protein rnfC
 gi|435525|emb|CAA51399.1| rnfC [Rhodobacter capsulatus]
 gi|1905810|emb|CAA72670.1| RnfC protein [Rhodobacter capsulatus]
 gi|294477625|gb|ADE87013.1| electron transport complex protein RnfC [Rhodobacter capsulatus SB
           1003]
 gi|742355|prf||2009377B rnfC protein
          Length = 519

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 120/334 (35%), Gaps = 64/334 (19%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
            + I  +V A+G+ G GGA F + +K +   K        L++N  E EP    D  +MR
Sbjct: 135 PEEIAAQVAAAGIVGMGGATFPSAVKLNLRAKYD---LTTLIINGAECEPYLTCDDRLMR 191

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                + +G  I + A+G    F+ +     +  E++               N  LGY  
Sbjct: 192 ERAEEIADGIGIMARALGVKQVFVAIESNKPQAIEAMTR------------YNRALGYTF 239

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I V      Y  G E  L++ + G++   R      A++G+      V+N+ +   V  
Sbjct: 240 KIHVV--PTQYPMGSEKHLVKMITGQETPARA---LTADLGV-----VVHNIATAHAVHL 289

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +R G    +          +  ++SGH +  P  +   +     E+I  HCGG     D
Sbjct: 290 AVRYGEPLIA----------RTVTVSGHGIRRPANLRVLIGTPVSEII-AHCGGFTEEPD 338

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
            LL    GG                       MG  +    V V+  +  I+      + 
Sbjct: 339 RLLL---GGP---------------------MMGMPIQNPRVPVVKGTNGILALTAAETP 374

Query: 339 FYKHESCGQCTPCREGTGWMMRVME---RLVKGI 369
             K   C +C  C +G    +   E   R+  G 
Sbjct: 375 EAKTMPCIRCGRCVQGCPVGLTPFELNARIHAGD 408


>gi|291563596|emb|CBL42412.1| electron transport complex, RnfABCDGE type, C subunit
           [butyrate-producing bacterium SS3/4]
          Length = 442

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 132/381 (34%), Gaps = 66/381 (17%)

Query: 5   QDRIFTNLYGLQG---KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + R+  N   +Q    ++ ++  +   +       +  ++ I N VK +G+ G GGAGF 
Sbjct: 84  EPRLVANGAIVQSIIVENDNEYTAIEGFGEKRDYTKLSKEEIRNIVKEAGIVGLGGAGFP 143

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           T +K +       D    ++VNA E EP    D  +M  +P  LI G  +          
Sbjct: 144 TNVKLAPKDDNAIDH---IIVNAAECEPYLTSDYRLMMEQPERLIGGIKVMLSMFPNAKG 200

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLES 181
            I +        + L+  V +               +  I V      Y  G E  L+ +
Sbjct: 201 VIGIEENKPEAIKLLEGLVKD---------------EPKISVCPLKTKYPQGGERFLIYA 245

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           + G +         PA+ G       V+NV+++  +   +                  K+
Sbjct: 246 VTGGREISSAM--LPADAG-----CIVDNVDTVISIYNAVCESTPLIR----------KI 288

Query: 242 FSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            +++G  V  P   +  + + + E++E   G      +    +I GG  +    A     
Sbjct: 289 ITVTGDAVKNPQNFQVPLGMCYREILEAAGG----FKEEPEKMISGGPMMG--QALFSLD 342

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +             ++A+    +     +             C +C  C +       
Sbjct: 343 IPV----------MKNSSALTCFTKD----QVAAN-----PESPCIRCGRCIDVCP--EH 381

Query: 361 VMERLVKGIAQKREIDLLYEV 381
           ++ +++ G A++ ++ L  ++
Sbjct: 382 IVPQIMMGAAERNDLALFEKL 402


>gi|51246896|ref|YP_066780.1| electron transfer protein (PduS) [Desulfotalea psychrophila LSv54]
 gi|50877933|emb|CAG37773.1| probable electron transfer protein (PduS) [Desulfotalea
           psychrophila LSv54]
          Length = 447

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 107/325 (32%), Gaps = 54/325 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +D ++  +  +G+ G GGAGF   +K+         +   ++ N  E EP    D+ I
Sbjct: 3   MNKDSLLRSILDAGIVGEGGAGFPAHVKYDT-------QVDTVIANGCECEPLLHTDQHI 55

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR     ++          GA    I ++ ++    +     ++              G 
Sbjct: 56  MRTRAADIVVAMQAIVSVTGATRGVIGIKSKYTEIAKIFADCIE------------GTG- 102

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              + +      Y  G+E AL+  + GK   P      P +VG       V NV ++A V
Sbjct: 103 ---LELAQLDNFYPAGDEQALVYEVTGKTIPP---LGLPKDVG-----AVVANVGTLAEV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              +           +      K+ +++G V  P  +   +     E +  HCGG     
Sbjct: 152 AAAI-----------KGTPLTHKIVTVTGDVGSPAVIRVPLGTKMSECL-AHCGGSTVAD 199

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                 I GG          M   +   +          T  +IV+ R   +     R  
Sbjct: 200 P---IYILGGP--------MMGRMVDSEEDFATKMVTKTTGGLIVLPRGHYLHVMASRDI 248

Query: 338 VFYKHESCGQCTPCREGTGWMMRVM 362
              + ++   C  CR  T    R +
Sbjct: 249 HTMERQAASTCIQCRLCTDLCPRYL 273


>gi|323224588|gb|EGA08865.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323254810|gb|EGA38608.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
          Length = 552

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323211028|gb|EFZ95887.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323237790|gb|EGA21849.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323266729|gb|EGA50216.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 595

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323198190|gb|EFZ83299.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
          Length = 557

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|322620523|gb|EFY17385.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322685564|gb|EFY81560.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
          Length = 569

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|322650862|gb|EFY47253.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
          Length = 559

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|300927478|ref|ZP_07143191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 182-1]
 gi|300416582|gb|EFJ99892.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 182-1]
          Length = 575

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSTNELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|291550297|emb|CBL26559.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           torques L2-14]
          Length = 439

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 118/358 (32%), Gaps = 63/358 (17%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           ++ V  + E  R+ IIN++  +G+ G GGAGF T +K S       D+  Y++ N  E E
Sbjct: 110 YEPVKPLEEMTREEIINKIGDAGIVGMGGAGFPTKVKLS---PKEPDKIEYIIANCAECE 166

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M      L+ G  +             V        E LQ AV        
Sbjct: 167 PYITADYRRMLEYTEDLVSGMKVILSLFPNARGVFAVEDNKKDCIEKLQKAVAG------ 220

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                    +  I V      Y  G E  L+ ++  +     +    PA+ G       V
Sbjct: 221 ---------EPRIDVKALMTKYPQGAERQLIYAVTKRAINSTM---LPADAG-----CIV 263

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NVE++  +   + +G               ++ ++SG  V  P        I   EL+E
Sbjct: 264 DNVETLIGIHNAVIKG----------KPLMERVVTVSGDAVEKPGNFMAPFGINHRELVE 313

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG----LKEMGSGLGTAAVIVM 323
              GG++     L   I GG  +    A     A +        L +      +     +
Sbjct: 314 -AAGGLKAEPQKL---ISGGPMMGF--AMVTMDAPVTKTSSSILLFKEDVVAKSLETACI 367

Query: 324 DRSTDI-----IKAIWRLSVFYKHE-----------SCGQCTPCREGTGWMMRVMERL 365
           +    +          RL+ F K +            C +C  C        ++ + +
Sbjct: 368 NCGRCVEICPSRIIPSRLADFSKRKDEASFVAWNGLECVECGSCSYVCPAKRQLKQAI 425


>gi|261258339|ref|ZP_05950872.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. FRIK966]
          Length = 589

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISMRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|323232168|gb|EGA16274.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
          Length = 561

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|301329557|ref|ZP_07222340.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 78-1]
 gi|300844326|gb|EFK72086.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 78-1]
          Length = 576

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSTNELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|291334209|gb|ADD93876.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
          Length = 126

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 59/117 (50%), Positives = 78/117 (66%), Gaps = 2/117 (1%)

Query: 109 CVIASFAIGAHCAFIYVRGEFI-RERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHG 166
            +I+S+AIGA   + Y+RGEFI  +      AV E Y    +G N  +    +DI+   G
Sbjct: 1   MLISSYAIGASVGYNYLRGEFIGDQWIVFNKAVKEAYKYNFIGKNILRSNLCIDIVPLIG 60

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
           AGAYI GEETA+LES+EGK+G PR+KPPFPA  GLYG PT +NN E++A VP I++ 
Sbjct: 61  AGAYIVGEETAMLESIEGKRGMPRIKPPFPAVQGLYGKPTIINNTETLATVPYIIKM 117


>gi|304316325|ref|YP_003851470.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777827|gb|ADL68386.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 441

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 117/321 (36%), Gaps = 62/321 (19%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
              + I   V+ +G+ G GGA F T +K +  P    D    +++N  E EP    D  +
Sbjct: 122 LKPEEIRQIVRDAGIVGMGGAMFPTAVKLNPPPDKKIDI---VILNGAECEPYLTADHRL 178

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M  +P  ++ G +    A+GA   ++ +        + ++ A  E               
Sbjct: 179 MLEKPVDIVHGLLAIMKALGASKGYVGIEDNKQDAIKEIRKACKE--------------- 223

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              + V      Y  G E  +++++ G +  P  K   PA++G+      V+NV +   +
Sbjct: 224 YAGVEVAVLKTKYPQGSEKHIIKAITG-REIPSGK--LPADIGV-----VVDNVGTAFAI 275

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              ++ G               ++ +++G  +  P  +   +   F ELIE  CGG +G 
Sbjct: 276 AEAIKFG----------KPLIERVVTVTGEGIMTPKNLRVKIGTPFRELIE-CCGGFKGI 324

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 VI GG  +    A       +            GT+ ++V+      +K     
Sbjct: 325 PGK---VISGGPMMGI--AQYSIDVPV----------IKGTSGILVLPEDRIALK----- 364

Query: 337 SVFYKHESCGQCTPCREGTGW 357
                 + C +C  C +    
Sbjct: 365 ----DPKPCIKCARCVDACPM 381


>gi|322616074|gb|EFY12990.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322628769|gb|EFY25554.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631479|gb|EFY28237.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638814|gb|EFY35509.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322654536|gb|EFY50857.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322671624|gb|EFY67745.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|323221947|gb|EGA06338.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323234339|gb|EGA18426.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323260352|gb|EGA43970.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 562

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|300950446|ref|ZP_07164365.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 116-1]
 gi|300450223|gb|EFK13843.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 116-1]
          Length = 496

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 33  IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 85

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 86  DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 145

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 146 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 187

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 188 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 232

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 233 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 275

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 276 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLFWFSKGQQH 328

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 329 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 362


>gi|167746962|ref|ZP_02419089.1| hypothetical protein ANACAC_01674 [Anaerostipes caccae DSM 14662]
 gi|167653922|gb|EDR98051.1| hypothetical protein ANACAC_01674 [Anaerostipes caccae DSM 14662]
          Length = 438

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 107/322 (33%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  RD ++  +K +G+ G GGAGF T +K   +         Y++VN  E EP    D  
Sbjct: 117 DMTRDEVLAAIKDAGIVGLGGAGFPTHVK---LAPKDPGAIEYIIVNGAECEPYITGDYR 173

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           IM   P  L+EG  I           I V          +   V                
Sbjct: 174 IMMETPEVLVEGLNIVLDLFPKAKGIIAVEDNKKDAIAKVSDCVKG-------------- 219

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I V      Y  G E +L+ +  G+     +    PA+ G       V+NV +I  
Sbjct: 220 -DARISVAELKTKYPQGAERSLIYATTGRAINSSM---LPADAG-----CIVDNVATIVA 270

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   ++ G   +           ++ +++G  +  P  +         ELIE   G    
Sbjct: 271 VKDAVKEGKPLFQ----------RVVTVTGDAIESPKNLLVRTGTNVSELIEAAGG---- 316

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  VI GG          M G  M    +  + +    ++++   +  D + A+  
Sbjct: 317 FKGQPEKVISGGP---------MMGMAMFTTDVPAVKTF---SSLLAFTK--DPVSAV-- 360

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                +  +C  C  C      
Sbjct: 361 -----EPSNCINCGRCVSVCPQ 377


>gi|333018895|gb|EGK38188.1| electron transport complex protein rnfC [Shigella flexneri K-227]
          Length = 644

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|322646614|gb|EFY43122.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
          Length = 565

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGDAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  ++  +    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|218548775|ref|YP_002382566.1| electron transport complex protein RnfC [Escherichia fergusonii
           ATCC 35469]
 gi|226735446|sp|B7LQP1|RNFC_ESCF3 RecName: Full=Electron transport complex protein rnfC
 gi|218356316|emb|CAQ88934.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia fergusonii ATCC 35469]
          Length = 726

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIERDGWLDYRN---HSREELIARIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVKHLLTDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + + C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|301029281|ref|ZP_07192385.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 196-1]
 gi|299877809|gb|EFI86020.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 196-1]
          Length = 520

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 54  IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 106

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 107 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 166

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 167 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 208

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 209 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 253

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 254 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 296

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 297 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 349

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 350 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 383


>gi|300854322|ref|YP_003779306.1| putative electron transport complex protein RnfC [Clostridium
           ljungdahlii DSM 13528]
 gi|300434437|gb|ADK14204.1| predicted electron transport complex protein RnfC [Clostridium
           ljungdahlii DSM 13528]
          Length = 457

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 102/325 (31%), Gaps = 61/325 (18%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
               E     ++  ++ +G+ G GGA F   +K +  P    D     ++N  E EP   
Sbjct: 114 RNWKELSVKEMLGIIREAGIVGMGGATFPVHVKLAPPPDKKVD---VFILNGAECEPYLT 170

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D   M      ++ G  I    +    AF+ +     +  E+++ A +           
Sbjct: 171 ADYRSMLENSDKVVAGVQIIMKILNVEKAFVGIEDNKPKAIEAMKKAFEGTK-------- 222

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                   + V      Y  G E  L+  L G++         PA+VG       V NV 
Sbjct: 223 --------VQVVGLPTKYPQGAEKMLINVLTGREV---PSGGLPADVGA-----VVQNVG 266

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           +   +   + RG                     G +  P  +   +  TF + I   CGG
Sbjct: 267 TCIAISDAVERGIPLIQRVTTI---------SGGAIKEPKNILVRIGTTFKDAI-DFCGG 316

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
            +      + +I GG  +    A       +            G++ ++ + ++      
Sbjct: 317 FKEEP---VKIISGGPMMGF--AQSNLDIPI----------MKGSSGILGLTKND----- 356

Query: 333 IWRLSVFYKHESCGQCTPCREGTGW 357
                   K  SC +C  C +    
Sbjct: 357 ----VNDGKESSCIRCGRCLKACPM 377


>gi|325264019|ref|ZP_08130752.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium
           sp. D5]
 gi|324031057|gb|EGB92339.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium
           sp. D5]
          Length = 439

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 108/336 (32%), Gaps = 67/336 (19%)

Query: 27  GHWDNVDK-----ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           G ++  ++     + E  RD +I  +  +G+ G GGAGF T +K S       ++  Y++
Sbjct: 103 GEYEEAERSPIRPLEEMTRDEVIGMIGEAGIVGMGGAGFPTKVKLS---PKEPEKIDYII 159

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
            N  E EP    D   M      L+ G  I             +        E L+ AV 
Sbjct: 160 ANCAECEPYITADYRRMLENTEELVSGMKIVLSLFENAKGIFGIEDNKKDCIEKLKEAVK 219

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
           +               +  + V      Y  G E  L+ ++  +     +    PA+ G 
Sbjct: 220 D---------------EPRMEVKVLQTKYPQGAERQLIYAVTKRAINSSM---LPADAG- 260

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSI 260
                 V+NVE++  +   + +G               ++ ++SG  V+ P      +  
Sbjct: 261 ----CIVDNVETLIGIHHAVAKG----------RPLTERVVTVSGDAVSNPGNFLVLLGT 306

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
              EL+E   G       +   VI GG  +    A       +              +++
Sbjct: 307 NQQELVEAAGG----FKADPQKVISGGPMMGF--AMMTLDTPVTKTS----------SSI 350

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           +              +    +  +C  C  C E   
Sbjct: 351 LAFTED---------IVAKSQTTACINCGRCVEVCP 377


>gi|313157095|gb|EFR56525.1| electron transport complex, RnfABCDGE type, C subunit [Alistipes
           sp. HGB5]
          Length = 447

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 116/371 (31%), Gaps = 71/371 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           + + +        II  +K +G+ G GGA F T +K S  P   ++    L++N  E EP
Sbjct: 112 ETLVRECALSSAEIIARIKDAGIVGMGGATFPTHVKLSVPPGRKAE---ALIINGVECEP 168

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D   M      L+ G  I   AI    A+I +          L+       A G  
Sbjct: 169 YLTSDHRTMLEHGEELLVGVTILMKAIAVEKAYIGIENNKPDAIAHLRK-----LAEGYK 223

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
           G          I V      Y  G E  L+ ++ G++  P   P  P +VG       V 
Sbjct: 224 G----------IEVVPLKVKYPQGGEKQLIAAVTGREVPPP--PALPIDVG-----AVVC 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           N  +   V   ++          +      ++ +++G  V  P  +   M      L+E 
Sbjct: 267 NASTTYAVYQAVQ----------KNKPLIERVVTVTGKGVKEPKNLLTRMGTPISALLEA 316

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             G           VI GG  +    A     + +            G + + VM     
Sbjct: 317 AGGLPADAGK----VINGGPMMG--RAMVNLDSPVTK----------GCSGITVMSGRDA 360

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVSKNIE 386
           + +             C +C  C       +    + ++ +        D L E    + 
Sbjct: 361 VRREA---------SQCIKCAKCVAACPMGLEPYYLSKMTQKKGW----DALEE---QMI 404

Query: 387 GRTI-CALGDA 396
              I C    A
Sbjct: 405 TSCIECGCCQA 415


>gi|306819984|ref|ZP_07453635.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304552020|gb|EFM39960.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 448

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 98/326 (30%), Gaps = 60/326 (18%)

Query: 35  ILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           I E  ++ ++  VK  GL G GGA F T +K +       D    +++N  E EP    D
Sbjct: 117 IEELSKERLLEIVKDIGLVGMGGATFPTHVKLNPPKDKVVD---AVILNGAECEPYLTAD 173

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
             +M  E   +++G       +     +I +        E++                 +
Sbjct: 174 HRLMLEETKDVVDGLRAILKILSVENGYIGIEDNKPDCIEAVTK---------------E 218

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                +I V      Y  G E  L+    G++         PA+ G       V+NV + 
Sbjct: 219 ASKYPNIKVVTLKTKYPQGAEKQLINVCTGREV---PSGGLPADAG-----AVVDNVATA 270

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           A +   LR G                     G +  P  V   +   + ++I    G   
Sbjct: 271 AQIAKSLRTGLPLIERI---------CTVTGGAIANPKNVMFKIGTLYSDIINMTGG--- 318

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              +    +I GG  +    A                 +  GT+ ++        I  + 
Sbjct: 319 -FKEEPKKIISGGPMMGVALASV--DVP----------ANKGTSGILCFTEKEAHIDDMQ 365

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMR 360
                     C +C  C       + 
Sbjct: 366 N---------CIRCAKCVGVCPAFLE 382


>gi|170768759|ref|ZP_02903212.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           albertii TW07627]
 gi|170122307|gb|EDS91238.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           albertii TW07627]
          Length = 740

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIPRDGWVDYR---SRSREALIERIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + N+ +   V   +  G               ++ +++G  +  P  
Sbjct: 265 RSSDIGV-----LMQNIGTAYAVKRAVIDG----------EPITERVVTLTGEAITRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVKHLLTDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSASELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|333005861|gb|EGK25377.1| electron transport complex protein rnfC [Shigella flexneri K-272]
          Length = 620

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 86  IDADGEDCWIPRDGWVDYR---SRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 138

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 139 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 198

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 199 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 240

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 241 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 285

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 286 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 328

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 329 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLLPQQLYWFSKGQQH 381

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 382 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 415


>gi|206575962|ref|YP_002238213.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           pneumoniae 342]
 gi|226735447|sp|B5XWP9|RNFC_KLEP3 RecName: Full=Electron transport complex protein rnfC; AltName:
           Full=Nitrogen fixation protein rnfC
 gi|206565020|gb|ACI06796.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           pneumoniae 342]
          Length = 753

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 130/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG K     +  S
Sbjct: 110 IDADGEDRWIERDGWSDYQ---LRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGS 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     +++G  I +  +      I +     +   
Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVDGIRILAHILQPDEVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +                I +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   +   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAIKRAVIDGEPLT----------ERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                      +
Sbjct: 310 VWARLGTPVRHLLNDAGFCASAEP----MVIMGGPLMGF--------------------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
             G    +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 346 LPGLDVPVVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|300959104|ref|ZP_07171191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 175-1]
 gi|300314283|gb|EFJ64067.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 175-1]
          Length = 468

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 3   IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 55

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 56  DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 115

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 116 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 157

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 158 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 202

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 203 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 245

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 246 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLFWFSKGQQH 298

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 299 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 332


>gi|300871307|ref|YP_003786180.1| NADH dehydrogenase [Brachyspira pilosicoli 95/1000]
 gi|300689008|gb|ADK31679.1| NADH dehydrogenase [Brachyspira pilosicoli 95/1000]
          Length = 378

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 124/348 (35%), Gaps = 39/348 (11%)

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
             ++    L++NA        KD+  + + PH +++  ++ +  +      I +R  +  
Sbjct: 61  SKNNDNQSLIINAYSFGYLVFKDKFFIDNNPHLILDSAILIAKILNIKNIDILIRSYY-- 118

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              + +  ++    +  L    K+  +++I ++          E   +  +E      R 
Sbjct: 119 ---NKETLINAIVEAEDL---YKIESEININIYDENNF----RENINIYFIE------RQ 162

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
           K                 ++E++         G   +S +G EN++GT L S SG +   
Sbjct: 163 KYAL--------------DLETVIQFGYFAHMGLENFSKYGNENHKGTCLISFSGDIPNV 208

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
              E     +F+E+I+    G     +++  V   G          +    + YD +   
Sbjct: 209 NLHEFQFGSSFNEIIK--ASGYISYNNDIKCVFTNGFLNAPTTLESLSNKSLSYDEIN-- 264

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
              +G   +  +  +  +++ + ++  F K  SC  C PC  G       + +++ G + 
Sbjct: 265 ---IGNGGICFIAENRCMLRVVMKIIQFAKSISCTNCMPCNYGFNLCEYYLNKIILGKSN 321

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
             +   L    + I   + C      A  I   IK F       +++ 
Sbjct: 322 SNDYKNLVNAVEMIIKGSSCVYIYNIAKCIIETIKMFEYEFIYALEKK 369


>gi|300931505|ref|ZP_07146822.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 187-1]
 gi|300460699|gb|EFK24192.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 187-1]
          Length = 553

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 84  IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 136

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 137 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 196

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 197 MLRAVLADSN---------------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 238

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 239 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 283

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 284 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 326

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 327 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 379

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 380 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 413


>gi|154503206|ref|ZP_02040266.1| hypothetical protein RUMGNA_01030 [Ruminococcus gnavus ATCC 29149]
 gi|153796200|gb|EDN78620.1| hypothetical protein RUMGNA_01030 [Ruminococcus gnavus ATCC 29149]
          Length = 457

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 112/323 (34%), Gaps = 60/323 (18%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
                + + ++ +G+ G GGAGF T  K          R   +++N  E EP     R +
Sbjct: 10  MDMKELSSILQQNGIVGAGGAGFPTYAKL-------DQRAETIILNCAECEPLLRLHRQL 62

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           +      +++   +   A+GA    I ++  + +  E++++ +               G 
Sbjct: 63  LEKYAREIVDTFHLVGQAVGAKEVIIGIKKAYKQTIEAVESVI---------------GE 107

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
             ++ +      Y  G+E  L+  + GK  +P      P   G+      V NVE+I  V
Sbjct: 108 YPEVRLGLLDEVYPAGDEVVLIYEVTGKVVRP---GGLPIESGV-----AVFNVETIYNV 159

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
                     +    ++     KL S+   V +P TV   +  T +E++    G      
Sbjct: 160 ----------WRAMNQQTPVVDKLVSVVAEVEHPVTVRVPIGTTIEEVVALAGGTTVKDP 209

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                   GG  +  + +G                    T AV+V+ +   ++K     S
Sbjct: 210 ----VYFIGGPMMGFIGSGSQPVT-------------KTTNAVLVLPQDHYLVKRKRSKS 252

Query: 338 V---FYKHESCGQCTPCREGTGW 357
                     C QC+ C +    
Sbjct: 253 SIDMKRAAACCCQCSMCTDLCPR 275


>gi|238895009|ref|YP_002919743.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238547325|dbj|BAH63676.1| electron transport complex protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 753

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG K     +   
Sbjct: 110 IDADGEDRWIERDGWSDYQ---TRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +                I +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGEAVTRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAEP----MVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|83311714|ref|YP_421978.1| electron transport complex protein rnfC [Magnetospirillum
           magneticum AMB-1]
 gi|82946555|dbj|BAE51419.1| Electron transport complex protein rnfC [Magnetospirillum
           magneticum AMB-1]
          Length = 498

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 117/334 (35%), Gaps = 64/334 (19%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVK----ASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           DS  +  W     ++        NE+K     +G+ G GGA F + +K     +    + 
Sbjct: 102 DSDGKDEWAEPMPVIADPFAASANEIKARVAEAGIVGMGGATFPSAVKLGLGNQ---HKL 158

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             L++N  E EP    D  +MR     +++G  I + A+GA    I V     +  +SL+
Sbjct: 159 EILLLNGAECEPYLTCDDRVMREFAEQVVDGARIMAHALGAPKVIIAVEDNKPQAVDSLK 218

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           A   +                 ++ V      Y  G E  L +++ G++   R      A
Sbjct: 219 AEAAK---------------TPNVDVVGVPVQYPMGAERHLTQAVTGRETPARK---LTA 260

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           +VG+      V+NV +   V   +R G    S                G V  P  +E  
Sbjct: 261 DVGV-----VVHNVATARAVHQAVRLGRPLLSRVVT---------VSGGAVAEPKNIEVP 306

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +     EL+   CGG+         +I GG          M G  +    +       GT
Sbjct: 307 LGTRVSELL-DFCGGVSA---AAKRIISGGP---------MMGQPLPSLDVA---VVKGT 350

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPC 351
           + ++ + ++          +  +    C +C  C
Sbjct: 351 SGILALTQAE---------TNEHAPSPCIRCGSC 375


>gi|324019506|gb|EGB88725.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 117-3]
          Length = 543

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 77  IDADGEDCWIPRDGWADYR---SRRREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 129

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 130 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAIS 189

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 190 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 231

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  +  P  
Sbjct: 232 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAIARPGN 276

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 277 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 319

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + +SC +C+ C +      + + +    KG   
Sbjct: 320 -------VVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH 372

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 373 --DKATTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 406


>gi|325497183|gb|EGC95042.1| electron transport complex protein RnfC [Escherichia fergusonii
           ECD227]
          Length = 726

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIERDGWLDYRN---HSREELIARIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVKHLLTDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + + C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFSKGQLH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|157363153|ref|YP_001469920.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           lettingae TMO]
 gi|157313757|gb|ABV32856.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           lettingae TMO]
          Length = 437

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 120/346 (34%), Gaps = 74/346 (21%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
                 + +    W+ +       R+ ++  VK +G+ G GGA F T +K +       D
Sbjct: 106 DDW---EYLDHKDWEKL------SREELLEVVKKAGIVGLGGAMFPTHVKLNPPKDKKID 156

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
               L++NA E EP    D  +M  +    IEG  I    +    +F+ V    +   + 
Sbjct: 157 ---TLIINAAECEPYLTIDHRLMLEKAEDFIEGIRIVMKILQVQKSFVGVESNKLDAYKH 213

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L++         ++GS        +I V      Y  G E  L+ ++ G+K         
Sbjct: 214 LKS---------IVGSE-------EIEVKLLKTKYPQGAEKQLIYAITGRKVPV---GGL 254

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTV 254
           P +VG+      V NV+++  +   +                  +  ++SG  +N P  V
Sbjct: 255 PMDVGV-----VVQNVQTVIAIKHAVVD----------RKPLVERGLTVSGEGINKPANV 299

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
              +  T ++LIE   G           VI GG       A       +           
Sbjct: 300 IARIGTTVNQLIELAGGLKEEAER----VILGGPMTGI--AINRLDIPILK--------- 344

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            GT+ + V+ +    +            ++C +CT C       ++
Sbjct: 345 -GTSGITVLLKEKQPV-----------QKNCIRCTKCVVACPMGLQ 378


>gi|325478991|gb|EGC82092.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 441

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 124/353 (35%), Gaps = 56/353 (15%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I+ ++K +G+ G GGA F   +K+       +     +++N  E EP    D  +M++
Sbjct: 123 EEIVAKIKEAGIVGMGGAAFPAHIKYQ-----PTKPVDTVIINGAECEPYITCDDYLMKN 177

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            P  +++  V A  A+ A    + +     +  +S+ AA+++               ++D
Sbjct: 178 RPERILKALVQAMKAVDAKKGIVAIEDNKPKAYDSMIAALEKIAKEN---------SNLD 228

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +      Y  G+E  +++    ++         P +VG       V+NV ++  +   
Sbjct: 229 IEIKKLVTKYPQGDEKRIIDVCLNRQV---PSGGLPMDVG-----AIVSNVSTMNAIYEA 280

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           L      Y           ++ +++G  V  P  +       F+  IE+  G      D+
Sbjct: 281 LYMDKPLY----------ERIVTVTGKAVKSPTNMIVRCGTEFNHCIEQAGGA-----DD 325

Query: 280 LLAVIPGGSSVPCL------PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
           +  ++ GG            P  +    I+     +     +          S   ++ +
Sbjct: 326 IAKLVNGGPMCGIAQPDLNRPVEKASNCILVLASDEAKPLDVDPCIRCSRCVSVCPVELL 385

Query: 334 -WRLSVFYKHES-----------CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
              +  F   E            C +C  C         ++E +  G  Q R+
Sbjct: 386 PLYIHKFSLEERFEKAQELNIMDCIECGSCSFVCPSNRPLVEAIKFGKRQIRQ 438


>gi|326791176|ref|YP_004308997.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           lentocellum DSM 5427]
 gi|326541940|gb|ADZ83799.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           lentocellum DSM 5427]
          Length = 439

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/330 (20%), Positives = 116/330 (35%), Gaps = 64/330 (19%)

Query: 25  SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           ++  + N+ K      + +I  VK +GL G GGA F T +K S  P        Y+++N 
Sbjct: 115 AKSDYKNLTK------EELIGLVKEAGLVGMGGATFPTHVKLSTPPDK---TVEYIIING 165

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
            E EP    D  +M      +IEG  I         A I +    +   + ++       
Sbjct: 166 AECEPYLTSDHRVMLENGEEVIEGIKILLEVYKEAKAIIGIENNKMDAIKQMK------- 218

Query: 145 ASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
              +L  N++      + V      Y  G E  L+ ++  K+  P  K   P ++G    
Sbjct: 219 ---MLAKNTE-----RLEVVTLDTKYPQGSEKHLIYAIT-KREVPSGK--LPIDIG---- 263

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
              V N++S+  V   + +G          +  G         V  PC VE  +  +F E
Sbjct: 264 -CIVQNIDSMVAVCRAVTKGQPVMRRIVTVSGSG---------VKKPCNVEVKVGTSFKE 313

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++E          +  + +I GG  +    +                    GT+AV+   
Sbjct: 314 VLEYA----EWDMERTVKIIAGGPMMGIAISDVNIPV------------MKGTSAVLCFT 357

Query: 325 RSTDIIKAIWRLSVFYKHESCGQC-TPCRE 353
                 +     +    H  CG+C T C  
Sbjct: 358 DE----EVTSVPTTHCMH--CGKCVTVCPM 381


>gi|315651309|ref|ZP_07904337.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium
           saburreum DSM 3986]
 gi|315486461|gb|EFU76815.1| Na(+)-translocating NADH-quinone reductase subunit A [Eubacterium
           saburreum DSM 3986]
          Length = 448

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/272 (22%), Positives = 98/272 (36%), Gaps = 41/272 (15%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            +  +   +       +  +D I N VK +G+ G GGAGF T +K S   +   D   Y+
Sbjct: 104 KEYRTVEGFGERKDYTKLSKDEIRNIVKEAGIVGLGGAGFPTHVKLSPKNENEID---YI 160

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           +VN  E EP    D  +M  EP  +I G  I           I +     +  E L+  V
Sbjct: 161 IVNGAECEPYLTSDYRLMMEEPEKIIGGLKIILQLFPNAKGIIGIENNKPKAVEKLRELV 220

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                            +  I V      Y  G E +L+ +  G+K         PA+VG
Sbjct: 221 KN---------------ESKIEVVELYTKYPQGGERSLIYACTGRKLN---SSKLPADVG 262

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMS 259
                  V+N +++  +          Y+   +      ++ +I+G  V  P   +    
Sbjct: 263 -----CIVDNTDTVISI----------YNAVAKSTPLIRRIVTITGDAVTTPQNFKVRTG 307

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           + + ELIE   G           V+ GG  + 
Sbjct: 308 MNYQELIEAAGG----FKKEPRKVLSGGPMMG 335


>gi|283785156|ref|YP_003365021.1| electron transport complex protein [Citrobacter rodentium ICC168]
 gi|282948610|emb|CBG88201.1| electron transport complex protein [Citrobacter rodentium ICC168]
          Length = 678

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/388 (17%), Positives = 124/388 (31%), Gaps = 76/388 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +     L   RD +I  +   G+ G GGAGF TG+K     +   D+   L++NA E EP
Sbjct: 122 EGWPDYLSHSRDELITRIHQYGVAGLGGAGFPTGVKL----QGGGDKIATLIINAAECEP 177

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     ++EG  I +  +      I +     +    L+A + + +     
Sbjct: 178 YITADDRLMQDCAAEIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAH----- 232

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     DI V      Y  G    L + L GK+          +++G+      + 
Sbjct: 233 ----------DIAVRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIGV-----LMQ 274

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEK 268
           NV +   V   +  G               ++ +++G  V  P  V   +      L+  
Sbjct: 275 NVGTAWAVKRAVIDGEPLT----------ERVVTLTGEAVRRPGNVWARLGTPVRHLLND 324

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                         VI GG  +                              +V   +  
Sbjct: 325 AGFCPSAD----QMVIMGGPLMGF--TLPWLDVP------------------VVKITNCL 360

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
           +  +   +    + + C +C+ C +      + + +    KG     +    + ++  IE
Sbjct: 361 LAPSATEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH--DKATAHNIADCIE 418

Query: 387 GRTICALGDAAAWPIQG---LIKNFRPL 411
               C    A AW       L++ FR  
Sbjct: 419 ----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|288942376|ref|YP_003444616.1| RnfABCDGE type electron transport complex subunit C [Allochromatium
           vinosum DSM 180]
 gi|288897748|gb|ADC63584.1| electron transport complex, RnfABCDGE type, C subunit
           [Allochromatium vinosum DSM 180]
          Length = 504

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 92/265 (34%), Gaps = 39/265 (14%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
            H   V+       + I   V A+G+ G GGA F + +K     +      H LV+N  E
Sbjct: 111 DHIQGVEDPFALAPEEIAARVAAAGIVGLGGATFPSAVKLDLRKRYA---VHTLVINGAE 167

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EP    D  +MR    ++I+G  + + A+G     I +       +             
Sbjct: 168 CEPYLTCDDRLMRERAESVIDGIRLMARALGVSRIVIGIEDNKPEAQA------------ 215

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                      D DI +      Y  G E  L+++L G++   R      A++G+     
Sbjct: 216 ---AMAVAASIDPDIRIARLPTRYPMGSEKHLVQTLTGRETPARG---LTADIGV----- 264

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            V+N  +   V   LR G    +                G +  P  V   +     +LI
Sbjct: 265 VVHNPATAFAVHEALRLGHPLVARVVT---------VSGGAIARPANVRVPLGTRVQDLI 315

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVP 291
             HCGG +     L   I GG  + 
Sbjct: 316 -AHCGGFKDEPARL---ISGGPMMG 336


>gi|152970518|ref|YP_001335627.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955367|gb|ABR77397.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 715

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG K     +   
Sbjct: 110 IDADGEDRWIERDGWSDYQ---TRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +                I +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGEAVTRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAEP----MVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSANEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|170288502|ref|YP_001738740.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           sp. RQ2]
 gi|170176005|gb|ACB09057.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           sp. RQ2]
          Length = 435

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 112/324 (34%), Gaps = 65/324 (20%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             ++ I+  +K +G+ G GGA F T +K S  P+   D    L+VN  E EP    D  +
Sbjct: 117 MSKEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVD---TLIVNGAECEPVLTIDHRL 173

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M      +++G +I    +G   A + V    +    +L+                  GY
Sbjct: 174 MLERAEDILQGILIMMKVLGVQEAVVGVESNKMDAYHNLKKVFK--------------GY 219

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
            VD  V      Y  G E  L+ ++ G +  PR     P +VG+      V NV +   V
Sbjct: 220 PVD--VALLKTKYPQGAEKQLIYAITG-RVVPRGG--LPMDVGV-----VVQNVGTCVAV 269

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +  G               +  ++SG  V  P  +   +     ++I  +CGGI   
Sbjct: 270 KEAVVDGKPLV----------ERGMTVSGDAVKNPKNLVVRIGTPVKDVI-DYCGGIDEN 318

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            +    VI GG  +    +       +            GT+ +                
Sbjct: 319 TER---VILGGPMMGI--SITNLDIPV----------MKGTSGITAFLPE---------- 353

Query: 337 SVFYKHESCGQCTPCREGTGWMMR 360
                 + C +C+ C +     ++
Sbjct: 354 -KPQPQKPCIRCSECVQVCPMNLQ 376


>gi|409554|gb|AAA53584.1| NADH ubiquinone oxidoreductase subunit [Escherichia coli str. K-12
           substr. W3110]
          Length = 112

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/93 (51%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 16  QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           Q   L +  S+  ++   K L     D IIN+VK +GL+GRGGAGFSTG+KWS MPK  S
Sbjct: 20  QPVWLDEYRSKNGYEGRRKALTGLSPDEIINQVKDAGLKGRGGAGFSTGLKWSLMPKDES 79

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIE 107
               YL+ NADE EPGT KDR +M   PH L+E
Sbjct: 80  MNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVE 112


>gi|148269816|ref|YP_001244276.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           petrophila RKU-1]
 gi|147735360|gb|ABQ46700.1| electron transport complex, RnfABCDGE type, C subunit [Thermotoga
           petrophila RKU-1]
          Length = 435

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 112/324 (34%), Gaps = 65/324 (20%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             ++ I+  +K +G+ G GGA F T +K S  P+   D    L++N  E EP    D  +
Sbjct: 117 MSKEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVD---TLIINGAECEPVLTIDHRL 173

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M      +++G +I    +G   A + V    +    +L+                  GY
Sbjct: 174 MLERAEDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLKKVFK--------------GY 219

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
            VD  V      Y  G E  L+ ++ G +  PR     P +VG+      V NV +   V
Sbjct: 220 PVD--VALLKTKYPQGAEKQLIYAITG-RVVPRGG--LPMDVGV-----VVQNVGTCVAV 269

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +  G               +  ++SG  V  P  +   +     ++I  +CGGI   
Sbjct: 270 KEAVVDGKPLV----------ERGMTVSGDAVKNPKNLVVRIGTPVKDVI-DYCGGIDEN 318

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            +    VI GG  +    +       +            GT+ +                
Sbjct: 319 TER---VILGGPMMGI--SITNLDIPV----------MKGTSGITAFLPE---------- 353

Query: 337 SVFYKHESCGQCTPCREGTGWMMR 360
                 + C +C+ C +     ++
Sbjct: 354 -KPQPQKPCIRCSECVQVCPMNLQ 376


>gi|307823818|ref|ZP_07654046.1| electron transport complex, RnfABCDGE type, C subunit
           [Methylobacter tundripaludum SV96]
 gi|307735112|gb|EFO05961.1| electron transport complex, RnfABCDGE type, C subunit
           [Methylobacter tundripaludum SV96]
          Length = 495

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 115/351 (32%), Gaps = 62/351 (17%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           VD   +   + I   V A+G+ G GGA F T +K +   +        L++N  E EP  
Sbjct: 120 VDDPFQLNPEEISFRVGAAGIVGLGGATFPTAVKLNMGREN---HVDTLIINGSECEPYL 176

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
           C D  +M+     +I+G  +    +    A + +     +   ++ AA +          
Sbjct: 177 CCDDRLMQERAGEIIDGVRLMLHGMETEQAVVAIEDNKPQAYVAMLAAAEP--------- 227

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I V      Y  G +  L+  + GK+          + VG+     T++NV
Sbjct: 228 ------YAQIKVIQIPTRYPMGWDRQLIRYVTGKEVPV---GCRSSEVGV-----TIHNV 273

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
            +   V   +R G             G  +    G V  P  VE        EL E    
Sbjct: 274 GTAYAVHKAIRLGQPL---------LGRVVTVAGGAVKRPMNVEVPFGTLISELFEF--- 321

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                 +    +I GG          M G  + + GL  + +  G            I+ 
Sbjct: 322 -CEVDKEQTARIIMGGP---------MMGDSLPHTGLPTVKATSG------------ILA 359

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
                    + + C +C  C       +R ++  +    +  ++D   ++ 
Sbjct: 360 LTKSELKNTEEQPCIRCAGCVSVCPAGLRPLD--MANNIRINQLDAAVDLG 408


>gi|206900502|ref|YP_002250813.1| nitrogen fixation iron-sulphur protein rnfc [Dictyoglomus
           thermophilum H-6-12]
 gi|206739605|gb|ACI18663.1| nitrogen fixation iron-sulphur protein rnfc [Dictyoglomus
           thermophilum H-6-12]
          Length = 437

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 115/340 (33%), Gaps = 65/340 (19%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
              D I   ++ +G+ G GGA F T +K S  P+   D    +++N  E EP    D  +
Sbjct: 120 LSPDEIKTRIREAGIVGLGGAAFPTHVKVSPPPEKKID---TVILNGAECEPYLTIDYRL 176

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M  +P  +IEG  I  + +G     I V        E L+                    
Sbjct: 177 MLEKPELIIEGLRILMYVLGVKRGIIGVEDNKKDAVEVLKK-----------------YA 219

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D DI +      Y  G E  L++++   +  P    P             VNNV + A +
Sbjct: 220 DSDIEIVTLPTKYPQGSEKHLIKAILD-REVPSGGLP-------MDVGVVVNNVGTAAAI 271

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
               R G           +RG  +      VN P  VE  +     +LIE H GG +   
Sbjct: 272 AEHFRTGLPLI-------SRGVTVTG--EGVNSPKNVEVLIGTPVIKLIE-HAGGFK--- 318

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                    G     L  G M G  +    +       GT+ V+V               
Sbjct: 319 ---------GKPGKILFGGPMMGVAIYDLNIP---IIKGTSGVVVFPEEK---------V 357

Query: 338 VFYKHESCGQCTPCREGTGW--MMRVMER-LVKGIAQKRE 374
            +Y+   C +C  C +      M   + R + KG   + E
Sbjct: 358 EYYEPIPCVRCGKCLDVCPMGLMPTTLARYVKKGKLIEAE 397


>gi|51246885|ref|YP_066769.1| propanediol utilization protein (PduS) [Desulfotalea psychrophila
           LSv54]
 gi|50877922|emb|CAG37762.1| related to propanediol utilization protein (PduS) [Desulfotalea
           psychrophila LSv54]
          Length = 447

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 107/325 (32%), Gaps = 54/325 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +D ++  +  +G+ G GGAGF   +K+         +   ++ N  E EP    D+ I
Sbjct: 3   MNKDSLLRSILDAGIVGEGGAGFPAHVKYDT-------QVDTVIANGCECEPLLHTDQHI 55

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR     ++          GA    I ++ ++    +     ++              G 
Sbjct: 56  MRTRAADIVVAMQAIVSVTGATRGVIGIKRKYTEIAKIFADCIE------------GTG- 102

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              + +      Y  G+E  L+  + GK   P      P +VG       V NV ++A V
Sbjct: 103 ---LELVQLDNFYPAGDEQTLVYEVTGKTIPP---LGLPKDVG-----AVVANVGTLAGV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              +           +      K+ +++G+V  P  +   +     E +  HCGG     
Sbjct: 152 ADAM-----------KGTPVTHKIVTVTGNVGSPAVIRVPLGTKLSECL-AHCGGATIAD 199

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                 I GG          M   +   +          T  +I++ R   +     R  
Sbjct: 200 P---VYILGGP--------MMGRMVDSAEEFAAKVVTKTTGGLIILPRGHYLHTMASRDL 248

Query: 338 VFYKHESCGQCTPCREGTGWMMRVM 362
              + ++   C  CR  T    R +
Sbjct: 249 QSMQRQAATACIQCRLCTELCPRYL 273


>gi|288935201|ref|YP_003439260.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           variicola At-22]
 gi|288889910|gb|ADC58228.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           variicola At-22]
          Length = 719

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 129/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG K     +   
Sbjct: 110 IDADGEDRWIERDGWSDYQ---VRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     +++G  I +  +      I +     +   
Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVDGIRILAHILQPDEVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +                I +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   +   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAIKRAVIDGEPLT----------ERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                      +
Sbjct: 310 VWARLGTPVRHLLNDAGFCASAEP----MVIMGGPLMGF--------------------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
             G    +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 346 LPGLDVPVVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|303235326|ref|ZP_07321944.1| putative electron transport complex protein RnfC [Finegoldia magna
           BVS033A4]
 gi|302493640|gb|EFL53428.1| putative electron transport complex protein RnfC [Finegoldia magna
           BVS033A4]
          Length = 442

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 99/320 (30%), Gaps = 60/320 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  ++ I+  +K +G+ G GGAGF T +K   M K    +   +++N  E EP    D+ 
Sbjct: 120 QLSKEVILERIKEAGIVGLGGAGFPTHLK---MNKKPDVKIEQVILNGAECEPYLTSDQL 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M   P   I G  I    +     +I V         + Q A+     +     N    
Sbjct: 177 NMELYPQKAIGGLKIIMKLMDCDKGYIGVED-------NKQKAIGILKNAAKDEKN---- 225

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I +      Y  G+E  L+ ++ GKK     K       G+ G      N+ S   
Sbjct: 226 ----ISICSVKTKYPQGDERRLINAITGKKI---SKAQRSNERGVQGL-----NISSAMA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   +                          +  P  +   +   F +L+  +C G +  
Sbjct: 274 IYDAVVHSIPLTHRIVT---------MTGSAIKEPKNIYVPVGTKFKDLV-DYCDGFKET 323

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 ++ GG  +                   E  +   T  +I M+            
Sbjct: 324 P---YKIVVGGPMMGACQYNL------------EAPTVKTTGGIICMNEKD--------- 359

Query: 337 SVFYKHESCGQCTPCREGTG 356
           +     E C +C  C +   
Sbjct: 360 ATLASPEPCIKCAKCVDVCP 379


>gi|169824043|ref|YP_001691654.1| electron transport complex protein [Finegoldia magna ATCC 29328]
 gi|167830848|dbj|BAG07764.1| electron transport complex protein [Finegoldia magna ATCC 29328]
          Length = 442

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 99/320 (30%), Gaps = 60/320 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  ++ I+  +K +G+ G GGAGF T +K   M K    +   +++N  E EP    D+ 
Sbjct: 120 QLSKEVILERIKEAGIVGLGGAGFPTHLK---MNKKPDVKIEQVILNGAECEPYLTSDQL 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M   P   I G  I    +     +I V         + Q A+     +     N    
Sbjct: 177 NMELYPQKAIGGLKIIMKLMDCDKGYIGVED-------NKQKAIGILKNAAKDEKN---- 225

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I +      Y  G+E  L+ ++ GKK     K       G+ G      N+ S   
Sbjct: 226 ----ISICSVKTKYPQGDERRLINAITGKKI---SKAQRSNERGVQGL-----NISSAMA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   +                          +  P  +   +   F +L+  +C G +  
Sbjct: 274 IYDAVVHSIPLTHRIVT---------MTGSAIKEPKNIYVPVGTKFKDLV-DYCDGFKET 323

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 ++ GG  +                   E  +   T  +I M+            
Sbjct: 324 P---YKIVVGGPMMGACQYNL------------EAPTVKTTGGIICMNEKD--------- 359

Query: 337 SVFYKHESCGQCTPCREGTG 356
           +     E C +C  C +   
Sbjct: 360 ATLASPEPCIKCAKCVDVCP 379


>gi|291614940|ref|YP_003525097.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291585052|gb|ADE12710.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 447

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 113/325 (34%), Gaps = 61/325 (18%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
             +   G+  ++  ++ +G+ G GGA F   +K +  P+   D    LVVN  E EP   
Sbjct: 120 RDVESLGKKELLEAIQQTGISGLGGATFPAHVKLNVPPETAID---TLVVNGAECEPFLT 176

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  IM      L+ G   A  A GA  A I V         +++AA+            
Sbjct: 177 CDHRIMVERTQDLLRGIRFAMQASGAPRAVIGVEDNKPDAIAAIEAAL------------ 224

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                D  + V      Y  G E  ++ +L G++         PA++G+      VNNV 
Sbjct: 225 ---PLDGTVTVKALETKYPQGAEDTIIYALLGREI---PAGQRPASIGV-----LVNNVM 273

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCG 271
           ++A +  +L  G               ++ +++G  V  P      +      L+E+   
Sbjct: 274 TLAYLGRLLPAGEGIV----------ERVLTVAGPAVEKPGNYIVPIGTPLRFLLEQVGA 323

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                  N   +I GG  +    +       +            GT+ V+   R+    +
Sbjct: 324 -----KSNASEIILGGPMMGMTISS--LDVPVTK----------GTSGVLAFGRAQLPEE 366

Query: 332 AIWRLSVFYKHESCGQCTPCREGTG 356
           A           SC +C  C +   
Sbjct: 367 APKVY-------SCIKCGECLKVCP 384


>gi|150017309|ref|YP_001309563.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903774|gb|ABR34607.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 437

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 121/357 (33%), Gaps = 70/357 (19%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            W+N++K        +++ +K +G+ G GGA F T +K S      +      +VNA E 
Sbjct: 115 DWENLEK------KEVLDIIKNAGIVGMGGATFPTHVKLS-----PNKEVDTFIVNAAEC 163

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +M      ++ G  I    +G     I +        + ++ A        
Sbjct: 164 EPYLTADYRMMIEYADRIVTGVKIVMKTLGVSKGIIGIEDNKPEAVKVMKEAFK------ 217

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                   G  VDI        Y  G E  L++ L  ++         P +VG+      
Sbjct: 218 --------GTSVDI--VALPTKYPQGAEKMLIKVLTSREV---PSGGLPMDVGV-----V 259

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV ++  +   +  G               ++ ++SG  +  P  +   +  +F E I
Sbjct: 260 VQNVGTVIAIYDAVVNGIPIIQ----------RVTTVSGDAIKEPKNLLLRIGTSFKEAI 309

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
             +CGG     + L   I GG  +    A       +            G + ++ + + 
Sbjct: 310 -SYCGGFSKTPEKL---IMGGPMMGM--AQFSLDVPV----------IKGVSGILALSKD 353

Query: 327 TDIIKAIWRLSVFYKHESCGQCT-PCREGT-GWMMRVMERLVKGIAQKREIDLLYEV 381
                             CG+C   C  G    M+ ++    K    K E +LL  +
Sbjct: 354 ------AINSGEESPCIRCGRCVEACPMGLIPSMLSILGERHKFKEAKEEYNLLNCI 404


>gi|262044609|ref|ZP_06017664.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259038010|gb|EEW39226.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 582

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG K     +   
Sbjct: 110 IDADGEDRWIERDGWSDYQ---TRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +                I +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGEAVTRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAEP----MVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|157145890|ref|YP_001453209.1| electron transport complex protein RnfC [Citrobacter koseri ATCC
           BAA-895]
 gi|166225089|sp|A8AH10|RNFC_CITK8 RecName: Full=Electron transport complex protein rnfC
 gi|157083095|gb|ABV12773.1| hypothetical protein CKO_01641 [Citrobacter koseri ATCC BAA-895]
          Length = 705

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 66/403 (16%), Positives = 129/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +  +   + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIERDGWADYQR---RSREELITRIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +               DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLADAH---------------DIALRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGESVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVSHLLNDAGFCSSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSATEMGETPEEQGCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI---KNFRPL 411
             +    + ++  IE    C    A AW     I   + FR  
Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSSIPLVQYFRQE 439


>gi|53802977|ref|YP_115288.1| electron transport complex protein RnfC [Methylococcus capsulatus
           str. Bath]
 gi|53756738|gb|AAU91029.1| electron transport complex, C subunit [Methylococcus capsulatus
           str. Bath]
          Length = 523

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 110/361 (30%), Gaps = 64/361 (17%)

Query: 16  QGKSLS-DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            G+ L+ ++ +   +  +        D +   +  +G+ G GGA F T +K         
Sbjct: 105 DGEDLAFETEAHPDYQRLA------PDELRRIIFEAGIVGLGGAAFPTAVK----TDPGH 154

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
                L++N  E EP    D  ++RH P  ++EG  I    +G     + +  +      
Sbjct: 155 RAIDTLILNGAECEPYITCDDSLLRHFPREVLEGARILMRVLGVERCLLGIEDDMPEAIR 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
               A+ E             G   DI V      Y  G E  L+  L G++   R    
Sbjct: 215 ----ALREIQE---------TGEYQDIDVITVPALYPSGGEKQLIRILTGREVPTRG--- 258

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            PA+ G+        NV + A V   + RG            +G         +  P   
Sbjct: 259 IPADAGV-----VCQNVGTAAAVYRAVVRGEPLIERIVTVTGKG---------IRNPGNW 304

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
              +     +L+ ++ GG  G  + L   I GG  +    +      +   + +   G G
Sbjct: 305 LTRIGTPIADLV-RYSGGYSGAAERL---ILGGPMMGISLSSDALPLVKAANCVLVTGRG 360

Query: 315 LGTAAVIVMDRSTDIIKA-------------------IWRLSVFYKHESCGQCTPCREGT 355
             T     +        A                     R    Y    C +C  C    
Sbjct: 361 ETTGPKQALPCIRCGACAEVCPINLLPQQLYWYSRADNLRRVEEYHVTDCIECGCCDYVC 420

Query: 356 G 356
            
Sbjct: 421 P 421


>gi|324113403|gb|EGC07378.1| electron transporter [Escherichia fergusonii B253]
          Length = 627

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIERDGWLDYRN---HSREELIARIHQFGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L   L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTYILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVKHLLTDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   L    + + C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSASELGEPQEEQGCIRCSSCADACPADLLPQQLYWFSKGQLH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|302381047|ref|ZP_07269507.1| putative electron transport complex protein RnfC [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311094|gb|EFK93115.1| putative electron transport complex protein RnfC [Finegoldia magna
           ACS-171-V-Col3]
          Length = 442

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 99/320 (30%), Gaps = 60/320 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  ++ I+  +K +G+ G GGAGF T +K   M K    +   +++N  E EP    D+ 
Sbjct: 120 QLSKEVILERIKEAGIVGLGGAGFPTHLK---MNKKPDVKIEQVILNGAECEPYLTSDQL 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M   P   I G  I    +     +I V         + Q A+     +     N    
Sbjct: 177 NMELYPQKAIGGLKIIMKLMDCDKGYIGVED-------NKQKAIGILKNASKDEKN---- 225

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I +      Y  G+E  L+ ++ GKK     K       G+ G      N+ S   
Sbjct: 226 ----ISICSVKTKYPQGDERRLINAITGKKI---SKAQRSNERGVQGL-----NISSAMA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   +                          +  P  +   +   F +L+  +C G +  
Sbjct: 274 IYDAVVHSIPLTHRIVT---------MTGSAIKEPKNIYVPVGTKFKDLV-DYCDGFKET 323

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 ++ GG  +                   E  +   T  +I M+            
Sbjct: 324 P---YKIVVGGPMMGACQYNL------------EAPTVKTTGGIICMNEKD--------- 359

Query: 337 SVFYKHESCGQCTPCREGTG 356
           +     E C +C  C +   
Sbjct: 360 ATLASPEPCIKCAKCVDVCP 379


>gi|312898224|ref|ZP_07757615.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera
           micronuciformis F0359]
 gi|310620721|gb|EFQ04290.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera
           micronuciformis F0359]
          Length = 444

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 109/331 (32%), Gaps = 70/331 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            W  +DK        I+  +K +G+ G GGA F   +K        +      +VNA E 
Sbjct: 115 DWKELDKA------QIVERIKQAGVVGCGGATFPAHVKL-----APNKPVDTFIVNAAEC 163

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +M  E   L+ G  I   A+G    +I +          L+ A        
Sbjct: 164 EPYLTCDYRLMLEEADKLVTGVQICMKALGVSKGYIGIEDNKPEAVSKLKEAFKNV---- 219

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                       ++ V      Y  G E  L++++  ++ QP      P +VG       
Sbjct: 220 -----------PEVSVEALPTKYPQGAEKMLIKAVTDREVQP---GGLPMDVG-----CV 260

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V+NV ++  +   +  G  +            ++ +++G  +  P  +   +  +F   +
Sbjct: 261 VSNVGTVIAITDAVCHGIPFI----------ERVTTVTGDCIKEPKNLRLRIGTSFQYAV 310

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
             +CGG     D    VI GG  +    A       +            G + ++ +   
Sbjct: 311 -DYCGGFSAQPDR---VIAGGPMMGL--AQFQLDVSVAK----------GVSGILALSPE 354

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
              +            + C +C  C +    
Sbjct: 355 KCQVGV---------EDPCIRCGRCVDACPM 376


>gi|213582925|ref|ZP_03364751.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 456

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 129/397 (32%), Gaps = 79/397 (19%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
              + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   D+   L
Sbjct: 4   DRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGDDKITTL 56

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           ++NA E EP    D  +M+     ++EG  I +  +      I +     +    L+A +
Sbjct: 57  IINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVL 116

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
            + +               DI +      Y  G    L + L GK+          +++G
Sbjct: 117 ADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIG 158

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMS 259
           +      + NV +   V   +  G               ++ +++G  ++ P  V   + 
Sbjct: 159 V-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAISRPGNVWARLG 203

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
                L+                VI GG  +                             
Sbjct: 204 TPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------------- 240

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDL 377
            +V   +  +  ++  +    + +SC +C+ C +      + + +    KG     +   
Sbjct: 241 -VVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQH--DKAT 297

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
            + ++  IE    C    A AW       L++ FR  
Sbjct: 298 AHHIADCIE----CG---ACAWVCPSNIPLVQYFRQE 327


>gi|283833246|ref|ZP_06352987.1| electron transport complex protein RnfC [Citrobacter youngae ATCC
           29220]
 gi|291070882|gb|EFE08991.1| electron transport complex protein RnfC [Citrobacter youngae ATCC
           29220]
          Length = 674

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIERDGWADYR---SRSREELIARIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      + +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILLGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   +   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAIKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSASEMGETPEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKSTTHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|284118231|ref|ZP_06386764.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829467|gb|EFC33837.1| NADH-quinone oxidoreductase, F subunit [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 110

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
           T ++    +LS F++ ESCGQC PCR GT  +  +M ++ +G   + ++D L ++   ++
Sbjct: 2   TCMVGQTLKLSTFFREESCGQCPPCRIGTEHLEELMAKIEEGTGTREDLDKLLQICGFVK 61

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
           G   C L   AA  +Q  ++ FR   EE + +   C F 
Sbjct: 62  GTGYCTLVTGAAVLVQNSLRLFRHEFEEHVAK-RACPFN 99


>gi|310658706|ref|YP_003936427.1| electron transport complex protein [Clostridium sticklandii DSM
           519]
 gi|308825484|emb|CBH21522.1| Electron transport complex protein [Clostridium sticklandii]
          Length = 442

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 107/329 (32%), Gaps = 60/329 (18%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           ++ +   + ++  VK +G+ G GGA F T +K S   +   D    +++N  E EP    
Sbjct: 116 EVKDLSSEKLLEIVKNAGIVGMGGATFPTHVKLSPPKEKNID---VVILNGAECEPYLTA 172

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D  +M   P  ++ G +     +G    +I +         S+  A          G NS
Sbjct: 173 DHRLMLETPEDVVNGLLGIMKILGVEKGYIGIEDNKPDCIASVSKAAQ--------GINS 224

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
                  I V      Y  G E  L+ +   ++         P + G+      VNNV +
Sbjct: 225 -------IEVVGLRTKYPQGAEKQLIYACTNREV---PSGGLPMDAGV-----VVNNVAT 269

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A +   +R G                     G ++ P  +   +   + E+I++  G  
Sbjct: 270 AAQLAKTIRTGMPLIDRI---------CTVTGGAISNPKNILIKIGTLYSEIIDQAGG-- 318

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                    VI GG  +                   E+ +  G++ ++         K +
Sbjct: 319 --FKTQPSKVISGGPMMGI------------AQFTLEVPATKGSSGILCFTYDEAKAKEV 364

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVM 362
                      C +C  C       ++ +
Sbjct: 365 QN---------CMRCAKCVNICPANLQPL 384


>gi|160932756|ref|ZP_02080145.1| hypothetical protein CLOLEP_01597 [Clostridium leptum DSM 753]
 gi|156867830|gb|EDO61202.1| hypothetical protein CLOLEP_01597 [Clostridium leptum DSM 753]
          Length = 444

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 122/357 (34%), Gaps = 63/357 (17%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           W+ ++    +    ++   +ASGL G GGAGF   +K +        +   L++N  E E
Sbjct: 111 WEGLEPPKVETHQDLVKAARASGLVGLGGAGFPAHIKLNV---PEGRKIDTLIINVAECE 167

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D          ++ G  +    +      I V        + L    +  Y+   
Sbjct: 168 PYITADHREALENSWDVLSGIYLVKDLLNIDRTLIAVEKNKPDVIKVLS---EIAYSDTR 224

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
              N        + V      Y  G E  L+++  G++  P      P++VG       V
Sbjct: 225 DPEN-------KVRVLPLKARYPQGAEKVLVQACTGRRIGP---GKLPSDVG-----CLV 269

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIE 267
            NV SIA +   L+ G    S          K  ++ G  V  P  V   +    +++IE
Sbjct: 270 MNVTSIAFLSRYLKTGMPLVS----------KRITVDGSAVMEPKNVIVPLGTPIEKVIE 319

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
             CGG R            G     L  G M G  +D D L  +       A++      
Sbjct: 320 -FCGGYR------------GDPAKILMGGPMMGLALDSDALPVL---KQNNAILAFQEQD 363

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGW--MMRVMERLVKGIAQKREIDLLYEVS 382
            ++ A           +C  C  C EG     M   + R V      ++ID L ++ 
Sbjct: 364 AVLPA---------PTACIHCGRCVEGCPMHLMPPEISRAV----TTKDIDQLQKLG 407


>gi|146311475|ref|YP_001176549.1| electron transport complex protein RnfC [Enterobacter sp. 638]
 gi|145318351|gb|ABP60498.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           sp. 638]
          Length = 673

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++       + R  W+       + R+ +I  +   G+ G GGAGF TG K     +   
Sbjct: 110 IEPDGEDRWIDREGWNEYR---AQSREALIERIHQFGVAGLGGAGFPTGTKL----RGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIQTLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A +                   DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLAG---------------SHDIGLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAIIDGEPLT----------ERVVTLTGEAVSQPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+E           +   VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLENAG----FSPGSEQMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSASEMGEEQEEKGCIRCSACADACPADLLPQQLYWFSKGQLH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI---KNFRPL 411
             +    + ++  IE    C    A AW     I   + FR  
Sbjct: 406 --DKAKAHNLADCIE----CG---ACAWVCPSSIPLVQYFRQE 439


>gi|297587688|ref|ZP_06946332.1| Na(+)-translocating NADH-quinone reductase subunit A [Finegoldia
           magna ATCC 53516]
 gi|297574377|gb|EFH93097.1| Na(+)-translocating NADH-quinone reductase subunit A [Finegoldia
           magna ATCC 53516]
          Length = 442

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 100/320 (31%), Gaps = 60/320 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  ++ I+  +K +G+ G GGAGF T +K   M K    +   +++N  E EP    D+ 
Sbjct: 120 QLSKEVILERIKEAGIVGLGGAGFPTHIK---MKKKPDVKIEEVILNGAECEPYLTSDQL 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M   P   I G  I    +     +I V         + Q A+     +    +N    
Sbjct: 177 NMELYPQKAIGGLKIIMKLMDCDKGYIGVED-------NKQKAIGILKNAAKDETN---- 225

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I +      Y  G+E  L+ ++ GKK     K       G+ G      N+ S   
Sbjct: 226 ----ISICAVKTKYPQGDERRLINAITGKKI---SKAQRSNERGVQGL-----NISSAMA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   +                          +  P  +   +   F +L+  +C G +  
Sbjct: 274 IYDAVVHSIPLTHRIVT---------MTGSAIKEPKNIYVPIGTKFKDLV-DYCDGFKET 323

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 ++ GG  +                   E  +   T  +I M+            
Sbjct: 324 P---YKIVVGGPMMGACQYNL------------EAPTVKTTGGIIFMNEKD--------- 359

Query: 337 SVFYKHESCGQCTPCREGTG 356
           +     E C +C  C +   
Sbjct: 360 ATLASPEPCIKCAKCVDVCP 379


>gi|325280076|ref|YP_004252618.1| electron transport complex, RnfABCDGE type, C subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324311885|gb|ADY32438.1| electron transport complex, RnfABCDGE type, C subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 443

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 113/344 (32%), Gaps = 73/344 (21%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           +   ++ I+  + A+G+ G GGA F T +K +  P   ++    L++N  E EP    D 
Sbjct: 119 ITLSKEEIVKAIAAAGIVGMGGATFPTQVKLTPPPGNKAE---VLIINGVECEPYLTADH 175

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            IM  +   +I G  I   AI    A I +          LQ          + G     
Sbjct: 176 RIMLEKAEEIIIGVQILMKAIDVKRAIIGIENNKKDAIAHLQ---------DIAGKVLG- 225

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
                + +      Y  G E  L+++    +  P    P             V NV +  
Sbjct: 226 -----VEICPLKVKYPQGGEKQLIQA-TVNRAVPSGALPIAVGA-------VVQNVGTAL 272

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V          Y    +      ++ +++G  V  P      +     +LIE   G   
Sbjct: 273 AV----------YEAVMKNKPLIERVVTVTGKSVKNPGNFLCRIGTPISKLIEAAGGM-- 320

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              ++   VI GG          M   +++ D         GT+ V++++      +A  
Sbjct: 321 --PEDTAKVIGGGP--------MMGRTMVNIDS----PVMKGTSGVLLINEK----EAAR 362

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMR-----------VMERLVK 367
           R        +C +C  C       +            ++ER+ +
Sbjct: 363 RPMR-----NCIRCGKCVSACPMGLEPYLLMKLSQFNLLERMEE 401


>gi|294784049|ref|ZP_06749371.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479861|gb|EFG27640.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium sp. 1_1_41FAA]
          Length = 435

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 136/384 (35%), Gaps = 71/384 (18%)

Query: 29  WDNVDKI---LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI       +  +++ ++  G+ G GGA F T +K +  P    D    L++N  
Sbjct: 106 WAELTKIANWETADKKELLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P +++EG  I    +     ++ +        ES++ A +    
Sbjct: 163 ECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMKKATE---- 218

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++S+  ++         P+ VG+    
Sbjct: 219 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 259

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   +  G               K+ +++G  +  P  ++ ++   F  
Sbjct: 260 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVTGKAIKNPKNLKVAIGTPFSY 308

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++  +CG  R   + L   + GG          M  A M     +E     GT+ ++ + 
Sbjct: 309 IL-DYCGINRDEMERL---VMGGP--------MMGLAQMT----EEATVVKGTSGLLALT 352

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
                          YK ++C  C+ C       +   + +RL      +      + + 
Sbjct: 353 NEE---------MRPYKTKACISCSKCVSACPMGLAPLMFDRLAAAKEYEAMAG--HNLM 401

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 402 DCIECGS-CAYICPANRPLAEAIK 424


>gi|160946965|ref|ZP_02094168.1| hypothetical protein PEPMIC_00927 [Parvimonas micra ATCC 33270]
 gi|158447349|gb|EDP24344.1| hypothetical protein PEPMIC_00927 [Parvimonas micra ATCC 33270]
          Length = 444

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 128/370 (34%), Gaps = 71/370 (19%)

Query: 42  WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
            II+ +K +G+ G GGAGF T +K +           Y+++N  E EP    D+ +M   
Sbjct: 126 DIIDAIKEAGIVGLGGAGFPTHVKLTA---REGQITDYIIINCAECEPYLTSDQLMMELY 182

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
           P  ++ G ++A  A+GA    + +        + L+ A                    ++
Sbjct: 183 PEKVVMGLLLAMKAMGAKKGILGIEDNKPLAIDKLKEA---------------SKSYPEV 227

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V      Y  G++  L+++  G            + VG+      V N  +   +   +
Sbjct: 228 TVSVVKTKYPQGDQKRLIQATTG---VVVPSGASTSAVGIR-----VVNANTAIAINDAV 279

Query: 222 RRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
             G   Y           KL +++GH +  P  V   +     +++E   G         
Sbjct: 280 LHGKPLY----------EKLVTMTGHALKEPQNVMVRVGSKVSDIVEFIGGYSSEPGK-- 327

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
             +I GG          M       +    + +G     ++ M +     KA+       
Sbjct: 328 --IISGGP--------MMGETQYTPN----VTTGKAMGGLLFMTQEESAPKAV------- 366

Query: 341 KHESCGQCTPCREGTGWMMRVME-RLVKGIAQKREIDLLYEVSKNIEGRT---ICALGDA 396
               C +C  C +     ++ +  +L     +  E + L+ +   IE  +   IC     
Sbjct: 367 --SPCIRCGRCVDICPVYLQPLYLQLYTLKNRVGEAEKLH-LMDCIECGSCSYICP---- 419

Query: 397 AAWPIQGLIK 406
           +  P+   I+
Sbjct: 420 SNRPLVETIR 429


>gi|297539546|ref|YP_003675315.1| RnfABCDGE type electron transport complex subunit C [Methylotenera
           sp. 301]
 gi|297258893|gb|ADI30738.1| electron transport complex, RnfABCDGE type, C subunit
           [Methylotenera sp. 301]
          Length = 640

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 91/265 (34%), Gaps = 47/265 (17%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            W N DK L      +++ +++SG+ G GGA F T +K     K      H LV+NA E 
Sbjct: 134 GWRNADKKL------LVDSLRSSGIVGLGGATFPTHIKLRTNGKSN---VHTLVINAAEC 184

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR     +I+G  I    +GA    I +     +   ++  A        
Sbjct: 185 EPYITCDDMLMRERSDQVIKGIEIVQHLLGAEKCIIGIEDNKPQAASAMTTACA------ 238

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                     D  + V      Y  G+   L+  L   +  P  K     +VG+      
Sbjct: 239 ----------DKAMQVKVVPTLYPSGDARRLIHLLLDIE-IPNDK--RSTDVGI-----Q 280

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           V N+ ++  V      G    +          ++ +++G+V  P   E         LI 
Sbjct: 281 VFNIATVLAVYRYFEFGEPAIN----------RIVTMTGNVVKPQNFEVLFGTPLQSLIA 330

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPC 292
              G            I GG  +  
Sbjct: 331 AAGGAKADTTH----YIMGGPMMGF 351


>gi|153953486|ref|YP_001394251.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|153953490|ref|YP_001394255.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|146346367|gb|EDK32903.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|146346371|gb|EDK32907.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
          Length = 442

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 115/327 (35%), Gaps = 68/327 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +        +  Y +VNA E EP    D+ +MR+    ++    I   ++GA 
Sbjct: 20  FPTHVKLNT-------KVKYFIVNALECEPLLQSDKYLMRNHSDEIVGATEIIGKSLGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++  +  E ++L  ++             KL   V++ ++     Y  G+E  L+
Sbjct: 73  KIVIGLKNVYYNEIDALTNSIK------------KLNSSVELFLNRS--FYPAGDEQILV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + GK   P      P+ VG       V+NV ++  V   L+     Y           
Sbjct: 119 YEVTGKTIAP---GAIPSTVG-----AVVSNVGTVFNVFEALKDEPVTY----------- 159

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP-CLPAGQM 298
           K  ++ G V  P  V+  +     E IEK  G   G +     VI GG  +   +   + 
Sbjct: 160 KYVTVVGEVASPAIVKVPIGTKVTECIEKCGGATLGDY----VVIMGGPMMGKKISKEEA 215

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL----SVFYKHESCGQCTPCREG 354
              ++                +IV+ +    + A  RL     V     +C QC  C E 
Sbjct: 216 ENTVITKT----------NGGIIVIPK-DHYVAARERLTIEEMVHRAKAACEQCRYCTEL 264

Query: 355 TGWM--------MRVMERLVKGIAQKR 373
                        ++M  +  G   + 
Sbjct: 265 CPRYQIGHPLHPHKIMRTMALGRNDEE 291


>gi|73982775|ref|XP_864277.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa isoform 3 [Canis familiaris]
          Length = 120

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 50/74 (67%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIFTNLYG     L  + SRG W    +IL KG DWI+ EVK SGLRGRGGAGF 
Sbjct: 35  LKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFP 94

Query: 62  TGMKWSFMPKVCSD 75
           TG+KWSFM K    
Sbjct: 95  TGLKWSFMNKPSDG 108


>gi|126464670|ref|YP_001045783.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106481|gb|ABN79011.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 517

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 121/340 (35%), Gaps = 65/340 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + I  +V  +G+ G GGA F + +K +   K      H LV+N  E EP    D  +M
Sbjct: 134 TPEEIAAKVAEAGIVGMGGATFPSAVKLNLRSKYD---LHTLVINGAECEPYLTCDDRLM 190

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     + +G  I + A+G     + +         ++Q                    D
Sbjct: 191 RERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQR--------------FDRALD 236

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           + + V      Y  G E  L++ L G++   R      A++G+      V+N  +   V 
Sbjct: 237 IPLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVH 288

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +R G    S          ++ ++SG  V  P  V   +     E+I  +CGG     
Sbjct: 289 LAVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVI-AYCGGYAEEP 337

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR-STDIIKAIWRL 336
           D LL    GG  +   P   +R  ++            GT+ ++ + R  T  +  +   
Sbjct: 338 DRLLL---GGPMMGQ-PIQNLRVPLV-----------KGTSGILALTRAETPGVDTM--- 379

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
                   C +C  C +     +   E  +    Q  +++
Sbjct: 380 -------PCIRCGRCAQACPVGLTPFE--LNARIQSEDLE 410


>gi|219854108|ref|YP_002471230.1| hypothetical protein CKR_0765 [Clostridium kluyveri NBRC 12016]
 gi|219854112|ref|YP_002471234.1| hypothetical protein CKR_0769 [Clostridium kluyveri NBRC 12016]
 gi|219567832|dbj|BAH05816.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
 gi|219567836|dbj|BAH05820.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 443

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 115/327 (35%), Gaps = 68/327 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +        +  Y +VNA E EP    D+ +MR+    ++    I   ++GA 
Sbjct: 21  FPTHVKLNT-------KVKYFIVNALECEPLLQSDKYLMRNHSDEIVGATEIIGKSLGAE 73

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++  +  E ++L  ++             KL   V++ ++     Y  G+E  L+
Sbjct: 74  KIVIGLKNVYYNEIDALTNSIK------------KLNSSVELFLNRS--FYPAGDEQILV 119

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + GK   P      P+ VG       V+NV ++  V   L+     Y           
Sbjct: 120 YEVTGKTIAP---GAIPSTVG-----AVVSNVGTVFNVFEALKDEPVTY----------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP-CLPAGQM 298
           K  ++ G V  P  V+  +     E IEK  G   G +     VI GG  +   +   + 
Sbjct: 161 KYVTVVGEVASPAIVKVPIGTKVTECIEKCGGATLGDY----VVIMGGPMMGKKISKEEA 216

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL----SVFYKHESCGQCTPCREG 354
              ++                +IV+ +    + A  RL     V     +C QC  C E 
Sbjct: 217 ENTVITKT----------NGGIIVIPK-DHYVAARERLTIEEMVHRAKAACEQCRYCTEL 265

Query: 355 TGWM--------MRVMERLVKGIAQKR 373
                        ++M  +  G   + 
Sbjct: 266 CPRYQIGHPLHPHKIMRTMALGRNDEE 292


>gi|154249084|ref|YP_001409909.1| electron transport complex, RnfABCDGE type, C subunit
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153020|gb|ABS60252.1| electron transport complex, RnfABCDGE type, C subunit
           [Fervidobacterium nodosum Rt17-B1]
          Length = 435

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 120/354 (33%), Gaps = 74/354 (20%)

Query: 27  GHWDNVDKI--LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
             W+ + K+      ++ +++ +K +G+ G GGA F T +K +            L++N 
Sbjct: 105 DDWELLPKLDYRSATKEELLDNIKKAGIVGLGGAMFPTHVKLN-----PPKPVDTLIING 159

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
            E EP    D  +M      ++ G  IA   +G    +I +        E L+       
Sbjct: 160 AECEPYLTIDHRVMLEMSDEILIGIEIAKKILGVKEVYIGIENNKKDAIELLEK------ 213

Query: 145 ASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
                       ++ ++ V      Y  G E  L++++ G++         P++VG+   
Sbjct: 214 -----------KWNGNVKVAALKTKYPQGAEKQLIKAITGREV---PSGGLPSDVGV--- 256

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFD 263
              V NV ++  +   +  G               +  +++G  V         +     
Sbjct: 257 --VVQNVSTMLAIKEAVVDG----------KPLIERGLTLTGEGVKEKGNWWVRIGTPIS 304

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
            +IEK   G   G   +  V+ GG  +  +P   +   I+            G   + ++
Sbjct: 305 WIIEKLGNGFVEGLQEVK-VLMGGPMMG-IPVSSLDTPIL-----------KGNNGLTII 351

Query: 324 DRSTDIIKAIWRLSVFYKHES--CGQCTPCREGTGWMMR--VMERLVKGIAQKR 373
                            K ES  C +C+ C       ++  +++ L +      
Sbjct: 352 TEQ--------------KRESTNCIRCSYCVHVCPMNLQPYLLDLLSRKKKYDE 391


>gi|239787506|emb|CAX83976.1| Electron transport complex protein [uncultured bacterium]
          Length = 490

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 115/326 (35%), Gaps = 60/326 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +          I + V A+G+ G GGA F   +K +            L++N  E EP  
Sbjct: 116 LADPFTASAKDISDRVAAAGIVGLGGAAFPASVKLTLGMNNK---LETLLLNGAECEPYL 172

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +MR     +I+G  I + A+GA    + +     +  + +  A     A      
Sbjct: 173 TCDDRVMREYADEVIDGARIMAHALGAPKIVVAIEQNKPQAVDRMVQA---AKAFP---- 225

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                   +I +      Y  G E  L +++ G +   R      A++G+      V+NV
Sbjct: 226 --------NIEIASVPVQYPMGSEKHLTQAITGLETPARK---LTADLGV-----VVHNV 269

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIEKHC 270
            +   V   +R G              +++ ++S G V  P  VE  +     EL+   C
Sbjct: 270 ATARAVHHAIRFG----------RPLLSRVVAVSGGAVAQPKNVEVPLGTLVSELV-AFC 318

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GG+ G    L   I GG          M G  +    +       GT+ ++ +    +  
Sbjct: 319 GGLVGTPARL---INGGP---------MMGQPLPSLNVP---VVKGTSGILAL----NAA 359

Query: 331 KAIWRLSVFYKHESCGQC-TPCREGT 355
           +   R +       CG C T C  G 
Sbjct: 360 EVNERPTSPCIR--CGTCVTICPCGL 383


>gi|221369207|ref|YP_002520303.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides KD131]
 gi|221162259|gb|ACM03230.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides KD131]
          Length = 517

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 65/340 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + I  +V  +G+ G GGA F + +K +   K      H LV+N  E EP    D  +M
Sbjct: 134 TPEEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYD---LHTLVINGAECEPYLTCDDRLM 190

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     + +G  I + A+G     + +         ++Q                    D
Sbjct: 191 RERAEEIADGVGIMARALGVRQIVVAIESNKAEAISAMQR--------------FDRALD 236

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           + + V      Y  G E  L++ L G++   R      A++G+      V+N  +   V 
Sbjct: 237 IPLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVH 288

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +R G    S          ++ ++SG  V  P  V   +     E+I  +CGG     
Sbjct: 289 LAVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVI-AYCGGYAEEP 337

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR-STDIIKAIWRL 336
           D LL    GG  +                 L+ +    GT+ ++ + R  T  +  +   
Sbjct: 338 DRLLL---GGPMMG-----------QPIQNLR-VPVVKGTSGILALTRAETPGVDTM--- 379

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
                   C +C  C +     +   E  +    Q  +++
Sbjct: 380 -------PCIRCGRCAQACPVGLTPFE--LNARIQSEDLE 410


>gi|290509259|ref|ZP_06548630.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55]
 gi|289778653|gb|EFD86650.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55]
          Length = 551

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 129/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG K     +   
Sbjct: 110 IDADGEDRWIERDGWSDYQ---VRTREALIERIHQFGVAGLGGAGFPTGSKL----RGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     +++G  I +  +      I +     +   
Sbjct: 163 DKIKTLIINAAECEPYITADDRLMQDCAAQIVDGIRILAHILQPDEVLIGIEENKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +                I +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   +   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAIKRAVIDGEPLT----------ERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                      +
Sbjct: 310 VWARLGTPVRHLLNDAGFCASAEP----MVIMGGPLMGF--------------------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
             G    +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 346 LPGLDVPVVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|289424016|ref|ZP_06425805.1| electron transport complex protein RnfC [Peptostreptococcus
           anaerobius 653-L]
 gi|289155591|gb|EFD04267.1| electron transport complex protein RnfC [Peptostreptococcus
           anaerobius 653-L]
          Length = 447

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 118/330 (35%), Gaps = 58/330 (17%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
             + E  ++ I+  +K +G+ G GGA F   +K S  P   ++   ++++N  E EP   
Sbjct: 114 KDVEELSKEEIVGIIKEAGIVGMGGATFPNHVKISPPPDSKAE---FVILNGAECEPYLT 170

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  +M   P  ++ G      A+  +  FI +        +++  A             
Sbjct: 171 ADDRLMVEYPEKVVYGLRALLKALDVNKGFIGIEANKPEALKNVTEAAKP---------- 220

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                  +I V      Y  G E  L+ +  G++         P  VG       V+NV 
Sbjct: 221 -----YPEIEVVGMQVKYPEGAEKQLIYACTGREV---PSGALPIAVG-----AVVSNVA 267

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           + A +   +R G              T +      +  P  +   +   F E+IE+ CGG
Sbjct: 268 TAAAISNAIREGMPLVERI-------TTVTGPC--IKEPKNLITKVGTKFSEIIEQ-CGG 317

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           I+ G      +I GG  +                   ++ +  G++ ++++     +  A
Sbjct: 318 IKEGVTASK-LIAGGPMMGL------------AQYTSDISTNKGSSGILILPEE--MAVA 362

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
             ++       +C +C  C +     ++ +
Sbjct: 363 PEQM-------NCIKCGRCTDVCPAFLQPL 385


>gi|15602250|ref|NP_245322.1| electron transport complex protein RnfC [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|17368785|sp|Q9CNP2|RNFC_PASMU RecName: Full=Electron transport complex protein rnfC
 gi|12720632|gb|AAK02469.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 835

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/388 (15%), Positives = 119/388 (30%), Gaps = 76/388 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +D  L +  + +I ++  +G+ G GGA F T  K     K        L++N  E EP
Sbjct: 122 QPLDDFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLHSAEKQ----VKLLIINGAECEP 177

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +MR     +IEG  I  + +      I V         +L+  +         
Sbjct: 178 YITCDDRLMRDYADEIIEGTRILRYILRPEKVVIAVEDNKPEAVAALRQVLQGAN----- 232

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     DI +      Y  G    L++ L G +          +++G+      + 
Sbjct: 233 ----------DIEIRVIPTKYPSGAAKQLIQILTGMEV---PSGQRSSSIGV-----LMQ 274

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   +                  ++ +++G  V +       +     +L+++
Sbjct: 275 NVATAFAVKRAIMDDEPLI----------ERVVTLTGDKVRHKGNYWVRLGTPIYQLLQQ 324

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                   +D+   V  GG  +  +            + L                    
Sbjct: 325 VD----YHYDDRFPVFMGGPMMGFILPDLQAPVTKMTNCLLAPDHF-------------- 366

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
                   +     +SC +C+ C +      M + +    +    ++  +  Y +   IE
Sbjct: 367 ------EYAPPAPEQSCIRCSACSDACPVSLMPQQLYWFARSEDHEKSEE--YALKDCIE 418

Query: 387 GRTICALGDAAAWPIQG---LIKNFRPL 411
               C L    A+       LI+ FR  
Sbjct: 419 ----CGLC---AYVCPSHIPLIQYFRQE 439


>gi|325263576|ref|ZP_08130310.1| PduS protein [Clostridium sp. D5]
 gi|324031285|gb|EGB92566.1| PduS protein [Clostridium sp. D5]
          Length = 450

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 110/323 (34%), Gaps = 60/323 (18%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
                + + ++ +G+ G GGAGF T  K         +R   +++N  E EP     R +
Sbjct: 2   MEMKELSSILQLNGIVGAGGAGFPTYAKL-------DERAETIILNCAECEPLLRLHRQL 54

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           +      ++E   +   A+GA    I ++  + +  E+L+  +               G 
Sbjct: 55  LEKYAQEIVETFHMMGQAVGAKDVVIGIKKAYKKTIEALEEVI---------------GE 99

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
             ++ +      Y  G+E  L+  + GK  +P      P   G+      V NVE++  V
Sbjct: 100 YPEVRLGLLDEVYPAGDEVVLIYEVTGKVVRP---GGIPIESGV-----AVFNVETVYNV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              + + A              KL SI   V +P TV   +  T +E +           
Sbjct: 152 YRAVNQQAPVTD----------KLVSIVAEVEHPVTVRVPIGTTIEETVRLAGNVTAKDP 201

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                   GG  +  + +G                    T AV+V+     II+   R S
Sbjct: 202 ----VYFIGGPMMGFIGSGSQPVT-------------KTTNAVLVLPEEHLIIQKKRRKS 244

Query: 338 V---FYKHESCGQCTPCREGTGW 357
                     C QCT C +    
Sbjct: 245 SIDLKRAAACCCQCTMCTDLCPR 267


>gi|332560814|ref|ZP_08415132.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N]
 gi|332274612|gb|EGJ19928.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N]
          Length = 517

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 65/340 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + I  +V  +G+ G GGA F + +K +   K      H LV+N  E EP    D  +M
Sbjct: 134 TPEEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYD---LHTLVINGAECEPYLTCDDRLM 190

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     + +G  I + A+G     + +         ++Q                    D
Sbjct: 191 RERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQR--------------FDRALD 236

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           + + V      Y  G E  L++ L G++   R      A++G+      V+N  +   V 
Sbjct: 237 IPLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVH 288

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +R G    S          ++ ++SG  V  P  V   +     E++  HCGG     
Sbjct: 289 LAVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVV-AHCGGYAEEP 337

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR-STDIIKAIWRL 336
           D LL    GG  +                 L+ +    GT+ ++ + R  T  +  +   
Sbjct: 338 DRLLL---GGPMMG-----------QPIQNLR-VPVVKGTSGILALTRAETPGVDTM--- 379

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
                   C +C  C +     +   E  +    Q  +++
Sbjct: 380 -------PCIRCGRCAQACPVGLTPFE--LNARIQSEDLE 410


>gi|77465208|ref|YP_354711.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1]
 gi|77389626|gb|ABA80810.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1]
          Length = 517

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 119/340 (35%), Gaps = 65/340 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + I  +V  +G+ G GGA F + +K +   K      H LV+N  E EP    D  +M
Sbjct: 134 TPEEIAAKVAEAGIVGMGGATFPSAVKLNLRAKYD---LHTLVINGAECEPYLTCDDRLM 190

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     + +G  I + A+G     + +         ++Q                    D
Sbjct: 191 RERAEEIADGVGIMARALGVTQIVVAIESNKAEAISAMQR--------------FDRALD 236

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           + + V      Y  G E  L++ L G++   R      A++G+      V+N  +   V 
Sbjct: 237 IPLRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVH 288

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +R G    S          ++ ++SG  V  P  V   +     E++  HCGG     
Sbjct: 289 LAVRYGEPLLS----------RVVTVSGRAVRRPANVRVLIGTPVSEVV-AHCGGYAEEP 337

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR-STDIIKAIWRL 336
           D LL    GG  +                 L+ +    GT+ ++ + R  T  +  +   
Sbjct: 338 DRLLL---GGPMMG-----------QPIQNLR-VPVVKGTSGILALTRAETPGVDTM--- 379

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
                   C +C  C +     +   E  +    Q  +++
Sbjct: 380 -------PCIRCGRCAQACPVGLTPFE--LNARIQSEDLE 410


>gi|254468948|ref|ZP_05082354.1| electron transport complex protein RnfC [beta proteobacterium KB13]
 gi|207087758|gb|EDZ65041.1| electron transport complex protein RnfC [beta proteobacterium KB13]
          Length = 503

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 112/323 (34%), Gaps = 65/323 (20%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
              + +  ++K+SG+ G GGA F T +K +      S++   L+VNA E EP    D   
Sbjct: 124 LSSEALYEKMKSSGIVGLGGATFPTHIKLN------SNKIKTLIVNAAECEPYITCDDMA 177

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M+ +    IEG  I    +    A I +     +  E L+  +++               
Sbjct: 178 MQEKTKEFIEGIQITMDILKIPHAIIGIEDNKPKAIEKLKTVLNKSK------------- 224

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
             +I +      Y  G+E  L+  + G K     K   P + G+      V NV ++  +
Sbjct: 225 --NISIKVVPTVYPSGDEKRLIYLMLGLKI---SKEKRPVDFGI-----QVFNVATLISI 274

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
                      S          ++ +++G +  P   E  +     ELI+   G      
Sbjct: 275 GRFFYHSEPVIS----------RIVTVTGALKRPNNYEALIGTPIQELIKDAGG------ 318

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
            +   +I GG          M G  + +  +    +     A+    +S D  +      
Sbjct: 319 KSDQEIIMGGP---------MMGFKLPHTDVSVTKAMNCLLAITDEMKSKDTFEM----- 364

Query: 338 VFYKHESCGQCTPCREGTGWMMR 360
                  C +CT C E     ++
Sbjct: 365 ------PCIRCTKCVEVCPAQLQ 381


>gi|330015738|ref|ZP_08308240.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           sp. MS 92-3]
 gi|328531063|gb|EGF57918.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           sp. MS 92-3]
          Length = 565

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 125/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF  G K     +   
Sbjct: 75  IDADGEDRWIERDGWSDYQ---TRTREALIERIHQFGVAGLGGAGFPPGSKL----RGGG 127

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 128 DKIKTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPEEVLIGIEDNKPQAIS 187

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + + +                I +      Y  G    L + L GK+        
Sbjct: 188 MLRAVLCDAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 229

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V  P  
Sbjct: 230 RSSDIGV-----LMQNVGTAYAVKRAVVDGEPLT----------ERVVTLTGEAVTRPGN 274

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 275 VWARLGTPVRHLLNDAGFCPSAEP----MVIMGGPLMGF--TLPWLDVP----------- 317

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 318 -------VVKITNCLLAPSASEMGEPQEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 370

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 371 --DKATAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 404


>gi|77920097|ref|YP_357912.1| pyridine nucleotide-disulfide oxidoreductase [Pelobacter
           carbinolicus DSM 2380]
 gi|77546180|gb|ABA89742.1| pyridine nucleotide-disulfide oxidoreductase [Pelobacter
           carbinolicus DSM 2380]
          Length = 663

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 62/127 (48%)

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              + ++D    + + LG     V D+ T I+ A  +       ESCG+CTPCR GT  +
Sbjct: 30  FDQMDEFDPGNPVKAFLGANGFFVFDKETSILDAAHQYVATAARESCGKCTPCRVGTEVL 89

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
              +E L KG      +D +  ++++I+  ++C LG  A  P+  ++++FR   E  I +
Sbjct: 90  TSKLEALSKGELGADAVDEILTLAEHIKSTSMCGLGQTATDPLIAMLRHFRDEFEVNIGR 149

Query: 419 YHRCNFQ 425
           Y     Q
Sbjct: 150 YDETGRQ 156


>gi|160878369|ref|YP_001557337.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           phytofermentans ISDg]
 gi|160427035|gb|ABX40598.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           phytofermentans ISDg]
          Length = 439

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 111/344 (32%), Gaps = 68/344 (19%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            ++ + K      + I + +K +G+ G GGAGF T +K +       D   YL++N  E 
Sbjct: 116 DYETLKK------EQIRSIIKEAGIVGMGGAGFPTHIKLTPKDDSAID---YLIINGSEC 166

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +M  E + LI+G  I         A I V          L  A+       
Sbjct: 167 EPYLTSDYRMMLEETNRLIKGIKITLRLFENAKAIIAVEDNKPEAISMLTHALRN----- 221

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                     +  I +      Y  G E  L+ ++ G+K    +    P+++G       
Sbjct: 222 ----------ENRIELKVIKTKYPQGAERVLIYAITGRKMNSTM---LPSDIG-----CI 263

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           VNNV+++  V   +                  ++ ++SG  V             + EL+
Sbjct: 264 VNNVDTMISVCRAVAE----------NTPLIKRVVTVSGDAVKNQGNFIVLTGTNYSELV 313

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           E   G           +I GG  +    A       +       +     +  V  M+  
Sbjct: 314 EAVGG----FSAKPAKLISGGPMMGL--ALYSLDIPVTKTSSALL--AFASDEVADMEEG 365

Query: 327 TDIIKAIWRLSVFYKHESCGQCT---PCREGTGWMMRVMERLVK 367
             I               CG+C    P R     +M   ER   
Sbjct: 366 PCIR--------------CGRCVEVCPGRIVPQKLMEFAERFDD 395


>gi|254446706|ref|ZP_05060181.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198256131|gb|EDY80440.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 456

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 114/335 (34%), Gaps = 65/335 (19%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +     + E  +  I+  V+ +GL G GGA F T +K +        + H +++N  E E
Sbjct: 124 YFKSRNVDEMSQQEIVKAVQETGLVGLGGAAFPTHVKLT---PPKDHKVHTVLINGCECE 180

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D  +M  +   L+ G  I   A+ A  A I      +   E+++A          
Sbjct: 181 PFLTTDHRVMLEQAEDLVAGTRIFMKALNAERAIIGTENNKLDAVEAIRA---------- 230

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                KL  D  I V      Y  G E  L ++L   +        +P++VGL      V
Sbjct: 231 -----KLPKDGSITVQAVKTKYPQGAEKMLAKALMNLEI---PSGGYPSSVGL-----AV 277

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
            NV S A V      GA      G       ++ +++G  +         +      +++
Sbjct: 278 FNVSSTAQV------GALLPVNGGVIE----RVVTVTGPGIEKQGNYNVPIGTPIRFILD 327

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
           +          +   +I GG  +    +       +            G   V+V+    
Sbjct: 328 QLG-----FRGSAQHIILGGPMMGSCISS--LDVPITK----------GCGGVLVLTE-R 369

Query: 328 DIIKAIWRLSVFYKHESCGQCT--------PCREG 354
           D+     R S      SCG C         PC+ G
Sbjct: 370 DVQSEASRTSHPCI--SCGACVEACPMHLNPCQLG 402


>gi|126698731|ref|YP_001087628.1| electron transport complex protein [Clostridium difficile 630]
 gi|254974671|ref|ZP_05271143.1| electron transport complex protein [Clostridium difficile
           QCD-66c26]
 gi|255092059|ref|ZP_05321537.1| electron transport complex protein [Clostridium difficile CIP
           107932]
 gi|255100151|ref|ZP_05329128.1| electron transport complex protein [Clostridium difficile
           QCD-63q42]
 gi|255306041|ref|ZP_05350213.1| electron transport complex protein [Clostridium difficile ATCC
           43255]
 gi|255313796|ref|ZP_05355379.1| electron transport complex protein [Clostridium difficile
           QCD-76w55]
 gi|255516477|ref|ZP_05384153.1| electron transport complex protein [Clostridium difficile
           QCD-97b34]
 gi|255649577|ref|ZP_05396479.1| electron transport complex protein [Clostridium difficile
           QCD-37x79]
 gi|260682741|ref|YP_003214026.1| electron transport complex protein [Clostridium difficile CD196]
 gi|260686339|ref|YP_003217472.1| electron transport complex protein [Clostridium difficile R20291]
 gi|306519703|ref|ZP_07406050.1| electron transport complex protein [Clostridium difficile
           QCD-32g58]
 gi|115250168|emb|CAJ67989.1| Electron transport complex protein [Clostridium difficile]
 gi|260208904|emb|CBA61888.1| electron transport complex protein [Clostridium difficile CD196]
 gi|260212355|emb|CBE03164.1| electron transport complex protein [Clostridium difficile R20291]
          Length = 445

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 125/379 (32%), Gaps = 65/379 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  ++ I+  +K +G+ G GGA F   +K S  P   ++    +++N  E EP    D  
Sbjct: 118 DLSKEDIVGIIKEAGIVGMGGATFPNHVKVSPPPDSKAE---VVILNGAECEPYLTADHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M   P  ++ G       +     FI +        E++Q              N    
Sbjct: 175 LMVENPEDVVFGLRALMKVLDVKKGFIGIETNKPDAIEAIQ--------------NVAKD 220

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           Y  +I V      Y  G E  L+ +  GK+  P    P  A          V+NV + A 
Sbjct: 221 YS-EIEVVGLQVKYPQGAEKQLIYACTGKE-VPSGGLPIAAGA-------VVDNVATAAQ 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   ++ G              T +      +  P  +   +     E+IE+ CGG +  
Sbjct: 272 IAKSIKTGMPLVERI-------TTITGSC--IKEPKNLITKVGTLVSEIIEQ-CGGFKED 321

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 VI GG  +                   E+ +  G++ ++ +D        I   
Sbjct: 322 KKIGK-VIMGGPMMGI------------AQYTTEIATNKGSSGILCLDEEESRTPDIQN- 367

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT---ICAL 393
                   C +C  C +     ++ +      +    +    +     IE  +   IC  
Sbjct: 368 --------CLRCGRCTDVCPSFLQPLFISAYSLKDDYDTAEYHRAMDCIECGSCSFICP- 418

Query: 394 GDAAAWPIQGLIKNFRPLI 412
              A  P+   I++ +  I
Sbjct: 419 ---ARRPLLQSIRSAKREI 434


>gi|121996875|ref|YP_001001662.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588280|gb|ABM60860.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 448

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 103/320 (32%), Gaps = 57/320 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + ++  ++ +G+ G+GGA F T +K+             LVVN  E EP    D  
Sbjct: 125 ALSGEELVEAIRDAGIVGQGGASFPTHLKF---AVPEGYTVDTLVVNGCECEPFLSADHR 181

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M     ++I+G  +A  A+GA  A I V                    + + G ++   
Sbjct: 182 LMVEATDSIIDGVRLAMRAVGAPEAVIGVEDNKPDAV--------AALQAAVAGEDA--- 230

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I V      Y  G E  L+++L  ++         P  +G       VNN+ ++A 
Sbjct: 231 ----IRVVQLKSKYPQGSEKMLIKALLDREV---PSGGLPYEIG-----AVVNNIGTMAQ 278

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +  +L RG             G         V  P      +      L+E+        
Sbjct: 279 LGYLLPRGEGLIERVITVAGPG---------VERPGNYRVPVGTPLRYLLEEVG----FE 325

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D+   +I GG  +            +            G + V+V+             
Sbjct: 326 GDDPSRIILGGPMMG--NTVAFLDVPITK----------GVSGVLVLPEG------AGDE 367

Query: 337 SVFYKHESCGQCTPCREGTG 356
           S     + C +C  C E   
Sbjct: 368 SEQPPTQPCIRCGRCVEVCP 387


>gi|262393720|ref|YP_003285574.1| electron transport complex protein RnfC [Vibrio sp. Ex25]
 gi|262337314|gb|ACY51109.1| electron transport complex protein RnfC [Vibrio sp. Ex25]
          Length = 916

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 124/347 (35%), Gaps = 66/347 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QETPDALIDIIRLAGISGMGGAGFPTAKK----IQSGFARTEILIVNAAECEPYITSDDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     LI+G  I    +      I +        ++L+AA                 
Sbjct: 186 LMQEHAEELIQGIEIVEHILTPKLTIIGIEDNKPEAIKALEAA----------------A 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 230 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGAIPADIGI-----LVQNVGSLYS 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+++       
Sbjct: 282 IKRAIIDGEPMIK----------RVVTLTGKTFKQPRNVWALLGTPVQALLDEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  + V +   +  I+    R
Sbjct: 329 ADKKLQRLIMGGPMMGF---------------------TLPHSQVPITKTANCILAPTRR 367

Query: 336 LSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
               ++HE  C +C+ C E       ++ + ++  A+  E D L E+
Sbjct: 368 EISPHQHEMECIRCSQCAEACP--ASLLPQQLQWHAKAEEYDKLEEL 412


>gi|150021446|ref|YP_001306800.1| electron transport complex, RnfABCDGE type, C subunit [Thermosipho
           melanesiensis BI429]
 gi|149793967|gb|ABR31415.1| electron transport complex, RnfABCDGE type, C subunit [Thermosipho
           melanesiensis BI429]
          Length = 438

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 124/359 (34%), Gaps = 71/359 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + +++ +K +G+ G GGA F T +K +       D    LV+N  E EP    D  +M
Sbjct: 120 SPEELVDIIKRAGIVGLGGAMFPTHVKLTPPKDKKID---TLVINGAECEPYLTIDHRMM 176

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             +   ++ G  I    +G   A I +    +   +              L  N   G  
Sbjct: 177 LEKYEEILIGIEIVKKILGIEKAIIGIEDNKLDAID--------------LLENKWKG-- 220

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             + V      Y  G E  L+ +    +  PR K   P +VG+      V NV ++  + 
Sbjct: 221 -KVDVKALKTKYPQGAEKQLIYA-TTNRKVPRGK--LPMDVGV-----VVLNVSTLFAIK 271

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +  G               +  +++G  +N P      +      +IE+   G++   
Sbjct: 272 EAVIDG----------KPLIERGLTVTGEAINKPGNWWVRIGTPISWVIERLGEGLKSEA 321

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
           +N+  V+ GG  +  +P   +   ++            G   +  +            + 
Sbjct: 322 ENVK-VLMGGPMMG-IPINNIDTPLV-----------KGNNGITTI------------IP 356

Query: 338 VFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVSKNIEGRT---IC 391
              K   C +C+ C       ++  +++ L  G  ++ +      +   IE  +   IC
Sbjct: 357 KEQKSTFCIRCSYCVNVCPMGLQPYLLDLL--GKKKRYDEAAKIGLLDCIECGSCTYIC 413


>gi|282601058|ref|ZP_05980581.2| Na(+)-translocating NADH-quinone reductase, A subunit
           [Subdoligranulum variabile DSM 15176]
 gi|282570492|gb|EFB76027.1| Na(+)-translocating NADH-quinone reductase, A subunit
           [Subdoligranulum variabile DSM 15176]
          Length = 456

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 126/368 (34%), Gaps = 69/368 (18%)

Query: 23  SMSRGHWDNVDKI----LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           ++       VD          +  ++  ++A GL G GGAGF T +      K+ +D   
Sbjct: 110 AIKTDGQQTVDPACVPPTVTDKASLLAAIQACGLVGVGGAGFPTHV------KLAADTVD 163

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D   M     T+I G              I +        + +  
Sbjct: 164 TLLINAAECEPYLTTDCREMLECSDTIISGIAAVMKYCNIPNCIIGIERNKPECIDQM-- 221

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ---PRLKPPF 195
                       + +  G    + V      Y  G E  L+E+  G++     P  K   
Sbjct: 222 ---------YSLTRNMSG----VSVKPLPTRYPQGAEKTLVETCTGREVPQVGPSGKAGL 268

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTV 254
           PA+VG       + NV S++ +   L+ G              TK  ++ G  +  P  V
Sbjct: 269 PADVG-----CIIMNVTSVSTLGKYLKTGMPLT----------TKRVTVEGDAIAKPQNV 313

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           E  +   + ++IE  CGGI+   +    +  G       P+        D+  LK+    
Sbjct: 314 EVPIGTLYRDVIE-ACGGIKPDVELGKIIFGGPMMGGAAPSA-------DFPVLKQ---- 361

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
                ++   ++ D+ +A           +C +C  C +     +  +  +V      R+
Sbjct: 362 -NNGLLLFSKKAADLPEA----------SACIRCGRCIDACPMGLEPV--VVAEAFNNRD 408

Query: 375 IDLLYEVS 382
            D L    
Sbjct: 409 FDALKARC 416


>gi|255655136|ref|ZP_05400545.1| electron transport complex protein [Clostridium difficile
           QCD-23m63]
 gi|296451124|ref|ZP_06892865.1| Na(+)-translocating NADH-quinone reductase subunit A [Clostridium
           difficile NAP08]
 gi|296880524|ref|ZP_06904486.1| Na(+)-translocating NADH-quinone reductase subunit A [Clostridium
           difficile NAP07]
 gi|296259945|gb|EFH06799.1| Na(+)-translocating NADH-quinone reductase subunit A [Clostridium
           difficile NAP08]
 gi|296428478|gb|EFH14363.1| Na(+)-translocating NADH-quinone reductase subunit A [Clostridium
           difficile NAP07]
          Length = 445

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 125/379 (32%), Gaps = 65/379 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  ++ I+  +K +G+ G GGA F   +K S  P   ++    +++N  E EP    D  
Sbjct: 118 DLSKEDIVGIIKEAGIVGMGGATFPNHVKVSPPPDSKAE---VVILNGAECEPYLTADHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M   P  ++ G       +     FI +        E++Q              N    
Sbjct: 175 LMVENPEDVVFGLRALMKVLDVKKGFIGIETNKPDAIEAIQ--------------NVAKD 220

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           Y  +I V      Y  G E  L+ +  GK+  P    P  A          V+NV + A 
Sbjct: 221 YS-EIEVVGLQVKYPQGAEKQLIYACTGKE-VPSGGLPIAAGA-------VVDNVATAAQ 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   ++ G              T +      +  P  +   +     E+IE+ CGG +  
Sbjct: 272 IAKSIKTGMPLVERI-------TTVTGSC--IKEPKNLITKVGTLVSEIIEQ-CGGFKED 321

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 VI GG  +                   E+ +  G++ ++ +D        +   
Sbjct: 322 KKIGK-VIMGGPMMGI------------AQYTTEIATNKGSSGILCLDEEESRTPDVQN- 367

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT---ICAL 393
                   C +C  C +     ++ +      +    +    +     IE  +   IC  
Sbjct: 368 --------CLRCGRCTDVCPSFLQPLFISAYSLKDDYDTAEYHRAMDCIECGSCSFICP- 418

Query: 394 GDAAAWPIQGLIKNFRPLI 412
              A  P+   I++ +  I
Sbjct: 419 ---ARRPLLQSIRSAKREI 434


>gi|15643016|ref|NP_228058.1| electron transport complex protein, putative [Thermotoga maritima
           MSB8]
 gi|4980743|gb|AAD35335.1|AE001708_3 electron transport complex protein, putative [Thermotoga maritima
           MSB8]
          Length = 451

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 111/324 (34%), Gaps = 65/324 (20%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             ++ I+  +K +G+ G GGA F T +K S  P+   D    L+VN  E EP    D  +
Sbjct: 133 MSKEEILEIIKKAGIVGLGGAMFPTHVKLSPPPEKKVD---TLIVNGAECEPVLTIDHRL 189

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M      +++G +I    +G   A + V    +    +L+                  GY
Sbjct: 190 MLERAEDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLKKVFK--------------GY 235

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
            VD  V      Y  G E  L+ ++ G +  PR     P +VG+      V NV +   V
Sbjct: 236 PVD--VALLRTKYPQGAEKQLIYAITG-RMVPRGG--LPMDVGV-----VVQNVGTCVAV 285

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +  G               +  ++SG  V     +   +     ++I  +CGGI   
Sbjct: 286 KEAVVDGKPLV----------ERGMTVSGDAVKNQKNLIVRIGTPVKDVI-DYCGGIDEN 334

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            +    VI GG  +    +       +            GT+ +                
Sbjct: 335 TER---VILGGPMMGI--SITNLDIPV----------MKGTSGITAFLPKKS-------- 371

Query: 337 SVFYKHESCGQCTPCREGTGWMMR 360
                 + C +C+ C +     ++
Sbjct: 372 ---RPQKPCIRCSECVQVCPMNLQ 392


>gi|225027273|ref|ZP_03716465.1| hypothetical protein EUBHAL_01529 [Eubacterium hallii DSM 3353]
 gi|224955426|gb|EEG36635.1| hypothetical protein EUBHAL_01529 [Eubacterium hallii DSM 3353]
          Length = 437

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 92/269 (34%), Gaps = 43/269 (15%)

Query: 27  GHWDNV--DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           G ++ V    + EK  + IIN VK +G+ G GGAGF T +K S       ++   +++NA
Sbjct: 103 GEYETVSFQPVTEKTNEAIINAVKEAGIVGLGGAGFPTHVKLS---PKEPEKIDTIIINA 159

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
            E EP    D   M   P  LI G  I           I +          L        
Sbjct: 160 AECEPYITADYRCMMEIPEQLISGLNIMLSLFPKAKGVIGIEDNKPEAIAKLTEMCKN-- 217

Query: 145 ASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
                        +  I V      Y  G E +L+ ++ G+     +    PA+ G    
Sbjct: 218 -------------ESRIEVAALKTKYPQGAERSLIFAVTGRAINSSM---LPADAG---- 257

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFD 263
              V+NV +   +   +  G   +           ++ +++G  +  P   +        
Sbjct: 258 -CIVDNVATAIAIHEAITLGKPLF----------ERVVTVTGDAIKNPGNFKVKNGTNAA 306

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
           EL+E   G           VI GG  +  
Sbjct: 307 ELVEAAGG----FKSQPEKVISGGPMMGM 331


>gi|325303370|tpg|DAA34498.1| TPA_inf: NADH dehydrogenase I subunit F [Amblyomma variegatum]
          Length = 122

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 53/76 (69%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           L D+DRIF NLYG     L  +MSRG W    +I+ KG DWII+E+K SGLRGRGGAGF 
Sbjct: 47  LKDEDRIFQNLYGRHDWRLKGAMSRGDWYKTKEIVLKGPDWIIDEIKKSGLRGRGGAGFP 106

Query: 62  TGMKWSFMPKVCSDRP 77
           +G+KWSFM K    RP
Sbjct: 107 SGLKWSFMNKPSDGRP 122


>gi|212695714|ref|ZP_03303842.1| hypothetical protein ANHYDRO_00234 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677387|gb|EEB36994.1| hypothetical protein ANHYDRO_00234 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 443

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 117/353 (33%), Gaps = 64/353 (18%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
             +    ++ I+  +K +GL G GGA F   +K+S      +     +++N  E EP   
Sbjct: 120 KDVTNLTKEKIVEAMKENGLVGMGGAAFPAHIKYS-----PNKAVDTVIINGAECEPYVT 174

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  I++ +P  +++   +   A+ A    I +        E ++ A+ +         N
Sbjct: 175 CDDYILKTKPEIIVDALELLVKAVDAKKGIIAIEDNKQEAIEKVRKAIAD--------KN 226

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
           S       + +      Y  G+E  ++ ++   +  P      P +VG+      V+NV 
Sbjct: 227 SP-----KLELATMVTKYPQGDEKRIINAVL-HREVP--SGGLPMDVGV-----IVSNVS 273

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           S   V   +  G      +      G         +  P      +  +F+++IE+  G 
Sbjct: 274 SANAVYEAVYYGKPLIERYMTVTGHG---------IKNPSNFLVRLGTSFEDMIEEAGGM 324

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
                     VI GG  +        +                 +  ++V+++       
Sbjct: 325 TEDAGK----VINGGPMMGIAQPNINQPVE------------KASNCILVLNKEESKAPV 368

Query: 333 IWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGI--AQKREIDLLYEV 381
                       C +C  C        M  ++ +        + +++ +L  +
Sbjct: 369 T---------NPCIRCAKCVNVCPVGLMPLLIHKFSLKEKFDKAQDLHILDCI 412


>gi|269120526|ref|YP_003308703.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sebaldella termitidis ATCC 33386]
 gi|268614404|gb|ACZ08772.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Sebaldella termitidis ATCC 33386]
          Length = 444

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 118/327 (36%), Gaps = 64/327 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +             +VN  E EP    D+ +MR + + LI+G  I +  + A 
Sbjct: 20  FPTHLKMTK-------EVGTFIVNGAECEPLLEVDKFLMREKTYELIKGMEIIAGNLKAA 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              + ++ ++  E + L   + E               D ++ +      Y  G+E  ++
Sbjct: 73  RVVLGLKKKYKVEIKKLSETIKEL--------------DSNVELFLMDNFYPAGDEQIMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + + GK   P    P   +       T V+NV ++  V   +            E     
Sbjct: 119 KDITGKS-IPAGGIPLDVD-------TVVSNVGTVINVYEAIE-----------EKPVTK 159

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  S+ G VN P  +E  +  +F+E I++  G     +    AVI GG          M 
Sbjct: 160 KYVSVLGEVNNPVMLEVPIGTSFEECIKRAGGVKIKNY----AVIEGGP---------MM 206

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM- 358
           G I+  D L E      T A+I++     +IK   R      +ES   C  CR  T    
Sbjct: 207 GKIVHRDELAEKAVIKTTGALIILPEDHYVIKRKERPEAHILNESRAACIQCRMCTDMCP 266

Query: 359 ----------MRVMERLVKGIAQKREI 375
                      RVM  +  G   +  +
Sbjct: 267 RYLIGHKLRPHRVMRAMGMGEQDEEIL 293


>gi|237731407|ref|ZP_04561888.1| electron transport complex protein RnfC [Citrobacter sp. 30_2]
 gi|226906946|gb|EEH92864.1| electron transport complex protein RnfC [Citrobacter sp. 30_2]
          Length = 564

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIERDGWTDYR---SHSREELIARIHQYGVAGLGGAGFPTGVKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      + +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILLGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A + +                 DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLAD---------------SHDISLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   +   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAIKRAVIDG----------EPITERVVTLTGEAVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+                VI GG  +                       
Sbjct: 310 VWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF--TLPWLDVP----------- 352

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                  +V   +  +  +   +    + + C +C+ C +      + + +    KG   
Sbjct: 353 -------VVKITNCLLAPSASEMGETPEEKGCIRCSACADACPADLLPQQLYWFSKGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A AW       L++ FR  
Sbjct: 406 --DKATAHNIADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|328947363|ref|YP_004364700.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           succinifaciens DSM 2489]
 gi|328447687|gb|AEB13403.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           succinifaciens DSM 2489]
          Length = 449

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 106/320 (33%), Gaps = 59/320 (18%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           G++ ++  +K +G+ G GGA F   +K +       D   Y++VNA E EP    D   M
Sbjct: 119 GKEKVLERIKDAGIVGMGGASFPAHVKLNPPEDKEID---YVLVNAAECEPYLTCDERTM 175

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
              P  LI+G  I    +GA    I +       + SL+  +             + GY 
Sbjct: 176 IETPEKLIDGLAIILNLVGA-AGIIALEDNKAYIKPSLEKII------------VEKGYA 222

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            DI V      Y  G E  ++ S  G +         PA+ G+      ++NV ++  + 
Sbjct: 223 DDIRVMLVKTKYPQGSEKFIVSSCLGVEI---PSGKLPADAGV-----IISNVGTVCAIS 274

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
              R G         E +    L    G V  PC +   +     +L  +         +
Sbjct: 275 DAFRLGKPLI-----ERS----LTISGGAVENPCNLRVPVGTMISDLSPEF---FSLKEN 322

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD-RSTDIIKAIWRLS 337
           + + +I GG  +                         GT+ +  +    T ++       
Sbjct: 323 SAVKIISGGPMMGFTMPDMNFPV------------AKGTSGITFLTKDETYLVD------ 364

Query: 338 VFYKHESCGQCTPCREGTGW 357
                E C  C  C      
Sbjct: 365 ----EEQCIGCGMCVSVCAM 380


>gi|120553868|ref|YP_958219.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter
           aquaeolei VT8]
 gi|120323717|gb|ABM18032.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter
           aquaeolei VT8]
          Length = 609

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 107/323 (33%), Gaps = 64/323 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  R+ ++  ++ +G+ G GGAGF T +K         D    L++N  E EP    D  
Sbjct: 121 QLDREAVLQRIREAGISGMGGAGFPTDIKLRPPRDRKVD---TLILNGAECEPYITADDM 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            MR +   ++ G  + ++ +      + +         +++ AV                
Sbjct: 178 TMREQAAEVVAGLKVMAWILRPSRCVVGIEDNKPEAIAAMRKAVAGTQ------------ 225

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I +      Y  G E  L++ L G++         PA++G+        N+ +   
Sbjct: 226 ----IEIAVVPTKYPSGGEKQLIQILTGQEV---PSGGIPADIGV-----MCQNIGTAVA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +  G              +++ +++G  V  P   E  +      L+E        
Sbjct: 274 VGRAVFEG----------KPLISRVVTVTGEAVREPGNFEVLIGTPIHHLLETAG----M 319

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA-IW 334
             + L  +I GG  +                        L T +V V+  +  +I A   
Sbjct: 320 AQERLERLILGGPMMGY---------------------TLTTDSVPVVKTTNCVIAATAA 358

Query: 335 RLSVFYKHESCGQCTPCREGTGW 357
            L      + C +C  C E    
Sbjct: 359 ELPAPPPEQPCIRCGQCAEACPM 381


>gi|257466640|ref|ZP_05630951.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917794|ref|ZP_07914034.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691669|gb|EFS28504.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 436

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 130/384 (33%), Gaps = 71/384 (18%)

Query: 29  WDNVDKILEKGRDWI---INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI       +   +  ++  G+ G GGA F T +K +       D    L++N  
Sbjct: 107 WAELSKIENWETAEVKDLLAMIREKGIVGIGGASFPTHVKLNPPADTKID---TLLLNGA 163

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P ++IEG  I    +G   A I +         +++ A +    
Sbjct: 164 ECEPYLNSDNRLMLENPSSIIEGVKIIKKILGVSTAIIGIEENKPEAIANMKKAAE---- 219

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++++   +  P  K   P++VG+    
Sbjct: 220 --------GTG----IEIAPLKTKYPQGGEKQLIKAVL-NREVPSGK--LPSSVGV---- 260

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   L  G               K+ ++SG  +  P  V  ++   F  
Sbjct: 261 -VVQNTGTAAAIYEGLVHGTPLI----------EKVVTVSGKAIATPKNVRIAIGTPFSY 309

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L+   CG  R   D L   + GG  +    A     A +             +  + +  
Sbjct: 310 LL-DACGVDREKVDKL---VMGGPMMGM--AQFSEDAPVIKGT---------SGLLALTT 354

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
             T+           YK ++C  C  C       +   +  RL      +   +  Y + 
Sbjct: 355 EETNP----------YKPKACIGCGKCVSVCPMSLEPVMFARLAAFQQWEGLQN--YHLM 402

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 403 DCIECGS-CAFICPANRPLTEAIK 425


>gi|331001661|ref|ZP_08325184.1| hypothetical protein HMPREF0491_00046 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413382|gb|EGG92749.1| hypothetical protein HMPREF0491_00046 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 448

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 116/363 (31%), Gaps = 83/363 (22%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            +  +   +      +   +D I   VK +G+ G GGAGF T +K   +     D  +Y+
Sbjct: 104 KEYNAIEGFGEKRDYIRLSKDKIRKIVKDAGIVGLGGAGFPTHVK---ISPKNEDEINYI 160

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           +VN  E EP    D  +M  EP  +IEG  I           I +             A+
Sbjct: 161 IVNGAECEPYLTSDYRLMMEEPKKIIEGLKIILQLFPNATGIIGIENNKP-------KAI 213

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
           ++  A            +  I V      Y  G E +L+ +   +K    L    PA+VG
Sbjct: 214 EKLKAFAQ--------NEPKIEVVELYTKYPQGGERSLIYACTKRKLNSSL---LPADVG 262

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMS 259
                  V+NV+++  +   +                  ++ +++G  +  P        
Sbjct: 263 -----CIVDNVDTVVSIYNAVAESTPLIR----------RILTVTGDAITTPQNFNVRTG 307

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
             + ELIE   G      +    ++ GG                           +G A 
Sbjct: 308 TNYQELIEAAGG----FKEEPRKILSGGP-------------------------MMGQA- 337

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHE-------SCGQCTPCREGTG-------WMMRVMERL 365
             +      + KA   ++ F   E        C +C  C +           M + +   
Sbjct: 338 --LFTLDIPVTKASSSITTFLHDEVEENPETPCIKCGRCIDVCPSYLVPVLMMEKALNDD 395

Query: 366 VKG 368
            +G
Sbjct: 396 TEG 398


>gi|260779357|ref|ZP_05888249.1| electron transport complex protein RnfC [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605521|gb|EEX31816.1| electron transport complex protein RnfC [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 923

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 111/322 (34%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I  ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QRTPDELIEIIRQAGVSGMGGAGFPTAKK----IQAGLARTEILIVNAAECEPYITADDM 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     +I+G  I    +      I +     +  ++L+ A +               
Sbjct: 186 LMQEHADEVIKGIEIVEHILNPKLTIIGIEDNKPQAIKALEQAAEH-------------- 231

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI++      Y  G E  L++ L  K+         PA++GL      V NV S+  
Sbjct: 232 --KDIVIRVIPTKYPSGGEKQLIKILTNKEVPAN---SIPADIGL-----LVQNVGSLQA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V+  +      L+++       
Sbjct: 282 IKRAVCDGEPLVD----------RIVTLTGDTFKQPRNVKALIGTPVQSLLDEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+    +
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHANVPITKTANCILAPTRK 367

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                ++E +C +C  C E   
Sbjct: 368 EISPNQYEMACIRCGQCAEACP 389


>gi|224369472|ref|YP_002603636.1| RnfC1 [Desulfobacterium autotrophicum HRM2]
 gi|223692189|gb|ACN15472.1| RnfC1 [Desulfobacterium autotrophicum HRM2]
          Length = 455

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 131/359 (36%), Gaps = 60/359 (16%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +  I +   D I   + A+G+ G GGA F T +K   +          L+VN  E EP  
Sbjct: 131 LSTIPDYSPDEIARLIHAAGIVGLGGAAFPTHVK---VMPNDKRLIDSLLVNGCECEPYL 187

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M+  PH ++ G ++A  A+ A   FI +        E+L+ A            
Sbjct: 188 TCDYRLMKEAPHAIVAGALLAGRAVSAKEIFICIEDNKPEAIEALELATRNT-------- 239

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    + V      Y  G E  L++++             P++VG+      ++NV
Sbjct: 240 --------VVQVAVVRTKYPQGSEKQLVKAVLNLDV---PLGGLPSDVGV-----ALSNV 283

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIEKHC 270
            ++A V   + +                ++ S++ G +  P  +   + I+  ELI   C
Sbjct: 284 GTMAAVARAVIKKGPLTH----------RIVSVTGGGIVTPKNIFTPIGISMGELI-DFC 332

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL-----KEMGSGLGTAAV----- 320
           GG+    ++   +I GG  +    +           G+      E  SG  TA V     
Sbjct: 333 GGLT---EDAARIIAGGPMMGFAFSDLTTPVTKGTSGITILTHAETASGEETACVRCGRC 389

Query: 321 ---IVMDRSTDIIKAIWR-----LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQ 371
                M+     +    R     L+  Y   +C +C  C       +++++ +  G AQ
Sbjct: 390 VEACPMNLVPTRLAMAARYKNTALARQYNINACFECGSCTYVCPANIKLVQLIRTGKAQ 448


>gi|255505118|ref|ZP_05344567.3| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella
           formatexigens DSM 14469]
 gi|255269103|gb|EET62308.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bryantella
           formatexigens DSM 14469]
          Length = 463

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 102/329 (31%), Gaps = 60/329 (18%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
                    +  +  I++ ++ +G+ G GGAGF T +K   MPK   D   +++VN  E 
Sbjct: 132 GLGQYRDYTKMSKQEILDAIREAGIVGLGGAGFPTHVK--LMPKNP-DAIDHIIVNGAEC 188

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +M   P  ++ G  +           I V        ++LQ  V       
Sbjct: 189 EPYLTSDYRMMIENPEQIVGGLKVMLQLFDNAKGVIAVEANKPTGIKNLQELVKN----- 243

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                     +  I V      Y  G E  L+ ++ G+K         PA+ G       
Sbjct: 244 ----------EPRIEVVPLKTKYPQGAERNLIYAVTGRKIN---STKLPADAG-----CI 285

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
           V+NV+++  +   +                G         +N P      +   F EL E
Sbjct: 286 VDNVDTVIAIHMAVCEKTPLMRRIVTVTGSG---------INEPKNYNVKIGTCFAELAE 336

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              G      + +  VI GG  +            +             +A   +M    
Sbjct: 337 ASGG----LKEGVKKVIAGGPMMGMSIPS--LDVPIVKTS---------SALTCLMQDD- 380

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                       ++  +C +C  C +   
Sbjct: 381 ---------VERFEETACIRCGRCVQVCP 400


>gi|302389136|ref|YP_003824957.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199764|gb|ADL07334.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 441

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 126/339 (37%), Gaps = 62/339 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           II  VK +G+ G GGAGF   +K +        +   ++ N  E EP    ++ +++H P
Sbjct: 7   IIEAVKDAGVVGAGGAGFPAHIKLNA-------KCEVVIANMAECEPLLFTNQALIQHHP 59

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +++G  IA  A GA    I ++ ++   R+SL+  +               GY  +I+
Sbjct: 60  DEVLQGLQIAMQATGAKKGVIALKKKYEACRKSLEGKI---------------GYYENIV 104

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +H     Y  G+E  +++ +  K+  P      P++VG       V+NVE++  +    R
Sbjct: 105 IHELEDFYPAGDEHVMVKEVL-KRTIPMSG--IPSDVG-----AVVHNVETLYNIKRAYR 156

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
            G               K  +++G V +P  V+  + + F EL++   G     +  +  
Sbjct: 157 DG----------KPVTEKFVTVAGAVRHPLVVKVPIGLRFSELLDLAGGPAVKDYILVHG 206

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
               GS V                 L      +   A   + R   +   + R       
Sbjct: 207 GPMMGSEV-----DAGDTVTKTTSAL----LVIPDGAFPHISRRARMEVLLKR-----AK 252

Query: 343 ESCGQCTPCREGTGWM--------MRVMERLVKGIAQKR 373
            +C QC  C +              R+M  +  G+    
Sbjct: 253 AACCQCRICTDMCPRYLLGHSLEPHRIMRTVSYGLPDTE 291


>gi|42526350|ref|NP_971448.1| Na(+)-translocating NADH-quinone reductase, A subunit [Treponema
           denticola ATCC 35405]
 gi|41816462|gb|AAS11329.1| Na(+)-translocating NADH-quinone reductase, A subunit [Treponema
           denticola ATCC 35405]
          Length = 480

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 118/355 (33%), Gaps = 50/355 (14%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            ++  +  V+ +G+ G GGA F T +K S  P    +   Y++ N  E EP  C D   +
Sbjct: 119 TKEEALKRVRDAGITGMGGASFPTHVKLSPPPDAKIE---YVIANGAECEPYLCTDAATI 175

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             +  ++++G  I    +GA    I +          L+ A+ +  A      N      
Sbjct: 176 FSDSDSIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISKIKA------NPIAAGA 229

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            DI V      Y  G E  L +++   +  P    PF   +G       + NV ++  + 
Sbjct: 230 YDISVQLCKTKYPQGGEKTLTDAVV-NREIPSGGLPF--QIG-----CVIQNVGTLKAIS 281

Query: 219 TILRRGASWYSGFGRENNRGTKLFSI-SGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              R G               +  +I  G    P  V   +     +LI      +    
Sbjct: 282 EAFRLGKPLID----------RALTIGGGACEKPLNVIAPIGTCVGDLI----PSVVSLK 327

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYD----------GLKEMGSGLGTA-AVIVMDRS 326
             ++ +I GG  +             +             L+E    +G    + V    
Sbjct: 328 PGVVKIISGGPMMGFAMKNADFPIQKNTSGVLFLTKEEISLEEESPCIGCGKCIDVCSCH 387

Query: 327 TDIIKAIWRLSVFYKHES-------CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
              +  +  L+     E+       C +C  C       +++++R+  G    RE
Sbjct: 388 LSPVLIVRALNAGNTEEAIRCGLLDCVECGTCAYTCPARIKLVQRVKIGKQIARE 442


>gi|291522098|emb|CBK80391.1| electron transport complex, RnfABCDGE type, C subunit [Coprococcus
           catus GD/7]
          Length = 442

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 116/351 (33%), Gaps = 63/351 (17%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-RDI 97
            ++  I  VK SGL G GGAGF   +K +       D+  YL +NA E EP    D R+I
Sbjct: 127 SKEEFIEAVKQSGLVGLGGAGFPAHIKLN-----PKDKIEYLCINAAECEPYITADVREI 181

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M +    ++ G       +G   A I +        + +Q                K   
Sbjct: 182 MENH-ENVLYGISQVMKYVGIDKALIGIEDNKPEAIKLMQE---------------KTAQ 225

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
             ++ V      Y  G E  L+E   G++  P      P++VG       V NV S   +
Sbjct: 226 MSNVEVVSLPSRYPQGAEKVLIEQCTGRQVPP---GKLPSDVG-----CIVMNVASAGFL 277

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGG 276
              L+ G              TK  ++ G  +     V   +     ++I   CGG +G 
Sbjct: 278 GGYLKNGIPLT----------TKRVTVDGSAITEAKNVRVPIGAPIKDII-AFCGGYKGT 326

Query: 277 WDNLLAVIPGGSSVP----------------CLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
              L   I GG  +                  L   +     ++       G  +    +
Sbjct: 327 PAKL---ISGGPMMGTALMTDDFPVLKQNNAFLAFDEAEAKSLEPTACISCGRCVNACPM 383

Query: 321 IVMDRSTDIIKAIWRL--SVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
            +M    +      R+     Y   +C +C  C        ++++ +  G 
Sbjct: 384 NLMPTKLEAATIYKRVDDLKKYSVMTCMECGCCAFVCPANRKLVQSMRIGK 434


>gi|310777823|ref|YP_003966156.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747146|gb|ADO81808.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 436

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 136/387 (35%), Gaps = 77/387 (19%)

Query: 29  WDNVDKI--LEK-GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI  LEK  ++ ++  V+  G+ G GGA F T +K +    V  D    L++N  
Sbjct: 107 WAELTKIQNLEKATKEELLAMVREKGIVGVGGACFPTHIKLNPPKDVAID---VLLLNGA 163

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M  EPH ++EG  I +  +G   A + +        E +  A +    
Sbjct: 164 ECEPYLNSDNRLMIEEPHKIVEGIKIINKILGISRAVVGIEDNKTEAIEKMTKACE---- 219

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I V      Y  G E  L++++  +          P+ VG+    
Sbjct: 220 --------GTG----IEVAMLKTQYPQGGEKQLIKAVLDRDV---PSGGLPSAVGV---- 260

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  +   +   L  G               K+ ++SG  V  P  ++  +   F E
Sbjct: 261 -VVQNTGTAGAIYEGLVEG----------KPLIEKIVTVSGKAVERPSNLKVRIGTMFSE 309

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++  + G  R   D L   + GG  +    A       +            GT+ ++ + 
Sbjct: 310 IL-DYAGTNRESMDKL---VMGGPMMGM--AQHTENVPV----------VKGTSGLLALT 353

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVS 382
           +           +  YK +SC  C  C +      +  +  +L +    +        + 
Sbjct: 354 KEE---------TNPYKPKSCILCGKCVKACPINLLPNMYAKLARFKQWEEMGKN--HLM 402

Query: 383 KNIEGRT---ICALGDAAAWPIQGLIK 406
             IE  +   IC     A  P+   IK
Sbjct: 403 DCIECGSCSYICP----ANRPLTEAIK 425


>gi|262381166|ref|ZP_06074304.1| electron transport complex protein [Bacteroides sp. 2_1_33B]
 gi|301311165|ref|ZP_07217093.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           sp. 20_3]
 gi|262296343|gb|EEY84273.1| electron transport complex protein [Bacteroides sp. 2_1_33B]
 gi|300830739|gb|EFK61381.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           sp. 20_3]
          Length = 443

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 119/364 (32%), Gaps = 66/364 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           + + K        I++++ ASG+ G GGA F T +K    P   ++    +++NA E EP
Sbjct: 113 ETLVKECALSSKEIVDKIAASGIVGLGGATFPTQVKLMPPPGNKAEI---VIINAVECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M  +   ++ G  I   A+  + A I +          LQ           L
Sbjct: 170 YLTSDHSLMLEKGEQILVGVTILMKAVNVNKAVIGIENNKPDAIAHLQK----------L 219

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
             N K      I +      Y  G E  L++++  ++ +       P + G       V 
Sbjct: 220 AVNYK-----GIEIMPLKVQYPQGGEKQLIDAVIRRQVK---SGALPISAG-----AVVQ 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   ++          +      ++ +I+G  V  P      M      LIE 
Sbjct: 267 NVGTAYAVYEAVQ----------KNKPLFERVVTITGKAVANPSNFLVRMGTPISCLIEA 316

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             G           +I GG  +    A       +            G++ V+++ +   
Sbjct: 317 AGGLPENTGK----IIGGGPMMG--KALISAEVPVCK----------GSSGVLLLTKEES 360

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
           + K I           C +C  C       +     +     Q  E+     ++  IE  
Sbjct: 361 VRKPIR---------DCIRCAKCVGVCPMGLNPTLLMNATEFQNWELAEKNYITDCIE-- 409

Query: 389 TICA 392
             C 
Sbjct: 410 --CG 411


>gi|296102657|ref|YP_003612803.1| electron transport complex protein RnfC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057116|gb|ADF61854.1| electron transport complex protein RnfC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 607

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 131/398 (32%), Gaps = 81/398 (20%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
              + R  W +      + R+ +I+ +   G+ G GGAGF TG+K     +   D+   L
Sbjct: 116 DRWIERDGWSDYR---ARRREALIDRIHQFGVAGLGGAGFPTGVKL----RGGGDKIQTL 168

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           ++NA E EP    D  +M+     ++EG  I +  +      I +     +    L+A +
Sbjct: 169 IINAAECEPYITADDRLMQDCAAQVVEGIRILAHVLQPREVLIGIEDNKPQAISMLRAVL 228

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                              DI +      Y  G    L + L GK+          +++G
Sbjct: 229 AG---------------SHDISLRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIG 270

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMS 259
           +      + NV +   V   +  G               ++ +++G  V+ P  V   + 
Sbjct: 271 V-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGESVSRPGNVWARLG 315

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTA 318
                L+E+              VI GG  +   LP   +    +    L    + +G  
Sbjct: 316 TPVRHLLEQAGFCPGSD----QMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSPTEMG-- 369

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREID 376
                                 + + C +C+ C +      + + +    KG     +  
Sbjct: 370 -------------------EEQEEKGCIRCSACADACPADLLPQQLYWYSKGQLH--DKA 408

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             + ++  IE    C    A AW       L++ FR  
Sbjct: 409 QAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|217967478|ref|YP_002352984.1| electron transport complex, RnfABCDGE type, C subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217336577|gb|ACK42370.1| electron transport complex, RnfABCDGE type, C subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 437

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/340 (20%), Positives = 110/340 (32%), Gaps = 65/340 (19%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
              + I + ++ +G+ G GGA F T +K S  P+   D    +++N  E EP    D  +
Sbjct: 120 LSPEEIKSRIREAGIVGLGGAAFPTHVKISPPPEKKID---TVILNGAECEPYLTIDYRL 176

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M  +P  +IEG  I  + +G     I +        E L+                    
Sbjct: 177 MLEKPELIIEGLHILMYVLGVKRGIIGIEDNKKDAVEVLKK-----------------YA 219

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D DI +      Y  G E  L++++ G +  P    P             VNNV +   +
Sbjct: 220 DSDIEIVTLPTKYPQGSEKHLIKAVLG-REVPSGGLP-------MDVGVVVNNVGTAVAI 271

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
               R G           +RG  +      VN    +E  +     +LIE   G      
Sbjct: 272 AEHFRTGLPLI-------SRGVTVTG--EGVNSSKNLEVLIGTPVIKLIEYVGGFKGKPG 322

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG  +    A       +            GT+ V+V               
Sbjct: 323 KILF----GGPMMGV--AIYDLNTPI----------VKGTSGVVVFPEDK---------V 357

Query: 338 VFYKHESCGQCTPCREGTGW--MMRVMER-LVKGIAQKRE 374
            +Y    C +C  C E      M   + R + KG   + E
Sbjct: 358 EYYDPIPCVRCGKCLEVCPMGLMPTTLARYVKKGKLVEAE 397


>gi|331083159|ref|ZP_08332275.1| hypothetical protein HMPREF0992_01199 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404548|gb|EGG84088.1| hypothetical protein HMPREF0992_01199 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 449

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 113/319 (35%), Gaps = 62/319 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            ++ II  ++  GL G GGAGF T  K+    K        L++NA E EP    D  +M
Sbjct: 126 TQEEIIAGIRDGGLTGMGGAGFPTHKKYETDKK-----IDALLINAAECEPFLTCDYRLM 180

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
               + +  G  +   A GA  A++ +        + L   ++                 
Sbjct: 181 LEYSYAVANGMRLLLKASGAPKAYLCMEDNKPEAAKVLGKILENTK-------------- 226

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            DI V      Y  G E  L++++ G++         PA  G       V+NV +     
Sbjct: 227 -DIEVKVLPTQYPQGGERQLIQAVLGREV---PMGGLPAEAG-----AIVSNVGTAKATA 277

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +L                  ++ +++G V  P      +  +  EL+E  CGG+    +
Sbjct: 278 DMLLGKTPLIR----------RIVTVTGCVKNPGNYLVPIGTSAKELVE-LCGGVTVKNN 326

Query: 279 NLLAVIPGGS-SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               VI GG  + PC+ +     + + Y           T+ ++V+  S           
Sbjct: 327 R---VIAGGPMTGPCVASDWNGESELFYVT-------KNTSGILVLPDSQ---------- 366

Query: 338 VFYKHESCGQCTPCREGTG 356
             Y+ + C +C  C     
Sbjct: 367 --YEEQPCIRCAGCESVCP 383


>gi|146279225|ref|YP_001169383.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557466|gb|ABP72078.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 519

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/253 (22%), Positives = 92/253 (36%), Gaps = 38/253 (15%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + I  +V  +G+ G GGA F + +K +   +      H LV+N  E EP    D  +M
Sbjct: 134 TPEEIAAKVAEAGIVGMGGATFPSAVKLNLRARYD---LHTLVINGAECEPYLTCDDRLM 190

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     + +G  I + A+G     + +         ++Q                    D
Sbjct: 191 RERAEEIADGIGIMARALGVRQIVVAIESNKAEAISAMQR--------------FDRALD 236

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
           + + V      Y  G E  L++ L G++   R      A++G+      V+N  +   V 
Sbjct: 237 LPMRVQVVPTQYPMGSEKHLVKILTGRETPARA---LTADLGV-----VVHNAATAHAVH 288

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
             +R G    S     + RG         +  P  V   +     E+I  HCGG+    D
Sbjct: 289 LAVRYGEPLLSRVVTVSGRG---------IRRPANVRVLIGTPVAEVI-AHCGGLTEEPD 338

Query: 279 NLLAVIPGGSSVP 291
            LL    GG  + 
Sbjct: 339 RLLL---GGPMMG 348


>gi|170717802|ref|YP_001784865.1| electron transporter subunit RnfC [Haemophilus somnus 2336]
 gi|168825931|gb|ACA31302.1| electron transport complex, RnfABCDGE type, C subunit [Haemophilus
           somnus 2336]
          Length = 706

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/403 (14%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++   L    +R     ++  L   R+ +I+++  +G+ G GGA F T  K     +  +
Sbjct: 114 IEADGLEQWRNR---QPIEDYLTLSREQLIDKIYQAGIAGLGGAVFPTAAK----IRSAN 166

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           ++   L++N  E EP    D  +MR     +IEG  I  + +    A I +         
Sbjct: 167 NKVKLLIINGAECEPYITCDDRLMRDYSEEIIEGIRILRYILRPEKAVIAIEDNKPEAIA 226

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+ ++                   DI +      Y  G    L++ L G +        
Sbjct: 227 VLRQSLHGAD---------------DIDIRVIPTKYPSGAAKQLIQILTGFEV---ASGQ 268

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      ++NV +   +   +                  ++ +++G  +     
Sbjct: 269 RSSSIGI-----LMHNVGTAFAIKRAIINDEPLI----------ERVVTLTGDKIAQKGN 313

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +      ++ +        +D+   V  GG  +  +            + L     
Sbjct: 314 FWVPLGTPISHVLTQVA----YQYDSRFPVFMGGPMMGFILPNLYAPVTKATNCLLAPDH 369

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                                        +SC +C+ C +      M + +    +    
Sbjct: 370 F--------------------EYEPPATEQSCIRCSACSDACPVHLMPQQLYWFARAEDH 409

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
           K+  +  Y + + IE    C L    A+       LI+ FR  
Sbjct: 410 KKSEE--YALKECIE----CGLC---AYVCPSHIPLIQYFRQE 443


>gi|261339612|ref|ZP_05967470.1| electron transport complex protein RnfC [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318434|gb|EFC57372.1| electron transport complex protein RnfC [Enterobacter cancerogenus
           ATCC 35316]
          Length = 678

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 129/404 (31%), Gaps = 81/404 (20%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG K     +   
Sbjct: 110 IDADGEDRWIDRDGWSDYR---AQSREALIERIHQFGVAGLGGAGFPTGTKL----RGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPRDVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            L+A +                   DI +      Y  G    L + L GK+        
Sbjct: 223 MLRAVLAG---------------SHDIGLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V+ P  
Sbjct: 265 RSSDIGV-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGESVSRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMG 312
           V   +      L++               VI GG  +   LP   +    +    L    
Sbjct: 310 VWARLGTPVRHLLDHAGFCPGSD----QMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSS 365

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIA 370
           + +G                        + + C +C+ C +      + + +    KG  
Sbjct: 366 TEMG---------------------EEQEEKGCIRCSACADACPADLLPQQLYWYSKGQL 404

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
              +    + ++  IE    C    A AW       L++ FR  
Sbjct: 405 H--DKAKAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|325849927|ref|ZP_08170966.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325479951|gb|EGC83034.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 438

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 117/353 (33%), Gaps = 64/353 (18%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
             +    ++ I+  +K +GL G GGA F   +K+S      +     +++N  E EP   
Sbjct: 115 KDVTNLTKEKIVEAMKENGLVGMGGAAFPAHIKYS-----PNKAVDTVIINGAECEPYVT 169

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  I++ +P  +++   +   A+ A    I +        E ++ A+ +         N
Sbjct: 170 CDDYILKTKPEIIVDALELLVKAVDAKKGIIAIEDNKQESIEKVRKAIAD--------KN 221

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
           S       + +      Y  G+E  ++ ++   +  P      P +VG+      V+NV 
Sbjct: 222 SP-----KLELATMVTKYPQGDEKRIINAVL-HREVP--SGGLPMDVGV-----IVSNVS 268

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           S   V   +  G      +      G         +  P      +  +F+++IE+  G 
Sbjct: 269 SANAVYEAVYYGKPLIERYMTVTGHG---------IKNPSNFLVRLGTSFEDMIEEAGGM 319

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
                     VI GG  +        +                 +  ++V+++       
Sbjct: 320 TEDAGK----VINGGPMMGIAQPNINQPVE------------KASNCILVLNKEESKAPV 363

Query: 333 IWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGI--AQKREIDLLYEV 381
                       C +C  C        M  ++ +        + +++ +L  +
Sbjct: 364 T---------NPCIRCAKCVNVCPVGLMPLLIHKFSLKEKFDKAQDLHILDCI 407


>gi|311279508|ref|YP_003941739.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           cloacae SCF1]
 gi|308748703|gb|ADO48455.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           cloacae SCF1]
          Length = 679

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 125/398 (31%), Gaps = 81/398 (20%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
                R  W +      K RD +I  +   G+ G GGAGF TG K     +   D+   L
Sbjct: 116 DTWFERDGWSDWQ---SKTRDTLIERIHQFGVAGLGGAGFPTGTKL----RGGGDKIDTL 168

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           ++NA E EP    D  +M+     ++EG  I +  +      I +     +    ++A +
Sbjct: 169 IINAAECEPYITADDRLMQDCAAQIVEGVRILAHILQPRQVLIGIEDNKPQAISMMRAVL 228

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
            + +                I +      Y  G    L + L GK+          +++G
Sbjct: 229 ADAHG---------------ISLRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIG 270

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMS 259
           +      + NV +   V   +  G               ++ +++G  V  P  V   + 
Sbjct: 271 V-----LMQNVGTAFAVKRAIVDGEPLT----------ERVVTLTGESVGRPGNVWARLG 315

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTA 318
                L+                VI GG  +   LP   +    +    L    S +G  
Sbjct: 316 TPVQHLLADAGFCPSAE----QLVIMGGPLMGFTLPWLDVPVVKITNCLLAPSPSEMG-- 369

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREID 376
                                   + C +C+ C +      + + +    KG     +  
Sbjct: 370 -------------------EPQDEKGCIRCSACADACPADLLPQQLYWFSKGQQH--DKA 408

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             + +S  IE    C    A AW       L++ FR  
Sbjct: 409 QTHNLSDCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|303240126|ref|ZP_07326647.1| electron transport complex, RnfABCDGE type, C subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302592395|gb|EFL62122.1| electron transport complex, RnfABCDGE type, C subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 439

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 117/374 (31%), Gaps = 63/374 (16%)

Query: 24  MSRGHWDNVDKILE----KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           +       VD  ++       +  I  ++ SGL G GGAGF   +K S        +   
Sbjct: 99  IKTDGMQKVDASIKPPKYTNCEEFIGAIRKSGLVGLGGAGFPAHIKLS---PPQGKKIDT 155

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+VNA E EP    D   +      +++G  I   A+      I +        +     
Sbjct: 156 LIVNAAECEPFITSDYREIIENSWNVMDGIDIVIEALKIKNVLIGIEDNKPEAIK----- 210

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                    L S S       I V      Y  G E  L+ +  G+K         PA+V
Sbjct: 211 -----EMTHLASKSD-----KINVVELKSRYPQGAEKMLIYATTGRKV---PSGKLPADV 257

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESM 258
           G+      V NV SI+ V   ++ G               K  ++ G  V  P  VE  +
Sbjct: 258 GV-----IVMNVNSISFVSEYIKTGMPLIK----------KRVTVDGSAVKNPSNVEVLI 302

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM------- 311
             +  ++ E   G           V+ GG  +           +   + L          
Sbjct: 303 GTSLSDVFEFTGG----FKVPPAKVLMGGPMMGIAQFSLETSVLKHTNALLAFDEKEAVL 358

Query: 312 ---------GSGLGTAAVIVMDRSTDIIKAIWRLSVF--YKHESCGQCTPCREGTGWMMR 360
                    G   G   + ++    +       +     Y    C +C  C       ++
Sbjct: 359 PKSTACIRCGRCAGACPMNLLPLYLNNNSLKENIEELKKYHVSDCIECGSCSYSCPAKIQ 418

Query: 361 VMERLVKGIAQKRE 374
           +++ +  G AQ R+
Sbjct: 419 LVQSIRLGKAQLRQ 432


>gi|257456519|ref|ZP_05621715.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           vincentii ATCC 35580]
 gi|257446179|gb|EEV21226.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           vincentii ATCC 35580]
          Length = 424

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 109/351 (31%), Gaps = 50/351 (14%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            ++  +  ++ +G+ G GGA F   +K S       D   Y++ NA E EP  C D   M
Sbjct: 85  TKEDALKRIREAGITGMGGASFPVHVKLSPPKDAKID---YILGNAAECEPYLCTDAATM 141

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
            H   T+I+G  I     GA    I +           + A+ +         N      
Sbjct: 142 YHSAETIIDGMAIIMHVTGADKGIIALEDNKTHLVPVFEKAIAKIKQ------NPVGPGA 195

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            DI V      Y  G E  L  ++ G +  P    PF   VG       V NV ++  + 
Sbjct: 196 YDISVELCKTKYPQGGEKNLTSAVVG-REIPSGGLPF--QVG-----CIVQNVGTMKAIS 247

Query: 219 TILRRGASWYSGFGRENNRGTKLFSI-SGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              R+G               +  +I  G    P      +     +LI +    +    
Sbjct: 248 DAFRKGMPLID----------RPLTIGGGACENPINAIAPIGTCISDLIPE----VVRLK 293

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDG----------LKEMGSGLGTAAVIVMDRST 327
             +  +I GG  +             +  G          L E    +G    +      
Sbjct: 294 PGVTKIISGGPMMGFAMKSADFPVQKNTSGVLFLTREEVNLDEESPCIGCGKCVTHCSCQ 353

Query: 328 -DIIKAIWRLSVFYKHES-------CGQCTPCREGTGWMMRVMERLVKGIA 370
              +  I  L      E+       C +C  C       +++++R   G  
Sbjct: 354 LSPVLMIRALKANKLDEAVRCGLMDCVECGICSYVCPARIKLVQRFKVGKQ 404


>gi|325473292|gb|EGC76487.1| hypothetical protein HMPREF9353_02282 [Treponema denticola F0402]
          Length = 438

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 118/355 (33%), Gaps = 50/355 (14%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            ++  +  V+ +G+ G GGA F T +K S  P    +   Y++ N  E EP  C D   +
Sbjct: 77  TKEEALKRVRDAGITGMGGASFPTHVKLSPPPDAKIE---YVIANGAECEPYLCTDAATI 133

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             +  ++++G  I    +GA    I +          L+ A+ +  A      N      
Sbjct: 134 FSDSDSIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISKIKA------NPIAAGA 187

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            DI V      Y  G E  L +++   +  P    PF   +G       + NV ++  + 
Sbjct: 188 YDISVQLCKTKYPQGGEKTLTDAVV-NREIPSGGLPF--QIG-----CVIQNVGTLKAIS 239

Query: 219 TILRRGASWYSGFGRENNRGTKLFSI-SGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              R G               +  +I  G    P  V   +     +LI      +    
Sbjct: 240 EAFRLGKPLID----------RALTIGGGACEKPLNVIAPIGTCVGDLI----PSVVSLK 285

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYD----------GLKEMGSGLGTA-AVIVMDRS 326
             ++ +I GG  +             +             L+E    +G    + V    
Sbjct: 286 PGVVKIISGGPMMGFAMKNADFPIQKNTSGVLFLTKEEISLEEESPCIGCGKCIDVCSCH 345

Query: 327 TDIIKAIWRLSVFYKHES-------CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
              +  +  L+     E+       C +C  C       +++++R+  G    RE
Sbjct: 346 LSPVLIVRALNAGNTEEAIRCGLLDCVECGTCAYTCPARIKLVQRVKIGKQIARE 400


>gi|166031924|ref|ZP_02234753.1| hypothetical protein DORFOR_01625 [Dorea formicigenerans ATCC
           27755]
 gi|166028377|gb|EDR47134.1| hypothetical protein DORFOR_01625 [Dorea formicigenerans ATCC
           27755]
          Length = 439

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 111/330 (33%), Gaps = 64/330 (19%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +     + E  ++ I+N +  +G+ G GGAGF T +K S       D+  Y++ N  E E
Sbjct: 110 YSTPKAVSEMSKEEILNAIGDAGIVGMGGAGFPTKVKLS---PKEPDKIDYIIANCAECE 166

Query: 89  PGTCKD-RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           P    D R I+ H    L+EG  I             V        E L+          
Sbjct: 167 PYITADYRQILEHG-EELVEGMKIILRLFDNAKGLFGVEDNKPDCIEKLKE--------- 216

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
            L  +        + V      Y  G E  L+ +  G+     +    PA+ G       
Sbjct: 217 -LTKDEP-----RMEVLKLQTKYPQGGERQLIYATTGRAINSSM---LPADAG-----CV 262

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V+NV +I+ +   + +G               ++ ++SG  V+ P   +    +   ELI
Sbjct: 263 VDNVATISAIYRAVAKGEPSMD----------RIVTVSGDAVHEPGNFKAPFGMNQAELI 312

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           E   GG +   +    +I GG  +    +       +              ++++   + 
Sbjct: 313 E-AAGGYKVDPEK---IISGGPMMGF--SMFTVDVPVTKTS----------SSILCFTKD 356

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                        Y+  +C  C  C E   
Sbjct: 357 E---------VAQYEPTACINCGRCVEVCP 377


>gi|291549337|emb|CBL25599.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Ruminococcus torques L2-14]
          Length = 448

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 109/323 (33%), Gaps = 60/323 (18%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
                + + ++ +G+ G GGAGF T  K         +R   +++N  E EP     R +
Sbjct: 1   MDMKELSSILQQNGIVGAGGAGFPTYAKL-------DERAETIILNCAECEPLLRLHRQL 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           +      +I+   +    +GA    I ++  +    E+++A                +G 
Sbjct: 54  LEKYAKEIIDTFHMIGETVGAKEVIIGIKKAYTATIEAVKAV---------------MGQ 98

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
             ++ +      Y  G+E  L+    GK  +P      P   G+      V NVE++  V
Sbjct: 99  YPEVRLGLLDEVYPAGDEVVLIYETTGKVVRP---GGLPIESGV-----AVFNVETVYNV 150

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
                     Y     +     KL S+   V +P TV   +    +E++    G      
Sbjct: 151 ----------YRALNEKTPVEDKLVSVVAEVEHPITVRVPIGTPLEEVVALAGGVTTKD- 199

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR-- 335
                   GG  +  +             G         T A++V+ +   II+   +  
Sbjct: 200 ---AVYFVGGPMMGNI-------------GTGAQPVTKTTNAILVLPKDHHIIQKKLKKN 243

Query: 336 -LSVFYKHESCGQCTPCREGTGW 357
            + +      C QCT C +    
Sbjct: 244 SIDMKRAAACCCQCTMCTDLCPR 266


>gi|257452980|ref|ZP_05618279.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           3_1_5R]
 gi|317059520|ref|ZP_07924005.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp.
           3_1_5R]
 gi|313685196|gb|EFS22031.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp.
           3_1_5R]
          Length = 436

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 131/384 (34%), Gaps = 71/384 (18%)

Query: 29  WDNVDKILEKGRDWI---INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI       +   +  ++  G+ G GGA F T +K +       D    L++N  
Sbjct: 107 WAELSKIENWETAEVKDLLAMIREKGIVGIGGASFPTHVKLNPPADTKID---TLLLNGA 163

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P ++IEG  I    +G   A I +         +++ A +    
Sbjct: 164 ECEPYLNSDNRLMLENPSSIIEGVKIIKKILGVSTAIIGIEENKPEAIANMKKAAE---- 219

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++++   +  P  K   P++VG+    
Sbjct: 220 --------GTG----IEIAPLKTKYPQGGEKQLIKAVL-NREVPSGK--LPSSVGV---- 260

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   L  G               K+ ++SG  +  P  V  ++   F  
Sbjct: 261 -VVQNTGTAAAIYEGLVHGTPLI----------EKVVTVSGKAIATPKNVRIAIGTPFSY 309

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L+   CG  R   D L   + GG          M  A    +     G+   +  + +  
Sbjct: 310 LL-DACGVDREKVDKL---VMGGP--------MMGMAQFSEEAPVIKGT---SGLLALTT 354

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
             T+           YK ++C  C  C       +   +  RL      +   +  Y + 
Sbjct: 355 EETNP----------YKPKACIGCGKCVSVCPMSLEPVMFARLAAFQQWEGLQN--YHLM 402

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 403 DCIECGS-CAFICPANRPLTEAIK 425


>gi|313886233|ref|ZP_07819962.1| electron transport complex, RnfABCDGE type, C subunit
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924304|gb|EFR35084.1| electron transport complex, RnfABCDGE type, C subunit
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 450

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 122/374 (32%), Gaps = 50/374 (13%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + G    D + +     +   +E     II+ +   G+ G GGA F T +K S  P   +
Sbjct: 100 VDGDEWEDYIDQTD--TLVTDIELDAKQIIDRIAEMGIVGMGGATFPTHVKLSPPPGQSA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D   Y+++NA E EP    D  +MR +   ++ GC I   A  A    I +         
Sbjct: 158 D---YVIINAVECEPYLTSDDALMRVKAMEIMVGCAIIMKAANAPRTLIGIENNKPDAIR 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            ++ A +        G          I V      Y  G E  L+++L  K+      P 
Sbjct: 215 IMRDAAERAKEFLPEGQ--------SIAVVPLKKRYPQGGEKQLIDALIRKQVTSGALPI 266

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
                        V NV +   +          Y    +      ++ +++G  +  P  
Sbjct: 267 STG--------AIVQNVGTTFAI----------YEAVMKHKPLIERIITVTGRAIARPSN 308

Query: 254 VEESMSITFDELIEK-----------HCGGIRGGWDNLLAVIPG--GSSVPCLPAGQMRG 300
            +  +      LI+              GG   G   +   IP   GSS   +   +   
Sbjct: 309 FKARIGTPMQTLIDAAGGYAEEPGKIIGGGPMMGRALVSTDIPVAKGSSGLLILTAKEST 368

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH---ESCGQCTPCREGTGW 357
               +D ++       +   + ++ +  +   I++     +H     C +C  C      
Sbjct: 369 RPEMHDCIRCGKCV--SVCPMGLNPAFLMRDTIYKDWESTEHNYIADCIECGSCSYTCPA 426

Query: 358 MMRVMERLVKGIAQ 371
              +++ +  G   
Sbjct: 427 GRPLLDYIRVGKQT 440


>gi|256840545|ref|ZP_05546053.1| electron transport complex [Parabacteroides sp. D13]
 gi|256737817|gb|EEU51143.1| electron transport complex [Parabacteroides sp. D13]
          Length = 443

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 118/364 (32%), Gaps = 66/364 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           + + K        I++++ ASG+ G GGA F T +K    P   ++    +++NA E EP
Sbjct: 113 ETLVKECSLSSKEIVDKIAASGIVGLGGATFPTQVKLMPPPGNKAEI---VIINAVECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M  +   ++ G  I   A+  + A I +          LQ           L
Sbjct: 170 YLTSDHSLMLEKGEQILVGVTILMKAVNVNKAVIGIENNKPDAIAHLQK----------L 219

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
             N K      I +      Y  G E  L++++  ++ +       P + G       V 
Sbjct: 220 AVNYK-----GIEIMPLKVQYPQGGEKQLIDAVIRRQVK---SGALPISAG-----AVVQ 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   ++          +      ++ +I+G  V  P      M      LIE 
Sbjct: 267 NVGTAYAVYEAVQ----------KNKPLFERVVTITGKAVANPSNFLVRMGTPISCLIEA 316

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             G           +I GG  +    A       +            G++ V+++     
Sbjct: 317 AGGLPENTGK----IIGGGPMMG--KALISAEVPVCK----------GSSGVLLLTTEES 360

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
           + K I           C +C  C       +     +     Q  E+     ++  IE  
Sbjct: 361 VRKPIR---------DCIRCAKCVGVCPMGLNPTLLMNATEFQNWELAEKNYITDCIE-- 409

Query: 389 TICA 392
             C 
Sbjct: 410 --CG 411


>gi|150007170|ref|YP_001301913.1| electron transport complex protein RnfC [Parabacteroides distasonis
           ATCC 8503]
 gi|255015216|ref|ZP_05287342.1| electron transport complex, protein RnfC [Bacteroides sp. 2_1_7]
 gi|298377595|ref|ZP_06987547.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           sp. 3_1_19]
 gi|149935594|gb|ABR42291.1| electron transport complex, protein RnfC [Parabacteroides
           distasonis ATCC 8503]
 gi|298265614|gb|EFI07275.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           sp. 3_1_19]
          Length = 443

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 118/364 (32%), Gaps = 66/364 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           + + K        I++++ ASG+ G GGA F T +K    P   ++    +++NA E EP
Sbjct: 113 ETLVKECTLSSKEIVDKIAASGIVGLGGATFPTQVKLMPPPGNKAEI---VIINAVECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M  +   ++ G  I   A+  + A I +          LQ           L
Sbjct: 170 YLTSDHSLMLEKGEQILVGVTILMKAVNVNKAVIGIENNKPDAIAHLQK----------L 219

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
             N K      I +      Y  G E  L++++  ++ +       P + G       V 
Sbjct: 220 AVNYK-----GIEIMPLKVQYPQGGEKQLIDAVIRRQVK---SGALPISAG-----AVVQ 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   ++          +      ++ +I+G  V  P      M      LIE 
Sbjct: 267 NVGTAYAVYEAVQ----------KNKPLFERVVTITGKAVANPSNFLVRMGTPISCLIEA 316

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             G           +I GG  +    A       +            G++ V+++     
Sbjct: 317 AGGLPENTGK----IIGGGPMMG--KALISAEVPVCK----------GSSGVLLLTTEES 360

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
           + K I           C +C  C       +     +     Q  E+     ++  IE  
Sbjct: 361 VRKPIR---------DCIRCAKCVGVCPMGLNPTLLMNATEFQNWELAEKNYITDCIE-- 409

Query: 389 TICA 392
             C 
Sbjct: 410 --CG 411


>gi|77164681|ref|YP_343206.1| electron transport complex protein RnfC [Nitrosococcus oceani ATCC
           19707]
 gi|76882995|gb|ABA57676.1| Electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus oceani ATCC 19707]
          Length = 515

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 97/255 (38%), Gaps = 43/255 (16%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
               + N ++ +G+ G GGAGF T +K +  P+        L++N  E EP    D  +M
Sbjct: 125 DPSHLRNLIRQAGIVGLGGAGFPTFIKLNPGPQPK---VKTLILNGAECEPYITCDEALM 181

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     +I+G  I + A+ A+   I +  +                   +L + +  G  
Sbjct: 182 RERAEEIIQGAAIMAHALNAYHCLIGIEDDKPEA-------------CTVLAAAAAEG-- 226

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I V      Y  G E  L++ L G++         P ++G+       +NV + A V 
Sbjct: 227 --IEVVPIPTRYPAGGEKQLIKVLTGQEVPSNG---LPIDIGV-----VCHNVGTAAAVY 276

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             + RG    S          ++ +++G  V +P  +E  +      L+ +         
Sbjct: 277 RAIHRGEPLLS----------RIMTVAGKAVAHPGNLEVLLGTPIRHLLAQQGA----NI 322

Query: 278 DNLLAVIPGGSSVPC 292
            ++  +I GG  +  
Sbjct: 323 QSIDRLIMGGPMMGF 337


>gi|113461204|ref|YP_719273.1| electron transport complex protein RnfC [Haemophilus somnus 129PT]
 gi|112823247|gb|ABI25336.1| electron transport complex protein [Haemophilus somnus 129PT]
          Length = 659

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/403 (14%), Positives = 127/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++   L     R     ++  L   R+ +I+++  +G+ G GGA F T  K     +  +
Sbjct: 114 IEADGLEQWRKR---HLIEDFLTLSREQLIDKIYQAGIAGLGGAVFPTAAK----IRSAN 166

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           ++   L++N  E EP    D  +MR     +IEG  I  + +    A I +         
Sbjct: 167 NKVKLLIINGAECEPYITCDDRLMRDYSEEIIEGIRILRYILRPEKAVIAIEDNKPEAIA 226

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +L+ ++                   DI +      Y  G    L++ L G +        
Sbjct: 227 ALRQSLHGAN---------------DIDIRVIPTKYPSGAAKQLIQILTGVEV---ASGQ 268

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
             +++G+      ++NV +   +   +                  ++ +++G  +     
Sbjct: 269 RSSSMGI-----LMHNVGTAFAIKRAIIDDEPLI----------ERVVTLTGDKIAQKGN 313

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +      ++ +        +D+   V  GG  +  +            + L     
Sbjct: 314 FWVPLGTPISHVLTQVA----YQYDSRFPVFMGGPMMGFILPNLYAPVTKATNCLLAPDH 369

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
                                        +SC +C+ C +      M + +    +    
Sbjct: 370 F--------------------EYEPPATEQSCIRCSACSDACPVHLMPQQLYWFARAEDH 409

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
           K+  +  Y + + IE    C L    A+       LI+ FR  
Sbjct: 410 KKSEE--YALKECIE----CGLC---AYVCPSHIPLIQYFRQE 443


>gi|121997094|ref|YP_001001881.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588499|gb|ABM61079.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 506

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/332 (19%), Positives = 103/332 (31%), Gaps = 63/332 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
                +     I   V  +G+ G GGA F   +K              L++N  E EP  
Sbjct: 121 TAPARQIDPATIAARVGEAGIVGMGGAAFPAAVKLG-----AGQPVATLILNGGECEPYL 175

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +MR     +I+G  + + A+GA    I V         +L+ A     +  L G 
Sbjct: 176 TCDDRLMRERAAGIIDGAQLMARALGAERTAIGVEDNKPEAIHALRRA-----SDALGGP 230

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
           +          V      +  G E  L+ +L G++           ++G+      V+NV
Sbjct: 231 D----------VVPVPSLWPQGSEKHLIYTLTGREV---PAGARAGDIGV-----VVHNV 272

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
            +   V    R G        R    G       G V  P   E  + +    LIE+  G
Sbjct: 273 GTAYAVHRAARHGRPL---ISRPVTVG------GGAVAEPGNFEAPLGLPLQALIEQAGG 323

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                   L      G   P                  E     GT  VI +  +T+I +
Sbjct: 324 LREPPARVLAGGPMMGQVAPL-----------------EAAVAKGTNGVIALT-ATEIRE 365

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           A  R         C +C  C +     +   +
Sbjct: 366 AEGR--------PCIRCGRCVDACPMGLMPFD 389


>gi|289449574|ref|YP_003475793.1| putative electron transport complex protein RnfC [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184121|gb|ADC90546.1| putative electron transport complex protein RnfC [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 449

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 110/327 (33%), Gaps = 45/327 (13%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           RD  I  ++ SGL G GGAGF T +K         +    LV+NA E EP    D   M 
Sbjct: 127 RDEFIAAIQQSGLVGLGGAGFPTHVKLRAPKDHPFEI---LVINAAECEPYLTVDYRAML 183

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                L+ G    +  +      I            L  A+          S +    + 
Sbjct: 184 DNTDNLLAGIAAVTKYLDIPRVVIGTEDNKKDAVTKLLQALR---------SEAGDAINA 234

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D+ +      Y  G E  L+ +  G++         PANVG       V NV S+A V  
Sbjct: 235 DVEIMALPSRYPQGAEKTLIYAATGRRV---PAGGLPANVG-----CVVMNVTSVAFVGD 286

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            LR G    +          K  ++ G  + +P  +   +     +++E   G       
Sbjct: 287 YLRTGHPLVA----------KNITVDGDIIAHPQNIRAVIGTPIKDIVEFCGGLTGEPSK 336

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAI-MDYDGLKEMGSGLGTAAV-IVMDRSTDIIKAI-WR 335
            L+     G ++  L    ++    + +   + + +G  T  +          +  +  R
Sbjct: 337 ILMGGPMMGLAISSLDQPILKNNNGLLFFSERMVNNGPETDCIRCGRCSQHCPMNLLPKR 396

Query: 336 LSV---FYKHE--------SCGQCTPC 351
           +     F K+         +C +C  C
Sbjct: 397 IMDTVKFQKYAALSATGVMNCIECGSC 423


>gi|284047498|ref|YP_003397837.1| electron transport complex, RnfABCDGE type, C subunit
           [Acidaminococcus fermentans DSM 20731]
 gi|283951719|gb|ADB46522.1| electron transport complex, RnfABCDGE type, C subunit
           [Acidaminococcus fermentans DSM 20731]
          Length = 455

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 125/372 (33%), Gaps = 58/372 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   D I   ++  G+ G GGA F T +K+   PK        +++N  E EP    D  
Sbjct: 120 EITPDLIRQVLREKGIAGMGGATFPTAVKY-APPKEGHCPIDTILLNGIECEPFVTADHR 178

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            +      +I+G      A GA    I +        E +Q  V                
Sbjct: 179 TLLEYADEIIQGLKYFMLASGAAKGIIGIEDNKPDAIELMQKKVAG-------------- 224

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + +I V      Y  G E  L+ +  G+    R     PA+VG+      V+NV +   
Sbjct: 225 -EANIEVCVCKEKYPQGSEKHLIYAATGRTVPDRG---LPADVGV-----IVDNVGTAVA 275

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
               ++     Y           ++ +ISG  VN P      +   F + +EK  GG++ 
Sbjct: 276 ACRAVKNNIPLY----------ERVVTISGDGVNKPGNYIVRLGTLFSDAVEKAAGGLK- 324

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                      G     +  G M G  ++           G++ +++ +  +        
Sbjct: 325 -----------GDPGKIVAGGMMMGFAVNSLDYP---ITKGSSGLLIFNSKSP------- 363

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
            + + + + C  C  C +     +   E +     Q  +    +     IE  + CA   
Sbjct: 364 FAQYVEPDPCVHCARCVDACPMKLEPTEIVQAVKKQNWDDAERFFCHACIECGS-CAFVC 422

Query: 396 AAAWPIQGLIKN 407
            A  P+   I+ 
Sbjct: 423 PAHIPLVQYIRM 434


>gi|222099416|ref|YP_002533984.1| Electron transport complex protein [Thermotoga neapolitana DSM
           4359]
 gi|221571806|gb|ACM22618.1| Electron transport complex protein [Thermotoga neapolitana DSM
           4359]
          Length = 435

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 112/324 (34%), Gaps = 65/324 (20%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             ++ I++ +K +G+ G GGA F T +K S  P+   D    L++N  E EP    D  +
Sbjct: 117 MSKEEILDVIKKAGVVGLGGAMFPTHVKLSPPPEKKID---TLIINGAECEPVLTIDHRM 173

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M      +++G +I    +G   A + V    +     L+                  GY
Sbjct: 174 MLERAEDILQGILIMMKVLGVQKAVVGVENNKMDAYNHLKKVFK--------------GY 219

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
            VD  V      Y  G E  L+ ++  ++  PR     P +VG+      V NV +   V
Sbjct: 220 PVD--VALLKTKYPQGAEKQLIYAIT-RRKVPRGG--LPMDVGV-----VVQNVGTCVAV 269

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +  G               +  ++SG  V  P  +   +     +++E +CGGI   
Sbjct: 270 KEAVVDGKPLV----------ERGMTVSGDAVRDPKNLIVRIGTPVKDVLE-YCGGIDER 318

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            +    VI GG  +            +            GT+ +                
Sbjct: 319 TER---VILGGPMMGISITS--LDTPV----------MKGTSGITAFLPR---------- 353

Query: 337 SVFYKHESCGQCTPCREGTGWMMR 360
                 + C +C+ C +     ++
Sbjct: 354 -KPQSQKPCIRCSECVQVCPMNLQ 376


>gi|257462466|ref|ZP_05626878.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. D12]
 gi|317060123|ref|ZP_07924608.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12]
 gi|313685799|gb|EFS22634.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12]
          Length = 436

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 131/384 (34%), Gaps = 71/384 (18%)

Query: 29  WDNVDKILEKGRDWI---INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI       +   +  ++  G+ G GGA F T +K +       D    L++N  
Sbjct: 107 WAELSKIENWETAEVKELLAMIREKGIVGIGGASFPTHVKLNPPADTKID---TLLLNGA 163

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P ++IEG  I    +G   A I +         +++ A +    
Sbjct: 164 ECEPYLNSDNRLMLENPSSIIEGVKIIKKILGVSTAVIGIEENKPEAIANMKKAAE---- 219

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++++   +  P  K   P+ VG+    
Sbjct: 220 --------GTG----IEIAPLKTKYPQGGEKQLIKAVL-NREVPSGK--LPSAVGV---- 260

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   L  G               K+ ++SG  +  P  V  ++   F  
Sbjct: 261 -VVQNTGTAAAIYEGLVHGTPLV----------EKVVTVSGKAIATPKNVRIAIGTPFSY 309

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           L+   CG  R   D L   + GG  +                  +E     GT+ ++ + 
Sbjct: 310 LL-DACGVDREKVDKL---VMGGPMMGM------------AQFSEEAPVIKGTSGLLALT 353

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
           +           +  YK ++C  C  C       +   +  RL      +   +  Y + 
Sbjct: 354 KEE---------TNPYKPKACIGCGKCVSACPMSLEPVMFARLAAFQQWEGLQN--YHLM 402

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 403 DCIECGS-CAFICPANRPLTEAIK 425


>gi|254433139|ref|ZP_05046647.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Nitrosococcus oceani AFC27]
 gi|207089472|gb|EDZ66743.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Nitrosococcus oceani AFC27]
          Length = 491

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 97/255 (38%), Gaps = 43/255 (16%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
               + N ++ +G+ G GGAGF T +K +  P+        L++N  E EP    D  +M
Sbjct: 101 DPSHLRNLIRQAGIVGLGGAGFPTFIKLNPGPQPK---VKTLILNGAECEPYITCDEALM 157

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     +I+G  I + A+ A+   I +  +                   +L + +  G  
Sbjct: 158 RERAEEIIQGAAIMAHALNAYHCLIGIEDDKPEA-------------CTVLAAAAAEG-- 202

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I V      Y  G E  L++ L G++         P ++G+       +NV + A V 
Sbjct: 203 --IEVVPIPTRYPAGGEKQLIKVLTGQEVPSNG---LPIDIGV-----VCHNVGTAAAVY 252

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             + RG    S          ++ +++G  V +P  +E  +      L+ +         
Sbjct: 253 RAIHRGEPLLS----------RIMTVAGKAVAHPGNLEVLLGTPIRHLLAQQGA----NI 298

Query: 278 DNLLAVIPGGSSVPC 292
            ++  +I GG  +  
Sbjct: 299 QSIDRLIMGGPMMGF 313


>gi|154495029|ref|ZP_02034034.1| hypothetical protein PARMER_04075 [Parabacteroides merdae ATCC
           43184]
 gi|154085579|gb|EDN84624.1| hypothetical protein PARMER_04075 [Parabacteroides merdae ATCC
           43184]
          Length = 443

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 114/360 (31%), Gaps = 61/360 (16%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D + K        I++++ A+G+ G GGA F T +K    P   ++    +++NA E EP
Sbjct: 113 DALVKDCTLSSKEIVDKIAAAGIVGLGGATFPTQVKLMPPPGSKAEI---IIINAVECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M  +   ++ G  +   A+  + A I +          L   +   Y     
Sbjct: 170 YLTSDHSLMMEKGEQILVGVTLLMKAVNVNKAVIGIENNKPDAIAHLTK-LAAAYPG--- 225

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                      I +      Y  G E  L++++  ++ +       P + G       V 
Sbjct: 226 -----------IEIMPLKVQYPQGGEKQLIDAVIRRQVK---SGALPISAG-----AVVQ 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   ++          +      ++ +++G  V  P      M    + LIE 
Sbjct: 267 NVGTAYAVYEAVQ----------KNKPLFERVVTVTGKAVANPSNFLVRMGTPINTLIEA 316

Query: 269 HCGGIRGGWDNLLA--------------VIPGGSSVPCLPAG-----QMRGAIMDYDGLK 309
             G        +                V  G S V  L         M+  I     + 
Sbjct: 317 AGGIPENTGKIIGGGPMMGKALVSAEVPVTKGSSGVLLLTKEESVRKPMQDCIRCAKCVN 376

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
               GL  A ++      D  KA            C +C  C         +++++  G 
Sbjct: 377 VCPMGLNPAFLMKFTVYKDWEKAEANYIQ-----DCIECGSCSYTCPANRPLLDQIRLGK 431


>gi|218262923|ref|ZP_03477230.1| hypothetical protein PRABACTJOHN_02910 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223065|gb|EEC95715.1| hypothetical protein PRABACTJOHN_02910 [Parabacteroides johnsonii
           DSM 18315]
          Length = 443

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 114/360 (31%), Gaps = 61/360 (16%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D + K        I++++ A+G+ G GGA F T +K    P   ++    +++NA E EP
Sbjct: 113 DALVKDCTLSSKEIVDKIAAAGIVGLGGATFPTQVKLMPPPGSKAEI---IIINAVECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M  +   ++ G  +   A+  + A I +          L   +   Y     
Sbjct: 170 YLTSDHSLMMEKGEQILVGVTLLMKAVNVNKAIIGIENNKPDAIAHLTK-LAAAYPG--- 225

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                      I +      Y  G E  L++++  ++ +       P + G       V 
Sbjct: 226 -----------IEIMPLKVQYPQGGEKQLIDAVIRRQVK---SGALPISAG-----AVVQ 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   ++          +      ++ +++G  V  P      M    + LIE 
Sbjct: 267 NVGTAYAVYEAVQ----------KNKPLFERVVTVTGKAVANPSNFLVRMGTPINTLIEA 316

Query: 269 HCGGIRGGWDNLLA--------------VIPGGSSVPCLPAG-----QMRGAIMDYDGLK 309
             G        +                V  G S V  L         M+  I     + 
Sbjct: 317 AGGIPENTGKIIGGGPMMGKALVSAEVPVTKGSSGVLLLTKEESVRKPMQDCIRCAKCVN 376

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGI 369
               GL  A ++      D  KA            C +C  C         +++++  G 
Sbjct: 377 VCPMGLNPAFLMKFTVYKDWEKAEANYIQ-----DCIECGSCSYTCPANRPLLDQIRLGK 431


>gi|332534028|ref|ZP_08409877.1| electron transport complex protein RnfC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036465|gb|EGI72933.1| electron transport complex protein RnfC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 606

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 120/349 (34%), Gaps = 71/349 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   D +IN +  +G+ G GGAGF T     ++         +L+VNA E EP    D  
Sbjct: 130 ELSHDELINIIHQAGISGMGGAGFPT-----YVKADTKQPIEFLIVNAVECEPYITADDV 184

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I    +      + +         +++ A +               
Sbjct: 185 LMREHAKEVIQGIEIMQQLLNPTLCIVGIEDNKPEAIAAMKQAAE--------------- 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           ++  II+      Y  G E  L++ L   +  P +    PA++G+      V+N  ++  
Sbjct: 230 HNSKIIIQTVPTIYPSGGEKQLIK-LLTNREVPSIG--IPADIGI-----LVHNTGTLFA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +  G               ++ +++G+ ++ P  V   +      L++        
Sbjct: 282 VQQAVYEG----------KPLIERIVTVTGNTIHKPGNVWALLGTEIKHLLD----CQGF 327

Query: 276 GWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                 +V+ GG  +   LP  ++                     ++             
Sbjct: 328 SPVPQQSVVMGGPMMGFTLPTVRI--------------------GIVKTTNCILAPDH-K 366

Query: 335 RLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEV 381
            L+     ++C +C+ C +      + + ++   K     +E D L E 
Sbjct: 367 ELAEPGPEKACIRCSACADACPASLLPQQLQWFAK----SKEYDKLQEH 411


>gi|156934161|ref|YP_001438077.1| electron transport complex protein RnfC [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166225091|sp|A7MMK9|RNFC_ENTS8 RecName: Full=Electron transport complex protein rnfC
 gi|156532415|gb|ABU77241.1| hypothetical protein ESA_01988 [Cronobacter sakazakii ATCC BAA-894]
          Length = 776

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 129/403 (32%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        ++R  W +      + R+ +I  +   G+ G GGAGF TG K     +   
Sbjct: 110 IDADGEDRWIARDGWSDYQC---RSREALIERIHQFGVAGLGGAGFPTGTKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     +I+G  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQIIDGVRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            ++A +                 +  I +      Y  G    L + L GK+        
Sbjct: 223 MMRAVLHG---------------EHKIRLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAFAVKRAIIDGEPLT----------ERVVTLTGEAVGRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+E           +   VI GG  +                      +
Sbjct: 310 VWARIGTPVRHLLEHAG----FIPTSEQLVIMGGPLMGF--------------------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
             G    +V   +  +  +   +    + + C +C+ C +      + + +     G   
Sbjct: 346 LPGLDVPVVKITNCLLAPSATEMGAPQEEQHCIRCSACADACPADLLPQQLYWFSVGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A A+       L++ FR  
Sbjct: 406 --DKATAHNLADCIE----CG---ACAYVCPSNIPLVQYFRQE 439


>gi|295096019|emb|CBK85109.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 673

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 128/398 (32%), Gaps = 81/398 (20%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
              + R  W +        R+ +I  +   G+ G GGAGF TG K         D+   L
Sbjct: 116 DRWIDRDGWSDYR---SHSREALIERIHQFGVAGLGGAGFPTGAKL----HGGGDKIETL 168

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           ++NA E EP    D  +M+     ++EG  I +  +      I +     +    L+A +
Sbjct: 169 IINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVL 228

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
            +                 DI +      Y  G    L + L GK+          +++G
Sbjct: 229 AD---------------SHDIALRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIG 270

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMS 259
           +      + NV +   V   +  G               ++ +++G  V+ P  V   + 
Sbjct: 271 V-----LMQNVGTAYAVKRAVIDGEPLT----------ERVVTLTGESVSRPGNVWARLG 315

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTA 318
                L+E+              VI GG  +   LP   +    +    L    + +G  
Sbjct: 316 TPVRHLLEQAGFCPGSD----QLVIMGGPLMGFTLPWLDVPVVKITNCLLAPSPTEMG-- 369

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREID 376
                                 + + C +C+ C +      + + +    KG     +  
Sbjct: 370 -------------------ETQEEKGCIRCSACADACPADLLPQQLYWYSKGQLH--DKA 408

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             + ++  IE    C    A AW       L++ FR  
Sbjct: 409 QAHNLADCIE----CG---ACAWVCPSNIPLVQYFRQE 439


>gi|254448496|ref|ZP_05061956.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma
           proteobacterium HTCC5015]
 gi|198261879|gb|EDY86164.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma
           proteobacterium HTCC5015]
          Length = 792

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 107/320 (33%), Gaps = 57/320 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     + N ++ +G+ G GGA F + +K   +    S + H LV+N  E EP    D+ 
Sbjct: 109 QLDPISLRNRIREAGIVGLGGAAFPSAVK---LNPGPSRKIHTLVINGAECEPYITCDQT 165

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M      +++G  IA  A+G    +I +        E L  A+ +C             
Sbjct: 166 LMSERADQVVQGIQIAMHALGVERCWIAIEDSMPTAHEGLSQAIAQC------------- 212

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I +      Y  G E  LL+ L G++         P+ +G+       +N  +I  
Sbjct: 213 GDTKIEIKVVPTIYPTGGEKQLLKVLTGQEVPSNG---LPSEIGV-----VCHNPGTIVA 264

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   +  G    S       +G         +  P  +E         L+ +  G     
Sbjct: 265 MYRAIAFGEPLISRIVTITGQG---------IASPRNIEALFGTPIAHLVAEAGG----Y 311

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              +  +I GG          M G  +  D L            IV   +  +      +
Sbjct: 312 QKGVERLIMGGP---------MMGFALHTDELP-----------IVKATNCILAGQAGEI 351

Query: 337 SVFYKHESCGQCTPCREGTG 356
           +     + C +C  C +   
Sbjct: 352 ADPGHADPCIRCGACADACP 371


>gi|237808455|ref|YP_002892895.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
 gi|237500716|gb|ACQ93309.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Tolumonas auensis DSM 9187]
          Length = 459

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 94/284 (33%), Gaps = 62/284 (21%)

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           +VNA E EP    D+ +M      LI G      A GA    I ++ ++     +L+   
Sbjct: 56  LVNAAECEPMLKVDQQLMTQHASQLIRGLRYGMAATGAREGIIALKAKYQPAIAALE--- 112

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                  LL  N        + +H     Y  G+E   +    G++  P      P ++G
Sbjct: 113 ------PLLPEN--------VRIHILPDVYPAGDEVITIWQATGRRVPP---AALPISIG 155

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           +      VNNV+++  +   L            E     +  +I+G V  P TV   + +
Sbjct: 156 V-----VVNNVQTLLNLAAALE----------TETPVTHRTLTINGAVRNPMTVTVPLGV 200

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
           T  +++    G          A I GG  +  L       A +             T  +
Sbjct: 201 TLRDVLTLAGGATIPDP----AFINGGPMMGKLVTD--LDAPVTKT----------TGGL 244

Query: 321 IVMDRSTDII-------KAIWRLSVFYKHESCGQCTPCREGTGW 357
           +V+     II        AI  +        C QC  C E    
Sbjct: 245 LVLPEDHLIIQRRKRSDDAILNM----AKTVCEQCGLCTELCPR 284


>gi|302391321|ref|YP_003827141.1| electron transport complex, RnfABCDGE type, C subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302203398|gb|ADL12076.1| electron transport complex, RnfABCDGE type, C subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 442

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 112/350 (32%), Gaps = 67/350 (19%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILE-------KGRDWIINEVKASGLRGRGGAGFSTGMKW 66
           G   K+L+ +++    D + + ++            + + V+ +G+ G GGA F + +K 
Sbjct: 89  GDGEKTLAVTIASDGQDTLHESVKPKGDLDTLSPQELRDIVQEAGIVGLGGATFPSHVKV 148

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
           S       D    +++N  E EP    D   M      ++ G         A   +I + 
Sbjct: 149 SIPEDKNVD---TVILNGAECEPYLTVDHRTMVEMSKEVVYGLKAIMKMSDAKQGYIGIE 205

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
                  E ++  V++                 +I V      Y  G E  L+++  G++
Sbjct: 206 VNKPDAIEEMKKTVEDEE---------------NIEVISLEVKYPQGAERQLIDACIGRE 250

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
                    P + G+      VNNV +   +   ++ G             G        
Sbjct: 251 V---PSGGLPLDAGV-----VVNNVGTAVAMTDAIKNGMPLVQRTVTVTGSG-------- 294

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            +  P  +   +    ++LIE+  G        +  VI GG  +    A           
Sbjct: 295 -IQNPQNLVFRLGTKVEDLIEQCGG----FKGEVGKVIMGGPMMGA--AQHSTDIP---- 343

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                 +  GT+ +++                 Y+  +C +C  C +   
Sbjct: 344 ------ATKGTSGILIFQEDE---------VEEYESSNCIRCARCVDVCP 378


>gi|255524099|ref|ZP_05391060.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|296188445|ref|ZP_06856833.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255512236|gb|EET88515.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|296046709|gb|EFG86155.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 442

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 125/333 (37%), Gaps = 54/333 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +        +  Y +VN  E EP    D+ +MR++   +++       AIGA 
Sbjct: 20  FPTHIKLNC-------KVEYFIVNGLECEPLLQSDKYMMRNKSDEIVQAVEEIGKAIGAK 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ E+  E ++L+ ++++              ++  I +H     Y  G+E  L+
Sbjct: 73  HLVIGLKEEYRDEIQALKNSIEK--------------FNSKIKLHLSRAFYPAGDEQVLV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P NVG       V+N  +I  +   ++  A  Y           
Sbjct: 119 YEVTGRTIPP---AGIPLNVG-----AVVSNSGTILNIFEAMQDKAVTY----------- 159

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  ++ G V  P  V+  +     E++EK  G +   +    A+I GG          M 
Sbjct: 160 KFVTVIGEVAKPSIVKVPIGTKVKEVLEKCGGVLTKDY----AIIMGGP---------MM 206

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
           G  M  D ++         A+IV+     + +         K+++   C  C   T    
Sbjct: 207 GKRMSKDQIEGRVITKTDGAIIVLPEDHYLAQRERMTIEHIKNQAKSACIQCHFCTDMCP 266

Query: 360 R-VMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           R ++   +      R I L  +  + ++   IC
Sbjct: 267 RNLIGHPINPHKIMRSIALKEQNEEVLKQAMIC 299


>gi|291278902|ref|YP_003495737.1| electron transport complex protein RnfC [Deferribacter
           desulfuricans SSM1]
 gi|290753604|dbj|BAI79981.1| electron transport complex protein RnfC [Deferribacter
           desulfuricans SSM1]
          Length = 435

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 114/335 (34%), Gaps = 66/335 (19%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D     V ++G+ G GGA F + +K S   K       YL++N  E EP    D  +M  
Sbjct: 117 DKFQENVLSAGIVGLGGATFPSHVKLSPPRK-----IDYLIINGAECEPYLTCDHRLMVE 171

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           +   +I+G  I    +      I +        ES +                +  Y+ +
Sbjct: 172 KTEEIIKGAKIIQKELEIDNLVIGIEKNKPDAIESFRK--------------FENKYEFE 217

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           +I       Y  G E  L+++    +  P  K   P  VG+      V+NV +   +   
Sbjct: 218 LI--PLEVKYPQGGEKQLIKA-TVNRVVPEGK--LPLEVGV-----IVHNVGTALSI--- 264

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
                  Y     +     ++ +++G V  P  +   + +   +LIE  CGG  G    +
Sbjct: 265 -------YEALEFKKPLIERVVTVTGAVKEPKNLLVPIGVPVSKLIE-FCGGPLGD---I 313

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
             V+ GG  +       +                 GT+ +I+   S         +    
Sbjct: 314 KKVVMGGPMMGF----SLFDLNTPV--------MKGTSGIILYRDSDLP---NLNM---- 354

Query: 341 KHESCGQCTPCREGTGWMM--RVMERLVKGIAQKR 373
              +C +C  C E     +   +ME+       +R
Sbjct: 355 --HNCIRCGRCVEACPMGLVPAIMEQFALNEMYER 387


>gi|282857220|ref|ZP_06266464.1| electron transport complex protein RnfC [Pyramidobacter piscolens
           W5455]
 gi|282585006|gb|EFB90330.1| electron transport complex protein RnfC [Pyramidobacter piscolens
           W5455]
          Length = 447

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 122/354 (34%), Gaps = 62/354 (17%)

Query: 23  SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
                 W  +           +  ++ +G+ G GGA F   +K++  P+   D+  + +V
Sbjct: 105 YEKDERWAPLPDYENCDPKEYLKRIREAGIVGFGGATFPAAVKFAPPPQ---DKIKWFIV 161

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           N  E EP    D  +M      +++G  +           I V                 
Sbjct: 162 NGAECEPYLNCDFRLMMESTDEIVKGTALLLRLFPEAEGVIAVENNKPEAI--------- 212

Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
              + L GS ++LG   ++ V      Y  G E  L+E+L G++         PA+VG  
Sbjct: 213 ---AALSGSVARLGVQ-NVRVQPLTVKYPQGSEKMLIEALTGQEYVVTA---LPADVG-- 263

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSIT 261
                + NV ++             +           ++ +++G  +  P  V   +  +
Sbjct: 264 ---CIIANVRTVQ----------QCWRAIALGEPSTERVVTVTGDAIAEPKNVCIPLGTS 310

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
             EL+   CGG +      + V+ GG  +            M    L ++ +  GT+ V+
Sbjct: 311 IRELV-DFCGGFKEAP---VKVLAGGPMMG-----------MSMRSL-DVPAVKGTSGVL 354

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM--RVMERLVKGIAQKR 373
            +   + +++            +C  C  C E     +    ++ LV G    R
Sbjct: 355 ALTARSTMLRRA---------TACLHCGRCVEACPMGLVPSALDTLVLGKEYDR 399


>gi|56476887|ref|YP_158476.1| electron transport complex protein rnfC (nitrogen fixation protein
           rnfC) [Aromatoleum aromaticum EbN1]
 gi|56312930|emb|CAI07575.1| Electron transport complex protein rnfC (Nitrogen fixation protein
           rnfC) [Aromatoleum aromaticum EbN1]
          Length = 508

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 115/342 (33%), Gaps = 62/342 (18%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
                  I   V A+G+ G GGA F + +K S   +   D    L++N  E EP    D 
Sbjct: 126 FALDPAEIGRRVSAAGIVGLGGAAFPSAVKLSGGREANVD---LLIINGGECEPFLSCDD 182

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MR      I+G  I   A GA  A I +                           +  
Sbjct: 183 RLMRERAADAIDGVAIMLHATGAREARIGIEDNKPEAIA---------------AMRAAA 227

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
                I V      Y  G E  L+ +L G +         PA+VG+      V+NV +  
Sbjct: 228 AGHPKIRVEPVPTRYPMGSEKHLVLALTGLEVPANG---RPADVGV-----VVHNVATAV 279

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +R G              ++L +++G  V  P  VE  +    DE++E  CGG+R
Sbjct: 280 AVRDAVRFG----------RPLVSRLVTVNGACVREPGNVEVLIGTLADEVVE-FCGGLR 328

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                   ++ GG               M    L+ +    GT  ++V+D     ++A  
Sbjct: 329 ADRGAPARLLLGGPMTG-----------MQVPSLR-VPVIKGTGGILVLDGDEVGLRA-- 374

Query: 335 RLSVFYKHESCGQCTPCREGTGWM---MRVMERLVKGIAQKR 373
                     C +C+ C          + +  R+  G     
Sbjct: 375 -------PGPCIRCSTCVRACPVGLLPLEIARRIGAGDLDAA 409


>gi|310780118|ref|YP_003968450.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309749441|gb|ADO84102.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 447

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 125/334 (37%), Gaps = 54/334 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K+S       D+  YL+VN  E EP    D+ +MR +   +I+        I A 
Sbjct: 20  FPTHIKFSV------DKVDYLLVNGAECEPLLQIDKYLMREKASEIIKILEQLGDRIQAK 73

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++G++  E   L+ A+                 +  + +      Y  G+E  ++
Sbjct: 74  EIHIALKGKYKSEITELENAIKNL--------------NSRVKIFKMGTYYPAGDEQQIV 119

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G +  P  +   P +VG+      V NV ++  +          Y     +     
Sbjct: 120 FEVTG-RTVP--EAGIPLDVGV-----IVTNVGTLVNI----------YEAVDSDKPVVD 161

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  SI G V  P  ++  + +TF++ IE   G     +     +I GG          M 
Sbjct: 162 KCLSIHGEVKKPLIIKTPIGMTFEKCIEAAGGATIDNYK----IIVGGP---------MM 208

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
           G ++  + LK+      T A+IV+     +I    +      +E+   C  CR  T    
Sbjct: 209 GKVIVKESLKKEVVTKTTGALIVVPEDHYMIYRNGKTVKHIVNEAKSACIQCRMCTDLCP 268

Query: 360 RVM--ERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           R +   +L       R + +L   S+ ++   +C
Sbjct: 269 RYLIGHKLRP-HRIMRNVSMLENDSEILKEAMLC 301


>gi|254509395|ref|ZP_05121478.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio
           parahaemolyticus 16]
 gi|219547669|gb|EED24711.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio
           parahaemolyticus 16]
          Length = 840

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 111/347 (31%), Gaps = 67/347 (19%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
              +        + R     V+   +   D +I  ++ +G+ G GGAGF T  K     +
Sbjct: 108 CIVIHPDGEETWIDR---ACVEDYRQSSPDELIEIIRQAGISGMGGAGFPTAKK----IQ 160

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
               R   L+VNA E EP    D  +M+     +I+G  I    +      I +      
Sbjct: 161 SGLARTEILIVNAAECEPYITADDMLMQEHADEIIQGIEIVEHILKPKLTIIGIEDNKPN 220

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              +LQ A                  + DI++      Y  G E  L++ L  K+     
Sbjct: 221 AVAALQHA----------------ALNKDIVIRVIPTKYPSGGEKQLIKILTNKEVPANG 264

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNY 250
               PA++GL      V NV S+  +   +  G               ++ +++G     
Sbjct: 265 ---IPADIGL-----LVQNVGSLQAIKRAVCDGEPLI----------ERIVTLTGDTFKQ 306

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P  V   +      L+++           L  +I GG  +                    
Sbjct: 307 PRNVWARIGTPVQALLDEFGY---KADKKLPRLIMGGPMMGF------------------ 345

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
               L  A V +   +  I+    +      +E +C +C  C E   
Sbjct: 346 ---TLPHANVPITKTANCILAPTRKEISPDHYEMACIRCGQCAEVCP 389


>gi|290967901|ref|ZP_06559451.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290782040|gb|EFD94618.1| electron transport complex, RnfABCDGE type, C subunit [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 446

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 113/324 (34%), Gaps = 66/324 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD-R 95
           +  ++ I++ VKA G+ G GGA F   +K +    V S      +VN  E EP    D R
Sbjct: 119 KMSKEEILDAVKACGIVGCGGATFPVHVKLTPNKPVDS-----FIVNGAECEPYLTCDFR 173

Query: 96  DIMRHEP-HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
            ++  EP    + G  I    +G    +I +         +L  A  +            
Sbjct: 174 SMVEAEPTRKFVTGVQICMKVLGVKKGYIGIEDNKPEAIANLTEAFRQV----------- 222

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                ++ V      Y  G E  ++E+  G+  +P      P NVG       V+NV ++
Sbjct: 223 ----PEVTVVTCKTKYPQGAEKMMIEACTGRLVEP---GGLPMNVG-----CVVSNVGTV 270

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGI 273
             +   +  G               ++ +++G  +  P  +   +  T++E I+ HCGG 
Sbjct: 271 IAITDAVCYGIPLI----------ERVTTVTGDCIAEPKNLRLRIGTTYEEAIQ-HCGGF 319

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
               D    VI GG  +    A       +            G + ++ +      +   
Sbjct: 320 SQQPDR---VIAGGPMMGF--AQYQLDIPITK----------GASGILALSSVKCDVG-- 362

Query: 334 WRLSVFYKHESCGQCTPCREGTGW 357
                  + E C +C  C +    
Sbjct: 363 -------EEEPCIRCGRCVDACPM 379


>gi|167771614|ref|ZP_02443667.1| hypothetical protein ANACOL_02986 [Anaerotruncus colihominis DSM
           17241]
 gi|167666254|gb|EDS10384.1| hypothetical protein ANACOL_02986 [Anaerotruncus colihominis DSM
           17241]
          Length = 437

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 69/343 (20%), Positives = 114/343 (33%), Gaps = 64/343 (18%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
               +  +K SGL G GGAGF T +K +       D    LVVNA E EP    D   + 
Sbjct: 119 HPEFVQAIKESGLVGLGGAGFPTHIKLNPKNLSEVD---TLVVNAAECEPYITSDYRTII 175

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
             P  +++G       +G     I +     +  E L+           L  +     D 
Sbjct: 176 ERPQDVLDGIEAIKKYVGITQVKIAIEDNKPQAIEMLRR----------LTKD-----DS 220

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I V      Y  G E        G+  +   +   PA+ G+      V N+ + A +  
Sbjct: 221 SIEVCSLHAIYPKGAEKVAAYETTGRVIK---EGMLPADAGI-----IVENITTTAFIGQ 272

Query: 220 ILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            LR G              TK+ ++  G +  P  V   +   F ++I   CGG +    
Sbjct: 273 YLRTGMPLI----------TKMLTVDGGAIAEPKNVIAPIGAHFSDVI-AFCGGYK---R 318

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               +I GG  +  L                         A++  D S  +++       
Sbjct: 319 PAKKLIMGGPMMGTLVFD------------AAYPVLKNNNALLAFDESQTVVE------- 359

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
                 C +C  C +       +M R ++   +   I +L ++
Sbjct: 360 --PEHPCIRCGRCMQNCP--YHLMPRQIEKAYESENIAMLQKL 398


>gi|260589727|ref|ZP_05855640.1| Na(+)-translocating NADH-quinone reductase, A subunit [Blautia
           hansenii DSM 20583]
 gi|260539967|gb|EEX20536.1| Na(+)-translocating NADH-quinone reductase, A subunit [Blautia
           hansenii DSM 20583]
          Length = 449

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 113/319 (35%), Gaps = 62/319 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            ++ II  ++  GL G GGAGF T  K+    K        L++NA E EP    D  +M
Sbjct: 126 TKEEIIAGIRDGGLTGMGGAGFPTHKKYETDKK-----IDALLINAAECEPFLTCDYRLM 180

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
               + +  G  +   A GA  A++ +        + L   ++                 
Sbjct: 181 LEYSYAVANGIRLLLKASGAPKAYLCMEDNKPEAAKVLGKILENTK-------------- 226

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            DI V      Y  G E  L++++ G++         PA  G       V+NV +     
Sbjct: 227 -DIEVKVLPTQYPQGGERQLIQAVLGREV---PMGGLPAEAG-----AIVSNVGTAKATA 277

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +L                  ++ +++G V  P      +  +  EL+E  CGG+    +
Sbjct: 278 DMLLGKTPLIR----------RIVTVTGCVKNPGNYLVPIGTSAKELVE-LCGGVTVKNN 326

Query: 279 NLLAVIPGGS-SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               VI GG  + PC+ +     + + Y           T+ ++V+  S           
Sbjct: 327 R---VIAGGPMTGPCVASDWNGESELFYVT-------KNTSGILVLPDSQ---------- 366

Query: 338 VFYKHESCGQCTPCREGTG 356
             Y+ + C +C  C     
Sbjct: 367 --YEEQPCIRCAGCESVCP 383


>gi|323498079|ref|ZP_08103084.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM
           21326]
 gi|323316859|gb|EGA69865.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM
           21326]
          Length = 617

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 114/348 (32%), Gaps = 67/348 (19%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
               +Q         R  + +         D +I  ++ +G+ G GGAGF T  K     
Sbjct: 107 TCIVIQPDGEDRWCERQQYQDFS---SLSPDELIEIIRQAGISGMGGAGFPTAKK----I 159

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           +    R   L+VNA E EP    D  +M+   + +I G  I    +      I +     
Sbjct: 160 QSGLARTDILIVNAAECEPYITADDMLMQEHANEIITGIEIVEHILKPKLTIIGIEDNKP 219

Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
              ++LQAA D                D DII+      Y  G E  L++ L  K+    
Sbjct: 220 DAVKALQAAAD----------------DKDIIIRVIPTKYPSGGEKQLIKILTNKEVPAN 263

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VN 249
                PA++GL      V NV S+  +   +  G               ++ +++G    
Sbjct: 264 G---IPADIGL-----MVQNVGSLQAIKRAVCDGEPLV----------ERIVTLTGDTFK 305

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P  V   +      L+++           L  +I GG  +                   
Sbjct: 306 QPRNVWAMIGTPVQSLLDEFGY---KADKKLERLIMGGPMMGF----------------- 345

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
                L  A V +   +  I+    +     ++E +C +C  C E   
Sbjct: 346 ----TLPHANVPITKTANCILAPTRKEISPNQYEMACIRCGQCAEACP 389


>gi|210615656|ref|ZP_03290702.1| hypothetical protein CLONEX_02920 [Clostridium nexile DSM 1787]
 gi|210150199|gb|EEA81208.1| hypothetical protein CLONEX_02920 [Clostridium nexile DSM 1787]
          Length = 446

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 107/336 (31%), Gaps = 67/336 (19%)

Query: 27  GHWDNVD----KIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           G +  V+    K L E  ++ I+N +  +G+ G GGAGF T +K S       ++  Y++
Sbjct: 110 GEYQEVEYTPSKPLDELTKEEILNLIGEAGIVGMGGAGFPTKVKLS---PKEPEKIEYVI 166

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
            N  E EP    D   M   P  L+ G  +             V          L+    
Sbjct: 167 ANCAECEPYITADYRRMLENPEELVSGMKVVLKLFDNAKGIFGVEDNKPDCIAKLKE--- 223

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
                  L  +        + V      Y  G E  L+ +  G+     +    PA+ G 
Sbjct: 224 -------LTKDEP-----RMEVLALKTKYPQGAERQLIFATTGRAINSSM---LPADAG- 267

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSI 260
                 V+NVE++  +   +            E     ++ ++SG  V  P   +     
Sbjct: 268 ----CVVDNVETLIGIHYAVID----------ERPVMERIVTVSGDGVKAPGNFKVLFGT 313

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
              EL+E   G +         VI GG  +    A       +              +++
Sbjct: 314 NQRELVEAAGGFLGEPEK----VISGGPMMGF--AMFTLDTPITKTS----------SSI 357

Query: 321 IVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           + + +     +         +  +C  C  C E   
Sbjct: 358 LCLTKD----EVAAN-----EPSACINCGRCVEVCP 384


>gi|311694180|gb|ADP97053.1| electron transport complex, RnfABCDGE type, C subunit [marine
           bacterium HP15]
          Length = 580

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 107/332 (32%), Gaps = 70/332 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            + ++++      D ++  ++ +G+ G GGAGF T +K              L++N  E 
Sbjct: 89  DYRSLER------DEVLQIIRDAGISGMGGAGFPTNIKLRPPRDRK---VSTLILNGAEC 139

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D   MR +   ++ G  I ++ +      I +         +L+ A +      
Sbjct: 140 EPYITADDMTMREKADEVVAGLKIMAWILRPERCVIGIEDNKPEAIAALRKATEGTQT-- 197

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                          +      Y  G E  L++ L G +         PA++G+      
Sbjct: 198 --------------EIAVVPTKYPSGGEKQLIQILTGMEV---PSGGIPADIGV-----M 235

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELI 266
             N+ +   V   +  G    S          ++ +I+G  V  P   E  +      L+
Sbjct: 236 CQNIGTAVAVANAVLEGTPLIS----------RIVTITGEAVREPGNFETLIGTPIKHLL 285

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
               G      D +  ++ GG  +                        L T AV V+  +
Sbjct: 286 ----GQAGVNQDAVSRLVLGGPMMGY---------------------TLTTEAVPVIKTT 320

Query: 327 TDIIKA-IWRLSVFYKHESCGQCTPCREGTGW 357
             +I A    L      + C +C  C E    
Sbjct: 321 NCVIAATAAELPAPPPEQPCIRCGQCAEACPM 352


>gi|326796152|ref|YP_004313972.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas
           mediterranea MMB-1]
 gi|326546916|gb|ADZ92136.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas
           mediterranea MMB-1]
          Length = 1029

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 99/317 (31%), Gaps = 62/317 (19%)

Query: 42  WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
            ++  +   G+ G GGAGF T +K     K       + ++NA E EP    D  ++R  
Sbjct: 128 DVLAYLSEMGIVGMGGAGFPTQVKLQGAHKHP---LSHFIINAAECEPYITADDMLIRER 184

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
              LI G  I    + A    I +         +L+  + E               +  I
Sbjct: 185 TLELILGIEILQHLVEAEQVVIGIEDNKPTAIAALKQVIRER--------------NSTI 230

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V      Y  G E  L++ L  K+         PA++G+        NV +   +   +
Sbjct: 231 QVAVVPTKYPSGGEKQLIKLLTNKEV---PSGRHPADIGV-----LCQNVGTCTAIYDAI 282

Query: 222 RRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
             G              T+  +++G     P  VE  +      L+E            L
Sbjct: 283 YHG----------KPLITRYTTLTGDAFEAPQNVEVLLGTPVSHLLEYAG----TIDKKL 328

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR-LSVF 339
             ++ GG  +                        L    V V+  +  I+ A  + L   
Sbjct: 329 NRLVMGGPMMGF---------------------TLNADTVPVVKTTNCILAASKKELPEP 367

Query: 340 YKHESCGQCTPCREGTG 356
              + C +C  C +   
Sbjct: 368 APEQPCIRCGMCEQACP 384


>gi|291519330|emb|CBK74551.1| electron transport complex, RnfABCDGE type, C subunit/electron
           transport complex, RnfABCDGE type, D subunit
           [Butyrivibrio fibrisolvens 16/4]
          Length = 760

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 132/387 (34%), Gaps = 66/387 (17%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            ++          + II +++ +G+ G GGAGF T +K S       +   +++ N  E 
Sbjct: 109 GFEACADYTNLSNEEIIKKIQEAGIVGMGGAGFPTHVKLS---PKNPEAIEFIIANCAEC 165

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D   M  EP  LIEG  I           + +    +   ++L     +     
Sbjct: 166 EPYLTSDYRSMVEEPEKLIEGMKIILQLFPKAKGLLGIEDNKMDVIQNLTKLCAKER--- 222

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                        I V      Y  G E  L+++  G++   ++    PA+ G       
Sbjct: 223 ------------RIEVVPLVTKYPQGGERQLIKACTGREINSKM---LPADAG-----CI 262

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V+NV +I  V T +  G               ++F+I+G  +  P     ++  ++ E++
Sbjct: 263 VDNVATINAVYTAVVEGKPVMD----------RIFTITGDAIMEPRNFRINIGTSYKEIL 312

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPC----------LPAGQMRGAIMDYDGLKEMGSGLG 316
           +   G +R        +I GG  +              +G +     D    +E  + + 
Sbjct: 313 DAAEGYVRDP----KKLISGGPMMGFALMDIDIPTTKTSGALLALSYDDVSEQETTACIN 368

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHES--------CGQCTPCREGTG------WMMRVM 362
               +       I   + + S     E         C +C  C             ++ M
Sbjct: 369 CGRCVEACPENLIPSRLSKFSDHGDKEQFEKWYGLECIECGSCSYACPAKQPLAQAIKTM 428

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRT 389
           +++V    +K   +   ++S  ++  +
Sbjct: 429 KKIVLAEKRKSRKER-KDMSNLLKVSS 454


>gi|218961809|ref|YP_001741584.1| electron transport complex protein rnfC, NAD and 4Fe-4S binding
           subunit (rnfC fragment) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730466|emb|CAO81378.1| electron transport complex protein rnfC, NAD and 4Fe-4S binding
           subunit (rnfC fragment) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 439

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 117/349 (33%), Gaps = 51/349 (14%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + +   +  +G+ G GGAGF T +K S       D    +++N  E EP    D  +M  
Sbjct: 124 EEMKKRIGEAGICGMGGAGFPTLVKLSPPADKPID---TVILNGVECEPYLTSDHRLMLE 180

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           +   +I G  +    + A    I +          +Q           L  N        
Sbjct: 181 KGEEIIIGLKLIMKILSAKKGMIGIEANKPDAIAKMQE----------LTKNEP-----H 225

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I V      Y  G E  L+ +   K+  P      P  VG+      V NV +   +   
Sbjct: 226 IEVVPLKLRYPQGAEKQLIYAAT-KRKVP--AGGLPLEVGI-----VVQNVGTAFAIYEA 277

Query: 221 LRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           +R           +     ++ +++G  V  P  +   +   F EL++   G        
Sbjct: 278 IRY----------QKPLIQRVITVTGSPVTKPQNLLARIGTPFSELVDFCGGTKEEVGKV 327

Query: 280 LLAVIPGGSSVPCLPA------GQMRGAIMDYDGLKEMGSGLGTA---AVIVMDRSTDI- 329
           +      G ++P L A      G +     +   L E G+ L  A    V  ++    + 
Sbjct: 328 ICGGPMMGFALPTLEATVGKGSGGLVLMNTEDARLNEEGNCLRCARCVDVCPLNLVPCMI 387

Query: 330 IKAIWRLSVFYKHES----CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           + A+   +      S    C +C  C       +R+++ +  G  +  E
Sbjct: 388 VSAVKYDNQKLAVRSGLNDCMKCGACAYVCPAQIRLVQYIDTGKIRYAE 436


>gi|91228908|ref|ZP_01262808.1| electron transport complex protein RnfC [Vibrio alginolyticus
           12G01]
 gi|91187539|gb|EAS73871.1| electron transport complex protein RnfC [Vibrio alginolyticus
           12G01]
          Length = 878

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 124/347 (35%), Gaps = 66/347 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QETSDALIDVIRLAGISGMGGAGFPTAKK----IQSGFARTEILIVNAAECEPYITSDDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     LI+G  I    +      I +        ++L+AA                 
Sbjct: 186 LMQEHAEELIQGIEIVEHILTPKLTIIGIEDNKPEAIKALEAA----------------A 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 230 INKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGAIPADIGI-----LVQNVGSLYA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+++       
Sbjct: 282 IKRAVIDGEPMIK----------RIVTLTGKTFKQPRNVWALLGTPVQALLDEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  + V +   +  I+    R
Sbjct: 329 ADKKLQRLIMGGPMMGF---------------------TLPHSQVPITKTANCILAPTRR 367

Query: 336 LSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
               +++E  C +C+ C E       ++ + ++  A+  E D L E+
Sbjct: 368 EISPHQYEMECIRCSQCAEACP--ASLLPQQLQWHAKAEEYDKLEEL 412


>gi|148977610|ref|ZP_01814186.1| electron transport complex protein RnfC [Vibrionales bacterium
           SWAT-3]
 gi|145963125|gb|EDK28393.1| electron transport complex protein RnfC [Vibrionales bacterium
           SWAT-3]
          Length = 964

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 133/375 (35%), Gaps = 71/375 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++   L   + R   + V+    K  D +++ ++ +G+ G GGAGF T  K     +   
Sbjct: 111 IKPDGLDAWIER---NPVEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----QSGL 163

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
            R   L+VNA E EP    D  +++     +++G  I    +      I +        +
Sbjct: 164 GRTDILIVNAAECEPYITSDDKLLQEHAEEVLKGIEIVEHILQPKLTVIGIEDNKPAAIK 223

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +++ A                  D DI++      Y  G E  L++ L  K+        
Sbjct: 224 AVEVA----------------AKDKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PAGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            PA++G+      V NV S+  +   +  G    +          ++ +++G     P  
Sbjct: 265 IPADIGV-----LVQNVGSLYSIKRAVIDGEPVVN----------RVVTLTGKTFKQPRN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +     EL+E+           L  +I GG  +                       
Sbjct: 310 VWALLGTPVHELLEEFGY---KADKKLPRLILGGPMMGF--------------------- 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQK 372
            L  A V +   S  I+    R      +E  C +C+ C E       ++ + ++  A+ 
Sbjct: 346 TLPHANVPITKTSNCILAPTRREIAPSTYEMECIRCSACAEACP--ASLLPQQLQWHAKA 403

Query: 373 REIDLLYEVSKNIEG 387
            E+D   E+  NI+ 
Sbjct: 404 NELDKCEEL--NIKD 416


>gi|281357469|ref|ZP_06243957.1| electron transport complex, RnfABCDGE type, C subunit [Victivallis
           vadensis ATCC BAA-548]
 gi|281316072|gb|EFB00098.1| electron transport complex, RnfABCDGE type, C subunit [Victivallis
           vadensis ATCC BAA-548]
          Length = 440

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 104/317 (32%), Gaps = 63/317 (19%)

Query: 42  WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
            ++     +GL G GGA F T +K S  P    D    L++N  E EP    D  +M  +
Sbjct: 127 ELLKRTADAGLVGMGGAAFPTHVKLSPPPDKTID---TLILNGAECEPYLTADHRLMLEQ 183

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
           P  ++EG  I++  +     +I V    I   E+L                 +   +  I
Sbjct: 184 PERVLEGAAISAKILNVKNVYIGVEANKIDAIEAL----------------GRRAAEFGI 227

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V      Y  G E  L+ ++ G+K         P + G       V NV + A +   +
Sbjct: 228 KVATLKVQYPQGSEKQLIMAITGRKV---PTGGLPMDAG-----CVVQNVGTAAAMTDAV 279

Query: 222 RRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
            RG               ++ +I+G  V  P      +     + IE   G         
Sbjct: 280 CRGIPLV----------ERVTTITGEVVKNPGNWLLKIGTPVIKAIEFAGGVTAEPGK-- 327

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
             +I GG  +                   E+     T+ ++++      ++        Y
Sbjct: 328 --LILGGPMMGFAQKSF------------EVPVAKNTSGILLLP-----VELSMN----Y 364

Query: 341 KHESCGQCTPCREGTGW 357
               C +C  C EG   
Sbjct: 365 GSTGCIRCGRCVEGCPM 381


>gi|256544870|ref|ZP_05472241.1| Na(+)-translocating NADH-quinone reductase, A subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399369|gb|EEU12975.1| Na(+)-translocating NADH-quinone reductase, A subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 443

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 118/360 (32%), Gaps = 57/360 (15%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
             +    ++ I+  +K +GL G GGA F   +K+S      +     +++N  E EP   
Sbjct: 120 KDVTNLTKEKIVEAMKENGLVGMGGASFPAHIKYS-----PNKPIDTVIINGAECEPYVT 174

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  I++ +P  +++   +   A+ A    I +        E ++ A+           N
Sbjct: 175 CDDFILKTKPEVIVDALELLVQAVDAKKGIIAIEDNKAEAIEKVKKALAN--------KN 226

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
           S       + V      Y  G+E  ++ ++   +  P      P +VG+      V+NV 
Sbjct: 227 SS-----KLEVATMVTKYPQGDEKRIINAVL-HREVP--SGGLPMDVGV-----IVSNVS 273

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           S   V   +  G      +      G         +  P      +  +FD +IE+  G 
Sbjct: 274 SANAVYEAVYYGKPLIERYMTVTGHG---------IKNPSNFLVRIGTSFDHMIEEAGGL 324

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL-----KEMGSGLGTAAV-IVMDRS 326
                     VI GG  +        +      + +     +E  + +    +      +
Sbjct: 325 TEEAGK----VINGGPMMGIAQPNINQPVEKASNCILVLNKEESKAPITNPCIRCAKCVN 380

Query: 327 TDIIKAI-WRLSVFYKHES-----------CGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
              +  +   +  F   E            C +C  C         ++E +  G  Q R+
Sbjct: 381 VCPVGLMPLLIHKFSLKEKFDKAQDLHILDCIECGSCSYICPSKRPLVEAIRFGKRQIRQ 440


>gi|324549306|gb|ADY49747.1| NADH dehydrogenase [ubiquinone] flavoprotein 1 [Ascaris suum]
          Length = 112

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/95 (57%), Positives = 70/95 (73%), Gaps = 5/95 (5%)

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           MD+D L E  SGLGTAAVIVM++  DI+K I RLS+FYKHESCGQCTPCREG  W+ +VM
Sbjct: 1   MDFDSLIEAQSGLGTAAVIVMNKQADIVKCIARLSLFYKHESCGQCTPCREGCNWLNKVM 60

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGR-----TICA 392
            R V G A+  EID+L+E+S+++EG       +C 
Sbjct: 61  WRFVHGRAKPDEIDMLWEISRHMEGAHNLCSCLCG 95


>gi|332299855|ref|YP_004441776.1| Electron transport complex protein rnfC [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176918|gb|AEE12608.1| Electron transport complex protein rnfC [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 450

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 125/374 (33%), Gaps = 50/374 (13%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + G    D + +     +   +E     II+ +   G+ G GGA F T +K S  P   +
Sbjct: 100 VDGDEWVDYIDQTD--TLVTDIELDAKQIIDRIAEMGIVGMGGATFPTHVKLSPPPGQSA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D   Y+++NA E EP    D  +MR +   ++ GC I   A  A    I +         
Sbjct: 158 D---YVIINAVECEPYLTSDDALMRVKAMEIMVGCAIIMKAANAPRTLIGIENNKPDAIR 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            ++ A +        G          I V      Y  G E  L+++L  K+        
Sbjct: 215 IMRDAAERAKEFLPEGQ--------SIAVVPLKKRYPQGGEKQLIDALIRKQV---ASGA 263

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            P + G       V NV +   +          Y    +      ++ +++G  +  P  
Sbjct: 264 LPISTG-----AIVQNVGTTFAI----------YEAVMKHKPLIERIITVTGRAIARPSN 308

Query: 254 VEESMSITFDELIEK-----------HCGGIRGGWDNLLAVIPG--GSSVPCLPAGQMRG 300
            +  +      LI+              GG   G   +   IP   GSS   + + +   
Sbjct: 309 FKARIGTPMQTLIDAAGGYAEEPGKIIGGGPMMGRALVSTDIPVAKGSSGLLILSAKEST 368

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH---ESCGQCTPCREGTGW 357
               +D ++       +   + ++ +  +   I++     +H     C +C  C      
Sbjct: 369 RPEMHDCIRCGKCV--SVCPMGLNPAFLMRDTIYKDWESTEHNYIADCIECGSCSYTCPA 426

Query: 358 MMRVMERLVKGIAQ 371
              +++ +  G   
Sbjct: 427 GRPLLDYIRVGKQT 440


>gi|291460671|ref|ZP_06600061.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416630|gb|EFE90349.1| Na(+)-translocating NADH-quinone reductase, A subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 485

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 53/345 (15%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +          R+ I++ V+ +G+ G GGAGF T +K S       ++  Y +VN  E 
Sbjct: 139 GFGEKRDYKSLSREEIVSIVRDAGIVGLGGAGFPTAVKLS---PKEPEKIDYFLVNGAEC 195

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP  C D   M   P  LI G  +           I +          L   V       
Sbjct: 196 EPYLCSDYRDMLEYPERLIGGLRVLLRLFPNAAGKICIEDNKPEAIRKLSELVKS----- 250

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                     +  + V      Y  G E  L+ +  G+K    +    PA+ G+      
Sbjct: 251 ----------EDRMEVLSLRTRYPQGGERQLIYAATGRKINSSM---LPADAGV-----V 292

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V+NV+++  +   +                  ++ +++G  V  P      + I++ E+I
Sbjct: 293 VDNVDTVIAIYDAVCESMPLVR----------RILTVTGDAVVKPGNFRVPLGISYQEII 342

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPA----------GQMRGAIMDYDGLKEMGSGLG 316
           +   G        +      G  +  L              ++  +        +  G  
Sbjct: 343 DAAGGFKEDPEKVISGGPMMGVPLFKLDVPLVKNSSSILAFLKDPVSAEPTTACINCGRC 402

Query: 317 TAA-----VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +A     +  +   + + K   R +  Y  E C +C  C     
Sbjct: 403 VSACPENLMPTLMMQSALRKDTARFTKLYGME-CIECGCCSYVCP 446


>gi|324114121|gb|EGC08094.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Escherichia
           fergusonii B253]
 gi|325497743|gb|EGC95602.1| propanediol utilization protein: ferredoxin pduS [Escherichia
           fergusonii ECD227]
          Length = 446

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 102/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          +    +VNA E EP    D+ +M  +   L+ G +    A GA 
Sbjct: 29  FPTWVKLQA-------QVDTFLVNAAECEPMLKVDQQLMAQQAERLVRGVLYGMKATGAS 81

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++    +    A+ E   +             +I +H     Y  G+E   +
Sbjct: 82  HGIIALKEKYQPAIK----ALSELLPA-------------EIRLHILPDVYPAGDEVLTI 124

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P +VG+      VNNV+++  +   + +G +             
Sbjct: 125 WLATGRRVPP---AALPVSVGI-----VVNNVQTVLNIARAVEQGLAVTR---------- 166

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + I+  E+++   G            I GG  +  L      
Sbjct: 167 RTLTVNGAVARPVTLTVPIGISLREVLQMAGGATIDTP----GFINGGPMMGSLITS--L 220

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+         +      C QC  C +   
Sbjct: 221 DTPVSKT----------TGGLLVLPDSHPLIQRRKQNDNAVLSVARTVCEQCRLCTDLCP 270

Query: 357 W 357
            
Sbjct: 271 R 271


>gi|225017719|ref|ZP_03706911.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum
           DSM 5476]
 gi|224949512|gb|EEG30721.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum
           DSM 5476]
          Length = 436

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/389 (19%), Positives = 126/389 (32%), Gaps = 80/389 (20%)

Query: 20  LSDSMSRGH----------------WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           L D  + G                  ++V       ++  +  V   GL G GGAGF T 
Sbjct: 85  LMDYTAYGGVVVPAIVIETDGKQEVHESVKPPRITTKEEFLEAVYEQGLVGLGGAGFPTH 144

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            K SF   V  D    L++N  E EP    D   M      ++ G       +G   A I
Sbjct: 145 TKLSFGEDVKVDI---LIINGAECEPYITSDNREMVENADDIVYGIEQVQKFLGIERALI 201

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
            +                      LL   ++      I V      Y  G E  L+ S  
Sbjct: 202 GIEDNKQEALS-------------LLAQKTESSKG--IEVVSLKSRYPQGAEKVLIYSTT 246

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G+      +   PA VG+      V NV SI+     LR G    +          K  +
Sbjct: 247 GRVV---PEGAIPAEVGV-----VVMNVTSISKFGRYLRTGMPLTA----------KRLT 288

Query: 244 ISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAI 302
           + G  +  P  V   +     ++I   CGG          ++ GG  +       +    
Sbjct: 289 VDGDCITNPQNVRALIGTPVQDVI-DFCGG---FKKTPKKILCGGPMMGV----ALLDTS 340

Query: 303 MDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
                +K   + L  ++ +++D+ T                +C +C  C       + +M
Sbjct: 341 TPV--IKNNNAILALSSDVLLDQPT---------------TACIRCGKCIGACP--VHLM 381

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
              ++     +++++L ++S N+     C
Sbjct: 382 PVSIEKAYDAQDVEMLQKLSVNLCINCGC 410


>gi|188585133|ref|YP_001916678.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349820|gb|ACB84090.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 440

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 98/312 (31%), Gaps = 59/312 (18%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + I N VK +G+ G GGA F T +K S       D    +++N  E EP    D  +M
Sbjct: 121 SAEEIKNVVKEAGIVGLGGATFPTHVKISPPEDKPID---TVLINGAECEPFLTSDHRLM 177

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             +   +I G      A+      I +        E++ + V +               D
Sbjct: 178 VEQAEKIIFGLRAIMKAVNCDRGIIAIEDNKPDAVEAMNSLVTD---------------D 222

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             + V      Y  G E  L+++   ++         P +VG       VNN  +   V 
Sbjct: 223 DSLEVMTFETKYPQGAEKQLIKAALDREV---PSGGLPMDVG-----CVVNNTGTALAVA 274

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             LR                 ++ +ISG  +         +     +LIE+  G      
Sbjct: 275 DALR----------TNKPILERVVTISGPGIEQSGNFMVRLGTLASDLIEQLGGMG---- 320

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
           D    +I GG  +           I    G+      L    V + +    I        
Sbjct: 321 DQTRKIIMGGPMMGISQPNADFPVIKGTSGV----LLLTDQEVQIFEERPCI-------- 368

Query: 338 VFYKHESCGQCT 349
                 +CG+C 
Sbjct: 369 ------NCGRCV 374


>gi|333031168|ref|ZP_08459229.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           coprosuis DSM 18011]
 gi|332741765|gb|EGJ72247.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           coprosuis DSM 18011]
          Length = 445

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 139/406 (34%), Gaps = 80/406 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + G    +S+ R     + K  E   + I+  +   G+ G GGA F T +K +  P   +
Sbjct: 100 VDGDEWEESIDRSD--ALIKDCELSSEDIVKRIADCGVVGLGGACFPTQVKLTPPPSFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M  +   +I G  I   A+  + AFI +         
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEKAEEIIVGVTIIMKAVKVNKAFIGIENNKPDAIA 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +   V   YA               I V      Y  G E  L++++  ++      P 
Sbjct: 215 LMTK-VASTYAG--------------IEVVPLQVKYPQGGEKQLIDAVISRQVSSGALPI 259

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
                        V NV +   +   ++          +      ++ +++G  +N P  
Sbjct: 260 STG--------AVVQNVGTAYAIYEAVQ----------KNKPLFERVITVTGKSLNKPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +     +LI   CGG+    +    VI GG          M  A+M+     E+ +
Sbjct: 302 FLARIGTPMQQLI-DACGGL---PEGAGKVIGGGP--------MMGKALMN----TEVPT 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
             G++ +++M+      +   R  +    ++C +C  C       +           ++ 
Sbjct: 346 AKGSSGILIMNE-----EEAKRGEI----QTCIRCAKCVSICPMGLEPYLLSALAEHREF 396

Query: 374 EIDLLYEVSKNIEGRT-------------ICALGDAAAWPIQGLIK 406
           E      +   IE  +              C LG A    + G+I+
Sbjct: 397 EEMESERIMDCIECGSCQFTCPTNRPLLDFCRLGKAT---VGGMIR 439


>gi|323486693|ref|ZP_08092014.1| hypothetical protein HMPREF9474_03765 [Clostridium symbiosum
           WAL-14163]
 gi|323692168|ref|ZP_08106411.1| electron transport complex [Clostridium symbiosum WAL-14673]
 gi|323400074|gb|EGA92451.1| hypothetical protein HMPREF9474_03765 [Clostridium symbiosum
           WAL-14163]
 gi|323503742|gb|EGB19561.1| electron transport complex [Clostridium symbiosum WAL-14673]
          Length = 441

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 119/349 (34%), Gaps = 64/349 (18%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            + N     +  ++ I N +K +G+ G GGAGF T +K +   +   D    ++VN  E 
Sbjct: 112 GFGNARDYTKLSKEEIRNIIKEAGIVGLGGAGFPTHVKLTPKDEAAIDH---VIVNGAEC 168

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +M   P  +I G  +           I +        + L   V +     
Sbjct: 169 EPYLTSDYRVMMERPEQIIGGLKVILQLFDNAKGIIGIENNKPEAIKKLTEMVKD----- 223

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                     +  I V      Y  G E  L+ ++ G++    +    PA+ G       
Sbjct: 224 ----------EPRIEVCPLLTKYPQGGERTLIYAVTGREINSSM---LPADAG-----CV 265

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V+N++++A +   +                  K+ +++G  V  P   +  +   +  L+
Sbjct: 266 VDNIDTVAAIYDAVCNTTPLLR----------KIITVTGDAVANPQNFQVRLGTNYKRLL 315

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           E   GG +   +    +I GG  +                 L  +   +   +  +   +
Sbjct: 316 E-AAGGFKQEPEK---MISGGPMMG--------------QALFSLDFPVAKTSSALTTFT 357

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            D + A+       +   C +C  C +      + ++M    +    ++
Sbjct: 358 KDQVAAM-------EPTPCIRCGKCVDVCPEHLVPQMMMDAAERHDMEK 399


>gi|308094766|ref|ZP_07663043.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AN-5034]
 gi|308093502|gb|EFO43197.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AN-5034]
          Length = 772

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 119/346 (34%), Gaps = 64/346 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 33  QESADALIDIIRLAGISGMGGAGFPTAKK----IQSGIARTEILIVNAAECEPYITADDK 88

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     LI+G  I    +      I +        ++L++A                 
Sbjct: 89  LMQEHAEELIQGIEIVEHILKPKLTIIGIEDNKPDAIKALESA----------------A 132

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 133 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGSIPADIGI-----LVQNVGSLYS 184

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+++       
Sbjct: 185 IKRAIIDGEPMI----------ERVVTLTGKTFKQPRNVWALLGTPVQALLDEFGY---K 231

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                 L      +   A  ++  +   I A   
Sbjct: 232 ADKKLQRLIMGGPMMGF--------------TLPHSQVPITKTANCILAPTRHEISAHQY 277

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
                    C +C  C E       ++ + ++  A+  E D L E+
Sbjct: 278 EME------CIRCGQCAEACP--ASLLPQQLQWHAKAEEYDKLEEL 315


>gi|28898878|ref|NP_798483.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260897154|ref|ZP_05905650.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           Peru-466]
 gi|260902709|ref|ZP_05911104.1| electron transport complex, rnfABCDGE type, c subunit family
           protein [Vibrio parahaemolyticus AQ4037]
 gi|28807097|dbj|BAC60367.1| RnfC-related protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087160|gb|EFO36855.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           Peru-466]
 gi|308109009|gb|EFO46549.1| electron transport complex, rnfABCDGE type, c subunit family
           protein [Vibrio parahaemolyticus AQ4037]
          Length = 869

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 119/346 (34%), Gaps = 64/346 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QESADALIDIIRLAGISGMGGAGFPTAKK----IQSGIARTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     LI+G  I    +      I +        ++L++A                 
Sbjct: 186 LMQEHAEELIQGIEIVEHILKPKLTIIGIEDNKPDAIKALESA----------------A 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 230 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGSIPADIGI-----LVQNVGSLYS 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+++       
Sbjct: 282 IKRAIIDGEPMI----------ERVVTLTGKTFKQPRNVWALLGTPVQALLDEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                 L      +   A  ++  +   I A   
Sbjct: 329 ADKKLQRLIMGGPMMGF--------------TLPHSQVPITKTANCILAPTRHEISAHQY 374

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
                    C +C  C E       ++ + ++  A+  E D L E+
Sbjct: 375 EME------CIRCGQCAEACP--ASLLPQQLQWHAKAEEYDKLEEL 412


>gi|154482955|ref|ZP_02025403.1| hypothetical protein EUBVEN_00653 [Eubacterium ventriosum ATCC
           27560]
 gi|149736239|gb|EDM52125.1| hypothetical protein EUBVEN_00653 [Eubacterium ventriosum ATCC
           27560]
          Length = 437

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 108/319 (33%), Gaps = 60/319 (18%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            +++I   VK  G+ G GGA F T +K +       D   Y++VNA E EP    D   +
Sbjct: 118 SKEYIREAVKDCGVVGLGGACFPTNVKLTPKDDNAID---YVIVNAAECEPYITSDYRRL 174

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             +P  +IEG  I           I V        E+L+           L  N      
Sbjct: 175 VEQPQEVIEGLKIVLSLFENAKGVIAVENNKPDVIENLKK----------LTENED---- 220

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I V      Y  G E  ++ ++  +K    +    PA+ G       V+NV++I  + 
Sbjct: 221 -RIQVAELKTKYPQGSERHIIYAVTKRKINSSM---LPADGG-----CIVDNVDTIYNIY 271

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             ++                 ++ ++SG+ +  PC +      +  +L+E+  G      
Sbjct: 272 QAVKF----------HKPLTERIVTVSGNGIKNPCNLLVPFGTSHSQLVEEAGGMDESVE 321

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG  +    A       +            G++A++                
Sbjct: 322 KIL----SGGPMMG--QAMFTLDVPV----------IKGSSALLAFKNDQVAHAKTTNCL 365

Query: 338 VFYKHESCGQCTP-CREGT 355
                 +CG+C   C EG 
Sbjct: 366 ------NCGKCAQVCPEGL 378


>gi|149378172|ref|ZP_01895889.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Marinobacter algicola DG893]
 gi|149357534|gb|EDM46039.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Marinobacter algicola DG893]
          Length = 612

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/323 (18%), Positives = 108/323 (33%), Gaps = 64/323 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  R+ ++  ++ +G+ G GGAGF T +K            + L++N  E EP    D  
Sbjct: 121 DLDRETVLERIRDAGISGMGGAGFPTNIKLRPPRDRK---VNTLILNGAECEPYITADDM 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            MR     +I G  I ++ +      I +         +L+ A +               
Sbjct: 178 SMRENAGEIIAGLRIMAWVLRPERVVIGIEDNKPEAISALRKAAEGTQT----------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 +      Y  G E  L++ L G +         PA++G+        NV +   
Sbjct: 227 -----EIAVIPTKYPSGGEKQLIQILTGMEV---PSGGIPADIGV-----MCQNVGTAIA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   + RG    S          ++ +++G  V  P   E  +  + D L+ +       
Sbjct: 274 VSAAIHRGEPLIS----------RVTTVTGDAVTDPGNFEVLIGTSIDYLLAQAG----P 319

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW- 334
             + L  ++ GG  +                        L T A+ V+  +  +I A   
Sbjct: 320 EQNKLHRLVLGGPMMGY---------------------TLETPAIPVVKTTNCVIAATAT 358

Query: 335 RLSVFYKHESCGQCTPCREGTGW 357
            L      + C +C+ C E    
Sbjct: 359 ELPDPAPEQPCIRCSMCAEACPM 381


>gi|331085097|ref|ZP_08334183.1| hypothetical protein HMPREF0987_00486 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407880|gb|EGG87370.1| hypothetical protein HMPREF0987_00486 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 90/265 (33%), Gaps = 41/265 (15%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           W  V  + +  ++ I+N +  +G+ G GGAGF T +K S       ++  Y++ N  E E
Sbjct: 110 WREVIPLEQMKKEEILNCIAEAGIVGMGGAGFPTRVKLS---PKEPEKIEYIIANCAECE 166

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M   P  L+ G  +             +        E L+           
Sbjct: 167 PYITADYRRMLETPEKLVGGMKVVLQLFENAKGIFGIEDNKPDCIEKLKE---------- 216

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           L  +        + V      Y  G E  L+ +   +     +    PA+ G       V
Sbjct: 217 LTKDEP-----RMEVKVLQTKYPQGAERQLIYATTKRAINSSM---LPADAG-----CIV 263

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NVE++  +   +  G   Y           ++ ++SG  V  P        ++  ELIE
Sbjct: 264 DNVETLIAIYEAVISGKPLY----------ERVVTVSGDAVKEPGNFLAPCGMSQMELIE 313

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPC 292
              G           VI GG  +  
Sbjct: 314 MAGG----FEGVPEKVISGGPMMGF 334


>gi|332981731|ref|YP_004463172.1| RnfABCDGE type electron transport complex subunit C [Mahella
           australiensis 50-1 BON]
 gi|332699409|gb|AEE96350.1| electron transport complex, RnfABCDGE type, C subunit [Mahella
           australiensis 50-1 BON]
          Length = 442

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 108/321 (33%), Gaps = 59/321 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     II+ +K +G+ G GGA F T +K S  P     R   +++N  E EP    D  
Sbjct: 119 KLSDKEIIDVIKEAGIAGLGGAAFPTHVKLSPPPDK---RVELVIINGAECEPYLTCDHR 175

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  +   ++ G      A+G     I +          +  A                G
Sbjct: 176 LMLEQTDDVVYGTRAIMKALGVSKGIIAIENNKPDAIAVMLKA--------------ASG 221

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
           Y  +I V      Y  G E  L++++ GK+         PA+VG     T V+NV + A 
Sbjct: 222 YANNIEVVALKTKYPQGAEKQLIKAITGKEV---PSGGLPADVG-----TVVDNVGTAAA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   ++ G            RG         +  P  +   +   F +LI++  G     
Sbjct: 274 IARAIKTGMPLIERAVTVTGRG---------IKEPANLMVRIGTPFSQLIDECGG----F 320

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D    VI GG  +    A       +            GT+ ++V+         +   
Sbjct: 321 ADKPGKVIMGGPMMGI--AQYSLDVPV----------IKGTSGILVLTEEEAQAPQV--- 365

Query: 337 SVFYKHESCGQCTPCREGTGW 357
                 + C +C  C E    
Sbjct: 366 ------QVCIRCARCVEACPM 380


>gi|86147961|ref|ZP_01066265.1| electron transport complex protein RnfC [Vibrio sp. MED222]
 gi|85834286|gb|EAQ52440.1| electron transport complex protein RnfC [Vibrio sp. MED222]
          Length = 902

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/378 (18%), Positives = 133/378 (35%), Gaps = 71/378 (18%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
              ++   L   + +   + V+    K  D +++ ++ +G+ G GGAGF T  K     +
Sbjct: 108 CVVIKPDGLDAWIEK---NPVEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----Q 160

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
               R   L+VNA E EP    D  +++     +++G  +    +      I +      
Sbjct: 161 SGLGRTDILIVNAAECEPYITSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPD 220

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
             ++L+ A                  D DI++      Y  G E  L++ L  K+     
Sbjct: 221 AIKALEIA----------------ARDKDIVIRVIPTKYPSGGEKQLIKILTNKEV---P 261

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNY 250
               PA++G+      V NV S+  +   +  G    +          ++ +++G     
Sbjct: 262 AGGIPADIGV-----LVQNVGSLYSIKRAVIDGEPVVN----------RVVTLTGKTFKQ 306

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P  V   +     EL+E+           L  +I GG  +                    
Sbjct: 307 PRNVWALLGTPVHELLEEFGY---KADKKLPRLILGGPMMGF------------------ 345

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGI 369
               L  A V +   S  I+    R      +E  C +C+ C E       ++ + ++  
Sbjct: 346 ---TLPHANVPITKTSNCILAPTRREISPSTYEMECIRCSACAEACP--ASLLPQQLQWH 400

Query: 370 AQKREIDLLYEVSKNIEG 387
           A+  E+D   E+  NI+ 
Sbjct: 401 AKANELDKCEEL--NIKD 416


>gi|89092705|ref|ZP_01165658.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92]
 gi|89083217|gb|EAR62436.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92]
          Length = 1047

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 117/344 (34%), Gaps = 64/344 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             ++      +  +++ ++  G+ G GGAGF T +K            + LV+NA E EP
Sbjct: 114 QGLEDYQSISKQELLDFIRFRGISGMGGAGFPTDVKLHL---GDDHIVNTLVINAMECEP 170

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +MR     +++G  I +  +  H   I       +   +++ AV E       
Sbjct: 171 YITADDMLMREHADQVVKGIEIIAHLLKPHHVMIGTEDNKPQAIRAMEQAVAESK----- 225

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                    +DI +      Y  G E  L++ L G +         PA+VG+        
Sbjct: 226 ---------LDIDIIVVPTVYPSGGEKQLIKLLTGVEV---PSGKIPADVGI-----VCQ 268

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV + + +   +  G    S          ++ +++G  + +P  +   +    + L++ 
Sbjct: 269 NVGTASAIYDAVYNGVPLIS----------RIVTLTGDALGHPHNMRALIGTPLETLLQA 318

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                      L  ++ GG  +                        + + ++ ++  +  
Sbjct: 319 A----EVKDKELYRLVIGGPMMGF---------------------TVDSQSIPMIKTTNC 353

Query: 329 IIKAIWRLSVFY-KHESCGQCTPCREGTG--WMMRVMERLVKGI 369
           +I A +           C +C  C +      + + +    KG 
Sbjct: 354 VIAATYDEMPPAPAANPCIRCGMCEQVCPAELLPQQLHWFAKGK 397


>gi|325661148|ref|ZP_08149775.1| hypothetical protein HMPREF0490_00508 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472655|gb|EGC75866.1| hypothetical protein HMPREF0490_00508 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 438

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 89/265 (33%), Gaps = 41/265 (15%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           W  V  + +  ++ I+N +  +G+ G GGAGF T +K S       ++  Y++ N  E E
Sbjct: 110 WREVIPLEQMKKEEILNCIAEAGIVGMGGAGFPTRVKLS---PKEPEKIEYIIANCAECE 166

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M   P  L+ G  +             +        E L+           
Sbjct: 167 PYITADYRRMLETPEKLVGGMKVVLQLFENAKGIFGIEDNKPDCIEKLKE---------- 216

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           L  +        + V      Y  G E  L+ +   +     +    PA+ G       V
Sbjct: 217 LTKDEP-----RMEVKVLQTKYPQGAERQLIYATTKRAINSSM---LPADAG-----CIV 263

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NVE++  +      G   Y           ++ ++SG  V  P        ++  ELIE
Sbjct: 264 DNVETLIAIYEAAISGKPLY----------ERVVTVSGDAVKEPGNFLAPCGMSQMELIE 313

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPC 292
              G           VI GG  +  
Sbjct: 314 MAGG----FEGVPEKVISGGPMMGF 334


>gi|332297502|ref|YP_004439424.1| Electron transport complex protein rnfC [Treponema brennaborense
           DSM 12168]
 gi|332180605|gb|AEE16293.1| Electron transport complex protein rnfC [Treponema brennaborense
           DSM 12168]
          Length = 467

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 110/352 (31%), Gaps = 54/352 (15%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
               ++  +  ++ +G+ G GGA F T +K   +      +  Y++ NA E EP    D 
Sbjct: 137 FACSKEEALTRIREAGIVGMGGAAFPTHVK---LNPPAGKKIEYVLANAAECEPYLTIDE 193

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
             M   P  LI+G  IA    GA    + +          L+  + +             
Sbjct: 194 RTMIETPQKLIDGLAIAMNVTGAAHGIVVLEDNKKHVYPVLEKTIADA------------ 241

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           GY   I +      Y  G E  +  +  G++         PA+VG       ++NV ++ 
Sbjct: 242 GYTDTIGIVLCKTKYPQGGEKNITVAAVGREI---PAGGLPADVG-----CVIDNVGTLC 293

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +    R G           +RG  +    G    P  ++  +     +LI         
Sbjct: 294 AISEAFREGKPLV-------DRGLTI--SGGACETPKNLKVPVGTLVGDLI----PANVT 340

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG----------LKEMGSGLGTAAVIVMDR 325
               +  +I GG  +             +  G          L +    +G    I +  
Sbjct: 341 LRPGVAKIISGGPMMGFAMTNANFPVAKNTSGVLFLTAGETYLADENPCIGCGKCIDVCS 400

Query: 326 STDIIKAIWRLSVFYKHES--------CGQCTPCREGTGWMMRVMERLVKGI 369
                  I R      +E         C +C  C       +R+++R   G 
Sbjct: 401 CRLAPVLIVRALKAGDYEEAKRYGLMDCVECGTCGYICPAHVRLIQRFRIGK 452


>gi|153814812|ref|ZP_01967480.1| hypothetical protein RUMTOR_01027 [Ruminococcus torques ATCC 27756]
 gi|317500331|ref|ZP_07958556.1| Na(+)-translocating NADH-quinone reductase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331089660|ref|ZP_08338559.1| hypothetical protein HMPREF1025_02142 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847843|gb|EDK24761.1| hypothetical protein RUMTOR_01027 [Ruminococcus torques ATCC 27756]
 gi|316898272|gb|EFV20318.1| Na(+)-translocating NADH-quinone reductase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330405028|gb|EGG84566.1| hypothetical protein HMPREF1025_02142 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 439

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/257 (21%), Positives = 89/257 (34%), Gaps = 41/257 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  R+ II  +  +G+ G GGAGF T +K S       ++  Y++ N  E EP    D  
Sbjct: 118 EMTREEIIERIGEAGIVGMGGAGFPTRVKLS---PKEPEKIEYIIANCAECEPYITADYR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M      L+ G  I             V        E L               N +  
Sbjct: 175 RMLENTGQLVNGMRIILSLFPNAKGIFAVEDNKKDCIEKL---------------NKETE 219

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D ++ V      Y  G E  L+ ++  +     +    PA+ G       V+NVE++  
Sbjct: 220 NDPNMEVKALMTKYPQGAERQLIYAVTKRAINSSM---LPADAG-----CIVDNVETLIG 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ ++SG  +N P   +  +     ELIE   GG   
Sbjct: 272 IHMAVAEG----------KPLTERVVTVSGDAINSPGNFKVLLGTNHMELIE-AAGGFSQ 320

Query: 276 GWDNLLAVIPGGSSVPC 292
             + L   I GG  +  
Sbjct: 321 QPEKL---ISGGPMMGF 334


>gi|261867803|ref|YP_003255725.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413135|gb|ACX82506.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 745

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 122/408 (29%), Gaps = 81/408 (19%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
               ++   L     +     ++  L +  + +I ++  +G+ G GGA F T  K     
Sbjct: 107 TCVHIKADGLDQWREQ---TPLEDFLSQTPEQLIEKIYQAGIAGLGGAVFPTAAK----I 159

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
                +   L++N  E EP    D  +MR     +IEG  I  + +      I V     
Sbjct: 160 HSAEKQVKLLIINGAECEPYITCDDRLMRDYADEIIEGVRILRYILRPEKVVIAVEDNKP 219

Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
           +  +SL+ A+                   DI +      Y  G    L++ L G +    
Sbjct: 220 KAVKSLERALHGAN---------------DIEIRVIPTKYPSGAAKQLIQVLTGMEV--- 261

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VN 249
                 + +G+      + N+ +   +   +                  ++ +++G  + 
Sbjct: 262 PSGQRSSGIGV-----LMQNIGTAFAIKRAVMDDEPLI----------ERVVTLTGDKIA 306

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
                          L+ +        +D+   V  GG  +  +       A M      
Sbjct: 307 DKGNYWARFGTPIYHLLRETG----YQYDDRFPVFMGGPMMGFILPD--LNAPMTKVT-- 358

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG--WMMRVMERLV 366
                              ++          + E +C +C+ C +      M + +    
Sbjct: 359 -----------------NCLLAPDHFEYAPSEEEKNCIRCSACSDACPVKLMPQQLYWFA 401

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
           +    ++  +  Y +   IE    C      A+       LI+ FR  
Sbjct: 402 RSEDHEKSEE--YSLKDCIE----CG---VCAYVCPSHIPLIQYFRRE 440


>gi|260655573|ref|ZP_05861061.1| electron transport complex, RnfABCDGE type, C subunit [Jonquetella
           anthropi E3_33 E1]
 gi|260630021|gb|EEX48215.1| electron transport complex, RnfABCDGE type, C subunit [Jonquetella
           anthropi E3_33 E1]
          Length = 439

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/338 (17%), Positives = 108/338 (31%), Gaps = 50/338 (14%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
            I       I + +K +G+ G GGAGF T +K +       D+   L++NA E EP    
Sbjct: 114 DIESLDPATIRDVIKNTGIVGMGGAGFPTFIKLTPPKDAVVDQ---LIINASECEPYLTC 170

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D  ++  +P  +++G              + +           Q  +D            
Sbjct: 171 DYRLILEDPQPIMDGIRALLVLFPEAKLSVGIEDNKPEAIAKFQVLLD------------ 218

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G+D    +      Y  G E  L+ ++ G+   P      PA+VG       V N  +
Sbjct: 219 --GFDERASLKVLKSKYPQGGEKQLIYAITGRSVPP---GKLPADVG-----AIVCNTYT 268

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272
              +   LR G               ++ ++SG  +  P      + I+  E+++   G 
Sbjct: 269 TYDIGYALRHG----------RTSLKRIITVSGDAIANPGNYRVPLGISVREVLDAAGGF 318

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGA------------IMDYDGLKEMGSGLGTAAV 320
                  L      G S+  L    ++G             +         G  +    +
Sbjct: 319 TAEPMKLLAGGPMMGMSLHSLDVPVVKGTSGLLALTAAALKVRPETRCIRCGRCIEACPM 378

Query: 321 IVMDRSTDIIKAIWRLSVFYKHE--SCGQCTPCREGTG 356
            ++  + D +  +     F      +C +C  C     
Sbjct: 379 GLLPSALDAVVRLQDYKAFQARGGMNCIECGACTYSCP 416


>gi|328474563|gb|EGF45368.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           10329]
          Length = 907

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 119/346 (34%), Gaps = 64/346 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QESADTLIDIIRLAGISGMGGAGFPTAKK----IQSGIARTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     LI+G  I    +      I +        ++L++A                 
Sbjct: 186 LMQEHAEELIQGIEIVEHILKPKLTIIGIEDNKPDAIKALESA----------------A 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 230 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGSIPADIGI-----LVQNVGSLYS 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+++       
Sbjct: 282 IKRAIIDGEPMI----------ERVVTLTGKTFKQPRNVWALLGTPVQALLDEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                 L      +   A  ++  +   I A   
Sbjct: 329 ADKKLQRLIMGGPMMGF--------------TLPHSQVPITKTANCILAPTRHEISAHQY 374

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
                    C +C  C E       ++ + ++  A+  E D L E+
Sbjct: 375 EME------CIRCGQCAEACP--ASLLPQQLQWHAKAEEYDKLEEL 412


>gi|295092330|emb|CBK78437.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           cf. saccharolyticum K10]
          Length = 441

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 107/337 (31%), Gaps = 76/337 (22%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +       +  ++ I   +K +G+ G GGAGF T +K +       D    ++VN  E 
Sbjct: 112 GFGEKRDYTKLSKEEIRGIIKDAGIVGLGGAGFPTHVKLTPKDDAAID---TVIVNGAEC 168

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +M  +P  +I G  +           I +        + +   V +     
Sbjct: 169 EPYLTSDYRLMMEQPEKIIGGLKVILQLFDNAKGVIGIENNKPEAIKKITEMVKD----- 223

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                     +  I V      Y  G E  L+ ++  ++    +    PA+ G       
Sbjct: 224 ----------EPRIEVCPLLTKYPQGGERTLIYAVTKREINSSM---LPADAG-----CV 265

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V+N++++  +   +                  K+ +++G  +  P   E  +  +++ L+
Sbjct: 266 VDNIDTVVSIYNAVCESTPLIR----------KIITVTGDAIANPQNFEVRLGTSYNRLV 315

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           E   G      +    +I GG                           +G A   +    
Sbjct: 316 EAAGG----FKEQPEKMISGGP-------------------------MMGQA---LFSTE 343

Query: 327 TDIIKAIWRLSVFYKHE-------SCGQCTPCREGTG 356
             + K    L+ F K E        C +C  C +   
Sbjct: 344 FPVAKTSSALTTFTKDEVAAQAPSPCIRCGRCVDVCP 380


>gi|297578621|ref|ZP_06940549.1| electron transport complex protein RnfC [Vibrio cholerae RC385]
 gi|297536215|gb|EFH75048.1| electron transport complex protein RnfC [Vibrio cholerae RC385]
          Length = 862

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 104/322 (32%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 130 QLSPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRSEILIINAAECEPYITADDV 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +         +LQ A                 
Sbjct: 186 LMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVTALQQAAQ--------------- 230

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  +++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 231 -DKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 282 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 367

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 368 ELTSSDNEMACIRCGQCAEACP 389


>gi|91202359|emb|CAJ75419.1| conserved hypothetical iron sulfur protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 446

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 107/314 (34%), Gaps = 64/314 (20%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + I   V ++G+ G GGA F T +K +       D    +V+N  E EP    D  +M
Sbjct: 129 TPEEIRQRVFSAGIVGLGGATFPTHVKLTPPKDKTID---TIVMNGAECEPYLTCDHYVM 185

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R+  + ++EG  +    IG   A I +        E              L  N+  G D
Sbjct: 186 RNNANEVLEGLRLVMKCIGCKKAHIGIEANKKDVYE--------------LLKNTLAG-D 230

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I +      Y  G E  L+++L  ++ +P      P   G       V NV +   + 
Sbjct: 231 PSIKIDLLEVKYPQGAEHQLIKALLRREFKPT---QLPMEAG-----AVVINVATAFAIN 282

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             ++           +     ++ +++G+ VN P  +   +     +L+E     +    
Sbjct: 283 NAVKY----------KRPLIERIITVTGNGVNKPQNLRVRIGTPVRDLLEITGTSVGLNK 332

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                +I GG  +                 +    +  GT  ++V+              
Sbjct: 333 -----IIFGGPMMGI-----------AQGSIDNAVTIKGTGGILVLKNQP---------- 366

Query: 338 VFYKHESCGQCTPC 351
             Y+  +C +C  C
Sbjct: 367 -HYESHACIRCGRC 379


>gi|158520323|ref|YP_001528193.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfococcus oleovorans Hxd3]
 gi|158509149|gb|ABW66116.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfococcus oleovorans Hxd3]
          Length = 454

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 114/333 (34%), Gaps = 66/333 (19%)

Query: 27  GHWDNVDKILEKGRDWIINE-VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           G W       +K     I+E + A+G+ G GGA F T +K   +          L++N  
Sbjct: 126 GDW--PKDAADKHDPKAISEAISAAGIVGLGGAAFPTHVK---IMPNDKRPVDALLINGC 180

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  IM      +I G ++A  A+GA    + +     +  E++  A      
Sbjct: 181 ECEPFLTPDYRIMVEAADAVICGALLAGRAVGAKQIVVGIEANKPKAVEAMTRAAQ---- 236

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G  V I V      Y  G E  L+ ++  +K  P      P  VG     
Sbjct: 237 ----------GTAVKIAV--LKTKYPQGSEKHLIMAVMKRKVPP---GKLPLEVG----- 276

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDE 264
             V+NV ++  V   +           R+     ++  ++ G +  P  +   + I++ E
Sbjct: 277 AAVSNVGTVVAVARAVL----------RKKPLTHRVVCVTGGGIVQPKNLLVPIGISYGE 326

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           LIE  CGG+R        ++ GG  +                         G + V V+ 
Sbjct: 327 LIE-FCGGLR---PEAARIVSGGPMMGFAFTDMEMPVT------------KGASGVTVLT 370

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
           R               +  +C +C  C +    
Sbjct: 371 RDD---------VKKAEETACVRCGRCVDVCPL 394


>gi|110799068|ref|YP_696102.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens ATCC 13124]
 gi|110673715|gb|ABG82702.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens ATCC 13124]
          Length = 436

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 104/329 (31%), Gaps = 64/329 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +N+    E     ++  VK  G+ G GGA F   +K +           Y+++NA E EP
Sbjct: 111 ENLKYSSELSLKDVVKLVKDYGIVGLGGATFPCHVKLNV---KEDKEIKYIIINAAECEP 167

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      +I G  I          +I +    +   +  +            
Sbjct: 168 YLTCDHRVMLEYTEEIISGLRILLELFPKALIYIGIEDNKLNAIDKFK------------ 215

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
              S LG D  I V      Y  G E  L+ +L   +         P ++G       V 
Sbjct: 216 ---SILGEDNKIKVMPLKSKYPQGSEKHLIYALTKLQV---PSGKLPLDIG-----CIVF 264

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +I  +   L  G               ++ +++G  +  P  +   +     ++IE 
Sbjct: 265 NVSTIYQLYASLINGLPLT----------ERIITVTGDSIRSPKNLRVKIGTPVKDIIE- 313

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG     +    +I GG  +    A       +            GT+ ++ + +  D
Sbjct: 314 FCGGFINKPNK---IILGGPMMG--TAINSLDLPITK----------GTSGILCLSKVDD 358

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                      +    C +C  C      
Sbjct: 359 -----------FPKSHCIRCGKCLNSCPM 376


>gi|217077952|ref|YP_002335670.1| electron transport complex protein RnfC [Thermosipho africanus
           TCF52B]
 gi|217037807|gb|ACJ76329.1| electron transport complex protein RnfC [Thermosipho africanus
           TCF52B]
          Length = 438

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 115/360 (31%), Gaps = 73/360 (20%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
               L   +  G ++   K      + +++ ++ +G+ G GGA F T +K +       D
Sbjct: 106 DDWEL---LPHGDFEKFSK------EELLDIIQKAGIVGLGGAMFPTHIKLNPPKDKKID 156

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
               L++N  E EP    D  +M  +   ++ G  I    +     +I +    I     
Sbjct: 157 ---TLIINGAECEPYLTIDHRMMLEKHEEILLGIEIVKKILNVKNVYIGIEDNKIDAIN- 212

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
                        L ++   G    + V      Y  G E  L+ ++  K+  PR     
Sbjct: 213 -------------LLNDKWRG---KVTVVPLKTKYPQGAEKQLIYAVT-KRSVPRGG--L 253

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P +VG+      V NV ++  +   +  G            RG  L      +  P    
Sbjct: 254 PLDVGV-----VVQNVSTMYAIKEAVIDGKPLME-------RGLTLTG--EAIKKPGNWW 299

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +      +++    G + G + +  V+ GG  +  +P   +   I+            
Sbjct: 300 IRIGTPISWIVDNLGEGFKEGLEEIK-VLMGGPMMG-IPINNIETPIV-----------K 346

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKR 373
           G   +  +                 K   C +C+ C       ++  +++ L K      
Sbjct: 347 GNNGITSIVPHEQ------------KSTFCIRCSYCVNVCPMGLQPYLLDLLGKKKRYDE 394


>gi|323492348|ref|ZP_08097501.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG
           20546]
 gi|323313395|gb|EGA66506.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG
           20546]
          Length = 728

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 119/348 (34%), Gaps = 67/348 (19%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
               ++       + R  W + +   ++  D +I +++ +G+ G GGAGF T  K     
Sbjct: 107 TCIVIEPDFADTWLERETWPDFE---QRTPDELIEKIRQAGVSGMGGAGFPTAKK----I 159

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           +    R   L++NA E EP    D  +MR     +I+G  I    +      I +     
Sbjct: 160 QSGLARTEILIINAAECEPYITADDVLMREHADEIIKGIEIVEHILKPKLTVIGIEDNKP 219

Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
              ++LQ A +                D DII+      Y  G E  L++ L  K+    
Sbjct: 220 EAVKALQQAAE----------------DKDIIIRVIPTKYPSGGEKQLIKILTNKEV--- 260

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VN 249
                PA++G+      V NV S+  +   +  G +             ++ +++G    
Sbjct: 261 PNGGIPADIGI-----LVQNVGSLQAIKRAVCDGEALV----------ERVVTLTGDTFQ 305

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P  V   +      L+++           L  +I GG  +                   
Sbjct: 306 QPRNVWTLIGTQVQALLDEFGY---QADKRLPRLIMGGPMMGF----------------- 345

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
                L  + V +   S  I+    +     ++E +C +C  C E   
Sbjct: 346 ----TLPHSQVPITKTSNCILAPTRKEISPNQYEMACIRCGQCAEACP 389


>gi|84393396|ref|ZP_00992155.1| electron transport complex protein RnfC [Vibrio splendidus 12B01]
 gi|84376005|gb|EAP92894.1| electron transport complex protein RnfC [Vibrio splendidus 12B01]
          Length = 967

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 70/378 (18%), Positives = 133/378 (35%), Gaps = 71/378 (18%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
              ++   L   + +   + V+    K  D +++ ++ +G+ G GGAGF T  K     +
Sbjct: 108 CVVIKPDGLDTWIDK---NPVEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----Q 160

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
               R   L+VNA E EP    D  +++     +++G  +    +      I +      
Sbjct: 161 SGLGRTDILIVNAAECEPYITSDDKLLQEHAEEVLKGIEVVEHILQPKLTVIGIEDNKPD 220

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
             ++L+ A                  D DI++      Y  G E  L++ L  K+     
Sbjct: 221 AIKALEIA----------------AKDKDIVIRVIPTKYPSGGEKQLIKILTNKEV---P 261

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNY 250
               PA++G+      V NV S+  +   +  G    +          ++ +++G     
Sbjct: 262 AGGIPADIGV-----LVQNVGSLYSIKRAVIDGEPVVN----------RVVTLTGKTFKQ 306

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
           P  V   +     EL+E+           L  +I GG  +                    
Sbjct: 307 PRNVWALLGTPVHELLEEFGY---KADKKLPRLILGGPMMGF------------------ 345

Query: 311 MGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGI 369
               L  A V +   S  I+    R      +E  C +C+ C E       ++ + ++  
Sbjct: 346 ---TLPHANVPITKTSNCILAPTRREISPSTYEMECIRCSACAEACP--ASLLPQQLQWH 400

Query: 370 AQKREIDLLYEVSKNIEG 387
           A+  E+D   E+  NI+ 
Sbjct: 401 AKANELDKCEEL--NIKD 416


>gi|88799939|ref|ZP_01115511.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Reinekea
           sp. MED297]
 gi|88777370|gb|EAR08573.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Reinekea
           sp. MED297]
          Length = 601

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 113/358 (31%), Gaps = 53/358 (14%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
            ++   L D   +  W++      K  + ++  +   G+ G GGAGF T +K     +  
Sbjct: 110 AIEADGLDDWRKQTPWEDWA---SKTHEELLQRIHDGGITGLGGAGFPTDIK----YRNR 162

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
                 L++NA E EP    D  +MR     ++ G  I    +GA    I +        
Sbjct: 163 HAPIDTLLINAAECEPYITADDRLMRERAEDILRGAQICLHLLGARRILIGIEDNKPEAA 222

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            +L+ A +                   I +      Y  G E  L++ + GK+     K 
Sbjct: 223 TALEQAAETLQQ--------------RIELAVVPTKYPSGGEKQLIQLVTGKEV---PKG 265

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
             P+++G+        NV ++  +   +       S                  V+ P  
Sbjct: 266 GLPSDLGI-----VCQNVGTLYQIYRTVVHDEPLISRITT---------VTGAAVSNPGN 311

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM-- 311
            E  +  + + ++      ++     ++     G +VP + A  M+         K+   
Sbjct: 312 YEVLIGTSMETVLNHAGAHLKKADRVIMGGPMMGFAVPDIAAPIMKSTNCLLAPTKKELP 371

Query: 312 GSGLGTAAV-IVMDRSTDIIKAIWRLSVFYKH------------ESCGQCTPCREGTG 356
            +   +  +   +      +  + +   +               E C +C  C     
Sbjct: 372 PAIEDSPCIRCGLCEQACPVDLLPQQMHWASKHRELESAELHSLEDCIECGACAYVCP 429


>gi|227498875|ref|ZP_03929015.1| electron transport complex protein [Acidaminococcus sp. D21]
 gi|226904327|gb|EEH90245.1| electron transport complex protein [Acidaminococcus sp. D21]
          Length = 447

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 127/352 (36%), Gaps = 52/352 (14%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   D I   ++  G  G GGA F T +K+   PK  +     +++N  E EP    D  
Sbjct: 112 EITPDVIRTALREGGSVGLGGATFPTAVKY-APPKEGARPIDTILLNGIECEPFITGDHR 170

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           IM      +I+G      A GA    I +          ++  V                
Sbjct: 171 IMLEWADEMIQGLKYFMMASGAQKGIIGIEDNKPDAIALVKEKVAS-------------- 216

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + +I V   A  Y  G E  L+ +  G+    R     PA+VG+      V+NV +   
Sbjct: 217 -EPNIEVCVCAEKYPEGSEKHLIYAATGRTVPDRG---LPADVGV-----IVDNVGTAVA 267

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
              ++++    Y           ++ +ISG  VN P      +   + + +E   GG++G
Sbjct: 268 CYRMVKKNIPLY----------ERVTTISGDGVNKPGNYICRLGTLYSDAVELAAGGLKG 317

Query: 276 GW-DNLLAVIPGGSSVPCL--PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD---- 328
                +   +  G S P L  P  +  GA++ ++        +  +  +   R  D    
Sbjct: 318 TPGKFISGGMMMGFSTPSLDYPIAKWSGAVLIFNSESPFAQYVEPSPCVHCARCVDACPM 377

Query: 329 ------IIKAIWRL----SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
                 I++A+ R     +  +   +C +C  C       + +++ +  G  
Sbjct: 378 KLEPTEIVQAVKRQNWEEAERFSCHACVECGSCAFVCPAHIPLVQYIRMGKQ 429


>gi|261253563|ref|ZP_05946136.1| electron transport complex protein RnfC [Vibrio orientalis CIP
           102891]
 gi|260936954|gb|EEX92943.1| electron transport complex protein RnfC [Vibrio orientalis CIP
           102891]
          Length = 881

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 125/353 (35%), Gaps = 68/353 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I +++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 130 QRTPDELIEKIRLAGVSGMGGAGFPTAKK----IQSGLARTEILIINAAECEPYITADDM 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  +    +      I +        ++LQ A +               
Sbjct: 186 LMREHADEIIQGIEVVEHILKPKLTVIGIEDNKPEAVKALQHAAEH-------------- 231

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 232 --KDIVIRVIPTKYPSGGEKQLIKILTDKEV---PNGGIPADIGI-----LVQNVGSLYA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G +             ++ +++G     P  V   +      L+++       
Sbjct: 282 IKRAVVDGEALVD----------RIVTLTGDTFKQPRNVWSLLGTPVQSLLDEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  + V +   S  I+    +
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHSQVPITKTSNCILAPTRK 367

Query: 336 LSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
                ++E +C +C  C E       ++ + +   ++  E+D   E+  NI+ 
Sbjct: 368 EISPNQYEMACIRCGQCAEACP--ASLLPQQLLWHSKAEELDKCEEL--NIKD 416


>gi|283796033|ref|ZP_06345186.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium
           sp. M62/1]
 gi|291076241|gb|EFE13605.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium
           sp. M62/1]
          Length = 441

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 108/340 (31%), Gaps = 76/340 (22%)

Query: 25  SRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNA 84
           +   +       +  ++ I   +K +G+ G GGAGF T +K +       D    ++VN 
Sbjct: 109 AAEGFGEKRDYTKLSKEEIRGIIKDAGIVGLGGAGFPTHVKLTPKDDAAID---TVIVNG 165

Query: 85  DESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECY 144
            E EP    D  +M  +P  +I G  +           I +        + +   V +  
Sbjct: 166 AECEPYLTSDYRLMMEQPEKIIGGLKVILQLFDNAKGVIGIENNKPEAIKKITEMVKD-- 223

Query: 145 ASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGC 204
                        +  I V      Y  G E  L+ ++  ++    +    PA+ G    
Sbjct: 224 -------------EPRIEVCPLLTKYPQGGERTLIYAVTKREINSSM---LPADAG---- 263

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFD 263
              V+N++++  +   +                  K+ +++G  +  P   E  +  +++
Sbjct: 264 -CVVDNIDTVVSIYNAVCESTPLIR----------KIITVTGDAIANPQNFEVRLGTSYN 312

Query: 264 ELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
            L+E   G      +    +I GG                           +G A   + 
Sbjct: 313 RLVEAAGG----FKEQPEKMISGGP-------------------------MMGQA---LF 340

Query: 324 DRSTDIIKAIWRLSVFYKHE-------SCGQCTPCREGTG 356
                + K    L+ F K E        C +C  C +   
Sbjct: 341 STDFPVAKTSSALTTFTKDEVAAQEPTPCIRCGRCVDVCP 380


>gi|219854503|ref|YP_002471625.1| hypothetical protein CKR_1160 [Clostridium kluyveri NBRC 12016]
 gi|219568227|dbj|BAH06211.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 458

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 99/321 (30%), Gaps = 61/321 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     I++ ++ +G+ G GGA F + +K S        +  + ++N  E EP    D  
Sbjct: 124 DLSDKDIMSIIREAGIVGMGGATFPSHVKLS---PPADKKVEFFILNGAECEPYLTSDYR 180

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M      ++ G  I    + A   F+ +        E ++ A +              G
Sbjct: 181 SMLEYTDRIVSGVKIIMKILKAEQGFVGIEDNKKDAIEVMEKAFE------------GTG 228

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + V      Y  G E  L++ L G++         P +VG       V NV +   
Sbjct: 229 ----VQVVALPTKYPQGAEKMLIKVLTGREV---PSGRLPMDVG-----AVVQNVGTCIA 276

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   + +G                     G +  P  +   +  TF   +   CGG +  
Sbjct: 277 VSDAVEKGIPLIQRVTTL---------SGGALKEPKNLLLRIGTTFKYAV-DLCGGFKET 326

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
               + V+ GG  +    A       +            G + ++ +  S          
Sbjct: 327 P---VKVVMGGPMMGF--AQSNLEVPILK----------GVSGILSLSESD--------- 362

Query: 337 SVFYKHESCGQCTPCREGTGW 357
           +      +C +C  C      
Sbjct: 363 ANTGTETACIRCGRCFNACPM 383


>gi|153953889|ref|YP_001394654.1| hypothetical protein CKL_1264 [Clostridium kluyveri DSM 555]
 gi|146346770|gb|EDK33306.1| RnfC [Clostridium kluyveri DSM 555]
          Length = 452

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 99/321 (30%), Gaps = 61/321 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     I++ ++ +G+ G GGA F + +K S        +  + ++N  E EP    D  
Sbjct: 118 DLSDKDIMSIIREAGIVGMGGATFPSHVKLS---PPADKKVEFFILNGAECEPYLTSDYR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M      ++ G  I    + A   F+ +        E ++ A +              G
Sbjct: 175 SMLEYTDRIVSGVKIIMKILKAEQGFVGIEDNKKDAIEVMEKAFE------------GTG 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + V      Y  G E  L++ L G++         P +VG       V NV +   
Sbjct: 223 ----VQVVALPTKYPQGAEKMLIKVLTGREV---PSGRLPMDVG-----AVVQNVGTCIA 270

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   + +G                     G +  P  +   +  TF   +   CGG +  
Sbjct: 271 VSDAVEKGIPLIQRVTTL---------SGGALKEPKNLLLRIGTTFKYAV-DLCGGFKET 320

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
               + V+ GG  +    A       +            G + ++ +  S          
Sbjct: 321 P---VKVVMGGPMMGF--AQSNLEVPILK----------GVSGILSLSESD--------- 356

Query: 337 SVFYKHESCGQCTPCREGTGW 357
           +      +C +C  C      
Sbjct: 357 ANTGTETACIRCGRCFNACPM 377


>gi|320537373|ref|ZP_08037328.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           phagedenis F0421]
 gi|320145838|gb|EFW37499.1| electron transport complex, RnfABCDGE type, C subunit [Treponema
           phagedenis F0421]
          Length = 473

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 96/314 (30%), Gaps = 53/314 (16%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            ++  I  ++  G+ G GGA F T +K S  P    D   Y++ N  E EP    D   M
Sbjct: 119 TKEEAIARIRDCGICGMGGAAFPTHIKLSPPPNTKID---YVLANGAECEPYLTTDAATM 175

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
            H    +++G  I    + A    I +          L+ A+ +                
Sbjct: 176 YHSADDIVDGLSIVMHILSASKGIIVLEDNKTDLVPFLEKALAKLK------DRPDTSGS 229

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            DI +      Y  G E  L+E +   +  P    PF   +G       + NV ++  V 
Sbjct: 230 FDISIQLCKTKYPQGGEKNLVE-VATGRQIPSGGLPFS--IG-----CAIQNVGTLKAVS 281

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              R G               + F++SG     P      +     +LI           
Sbjct: 282 EAFRLGKPLID----------RPFTVSGDACKKPFNGVAPIGTCVGDLIPD----PIELD 327

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             ++ +I GG  +             +            T+ ++ +      +       
Sbjct: 328 TGIIKIISGGPMMGMSMKNADFPIQKN------------TSGILFLTEKEASLD------ 369

Query: 338 VFYKHESCGQCTPC 351
              +   C +C  C
Sbjct: 370 ---QESPCIRCGRC 380


>gi|87118385|ref|ZP_01074284.1| electron transport complex protein RnfC [Marinomonas sp. MED121]
 gi|86166019|gb|EAQ67285.1| electron transport complex protein RnfC [Marinomonas sp. MED121]
          Length = 1251

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 110/327 (33%), Gaps = 62/327 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           ++  LE     +++ +   G+ G GGAGF T +K   +        H L++NA E EP  
Sbjct: 119 LENWLELPTADVVSHLAEMGIVGMGGAGFPTQVK---LAGATKHTIHELIINAAECEPYI 175

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  ++R +   LI+G  +    I A    I +        + L   ++   A      
Sbjct: 176 TADDMLIREKTDALIKGIQVLQTLIEAQRTIIGIEDNKQTAIKLLTDEIERTKA------ 229

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                   +I V      Y  G E  L++ + GK+         PA++G+        NV
Sbjct: 230 --------NIDVVVLPTKYPSGGEKQLIQLITGKEV---PSGQLPADIGV-----MCQNV 273

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC-TVEESMSITFDELIEKHC 270
            +   +   + +G              +++ +++G        VE  +      L+E   
Sbjct: 274 GTCVAIYDAIYQG----------KPLISRITTLTGDAMGQAQNVEVLLGTPISHLLEYA- 322

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
                   +L  ++ GG  +    +                        V V+  S  I+
Sbjct: 323 ---EFNPQHLERLVMGGPMMGFTISDNQ---------------------VPVVKTSNCIL 358

Query: 331 KA-IWRLSVFYKHESCGQCTPCREGTG 356
            A    L      ++C +C  C +   
Sbjct: 359 AASTKELPTPAPEQACIRCGMCEQACP 385


>gi|312883749|ref|ZP_07743469.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368599|gb|EFP96131.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 645

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 109/322 (33%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E+  + II +++  G+ G GGAGF T  K     +    +   L++NA E EP    D  
Sbjct: 130 ERSPEEIIEKIRMLGISGMGGAGFPTAKK----VQSGLAKTEVLIINAAECEPYITADDM 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     LI+G  I    +      I +         +L+ A +               
Sbjct: 186 LMRTYADELIKGIEIVEHILKPKLTVIGIEDNKPEAIRALEIAAE--------------- 230

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D DII+      Y  G E  L++ L   +         PA++G+      V NV S+  
Sbjct: 231 -DKDIIIRVIPTKYPSGGEKQLIKILTNLEVPSNG---IPADIGI-----LVQNVGSLYA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G+    P  V   +      L+++       
Sbjct: 282 IKRAVINGEPLV----------ERIVTLTGNTFKQPRNVWALLGTPVQSLLDEFGYTADK 331

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L   I GG  +                        L  + V +   S  I+    R
Sbjct: 332 KLPRL---IMGGPMMGF---------------------TLPHSQVPITKTSNCILAPTRR 367

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                ++E +C +C+ C +   
Sbjct: 368 EISSDQNEMACIRCSACADACP 389


>gi|325829764|ref|ZP_08163222.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella
           sp. HGA1]
 gi|325487931|gb|EGC90368.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella
           sp. HGA1]
          Length = 442

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 126/383 (32%), Gaps = 66/383 (17%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +   +  +K SGL G GGAGF T +K +       D     VVNA E EP    D   
Sbjct: 122 TDQASFLAAIKKSGLVGLGGAGFPTDIKLAPPNLEEIDLY---VVNATECEPYLSTDYRE 178

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M   P  ++ G       +G   A I +     +  E ++           L  +     
Sbjct: 179 MMESPDDVLFGIRETCRHLGIPNAMICIESNKPKAIEIMRE----------LTKD----- 223

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  I V      Y  G E  L+ +  G +  PR K     +VG+      +NNV ++A +
Sbjct: 224 DSSIQVKSLPSRYPQGAENVLVHNATG-RVVPRGK--RQTDVGV-----MLNNVTTMASI 275

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              L+ G               + F++SG  +  PC     +     +++E         
Sbjct: 276 GRFLKTGMPLVK----------RRFTVSGDAIARPCNANIIIGTRLRDVMEFAGLTKEPH 325

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 V+ GG  +            MDY  +++         V+V  +           
Sbjct: 326 K-----VVLGGPMMG------NAQIDMDYPVIRQ------NNGVLVFSKDA--------- 359

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV-SKNIEGRTICALGD 395
                  +C +C  C       +  +   +K     ++   L ++ +    G   C+   
Sbjct: 360 MEQPATTACIRCGRCTNSCPMQLSPIA--IKKAYTVQDAKKLDDLMADLCMGCGTCSFVC 417

Query: 396 AAAWPIQGLIKNFRPLIEERIDQ 418
            A  P+    K  R  +   + +
Sbjct: 418 PAKQPLAQTSKLARDFMRAEMAR 440


>gi|90408374|ref|ZP_01216537.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3]
 gi|90310537|gb|EAS38659.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3]
          Length = 839

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 140/378 (37%), Gaps = 72/378 (19%)

Query: 22  DSMSRGHWDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           D++ R  + N++K L   ++   ++I+E++ +G+ G GGAGF T +K         +   
Sbjct: 121 DALDR--YINIEKPLPYWQQSSHFLIDEIQKAGIVGLGGAGFPTHLKLK-----GHEATQ 173

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D  +M+   + +I G  +    +      I +     +  E+L  
Sbjct: 174 LLLINAAECEPYISADDRLMQEHANEIIAGINVLQHILNPKLTIIAIEDNKPQAIEALTE 233

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A++                   II+      Y  G E  L+E + GK+         P +
Sbjct: 234 ALNTTKNH--------------IIIRKIPTLYPSGSEKQLIEIITGKQTPI---GRHPTD 276

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           +G+      + N+ ++  +   L  G              +++ +++G  +     V   
Sbjct: 277 LGI-----VMQNIGTVFAIKEALIDG----------KPLTSRIVTLTGDAIAKKGNVSVR 321

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +      L++K+             VI GG  +                 ++++ S +  
Sbjct: 322 IGTPIQYLLDKY----HFNPSADQKVIIGGPMMGF--------------TIQDLQSPITK 363

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREI 375
               ++  +   +          + ++C +C+ C +      M + +    K    K+ +
Sbjct: 364 KCNCILAPTIQEMPEAE------QEQACIRCSYCADACPVELMPQQLLWYAKNQDHKK-L 416

Query: 376 DLLYEVSKNIEGRTICAL 393
           +  Y +S  IE   ICA 
Sbjct: 417 EA-YNLSSCIECG-ICAF 432


>gi|241762604|ref|ZP_04760677.1| electron transport complex, RnfABCDGE type, C subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|260753652|ref|YP_003226545.1| electron transport complex, RnfABCDGE type, C subunit [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|241372799|gb|EER62503.1| electron transport complex, RnfABCDGE type, C subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|258553015|gb|ACV75961.1| electron transport complex, RnfABCDGE type, C subunit [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 487

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 99/327 (30%), Gaps = 60/327 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +            I   V  +G+ G GGA F   +K     +        +V+N  E EP
Sbjct: 114 EAYSDPFAVDPQLIRERVAWAGVVGLGGAAFPAAVKLE---QSSQKPIKMVVLNGAECEP 170

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     +I G  + + A+GA    I +          ++       A    
Sbjct: 171 YLTGDDRVMQEYADEVISGGRLIAHAVGAPKVVIGIERNKPEAIAIMKK---TAEAYD-- 225

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     ++ +      Y  G    L+++L G +   R      A+VG+      V 
Sbjct: 226 ----------NVEIADLPAQYPVGSARHLVQALTGLEISART---RIADVGV-----LVQ 267

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NV +   V    R G    S     +  G          N P T++  +      LI   
Sbjct: 268 NVGTARAVWRSARYGEPLISRIVTVSGGGM---------NDPKTLDAPIGSPVKALI-DF 317

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
           CGG+    +    ++ GG  +            +            GTA ++ +      
Sbjct: 318 CGGM---NEKAEQIVTGGPLMGVGLPNI--DVPV----------IKGTAGILALTSEE-- 360

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTG 356
                        E+C +C  C +   
Sbjct: 361 -------MDHRPTEACLRCGRCVDVCP 380


>gi|237809075|ref|YP_002893515.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas
           auensis DSM 9187]
 gi|237501336|gb|ACQ93929.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas
           auensis DSM 9187]
          Length = 483

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 63/328 (19%), Positives = 114/328 (34%), Gaps = 62/328 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
              R+ +IN V+ +G+ G GGA F T  K         D    L++N  E EP    D  
Sbjct: 112 TLSREEMINLVEEAGIVGMGGAMFPTSDKLRLSMHYLID---TLIINGSECEPYLTCDDR 168

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+ +   ++ G         A   FI +         +++ A+ +              
Sbjct: 169 LMQEQGDRIMGGIRYLQQITLADKVFIGIEENKPEAIAAME-ALCKAEK----------- 216

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              ++ V      Y  G E  L+E++ G++          A+VG+      V NV +   
Sbjct: 217 ---NMQVVGLPALYPMGSEKQLIEAVTGRQV---PSGKLSADVGV-----LVQNVATSIA 265

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   LR G               ++ +ISG  V  P  V   + +   E++   CGG++ 
Sbjct: 266 IFEALRFG----------RPLTHRVITISGDAVEVPSNVMAPVGMPISEIV-AQCGGLKS 314

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  ++ GG          M  AI D       G+   +  +++ +      KA   
Sbjct: 315 TP---ARIVLGGP--------MMGRAITDIHAPVTKGT---SGVLLLTEDELPNPKA--- 357

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVME 363
                   +C +C  C       +  ++
Sbjct: 358 -------SACVRCGRCIGACPMSLTPLD 378


>gi|238916865|ref|YP_002930382.1| electron transport complex protein RnfC [Eubacterium eligens ATCC
           27750]
 gi|238872225|gb|ACR71935.1| electron transport complex protein RnfC [Eubacterium eligens ATCC
           27750]
          Length = 439

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 61/324 (18%), Positives = 109/324 (33%), Gaps = 62/324 (19%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K  +  +D I+  +KA+G+ G GGAGF T +K S       D   Y++VN  E EP    
Sbjct: 115 KFEDLTKDVILERIKAAGVVGMGGAGFPTNVKLSPKNPEAID---YIIVNGAECEPYLTS 171

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D   +  E   ++ G  IA          I +          +Q A              
Sbjct: 172 DYRRLLEESDKVVMGLKIALKIFDHAKGIIGIEDNKPEAIRIMQEA-------------- 217

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
               + DI V      Y  G E +L+ +  G+     +    PA+ G       V+NV++
Sbjct: 218 -TASEPDIEVKPLKTKYPQGGERSLIYATTGRAINSSM---LPADAG-----CIVHNVDT 268

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGG 272
           I  +   +  G               ++ +++G  V  P      +   + +L++   G 
Sbjct: 269 IFSIYLSVIEG----------KPLTKRICTVTGDGVKEPGNFYVWLGTNYRQLLDAAGGP 318

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           +          I GG  +    A       +            G+++++V  +       
Sbjct: 319 VGEPEK----YISGGPMMGF--AMYSLDVPV----------VKGSSSLLVFQKD------ 356

Query: 333 IWRLSVFYKHESCGQCTPCREGTG 356
              +       +C +C  C E   
Sbjct: 357 ---IVSKTTSSACIRCGKCGEACP 377


>gi|187934280|ref|YP_001885943.1| ethanolamine utilization Fe-S center protein eut [Clostridium
           botulinum B str. Eklund 17B]
 gi|187722433|gb|ACD23654.1| ethanolamine utilization Fe-S center protein eut [Clostridium
           botulinum B str. Eklund 17B]
          Length = 441

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 118/346 (34%), Gaps = 75/346 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +        +  Y++VN  E EP    D+ +M  +   L+           A 
Sbjct: 22  FPTHVKLNA-------KVEYVIVNGAECEPLLKVDQQLMAEKSSELLYALNKIVEQTEAT 74

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++G++    ++L               N KLG    + +      Y  G+E   +
Sbjct: 75  KGVIALKGKYKSAMKNL---------------NEKLGEYPKLELFELGNFYPAGDEQITV 119

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             +  K+  P  +   P NVG+      V NVE++  V   L                  
Sbjct: 120 YEVT-KRVVP--EGGIPLNVGV-----IVINVETLLNVYNALE-----------GKPVTE 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +I+G V  P TV+  + I+  + +E   G +   ++    +I GG  +  L     R
Sbjct: 161 KFLTITGEVKNPITVKVPIGISVRQALELAGGTLIDEFE----IIDGGPMMGKLIEDINR 216

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR---LSVFYKHESCGQCTPCRE--- 353
               +            T  +IV+ +S +I+ +  R     +     +C  C+ C E   
Sbjct: 217 PIKKN------------TKGLIVISKSHNIVVSKKRNIQSMLKQARAACCHCSMCTEVCP 264

Query: 354 ----GTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICAL 393
               G       M R+    G   K  +     +       + C L
Sbjct: 265 RHLLGHKLEPDKMMRIASYGGTCSKEILPTASFLC------SECGL 304


>gi|332993969|gb|AEF04024.1| electron transport complex protein RnfC [Alteromonas sp. SN2]
          Length = 866

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 108/331 (32%), Gaps = 69/331 (20%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  VDK      + I++ +  +G+ G GGAGF T +K        S    +LV+N  E 
Sbjct: 132 DYTGVDK------NTIVDAICQAGISGMGGAGFPTHIK-----TATSKPVEFLVLNGVEC 180

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR     + +G  I +  I      I +        ++L  A  +  A  
Sbjct: 181 EPYITADDRLMREHAWQIRQGLDILAHIIEPKAIVIAIEDNKPEAIQALNIACQDKDAY- 239

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                          V      Y  G E  L++ + G +  PR     PA++G+      
Sbjct: 240 --------------RVVPIETKYPAGGEKQLIQVITG-REVPRNG--LPADIGV-----M 277

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           + NV +   +   +  G               ++ +++G  V  P      +      L+
Sbjct: 278 MFNVGTCFAIADAILHG----------KPLIERIVTVTGDAVAKPANFRALLGTPVKHLL 327

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           E+     +        VI GG  +                        L  A + V+  +
Sbjct: 328 EEASYQAKKQTSPK--VIMGGPMMGF---------------------ALADATIPVVKTT 364

Query: 327 TD-IIKAIWRLSVFYKHESCGQCTPCREGTG 356
              ++ +   L        C +C+ C +   
Sbjct: 365 NCLLVPSKKELVDDNAERPCIRCSACADACP 395


>gi|269791957|ref|YP_003316861.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099592|gb|ACZ18579.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 445

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 110/323 (34%), Gaps = 61/323 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   D I   ++ +G+ G GGA F T +K +  P    D    +++N  E EP    D  
Sbjct: 119 DLPADEIRRIIREAGIVGMGGACFPTAVKLTPPPDKKVDH---VIINGAECEPYLTCDDR 175

Query: 97  IMRHEPHTLIEGCVIASFAI-GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
           +MR     ++ G  IA           + +     +  E+++  +D              
Sbjct: 176 LMRERGDRVLLGLQIALKLFPQGVKGVVALEDNKPKAIEAMRGYLDRLAIQ--------- 226

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               ++ V      Y  G E  L+ ++ G++         PA+VG       + NV +  
Sbjct: 227 ----NVTVQPVRTKYPQGAEKMLIYAVTGREV---PAGGLPADVG-----CIILNVRTAY 274

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            +   +                  ++ ++SG  +  P  +   + ++  ELIE  CGG  
Sbjct: 275 AIWDAVVNRMPVID----------RIVTVSGDAIKEPKNLGVRLGMSVRELIE-ACGGFS 323

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                 L VI GG  +    A       +            GT+ ++          A+ 
Sbjct: 324 VEP---LKVIMGGPMMGV--ALSDLNVPV----------VKGTSGILAFSE------ALA 362

Query: 335 RLSVFYKHESCGQCTPCREGTGW 357
           RL      E+C +C  C      
Sbjct: 363 RLGE---EENCIRCGKCVSTCPM 382


>gi|210623717|ref|ZP_03294001.1| hypothetical protein CLOHIR_01952 [Clostridium hiranonis DSM 13275]
 gi|210153405|gb|EEA84411.1| hypothetical protein CLOHIR_01952 [Clostridium hiranonis DSM 13275]
          Length = 447

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 71/384 (18%), Positives = 135/384 (35%), Gaps = 69/384 (17%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K+ +  ++ I+  +K +G+ G GGA F T +K   +         ++++N  E EP    
Sbjct: 115 KLEDLSKEEIVEIIKEAGIVGMGGATFPTHVK---VCPPPGSTAEFVILNGAECEPYLTA 171

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D  +M  +P  ++ GC      +  +  FI +        E++Q              N 
Sbjct: 172 DHRLMLEQPEKVVLGCRALMKVLDVNKGFIGIEENKPDAIEAVQ--------------NV 217

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
              +  +I V      Y  G E  L+ +  G +  P    P  A          V+NV +
Sbjct: 218 AKDFP-EIEVVTLKVKYPQGAEKQLIYACTG-REVPSGGLPIAAGA-------VVDNVGT 268

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
            A +   +  G              T +      +  P  +   +    +E+I   CGG 
Sbjct: 269 AAAIADAITTGMPLVERI-------TTVTGPC--IAEPKNLVTKIGTRVNEII-DQCGGY 318

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
           +    NL  VI GG  +                   E+ +  G++ ++++          
Sbjct: 319 K-EGTNLGKVIMGGPMMGF------------TQWHTEISTNKGSSGILLLTEEE------ 359

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN--IEGRT-- 389
              S   + ++C +C  C +     ++ +  L+   + K + D   E +    IE  +  
Sbjct: 360 ---SRTPEMQNCIRCGRCTDVCPSFLQPL--LISAYSMKNDFDKAEEFNAMDCIECGSCS 414

Query: 390 -ICALGDAAAWPIQGLIKNFRPLI 412
            IC     A  P+   I+  +  I
Sbjct: 415 FICP----ARRPLVQTIRTAKREI 434


>gi|156975237|ref|YP_001446144.1| electron transport complex protein RnfC [Vibrio harveyi ATCC
           BAA-1116]
 gi|156526831|gb|ABU71917.1| hypothetical protein VIBHAR_02966 [Vibrio harveyi ATCC BAA-1116]
          Length = 912

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 112/323 (34%), Gaps = 66/323 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QESADALIDVIRLAGISGMGGAGFPTAKK----IQSGIARTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     LI+G  I    +      I +        ++L+ A                 
Sbjct: 186 LMQEHADELIQGIEIVEHILKPKLTIIGIEDNKPAAIKALEQA----------------A 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 230 MNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGAIPADIGI-----LVQNVGSLYS 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G    +          ++ +++G     P  V   +      L+++       
Sbjct: 282 IKRAVIDGEPVVN----------RIVTLTGKTFKQPRNVWTLLGTPVQALLDEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+    R
Sbjct: 329 ADKKLQRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPKRR 367

Query: 336 --LSVFYKHESCGQCTPCREGTG 356
              S  Y+ E C +C+ C E   
Sbjct: 368 EIASDQYEME-CIRCSQCAEACP 389


>gi|325265309|ref|ZP_08132034.1| PduS protein [Clostridium sp. D5]
 gi|324029488|gb|EGB90778.1| PduS protein [Clostridium sp. D5]
          Length = 449

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 121/319 (37%), Gaps = 54/319 (16%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  VK +G+ G GGAGF T +K +   +       Y +VNA E EP    D+ + R   
Sbjct: 3   LIETVKDAGIVGAGGAGFPTHVKLNTKAE-------YFIVNAAECEPLIETDKYLCRTFA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             LI+G +  +  + A  ++I ++ ++  E  +L+ A+++  A              DI 
Sbjct: 56  DELIKGVMYIAGHLEAKKSYIALKAKYKAEIAALKEAIEKNNA--------------DIE 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +      Y  G+E  +++ + G+    R     P  VG       V+NV ++  V   L 
Sbjct: 102 IFEMRTFYPAGDEQIIVQQVTGRTVPERG---IPIEVG-----AVVDNVGTVLAVYRALT 153

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
            G               K  S+ G V  P  ++  +  +    IE              A
Sbjct: 154 DGGKVTD----------KYLSVVGEVKEPIMLKVPIGTSVRTCIE--------------A 189

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL-GTAAVIVMDRSTDIIKAIWRLSVFYK 341
             P  S    +  G M G +   D + +       T  +IV+ +   +I+         K
Sbjct: 190 AQPVISDYAIILGGPMMGKVFSDDSVIDQQVVTKTTGNIIVLPKDHYLIRRTQVSIQRIK 249

Query: 342 HESCGQCTPCREGTGWMMR 360
           H++   C  CR  T    R
Sbjct: 250 HQARSACIQCRMCTDLCPR 268


>gi|188585708|ref|YP_001917253.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350395|gb|ACB84665.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 441

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 106/330 (32%), Gaps = 64/330 (19%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           D       D+ D I     D I  +V A+G+ G GGA F T +K S   +   D    ++
Sbjct: 107 DYEESEGLDSPDNI---TADEIKEKVNAAGIIGMGGAAFPTHIKISPDKEKPID---TVI 160

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
           +N  E EP    D  +M      ++ G      A+      I +     +  E +Q  V 
Sbjct: 161 LNGAECEPYLTTDYRMMLEAEDYVLFGLRAIMKAVNCENGVIAIENNKPQAIEKMQNIVA 220

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
           +               D  + V      Y  G E  L++++ G++         P +VG 
Sbjct: 221 D---------------DDRLQVMIFESKYPQGAEKQLIKTVTGREV---PSGGLPMDVG- 261

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
                 VNNV +   +   ++     Y         G         +N P      +   
Sbjct: 262 ----CIVNNVGTAVAIAEAIKLNKPSYERVMTVTGPG---------INRPGNFLVRIGTL 308

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA-- 319
              +I +  G      +N   VI GG  +       +    +++  +K     L      
Sbjct: 309 ASHIISECGG----AKENTKKVIMGGPMMG------LSQPTVEFPVIKGTSGILLLTGSE 358

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349
           V V +    I              +CG+C 
Sbjct: 359 VKVFEEKPCI--------------NCGRCV 374


>gi|291287819|ref|YP_003504635.1| electron transport complex, RnfABCDGE type, C subunit
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884979|gb|ADD68679.1| electron transport complex, RnfABCDGE type, C subunit
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 436

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 109/332 (32%), Gaps = 64/332 (19%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           V  +G+ G GGA F + +K S            L++N  E EP    D  IM      +I
Sbjct: 123 VMFAGIAGMGGATFPSHVKLS-----PPKDVDTLLINGAECEPYLTCDHRIMLERTEDVI 177

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
           +G  +    +      I +        E                  +K   + +  +   
Sbjct: 178 KGASLIRDNLKLKKLIIGIEKNKPDAIEEF----------------AKYEQEYNFELVEL 221

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
              Y  G E  L+++   +      +   P  VG+      V+NV + A +         
Sbjct: 222 EVKYPQGGEKQLIKACLNRVV---PEGQLPMEVGV-----IVHNVGTCAAI--------- 264

Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
            Y    R+     ++ +++G V  P  +   +     +LIE HCGG  G       +I G
Sbjct: 265 -YDALERQKPLFERMVTVTGAVKEPKNLIVRVGTPISKLIE-HCGGFTGKP---KKIIMG 319

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G  +    A       +            GT+ ++V     D+          YK   CG
Sbjct: 320 GPMMGL--AVTSLDTPV----------MKGTSGILVYRDE-DMPDLTQ-----YKCMRCG 361

Query: 347 QCT-PCREGTGWMMRVMERLVKGIAQKREIDL 377
           +C   C  G   +   M+R V     +   D 
Sbjct: 362 RCIEACPMGL--VPSAMDRFVVKEMYESLADW 391


>gi|329898085|ref|ZP_08272294.1| Electron transport complex protein RnfC [gamma proteobacterium
           IMCC3088]
 gi|328920957|gb|EGG28382.1| Electron transport complex protein RnfC [gamma proteobacterium
           IMCC3088]
          Length = 574

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 119/367 (32%), Gaps = 65/367 (17%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R  ++  ++  G+ G GGAGF +        K+ SD    L++N  E EP    D  +MR
Sbjct: 124 RTKLLGLIRDHGIAGLGGAGFPSA------YKLNSDHIDTLIINGVECEPYITADDRLMR 177

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                L +G  I     GA    I +        E++++A +                  
Sbjct: 178 ERSDLLEQGINILQHITGAQRVLIGIEDNKPEATEAVRSACEHR---------------- 221

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           D  V      Y  G E  L+E L GK+  PR     PA++G+        NV +   +  
Sbjct: 222 DWRVISVPTMYPSGGEKQLIELLTGKQ-VPRDG--IPADLGI-----VCQNVATATAIAQ 273

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            +  G    S              I+G        E  +    + L++ H G      + 
Sbjct: 274 AVLHGQPLISRITTLTGE-----CITGK----GNYEVRLGTPVEHLLQ-HGG---YTREQ 320

Query: 280 LLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAV------IVMDRSTDIIKA 332
              VI GG  +   LP  ++         L    + L +                     
Sbjct: 321 SQKVIMGGPLMGFTLPDLRVPIVKTTNCILAPSKTELASDTQSQPCIRCGHCADVCPASL 380

Query: 333 IWRLSVFYKH------------ESCGQCTPCREGTGWMMRVME--RLVKGIAQKREIDLL 378
           + +   +Y                C +C  C       + +++  R  K   +++ I+  
Sbjct: 381 LPQQLYWYAKSQNHEQLDAHNLADCIECGACAYVCPSALPLVQFYRAAKAEIKEKSIEQR 440

Query: 379 Y-EVSKN 384
             +++K 
Sbjct: 441 QADIAKT 447


>gi|260597797|ref|YP_003210368.1| electron transport complex protein RnfC [Cronobacter turicensis
           z3032]
 gi|260216974|emb|CBA30618.1| Electron transport complex protein rnfC [Cronobacter turicensis
           z3032]
          Length = 849

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 128/403 (31%), Gaps = 79/403 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +      + R+ +I  +   G+ G GGAGF TG K     +   
Sbjct: 110 IDADGEDRWIPRDGWSDYSC---RSREALIERIHQFGVAGLGGAGFPTGTKL----QGGG 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     +I+G  I +  +      I +     +   
Sbjct: 163 DKIETLIINAAECEPYITADDRLMQDCAAQIIDGVRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            ++A +                 +  I +      Y  G    L + L GK+        
Sbjct: 223 MMRAVLHG---------------EHKIRLRVIPTKYPSGGAKQLTQILTGKQV---PHGG 264

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCT 253
             +++G+      + NV +   V   +  G               ++ +++G  V  P  
Sbjct: 265 RSSDIGV-----LMQNVGTAFAVKRAIIDGEPLT----------ERVVTLTGEAVGRPGN 309

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           V   +      L+E           +   VI GG  +                      +
Sbjct: 310 VWARIGTPVRHLLEHAG----FIPTSEQLVIMGGPLMGF--------------------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQ 371
             G    +V   +  +  +   +    + + C +C+ C +      + + +     G   
Sbjct: 346 LPGLDVPVVKITNCLLAPSATEMGAPQEEQHCIRCSACADACPADLLPQQLYWFSVGQQH 405

Query: 372 KREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    + ++  IE    C    A A+       L++ FR  
Sbjct: 406 --DKATAHNLADCIE----CG---ACAYVCPSNIPLVQYFRQE 439


>gi|257094523|ref|YP_003168164.1| electron transport complex protein RnfC [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047047|gb|ACV36235.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 583

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 89/296 (30%), Gaps = 40/296 (13%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +   ++ +G+ G GGA F +  K +    V  +    LV+N  E EP    D  
Sbjct: 121 SLPPERVRELLRDAGVVGLGGAAFPSHAKLTAARSVPMED---LVINGAECEPYMTCDDM 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +GA    I +         ++QAAV                
Sbjct: 178 LMRERAEEIVRGIAIFRDLLGARRVLIGIEDNKPEAVAAMQAAVCGLAE----------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              D  V      Y  G    L+  L GK+     +    A            NV ++  
Sbjct: 227 ---DYEVVAVPTRYPAGGAKQLIRVLTGKEVPASKRSTELAVQ--------CFNVATVYT 275

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
               L  G    S          ++ +++G+V  P   E  +     +L+      +   
Sbjct: 276 AYRALAHGEPVVS----------RIVTLTGNVERPRNWEVRLGTPLGDLV-----ALGRP 320

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
             +    + GG  +           +   + +         A+   M        A
Sbjct: 321 KADTSRYLMGGPMMGFALPSLEAPVVKATNCIIAAAPTTFPASPPEMPCIRCGACA 376


>gi|293390123|ref|ZP_06634457.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950657|gb|EFE00776.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 790

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 59/408 (14%), Positives = 122/408 (29%), Gaps = 81/408 (19%)

Query: 11  NLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
               ++   L     +     ++  L +  + +I ++  +G+ G GGA F T  K     
Sbjct: 107 TCVHIKADGLDKWREQ---TPLEDFLNQTPEQLIEKIYQAGIAGLGGAVFPTAAK----I 159

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
                +   L++N  E EP    D  +MR     +IEG  I  + +      I V     
Sbjct: 160 HSAEKQVKLLIINGAECEPYITCDDRLMRDYADEIIEGVRILRYILRPEKVVIAVEDNKP 219

Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
           +  +SL+ A+                   DI +      Y  G    L++ L G +    
Sbjct: 220 KAVKSLERALHGAN---------------DIEIRVIPTKYPSGAAKQLIQVLTGMEV--- 261

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VN 249
                 + +G+      + N+ +   +   +                  ++ +++G  + 
Sbjct: 262 PSGQRSSGIGV-----LMQNIGTAFAIKRAVMDDEPLI----------ERVVTLTGDKIV 306

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
                          L+ +        +D+   V  GG  +  +       A M      
Sbjct: 307 DKGNYWARFGTPIYHLLRETG----YQYDDRFPVFMGGPMMGFILPD--LNAPMTKVT-- 358

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG--WMMRVMERLV 366
                              ++          + E +C +C+ C +      M + +    
Sbjct: 359 -----------------NCLLAPDHFEYAPPEEEKNCIRCSACSDACPVKLMPQQLYWFA 401

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
           +    ++  +  Y +   IE    C      A+       LI+ FR  
Sbjct: 402 RSEDHEKSEE--YSLKDCIE----CG---VCAYVCPSHIPLIQYFRRE 440


>gi|149190373|ref|ZP_01868645.1| electron transport complex protein RnfC [Vibrio shilonii AK1]
 gi|148835752|gb|EDL52717.1| electron transport complex protein RnfC [Vibrio shilonii AK1]
          Length = 934

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/340 (18%), Positives = 117/340 (34%), Gaps = 67/340 (19%)

Query: 22  DSMSRGHWDNV---DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPH 78
           ++  +  W ++   +  L++  + +I  ++ +G+ G GGAGF T  K     +    R  
Sbjct: 112 EADQQDEWFDLNPCENYLDELPESLIERIRLAGISGMGGAGFPTARK----IQSGLQRTE 167

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D  +M+ +   +IEG  I +  +      I +        ++L+ 
Sbjct: 168 ILILNAAECEPYITADDRLMQDKAQEVIEGIKILNHILKPKLTIIGIEDNKPEAIKALEQ 227

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A                  D DI++      Y  G E  L++ L   +         PA+
Sbjct: 228 A----------------ATDEDIVIRVIPTKYPSGGEKQLIKILTNLEVPV---GGIPAD 268

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           +GL      V N+ S   +   +  G               ++ +++G     P  V   
Sbjct: 269 IGL-----MVQNIGSAYAIKRAVCDGEPLI----------ERVVTLTGKTFKQPRNVWAL 313

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +      L+++           L   I GG  +                        L  
Sbjct: 314 IGTPVQSLLDQFGYKADKKSPRL---IMGGPMMGF---------------------TLPH 349

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
           A V +   +  I+   +R      HE SC +C+ C E   
Sbjct: 350 ANVPITKTANCILAPTYREIDPRSHEMSCIRCSQCAEACP 389


>gi|320156874|ref|YP_004189253.1| electron transport complex protein RnfC [Vibrio vulnificus
           MO6-24/O]
 gi|319932186|gb|ADV87050.1| electron transport complex protein RnfC [Vibrio vulnificus
           MO6-24/O]
          Length = 690

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 135/385 (35%), Gaps = 67/385 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D++++ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QQSSDYLLDVIRMAGISGMGGAGFPTAKK----IQSGLGRTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +++     +++G  I    +      I +        ++L++A                 
Sbjct: 186 LLQEHAEEVLQGIEIVEHILQPKLTIIGIEDNKPEAIKALESAAQNR------------- 232

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 233 ---DIVIRVIPTKYPSGGEKQLIKVLTNKEV---PAGGIPADIGI-----LVQNVGSLYA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G    +          ++ +++G+    P  V   +      L+E+       
Sbjct: 282 IKRAVMDGEPMVN----------RVVTLTGNTFETPRNVWVPLGTPVHALLEQFGY---Q 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   S  I+    +
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------SLPHANVPITKTSNCILAPTRK 367

Query: 336 LSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS-KNIEGRTICAL 393
                 +E  C +C  C E       ++ + ++  A+  E D   E++ K+      CA 
Sbjct: 368 EISPAGYEMECIRCGACAEACP--ASLLPQQLQWHAKAEEFDKCEELNLKDCIECGACAF 425

Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQ 418
              +  P+    +  +  I  R  +
Sbjct: 426 VCPSEIPLVSYYRQAKAEIRTRAQE 450


>gi|27366363|ref|NP_761891.1| electron transport complex protein RnfC [Vibrio vulnificus CMCP6]
 gi|27362564|gb|AAO11418.1| Electron transport complex protein rnfC [Vibrio vulnificus CMCP6]
          Length = 919

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 135/385 (35%), Gaps = 67/385 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D++++ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QQSSDYLLDVIRMAGISGMGGAGFPTAKK----IQSGLGRTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +++     +++G  I    +      I +        ++L++A                 
Sbjct: 186 LLQEHAEEVLQGIEIVEHILQPKLTIIGIEDNKPEAIKALESAAQNR------------- 232

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 233 ---DIVIRVIPTKYPSGGEKQLIKVLTNKEV---PAGGIPADIGI-----LVQNVGSLYA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G    +          ++ +++G+    P  V   +      L+E+       
Sbjct: 282 IKRAVMDGEPMVN----------RVVTLTGNTFETPRNVWVPLGTPVHALLEQFGY---Q 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   S  I+    +
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------SLPHANVPITKTSNCILAPTRK 367

Query: 336 LSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS-KNIEGRTICAL 393
                 +E  C +C  C E       ++ + ++  A+  E D   E++ K+      CA 
Sbjct: 368 EISPAGYEMECIRCGACAEACP--ASLLPQQLQWHAKAEEFDKCEELNLKDCIECGACAF 425

Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQ 418
              +  P+    +  +  I  R  +
Sbjct: 426 VCPSEIPLVSYYRQAKAEIRTRAQE 450


>gi|37679374|ref|NP_933983.1| electron transport complex protein RnfC [Vibrio vulnificus YJ016]
 gi|37198117|dbj|BAC93954.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Vibrio
           vulnificus YJ016]
          Length = 885

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 135/385 (35%), Gaps = 67/385 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D++++ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QQSSDYLLDVIRMAGISGMGGAGFPTAKK----IQSGLGRTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +++     +++G  I    +      I +        ++L++A                 
Sbjct: 186 LLQEHAEEVLQGIEIVEHILQPKLTIIGIEDNKPEAIKALESAAQNR------------- 232

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 233 ---DIVIRVIPTKYPSGGEKQLIKVLTNKEV---PAGGIPADIGI-----LVQNVGSLYA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G    +          ++ +++G+    P  V   +      L+E+       
Sbjct: 282 IKRAVMDGEPMVN----------RVVTLTGNTFETPRNVWVPLGTPVHALLEQFGY---Q 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   S  I+    +
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------SLPHANVPITKTSNCILAPTRK 367

Query: 336 LSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS-KNIEGRTICAL 393
                 +E  C +C  C E       ++ + ++  A+  E D   E++ K+      CA 
Sbjct: 368 EISPAGYEMECIRCGACAEACP--ASLLPQQLQWHAKAEEFDKCEELNLKDCIECGACAF 425

Query: 394 GDAAAWPIQGLIKNFRPLIEERIDQ 418
              +  P+    +  +  I  R  +
Sbjct: 426 VCPSEIPLVSYYRQAKAEIRTRAQE 450


>gi|156310284|ref|XP_001617721.1| hypothetical protein NEMVEDRAFT_v1g156896 [Nematostella
          vectensis]
 gi|156195451|gb|EDO25621.1| predicted protein [Nematostella vectensis]
          Length = 73

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 48/72 (66%)

Query: 4  DQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
          D+DRIFTNLYG     L  ++SRG W    +I+ KG +WI+ E+  SGLRGRGGAGF TG
Sbjct: 1  DEDRIFTNLYGRHDWKLKGAISRGDWYKTKEIILKGPEWILKEITTSGLRGRGGAGFPTG 60

Query: 64 MKWSFMPKVCSD 75
          MKW FM K    
Sbjct: 61 MKWGFMNKPSDG 72


>gi|167751857|ref|ZP_02423984.1| hypothetical protein ALIPUT_00099 [Alistipes putredinis DSM 17216]
 gi|167660098|gb|EDS04228.1| hypothetical protein ALIPUT_00099 [Alistipes putredinis DSM 17216]
          Length = 449

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 119/387 (30%), Gaps = 72/387 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
                 I+  +K +G+ G GGA F T +K +       +    L++N  E EP    D  
Sbjct: 119 TLSAPEILARIKEAGIVGMGGAAFPTQVKLTVPAGKKVEH---LIINGVECEPYLTSDHR 175

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M      L+ G  I   A+G   A I +          L   +   Y            
Sbjct: 176 VMLERSEELLVGVTILMRALGVSGASIGIENNKPDAIARLSR-LAPSYPG---------- 224

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I V      Y  G E  L+ ++ G++  P   P  P +VG       V NV +   
Sbjct: 225 ----IRVVPLRVRYPQGGEKQLIAAVTGREVPPP--PGLPIDVG-----AVVCNVSTTVA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   ++          +      ++ +++G  +  P  +          L+E   G   G
Sbjct: 274 VYDAVQ----------KNKPLIERVVTVTGRQMEAPKNLLVRFGTPVAVLLEAAGGVPAG 323

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L     GG  +                         G + + V+        A  R
Sbjct: 324 DVKVL----NGGPMMG------------RAMSNLASPVVKGCSGITVLGG-----AAALR 362

Query: 336 LSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
                +  SC +C  C       +   +M +L +    +R ++    V+  IE    C  
Sbjct: 363 ----GRESSCIKCAKCVSACPMGLEPYLMAKLSRRKLWER-LEA-EWVTNCIE----CGC 412

Query: 394 GDAAA---WPIQGLIKNFRPLIEERID 417
                    P+   I+  +  +   I 
Sbjct: 413 CQFTCPADIPLLDFIRMGKQEVGALIR 439


>gi|251792842|ref|YP_003007568.1| electron transport complex protein RnfC [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534235|gb|ACS97481.1| electron transport complex protein RnfC [Aggregatibacter
           aphrophilus NJ8700]
          Length = 843

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/379 (15%), Positives = 117/379 (30%), Gaps = 70/379 (18%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L K  + ++ ++  +G+ G GGA F T  K          +   L++N  E EP    D 
Sbjct: 129 LTKTPEQLVEKIYQAGIAGLGGAVFPTAAK----IHSAEKQVKLLIINGAECEPYITCDD 184

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MR     +IEG  I  + +      I V    +    +L+ A+               
Sbjct: 185 RLMRDYADEIIEGVRIIRYILRPEKVVIAVEDNKLEAVSALERALHGAN----------- 233

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +           ++G+      + NV +  
Sbjct: 234 ----DIEIRIIPTKYPSGAAKQLIQVLTGMEV---PSGQRSFSIGV-----LMQNVGTAF 281

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  + +              L+++      
Sbjct: 282 AVKRAVINDEPLI----------ERVVTLTGDKIPHKGNYWARFGTPIYHLLQQA----Y 327

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
             +D    V  GG  +  +            + L                          
Sbjct: 328 YQYDQRFPVFMGGPMMGFILPDLNAPLTKVSNCLLAPDHF-------------------- 367

Query: 335 RLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
             +   + +SC +C+ C +      M + +    +    ++  +  Y +   IE   ICA
Sbjct: 368 EYAPPEEEKSCIRCSACSDACPVKLMPQQLYWFARSEDHEKAEE--YSLKDCIECG-ICA 424

Query: 393 LGDAAAWPIQGLIKNFRPL 411
               +  P   LI+ FR  
Sbjct: 425 YVCPSHIP---LIQYFRQE 440


>gi|162446934|ref|YP_001620066.1| NADH oxidoreductase complex RnfABCDGE type, C subunit [Acholeplasma
           laidlawii PG-8A]
 gi|161985041|gb|ABX80690.1| NADH oxidoreductase complex RnfABCDGE type, C subunit [Acholeplasma
           laidlawii PG-8A]
          Length = 432

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 113/348 (32%), Gaps = 53/348 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  ++  +N  K +GL G GG+GF T +K +   K        ++ N  E EP    D +
Sbjct: 118 KLTKEDYVNITKEAGLVGLGGSGFPTYIKLNTKNK-----IDIILANGVECEPKLISDYE 172

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M   P  LI G + A  A+GA    I V+  ++   E ++ +++               
Sbjct: 173 VMMESPDELIRGLIYAMKAVGAPKGVIAVKKRYVELVERIRFSLN-------------SY 219

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + DI V      Y  G E   LE++E   G    +   PA+ G+        NV ++  
Sbjct: 220 TEYDIKVVPVGNHYPQGWE---LEAIEAATGIKVPQFKLPADYGI-----IPFNVSTLQS 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   ++                 + F +SG      + +  +      LI+   G     
Sbjct: 272 IYHAVKFNLPVL----------ERYFVLSGDGVVNKSFKARIGTPIQSLIQLAGG--YVD 319

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST---DII--- 330
                 +I GG  +                 L    S L      +   S      +   
Sbjct: 320 KAVPKTLIMGGPMMGSNVTNDDIVTTHTATSLIVQNSLLLNEDPCIHCASCVYSCPVQIQ 379

Query: 331 ------KAIWRLSVFYKHES---CGQCTPCREGTGWMMRVMERLVKGI 369
                         F K  S   C +C  C       + + + + +G 
Sbjct: 380 PVQIMNAVKANDKDFLKALSVNKCIECGLCSFVCPSKIHLTDYMREGK 427


>gi|327479772|gb|AEA83082.1| electron transport complex protein RnfC [Pseudomonas stutzeri DSM
           4166]
          Length = 827

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 109/344 (31%), Gaps = 57/344 (16%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +++        ++  ++ +G+ G GGAGF T +K +  P     R   L++N  E 
Sbjct: 120 DYRALER------PALLELIRQAGISGLGGAGFPTAVKLTPPPTQ---RIRTLIINGTEC 170

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR +   L+ G  I +  +      I +         +++AA+ E     
Sbjct: 171 EPYITADDLLMREKAAELVAGIEILAHLVQPQDVLIGIEDNKPEAIAAVRAAIGER---- 226

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                        + V      Y  G E  L++ L G++         PA++G+      
Sbjct: 227 ----------PFVLKVF--PTKYPSGGEKQLIQILTGEEV---PSGGLPADIGM-----L 266

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
             NV +   +   +  G           +R T L      +  P  VE  +     EL+ 
Sbjct: 267 CQNVGTCVAIHDAVLLGKPLI-------SRITTLTG--EALARPMNVEALIGTPTGELLA 317

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                       ++     G ++P L    ++          E       A   +     
Sbjct: 318 FAGLEQNRLNRLIMGGPMMGFTLPSLDVPVIKTTNCLLASTFEELPPPPPALPCIRCGEC 377

Query: 328 ---DIIKAIWRLSVFYK----HES--------CGQCTPCREGTG 356
                +  + +   F+     HE         C +C  C     
Sbjct: 378 AEACPVSLLPQQLHFFALGQEHEQLKAHHLFDCIECGACAYVCP 421


>gi|257790463|ref|YP_003181069.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella
           lenta DSM 2243]
 gi|317490037|ref|ZP_07948528.1| electron transport complex [Eggerthella sp. 1_3_56FAA]
 gi|257474360|gb|ACV54680.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella
           lenta DSM 2243]
 gi|316910878|gb|EFV32496.1| electron transport complex [Eggerthella sp. 1_3_56FAA]
          Length = 442

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 126/383 (32%), Gaps = 66/383 (17%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +   +  +K SGL G GGAGF T +K +       D     VVNA E EP    D   
Sbjct: 122 TDQASFLAAIKKSGLVGLGGAGFPTDIKLAPPNLEEIDLY---VVNATECEPYLSTDYRE 178

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M   P  ++ G       +G   A I +     +  E ++           L  +     
Sbjct: 179 MMESPDDVLFGIRETCRHLGIPNAMICIESNKPKAIELMRE----------LTKD----- 223

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  I V      Y  G E  L+ +  G +  PR K     +VG+      +NNV ++A +
Sbjct: 224 DSSIQVKALPSRYPQGAENVLVHNATG-RVVPRGK--RQTDVGV-----MLNNVTTMASI 275

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              L+ G               + F++SG  +  PC     +     +++E         
Sbjct: 276 GRFLKTGMPLVK----------RRFTVSGDAIARPCNANIIIGTRLRDVMEFAGLTKEPH 325

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 V+ GG  +            MDY  +++         V+V  +           
Sbjct: 326 K-----VVLGGPMMG------NAQIDMDYPVIRQ------NNGVLVFSKDA--------- 359

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV-SKNIEGRTICALGD 395
                  +C +C  C       +  +   +K     ++   L ++ +    G   C+   
Sbjct: 360 MEQPATTACIRCGRCTNSCPMQLSPIA--IKKAYTVQDAKKLDDLMADLCMGCGTCSFVC 417

Query: 396 AAAWPIQGLIKNFRPLIEERIDQ 418
            A  P+    K  R  +   + +
Sbjct: 418 PAKQPLAQTSKLARDFMRAEMAR 440


>gi|146281594|ref|YP_001171747.1| electron transport complex protein RnfC [Pseudomonas stutzeri
           A1501]
 gi|145569799|gb|ABP78905.1| electron transport complex protein rnfC [Pseudomonas stutzeri
           A1501]
          Length = 827

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 109/344 (31%), Gaps = 57/344 (16%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +++        ++  ++ +G+ G GGAGF T +K +  P     R   L++N  E 
Sbjct: 120 DYRALER------PALLELIRQAGISGLGGAGFPTAVKLTPPPTQ---RIRTLIINGTEC 170

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR +   L+ G  I +  +      I +         +++AA+ E     
Sbjct: 171 EPYITADDLLMREKAAELVAGIEILAHLVQPQDVLIGIEDNKPEAIAAVRAAIGER---- 226

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                        + V      Y  G E  L++ L G++         PA++G+      
Sbjct: 227 ----------PFVLKVF--PTKYPSGGEKQLIQILTGEEV---PSGGLPADIGM-----L 266

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
             NV +   +   +  G           +R T L      +  P  VE  +     EL+ 
Sbjct: 267 CQNVGTCVAIHDAVLLGKPLI-------SRITTLTG--EALARPMNVEALIGTPTGELLA 317

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                       ++     G ++P L    ++          E       A   +     
Sbjct: 318 FAGLEQNRLNRLIMGGPMMGFTLPSLDVPVIKTTNCLLASTFEELPPPPPALPCIRCGEC 377

Query: 328 ---DIIKAIWRLSVFYK----HES--------CGQCTPCREGTG 356
                +  + +   F+     HE         C +C  C     
Sbjct: 378 AEACPVSLLPQQLHFFALGQEHEQLKAHHLFDCIECGACAYVCP 421


>gi|78485378|ref|YP_391303.1| electron transport complex, RnfABCDGE type, C subunit
           [Thiomicrospira crunogena XCL-2]
 gi|78363664|gb|ABB41629.1| NADH oxidoreductase, RnfABCDGE type, C subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 704

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/334 (17%), Positives = 106/334 (31%), Gaps = 57/334 (17%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             D +   V  +G+ G GGAGF T  K          +  YL++N  E EP    D  +M
Sbjct: 148 TPDKLKALVHKAGIVGMGGAGFPTFAK----IPSQPGQIKYLLINGAECEPFITCDDMLM 203

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           +     +++G +I + ++G       +     +  +++Q A                  D
Sbjct: 204 QTRAEDIVQGAMIVAQSLGIKHILCGIEDNKAKAIKAMQKA----------------AKD 247

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D+ ++  A AY  G +T L + L G +           +VG+      + NV + A + 
Sbjct: 248 TDVQINVVATAYPMGGQTQLTQELTGIELPAHTHAI---DVGV-----LMMNVATFAAIY 299

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
             + +G    S +   +  G          N P  ++  +  +F EL           + 
Sbjct: 300 QAVVQGNPLTSRYITVSGLGL---------NKPFNIDARLGTSFKELALLADPKTPLDYP 350

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS- 337
            +     GG  +           I   + +           +  +     +      L  
Sbjct: 351 LIK----GGPMMGIEMQSNDVPVIKTTNCILATPPEPLEEPMPCIRCGECMDACPVNLLP 406

Query: 338 ----------VFYKHES-----CGQCTPCREGTG 356
                      F K ES     C +C  C     
Sbjct: 407 QQLYWHSRSHEFDKVESLKVFDCIECGCCSFVCP 440


>gi|302341925|ref|YP_003806454.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfarculus baarsii DSM 2075]
 gi|301638538|gb|ADK83860.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfarculus baarsii DSM 2075]
          Length = 641

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 51/119 (42%)

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                ++   + + + +G   + + D S D++          + ESCGQC PCR G   M
Sbjct: 22  DQLPAEFAAGRPLRAFMGWDGLFIHDESVDLVDMARAYMDQAQKESCGQCFPCRLGVKAM 81

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
             +++ L  G     ++D L  +++ +   + C +G     PI  L+ + R      I+
Sbjct: 82  SAILDGLCAGKGAPADLDRLESLARFVSRASRCDIGQTTPRPILDLLTHRRQAFLAAIE 140


>gi|56552708|ref|YP_163547.1| RnfABCDGE type eelectron transport complex subunit C [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|56544282|gb|AAV90436.1| electron transport complex, RnfABCDGE type, C subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 487

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 99/327 (30%), Gaps = 60/327 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +            I   V  +G+ G GGA F   +K     +        +V+N  E EP
Sbjct: 114 EAYSDPFAVDPQLIRERVAWAGVVGLGGAAFPAAVKLE---QSSQKPIKMVVLNGAECEP 170

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     +I G  + + A+GA    I +          ++       A    
Sbjct: 171 YLTGDDRVMQEYADEVISGGRLIAHAVGAPKVVIGIERNKPEALAIMKK---TAEAYD-- 225

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     ++ +      Y  G    L+++L G +   R      A+VG+      V 
Sbjct: 226 ----------NVEIADLPAQYPVGSARHLVQALTGLEISART---RIADVGV-----LVQ 267

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NV +   V    R G    S     +  G          N P T++  +      LI   
Sbjct: 268 NVGTARAVWRSARYGEPLISRIVTVSGGGM---------NDPKTLDAPIGSPVKALI-DF 317

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
           CGG+    +    ++ GG  +            +            GTA ++ +      
Sbjct: 318 CGGM---NEKAEQIVTGGPLMGVGLPNI--DVPV----------IKGTAGILALTSEE-- 360

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTG 356
                        E+C +C  C +   
Sbjct: 361 -------MDHRPTEACLRCGRCVDVCP 380


>gi|255526883|ref|ZP_05393780.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|296186944|ref|ZP_06855344.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255509446|gb|EET85789.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|296048382|gb|EFG87816.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 449

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 107/309 (34%), Gaps = 57/309 (18%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y ++N  E EP    D+ IMR++   +++        + A    I ++ E+ +E E+L+
Sbjct: 31  EYFIINGLECEPLLQSDKYIMRNKSDEIVKAAEEIGKLVEASNIVIGLKKEYEKEIEALK 90

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            ++D+               + +I ++     Y  G+E  L+  + G+   P      P 
Sbjct: 91  KSIDKL--------------NSNITLYLSDVFYPAGDEQILVYEVTGRTIPP---AGIPL 133

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           NVG       V+NV ++  +   +      Y           K  ++ G V  P  ++  
Sbjct: 134 NVG-----AVVSNVSTVFNIYEAMEDKPVMY-----------KYVTVIGEVGTPSIIKVP 177

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +     E IE   G     +    AVI GG          M G  +    L+        
Sbjct: 178 IGTPVLECIESCGGAKLDDY----AVIMGGP---------MMGKRVLKKDLESRFITKTD 224

Query: 318 AAVIVMDRSTDII---KAIWRLSVFYKHESCGQCTPCREGTGWM--------MRVMERLV 366
            A+IV+     +    K            +C QC  C +              ++M  + 
Sbjct: 225 GAIIVLSSEHYLFNREKITIEHMKKQAKSACIQCHYCTDMCPRNLIGHPMHPHKIMRNVA 284

Query: 367 KGIAQKREI 375
            G+  +  +
Sbjct: 285 FGVEDEEAL 293


>gi|52424975|ref|YP_088112.1| electron transport complex protein RnfC [Mannheimia
           succiniciproducens MBEL55E]
 gi|81691415|sp|Q65U33|RNFC_MANSM RecName: Full=Electron transport complex protein rnfC; AltName:
           Full=Nitrogen fixation protein rnfC
 gi|52307027|gb|AAU37527.1| NqrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 723

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 120/382 (31%), Gaps = 76/382 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L +  + +I ++  +G+ G GGA F T  K          +   L++N  E EP    D 
Sbjct: 129 LSQSAEQLIEKIYQAGIAGLGGAVFPTAAK----IDSAQKKVKLLIINGAECEPYITCDD 184

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MR  P  +IEG  I  + +      I V        +S++ A+               
Sbjct: 185 RLMRDNPDEIIEGIRILRYILRPEKVVIAVEDNKPEAVQSIKNALQGAN----------- 233

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +          +++G+      + NV +  
Sbjct: 234 ----DIEIRVIPTKYPSGAAKQLIQILTGMEV---PAGQRSSSIGV-----LMQNVGTAF 281

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            +   +                  ++ +++G  +                L++       
Sbjct: 282 AIKRAIINDEPLI----------ERVVTLTGDKIPNKGNQWVRFGTPISFLLKNVG---- 327

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
             +D  L V  GG  +                 L  + + +      ++          +
Sbjct: 328 YQYDERLPVFLGGPMMGL--------------TLPNLDAPITKLGNCILAPDH------F 367

Query: 335 RLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
                 + +SC +C+ C +      M + +    +    ++  +  Y +   IE    C 
Sbjct: 368 EYDPQAREQSCIRCSACSDACPVHLMPQQLYWYARSEDHEKSEE--YSLKDCIE----CG 421

Query: 393 LGDAAAWPIQG---LIKNFRPL 411
           L    A+       LI+ FR  
Sbjct: 422 LC---AYVCPSHIPLIQYFRQE 440


>gi|325971162|ref|YP_004247353.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta
           sp. Buddy]
 gi|324026400|gb|ADY13159.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta
           sp. Buddy]
          Length = 436

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 114/346 (32%), Gaps = 62/346 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E+    ++ ++K  G+ G GGA F   +K+S             VVN  E EP    D  
Sbjct: 119 EQSSADLLAKIKDLGIVGMGGATFPAHVKFSVPRDKK---VEAFVVNGVECEPYLTADYR 175

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           IM  +    +EG +I +   GA    I +          L   + +              
Sbjct: 176 IMLEKGEEALEGAMICAKITGAQRVIIGIELNKPDCIAHLNEIIKQ-------------- 221

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I +      Y  G+E  LL++    +  P  K   P +VG       V N+ +   
Sbjct: 222 KGYPIEIMGLKIKYPQGDEKQLLKA-TIHREIPSGK--LPLDVG-----AVVANIGTCNA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G S Y           ++ S++G  +  P  +   +     +L+   CGG + 
Sbjct: 274 IYEAIVLGKSLY----------ERVISVTGECIANPKNILAPVGTKVSDLL-AFCGGFKS 322

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             + L   + GG  +                         G++ ++ +      ++    
Sbjct: 323 EPEKL---VSGGPMMGF----SFFDTETPIT--------KGSSGLLALPPQKK-VRTTAC 366

Query: 336 LSVFYKHESCGQCT-PCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
           L       +CG+C   C  G     ++   +  G  ++     L +
Sbjct: 367 L-------NCGRCVAACPIGL-MPAKLYRLINNGHYEEAMQTSLMD 404


>gi|190149438|ref|YP_001967963.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262757|ref|ZP_07544384.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914569|gb|ACE60821.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871902|gb|EFN03619.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 770

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 111/337 (32%), Gaps = 65/337 (19%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            + + R     +D  L      II +V   G+ G GGA F T  K S   K C      L
Sbjct: 124 DEWIER---QPIDDFLTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVL 176

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           ++N  E EP    D  +M+   H  +EG  I  + +      + +     +  ++++ A+
Sbjct: 177 IINGAECEPYITCDDRLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIKAMEQAL 236

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                    GSN       DI +      Y  G    L++ L G +     +      +G
Sbjct: 237 K--------GSN-------DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMG 278

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMS 259
           +      ++NV ++  V   +                  ++ +++G  +     V   + 
Sbjct: 279 I-----VMHNVGTVFAVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLG 323

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
                L+E+         D+   V  GG     +              L+ + + +   A
Sbjct: 324 TPIQHLLEQVD----YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTA 365

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
             ++          +  +      SC +C+ C +   
Sbjct: 366 NCIIAPDH------FEYAPPEPERSCIRCSSCSDACP 396


>gi|307243115|ref|ZP_07525289.1| electron transport complex, RnfABCDGE type, C subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306493475|gb|EFM65454.1| electron transport complex, RnfABCDGE type, C subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 447

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 111/326 (34%), Gaps = 58/326 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  ++ I+  VK +G+ G GGA F   +K S  P   ++   Y+++N  E EP    D  
Sbjct: 118 DLSKEEIVGIVKEAGIVGMGGATFPNHVKISPPPDSKAE---YVILNGAECEPYLTADDR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M   P  ++ G      A+     FI +         ++  A +               
Sbjct: 175 LMVENPEDVVYGIRALMKALDVSKGFIGIEVNKPEAIANVTKAAEP-------------- 220

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              ++ V      Y  G E  L+ +  G++         P  VG       V+NV + A 
Sbjct: 221 -YPEVEVVSLQVKYPEGAEKQLIYACTGREV---PSGALPIAVG-----AVVDNVATAAA 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   ++ G              T +      +  P  +   +   F E+IE+ CGG++  
Sbjct: 272 IANAIKTGMPLVERI-------TTVTGPC--IREPKNLVTKIGTKFSEIIEQ-CGGLKED 321

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 +I GG  +    A        +           G++ ++++D    +       
Sbjct: 322 VVARK-LIAGGPMMGF--AQFTDDISTNK----------GSSGILILDEDIAVAPEPMN- 367

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVM 362
                   C +C  C +     ++ +
Sbjct: 368 --------CIKCGRCTDVCPAFLQPL 385


>gi|160902086|ref|YP_001567667.1| electron transport complex, RnfABCDGE type, C subunit [Petrotoga
           mobilis SJ95]
 gi|160359730|gb|ABX31344.1| electron transport complex, RnfABCDGE type, C subunit [Petrotoga
           mobilis SJ95]
          Length = 440

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 130/381 (34%), Gaps = 76/381 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
              + + + +     +N  K     ++ +IN VK +G+ G GGA F + +K S       
Sbjct: 102 RTSEDIWEYIEHD--ENFKKF---SKEELINIVKKAGIVGLGGAMFPSHVKLSIPAGKKV 156

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D   YL++N  E EP    D  +MR     +I+G  I  + +     ++ +        +
Sbjct: 157 D---YLIINGAECEPYITVDDMMMRTYTEEIIKGIKIIEYIVNPGKIYVGIEENKPEAIK 213

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +++ A+                 + +I V      Y  G E  L++S+  K+  P    P
Sbjct: 214 AMKNALK----------------NENIEVAILKTKYPQGAEKQLIKSIT-KREVPSGGLP 256

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
             A          V N+ +   +   +  G               +  ++SG V  P   
Sbjct: 257 IDAGA-------LVFNISTTYAIYDAVINGKPLV----------ERGITLSGGVKKPGNY 299

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
              +     +L+ +         D    +I GG     LP   +              + 
Sbjct: 300 WFRIGTKVSDLLNQVGLVEEEKIDR---IIYGGPMTG-LPLPNIDLP-----------TF 344

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTGWMMR--VMERLVKGIAQ 371
            G  A+ V+ +            +  KHE  C +C  C +     ++   +++L    A+
Sbjct: 345 KGNNAITVLTKE----------EIPQKHEYPCIRCASCVKACPIGLQPYYLKKLAD--AR 392

Query: 372 KREIDLLYEVSKNIEGRTICA 392
           K +I     +   IE    C 
Sbjct: 393 KNDIAQENGIMDCIE----CG 409


>gi|323694119|ref|ZP_08108298.1| hypothetical protein HMPREF9475_03161 [Clostridium symbiosum
           WAL-14673]
 gi|323501836|gb|EGB17719.1| hypothetical protein HMPREF9475_03161 [Clostridium symbiosum
           WAL-14673]
          Length = 452

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 114/343 (33%), Gaps = 69/343 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K++            +++N  E EP    DR +MR++   LI+   +     GA 
Sbjct: 20  FPTHAKYN-------GTIETIIINGAECEPLLQTDRYLMRNKARELIQAADMLLRETGAG 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++  + RE ++L+ A+                +   + +H     +  G+E  ++
Sbjct: 73  RCVIALKHSYTREIKALEEAI--------------HSFSSSVSLHRLESFFPAGDEQTIV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G    P      P NVG       V+N  ++  +   +                  
Sbjct: 119 YEVTGNVVPP---GGIPLNVG-----CVVSNAATLFCIYEAME-----------GRPFTQ 159

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P   +  +     E ++   G +   +     V+ GG          M 
Sbjct: 160 KYLTVTGAVGKPVIAKVPIGTPVSECLKLAGGPLIPDY----VVVNGGP---------MM 206

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AIWRLSVFYKHESCGQCTPCREGTG 356
           G ++  +  +        + +IV+   + I +      R  +     +C QC+ C +   
Sbjct: 207 GKLLTKEEAENAWVTKTMSGLIVLPADSSIARRSEVTVRHMLNRAKSACIQCSFCSQLCP 266

Query: 357 WM--------MRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
                      R+M +L         +D       +I    +C
Sbjct: 267 RALLGHPLKPHRIMRKLASCHDITEILDD-----SDIRNAALC 304


>gi|182626452|ref|ZP_02954204.1| polyA polymerase family protein [Clostridium perfringens D str.
           JGS1721]
 gi|177908249|gb|EDT70807.1| polyA polymerase family protein [Clostridium perfringens D str.
           JGS1721]
          Length = 436

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 105/329 (31%), Gaps = 64/329 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +N+    +     ++  VK  G+ G GGA F   +K +           Y+++NA E EP
Sbjct: 111 ENLKYSSKLSLKDVVKLVKDYGIVGLGGATFPCHVKLNV---KEDKEIKYIIINAAECEP 167

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      +I G  I          +I +    +   +  +            
Sbjct: 168 YLTCDHRVMLEYTEEIISGLRILLELFPKALIYIGIEDNKLNAIDKFK------------ 215

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
              S LG D  I V      Y  G E  L+ +L   +         P ++G       V 
Sbjct: 216 ---SILGEDNKIKVMPLKSKYPQGSEKHLIYALTKLQV---PSGKLPLDIG-----CIVF 264

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +I  +   L  G               ++ +++G  + +P  +   +     ++IE 
Sbjct: 265 NVSTIYQLYASLINGLPLT----------ERIITVTGDSIRFPKNLRVKIGTPVKDIIE- 313

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG     +    +I GG  +    +       +            GT+ ++ + +  D
Sbjct: 314 FCGGFINKPNK---IILGGPMMG--TSVNSLDLPITK----------GTSGILCLSKVDD 358

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                      +    C +C  C      
Sbjct: 359 -----------FPKSHCIRCGKCLNSCPM 376


>gi|29346028|ref|NP_809531.1| Na+-transporting NADH:ubiquinone oxidoreductase electron transport
           complex protein RnfC [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337922|gb|AAO75725.1| Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport
           complex protein rnfC [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 445

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/330 (18%), Positives = 116/330 (35%), Gaps = 62/330 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + K  E   + I+ ++  +G+ G GGA F T +K    P   ++    +++NA E EP  
Sbjct: 115 LVKECELSSEEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKAEC---VIINAVECEPYL 171

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M      ++ G  I   A+  + AFI +        E +   V   YA      
Sbjct: 172 TADHQLMLEHAEEVMVGVSILMKAVKVNKAFIGIENNKPDAIELMTK-VASSYAG----- 225

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I V      Y  G E  L++++  K+       P             V NV
Sbjct: 226 ---------IEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALPISTGA-------VVQNV 268

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +   V   ++          +      ++ +++G  V  P      +     +LI   C
Sbjct: 269 GTAFAVYEAVQ----------KNKPLFERVITVTGKSVAKPSNFLARIGTPMKQLI-DAC 317

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GG+    ++   VI GG          M  A+M+     E+ +  G++ +++M++     
Sbjct: 318 GGL---PEDTGKVIGGGP--------MMGKALMNI----EVPTAKGSSGILIMNQKEAKR 362

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                       ++C +C  C       + 
Sbjct: 363 GEA---------QTCIRCAKCVSACPMGLE 383


>gi|77360046|ref|YP_339621.1| electron transport complex protein RnfC [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874957|emb|CAI86178.1| Electron transport complex protein rnfC [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 846

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 117/348 (33%), Gaps = 69/348 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               D +IN +  +G+ G GGAGF T     ++         +L++NA E EP    D  
Sbjct: 130 TLSHDELINIIHQAGISGMGGAGFPT-----YVKADTKQPIEFLIINAVECEPYITADDM 184

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +++G  +    +      + +            AA+ +      L       
Sbjct: 185 LMREHAKQIVQGIELMQQLLNPTLCIVGIEDNKPEAI----AAMIQAAEHNSL------- 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I+V      Y  G E  L++ L   +  P      PA+VG+      V+N  ++  
Sbjct: 234 ----ILVQKVPTIYPSGGEKQLIK-LLTNREVPNNG--IPADVGI-----LVHNTGTLFA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G+ ++ P  V   +      L++        
Sbjct: 282 IQQAVYEG----------KPLIERVVTVTGNTIHKPGNVWALLGSEIKHLLD----CQGF 327

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  VI GG  +                 ++ +G    T  ++  D           
Sbjct: 328 SPVPQQQVIMGGPMMGF-----------TLPTIR-IGVVKTTNCILAPDH--------KE 367

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEV 381
           L+     ++C +C+ C +      + + ++   K     +E D L E 
Sbjct: 368 LAEPGPEKACIRCSACADACPASLLPQQLQWFAK----SKEYDKLQEH 411


>gi|153953484|ref|YP_001394249.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|153953488|ref|YP_001394253.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|219854106|ref|YP_002471228.1| hypothetical protein CKR_0763 [Clostridium kluyveri NBRC 12016]
 gi|146346365|gb|EDK32901.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|146346369|gb|EDK32905.1| RnfC related NADH dehydrogenase [Clostridium kluyveri DSM 555]
 gi|219567830|dbj|BAH05814.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 441

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 106/306 (34%), Gaps = 66/306 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +        +  Y +VN  E EP    D+ +MR+    ++E       AIGA 
Sbjct: 20  FPTHVKLNT-------KVEYFIVNGLECEPLLQSDKYLMRNYSDEIVETVQKIGEAIGAA 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++  +  E E+L+ ++++               +  + +      Y  G+E  L+
Sbjct: 73  HAVIGLKAAYHTEIEALKKSINKL--------------NSTVELFLSEAFYPAGDEQVLV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P++VG       V+NV ++  +   +      Y           
Sbjct: 119 YEVTGRTIPP---GGIPSSVG-----AVVSNVGTVVNIADAINDKPVTY----------- 159

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP-CLPAGQM 298
           K  ++ G V  P  ++  +     E I+K  G     +     VI GG  +   L   + 
Sbjct: 160 KYVTVIGEVGNPSIIKVPIGTKVMECIDKCGGTTVDDY----TVIMGGPMMGKKLSKEEA 215

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI-------IKAIWRLSVFYKHESCGQCTPC 351
              ++                +IV+ R+  I       I  +          SC QC  C
Sbjct: 216 EDTVITKT----------NGGIIVIPRNHLIQQKESISIDHMINK----AKSSCIQCHYC 261

Query: 352 REGTGW 357
            +    
Sbjct: 262 TDMCPR 267


>gi|307298643|ref|ZP_07578446.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915808|gb|EFN46192.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 439

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 107/335 (31%), Gaps = 66/335 (19%)

Query: 29  WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W+ ++      +   + II  +K +G+ G GGA F T +K S   +   D    L++N  
Sbjct: 108 WELLEPAKPYEQFEPEEIIQRIKDAGIVGLGGAMFPTNVKLSPPKEKKID---LLILNGA 164

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D   M      ++ G +    A+    A I +     +  E ++ AV     
Sbjct: 165 ECEPYLTIDYRYMLERSEGIVRGILAIMRALKVDNAVIGIEDNKQKAIEQMEVAVRST-- 222

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                          I V      Y  G E  L+ +L  K+  P      P +VG+    
Sbjct: 223 --------------PIQVKRLKTKYPQGAEKQLIYALT-KRKVP--SGGLPLDVGV---- 261

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
             V+N+ +   V   +  G             G         +  P  V   + +   EL
Sbjct: 262 -VVDNIGTAFAVYEAVELGHPLVERGVTLTGEG---------IKKPLNVISRIGVMASEL 311

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           IE   G        +      G +VP +                   +  GT+ + ++ +
Sbjct: 312 IEYAGGAQEIVERIVFGGPMMGITVPKI------DVP----------TVKGTSGITLLMK 355

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           S         L  F     C +C  C       ++
Sbjct: 356 SDP-------LEEF----PCIRCGKCATVCPMNLQ 379


>gi|219854110|ref|YP_002471232.1| hypothetical protein CKR_0767 [Clostridium kluyveri NBRC 12016]
 gi|219567834|dbj|BAH05818.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 442

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 106/306 (34%), Gaps = 66/306 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +        +  Y +VN  E EP    D+ +MR+    ++E       AIGA 
Sbjct: 21  FPTHVKLNT-------KVEYFIVNGLECEPLLQSDKYLMRNYSDEIVETVQKIGEAIGAA 73

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++  +  E E+L+ ++++               +  + +      Y  G+E  L+
Sbjct: 74  HAVIGLKAAYHTEIEALKKSINKL--------------NSTVELFLSEAFYPAGDEQVLV 119

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P++VG       V+NV ++  +   +      Y           
Sbjct: 120 YEVTGRTIPP---GGIPSSVG-----AVVSNVGTVVNIADAINDKPVTY----------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP-CLPAGQM 298
           K  ++ G V  P  ++  +     E I+K  G     +     VI GG  +   L   + 
Sbjct: 161 KYVTVIGEVGNPSIIKVPIGTKVMECIDKCGGTTVDDY----TVIMGGPMMGKKLSKEEA 216

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI-------IKAIWRLSVFYKHESCGQCTPC 351
              ++                +IV+ R+  I       I  +          SC QC  C
Sbjct: 217 EDTVITKT----------NGGIIVIPRNHLIQQKESISIDHMINK----AKSSCIQCHYC 262

Query: 352 REGTGW 357
            +    
Sbjct: 263 TDMCPR 268


>gi|255009555|ref|ZP_05281681.1| electron transport complex protein [Bacteroides fragilis 3_1_12]
 gi|313147331|ref|ZP_07809524.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides
           fragilis 3_1_12]
 gi|313136098|gb|EFR53458.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides
           fragilis 3_1_12]
          Length = 445

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 120/347 (34%), Gaps = 64/347 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + G    +S+ R     + K  E   + I+ ++  +G+ G GGA F T +K    P   +
Sbjct: 100 VDGDEWEESIDRS--PELVKECELTSEEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M      ++ G  I   A+  + AFI +        E
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEHAEEVMVGVSILMKAVKVNKAFIGIENNKPDAIE 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +   V   YA               I V      Y  G E  L++++  K+       P
Sbjct: 215 LMTK-VASSYAG--------------IEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALP 258

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
                        V NV +   V   ++          +      ++ +++G  V  P  
Sbjct: 259 ISTGA-------VVQNVGTAFAVYQAVQ----------KNKPLFERVITVTGKSVAKPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +     +LI   CGG+    ++   VI GG  +    A                 +
Sbjct: 302 FLARIGTPMQQLI-DACGGL---PEDTGKVIGGGPMMG--KALVNTDVP----------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             G++ +++M+R     K   R  +    ++C +C  C       + 
Sbjct: 346 AKGSSGILIMNR-----KEAKRGEI----QNCIRCAKCVSACPMGLE 383


>gi|68250289|ref|YP_249401.1| electron transport complex protein RnfC [Haemophilus influenzae
           86-028NP]
 gi|81335290|sp|Q4QJQ6|RNFC_HAEI8 RecName: Full=Electron transport complex protein rnfC
 gi|68058488|gb|AAX88741.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus
           influenzae 86-028NP]
          Length = 665

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSPEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRTALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGARSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAIINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|90022046|ref|YP_527873.1| electron transport complex protein RnfC [Saccharophagus degradans
           2-40]
 gi|89951646|gb|ABD81661.1| serine/threonine protein kinase [Saccharophagus degradans 2-40]
          Length = 745

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 105/322 (32%), Gaps = 63/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   D ++ +++A+G+ G GGAGF T +K   +    +     L+ N  E EP    D  
Sbjct: 121 QLDHDRLVQKIRAAGIVGMGGAGFPTAIK---VNPKSNKHVKTLIFNGTECEPYITADDM 177

Query: 97  IMRHEPHTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
           +MR     +++G  + +  +G      I +         ++Q A +              
Sbjct: 178 LMRERADDIVKGVQLIARFMGEVEETLIGIEDNKPEAIAAMQKAAEGT------------ 225

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI V      Y  G E  L++ L GK+         PA++G+      V NV +  
Sbjct: 226 ----DIEVVVFPTKYPSGGEKQLIQILTGKEV---PSGGLPADIGI-----VVQNVGTAL 273

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
                +R G           +R T +   +        ++  +      ++E+H      
Sbjct: 274 AAYRAVRFGEPLI-------SRVTTVVGETLTTQR--NIDVLIGTPLSFVLEQHG----F 320

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             +    +I GG  +    A                          V+  +  I+    +
Sbjct: 321 KAEKKQRLIIGGPMMGF--AANDFDVP-------------------VVKTTNCILAPTQK 359

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                    +C +C  C E   
Sbjct: 360 ELPLAPPAQACIRCGMCAEACP 381


>gi|269962090|ref|ZP_06176444.1| RnfC-related protein [Vibrio harveyi 1DA3]
 gi|269833174|gb|EEZ87279.1| RnfC-related protein [Vibrio harveyi 1DA3]
          Length = 910

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 112/323 (34%), Gaps = 66/323 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QESADALIDVIRLAGISGMGGAGFPTAKK----IQSGIARTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     LI+G  I    +      I +        ++L+ A                 
Sbjct: 186 LMQEHADELIQGIEIVEHILKPKLTIIGIEDNKPAAIKALEQA----------------A 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + D+++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 230 MNKDVVIRVIPTKYPSGGEKQLIKILTNKEV---PSGAIPADIGI-----LVQNVGSLYS 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G    +          ++ +++G     P  V   +      L+++       
Sbjct: 282 IKRAVIDGEPVVN----------RIVTLTGKTFKQPRNVWTLLGTPVQALLDEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+    R
Sbjct: 329 ADKKLQRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPKRR 367

Query: 336 --LSVFYKHESCGQCTPCREGTG 356
              S  Y+ E C +C+ C E   
Sbjct: 368 EIASDQYEME-CIRCSQCAEACP 389


>gi|51892034|ref|YP_074725.1| Na+-transporting NADH-quinone reductase subunit 1 [Symbiobacterium
           thermophilum IAM 14863]
 gi|51855723|dbj|BAD39881.1| Na+-transporting NADH-quinone reductase subunit 1 [Symbiobacterium
           thermophilum IAM 14863]
          Length = 446

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 105/356 (29%), Gaps = 71/356 (19%)

Query: 29  WDNVDKIL-------EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           W+ +   L            +I + V+ +GL G GGAGF   +K +  P    D    ++
Sbjct: 108 WEGLPDGLGWDLDPESLDPAFIRDRVRQAGLVGMGGAGFPAAVKLTPKPGTEPD---VVI 164

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
           +N  E EP    D  +M   P  ++ G  +   A GA    I V          L   V 
Sbjct: 165 LNGAECEPAITSDHRLMLEHPEQVVLGLRLFMRASGAKRGIIAVEANKPDAAGKLSQLVA 224

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
                           D  I V      Y  G E  L+ +L  ++  P      P +VG 
Sbjct: 225 G---------------DPAISVEVLPVRYPQGAEKMLVWALL-RRAVP--VGGIPLDVG- 265

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSIT 261
                          V   +   A+             ++ +++G V  P      +  +
Sbjct: 266 --------------AVVQNVATAAAAAVALAEGRPLTHRIVTVTGRVTRPGNWLVPLGTS 311

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
           F +L+E   G        L  VI GG  +    A       +             T +VI
Sbjct: 312 FVDLVEASGGLTG----PLARVIAGGPMMGI--AQPDLDVPV----------IKTTGSVI 355

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM---MRVMERLVKGIAQKRE 374
           ++                     C +C  C           R+    + G     E
Sbjct: 356 LLGPED---------LDETPAGPCIRCGRCVAACPMGLLPARLCSAALAGDWGAAE 402


>gi|238924003|ref|YP_002937519.1| rnfC/nqrF [Eubacterium rectale ATCC 33656]
 gi|238875678|gb|ACR75385.1| rnfC/nqrF [Eubacterium rectale ATCC 33656]
 gi|291524744|emb|CBK90331.1| electron transport complex, RnfABCDGE type, C subunit [Eubacterium
           rectale DSM 17629]
          Length = 443

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 109/328 (33%), Gaps = 60/328 (18%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +++V+ +    ++ II +VK +G+ G GGAGF T +K S       D+  Y++ N  E E
Sbjct: 110 YESVEDVTALSKEEIIEKVKNAGVVGMGGAGFPTHVKLS---PKEPDKIEYIIANCAECE 166

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M   P  LI G  I           + +        E L            
Sbjct: 167 PYLTSDYRRMLENPEELIGGMKIILQLFDNAKGILGIEDNKPDCIEKLTE---------- 216

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           L  +        I V      Y  G E  L+ +  G+    ++    PA+ G       V
Sbjct: 217 LTKDEP-----RIEVCPLMTKYPQGGERQLIYATTGRAINSKM---LPADAG-----CIV 263

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           +NVE+I  V   ++ G                       V  P  +  S+  ++ EL+  
Sbjct: 264 DNVETIIAVYNAVKNGQPVLKRIST---------VTGDAVKNPSNILYSIGTSYQELV-D 313

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             GG +   +    +I GG  +    A                          ++  + D
Sbjct: 314 AAGGFKSQPEK---IISGGPMMGF--AMFSLDIPTTKTSSS------------ILCFTHD 356

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG 356
            + A       ++ ++C  C  C E   
Sbjct: 357 EVAA-------FEPQACINCGRCVEACP 377


>gi|145633619|ref|ZP_01789346.1| electron transport complex protein RnfC [Haemophilus influenzae
           3655]
 gi|144985496|gb|EDJ92312.1| electron transport complex protein RnfC [Haemophilus influenzae
           3655]
          Length = 707

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSPEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRECADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRTALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGARSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAIINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|255691580|ref|ZP_05415255.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260622789|gb|EEX45660.1| Na(+)-translocating NADH-quinone reductase, A subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 445

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 126/355 (35%), Gaps = 65/355 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             + K  E   + I+ ++  +G+ G GGA F T +K    P   ++    +++NA E EP
Sbjct: 113 ATLVKECELSSEEIVKKIAEAGIVGLGGACFPTQVKLCPPPSFKAEC---VIINAVECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      ++ G  I   A+  + AFI +        E              L
Sbjct: 170 YLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIE--------------L 215

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
            +    GY   I V      Y  G E  L++++  K+       P             V 
Sbjct: 216 MTKVASGYA-GIEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALPISTGA-------VVQ 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   ++          +      ++ +++G  V  P      +     +LI  
Sbjct: 267 NVGTAFAVYQAVQ----------KNKPLFERVITVTGKSVAKPSNFLARIGTPMKQLI-D 315

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG+    ++   VI GG          M  A+++     E+ +  G++ +++M++   
Sbjct: 316 ACGGL---PEDTGKVIGGGP--------MMGKALVN----TEVPTAKGSSGILIMNQKEA 360

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERL-VKGIAQKREIDLLYE 380
                         ++C +C  C       +   ++  L   G  ++ E + + +
Sbjct: 361 KRGEA---------QTCIRCAKCVSACPMGLEPYLLGALSENGDFERMEKERIMD 406


>gi|237653892|ref|YP_002890206.1| electron transport complex protein RnfC [Thauera sp. MZ1T]
 gi|237625139|gb|ACR01829.1| electron transport complex, RnfABCDGE type, C subunit [Thauera sp.
           MZ1T]
          Length = 573

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 99/318 (31%), Gaps = 62/318 (19%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
            D + + V+ +G+ G GGA F T  K   M      +   LV+N  E EP    D  +MR
Sbjct: 124 PDEVRDFVRDAGVVGLGGAVFPTHQK---MRPGSGGKTRTLVLNGAECEPFITCDDMLMR 180

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                ++ G  I    + A    I +         +++ AV                   
Sbjct: 181 ERADGIVSGAAILRHMLQAEEVLIGIEDNKPEAIAAMRQAVAAAGEH------------- 227

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            + V      Y  G    L+  L G +           + G+        NV +   V  
Sbjct: 228 -MEVVAVPTRYPAGGAKQLIRVLTGIEV---PHGERSTDYGV-----QCFNVGTAYSVHE 278

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            L  G              +++ +++G+V  P   E  +    DEL+ + CG       +
Sbjct: 279 ALELG----------RPLVSRIVTVAGNVERPGNYEVLIGTPMDELV-RLCG----PRAD 323

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF 339
              ++ GG  +                               V+  +  ++ A  +L   
Sbjct: 324 TRFLVMGGPMMGV--RMPAFDVP-------------------VVKATNCVLAANDKLFPP 362

Query: 340 YKHE-SCGQCTPCREGTG 356
              E  C +CT C +   
Sbjct: 363 APPEQPCIRCTECAKACP 380


>gi|77917879|ref|YP_355694.1| NADH:ubiquinone oxidoreductase subunit RnfC [Pelobacter
           carbinolicus DSM 2380]
 gi|77543962|gb|ABA87524.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Pelobacter
           carbinolicus DSM 2380]
          Length = 437

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 108/340 (31%), Gaps = 51/340 (15%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
             +++ ++ +G+ G GGA F + +K         D    ++VNA E EP    DR  +  
Sbjct: 122 AAMLDRIREAGVVGMGGAAFPSHVKLDPPRDKTID---TVIVNAVECEPWLTADRRTLLE 178

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               ++ G  +      A   +I +          L      C   G             
Sbjct: 179 RMEKVLTGIEVLQKITDADHVWIGMEDNQPDAAALLAP---HCRQRG------------- 222

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +      Y  G E  L+ ++ G++   R     P +VG+      V NV ++A +   
Sbjct: 223 IGLAVLPAKYPQGAERQLIYAVTGRRVPARG---LPMDVGV-----LVQNVGTVAALTDA 274

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + R           +  G         V +P  +   +      L+E HCG        L
Sbjct: 275 VTRQRPLIERMVTVSGPG---------VVHPQNLRVRIGTPIAHLLE-HCGLRGEPAKVL 324

Query: 281 LAVIPGGSSVPCLPAGQMRGA------IMDYDGLKEMGSGLGTAAVIVMDRSTDI----I 330
           L     G++   L    +RG                +GS +     +       +     
Sbjct: 325 LGGPMMGTAQHTLAVPVLRGTSGVLAFRRQDQTTAAIGSCVRCGRCVAACPMHLMPTFIA 384

Query: 331 KAIWR----LSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
               R    L+  +   +C +C  C       + +++ + 
Sbjct: 385 DYARRDELALAERFAARNCIECGSCSFVCPAGIPLVQSIR 424


>gi|329123232|ref|ZP_08251800.1| electron transport complex protein RnfC [Haemophilus aegyptius ATCC
           11116]
 gi|327471441|gb|EGF16889.1| electron transport complex protein RnfC [Haemophilus aegyptius ATCC
           11116]
          Length = 707

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSPEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI V      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISVRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAVINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|148825771|ref|YP_001290524.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittEE]
 gi|229845220|ref|ZP_04465353.1| electron transport complex protein RnfC [Haemophilus influenzae
           6P18H1]
 gi|229847306|ref|ZP_04467408.1| electron transport complex protein RnfC [Haemophilus influenzae
           7P49H1]
 gi|166225092|sp|A5UBJ0|RNFC_HAEIE RecName: Full=Electron transport complex protein rnfC
 gi|148715931|gb|ABQ98141.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittEE]
 gi|229809731|gb|EEP45455.1| electron transport complex protein RnfC [Haemophilus influenzae
           7P49H1]
 gi|229811815|gb|EEP47511.1| electron transport complex protein RnfC [Haemophilus influenzae
           6P18H1]
 gi|309972919|gb|ADO96120.1| Electron transport complex protein RnfC [Haemophilus influenzae
           R2846]
          Length = 651

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSPEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI V      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISVRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAVINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|225376079|ref|ZP_03753300.1| hypothetical protein ROSEINA2194_01716 [Roseburia inulinivorans DSM
           16841]
 gi|83596379|gb|ABC25536.1| PduS [Roseburia inulinivorans DSM 16841]
 gi|225212099|gb|EEG94453.1| hypothetical protein ROSEINA2194_01716 [Roseburia inulinivorans DSM
           16841]
          Length = 441

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 109/323 (33%), Gaps = 57/323 (17%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
              D + N  + +G+ G GGAGF    K +       ++   +++N  E EP     R +
Sbjct: 1   MLIDELKNIARNNGIVGAGGAGFPAYAKMT-------EKADTVILNCVECEPLLKLHRQL 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           +      +I+       + GA  A I ++ E++   ++++  +               G 
Sbjct: 54  LATHTEEIIQMLDEVRESFGAKEAVIGIKSEYVTTIKAIEEVI---------------GD 98

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
             ++ +     AY  G+E  L+    G+  +P   P              V NVE++  +
Sbjct: 99  FPNVRICALKAAYPMGDEVVLIYEATGRVIKPGGLPI--------DENVVVYNVETMYNL 150

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              +       +          KL SI G +++P TV   +  T  E I           
Sbjct: 151 YRAVHLNIPVTN----------KLVSIVGEIDHPLTVRVPLGTTVKEAISLAGKITVEDP 200

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
               A + GG  +  L                       T A+I++ +   ++  + +  
Sbjct: 201 ----AYVMGGPMMGRLGTENTVIT-------------KTTNAIIILPKDHHVVVRMEKNL 243

Query: 338 VFYKHESCGQCTPCREGTGWMMR 360
              K  +   C  CR  T    R
Sbjct: 244 DIEKRRASSSCCQCRTCTDMCSR 266


>gi|188589203|ref|YP_001921226.1| ethanolamine utilization Fe-S center protein eut [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499484|gb|ACD52620.1| ethanolamine utilization Fe-S center protein eut [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 441

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 118/346 (34%), Gaps = 75/346 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +        +  Y++VN  E EP    D+ +M  +   L+           A 
Sbjct: 22  FPTHVKLNA-------KVEYVIVNGAECEPLLKVDQQLMAEKSAELLYALNKIVEQTEAT 74

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++G++    ++L               N KLG    + +      Y  G+E   +
Sbjct: 75  KGVIALKGKYKSAMKNL---------------NEKLGEYSKLELFELGNFYPAGDEQITV 119

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             +  K+  P  +   P NVG+      V NVE++  +   L                  
Sbjct: 120 YEVT-KRVVP--EGGIPLNVGV-----IVINVETLLNLYNALE-----------GKPVTE 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +I+G V  P TV+  + I+  + +E   G +   ++    +I GG  +  L     R
Sbjct: 161 KYLTITGEVKNPITVKVPIGISVRQALELAGGTLIDEFE----IIDGGPMMGKLIEDIDR 216

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR---LSVFYKHESCGQCTPCRE--- 353
               +            T  +IV+ +S +I+ +  R     +     +C  C+ C E   
Sbjct: 217 PIKKN------------TKGLIVIPKSHNIVVSKKRNIQAMLKQARAACCHCSMCTEVCP 264

Query: 354 ----GTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICAL 393
               G       M R+    G   K  +     +       + C L
Sbjct: 265 RHLLGHKLEPDKMMRIASYGGTCSKEILPTASFLC------SECGL 304


>gi|288940310|ref|YP_003442550.1| RnfABCDGE type electron transport complex subunit C [Allochromatium
           vinosum DSM 180]
 gi|288895682|gb|ADC61518.1| electron transport complex, RnfABCDGE type, C subunit
           [Allochromatium vinosum DSM 180]
          Length = 528

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 60/350 (17%), Positives = 114/350 (32%), Gaps = 60/350 (17%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +    +     I   ++ +G+ G GGA F T +K +            L++N  E EP  
Sbjct: 128 LADYPQLDPALIRERIRWAGVVGMGGASFPTSVKLT---PGTDREIQTLIINGAECEPYI 184

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +MR     ++EG  I    +      I +         ++Q A+      G    
Sbjct: 185 TCDDRLMRERAAHILEGVRIMHHLLRVRTVLIGIEDNKPEAISAMQLALAATDMGGYT-- 242

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                      +      Y  G E  L+  L GK+         PA +G+        NV
Sbjct: 243 ----------EIVPIPTLYPSGGEKQLIRILTGKEV---PTSGIPAQIGI-----VCQNV 284

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            + A V   +  G    +          ++ +++G  +  P  +E  +    + LI   C
Sbjct: 285 GTAAAVADAVLEGKPLIA----------RVVTVTGRAIAEPRNLEVPVGTPIEHLI-AQC 333

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GG R     L   + GG  +               +    +         +  + + D  
Sbjct: 334 GGYRETPRKL---VCGGPMMGF----------ELRESATPITKATNCVLALAPEEAPDPG 380

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
            A+           C +C  C E      R++ + +   A+ +++D + +
Sbjct: 381 PALA----------CIRCGRCAEVCP--TRLLPQQMYWNARAKDLDRVQD 418


>gi|240948590|ref|ZP_04752963.1| electron transport complex protein RnfC [Actinobacillus minor
           NM305]
 gi|240297098|gb|EER47669.1| electron transport complex protein RnfC [Actinobacillus minor
           NM305]
          Length = 793

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 121/388 (31%), Gaps = 76/388 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             ++  L+     I+ +V   G+ G GGA F T  K  F  K C      L++N  E EP
Sbjct: 130 QPIEDFLQLTSGEIVEKVYRYGIAGLGGAVFPTASKLHFADKRC----KVLIINGAECEP 185

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     LIEG  I  + +      I +     +  ++++ A+         
Sbjct: 186 YITCDDRLMQEYADELIEGIRILRYVLRPEEVVIAIEDNKPKAIQAVEKALKGAN----- 240

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     D+ V      Y  G    L++ L G +            +G+      ++
Sbjct: 241 ----------DMFVRAIPTQYPSGASDQLVQILTGLEI---PYGKRTIEMGI-----VMH 282

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   +                  ++ +++G  +     V   +      L+E+
Sbjct: 283 NVGTALAVKRAIIDDEPLI----------ERIVTLTGDKIRNKGNVWARLGTPIIHLLEQ 332

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                    D    V  GG     +              L  + S +   A  ++     
Sbjct: 333 VD----YQADKRFPVFLGGPMTGFI--------------LPSLQSPITKTANCIIAPDH- 373

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
                +  +      +C +C+ C +      + + +    +    ++  +  Y +   IE
Sbjct: 374 -----FEYAPPEDERACIRCSSCSDACPVGLLPQQLYWFARSEDHEKSKE--YHLDACIE 426

Query: 387 GRTICALGDAAAWPIQG---LIKNFRPL 411
               C      A+       LI+ FR  
Sbjct: 427 ----CG---VCAYVCPSYIPLIQYFRQE 447


>gi|168216797|ref|ZP_02642422.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens NCTC 8239]
 gi|182381000|gb|EDT78479.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens NCTC 8239]
          Length = 436

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E     ++  VK  G+ G GGA F   +K +           Y+++N+ E EP    D  
Sbjct: 118 ELSLKDVVKLVKDYGIVGLGGATFPCHVKLNV---KEDKEIKYIIINSAECEPYLTCDHR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M      +I G  I          +I +    +   +  +               S LG
Sbjct: 175 VMLEYTEEIISGLRILLELFPKALIYIGIEDNKLNAIDKFK---------------SILG 219

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I V      Y  G E  L+ +L   +         P ++G       V NV +I  
Sbjct: 220 EDNKIKVMPLKSKYPQGSEKHLIYALTKLQV---PSGKLPLDIG-----CIVFNVSTIYQ 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   L  G               ++ +++G  + +P  +   +     ++IE  CGG   
Sbjct: 272 LYNSLINGLPLT----------ERIITVTGDSIRFPKNLRVKIGTPVKDIIE-FCGGFIN 320

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             +    +I GG  +    A       +            GT+ ++ + +  D       
Sbjct: 321 KPNK---IILGGPMMG--TAINSLDLPITK----------GTSGILCLSKVDD------- 358

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
               +    C +C  C      
Sbjct: 359 ----FPKSHCIRCGKCLNSCPM 376


>gi|146306434|ref|YP_001186899.1| electron transport complex protein RnfC [Pseudomonas mendocina ymp]
 gi|145574635|gb|ABP84167.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas
           mendocina ymp]
          Length = 944

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 109/364 (29%), Gaps = 71/364 (19%)

Query: 15  LQGKSLSDSMS---RGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
           +    L + +       +             ++  ++ +G+ G GGAGF T +K +  P 
Sbjct: 105 IDSDGLDEWIELKPHADYR------HMEPAELLALIREAGISGLGGAGFPTAVKLTARPT 158

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
                 H L++N  E EP    D  +MR     L+ G  I    I      I +      
Sbjct: 159 QK---IHTLIINGTECEPYITADDLLMRERAGELVSGIDILVQLIQPDHVLIGIEDNKPE 215

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              +++ A  E                    V      Y  G E  L++ L G +     
Sbjct: 216 AIAAVRGACSER----------------SYQVRVFPTKYPSGGEKQLIQILTGVEV---P 256

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
               PA++G+        NV +   +   +  G           +R T L      +  P
Sbjct: 257 SGGLPADIGI-----LCQNVGTCTAIHDAVVLGKPLI-------SRITTLTG--EALARP 302

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             VE  +     EL+E            L  +I GG  +            ++   +K  
Sbjct: 303 GNVEALLGTPVGELLEFA----ELDTSKLNRLIMGGPMMGF------TLPSLEVPLIKTS 352

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGI 369
              L + AV +      +               C +C  C E      + + +     G 
Sbjct: 353 NCLLASTAVELPPPPPAM--------------PCIRCGECAEACPASLLPQQLHFFALGQ 398

Query: 370 AQKR 373
             ++
Sbjct: 399 EHEQ 402


>gi|260582611|ref|ZP_05850400.1| electron transport complex protein RnfC [Haemophilus influenzae
           NT127]
 gi|260094283|gb|EEW78182.1| electron transport complex protein RnfC [Haemophilus influenzae
           NT127]
          Length = 645

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSPEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGARSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAIINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPKAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|145637714|ref|ZP_01793367.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittHH]
 gi|145269116|gb|EDK09066.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittHH]
          Length = 561

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 106 TLSPEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 161

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 162 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 209

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 210 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGARSSSIGV-----LMQNVGTMFA 258

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 259 IKRAIINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 304

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 305 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 344

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 345 YAEPKAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 401

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 402 VCPSHIP---LIQYFRQE 416


>gi|237738936|ref|ZP_04569417.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           2_1_31]
 gi|229423536|gb|EEO38583.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           2_1_31]
          Length = 435

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 136/384 (35%), Gaps = 71/384 (18%)

Query: 29  WDNVDKI---LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI       +  +++ ++  G+ G GGA F T +K +  P    D    L++N  
Sbjct: 106 WAELTKIANWETADKKELLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 162

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P ++IEG  I    +     ++ +        ES++ A +    
Sbjct: 163 ECEPYLNSDNRLMLENPSSIIEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKAAE---- 218

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++S+  ++         P+ VG+    
Sbjct: 219 --------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 259

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   +  G               K+ +++G  +  P  ++ ++   F  
Sbjct: 260 -VVQNTGTTAAIYEAVVNG----------KPLIEKVVTVTGKAIKNPKNLKVAIGTPFSY 308

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++  HCG  R   + L   + GG          M  A M     +E     GT+ ++ + 
Sbjct: 309 IL-DHCGINRDEMERL---VMGGP--------MMGLAQMT----EEATVVKGTSGLLALT 352

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
                          YK ++C  C+ C       +   + +RL      +      + + 
Sbjct: 353 NEE---------MRPYKTKACISCSKCVSACPMGLAPLMFDRLAAAKEYEAMAG--HNLM 401

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 402 DCIECGS-CAYICPANRPLAEAIK 424


>gi|188587192|ref|YP_001918737.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351879|gb|ACB86149.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 440

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 85/257 (33%), Gaps = 40/257 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + +   +K SG+ G GGA F T     ++    S    YL++N  E EP    D  
Sbjct: 118 KLSDEELKELLKDSGIAGMGGAAFPT-----YVNVNQSQPIEYLLLNGAECEPYLTCDHR 172

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M   P  LI+G  I    IGA   +I +        E L     E              
Sbjct: 173 QMIEMPEKLIKGAEILMRIIGAKKCYIGIETNKPDAIEVLSEQTKELE------------ 220

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              ++ V   A  Y  G ++ L+ ++   +  PR      A +G       V NV +   
Sbjct: 221 ---NMEVVPLASKYPQGYKSHLINAITD-RKVPRG--ARSAELG-----CIVRNVGTTIA 269

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           V          Y     E     ++ ++SG  +  P      +      ++E+       
Sbjct: 270 V----------YEAVVYEKPLIERVVTVSGPKIPQPGNFSIRIGTPISHILEQCEIEDIS 319

Query: 276 GWDNLLAVIPGGSSVPC 292
             +    VI GG     
Sbjct: 320 TLEGCK-VILGGPMTGM 335


>gi|294101119|ref|YP_003552977.1| electron transport complex, RnfABCDGE type, C subunit
           [Aminobacterium colombiense DSM 12261]
 gi|293616099|gb|ADE56253.1| electron transport complex, RnfABCDGE type, C subunit
           [Aminobacterium colombiense DSM 12261]
          Length = 440

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 103/322 (31%), Gaps = 62/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   D +   +K +G+ G GGA F   +K +       D    +++N  E EP    D  
Sbjct: 118 DLAPDELRAIIKDAGIVGMGGACFPAHIKLTPPADRPIDH---VIINGAECEPYLTSDYR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  EP  + EG  I           + +          +  A      +          
Sbjct: 175 MMLEEPDKIAEGARILLQIFPQAHLHMAIEDNKPEAIRKMTEAFKGIDRA---------- 224

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 V      Y  G E  L+ ++ G +  P  K   PA+ G       V N  ++  
Sbjct: 225 -----SVDVLKTKYPQGGEKQLIFAVAG-REVPSGK--LPADAG-----CVVTNTYTVYE 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G              +++ ++SG  V  P  +   +  +F E+IE   G +  
Sbjct: 272 IRNAVVTG----------RTSLSRIVTVSGDAVATPKNLRVRLGTSFREVIEAAGGFVTP 321

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L     GG  +            M  + L ++    GT+ +I +      +     
Sbjct: 322 PIKVLA----GGPMMG-----------MSINSL-DVPVVKGTSGIIALSEKAAPLN---- 361

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                +  SC +C  C E    
Sbjct: 362 -----EEYSCIRCGRCVEACPM 378


>gi|227872306|ref|ZP_03990663.1| respiratory-chain NADH dehydrogenase family protein [Oribacterium
           sinus F0268]
 gi|227841850|gb|EEJ52123.1| respiratory-chain NADH dehydrogenase family protein [Oribacterium
           sinus F0268]
          Length = 511

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 60/282 (21%), Positives = 97/282 (34%), Gaps = 44/282 (15%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           +  ++ +KA+G+ G GGAGF T +K +   K       Y++VNA E EP    +   +  
Sbjct: 99  ENTLDLIKAAGIVGMGGAGFPTAVKLNIDLK-----GGYILVNAAECEPLLEHNMKQIME 153

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           +P   + G         A    I ++ +   E +             LL    K     +
Sbjct: 154 QPEKTMRGIDYCMKVTNAAKGVIAIKKKHEEEIKV------------LLSLQEKFP---N 198

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I +H     Y  GEE A++  + GK   P    P  A+         V NVE+   +   
Sbjct: 199 ISIHLLPDIYPMGEERAVVREVLGK-LLPPTSLPSEADS-------VVINVETCLRIAEA 250

Query: 221 LRRGASWY---SGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
           +      +      G +  +GTK             ++  +  T  ELIE   G      
Sbjct: 251 IEDKKPCFLKNISVGGKLKKGTK---------TQVFMDVPIGTTVGELIEMAGGIDGEYG 301

Query: 278 DNLLAVIPGG----SSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
           + +L     G     S P             +  LK    G+
Sbjct: 302 EIVLGGPFTGHAVELSTPITKTSGGILVTEPFKDLKGAKMGI 343


>gi|332525143|ref|ZP_08401320.1| electron transport complex, RnfABCDGE type, C subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332108429|gb|EGJ09653.1| electron transport complex, RnfABCDGE type, C subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 462

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 63/331 (19%), Positives = 103/331 (31%), Gaps = 57/331 (17%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           W     I     D I+  V  +GL G GGA F T  K    P+      H LV+N  E E
Sbjct: 116 WGVARDIDAMTPDEILQAVWDAGLVGLGGAAFPTHAKLKVPPQAK---VHTLVINGCECE 172

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M  E   L+ G  ++  A GA  A + +         +++AA+       +
Sbjct: 173 PYLTCDHRTMVEESAALVRGIALSMRATGAVRAIVGIEDNKPDAVAAVKAAIAAAGLENV 232

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                                Y  G E  L+ SL G +         P ++G+      +
Sbjct: 233 FAE-------------AVPTKYPQGSEKMLIMSLFGVEI---PSGQLPVSLGM-----VM 271

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           NNV ++A +  +L  G             G         V  P      +      +++ 
Sbjct: 272 NNVGTMAAIGKLLPAGQGLTERVVTIAGPG---------VVRPGDYRVPLGTPISFVLDF 322

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL--GTAAVIVMDRS 326
              G      +   ++ GG  +                 +  + + +  G + V+V  R 
Sbjct: 323 A--GAPRDATSACQLVLGGPMMG--------------QSVAALDTPVTKGVSGVLVFRRE 366

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
               +   R         C +C  C E    
Sbjct: 367 DMAERDDRRTY------PCIKCGQCVESCPM 391


>gi|145635459|ref|ZP_01791160.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittAA]
 gi|145267333|gb|EDK07336.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittAA]
          Length = 868

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSPEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAIINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPKAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|237714547|ref|ZP_04545028.1| Na+ transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           D1]
 gi|262406413|ref|ZP_06082962.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           2_1_22]
 gi|293370174|ref|ZP_06616734.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|294643291|ref|ZP_06721117.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           ovatus SD CC 2a]
 gi|294806485|ref|ZP_06765326.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298481059|ref|ZP_06999253.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. D22]
 gi|229445316|gb|EEO51107.1| Na+ transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           D1]
 gi|262355116|gb|EEZ04207.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           2_1_22]
 gi|292634671|gb|EFF53200.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|292641414|gb|EFF59606.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           ovatus SD CC 2a]
 gi|294446348|gb|EFG14974.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295083950|emb|CBK65473.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           xylanisolvens XB1A]
 gi|298272633|gb|EFI14200.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. D22]
          Length = 445

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 116/330 (35%), Gaps = 62/330 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + K  E   + I+ ++  +G+ G GGA F T +K    P   ++    +++NA E EP  
Sbjct: 115 LVKECELSAEEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKAEC---VIINAVECEPYL 171

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M      ++ G  I   A+  + AFI +        E +   V   YA      
Sbjct: 172 TADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIELMTK-VASSYAG----- 225

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I V      Y  G E  L++++  K+       P             V NV
Sbjct: 226 ---------IEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALPISTGA-------VVQNV 268

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +   V   ++          +      ++ +++G  V  P      +     +LI   C
Sbjct: 269 GTAFAVYEAVQ----------KNKPLFERVITVTGKSVAKPSNFLARIGTPMKQLI-DAC 317

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GG+    ++   VI GG          M  A+++     E+ +  G++ +++M++     
Sbjct: 318 GGL---PEDTGKVIGGGP--------MMGKALVNI----EVPTAKGSSGILIMNQKEAKR 362

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                       ++C +C  C       + 
Sbjct: 363 GEA---------QTCIRCAKCVSACPMGLE 383


>gi|262037146|ref|ZP_06010638.1| electron transport complex protein RnfC [Leptotrichia goodfellowii
           F0264]
 gi|261748834|gb|EEY36181.1| electron transport complex protein RnfC [Leptotrichia goodfellowii
           F0264]
          Length = 441

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 107/346 (30%), Gaps = 79/346 (22%)

Query: 18  KSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           +SLS+   R                I++ +K SG+ G GGA F T +K+    KV     
Sbjct: 115 ESLSEYTKR---------------EILDVIKESGIVGEGGAQFPTYVKYDIGDKVVD--- 156

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
              ++N  E EP    D  IM        +G  I    +      I +  E     E   
Sbjct: 157 -TFILNGSECEPYLTADYTIMNEWTEQFFDGIKIVEKLLNPKKTVIGIEEENRELVERF- 214

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
                          S+     +I +     AY  G E  L++++ GK+ +   K   P 
Sbjct: 215 ------------SEVSRKKNMTNIEICVLPTAYPQGSELQLIKTITGKEIK---KGNLPV 259

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEE 256
           N G+      V+NV ++  V      G               ++ +ISG           
Sbjct: 260 NYGV-----VVSNVGTVKSVYDAFIEG----------KPLIERVVTISGEKTEEKGNYLI 304

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
                   +IEK         +    +I GG  +           I             G
Sbjct: 305 KTGTPLGHIIEKI------NPEKDAKIIFGGPMMGEEVKDMNVPVI------------KG 346

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
           T+ ++ +  + D I+            +C  C  C +     +  M
Sbjct: 347 TSGILFLSGNIDNIE----------RNNCISCGYCVDACPMGLMPM 382


>gi|301170440|emb|CBW30047.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Haemophilus influenzae 10810]
          Length = 706

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSPEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAVINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQVLSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|260174483|ref|ZP_05760895.1| Na+-transporting NADH:ubiquinone oxidoreductase, electron transport
           complex protein rnfC [Bacteroides sp. D2]
 gi|315922750|ref|ZP_07918990.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           D2]
 gi|313696625|gb|EFS33460.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           D2]
          Length = 445

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 116/332 (34%), Gaps = 62/332 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             + K  E   + I+ ++  +G+ G GGA F T +K    P   ++    +++NA E EP
Sbjct: 113 ATLVKECELSAEEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKAEC---VIINAVECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      ++ G  I   A+  + AFI +        E +   V   YA    
Sbjct: 170 YLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIELMTK-VASSYAG--- 225

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                      I V      Y  G E  L++++  K+       P             V 
Sbjct: 226 -----------IEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALPISTGA-------VVQ 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   ++          +      ++ +++G  V  P      +     +LI  
Sbjct: 267 NVGTAFAVYEAVQ----------KNKPLFERVITVTGKSVAKPSNFLARIGTPMKQLI-D 315

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG+    ++   VI GG          M  A+++     E+ +  G++ +++M+R   
Sbjct: 316 ACGGL---PEDTGKVIGGGP--------MMGKALVNI----EVPTAKGSSGILIMNRKEA 360

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                         ++C +C  C       + 
Sbjct: 361 KRGEA---------QTCIRCAKCVSACPMGLE 383


>gi|218282321|ref|ZP_03488611.1| hypothetical protein EUBIFOR_01193 [Eubacterium biforme DSM 3989]
 gi|218216694|gb|EEC90232.1| hypothetical protein EUBIFOR_01193 [Eubacterium biforme DSM 3989]
          Length = 436

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 108/335 (32%), Gaps = 62/335 (18%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            R+  ++ VK +G+ G GGAGF T +K+        D   Y+++NA E EP    D   +
Sbjct: 126 TREECVDFVKNAGIVGLGGAGFPTYVKYM-----KPDGVDYVLINAVECEPYITADYRSV 180

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             +   L+ G  I      A   +I ++       E +++A+ +                
Sbjct: 181 MDDAQDLVTGAKIMKKMAEAKTVYICIKESHPDLIEKVKSALQDAAG------------- 227

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             + V+     Y  G E  L+  +  K+         PA  G       + N  S   + 
Sbjct: 228 --VEVYPVPDVYPMGWERVLVREVLHKEY-----GGLPAEAG-----AIIGNASSAIAIA 275

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
               +G +             K  ++SG  V  P  V   + +   E+IE  CGG     
Sbjct: 276 KAFEKGEAITQ----------KNLTVSGECVKDPHNVCVPVGMPVSEIIE-ACGGYTQDT 324

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD--------- 328
             L   I GG  +       M       + L  + +     A+  +              
Sbjct: 325 VRL---ISGGPMMGKTIVNDMFVVDRAMNALTVLPAA-NDDAIACLRCGKCSDHCPSGLQ 380

Query: 329 IIKAIWRLSVFYKHE-------SCGQCTPCREGTG 356
            ++    L      E       SC +C  C     
Sbjct: 381 PVRITAALKANDVDEMSKRGVMSCIECGMCTYICP 415


>gi|83644718|ref|YP_433153.1| electron transport complex protein RnfC [Hahella chejuensis KCTC
           2396]
 gi|83632761|gb|ABC28728.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Hahella
           chejuensis KCTC 2396]
          Length = 821

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 68/330 (20%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  V+  G+ G GGAGF T +K   +    +D+ + L++NA E 
Sbjct: 118 DYRAL------SPEQLLERVRQGGIAGMGGAGFPTAIK---LHPPRNDKVNALILNAAEC 168

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR     +I G  I +  +      I +         +LQ A        
Sbjct: 169 EPYITADDMLMRERADEVIRGMEIMAQLLEPEECLIGIEDNKPEAIAALQQA-------- 220

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                        I V      Y  G E  L++ L G +         PA++G+      
Sbjct: 221 --------ASGTHIEVVVIPTKYPSGGEKQLIKILTGLEV---PHGKIPADIGV-----M 264

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
             NV + A V   +R G    S          ++ +++G  V  P   E  +     +L+
Sbjct: 265 CQNVGTAAAVYRAVRFGEPLIS----------RITTVTGDGVATPGNFEVLLGAPMSDLL 314

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           ++         D    +I GG  +                      S       +V   +
Sbjct: 315 QQAG----FDADKTDRLIMGGPMMGF--------------------SLTDLDLPLVKTSN 350

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
             +  +          ++C +C  C E   
Sbjct: 351 CIMAVSAKEFPRPDPAQACIRCGLCAEACP 380


>gi|291460867|ref|ZP_06025673.2| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380312|gb|EFE87830.1| electron transport complex, RnfABCDGE type, C subunit
           [Fusobacterium periodonticum ATCC 33693]
          Length = 441

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 136/384 (35%), Gaps = 71/384 (18%)

Query: 29  WDNVDKI---LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI       +  +++ ++  G+ G GGA F T +K +  P    D    L++N  
Sbjct: 112 WAELTKIANWETADKKELLDIIREKGIVGIGGATFPTHVKLNPPPNTKLDS---LILNGA 168

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P ++IEG  I    +     ++ +        ES++ A +    
Sbjct: 169 ECEPYLNSDNRLMLENPKSIIEGIKIIKKILNVPDVYVGIEDNKPEAIESMKKASE---- 224

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++S+  ++         P+ VG+    
Sbjct: 225 --------GTG----IDIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAVGV---- 265

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   +  G               K+ +++G  +  P  ++ ++   F  
Sbjct: 266 -VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVTGKAIKNPKNLKVAIGTPFSY 314

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++  HCG  R   + L   + GG          M  A M     +E     GT+ ++ + 
Sbjct: 315 IL-DHCGINRDEMERL---VMGGP--------MMGLAQMT----EEATVVKGTSGLLALT 358

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
                          YK ++C  C+ C       +   + +RL      +      + + 
Sbjct: 359 NEE---------MRPYKTKACISCSKCVSACPMGLAPLMFDRLAAAKEYEAMAG--HNLM 407

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 408 DCIECGS-CAYICPANRPLAEAIK 430


>gi|307247153|ref|ZP_07529205.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856402|gb|EFM88553.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 684

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      II +V   G+ G GGA F T  K S   K C      L++N  E EP    D 
Sbjct: 136 LTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVLIINGAECEPYITCDD 191

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+   H  +EG  I  + +      + +     +  ++++ A+         GSN   
Sbjct: 192 RLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALK--------GSN--- 240

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +     +      +G+      ++NV ++ 
Sbjct: 241 ----DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMGI-----VMHNVGTVF 288

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  +     V   +      L+E+      
Sbjct: 289 AVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD---- 334

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D+   V  GG     +              L+ + + +   A  ++          +
Sbjct: 335 YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTANCIIAPDH------F 374

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
             +      SC +C+ C +   
Sbjct: 375 EYAPPEPERSCIRCSSCSDACP 396


>gi|307244979|ref|ZP_07527076.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253932|ref|ZP_07535784.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258386|ref|ZP_07540127.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306854144|gb|EFM86352.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863136|gb|EFM95078.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867570|gb|EFM99417.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 725

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      II +V   G+ G GGA F T  K S   K C      L++N  E EP    D 
Sbjct: 136 LTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVLIINGAECEPYITCDD 191

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+   H  +EG  I  + +      + +     +  ++++ A+         GSN   
Sbjct: 192 RLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALK--------GSN--- 240

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +     +      +G+      ++NV ++ 
Sbjct: 241 ----DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMGI-----VMHNVGTVF 288

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  +     V   +      L+E+      
Sbjct: 289 AVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD---- 334

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D+   V  GG     +              L+ + + +   A  ++          +
Sbjct: 335 YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTANCIIAPDH------F 374

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
             +      SC +C+ C +   
Sbjct: 375 EYAPPEPERSCIRCSSCSDACP 396


>gi|303251991|ref|ZP_07338162.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649421|gb|EFL79606.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 729

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      II +V   G+ G GGA F T  K S   K C      L++N  E EP    D 
Sbjct: 136 LTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVLIINGAECEPYITCDD 191

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+   H  +EG  I  + +      + +     +  ++++ A+         GSN   
Sbjct: 192 RLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALK--------GSN--- 240

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +     +      +G+      ++NV ++ 
Sbjct: 241 ----DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMGI-----VMHNVGTVF 288

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  +     V   +      L+E+      
Sbjct: 289 AVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD---- 334

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D+   V  GG     +              L+ + + +   A  ++          +
Sbjct: 335 YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTANCIIAPDH------F 374

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
             +      SC +C+ C +   
Sbjct: 375 EYAPPEPERSCIRCSSCSDACP 396


>gi|251780974|ref|ZP_04823894.1| ethanolamine utilization Fe-S center protein eut [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243085289|gb|EES51179.1| ethanolamine utilization Fe-S center protein eut [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 441

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 117/346 (33%), Gaps = 75/346 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +        +  Y++VN  E EP    D+ +M  +   L+           A 
Sbjct: 22  FPTHVKLNA-------KVEYVIVNGAECEPLLKVDQQLMAEKSSELLYALNKIVEQTEAT 74

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++G++    ++L                 KLG    + +      Y  G+E   +
Sbjct: 75  KGVIALKGKYKSAMKNLSE---------------KLGEYPKLELFELGNFYPAGDEQITV 119

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             +  K+  P  +   P NVG+      V NVE++  +   L                  
Sbjct: 120 YEVT-KRVVP--EGGIPLNVGV-----IVINVETLLNLYNALE-----------GKPVTE 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +I+G V  P TV+  + I+  + +E   G +   ++    +I GG  +  L     R
Sbjct: 161 KYLTITGEVKNPITVKVPIGISVRQALELAGGTLIDDFE----IIDGGPMMGKLIEDIDR 216

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR---LSVFYKHESCGQCTPCRE--- 353
               +            T  +IV+ +S +I+ +  R     +     +C  C+ C E   
Sbjct: 217 PIKKN------------TKGLIVIPKSHNIVVSKKRNIQAMLKQARAACCHCSMCTEVCP 264

Query: 354 ----GTGWMMRVMERLVK--GIAQKREIDLLYEVSKNIEGRTICAL 393
               G       M R+    G   K  +     +       + C L
Sbjct: 265 RHLLGHKLEPDKMMRIASYGGTCSKEILPTASFLC------SECGL 304


>gi|299146146|ref|ZP_07039214.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. 3_1_23]
 gi|298516637|gb|EFI40518.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. 3_1_23]
          Length = 445

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 116/332 (34%), Gaps = 62/332 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             + K  E   + I+ ++  +G+ G GGA F T +K    P   ++    +++NA E EP
Sbjct: 113 ATLVKECELSAEEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKAEC---VIINAVECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      ++ G  I   A+  + AFI +        E +   V   YA    
Sbjct: 170 YLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIELMTK-VASSYAG--- 225

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                      I V      Y  G E  L++++  K+       P             V 
Sbjct: 226 -----------IEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALPISTGA-------VVQ 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   ++          +      ++ +++G  V  P      +     +LI  
Sbjct: 267 NVGTAFAVYEAVQ----------KNKPLFERVITVTGKSVAKPSNFLARIGTPMKQLI-D 315

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG+    ++   VI GG          M  A+++     E+ +  G++ +++M+R   
Sbjct: 316 ACGGL---PEDTGKVIGGGP--------MMGKALVNI----EVPTAKGSSGILIMNRKEA 360

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                         ++C +C  C       + 
Sbjct: 361 KRGEA---------QTCIRCAKCVSACPMGLE 383


>gi|53728861|ref|ZP_00348259.1| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207655|ref|YP_001052880.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae L20]
 gi|126096447|gb|ABN73275.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 770

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      II +V   G+ G GGA F T  K S   K C      L++N  E EP    D 
Sbjct: 136 LTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVLIINGAECEPYITCDD 191

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+   H  +EG  I  + +      + +     +  ++++ A+         GSN   
Sbjct: 192 RLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALK--------GSN--- 240

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +     +      +G+      ++NV ++ 
Sbjct: 241 ----DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMGI-----VMHNVGTVF 288

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  +     V   +      L+E+      
Sbjct: 289 AVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD---- 334

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D+   V  GG     +              L+ + + +   A  ++          +
Sbjct: 335 YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTANCIIAPDH------F 374

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
             +      SC +C+ C +   
Sbjct: 375 EYAPPEPERSCIRCSSCSDACP 396


>gi|168206315|ref|ZP_02632320.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170662230|gb|EDT14913.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 436

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 105/330 (31%), Gaps = 66/330 (20%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +N+    +     ++  VK  G+ G GGA F   +K +           Y+++NA E EP
Sbjct: 111 ENLKYSSKLSLKDVVKLVKDYGIVGLGGATFPCHVKLNV---KEDKEIKYIIINAAECEP 167

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      +I G  I          +I +    +   +  +            
Sbjct: 168 YLTCDHRVMLKYTEEIIGGLRILLELFPKALIYIGIEDNKLNAIDKFK------------ 215

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
              S LG D  I V      Y  G E  L+ +L   +   R     P ++G       V 
Sbjct: 216 ---SILGEDNKIKVMPLKSKYPQGSEKHLIYALTKLQVPSRK---LPLDIG-----CIVF 264

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +I  +   L  G               ++ +++G  + +P  ++  +     ++IE 
Sbjct: 265 NVSTIYQLYASLINGLPLT----------ERIITVTGDSIRFPKNLKVKIGTPVKDIIE- 313

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG          +I GG  +    +       +            GT+ ++ + +   
Sbjct: 314 FCGGFVNKPSK---IILGGPMMG--TSINSLDLPITK----------GTSGIVCLSKVD- 357

Query: 329 IIKAIWRLSVFYKHES-CGQCTPCREGTGW 357
                          S C +C  C      
Sbjct: 358 -----------TSPNSHCIRCGKCLNSCPM 376


>gi|303250916|ref|ZP_07337107.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650222|gb|EFL80387.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 770

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      II +V   G+ G GGA F T  K S   K C      L++N  E EP    D 
Sbjct: 136 LTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVLIINGAECEPYITCDD 191

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+   H  +EG  I  + +      + +     +  ++++ A+         GSN   
Sbjct: 192 RLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALK--------GSN--- 240

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +     +      +G+      ++NV ++ 
Sbjct: 241 ----DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMGI-----VMHNVGTVF 288

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  +     V   +      L+E+      
Sbjct: 289 AVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD---- 334

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D+   V  GG     +              L+ + + +   A  ++          +
Sbjct: 335 YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTANCIIAPDH------F 374

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
             +      SC +C+ C +   
Sbjct: 375 EYAPPEPERSCIRCSSCSDACP 396


>gi|165975623|ref|YP_001651216.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165875724|gb|ABY68772.1| putative iron-sulfur binding NADH dehydrogenase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 770

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      II +V   G+ G GGA F T  K S   K C      L++N  E EP    D 
Sbjct: 136 LTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVLIINGAECEPYITCDD 191

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+   H  +EG  I  + +      + +     +  ++++ A+         GSN   
Sbjct: 192 RLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALK--------GSN--- 240

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +     +      +G+      ++NV ++ 
Sbjct: 241 ----DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMGI-----VMHNVGTVF 288

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  +     V   +      L+E+      
Sbjct: 289 AVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD---- 334

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D+   V  GG     +              L+ + + +   A  ++          +
Sbjct: 335 YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTANCIIAPDH------F 374

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
             +      SC +C+ C +   
Sbjct: 375 EYAPPEPERSCIRCSSCSDACP 396


>gi|78778018|ref|YP_394333.1| glutamate synthase (NADPH) [Sulfurimonas denitrificans DSM 1251]
 gi|78498558|gb|ABB45098.1| Glutamate synthase (NADPH) [Sulfurimonas denitrificans DSM 1251]
          Length = 677

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTGW 357
                YD  +E  + +G   V + D+  D+I+     +  Y+   E+CG+C P R G   
Sbjct: 30  NLPAQYDSHRESKAFIGWDGVALFDKDVDVIRLAMEYAAQYQEYSEACGRCAPGRWGGRI 89

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +   ++++ +G     ++D L E+ K+++  + C +G     PI  L+ +F  +  E I+
Sbjct: 90  LYDQLDKIARGEGSVADLDHLREIGKSMQITSKCEIGKTVPNPILDLMTHFEHVFLECIN 149

Query: 418 QYH 420
           ++ 
Sbjct: 150 EHK 152


>gi|153806623|ref|ZP_01959291.1| hypothetical protein BACCAC_00893 [Bacteroides caccae ATCC 43185]
 gi|149131300|gb|EDM22506.1| hypothetical protein BACCAC_00893 [Bacteroides caccae ATCC 43185]
          Length = 445

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 111/330 (33%), Gaps = 62/330 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + K  +   + I+ ++  +G+ G GGA F T +K    P   ++    +++NA E EP  
Sbjct: 115 LVKECDLSAEEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKAEC---VIINAVECEPYL 171

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M      ++ G  I   A+  + AFI +        + +   V   YA      
Sbjct: 172 TADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIQLMTK-VASSYAG----- 225

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I V      Y  G E  L++++  K+       P             V NV
Sbjct: 226 ---------IEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALPISTGA-------VVQNV 268

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +   V   ++          +      ++ +++G  V  P      +     +LI   C
Sbjct: 269 GTAFAVYEAVQ----------KNKPLFERVITVTGKSVARPSNFLARIGTPMKQLI-DAC 317

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GG+    ++   VI GG  +    A                 +  G++ +++M+R     
Sbjct: 318 GGL---PEDTGKVIGGGPMMG--KALVNIDVP----------TAKGSSGILIMNRKEAKR 362

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                       ++C +C  C       + 
Sbjct: 363 GEA---------QTCIRCAKCVSACPMGLE 383


>gi|307260625|ref|ZP_07542317.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869702|gb|EFN01487.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 770

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      II +V   G+ G GGA F T  K S   K C      L++N  E EP    D 
Sbjct: 136 LTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVLIINGAECEPYITCDD 191

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+   H  +EG  I  + +      + +     +  ++++ A+         GSN   
Sbjct: 192 RLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALK--------GSN--- 240

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +     +      +G+      ++NV ++ 
Sbjct: 241 ----DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMGI-----VMHNVGTVF 288

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  +     V   +      L+E+      
Sbjct: 289 AVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD---- 334

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D+   V  GG     +              L+ + + +   A  ++          +
Sbjct: 335 YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTANCIIAPDH------F 374

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
             +      SC +C+ C +   
Sbjct: 375 EYAPPEPERSCIRCSSCSDACP 396


>gi|223041743|ref|ZP_03611936.1| electron transport complex protein RnfC [Actinobacillus minor 202]
 gi|223017427|gb|EEF15845.1| electron transport complex protein RnfC [Actinobacillus minor 202]
          Length = 571

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 121/388 (31%), Gaps = 76/388 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             ++  L+     I+ +V   G+ G GGA F T  K  F  K C      L++N  E EP
Sbjct: 136 QPIEDFLQLTSGEIVEKVYRYGIAGLGGAVFPTASKLHFADKRC----KVLIINGAECEP 191

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     LIEG  I  + +      I +     +  ++++ A+         
Sbjct: 192 YITCDDRLMQEYADELIEGIRILRYVLRPEEVVIAIEDNKPKAIQAVEKALKGAN----- 246

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     D+ V      Y  G    L++ L G +            +G+      ++
Sbjct: 247 ----------DMFVRAIPTQYPSGASDQLVQILTGLEI---PYGKRTIEMGI-----VMH 288

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   +                  ++ +++G  +     V   +      L+E+
Sbjct: 289 NVGTALAVKRAIIDDEPLI----------ERIVTLTGDKIRNKGNVWARLGTPIIHLLEQ 338

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                    D    V  GG     +              L  + S +   A  ++     
Sbjct: 339 VD----YQADKRFPVFLGGPMTGFI--------------LPSLQSPITKTANCIIAPDH- 379

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
                +  +      +C +C+ C +      + + +    +    ++  +  Y +   IE
Sbjct: 380 -----FEYAPPEDERACIRCSSCSDACPVGLLPQQLYWFARSEDHEKSKE--YHLDACIE 432

Query: 387 GRTICALGDAAAWPIQG---LIKNFRPL 411
               C      A+       LI+ FR  
Sbjct: 433 ----CG---VCAYVCPSYIPLIQYFRQE 453


>gi|319776069|ref|YP_004138557.1| NADH:ubiquinone oxidoreductase subunit RnfC [Haemophilus influenzae
           F3047]
 gi|317450660|emb|CBY86880.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus
           influenzae F3047]
          Length = 651

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 118/378 (31%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSPEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+         G+N    
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQ--------GTN---- 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAVINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDK 332

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +         G  +P L A   +                          +  +      
Sbjct: 333 HFPIFAGGSMMGLELPNLNAPVTKLV------------------------NCLLAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|225571531|ref|ZP_03780527.1| hypothetical protein CLOHYLEM_07629 [Clostridium hylemonae DSM
           15053]
 gi|225159608|gb|EEG72227.1| hypothetical protein CLOHYLEM_07629 [Clostridium hylemonae DSM
           15053]
          Length = 442

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 40/249 (16%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPH 103
           +  VK +G+ G GGAGF TG+K     K       Y++VNA E EPG   +   +  +  
Sbjct: 79  LEMVKEAGIVGMGGAGFPTGVKIGTDLK-----GGYVLVNAAECEPGLRHNIQQIEEQTD 133

Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV 163
             I G         A    I ++ +  +  + L+ A+ E               +  I +
Sbjct: 134 ITIRGLKYCMEVCNASKGIIAIKKKNEKAIQILREAIKE---------------EDSITI 178

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
           H     Y  GEE A++    GK   P  + P  A+         V N E++  +   +  
Sbjct: 179 HLLPDIYPMGEERAVVREALGKLLDP-TQLPSAADA-------VVINCETLLRIAEAIEL 230

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTV-EESMSITFDELIEKHCGGIRGGWDNLLA 282
               Y       ++   +       N P    +  +  +  ++IEK  G      +    
Sbjct: 231 KKPCY-------SKNMTVIGKLNGGNEPHVFMDVPVGTSVGDMIEKAGGIDGTYGE---- 279

Query: 283 VIPGGSSVP 291
           +I GG    
Sbjct: 280 IIMGGPFTG 288


>gi|253568564|ref|ZP_04845975.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           1_1_6]
 gi|251842637|gb|EES70717.1| Na+-transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           1_1_6]
          Length = 445

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 116/330 (35%), Gaps = 62/330 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + K  E   + I+ ++  +G+ G GGA F T +K    P   ++    +++NA E EP  
Sbjct: 115 LVKECELSSEEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKAEC---VIINAVECEPYL 171

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M      ++ G  I   A+  + AFI +        E +   V   YA      
Sbjct: 172 TADHQLMLEHAEEVMVGVSILMKAVKVNKAFIGIENNKPDAIELMTK-VASSYAG----- 225

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I V      Y  G E  L++++  K+       P             V NV
Sbjct: 226 ---------IEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALPISTGA-------VVQNV 268

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +   V   ++          +      ++ +++G  V  P      +     +LI   C
Sbjct: 269 GTAFAVYEAVQ----------KNKPLFERVITVTGKSVTKPSNFLARIGTPMKQLI-DAC 317

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GG+    ++   VI GG          M  A+++     E+ +  G++ +++M++     
Sbjct: 318 GGL---PEDTGKVIGGGP--------MMGKALVNI----EVPTAKGSSGILIMNQKEAKR 362

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                       ++C +C  C       + 
Sbjct: 363 GEA---------QTCIRCAKCVSACPMGLE 383


>gi|322515041|ref|ZP_08068049.1| electron transport complex protein RnfC [Actinobacillus ureae ATCC
           25976]
 gi|322118921|gb|EFX91098.1| electron transport complex protein RnfC [Actinobacillus ureae ATCC
           25976]
          Length = 604

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 108/328 (32%), Gaps = 62/328 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +D  L    D II +V   G+ G GGA FST  K S   K C      L++N  E EP
Sbjct: 130 QPIDDFLTLTSDQIIQKVYQYGIAGLGGAVFSTASKLSLADKRC----KLLIINGAECEP 185

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     LIEG  I  + +      + +     +  +++Q A+         
Sbjct: 186 YITCDDRLMQDYTAELIEGIRILRYVLRPEEVVLAIEDNKPKAIKAIQKALK-------- 237

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                 G D DI V      Y  G    L++ L G +     +      +G+      ++
Sbjct: 238 ------GSD-DIHVQPIPTKYPSGASDQLVQVLTGLEI---PQGKRTIEMGI-----VMH 282

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   +                  ++ +++G  +     V   +      L+E+
Sbjct: 283 NVGTAFAVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQ 332

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                    D+   V  GG     +              LK + + +   A  ++     
Sbjct: 333 VD----YQADSRFPVFLGGPMTGFI--------------LKSLQAPITKTANCIIAPDH- 373

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG 356
                +  +      SC +C+ C +   
Sbjct: 374 -----FEYAPPEPERSCIRCSSCSDACP 396


>gi|298385331|ref|ZP_06994889.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. 1_1_14]
 gi|298261472|gb|EFI04338.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           sp. 1_1_14]
          Length = 445

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 116/330 (35%), Gaps = 62/330 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + K  E   + I+ ++  +G+ G GGA F T +K    P   ++    +++NA E EP  
Sbjct: 115 LVKECELSSEEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKAEC---VIINAVECEPYL 171

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M      ++ G  I   A+  + AFI +        E +   V   YA      
Sbjct: 172 TADHQLMLEHAEEVMVGVSILMKAVKVNKAFIGIENNKPDAIELMTK-VASSYAG----- 225

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I V      Y  G E  L++++  K+       P             V NV
Sbjct: 226 ---------IEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALPISTGA-------VVQNV 268

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +   V   ++          +      ++ +++G  V  P      +     +LI   C
Sbjct: 269 GTAFAVYEAVQ----------KNKPLFERVITVTGKSVTKPSNFLARIGTPMKQLI-DAC 317

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           GG+    ++   VI GG          M  A+++     E+ +  G++ +++M++     
Sbjct: 318 GGL---PEDTGKVIGGGP--------MMGKALVNI----EVPTAKGSSGILIMNQKEAKR 362

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                       ++C +C  C       + 
Sbjct: 363 GEA---------QTCIRCAKCVSACPMGLE 383


>gi|167762909|ref|ZP_02435036.1| hypothetical protein BACSTE_01273 [Bacteroides stercoris ATCC
           43183]
 gi|167699249|gb|EDS15828.1| hypothetical protein BACSTE_01273 [Bacteroides stercoris ATCC
           43183]
          Length = 445

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 65/383 (16%), Positives = 130/383 (33%), Gaps = 73/383 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           D + K      + I+ ++  +G+ G GGA F T +K    P   ++    +++NA E EP
Sbjct: 113 DTLVKECNLTAEEIVKKIADAGIVGLGGACFPTQVKLCPPPAFKAEC---VIINAVECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      ++ G  I   A+  + AFI +        + +        A+G  
Sbjct: 170 YLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIQLMTK-----VAAGYA 224

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
           G          I V      Y  G E  L++++  ++      P              V 
Sbjct: 225 G----------IEVVPLKVQYPQGGEKQLIDAVISRQVAAGALPISTG--------AVVQ 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   ++          +      ++ +++G  ++ P      +     +LI  
Sbjct: 267 NVGTAFAVYQAVQ----------KNKPLFERVITVTGKSLSKPSNFLARIGTPMKQLI-D 315

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG+    ++   +I GG  +    A                 +  G++ +++M+    
Sbjct: 316 ACGGL---PEDTGKIIGGGPMMG--KALVNTDVP----------TAKGSSGILIMND--- 357

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL--YEVSKNIE 386
             K   R  V    + C +C  C       +     L+  ++   + + +   +V   IE
Sbjct: 358 --KEAKRGEV----QPCIRCAKCVSACPMGLEPY--LLATVSAHGDFERVEKEDVMSCIE 409

Query: 387 GRTICALGDAAA---WPIQGLIK 406
               C           P+   I+
Sbjct: 410 ----CGSCQFTCPSNRPLLDYIR 428


>gi|53713889|ref|YP_099881.1| electron transport complex protein RnfC [Bacteroides fragilis
           YCH46]
 gi|60682097|ref|YP_212241.1| electron transport complex protein [Bacteroides fragilis NCTC 9343]
 gi|253567119|ref|ZP_04844570.1| electron transport complex protein RnfC [Bacteroides sp. 3_2_5]
 gi|265764232|ref|ZP_06092800.1| electron transport complex protein RnfC [Bacteroides sp. 2_1_16]
 gi|52216754|dbj|BAD49347.1| Electron transport complex protein RnfC [Bacteroides fragilis
           YCH46]
 gi|60493531|emb|CAH08318.1| electron transport complex protein [Bacteroides fragilis NCTC 9343]
 gi|251944243|gb|EES84752.1| electron transport complex protein RnfC [Bacteroides sp. 3_2_5]
 gi|263256840|gb|EEZ28186.1| electron transport complex protein RnfC [Bacteroides sp. 2_1_16]
 gi|301163567|emb|CBW23118.1| electron transport complex protein [Bacteroides fragilis 638R]
          Length = 445

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 116/347 (33%), Gaps = 64/347 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + G    +S+ R     + K  E   + I+ ++  +G+ G GGA F T +K    P   +
Sbjct: 100 VDGDEWEESIDRS--PELVKECELTSEEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M      ++ G  I   A+  + AFI +        +
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEHAEEVMVGVAILMKAVKVNKAFIGIENNKPDAIQ 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +   V   YA               I V      Y  G E  L++++  K+       P
Sbjct: 215 LMTK-VASSYAG--------------IEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALP 258

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
                        V NV +   V   ++          +      ++ +++G  V  P  
Sbjct: 259 ISTGA-------VVQNVGTAFAVYQAVQ----------KNKPLFERVITVTGKSVAQPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +     +LI   CGG+    ++   +I GG  +    A                 +
Sbjct: 302 FLARIGTPMQQLI-DACGGL---PEDTGKIIGGGPMMG--KALVNTDVP----------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             G++ +++M+R       +           C +C  C       + 
Sbjct: 346 AKGSSGILIMNRKEAKRGEVQN---------CIRCAKCVSACPMGLE 383


>gi|291528935|emb|CBK94521.1| electron transport complex, RnfABCDGE type, C subunit [Eubacterium
           rectale M104/1]
          Length = 443

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 109/328 (33%), Gaps = 60/328 (18%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +++V+ +    ++ II +VK +G+ G GGAGF T +K S       D+  Y++ N  E E
Sbjct: 110 YNSVEDVTALSKEEIIEKVKNAGVVGMGGAGFPTHVKLS---PKEPDKIEYIIANCAECE 166

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M   P  LI G  I           + +        E L            
Sbjct: 167 PYLTSDYRRMLENPEELIGGMKIILQLFDNAKGILGIEDNKPDCIEKLTE---------- 216

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           L  +        I V      Y  G E  L+ +  G+    ++    PA+ G       V
Sbjct: 217 LTKDEP-----RIEVCPLMTKYPQGGERQLIYATTGRAINSKM---LPADAG-----CIV 263

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
           +NVE+I  V   ++ G                       V  P  +  S+  ++ EL+  
Sbjct: 264 DNVETIIAVYNAVKNGQPVLKRIST---------VTGDAVKNPSNILYSIGTSYQELV-D 313

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             GG +   +    +I GG  +    A                          ++  + D
Sbjct: 314 AAGGFKSQPEK---IISGGPMMGF--AMFSLDIPTTKTSSS------------ILCFTHD 356

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG 356
            + A       ++ ++C  C  C E   
Sbjct: 357 EVAA-------FEPQACINCGRCVEACP 377


>gi|117923998|ref|YP_864615.1| electron transport complex, RnfABCDGE type, C subunit
           [Magnetococcus sp. MC-1]
 gi|117607754|gb|ABK43209.1| electron transport complex, RnfABCDGE type, C subunit
           [Magnetococcus sp. MC-1]
          Length = 605

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 117/382 (30%), Gaps = 59/382 (15%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
                           I + V+ +G+ G GGA F + +K S        +   LV+N  E
Sbjct: 116 DGIQGCTDPFSLEPAQIRDAVRHAGIVGLGGATFPSHVKLS---PPGEKKVELLVLNGVE 172

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EP    D  +M      ++ G  I   A+    A I +         +++ AV+     
Sbjct: 173 CEPYLTCDARLMEERSGLIVTGVRIMLHALHCKEAVIGIEDNKPGAIAAMKRAVEGEK-- 230

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                        +I V      Y  G E  L+E L G++         P +VG+     
Sbjct: 231 -------------NISVRVLPVMYPQGSEKQLIEVLTGRQV---PSGGLPIDVGV----- 269

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDEL 265
             +N+ +   +   +  G               ++ +++G  +N P  VE  +  T  +L
Sbjct: 270 VCHNIATAIAIKEAIVDGMPLLK----------RVVTVTGRAINRPANVECLLGTTVGDL 319

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL------KEMGSGLGTAA 319
           + K CGG R     L   + GG  +           +    GL      +   +  G   
Sbjct: 320 L-KQCGGSRSSMAKL---VMGGPMMGVALQSLAAPVVKGTSGLLVLEKQETTDNPEGPCI 375

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHE------------SCGQCTPCREGTGWMMRVMERLVK 367
                 +   +  +     +                 C +C  C       + ++     
Sbjct: 376 RCAKCVNVCPMSLMPNEMAWLAKNDQFDALADHDLFDCIECGTCSYVCPSSIPLVHYFRY 435

Query: 368 GIAQKREIDLLYEVSKNIEGRT 389
           G    +        S  I+ RT
Sbjct: 436 GKFAIQGKKRAKHRSDVIKVRT 457


>gi|291334210|gb|ADD93877.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S08-C1340]
          Length = 92

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/88 (47%), Positives = 57/88 (64%)

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           +        AVIPGGSSVP +    +    MDY+ L ++G+ LG+  +IVMD ST ++  
Sbjct: 4   MAYWIIKTKAVIPGGSSVPVVKGEDIMDIPMDYESLMKIGTMLGSGGIIVMDESTCMVSV 63

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMMR 360
           + R+S FY  ESCGQCTPCREGTGW+ +
Sbjct: 64  LERISRFYYAESCGQCTPCREGTGWLYK 91


>gi|312143349|ref|YP_003994795.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Halanaerobium sp. 'sapolanicus']
 gi|311904000|gb|ADQ14441.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Halanaerobium sp. 'sapolanicus']
          Length = 449

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 111/335 (33%), Gaps = 63/335 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K+    +       Y ++N  E EP    D+ +MR     ++E     +  +GA 
Sbjct: 20  FPTHVKYGAEAE-------YFIINGAECEPLLMTDKFLMRSFAAEILEAIDEVAKIVGAD 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
                ++ ++  E                     +   + DI        Y  G+E  ++
Sbjct: 73  KVVFALKKKYTEELA--------------CLKRIRDENNYDIEFFLMESYYPAGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G +  P  +   P +VG       V+NV ++  V          Y     +     
Sbjct: 119 YEITG-RTVP--EGGIPLHVG-----AVVSNVGTLYNV----------YRAIRADKAVTD 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  S+   VN P  V+  +  + +E IE   G     +    AVI GG          M 
Sbjct: 161 KYVSVLAEVNKPRIVKVPIGTSINECIEAAGGSTLDEY----AVIIGGP--------MMG 208

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY---KHESCGQCTPCREGTG 356
             +++ + + +        ++I++ +   +I+   +           +C QCT C E   
Sbjct: 209 ENLVEEEAINQAVITKTAGSIIILPKKQFVIEMNQQSMEHIKNKAEAACIQCTFCTEYCP 268

Query: 357 WM---------MRVMERLVKGIAQKREIDLLYEVS 382
                       R+M  L        +I    ++ 
Sbjct: 269 RYLIGHENLEPHRIMRALAYEKEDNTDIFKTAQLC 303


>gi|34540141|ref|NP_904620.1| RnfABCDGE type electron transport complex subunit C [Porphyromonas
           gingivalis W83]
 gi|34396453|gb|AAQ65519.1| electron transport complex, RnfABCDGE type, C subunit
           [Porphyromonas gingivalis W83]
          Length = 443

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 123/370 (33%), Gaps = 63/370 (17%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
                I+ ++ A+G+ G GGA F T +K S  P   ++    L++NA E EP    D  +
Sbjct: 121 LDAKEIVAKISAAGIVGLGGATFPTHVKLSPPPGNKAEI---LIINAVECEPYLTSDHVL 177

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M      ++ G  I   AI  + A I V          L   +   Y             
Sbjct: 178 MLEHGEEIMIGVSILMKAIQVNKAVIGVENNKKDAIAHLTK-LATAYPG----------- 225

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              I V      Y  G E  L++++  K+ +    P              V NV ++  V
Sbjct: 226 ---IEVMPLKVQYPQGGEKQLIDAVIRKQVKSGALPISTG--------AVVQNVGTVFAV 274

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGG 276
              ++          +      ++ +++G  ++ P  +   +      LIE   G     
Sbjct: 275 YEAVQ----------KNKPLVERIVTVTGKKLSRPSNLLVRIGTPIAALIEAAGGLPENT 324

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 +I GG          M G  +    +       G++ V+++DR     +A+ + 
Sbjct: 325 GK----IIGGGP---------MMGRALLSPDVP---VTKGSSGVLILDRE----EAVRKP 364

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
                   C +C  C       +     +   + +  E      V   IE  + C+    
Sbjct: 365 MR-----DCIRCAKCVGVCPMGLNPAFLMRDTLYKSWETAEKGNVVDCIECGS-CSFTCP 418

Query: 397 AAWPIQGLIK 406
           A  P+   I+
Sbjct: 419 ANRPLLDYIR 428


>gi|229497138|ref|ZP_04390841.1| electron transport complex protein RnfC [Porphyromonas endodontalis
           ATCC 35406]
 gi|229315955|gb|EEN81885.1| electron transport complex protein RnfC [Porphyromonas endodontalis
           ATCC 35406]
          Length = 443

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 113/326 (34%), Gaps = 60/326 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           + +        I++++   G+ G GGA F T +K S  P   +     L++NA E EP  
Sbjct: 115 LKRECALSAKEIVDKIAEMGIVGMGGATFPTHVKLSPPPGQKA---TVLIINAVECEPYL 171

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +MR     ++ GC I   AIG     I +          ++ A     A+   G 
Sbjct: 172 TSDDALMREHAEEIMVGCTIIMKAIGVTETKIGIEVNKPEAISIMEKA-----AASFSG- 225

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I +      Y  G E  L++++  ++       P             V NV
Sbjct: 226 ---------IEIVPLKKRYPQGGEKQLIDAV-IRRQVASGALPISTGA-------VVQNV 268

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            ++  V   ++          +      ++ +++G  +  P  +   +     +LI    
Sbjct: 269 GTVYAVYEAVQ----------KNKPLLERVVTVTGKMLQKPSNLLVRIGTPMIDLINHAG 318

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           G           VI GG          M  A+++     E+    G++ +++++R     
Sbjct: 319 GMPEDTGK----VIGGGP--------MMGRALVN----TEVPVAKGSSGLLLLNRK---- 358

Query: 331 KAIWRLSVFYKHESCGQC-TPCREGT 355
           ++  R         CG+C   C  G 
Sbjct: 359 ESTRRPMRDCIR--CGKCVGVCPMGL 382


>gi|169347227|ref|ZP_02866166.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169296623|gb|EDS78754.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 436

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 59/330 (17%), Positives = 104/330 (31%), Gaps = 66/330 (20%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +N+    +     ++  VK  G+ G GGA F   +K +           Y+++NA E EP
Sbjct: 111 ENLKYSSKLSLKDVVKLVKDYGIVGLGGATFPCHVKLNV---KEDKEIKYIIINAAECEP 167

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      +I G  I          +I +    +   +  +            
Sbjct: 168 YLTCDHRVMLEYTEEIIGGLRILLELFPKALIYIGIEDNKLNAIDKFK------------ 215

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
              S LG D  I V      Y  G E  L+ +L   +   R     P ++G       V 
Sbjct: 216 ---SILGEDNKIKVMPLKSKYPQGSEKHLIYALTKLQLPSRK---LPLDIG-----CIVF 264

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +I  +   L  G               ++ +++G  +  P  +   +     ++IE 
Sbjct: 265 NVSTIYQLYASLINGLPLT----------ERIITVTGDSIRSPKNLRVKIGTQVKDIIE- 313

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG     +    +I GG  +    A       +            GT+ ++ + +   
Sbjct: 314 FCGGFINKPNK---IILGGPMMG--TAINSLDLPITK----------GTSGILCLSKVD- 357

Query: 329 IIKAIWRLSVFYKHES-CGQCTPCREGTGW 357
                          S C +C  C      
Sbjct: 358 -----------TSPNSHCIRCGKCLNSCPM 376


>gi|160884259|ref|ZP_02065262.1| hypothetical protein BACOVA_02237 [Bacteroides ovatus ATCC 8483]
 gi|237719501|ref|ZP_04549982.1| Na+transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           2_2_4]
 gi|156109998|gb|EDO11743.1| hypothetical protein BACOVA_02237 [Bacteroides ovatus ATCC 8483]
 gi|229451361|gb|EEO57152.1| Na+transporting NADH:ubiquinone oxidoreductase [Bacteroides sp.
           2_2_4]
          Length = 445

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 116/332 (34%), Gaps = 62/332 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             + K  E   + I+ ++  +G+ G GGA F T +K    P   ++    +++NA E EP
Sbjct: 113 ATLVKECELPAEEIVKKIADAGIVGLGGACFPTQVKLCPPPSFKAEC---VIINAVECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      ++ G  I   A+  + AFI +        E +   V   YA    
Sbjct: 170 YLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIELMTK-VASSYAG--- 225

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                      I V      Y  G E  L++++  K+       P             V 
Sbjct: 226 -----------IEVVPLKVKYPQGGEKQLIDAIT-KRQVASGALPISTGA-------VVQ 266

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   ++          +      ++ +++G  V  P      +     +LI  
Sbjct: 267 NVGTAFAVYEAVQ----------KNKPLFERVITVTGKSVAKPSNFLARIGTPMKQLI-D 315

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG+    ++   VI GG          M  A+++     E+ +  G++ +++M+R   
Sbjct: 316 ACGGL---PEDTGKVIGGGP--------MMGKALVNI----EVPTAKGSSGILIMNRKEA 360

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                         ++C +C  C       + 
Sbjct: 361 KRGEA---------QTCIRCAKCVSACPMGLE 383


>gi|292492763|ref|YP_003528202.1| electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus halophilus Nc4]
 gi|291581358|gb|ADE15815.1| electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus halophilus Nc4]
          Length = 515

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 120/345 (34%), Gaps = 66/345 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     + N ++ +G+ G GGAGF T +K +  P+    R   L++N  E EP    D  
Sbjct: 123 QLDPSQLRNLIRQAGIVGLGGAGFPTFIKLNPGPE---PRVETLILNGAECEPYITCDDL 179

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I   A+  H   I +         +L AA  E              
Sbjct: 180 LMRERAEEIIQGIRIMGHALHVHHCLIGIEDNKSEAYRALAAAATEG------------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I V      Y  G E  L++ L G++         P +VG+       +NV +   
Sbjct: 227 ----IEVVSIPTRYPTGGEKQLIKVLTGQEVPSNG---LPIDVGV-----VCHNVGTAVA 274

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +  G    S          ++ +++G  V  P  +E  +      L+ +       
Sbjct: 275 VHRAINVGEPLIS----------RIVTVTGSAVARPRNLEVLLGTPIRHLLTQ----CDT 320

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             D +  +I GG  +                        L   A  V+  +  ++  +  
Sbjct: 321 DIDRIDRLIMGGPMMGF---------------------TLHHDAAPVIKTTNCLLAGLQE 359

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
                    C +C  C E     ++++ + +   A+ +E+D L +
Sbjct: 360 RVRQPPVMPCIRCGACGEVCP--VQLLPQQLYWHARAKELDKLQD 402


>gi|218130961|ref|ZP_03459765.1| hypothetical protein BACEGG_02563 [Bacteroides eggerthii DSM 20697]
 gi|317476272|ref|ZP_07935522.1| electron transport complex [Bacteroides eggerthii 1_2_48FAA]
 gi|217986833|gb|EEC53165.1| hypothetical protein BACEGG_02563 [Bacteroides eggerthii DSM 20697]
 gi|316907546|gb|EFV29250.1| electron transport complex [Bacteroides eggerthii 1_2_48FAA]
          Length = 445

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 121/347 (34%), Gaps = 64/347 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++G    +S+ R   + + K      + I+ ++  +G+ G GGA F T +K    P   +
Sbjct: 100 VEGDEWEESIDRT--ETLVKECNLTAEEIVKKIADAGIVGLGGACFPTQVKLCPPPAFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M      ++ G  I   A+  + AFI +        +
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIQ 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
                         L +    GY   I V      Y  G E  L++++  ++      P 
Sbjct: 215 --------------LMTKVASGYA-GIEVVPLKVQYPQGGEKQLIDAVINRQVAAGALPI 259

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
                        V NV +   V   ++          +      ++ +++G  +++P  
Sbjct: 260 STG--------AVVQNVGTAFAVYQAVQ----------KNKPLFERVITVTGKSLSHPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +     +LI   CGG+    ++   +I GG  +    A                 +
Sbjct: 302 FLARIGTPMKQLI-DACGGL---PEDTGKIIGGGPMMG--KALINTDVP----------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             G++ +++M+      K   R  V    + C +C  C       + 
Sbjct: 346 AKGSSGILIMND-----KEAKRGEV----QPCIRCAKCVAACPMGLE 383


>gi|307249377|ref|ZP_07531370.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858599|gb|EFM90662.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 645

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      II +V   G+ G GGA F T  K S   K C      L++N  E EP    D 
Sbjct: 136 LTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVLIINGAECEPYITCDD 191

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+   H  +EG  I  + +      + +     +  ++++ A+         GSN   
Sbjct: 192 RLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALK--------GSN--- 240

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +     +      +G+      ++NV ++ 
Sbjct: 241 ----DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMGI-----VMHNVGTVF 288

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  +     V   +      L+E+      
Sbjct: 289 AVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD---- 334

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D+   V  GG     +              L+ + + +   A  ++          +
Sbjct: 335 YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTANCIIAPDH------F 374

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
             +      SC +C+ C +   
Sbjct: 375 EYAPPEPERSCIRCSSCSDACP 396


>gi|315126996|ref|YP_004068999.1| electron transport complex protein RnfC [Pseudoalteromonas sp.
           SM9913]
 gi|315015510|gb|ADT68848.1| electron transport complex protein RnfC [Pseudoalteromonas sp.
           SM9913]
          Length = 679

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 71/347 (20%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             D +++ +  +G+ G GGAGF T     ++         +L+VNA E EP    D  +M
Sbjct: 132 SHDELVDVIHNAGISGMGGAGFPT-----YVKADIKQPIEFLIVNAVECEPYITADDTLM 186

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     +++G  +    +      I +         ++  A                   
Sbjct: 187 REHAAEIVKGIELMQQLLNPTLCIIGIEDNKPEAITAMTEAAKHNE-------------- 232

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I++      Y  G E  L++ L  ++         PA++G+      V+N  ++  + 
Sbjct: 233 -HILIQTVPTVYPSGGEKQLIKLLTNREV---PNGGIPADIGI-----LVHNTGTLFAIQ 283

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +  G               ++ +++G+ ++ P  V   +      L++          
Sbjct: 284 QAVYEG----------KPLIERVVTVTGNTIHNPGNVWALLGTEIKHLLD----CQGFSP 329

Query: 278 DNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                V+ GG  +   LP                +G    T  ++  D           L
Sbjct: 330 VPQQRVVMGGPMMGFTLPT-------------VRIGVVKTTNCILAPDH--------KEL 368

Query: 337 SVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEV 381
           +     ++C +C+ C +      + + ++   K     +E D L E 
Sbjct: 369 AEPGPEKACIRCSACADACPASLLPQQLQWFAK----SKEYDKLQEH 411


>gi|307256193|ref|ZP_07537980.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865374|gb|EFM97270.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 661

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      II +V   G+ G GGA F T  K S   K C      L++N  E EP    D 
Sbjct: 136 LTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVLIINGAECEPYITCDD 191

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+   H  +EG  I  + +      + +     +  ++++ A+         GSN   
Sbjct: 192 RLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALK--------GSN--- 240

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +     +      +G+      ++NV ++ 
Sbjct: 241 ----DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMGI-----VMHNVGTVF 288

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  +     V   +      L+E+      
Sbjct: 289 AVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD---- 334

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D+   V  GG     +              L+ + + +   A  ++          +
Sbjct: 335 YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTANCIIAPDH------F 374

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
             +      SC +C+ C +   
Sbjct: 375 EYAPPEPERSCIRCSSCSDACP 396


>gi|88859825|ref|ZP_01134464.1| electron transport complex protein RnfC [Pseudoalteromonas tunicata
           D2]
 gi|88817819|gb|EAR27635.1| electron transport complex protein RnfC [Pseudoalteromonas tunicata
           D2]
          Length = 872

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 125/350 (35%), Gaps = 71/350 (20%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           LE     IIN+++++G+ G GGAGF+T     ++      +  YL+VN  E EP    D 
Sbjct: 129 LELCASEIINKIRSAGISGMGGAGFAT-----YVKAQPLQKIDYLIVNGVECEPYITSDD 183

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+    T+IEG +I +  +      I +         ++QAA                
Sbjct: 184 RLMQEHATTIIEGSLILAHVLKPERILIGIEDNKPEAIAAMQAAAKP------------- 230

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
                I++      Y  G E  L++ L G++         PA++G+      V NV ++ 
Sbjct: 231 --YPHILIRVVPTKYPSGGEKQLIQLLTGQEV---PNGKIPADIGI-----VVQNVATLF 280

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            +   +  G               ++ +I+GH +  P      +     EL+ +      
Sbjct: 281 AIEQAVVHG----------KPLIERVVTITGHTIKSPGNAWVLLGTQVRELLLQRG---- 326

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              +    VI GG  +                        L T  V V+  +  I+    
Sbjct: 327 FEPEAEQRVIMGGPMMGF---------------------TLPTVRVPVIKTTNCILAPSQ 365

Query: 335 RLSVFYKHE-SCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEV 381
               F   E +C +C+ C +      + + ++   K     +E D L + 
Sbjct: 366 VEQPFAGDEKACIRCSACADACPASLLPQQLQWFAK----SQEFDKLEQH 411


>gi|307251697|ref|ZP_07533602.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860894|gb|EFM92902.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 685

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 62/322 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      II +V   G+ G GGA F T  K S   K C      L++N  E EP    D 
Sbjct: 136 LTLTSGQIIEKVYQYGIAGLGGAVFPTASKLSLADKRC----KVLIINGAECEPYITCDD 191

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+   H  +EG  I  + +      + +     +  ++++ A+         GSN   
Sbjct: 192 RLMQDYTHEFLEGIRILRYVLRPEEVVLAIEDNKPQAIQAVEKALK--------GSN--- 240

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L++ L G +     +      +G+      ++NV ++ 
Sbjct: 241 ----DITLRVIPTIYPSGASDQLVQVLTGLEI---PQGKRSIEMGI-----VMHNVGTVF 288

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ +++G  +     V   +      L+E+      
Sbjct: 289 AVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD---- 334

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              D+   V  GG     +              L+ + + +   A  ++          +
Sbjct: 335 YQADSRFPVFLGGPMTGFI--------------LQSLQAPITKTANCIIAPDH------F 374

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
             +      SC +C+ C +   
Sbjct: 375 EYAPPEPERSCIRCSSCSDACP 396


>gi|257095915|ref|YP_003169556.1| RnfABCDGE type electron transport complex subunit C [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048439|gb|ACV37627.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 508

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 111/345 (32%), Gaps = 63/345 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           V          I     A+G+ G GGA F   +K++   ++       L+VN  E EP  
Sbjct: 121 VADPFALAPAEIARRTAAAGVVGLGGATFPAAVKFNLGRRLK---VSTLIVNGGECEPYL 177

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  IMR     +++G  I  +AIGA  A + +     +              + +  +
Sbjct: 178 SSDDRIMRDRADEVVDGLRIVMYAIGAGEALVGIEDNKPQA------------IAAMRVA 225

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            +  G   ++ V      Y  G +  L+++L GK+          A VG+      V+NV
Sbjct: 226 AAAFG---NVHVRPVPARYPMGSDKQLIQTLTGKEVPADA---RAAEVGV-----LVHNV 274

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
            + A V   LRRG          N          G +  P  V   +     +L+     
Sbjct: 275 STCAAVHRALRRGEPLVERIVTLN---------GGALTRPGNVLAPIGTPVVDLLRFAGV 325

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
             R        ++ GG  +  +                 +    G + ++  D +     
Sbjct: 326 SGRPAR-----LVLGGPMMGIVLPH------------ARVPIVKGASGILAFDAAEARTP 368

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           A            C +C  C       +  +E  +       ++D
Sbjct: 369 AA---------GPCIRCGSCTRACPMGLLPLE--MASRIGVDDLD 402


>gi|114319975|ref|YP_741658.1| electron transport complex protein RnfC [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226369|gb|ABI56168.1| electron transport complex, RnfABCDGE type, C subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 515

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 96/248 (38%), Gaps = 34/248 (13%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
             V+ +G+ G GGA F T +K +       D    L+ N  E +     D  +MR  P  
Sbjct: 130 ARVREAGIVGLGGAAFPTAIKLNPPSDTLPD---TLIANGVECDTHITCDDRLMRERPEQ 186

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164
           +++G   A+  +      I V G+      +L     +  A+  L  + +  +     V 
Sbjct: 187 ILDGVATAADMLNVVRIRIAVEGDKPEAARAL----RDALAASGLADDGRRDWA----VV 238

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
                Y  G E  L+ +L G++         P +VG+       +NV + A +   +R G
Sbjct: 239 DVPKRYPAGSERQLIHNLTGRRV---PSDGLPKDVGV-----ITSNVGTFAAIHRAIRHG 290

Query: 225 ASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
                          ++ +I+G  V  P  VE  +     ELI  HCGG     D +  +
Sbjct: 291 EPLIR----------RIVTITGDGVRRPANVEARIGTPMAELI-DHCGG---YHDGVYQL 336

Query: 284 IPGGSSVP 291
           + GGS + 
Sbjct: 337 VMGGSLMG 344


>gi|111075057|gb|ABH04901.1| ethanolamine utilization Fe-S center protein eut [Heliobacillus
           mobilis]
          Length = 444

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 128/347 (36%), Gaps = 67/347 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            R+ I+  VK +G+ G GGAGF T +K +            ++ N  E EP     + +M
Sbjct: 1   MREKIVKAVKEAGVVGAGGAGFPTHIKMNASAD-------IIIANGAECEPLLRSHQHLM 53

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             E   ++ G +    A GA  ++I ++ ++    E+L+ +++  +A G           
Sbjct: 54  AAESDRVVLGLIAVMLATGAQKSYIGLKKKYSVAIEALEQSIER-HAKG----------- 101

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             + +      Y  G+E  L+  + GK      +   P +VG+      V NVE++  + 
Sbjct: 102 -RVELFILPDFYPAGDEQVLVYEVTGKII---PEGGIPLHVGV-----VVINVETLVNIT 152

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
             L                 TK  +++G V  P T++  + I    LIE   G I   + 
Sbjct: 153 KALD-----------GVPVMTKYVTVTGAVRQPVTLKVPIGIPIRLLIEAAGGAIVNDY- 200

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AIWR 335
              A+I GG  +  +       + +             T  +IV+ +   +I      W 
Sbjct: 201 ---ALIDGGPMMGRIVE---VDSPVTKT----------TGGIIVLPKDHSLIAGKTLPWS 244

Query: 336 LSVFYKHESCGQCTPCREGTGWM--------MRVMERLVKGIAQKRE 374
                    C  C  C +              R+M+ +  G + + +
Sbjct: 245 AIANRSKSVCCACRACTDCCPRHLLGHSLEPHRIMQAIGNGTSYQGD 291


>gi|329955028|ref|ZP_08296009.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           clarus YIT 12056]
 gi|328526318|gb|EGF53333.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           clarus YIT 12056]
          Length = 445

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 120/347 (34%), Gaps = 64/347 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++G    +S+ R     + K      + I+ ++  +G+ G GGA F T +K    P   +
Sbjct: 100 VEGDEWEESIDRTD--TLVKECNLTAEEIVKKIADAGIVGLGGACFPTQVKLCPPPAFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M      ++ G  I   A+  + AFI +        +
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIQ 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +        A+G  G          I V      Y  G E  L++++  ++      P 
Sbjct: 215 LMTK-----VAAGYAG----------IEVVPLKVQYPQGGEKQLIDAVISRQVAAGALPI 259

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
                        V NV +   V   ++          +      ++ +++G  ++ P  
Sbjct: 260 STG--------AVVQNVGTAFAVYQAVQ----------KNKPLFERVITVTGKSLSKPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +     +LI   CGG+    ++   VI GG  +    A                 +
Sbjct: 302 FLARIGTPMKQLI-DACGGL---PEDTGKVIGGGPMMG--KALVNTDVP----------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             G++ +++M+      K   R  V    + C +C  C       + 
Sbjct: 346 AKGSSGILIMND-----KEAKRGEV----QPCIRCAKCVGACPMGLE 383


>gi|331091676|ref|ZP_08340510.1| hypothetical protein HMPREF9477_01153 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403433|gb|EGG82992.1| hypothetical protein HMPREF9477_01153 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 438

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 106/298 (35%), Gaps = 42/298 (14%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPH 103
           ++ VKA+G+ G GGAGF TG+K     +       Y+++NA E EPG   +   +  E  
Sbjct: 79  LDMVKAAGIVGMGGAGFPTGVKIGTDLQ-----GGYILINAAECEPGLRHNIQQIEEECD 133

Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV 163
            +I G         A  A   ++ +  +  ++L+ A+ +  A               I +
Sbjct: 134 KVIRGVKYTMEISNAAKAIFAIKKKNEKAVQTLKEALKDEEA---------------ISI 178

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
           H     Y  GEE A++    G + +P   P            + V NVE++A +   +  
Sbjct: 179 HLLPDIYPMGEERAVVRECLGIELKPEELPS--------VAKSIVINVETLARITEAIEE 230

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTV-EESMSITFDELIEKHCGGIRGGWDNLLA 282
               +       ++   +       N P    +  +  +  ELIE+  G      + ++ 
Sbjct: 231 RKPCF-------SKNLTVIGKLNGGNEPHVFKDVPVGTSVAELIERAGGIDGEYGEIIMG 283

Query: 283 VIPGGSS----VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
               G +     P           M++  L   G+ +G            +     ++
Sbjct: 284 GPFTGKATTLDAPITKTTGGIIVTMEFPDL--HGATMGVLVCACGGDEIRMRDIAEKM 339


>gi|332883529|gb|EGK03812.1| hypothetical protein HMPREF9456_01879 [Dysgonomonas mossii DSM
           22836]
          Length = 430

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 112/363 (30%), Gaps = 60/363 (16%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + +I  +K +G+ G+GGA F T +K+S    V   + H  +VN  E EP    D  +M
Sbjct: 113 SPEELIERIKDTGIVGQGGAQFPTAIKYS----VGEHKIHTFIVNGAECEPYLTSDYSLM 168

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
                 L +G  I    + A    I +  +     ++          +  L      GY 
Sbjct: 169 AERTEELFKGIDIIKKILNADNVIIGIEHQNRELLKAF---------APYLQQKEHKGYK 219

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             +        Y  G E  L++S  G +  PR K   PA  G+      V+N+ +I  V 
Sbjct: 220 AIL----LPDQYPQGGELQLIKSATGIE-LPRSK--RPAEAGI-----IVSNIGTIYSVY 267

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
             +       S             S+    NY    E  +      + +       G   
Sbjct: 268 QAVVNHKPVISRIIT--------ISVERSTNY-GNYEVKIGTPIRHITKSLGIETSGN-- 316

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDG---LKEMGSGLGTAAVIVMDRSTDIIKAI-- 333
               ++ GG  +                G   LK+                   ++ +  
Sbjct: 317 ---TIVQGGPMMGKAIQDLSIPVTKGASGILFLKKEEVKRSNCISCGYCVDVCPMRLMPM 373

Query: 334 ----------WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
                     +     Y   SC +C  C       + ++E + +G         L E++ 
Sbjct: 374 KFEENYRKKKYFNLEKYNISSCIECAACEYICPSNVPLIESIKEGKV------KLKELAN 427

Query: 384 NIE 386
            I 
Sbjct: 428 AIR 430


>gi|148244308|ref|YP_001219002.1| electron transport complex protein RnfC [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326135|dbj|BAF61278.1| electron transport complex protein RnfC [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 496

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 109/324 (33%), Gaps = 73/324 (22%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L   ++ ++  ++ SG+ G GGAGF T +K + +        H L++N  E EPG   D 
Sbjct: 118 LHYSKETLVGIIQKSGIVGMGGAGFPTHVKINKVLDC-----HTLIINGTECEPGVMCDD 172

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M+  P  +I G  I  +  GA  A I +  +     +             LL  N   
Sbjct: 173 ALMQFYPKEIILGIEILLYICGADRAIIAIEDDKQAAYQ------------ALLTVN--- 217

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
             +  I ++     Y  G E  L+++L   +    L   F  N G+              
Sbjct: 218 -RNDRININQIPTKYTSGAEKLLIKALLDIEI---LSGGFAINEGI-------------- 259

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +   +    + +          +++ +++G   YP   E  +  +F+ LI         
Sbjct: 260 -ICQNISTTKAVFDAVINHKPLVSRIVTVTGDGVYPNNFEVRLGASFEHLI--------- 309

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV---IVMDRSTDIIKA 332
                                 M          +  G  +G   V   + + ++T  I  
Sbjct: 310 ---------------------SMTSPNTKEHNYRMGGMMMGIDVVDINMPIGKTTSAIFV 348

Query: 333 IWRLSVFYKHESCGQCTPCREGTG 356
             ++S     E C +C  C E   
Sbjct: 349 NNKVSEPIVQE-CIRCGQCSEVCP 371


>gi|330502370|ref|YP_004379239.1| electron transport complex protein RnfC [Pseudomonas mendocina
           NK-01]
 gi|328916656|gb|AEB57487.1| electron transport complex protein RnfC [Pseudomonas mendocina
           NK-01]
          Length = 814

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 109/364 (29%), Gaps = 71/364 (19%)

Query: 15  LQGKSLSDSMSR---GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
           +    L + +       + +++         ++  ++ +G+ G GGAGF T +K +  P 
Sbjct: 105 IDSDGLDEWIELTPPADYRSLE------PAELLTLIREAGINGLGGAGFPTAVKLTARPT 158

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
                 H L++N  E EP    D  +MR     L+ G  + +  I      I +      
Sbjct: 159 QK---IHTLIINGTECEPYITADDVLMRERAAELVAGIEVLAHLIQPQQVLIGIEDNKPE 215

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              ++ AA               +G D  + V      Y  G E  L++ L G +     
Sbjct: 216 AIAAVSAAC--------------IGRDYQVRVF--PTKYPSGGEKQLIQILTGVEV---P 256

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYP 251
               PA++G+        NV +   +   +  G           +R T L      +  P
Sbjct: 257 SGGLPADIGI-----LCQNVGTCVAIHDAVLLGKPLI-------SRITTLTG--EALVRP 302

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
             VE  +     EL+             +  +I GG  +            +        
Sbjct: 303 GNVEALIGTPVGELLAFAG----LDPSKINRLIMGGPMMGFTLPS--LDVPLIKTS---- 352

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGI 369
                         +  +      L        C +C  C E      + + +     G 
Sbjct: 353 --------------NCLLASTAAELPPPPPAMPCIRCGECAEACPASLLPQQLHFFALGQ 398

Query: 370 AQKR 373
             ++
Sbjct: 399 EHEQ 402


>gi|170761255|ref|YP_001788921.1| respiratory-chain NADH dehydrogenase family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408244|gb|ACA56655.1| respiratory-chain NADH dehydrogenase family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 428

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 95/253 (37%), Gaps = 47/253 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++ ++A+G+ G GGAGF T +K              ++ NA E EP    + + + +EP
Sbjct: 80  ILDLIQAAGIVGMGGAGFPTHIK-----MDVDLNGGVVIANAVECEPLLAHNINQIINEP 134

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             + +G   A  A+ A      ++ + +    SL+  +                 D +I 
Sbjct: 135 ELIYKGLCYAMKAVNASKGIFAIKSKNVEAISSLKNVIK----------------DTNIE 178

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +      Y  GEE A++  + GK   P  + P  AN         V+NVE++A +   + 
Sbjct: 179 IVKLPDMYPMGEERAIIREVLGKLLDP-SQLPLEANA-------VVSNVETLAKIAEAVE 230

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNY----PCTVEESMSITFDELIEKHCGGIRGGWD 278
                      +    +K  ++ G +         +   +  T  ELIE   G      +
Sbjct: 231 ----------LKKPVISKNITVVGKLKNGLESQVFINVPIGTTVRELIEAAGGIDGEYGE 280

Query: 279 NLLAVIPGGSSVP 291
               +I GG    
Sbjct: 281 ----IIIGGPFTG 289


>gi|119896806|ref|YP_932019.1| electron transport complex protein RnfC [Azoarcus sp. BH72]
 gi|119669219|emb|CAL93132.1| probable electronen transport complex protein RnfC [Azoarcus sp.
           BH72]
          Length = 519

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 104/328 (31%), Gaps = 55/328 (16%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
                  I   V  +G+ G GGA F   +K S   K        L++N  E EP    D 
Sbjct: 129 FALSAAEISRRVAEAGIVGMGGATFPAAVKLSLGQKTA---IPTLILNGGECEPYLTCDD 185

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MR     +I+G  I   A+G     I V               +      +    +  
Sbjct: 186 RLMRDRADQVIDGARIILHAMGGREVLIGV---------------ENNKPVAIAALEAAA 230

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G   ++ V      Y  G E  L+E L G++         PA++G+      V NV + A
Sbjct: 231 GAFPEVKVVAVPSRYPMGSEKQLIEWLTGREI---PAGGRPADIGV-----MVQNVGTAA 282

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +   +R G          +  G         V  P  VE  +      L+   CGG++ 
Sbjct: 283 AIHRAIRFGEPLTRRIVTVSGGG---------VRTPRNVEVRIGTPLSALL-AFCGGLKA 332

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                +  + GG  +            +    L E+    G+  ++ +       +    
Sbjct: 333 E---AVRYVMGGPMMG-----------LAVQSL-EIPVIKGSGGLLALVAG----EVGSY 373

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVME 363
            +       C +C  C       +  ++
Sbjct: 374 GTEDTSAGPCIRCASCVGACPIGLMPLD 401


>gi|315925725|ref|ZP_07921933.1| propanediol utilization protein PduS [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620968|gb|EFV00941.1| propanediol utilization protein PduS [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 439

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 107/317 (33%), Gaps = 58/317 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++++VK++G+ G GGA F T +K              ++VN  E EP    D+ +M    
Sbjct: 3   LVDKVKSAGIVGAGGATFPTHVKIDATAD-------VVIVNGAECEPLLRVDQQLMDLRA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++E          A    I ++ +++    +L               N+ L     I 
Sbjct: 56  SDMLEALQTVMDHTQAKEGIIGLKKKYVPAINNL---------------NNLLKDYPKIK 100

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +      Y  G+E  L+    G +  P    P             V NVE++  +   L 
Sbjct: 101 LCILNNFYPAGDEQTLVYETTG-RIVPEGGIPLAVGA-------LVMNVETLLNIHDYLT 152

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                      E     K  +++G V    T +  + IT  E +    G I   +     
Sbjct: 153 E----------EKPVIDKYLTVTGKVKRRITTKVPLGITVKEALTLAGGPIISDY----V 198

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL--SVFY 340
           V+ GG          M G I+  D     G+      +++    + I+        S+  
Sbjct: 199 VVNGGP---------MMGKIVSEDSYITKGT---KGLIVLPKDHSLIVSKTRSFKDSLKL 246

Query: 341 KHESCGQCTPCREGTGW 357
              +C QC+ C E    
Sbjct: 247 AATACMQCSLCSEVCPR 263


>gi|163802832|ref|ZP_02196721.1| electron transport complex protein RnfC [Vibrio sp. AND4]
 gi|159173372|gb|EDP58195.1| electron transport complex protein RnfC [Vibrio sp. AND4]
          Length = 911

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 109/322 (33%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 130 QETADTLIDVIRLAGVSGMGGAGFPTAKK----IQSGLARTEILIVNAAECEPYITADDK 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL-QAAVDECYASGLLGSNSKL 155
           +M+     LI+G  I    +      I +        ++L QAA+ +             
Sbjct: 186 LMQEHADELIQGIEIVEHILKPKLTIIGIEDNKPAAIKALEQAAIKK------------- 232

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI++      Y  G E  L++ L  K+         PA++G+      V NV S+ 
Sbjct: 233 ----DIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGSIPADIGI-----LVQNVGSLY 280

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            +   +  G    +          ++ +++G     P  V   +      L+++      
Sbjct: 281 SIKRAVIDGEPMVN----------RIVTLTGKTFKQPRNVWTLLGTPVQALLDEFGY--- 327

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                L  +I GG  +                 L      +   A  ++           
Sbjct: 328 KADKKLQRLIMGGPMMGF--------------TLPHTQVPITKTANCILAPKR------R 367

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
            ++       C +C+ C E   
Sbjct: 368 EIASDQYEMECIRCSQCAEACP 389


>gi|189466148|ref|ZP_03014933.1| hypothetical protein BACINT_02518 [Bacteroides intestinalis DSM
           17393]
 gi|189434412|gb|EDV03397.1| hypothetical protein BACINT_02518 [Bacteroides intestinalis DSM
           17393]
          Length = 445

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 121/347 (34%), Gaps = 64/347 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++G    +S+ R   + + K      + I+ ++  +G+ G GGA F T +K    P   +
Sbjct: 100 VEGDEWEESIDRT--ETLVKECNLTSEEIVKKIADAGIVGLGGACFPTQVKLCPPPAFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M      ++ G  I   A+  + AFI +        +
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIQ 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +   V   YA               I V      Y  G E  L++++  ++        
Sbjct: 215 LMTK-VASSYAG--------------IEVVALKVQYPQGGEKQLIDAITSRQV---ASGA 256

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            P + G       V NV +   V   ++          +      ++ +++G  V  P  
Sbjct: 257 LPISTG-----AVVQNVGTAFAVYQAVQ----------KNKPLFERVITVTGKSVAKPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +     +LI   CGG+    ++   +I GG  +    A                 +
Sbjct: 302 FLARIGTPMKQLI-DACGGL---PEDTGKIIGGGPMMG--KALINTDVP----------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             G++ +++M+      K   R  +    + C +C  C       + 
Sbjct: 346 AKGSSGILIMNN-----KEAKRGEI----QPCIRCAKCVGACPMGLE 383


>gi|119473030|ref|ZP_01614852.1| electron transport complex protein RnfC [Alteromonadales bacterium
           TW-7]
 gi|119444608|gb|EAW25920.1| electron transport complex protein RnfC [Alteromonadales bacterium
           TW-7]
          Length = 780

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 115/349 (32%), Gaps = 71/349 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
                 +++ +  +G+ G GGAGF T +K          +  + +VNA E EP    D  
Sbjct: 130 TLSHTELVDIIHQAGISGMGGAGFPTYIK-----ADTKQKIDFFIVNAVECEPYITADDT 184

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  +    +      + +         ++  A +               
Sbjct: 185 LMREHAAEIIQGIELMQQLLDPTICIVGIEDNKPEAIAAMTKAAEHNNK----------- 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               IIV      Y  G E  L++ L  ++         PA++G+      ++N  ++  
Sbjct: 234 ----IIVQTVPTVYPSGGEKQLIKLLTNREV---PSMGIPADIGV-----LMHNTGTLYA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +  G               ++ +++G+ ++ P  V   +      L++        
Sbjct: 282 VQQAVYEG----------KPLIERVVTVTGNTIHKPGNVWALLGTEIKHLLD----CQGF 327

Query: 276 GWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                  V+ GG  +   LP                +G    T  ++  D          
Sbjct: 328 SPVPQQRVVMGGPMMGFTLPT-------------VRIGVIKTTNCILAPDH--------K 366

Query: 335 RLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEV 381
            L+     ++C +C+ C +      + + ++   K     +E D L E 
Sbjct: 367 ELAEPGPEKACIRCSACADACPASLLPQQLQWFAK----SKEYDKLQEH 411


>gi|188995522|ref|YP_001929774.1| electron transport complex RnfABCDGE type C subunit [Porphyromonas
           gingivalis ATCC 33277]
 gi|188595202|dbj|BAG34177.1| electron transport complex RnfABCDGE type C subunit [Porphyromonas
           gingivalis ATCC 33277]
          Length = 443

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 123/370 (33%), Gaps = 63/370 (17%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
                I+ ++ A+G+ G GGA F T +K S  P   ++    L++NA E EP    D  +
Sbjct: 121 LDAKEIVAKISAAGIVGLGGATFPTHVKLSPPPGNKAEI---LIINAVECEPYLTSDHVL 177

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M      ++ G  I   AI  + A I V          L   +   Y             
Sbjct: 178 MLEHGEEIMIGVSILMKAIQVNKAVIGVENNKKDAIVHLTK-LATAYPG----------- 225

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              I V      Y  G E  L++++  K+ +    P              V NV ++  V
Sbjct: 226 ---IEVMPLKVQYPQGGEKQLIDAVIRKQVKSGALPISTG--------AVVQNVGTVFAV 274

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGG 276
              ++          +      ++ +++G  ++ P  +   +      LIE   G     
Sbjct: 275 YEAVQ----------KNKPLVERIVTVTGKKLSRPSNLLVRIGTPIAALIEAAGGLPENT 324

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 +I GG          M G  +    +       G++ V+++DR     +A+ + 
Sbjct: 325 GK----IIGGGP---------MMGRALLSPDVP---VTKGSSGVLILDRE----EAVRKP 364

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
                   C +C  C       +     +   + +  E      V   IE  + C+    
Sbjct: 365 MR-----DCIRCAKCVGVCPMGLNPAFLMRDTLYKSWETAEKGNVVDCIECGS-CSFTCP 418

Query: 397 AAWPIQGLIK 406
           A  P+   I+
Sbjct: 419 ANRPLLDYIR 428


>gi|167856054|ref|ZP_02478797.1| electron transport complex protein RnfC [Haemophilus parasuis
           29755]
 gi|167852803|gb|EDS24074.1| electron transport complex protein RnfC [Haemophilus parasuis
           29755]
          Length = 629

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 126/395 (31%), Gaps = 77/395 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +D  L    D II +V  +G+ G GGA F T  K     K C      L++N  E EP
Sbjct: 124 QPIDDFLSLTSDQIIQKVYQAGIAGLGGAVFPTSHKLHVADKRC----KLLIINGAECEP 179

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     +IEG  I  + +      I +     +  ++++ A+         
Sbjct: 180 YITCDDRLMQDYADEMIEGVRILRYVLRPEEVLIAIEDNKPKAIQAVEKALKGAN----- 234

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     DI V      Y  G    L++ L G +     +      +G+      ++
Sbjct: 235 ----------DISVRVIPTKYPSGASDQLVQVLTGLEI---PQGKRTIEMGI-----VMH 276

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   +                  ++ +++G  +     V   +      L+E+
Sbjct: 277 NVGTAFAVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWAKLGTPILHLLEQ 326

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                    D    V  GG  +  +              L  + S +   A  ++     
Sbjct: 327 VD----YQADERFPVFLGGPMMGFI--------------LPSLQSPITKTANCIIAPDH- 367

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
                +  +      +C +C+ C +      + + +    +     +  +  Y +   IE
Sbjct: 368 -----FEYAPPEPERNCIRCSSCSDACPVDLLPQQLYWFARAEDHDKSKE--YHLDACIE 420

Query: 387 GRTICALGDAAAWPIQG---LIKNFRPLIEERIDQ 418
               C      A+       LI+ FR   + +I +
Sbjct: 421 ----CG---VCAYVCPSYIPLIQYFRQE-KAKIQE 447


>gi|33151623|ref|NP_872976.1| electron transport complex protein RnfC [Haemophilus ducreyi
           35000HP]
 gi|71153698|sp|Q7VNT4|RNFC_HAEDU RecName: Full=Electron transport complex protein rnfC
 gi|33147844|gb|AAP95365.1| putative iron-sulfur binding NADH dehydrogenase [Haemophilus
           ducreyi 35000HP]
          Length = 702

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/404 (15%), Positives = 129/404 (31%), Gaps = 80/404 (19%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            + + R     ++  L    D II +V   G+ G GGA F T  K S   K C      L
Sbjct: 124 DEWIER---HPIEDFLTLTSDQIIQKVYQYGIAGLGGAVFPTACKLSLADKRC----KVL 176

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           ++N  E EP    D  +M+     L+EG  I  + +      I +         +++ A+
Sbjct: 177 IINGAECEPYITCDDRLMQDFTAELLEGIRILRYVLRPEEVVIAIEDNKPHAIAAIEQAL 236

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                              D+ V      Y  G    L++ L G +     +      +G
Sbjct: 237 KGAN---------------DMFVRAIPTKYPSGASDQLVQILTGLEI---PQGKRTIEMG 278

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMS 259
           +      ++NV +   +   +                  ++ +++G  +     V   + 
Sbjct: 279 I-----VMHNVGTAFAIKRAIIDDEPLI----------ERVVTLTGDKIRNKGNVWARLG 323

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
                L+E+         D    V  GG     +              L  + S +   A
Sbjct: 324 TPIIHLLEQVD----YQADRRFPVFLGGPMTGFI--------------LPSLQSPVTKTA 365

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDL 377
             ++          +  +      +C +C+ C +      + + +    +    ++ ++ 
Sbjct: 366 NCIIAPDH------FEYAPPEPERNCIRCSNCSDACPVSLLPQQLYWFARAEDHQKSME- 418

Query: 378 LYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPLIEERIDQ 418
            Y +   IE    C      A+       LI+ FR   + +I++
Sbjct: 419 -YHLDACIE----CG---VCAYVCPSYIPLIQYFRQE-KAKINE 453


>gi|319896878|ref|YP_004135073.1| NADH:ubiquinone oxidoreductase, subunit rnfc [Haemophilus
           influenzae F3031]
 gi|317432382|emb|CBY80737.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus
           influenzae F3031]
          Length = 650

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 124/401 (30%), Gaps = 73/401 (18%)

Query: 14  GLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVC 73
            LQ   L   + R   +++D       + +I+++  +G+ G GGA F T  K     +  
Sbjct: 110 HLQADGLDQWIER---NSIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAK----IQSA 162

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
             +   L++N  E EP    D  +MR     +I+G  I  + +      I +        
Sbjct: 163 EQKVKLLIINGAECEPYITCDDCLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAI 222

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            +++ A+                   DI +      Y  G    L+  L G +       
Sbjct: 223 SAIRNALQGAN---------------DISIRVIPTKYPSGATKQLIYLLTGIEV---PSG 264

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPC 252
              +++G+      + NV ++  +   +                  ++ +++G  +    
Sbjct: 265 ARSSSIGV-----LMQNVGTMFAIKRAVINDEPLI----------ERVVTLTGNKIAEKG 309

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
                +     +++          +         G  +P L A   +             
Sbjct: 310 NYWVRLGTPISQILSDAGYQFDKHFPIFAGGSMMGLELPNLNAPVTKLV----------- 358

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIA 370
                        +  +       +     ++C +C+ C +      M + +    +   
Sbjct: 359 -------------NCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSED 405

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411
            K+  +  Y +   IE   ICA    +  P   LI+ FR  
Sbjct: 406 HKKSEE--YALKDCIECG-ICAYVCPSHIP---LIQYFRQE 440


>gi|327483731|gb|AEA78138.1| Electron transport complex protein RnfC [Vibrio cholerae LMA3894-4]
          Length = 770

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 104/331 (31%), Gaps = 70/331 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E 
Sbjct: 127 DYQQL------SPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAEC 176

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR   H +I+G  I    +      I +                      
Sbjct: 177 EPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA------------- 223

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
              +  +   D  I++      Y  G E  L++ L   +     K   PA++GL      
Sbjct: 224 ---ALQQAAQDKPIVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----M 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV S+  +   +  G               ++ +++G     P  V   +      L+
Sbjct: 273 VQNVGSLQAIARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +           L  +I GG  +                        L  A V +   +
Sbjct: 323 NEFGY---KADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTA 358

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
             I+          ++E +C +C  C E   
Sbjct: 359 NCILAPTRNELTSSENEMACIRCGQCAEACP 389


>gi|229515401|ref|ZP_04404860.1| electron transport complex protein RnfC [Vibrio cholerae TMA 21]
 gi|229347170|gb|EEO12130.1| electron transport complex protein RnfC [Vibrio cholerae TMA 21]
          Length = 800

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 104/331 (31%), Gaps = 70/331 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E 
Sbjct: 154 DYQQL------SPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAEC 203

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR   H +I+G  I    +      I +                      
Sbjct: 204 EPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA------------- 250

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
              +  +   D  I++      Y  G E  L++ L   +     K   PA++GL      
Sbjct: 251 ---ALQQAAQDKPIVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----M 299

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV S+  +   +  G               ++ +++G     P  V   +      L+
Sbjct: 300 VQNVGSLQAIARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALL 349

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +           L  +I GG  +                        L  A V +   +
Sbjct: 350 NEFGY---KADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTA 385

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
             I+          ++E +C +C  C E   
Sbjct: 386 NCILAPTRNELTSSENEMACIRCGQCAEACP 416


>gi|253997322|ref|YP_003049386.1| RnfABCDGE type electron transport complex subunit C [Methylotenera
           mobilis JLW8]
 gi|253984001|gb|ACT48859.1| electron transport complex, RnfABCDGE type, C subunit
           [Methylotenera mobilis JLW8]
          Length = 637

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 88/255 (34%), Gaps = 36/255 (14%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
            + +I  ++ SG+ G GGA F T +K   + K  +   H L++NA E EP    D  +MR
Sbjct: 142 HNELITSLRTSGIVGLGGATFPTHIK---LRKDGASAIHTLIINAAECEPYITCDDMLMR 198

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                +I+G  IA   + A    I +         ++ AA                    
Sbjct: 199 ERADEIIQGIAIAQHLLRATAVVIGIEDNKPAAAHAMTAASQTLA--------------- 243

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           ++ V      Y  G+   L+  L G +            VG+      V NV ++  +  
Sbjct: 244 NVTVTTVPTLYPSGDARRLIHLLLGVEV---PHHKRSTEVGI-----QVFNVATVLALYR 295

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
               G    S          ++ +++G+V  P   E  +      LI    G        
Sbjct: 296 YFTFGEPSVS----------RIVTVTGNVASPQNFEVLLGTPMPLLIAAAGGAKADTTHY 345

Query: 280 LLAVIPGGSSVPCLP 294
           ++     G  +P L 
Sbjct: 346 VMGGPMMGFDLPSLN 360


>gi|254291762|ref|ZP_04962548.1| RnfC-related protein [Vibrio cholerae AM-19226]
 gi|150422355|gb|EDN14316.1| RnfC-related protein [Vibrio cholerae AM-19226]
          Length = 854

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 130 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +                         +  +  
Sbjct: 186 LMRQYAHEIIQGIEIVEHILKPKLTVIGIEDNKPEAVA----------------ALQQAA 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 230 QDKPIVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 282 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 367

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 368 ELTSSDNEMACIRCGQCAEACP 389


>gi|315634428|ref|ZP_07889715.1| electron transport complex protein RnfC [Aggregatibacter segnis
           ATCC 33393]
 gi|315477018|gb|EFU67763.1| electron transport complex protein RnfC [Aggregatibacter segnis
           ATCC 33393]
          Length = 701

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 59/410 (14%), Positives = 128/410 (31%), Gaps = 79/410 (19%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           +      +Q   L     +     ++    + R+ +I ++  +G+ G GGA F T  K  
Sbjct: 104 LTETCVHIQADGLDQWRPQ---MPIEDFFTQTREQLIEKIYQAGIAGLGGAVFPTAAK-- 158

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                   +   L++N  E EP    D  +MR     +IEG  I  + +      I +  
Sbjct: 159 --IHSAEKQVKLLIINGAECEPYITCDDRLMRDYAGEIIEGVRILRYILRPEKVVIAIED 216

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
             +    +L+ A+                   DI +      Y  G    L++ L G + 
Sbjct: 217 NKLEAVSALERALHGAN---------------DIEIRVIPTKYPSGAAKQLIQVLTGMEV 261

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
                     ++G+      + NV +   +   +                  ++ +++G 
Sbjct: 262 ---PSGQRSYSIGV-----LMQNVGTAFAIKRAVLDDEPLI----------ERVVTLTGD 303

Query: 248 -VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            +                L+ +        +D+   V  GG  +  +             
Sbjct: 304 KIPNKGNYWARFGTPISHLLRETG----YQYDDRFPVFMGGPMMGVI------------- 346

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMER 364
            L ++ + +   A  ++          +  +   + +SC +C+ C +      M + +  
Sbjct: 347 -LPDLNAPMTKVANCLLAPDH------FEYAPPEQEKSCIRCSACSDACPVKLMPQQLYW 399

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             +    ++  +  Y +   IE    C      A+       LI+ FR  
Sbjct: 400 FARSENHEKSEE--YSLKDCIE----CG---VCAYVCPSHIPLIQYFRQE 440


>gi|220935791|ref|YP_002514690.1| electron transport complex, RnfABCDGE type, C subunit
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997101|gb|ACL73703.1| electron transport complex, RnfABCDGE type, C subunit
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 532

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 37/261 (14%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           ++  L      + N ++ +G+ G GGA F   +K +  P    D    LV+N  E EP  
Sbjct: 122 IEDYLNADPVSLRNRIREAGIVGLGGAAFPAAVKITPRPGQTLDC---LVINGAECEPYI 178

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +MR     +IEG  I   A+   C  I +         +++ A+    A G    
Sbjct: 179 TCDDSLMRTHARGVIEGIRILMQALKPSCCLIGIEDHMSGAIAAMRNALGGDEAHG---- 234

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                    I +      Y  G E  L++ L G++   +     PA++G+        NV
Sbjct: 235 ---------IRIVPIPSLYPAGGERQLIQVLTGREVPSQG---LPADIGM-----VCQNV 277

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
            +   +   +  G    S       +G         V +P  +E  +     +L+    G
Sbjct: 278 GTAYAIYRAVAHGEPLISRIITVTGKG---------VQHPRNLEVLIGTPIADLVAAAEG 328

Query: 272 GIRGGWDNLLAVIPGGSSVPC 292
                   +  +I GG  +  
Sbjct: 329 ----YTGEVSRLIMGGPMMGF 345


>gi|148827108|ref|YP_001291861.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittGG]
 gi|148718350|gb|ABQ99477.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittGG]
          Length = 683

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 106 TLSSEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 161

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 162 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 209

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI V      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 210 ---DISVRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 258

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 259 IKRAVINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 304

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 305 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 344

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 345 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 401

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 402 VCPSHIP---LIQYFRQE 416


>gi|323485356|ref|ZP_08090705.1| hypothetical protein HMPREF9474_02456 [Clostridium symbiosum
           WAL-14163]
 gi|323401392|gb|EGA93741.1| hypothetical protein HMPREF9474_02456 [Clostridium symbiosum
           WAL-14163]
          Length = 452

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 113/343 (32%), Gaps = 69/343 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K++            +++N  E EP    DR ++R++   LI+   +     GA 
Sbjct: 20  FPTHAKYN-------GTIETIIINGAECEPLLQTDRYLIRNKARELIQAADMLLRETGAG 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++  + RE ++L+ A+                +   + +H     +  G+E  ++
Sbjct: 73  RCVIALKHSYTREIKALEEAI--------------HSFSSFVSLHRLESFFPAGDEQTIV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G    P      P NVG       V+N  ++  +   +                  
Sbjct: 119 YEVTGNVVPP---GGIPLNVG-----CVVSNAATLFCIYEAME-----------GRPFTQ 159

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P   +  +     E ++   G     +     V+ GG          M 
Sbjct: 160 KYLTVTGAVGKPVIAKVPIGTPVSECLKLAGGPFIPDY----VVVNGGP---------MM 206

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AIWRLSVFYKHESCGQCTPCREGTG 356
           G ++  +  +        + +IV+   + I +      R  +     +C QC+ C +   
Sbjct: 207 GKLLTKEEAENAWVTKTMSGLIVLPADSSIARRSEVTVRHMLNRAKSACIQCSFCSQLCP 266

Query: 357 WM--------MRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
                      R+M +L         +D       +I    +C
Sbjct: 267 RALLGHPLKPHRIMRKLASCHDITEILDD-----SDIRNAALC 304


>gi|168215248|ref|ZP_02640873.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens CPE str. F4969]
 gi|170713346|gb|EDT25528.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens CPE str. F4969]
          Length = 436

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 113/350 (32%), Gaps = 69/350 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +N+    +     ++  VK  G+ G GGA F   +K +           Y+++NA E EP
Sbjct: 111 ENLKYSSKLSLKDVVKLVKDYGIVGLGGATFPCHVKLNV---KEDKEIKYIIINAAECEP 167

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      +I G  I          +I +    +   +  +            
Sbjct: 168 YLTCDHRVMLEYTEEIISGLRILLELFPKALIYIGIEDNKLNAIDKFK------------ 215

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
              S LG D  I V      Y  G E  L+ +L   +         P ++G       V 
Sbjct: 216 ---SILGEDNKIKVMPLKSKYPQGSEKHLIYALTKLQV---PSGKLPLDIG-----CIVF 264

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +I  +   L  G               ++ +++G  + +P  ++  +     ++IE 
Sbjct: 265 NVSTIYQLYASLINGLPLT----------ERIITVTGDSIRFPKNLKVKIGTPVKDIIE- 313

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG          +I GG  +    +       +            GT+ ++ + +   
Sbjct: 314 FCGGFINKPSK---IILGGPMMG--TSINSLDLPITK----------GTSGILCLSKVD- 357

Query: 329 IIKAIWRLSVFYKHES-CGQCTPCREGTGWMM---RVMERLVKGIAQKRE 374
                          S C +C  C       +   ++ E  +KG   + E
Sbjct: 358 -----------TSPNSHCIRCGKCLNSCPMNLIPQKLNELALKGKLDEFE 396


>gi|228470498|ref|ZP_04055365.1| electron transport complex protein RnfC [Porphyromonas uenonis
           60-3]
 gi|228307794|gb|EEK16750.1| electron transport complex protein RnfC [Porphyromonas uenonis
           60-3]
          Length = 412

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 95/277 (34%), Gaps = 32/277 (11%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++     + + +     +    +     II+ +   G+ G GGA F T +K S  P   +
Sbjct: 100 VEDDEWEEYIDQTD--TLVTETDLDAKQIIDRIAEMGIVGMGGATFPTHVKLSPPPGQSA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D   Y+++NA E EP    D  +MR +   ++ GC I   A  A    I +         
Sbjct: 158 D---YVIINAVECEPYLTSDDALMRVKAMEIMVGCAIIMKAANAPRTLIGIEVNKPDAIR 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            ++ A +        G          I V      Y  G E  L+++L  K+        
Sbjct: 215 IMRDAAERAKEFLPEGQ--------SISVVPLKKRYPQGGEKQLIDALIRKQV---ASGA 263

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            P + G       V NV +   +          Y    +      ++ +++G  + +P  
Sbjct: 264 LPISTG-----AIVQNVGTTFAI----------YEAVMKHKPLIERIITVTGRAIMHPSN 308

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
            +  +  +   LI+   G        +      GSS 
Sbjct: 309 FKARIGTSMQTLIDAAGGYAEEPGKIIGGGPMIGSST 345


>gi|168210001|ref|ZP_02635626.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170711860|gb|EDT24042.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           perfringens B str. ATCC 3626]
          Length = 436

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 112/350 (32%), Gaps = 69/350 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +N+    +     ++  VK  G+ G GGA F   +K +           Y+++NA E EP
Sbjct: 111 ENLKYSSKLSLKDVVKLVKDYGIVGLGGATFPCHVKLNV---KEDKEIKYIIINAAECEP 167

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      +I G  I          +I +    +   +  +            
Sbjct: 168 YLTCDHRVMLEYTEEIISGLRILLELFPKALIYIGIEDNKLNAIDKFK------------ 215

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
              S LG D  I V      Y  G E  L+ +L   +         P ++G       V 
Sbjct: 216 ---SILGEDNKIKVMPLKSKYPQGSEKHLIYALTKLQV---PSGKLPLDIG-----CIVF 264

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +I  +   L  G               ++ +++G  + +P  +   +     ++IE 
Sbjct: 265 NVSTIYQLYASLINGLPLT----------ERIITVTGDSIRFPKNLRVKIGTPVKDIIE- 313

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG          +I GG  +    +       +            GT+ ++ + +   
Sbjct: 314 FCGGFINKPSK---IILGGPMMG--TSINSLDLPITK----------GTSGILCLSKVD- 357

Query: 329 IIKAIWRLSVFYKHES-CGQCTPCREGTGWMM---RVMERLVKGIAQKRE 374
                          S C +C  C       +   ++ E  +KG   + E
Sbjct: 358 -----------TSPNSHCIRCGKCLNSCPMNLIPQKLNELALKGKLDEFE 396


>gi|302390222|ref|YP_003826043.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302200850|gb|ADL08420.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 429

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 90/258 (34%), Gaps = 47/258 (18%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           K    ++  +K +G+ G GGAGF T +K     +        ++ N  E EP    +   
Sbjct: 75  KETSSMLEAIKEAGIVGMGGAGFPTHVKMDVDLQ-----GGTVIANGVECEPLLSHNVRQ 129

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M   P  +  G   A     A   +I ++ +  +  E++++ +D                
Sbjct: 130 MEQNPEIVYRGLKYAMQITNASRGYIAIKAKNKKAVEAMKSVID---------------- 173

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  I V      Y  GEE AL+  + G+  +P   P              ++NVE+++ +
Sbjct: 174 DPRIEVREMPDIYPMGEERALVREILGQLLRPDQLPS--------AARAVISNVETLSRI 225

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNY----PCTVEESMSITFDELIEKHCGGI 273
              +           +     +K  ++ G +          +  +     ELIEK  G  
Sbjct: 226 CEAVE----------KRKPVISKNVTVIGRLKSGRQARVFFDVPIGTPIAELIEKAGG-- 273

Query: 274 RGGWDNLLAVIPGGSSVP 291
                +   +I GG    
Sbjct: 274 --FEGDFGEIIMGGPFTG 289


>gi|260581278|ref|ZP_05849096.1| electron transport complex protein rnfC [Haemophilus influenzae
           RdAW]
 gi|260092105|gb|EEW76050.1| electron transport complex protein rnfC [Haemophilus influenzae
           RdAW]
          Length = 807

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSSEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAIINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|145641063|ref|ZP_01796644.1| electron transport complex protein RnfC [Haemophilus influenzae
           R3021]
 gi|145274224|gb|EDK14089.1| electron transport complex protein RnfC [Haemophilus influenzae
           22.4-21]
          Length = 763

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSSEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAIINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|145639159|ref|ZP_01794766.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittII]
 gi|145271721|gb|EDK11631.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittII]
          Length = 651

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSSEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAIINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|16273572|ref|NP_439827.1| electron transport complex protein RnfC [Haemophilus influenzae Rd
           KW20]
 gi|17368309|sp|P71397|RNFC_HAEIN RecName: Full=Electron transport complex protein rnfC
 gi|1574537|gb|AAC23331.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 819

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSSEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAIINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|145629223|ref|ZP_01785022.1| electron transport complex protein RnfC [Haemophilus influenzae
           22.1-21]
 gi|144978726|gb|EDJ88449.1| electron transport complex protein RnfC [Haemophilus influenzae
           22.1-21]
 gi|309750739|gb|ADO80723.1| Electron transport complex protein RnfC [Haemophilus influenzae
           R2866]
          Length = 763

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 115/378 (30%), Gaps = 70/378 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               + +I+++  +G+ G GGA F T  K     +    +   L++N  E EP    D  
Sbjct: 130 TLSSEQLIHKIYQAGIAGLGGAVFPTAAK----IQSAEQKVKLLIINGAECEPYITCDDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I  + +      I +         +++ A+                
Sbjct: 186 LMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGAN------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              DI +      Y  G    L+  L G +          +++G+      + NV ++  
Sbjct: 234 ---DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIGV-----LMQNVGTMFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +                  ++ +++G  +         +     +++         
Sbjct: 283 IKRAIINDEPLI----------ERVVTLTGNKIAEKGNYWVRLGTPISQILSDAG----Y 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +D    +  GG  +               + L                    +      
Sbjct: 329 QFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCL--------------------LAPDYLE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICAL 393
            +     ++C +C+ C +      M + +    +    K+  +  Y +   IE   ICA 
Sbjct: 369 YAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEE--YALKDCIECG-ICAY 425

Query: 394 GDAAAWPIQGLIKNFRPL 411
              +  P   LI+ FR  
Sbjct: 426 VCPSHIP---LIQYFRQE 440


>gi|115525857|ref|YP_782768.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodopseudomonas palustris BisA53]
 gi|115519804|gb|ABJ07788.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodopseudomonas palustris BisA53]
          Length = 665

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%)

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
           WD ++     G++    P   ++    ++D   ++ +  G     V D +  I+ A++  
Sbjct: 9   WDGVVYDSRTGAADAKTPEYALQN-FDEFDDGNQIRAFFGDRGFFVFDATVSIVDALYHY 67

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
                 +SCG CTPCR GT  +   ++R+ + +     +D +  + + +   ++C LG +
Sbjct: 68  MTKAAEQSCGACTPCRMGTVLVRDALDRMRRSLGSTLSLDDIEMLGEQMRQTSLCGLGQS 127

Query: 397 AAWPIQGLIKNFRPLIEERI 416
            A  +  ++ NFR  IE  +
Sbjct: 128 CAVALLDVLHNFRDQIEAEL 147


>gi|313887919|ref|ZP_07821598.1| electron transport complex, RnfABCDGE type, C subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846085|gb|EFR33467.1| electron transport complex, RnfABCDGE type, C subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 444

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 104/316 (32%), Gaps = 58/316 (18%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  +K  G+ G GGAGF    K         +     ++N  E EP    D  IM  
Sbjct: 126 DDLIPFIKEKGIVGMGGAGFPLHAKLKSEDPALDEC----IINGAECEPFLTCDHRIMLE 181

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
           +   ++EG  I S+      +++ +          ++  +         G N    +   
Sbjct: 182 KTEEILEGLDIFSYYYNKEASYMAIEENKPDAIAKMEEVI---------GENPNWKH--- 229

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + V      Y  G+   L E++ G +  P+       +VG++     + NV +       
Sbjct: 230 LKVVGCQTKYPQGDSKRLSEAVVG-RIVPQNGV--TNDVGVF-----LTNVGTTLAFYEA 281

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           +  G   Y      +  G         +  P  +   +     +++   CGG++   DN 
Sbjct: 282 MIEGKPSYERVITVSGSG---------IKEPKNILVKIGTPVGDIL-DFCGGVK---DNF 328

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
             +I GG       +     + +             T+ ++V        +   R+    
Sbjct: 329 KEIICGGPMTG--KSVFNLDSPVTKT----------TSGILVFTEE----EVTERI---- 368

Query: 341 KHESCGQCTPCREGTG 356
               C +C+ C +   
Sbjct: 369 -ESPCIRCSRCVDHCP 383


>gi|260587819|ref|ZP_05853732.1| Na(+)-translocating NADH-quinone reductase, A subunit [Blautia
           hansenii DSM 20583]
 gi|260542084|gb|EEX22653.1| Na(+)-translocating NADH-quinone reductase, A subunit [Blautia
           hansenii DSM 20583]
          Length = 440

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 98/273 (35%), Gaps = 41/273 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  +K +G+ G GGAGF T +K S       D+  Y++VN  E EP    D  
Sbjct: 118 ELTKEEIIGRIKDAGVVGMGGAGFPTHVKLS---PKEPDKIEYVLVNGAECEPYLTSDYR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M  +P  +I G             +I +        E L   V +              
Sbjct: 175 RMLEQPDWIIGGLKCILKLFDHAKGYICIEDNKPDCIEKLTELVKD-------------- 220

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            +  I V      Y  G E  L+ ++ G++    +    PA+ G       V+N++++  
Sbjct: 221 -EPRIEVAPLKTKYPQGAERCLIAAVSGREINSSM---LPADAG-----CVVDNIDTVCA 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   + +G               ++ +++G  V  P   +  +  +F EL+E+  G    
Sbjct: 272 VYRAVMKGEPVMD----------RIVTVTGDAVAEPGNFKVRLGTSFAELLEEAGG---- 317

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
                  +I GG  +           +     L
Sbjct: 318 LKTPAKKIISGGPMMGFAMFDYHVPVVKTSSAL 350


>gi|260891188|ref|ZP_05902451.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           hofstadii F0254]
 gi|260859215|gb|EEX73715.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           hofstadii F0254]
          Length = 464

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 109/358 (30%), Gaps = 66/358 (18%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            ++ I + +K +G+ G GGA F T +K+    +        L++N  E EP    D  +M
Sbjct: 150 KKEEIFSIIKEAGIVGLGGAQFPTHVKYDIKFRKVD----TLIINGAECEPYLTSDYSVM 205

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           ++    +I G  +    +      I +  E     E ++                     
Sbjct: 206 KNHTKEIINGLKVIQKLLNPKEVVIGIEEENRELVEVIEE--------------MGRKEK 251

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I V      Y  G E  L+ ++ G K +   K   P   G+      V+NV ++  + 
Sbjct: 252 FQIKVKLLPTIYPQGSELQLINTVTGIKVR---KGELPLEKGV-----VVSNVSTVKAIY 303

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
                G               ++ +ISG                   +++      R   
Sbjct: 304 DAFFEG----------KPLIERVVTISGEEARNIGNYRIKFGTPLYHIVK------RLKI 347

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI---VMDRSTDIIKAIW 334
            N   VI GG  +           I    G+      L T  +     +     +     
Sbjct: 348 TNEEKVIFGGPMMGIEVFDSRVPVIKGTSGI----LFLSTEEIERNNCISCGYCVEACPM 403

Query: 335 RLSVF-YKH---------------ESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
            L  F +                 ++C +C  C       + +ME +  G A   E++
Sbjct: 404 NLMPFEFADYYEKGKYEKMVKANIQNCIECGACEFVCPSRVPLMESIKTGKAVLSEME 461


>gi|226944038|ref|YP_002799111.1| electron transport complex protein RnfC [Azotobacter vinelandii DJ]
 gi|226718965|gb|ACO78136.1| Electron transport complex, subunit C [Azotobacter vinelandii DJ]
          Length = 688

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 112/367 (30%), Gaps = 74/367 (20%)

Query: 15  LQGKSLSDSMSRGHWDNVDKI---LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
           +    L +      W  ++            ++  ++ +G+ G GGAGF T +K +  P+
Sbjct: 104 IDSDGLDE------WTALEPCADHRSLEPAILLERIRQAGISGLGGAGFPTAVKLTARPQ 157

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
                 H L+VN  E EP    D  +MR     LI G  I    I      I +      
Sbjct: 158 RK---IHTLIVNGAECEPYITADDRLMRERAAELIIGIDILVQLIEPEQVLIGIEDNKPE 214

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              +++AA+ E                  + V      Y  G E  L+E L G++     
Sbjct: 215 AVAAVRAALGER--------------SFGLRV--LPTKYPSGGERQLIEILTGRQV---P 255

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNY 250
               PA++G+        NV +   +   +  G              +++ +++G  +  
Sbjct: 256 SGGLPADIGM-----LCQNVGTCVAIHDTVLLG----------RPLISRIVTLTGEALAR 300

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS---------SVPCLPAGQMRGA 301
           P  VE  +     EL+    G      D L   I GG           VP +       A
Sbjct: 301 PMNVEALLGTPVGELL-AFAGLDEARMDRL---IMGGPMMGFTLSSLDVPLIKTANCLLA 356

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK----HES--------CGQCT 349
               +      +                   + +   F+     HE         C +C 
Sbjct: 357 PTRSELPPPPPALPCIR--CGACADVCPASLLPQQLHFFALGREHEQLRAYNLFDCIECG 414

Query: 350 PCREGTG 356
            C     
Sbjct: 415 ACAYVCP 421


>gi|240146042|ref|ZP_04744643.1| Na(+)-translocating NADH-quinone reductase, A subunit [Roseburia
           intestinalis L1-82]
 gi|257201858|gb|EEV00143.1| Na(+)-translocating NADH-quinone reductase, A subunit [Roseburia
           intestinalis L1-82]
 gi|291536100|emb|CBL09212.1| electron transport complex, RnfABCDGE type, C subunit [Roseburia
           intestinalis M50/1]
 gi|291539041|emb|CBL12152.1| electron transport complex, RnfABCDGE type, C subunit [Roseburia
           intestinalis XB6B4]
          Length = 441

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 107/324 (33%), Gaps = 58/324 (17%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
           + +    ++ II +VK +G+ G GGAGF T +K S       ++  Y++ N  E EP   
Sbjct: 114 EDVTALSKEEIIGKVKEAGVVGMGGAGFPTHVKLS---PKEPEKIEYIIANCAECEPYLT 170

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D   M   P  LI G  I             +        E LQ  V +          
Sbjct: 171 ADYRRMLENPEELIGGMKIILQIFDKAKGVFGIENNKPDCIEKLQELVKD---------- 220

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                +  I V      Y  G E  L+ ++ G+    ++    PA+ G       V+NVE
Sbjct: 221 -----EPRIEVCPLETKYPQGGERQLIYAVTGRSINSKM---LPADAG-----CIVDNVE 267

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           +I  +   ++ G    +                  V +P     ++  ++ EL+    GG
Sbjct: 268 TIIAIYNAVKLGKPVTNRISTI---------TGDAVEHPGNFLYNIGTSYQELV-DAAGG 317

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
            +   +    +I GG  +    A                          ++  S D + A
Sbjct: 318 FKVQPEK---IISGGPMMGF--AMFGLDVPTTKTSSS------------LLCMSQDEVAA 360

Query: 333 IWRLSVFYKHESCGQCTPCREGTG 356
             +L       +C  C  C E   
Sbjct: 361 AEKL-----QTACINCGRCVEACP 379


>gi|226947085|ref|YP_002802158.1| RnfABCDGE type electron transport complex subunit C [Azotobacter
           vinelandii DJ]
 gi|17865302|gb|AAL47174.1|AF450501_4 RnfC [Azotobacter vinelandii]
 gi|226722012|gb|ACO81183.1| Electron transport complex, RnfABCDGE type, C subunit [Azotobacter
           vinelandii DJ]
          Length = 496

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 111/329 (33%), Gaps = 62/329 (18%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
             +    + + V  +G+ G GGA F   +K     +        ++VN  E EP    D 
Sbjct: 121 FAEDPLVLADRVAKAGIVGLGGAIFPAAVKLK---QGTRHEIKTVLVNGSECEPYLTCDD 177

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            IMR     +++G  +    + A+   I +         +++AA +   A          
Sbjct: 178 RIMRERAEAIVDGARLIQHILRAYSVVIAIEDNKPEALAAMRAAAEHFGA---------- 227

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
                I V      Y  G    L++++ G++           +VG+      V+N  ++ 
Sbjct: 228 -----IEVMAVPALYPMGSAKQLIQAVTGREV---PAGGRSTDVGV-----LVHNAGTVY 274

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            +   LR G              +++ ++SG  V  P  ++  +      LI   CGG+ 
Sbjct: 275 AIQQALRFG----------RPLISRVVTVSGACVKTPQNLDVLIGTPVQALI-DACGGLS 323

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
           G    LL    GG                       MG+ L +  V V+  +T ++    
Sbjct: 324 GDPQQLLL---GGP---------------------MMGAVLPSTEVPVIKGATGLLALAR 359

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMRVME 363
                     C +C  C +     +  ++
Sbjct: 360 HELPNKDPAPCIRCASCVDACPMGLTPLD 388


>gi|224541300|ref|ZP_03681839.1| hypothetical protein CATMIT_00460 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525737|gb|EEF94842.1| hypothetical protein CATMIT_00460 [Catenibacterium mitsuokai DSM
           15897]
          Length = 402

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 109/330 (33%), Gaps = 61/330 (18%)

Query: 28  HWDNVDKIL-EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
            ++  +  +     +  I +VK +G+ G GGAGF T +K +       ++  Y++VN  E
Sbjct: 72  DYEAHENNIDTLTFEEKIEKVKNAGVVGLGGAGFPTHVKLNV---KEPEKIEYVIVNGAE 128

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EP    D  +M      LIEG  I          +I +         +L+   +     
Sbjct: 129 CEPYLTSDYRLMLERSKELIEGLKIMLTLYPHAVGYIGIEDNKKEAIHTLEKLCEHEE-- 186

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                         I V      Y  G E  L+E+L G++   ++    P +VG      
Sbjct: 187 -------------RISVKVLKTKYPQGGERMLIEALTGRRLNSKM---LPLDVG-----C 225

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            V+NV ++  +   ++      S        G         VN PC VE  +   F  ++
Sbjct: 226 IVDNVATVLAIRDAIKYDRPLISTVMTLTGEG---------VNTPCNVEVPVGTDFQFIV 276

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           E   G        +      GSS+  L                 + +   +++++     
Sbjct: 277 ESRGGLKENVEKIISGGPMMGSSLISL----------------HIPAIKTSSSILAFTHD 320

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
               +            +C +C  C +   
Sbjct: 321 ----EVALN-----TPTACIRCGRCIDACP 341


>gi|254361779|ref|ZP_04977914.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|261494020|ref|ZP_05990523.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496221|ref|ZP_05992627.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153093314|gb|EDN74310.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|261308173|gb|EEY09470.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310186|gb|EEY11386.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 764

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 105/328 (32%), Gaps = 62/328 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             ++  L    D II +V   G+ G GGA F T  K S   K C      LV+N  E EP
Sbjct: 130 QPIEDFLSLTSDQIIQKVYQYGIAGLGGAVFPTATKLSLADKRC----KLLVINGAECEP 185

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     LIEG  I  + +      I +        ++L+ A+         
Sbjct: 186 YITCDDRLMQDFTADLIEGIRILRYVLRPEEVVIAIEDNKPHAIQALETALK-------- 237

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
           GSN       D+ V      Y  G    L++ L G +            +G+      ++
Sbjct: 238 GSN-------DMFVRAIPTKYPSGASDQLIQVLTGLEI---PAGKRTIEMGI-----VMH 282

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   +                  ++ +++G  +     V   +      L+E+
Sbjct: 283 NVGTAFAVKRAIIDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPIQHLLEQ 332

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                    D    V  GG  +  +              L  + + +   A  ++     
Sbjct: 333 VD----YQADKRFPVFLGGPMMGFI--------------LPALQAPITKTANCLIAPDH- 373

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG 356
                +  +      SC +C+ C +   
Sbjct: 374 -----FEYAPPEPERSCIRCSSCSDACP 396


>gi|160890330|ref|ZP_02071333.1| hypothetical protein BACUNI_02771 [Bacteroides uniformis ATCC 8492]
 gi|270296899|ref|ZP_06203098.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156860062|gb|EDO53493.1| hypothetical protein BACUNI_02771 [Bacteroides uniformis ATCC 8492]
 gi|270272886|gb|EFA18749.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 445

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 120/347 (34%), Gaps = 64/347 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++G    +S+ R   + + K      + I+ ++  +G+ G GGA F T +K    P   +
Sbjct: 100 VEGDEWEESIDRS--ETLVKECSLTSEEIVKKIADAGIVGLGGACFPTQVKLCPPPAFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M      ++ G  I   A+  + AFI +        +
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIQ 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +   V   YA               I V      Y  G E  L++++  ++      P 
Sbjct: 215 LMTK-VASSYAG--------------IEVVPLKVQYPQGGEKQLIDAVISRQVAAGALPI 259

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
                        V NV +   V   ++          +      ++ +++G  +  P  
Sbjct: 260 STG--------AVVQNVGTAFAVYQAVQ----------KNKPLFERVITVTGKSLAKPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +     +LIE  CGG+    ++   +I GG  +    A                 +
Sbjct: 302 FLARIGTPMKQLIE-ACGGL---PEDTGKIIGGGPMMG--KALVNTDVP----------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             G++ +++M+      K   R  V    + C +C  C       + 
Sbjct: 346 AKGSSGILIMNE-----KEAKRGEV----QPCIRCAKCVGACPMGLE 383


>gi|332140732|ref|YP_004426470.1| electron transport complex protein RnfC [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550754|gb|AEA97472.1| electron transport complex protein RnfC [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 852

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 102/317 (32%), Gaps = 63/317 (19%)

Query: 42  WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
            +I  +  +G+ G GGAGF T +K        S    +L++N  E EP    D  +MR  
Sbjct: 139 ELIEAICQAGISGMGGAGFPTHIK-----TSTSKPVEFLILNGIECEPYITSDDRLMREH 193

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
              + +G  I +  IG     + V        E+L  A  +                   
Sbjct: 194 AWQIRQGLDILTHLIGPKAIIVAVEDNKPEAFEALSIACQDKKEY--------------- 238

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V +    Y  G E  L++ + G +  PR     PA++G+      + NV +   +   +
Sbjct: 239 RVVNVETKYPAGGEKQLIQVITG-REVPRNG--LPADIGV-----MMFNVGTCFAIADAI 290

Query: 222 RRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
             G               ++ +++G  V  P      +      L+++            
Sbjct: 291 LHG----------KPLIERIVTVTGEAVESPSNFRALIGTPVSHLLDEAK--YNPKKQKK 338

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD-IIKAIWRLSVF 339
             V+ GG  +                        L  A + V+  +   ++ A   L   
Sbjct: 339 PKVVMGGPMMGF---------------------TLSDATIPVIKTTNCLLVPAKKELVDD 377

Query: 340 YKHESCGQCTPCREGTG 356
                C +C+ C +   
Sbjct: 378 NAERPCIRCSACADACP 394


>gi|300114448|ref|YP_003761023.1| electron transport complex RnfABCDGE type subunit C [Nitrosococcus
           watsonii C-113]
 gi|299540385|gb|ADJ28702.1| electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus watsonii C-113]
          Length = 515

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 106/321 (33%), Gaps = 64/321 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     + N ++ +G+ G GGAGF   +K +  P         L++N  E EP    D  
Sbjct: 123 QLDPSHLRNLIRRAGIVGLGGAGFPAFIKLNPGPHPK---VKTLILNGAECEPYITCDEA 179

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +I+G  I + A+  H   I +  +      +L AA  E              
Sbjct: 180 LMRERAEEIIQGAAIMAHALNVHHCLIGIEDDKPEAYTTLAAAATEG------------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I        Y  G E  L++ L G++         P ++G+       +NV + A 
Sbjct: 227 ----IEAISIPTCYPAGGEKQLIKVLTGQEVPSNG---LPIDIGV-----VCHNVGTAAA 274

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   + RG    S          ++ +++G  V  P  +E  +      L+         
Sbjct: 275 VYRAIHRGEPLLS----------RIVTVTGKAVARPGNLEVLLGTPIRHLLALQD----T 320

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               +  +I GG  +      +    I   + L           +  +  +T    A+  
Sbjct: 321 DIQGIDRLIMGGPMMGFTLHDEEAPVIKTTNCL-----------LAGLYENTHHPPAM-- 367

Query: 336 LSVFYKHESCGQCTPCREGTG 356
                    C +C  C E   
Sbjct: 368 --------PCIRCGACVEACP 380


>gi|219871790|ref|YP_002476165.1| electron transport complex protein RnfC [Haemophilus parasuis
           SH0165]
 gi|219691994|gb|ACL33217.1| electron transport complex protein RnfC/NADH:ubiquinone
           oxidoreductase, subunit RnfC [Haemophilus parasuis
           SH0165]
          Length = 666

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 125/395 (31%), Gaps = 77/395 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +D  L      II +V  +G+ G GGA F T  K     K C      L++N  E EP
Sbjct: 124 QPIDDFLSLTSGQIIQKVYQAGIAGLGGAVFPTSHKLHVADKRC----KLLIINGAECEP 179

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     +IEG  I  + +      I +     +  ++++ A+         
Sbjct: 180 YITCDDRLMQDYADEMIEGVRILRYVLRPEEVVIAIEDNKPKAIQAVEKALKGAN----- 234

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     DI V      Y  G    L++ L G +     +      +G+      ++
Sbjct: 235 ----------DISVRVIPTKYPSGASDQLVQVLTGLEI---PQGKRTIEMGI-----MMH 276

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   +                  ++ +++G  +     V   +      L+E+
Sbjct: 277 NVGTAFAVKRAVMDDEPLI----------ERVVTLTGDKIRNKGNVWARLGTPILHLLEQ 326

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                    D    V  GG  +  +              L  + S +   A  ++     
Sbjct: 327 VD----YQADERFPVFLGGPMMGFI--------------LPSLQSPITKTANCIIAPDH- 367

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
                +  +      +C +C+ C +      + + +    +     +  +  Y +   IE
Sbjct: 368 -----FEYAPPEPERNCIRCSSCSDACPVGLLPQQLYWFARAEDHDKSKE--YHLDACIE 420

Query: 387 GRTICALGDAAAWPIQG---LIKNFRPLIEERIDQ 418
               C      A+       LI+ FR   + +I +
Sbjct: 421 ----CG---VCAYVCPSYIPLIQYFRQE-KAKIQE 447


>gi|153829524|ref|ZP_01982191.1| electron transport complex protein RnfC [Vibrio cholerae 623-39]
 gi|148874984|gb|EDL73119.1| electron transport complex protein RnfC [Vibrio cholerae 623-39]
          Length = 853

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 130 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +                         +  +  
Sbjct: 186 LMRQYAHEIIQGIEIVEHILKPKLTVIGIEDNKPEAVA----------------ALQQAA 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  +++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 230 QDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 282 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 367

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 368 ELTSSDNEMACIRCGQCAEACP 389


>gi|224539451|ref|ZP_03679990.1| hypothetical protein BACCELL_04356 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518956|gb|EEF88061.1| hypothetical protein BACCELL_04356 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 444

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 126/347 (36%), Gaps = 64/347 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           + G    +S+ R   + + +      + I+ ++  +G+ G GGA F T +K    P   +
Sbjct: 100 VDGDEWEESIDRT--ETLVRECNLTSEEIVKKIANAGIVGLGGACFPTQVKLCPPPAFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M      ++ G  I   A+  + AFI +        +
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIQ 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +   V   YA               I V      Y  G E  L++++  ++        
Sbjct: 215 LMAK-VASSYAG--------------IEVVALKVQYPQGGEKQLIDAITSRQV---ASGA 256

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
            P + G       V NV +   V   ++          +      ++ +++G  V  P  
Sbjct: 257 LPISTG-----AVVQNVGTAFAVYQAVQ----------KNKPLFERVITVTGKSVAKPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +     +LI   CGG+    ++   +I GG          M  A+++     E+ +
Sbjct: 302 FLARIGTPMKQLI-DACGGL---PEDTGKIIGGGP--------MMGKALVN----TEVPT 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             G++ +++M++     K   R  V    + C +C  C       + 
Sbjct: 346 AKGSSGILIMNQ-----KEAKRGEV----QPCIRCAKCVGACPMGLE 383


>gi|153824972|ref|ZP_01977639.1| RnfC-related protein [Vibrio cholerae MZO-2]
 gi|149741484|gb|EDM55514.1| RnfC-related protein [Vibrio cholerae MZO-2]
          Length = 853

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 103/331 (31%), Gaps = 70/331 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E 
Sbjct: 127 DYQQL------SPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAEC 176

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR   H +I+G  I    +      I +                      
Sbjct: 177 EPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA------------- 223

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
              +  +   D  +++      Y  G E  L++ L   +     K   PA++GL      
Sbjct: 224 ---ALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----M 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV S+  +   +  G               ++ +++G     P  V   +      L+
Sbjct: 273 VQNVGSLQAIARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +           L  +I GG  +                        L  A V +   +
Sbjct: 323 NEFGY---KADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTA 358

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
             I+           +E +C +C  C E   
Sbjct: 359 NCILAPTRNELTSSDNEMACIRCGQCAEACP 389


>gi|153800907|ref|ZP_01955493.1| RnfC-related protein [Vibrio cholerae MZO-3]
 gi|124123498|gb|EAY42241.1| RnfC-related protein [Vibrio cholerae MZO-3]
          Length = 853

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 130 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +                         +  +  
Sbjct: 186 LMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA----------------ALQQAA 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  +++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 230 QDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 282 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 367

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 368 ELTSSDNEMACIRCGQCAEACP 389


>gi|262191542|ref|ZP_06049725.1| electron transport complex protein RnfC [Vibrio cholerae CT
           5369-93]
 gi|262032596|gb|EEY51151.1| electron transport complex protein RnfC [Vibrio cholerae CT
           5369-93]
          Length = 814

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 103/331 (31%), Gaps = 70/331 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E 
Sbjct: 127 DYQQL------SPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAEC 176

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR   H +I+G  I    +      I +                      
Sbjct: 177 EPYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA------------- 223

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
              +  +   D  +++      Y  G E  L++ L   +     K   PA++GL      
Sbjct: 224 ---ALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----M 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV S+  +   +  G               ++ +++G     P  V   +      L+
Sbjct: 273 VQNVGSLQAIARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +           L  +I GG  +                        L  A V +   +
Sbjct: 323 NEFGY---KADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTA 358

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
             I+           +E +C +C  C E   
Sbjct: 359 NCILAPTRNELTSSDNEMACIRCGQCAEACP 389


>gi|121729986|ref|ZP_01682403.1| RnfC-related protein [Vibrio cholerae V52]
 gi|147674223|ref|YP_001216487.1| electron transport complex protein RnfC [Vibrio cholerae O395]
 gi|262167228|ref|ZP_06034940.1| electron transport complex protein RnfC [Vibrio cholerae RC27]
 gi|121628272|gb|EAX60785.1| RnfC-related protein [Vibrio cholerae V52]
 gi|146316106|gb|ABQ20645.1| RnfC-related protein [Vibrio cholerae O395]
 gi|262024372|gb|EEY43061.1| electron transport complex protein RnfC [Vibrio cholerae RC27]
          Length = 773

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 130 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +                         +  +  
Sbjct: 186 LMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA----------------ALQQAA 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  +++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 230 QDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 282 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 367

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 368 ELTSSDNEMACIRCGQCAEACP 389


>gi|254848145|ref|ZP_05237495.1| electron transport complex protein RnfC [Vibrio cholerae MO10]
 gi|298498872|ref|ZP_07008679.1| electron transport complex protein RnfC [Vibrio cholerae MAK 757]
 gi|254843850|gb|EET22264.1| electron transport complex protein RnfC [Vibrio cholerae MO10]
 gi|297543205|gb|EFH79255.1| electron transport complex protein RnfC [Vibrio cholerae MAK 757]
          Length = 776

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 132 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 187

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +                         +  +  
Sbjct: 188 LMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA----------------ALQQAA 231

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  +++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 232 QDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 283

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 284 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 330

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 331 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 369

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 370 ELTSSDNEMACIRCGQCAEACP 391


>gi|121587381|ref|ZP_01677151.1| RnfC-related protein [Vibrio cholerae 2740-80]
 gi|153819295|ref|ZP_01971962.1| RnfC-related protein [Vibrio cholerae NCTC 8457]
 gi|153823435|ref|ZP_01976102.1| RnfC-related protein [Vibrio cholerae B33]
 gi|255745440|ref|ZP_05419388.1| electron transport complex protein RnfC [Vibrio cholera CIRS 101]
 gi|262151308|ref|ZP_06028443.1| electron transport complex protein RnfC [Vibrio cholerae INDRE
           91/1]
 gi|17369132|sp|Q9KT88|RNFC_VIBCH RecName: Full=Electron transport complex protein rnfC
 gi|121548384|gb|EAX58446.1| RnfC-related protein [Vibrio cholerae 2740-80]
 gi|126510155|gb|EAZ72749.1| RnfC-related protein [Vibrio cholerae NCTC 8457]
 gi|126519044|gb|EAZ76267.1| RnfC-related protein [Vibrio cholerae B33]
 gi|255736515|gb|EET91912.1| electron transport complex protein RnfC [Vibrio cholera CIRS 101]
 gi|262030924|gb|EEY49553.1| electron transport complex protein RnfC [Vibrio cholerae INDRE
           91/1]
          Length = 774

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 130 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +                         +  +  
Sbjct: 186 LMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA----------------ALQQAA 229

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  +++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 230 QDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 282 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 328

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 329 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 367

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 368 ELTSSDNEMACIRCGQCAEACP 389


>gi|229525628|ref|ZP_04415033.1| electron transport complex protein RnfC [Vibrio cholerae bv.
           albensis VL426]
 gi|229339209|gb|EEO04226.1| electron transport complex protein RnfC [Vibrio cholerae bv.
           albensis VL426]
          Length = 841

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 157 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 212

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +                         +  +  
Sbjct: 213 LMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA----------------ALQQAA 256

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  +++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 257 QDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 308

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 309 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 355

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 356 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 394

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 395 ELTSSDNEMACIRCGQCAEACP 416


>gi|227012832|gb|ACP09042.1| RnfC-related protein [Vibrio cholerae O395]
          Length = 800

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 157 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 212

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +                         +  +  
Sbjct: 213 LMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA----------------ALQQAA 256

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  +++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 257 QDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 308

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 309 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 355

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 356 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 394

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 395 ELTSSDNEMACIRCGQCAEACP 416


>gi|15641030|ref|NP_230661.1| electron transport complex protein RnfC [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|227081189|ref|YP_002809740.1| RnfC-related protein [Vibrio cholerae M66-2]
 gi|229505386|ref|ZP_04394896.1| electron transport complex protein RnfC [Vibrio cholerae BX 330286]
 gi|229510944|ref|ZP_04400423.1| electron transport complex protein RnfC [Vibrio cholerae B33]
 gi|229608405|ref|YP_002879053.1| electron transport complex protein RnfC [Vibrio cholerae MJ-1236]
 gi|9655479|gb|AAF94176.1| RnfC-related protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227009077|gb|ACP05289.1| RnfC-related protein [Vibrio cholerae M66-2]
 gi|229350909|gb|EEO15850.1| electron transport complex protein RnfC [Vibrio cholerae B33]
 gi|229357609|gb|EEO22526.1| electron transport complex protein RnfC [Vibrio cholerae BX 330286]
 gi|229371060|gb|ACQ61483.1| electron transport complex protein RnfC [Vibrio cholerae MJ-1236]
          Length = 801

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 157 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 212

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +                         +  +  
Sbjct: 213 LMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA----------------ALQQAA 256

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  +++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 257 QDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 308

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 309 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 355

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 356 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 394

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 395 ELTSSDNEMACIRCGQCAEACP 416


>gi|296132158|ref|YP_003639405.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermincola sp. JR]
 gi|296030736|gb|ADG81504.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermincola potens JR]
          Length = 440

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/292 (19%), Positives = 91/292 (31%), Gaps = 54/292 (18%)

Query: 69  MPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
             K    +   +VVN  E EP    D+ +M  E   L +  +      GA      ++ +
Sbjct: 24  AYKKLDAKVDVVVVNGAECEPLLRVDQQLMEKEARFLTDSLLKVLEITGASKGIFALKAK 83

Query: 129 FIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQ 188
           +    E+L+ A+               G    I +      Y  G+E  LL    G +  
Sbjct: 84  YTAAVEALEKAIK------------GSG---KIELKLLGDFYPAGDEQVLLYEATG-RIV 127

Query: 189 PRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHV 248
           P  +   P +VG       V NVE++  V   L                  K  +++G V
Sbjct: 128 P--EGGIPVHVG-----AVVTNVETLLNVGHALA-----------GKPVTEKYVTVTGAV 169

Query: 249 NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
             P TV+  + I+  EL+E               VI GG  +  +         +     
Sbjct: 170 EKPLTVKVPVGISVRELVE-----TANPVPEKYKVIEGGPMMGTVLENP--DKPVTKI-- 220

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY---KHESCGQCTPCREGTGW 357
                   T  +IV+  +  ++                 C QC  C E    
Sbjct: 221 --------TKGLIVLPENHSLLARKEITMAHTLNRARSVCCQCNKCTEICPR 264


>gi|182413872|ref|YP_001818938.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177841086|gb|ACB75338.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Opitutus terrae PB90-1]
          Length = 441

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 60/333 (18%), Positives = 101/333 (30%), Gaps = 68/333 (20%)

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           + +   ++ N  E EP   KD  +M      L+ G  +A  A+GA    + ++ +    +
Sbjct: 27  AGKADVVIANGAECEPLLHKDAAVMERNARDLVTGLQLAMEAVGATTGIVGLKAKNQHAQ 86

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           E++  A                     I +H     Y  G+E  L+ +  G+   P    
Sbjct: 87  EAVTEACRGT----------------TIRIHLLGDYYPAGDEYDLVYTTTGRLIPP---A 127

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
             P NVG       V+NVE++  +                      K  +I+G V  P T
Sbjct: 128 GIPLNVG-----AVVSNVETLVNIAAAAE-----------GRPVTHKTLTIAGAVAAPAT 171

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +   +  T    ++   G         +  +  G +   L         +          
Sbjct: 172 LTVPLGTTLRACLDAAGGPTVLDPVLCIGGMMMGETTTDL------DRPVTKT------- 218

Query: 314 GLGTAAVIVMDRSTDIIKAIWR---LSVFYKHESCGQCTPCREGTGWM--------MRVM 362
              T  VIV+ RS  II+   +   L       +C QC  C E              +VM
Sbjct: 219 ---TGGVIVLPRSHRIIQRKLKPATLQHAIGKSACDQCRYCTEYCPRFLLGYAVEPHQVM 275

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
             L          +    +         C L  
Sbjct: 276 RSLAFTATGAAHWNDWAALC------CACGLCT 302


>gi|85860862|ref|YP_463064.1| electron transport complex protein, NADH-binding subunit
           [Syntrophus aciditrophicus SB]
 gi|85723953|gb|ABC78896.1| electron transport complex protein, NADH-binding subunit
           [Syntrophus aciditrophicus SB]
          Length = 439

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 110/331 (33%), Gaps = 64/331 (19%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            W  +          ++ ++K  G+ G GGAGF   +K S  P    D    LV+N  E 
Sbjct: 116 DWRGL------SPQELLQKIKDGGIVGIGGAGFPAHVKLSPPPDAKVD---TLVLNGAEC 166

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +M  +P  ++EG  I    +G    +I V        ++L+  +++    G
Sbjct: 167 EPYLTCDHRVMLEKPEEVVEGAKILLHVLGIKDCYIGVESNKNDAIDALRKTIEQQKLDG 226

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                      V I V      Y  G E  L+ES  G+K         P +VG+      
Sbjct: 227 -----------VKIQVSPLKVKYPQGSEKQLIESTTGRKV---PGGGLPFDVGV-----I 267

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV +   V          +           K+ +ISG  ++ P  ++  +     +++
Sbjct: 268 VQNVGTAKAV----------FDAVVLNKPLYEKVITISGRGISRPANLQVRIGTRIRDIV 317

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           E   G       +L  ++ GG  +    A       +             +  + +    
Sbjct: 318 EYLGG----TKADLAKIVMGGPMMGF--AVSSLDIPVTK---------TCSGILFLTRDE 362

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
            D           Y    C +C  C E    
Sbjct: 363 ID--------EQPYGP--CIRCGWCVEACPM 383


>gi|262402646|ref|ZP_06079207.1| electron transport complex protein RnfC [Vibrio sp. RC586]
 gi|262351428|gb|EEZ00561.1| electron transport complex protein RnfC [Vibrio sp. RC586]
          Length = 830

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 102/331 (30%), Gaps = 70/331 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E 
Sbjct: 127 DYQQL------SPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAEC 176

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR     +I+G  I    +      I +                      
Sbjct: 177 EPYITADDVLMRQYAQEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA------------- 223

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
              +  +   D  +++      Y  G E  L++ L   +     K   PA++GL      
Sbjct: 224 ---ALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----L 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV S+  +   +  G               ++ +++G     P  V   +      L+
Sbjct: 273 VQNVGSLQAIARAILHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +    +      L   I GG  +                        L  A V +   +
Sbjct: 323 NEFGYKVDKKLPRL---IMGGPMMGF---------------------TLPHAQVPITKTA 358

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
             I+           HE +C +C  C +   
Sbjct: 359 NCILAPTRNELTSSDHEMACIRCGQCADACP 389


>gi|167759873|ref|ZP_02432000.1| hypothetical protein CLOSCI_02236 [Clostridium scindens ATCC 35704]
 gi|167662492|gb|EDS06622.1| hypothetical protein CLOSCI_02236 [Clostridium scindens ATCC 35704]
          Length = 442

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 88/248 (35%), Gaps = 36/248 (14%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPH 103
           +  VK +G+ G GGAGF TG+K             Y++VNA E EPG   +   +  +  
Sbjct: 79  LEMVKEAGIVGMGGAGFPTGVKIGTDL-----HGGYILVNAAECEPGLRHNIQQIEEKTD 133

Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV 163
             I G         A    I ++ +  +  E L+ A+ +               + +I +
Sbjct: 134 ITIRGLKYCMEISNAAKGIIAIKKKNEKAIEFLREAIKD---------------EDNITI 178

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
           H     Y  GEE A++    GK   P  + P  A+         V N E++  +   +  
Sbjct: 179 HLLPDIYPMGEERAVVRECLGKLLDP-TQLPSAADA-------VVINCETLLRIAEAIEL 230

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTV-EESMSITFDELIEKHCGGIRGGWDNLLA 282
               +       ++   +       N P    +  +     ++IEK  G      + ++ 
Sbjct: 231 KKPCF-------SKNMTVIGKINGGNEPHVFMDVPVGTCVADMIEKAGGIDGTYGEIIMG 283

Query: 283 VIPGGSSV 290
               G S 
Sbjct: 284 GAFTGKST 291


>gi|160935623|ref|ZP_02082998.1| hypothetical protein CLOBOL_00513 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441367|gb|EDP19077.1| hypothetical protein CLOBOL_00513 [Clostridium bolteae ATCC
           BAA-613]
          Length = 441

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 109/320 (34%), Gaps = 62/320 (19%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             ++ I N VK +G+ G GGAGF T +K +   +   +   Y++VN  E EP    D  +
Sbjct: 120 LSKEEIRNIVKEAGIVGLGGAGFPTHVKLTPKDENAIE---YILVNGAECEPYLTSDYRM 176

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M  EP  ++ G  +           I +        + L   V +               
Sbjct: 177 MLEEPEKIVGGLKVILQLFDNAKGVIGIENNKPEAIKKLTEMVKD--------------- 221

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           +  I V      Y  G E +L+ ++ G+K    +    PA+ G       V+NV+++  +
Sbjct: 222 EPRITVCPLMTKYPQGGERSLIYAVTGRKVNSSM---LPADAG-----CIVDNVDTVISI 273

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              + +                K+ +++G  V  P      +   + EL+    GG +  
Sbjct: 274 YMAVCKSTPLMR----------KIITVTGDAVADPRNFSVKLGTNYQELL-DAAGGFKTE 322

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            + +L       S   +    +    +             ++A+    +   + +     
Sbjct: 323 PEKVL-------SGGPMMGQAIFDLNIPVS--------KTSSALTCFTK-DQVAEM---- 362

Query: 337 SVFYKHESCGQCTPCREGTG 356
               +  +C +C  C     
Sbjct: 363 ----EPSACIRCGKCVSVCP 378


>gi|237653653|ref|YP_002889967.1| electron transport complex, RnfABCDGE type, C subunit [Thauera sp.
           MZ1T]
 gi|237624900|gb|ACR01590.1| electron transport complex, RnfABCDGE type, C subunit [Thauera sp.
           MZ1T]
          Length = 481

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 105/341 (30%), Gaps = 63/341 (18%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
               R  +   V+ +G+ G GGA F   +K     +   D    L++N  E EP    D 
Sbjct: 119 FALTRAEVSARVRDAGIVGLGGAAFPAAVKLDAGNRHPID---TLILNGGECEPYLTCDD 175

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MR     ++EG  + +  +GA    I               A+++     L    +  
Sbjct: 176 RLMREGAGYVVEGVRLIANGLGAKRTVI---------------AIEDNKPEALEAMRAAA 220

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
                I V      Y  G E  L+ ++ G++          A +G+     +V+NV +  
Sbjct: 221 AAHPGIHVLRVPSRYPMGSEKQLVTTVTGREI---PAGKLSAEIGV-----SVHNVGTAL 272

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            V   +R G    S                G +  P  V   +     +LI+   G    
Sbjct: 273 AVCRAVRFGKPLVSRVVTVG---------GGAIRNPRNVVVPIGTPAGDLIDFCGGFTEP 323

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L+     G  +P L                E     GT+ +I +  +         
Sbjct: 324 PTRVLMGGPMMGQVLPGL----------------EAPVVKGTSGIIALTAAEAHAA---- 363

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVME---RLVKGIAQKR 373
                   +C  C  C +     +  +E   R+  G     
Sbjct: 364 -----SERACLHCGRCVDVCPVGLVPLELAARVRAGRIDDA 399


>gi|167751022|ref|ZP_02423149.1| hypothetical protein EUBSIR_02007 [Eubacterium siraeum DSM 15702]
 gi|167655940|gb|EDS00070.1| hypothetical protein EUBSIR_02007 [Eubacterium siraeum DSM 15702]
          Length = 432

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 110/343 (32%), Gaps = 66/343 (19%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+  +  V+ SG  G GGAGF T +K  F PK    +P +L++N  E EP    D     
Sbjct: 114 REQFLQAVRNSGSIGLGGAGFPTSLKLGFDPKEK--QPDFLIINGAECEPYITSDYRCFM 171

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            E   ++EG ++    +G     I +     +  E +    ++                 
Sbjct: 172 EEGEDVLEGVLLMLKYLGIPKCIIGIEKNKPKAIEKMTKLCEK---------------HD 216

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I V     +Y  G E  L+ S  G+  +   +   P   G       V N  + A +  
Sbjct: 217 NITVKPLKSSYPQGAEKTLIFSTTGRVVK---EGTLPLASG-----CIVINSSTAAFIAQ 268

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +R G               +  ++ G+ V  P      + ++  E++       +    
Sbjct: 269 YIRTGMPLVK----------RRITVDGNIVKKPSNFIVPVGMSIGEIVYYAELSDKPDR- 317

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               +I GG  +                            AV++   S            
Sbjct: 318 ----IILGGPMMG----ACAFDPDYPLS--------KTNNAVLMFADSP----------- 350

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
            Y+   C +C  C +     +   E  ++     R+   L ++
Sbjct: 351 VYEPSECIRCGKCVKACSMNLLPTE--LEHAFDMRDARRLEKL 391


>gi|332305735|ref|YP_004433586.1| electron transport complex, RnfABCDGE type, C subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173064|gb|AEE22318.1| electron transport complex, RnfABCDGE type, C subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 862

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 105/329 (31%), Gaps = 63/329 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +     K +  ++  +  +G+ G GGAGF T +K             ++++N  E EP
Sbjct: 131 QPLQDYQSKPKISVLEAICDAGISGMGGAGFPTHIK-----ASPKKDVEFIIINGVECEP 185

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +MR     + +G  + S  +     +I +        E+++ A  +       
Sbjct: 186 YITSDDRLMREHAWQIRQGIDVLSHLLAPKQVYIAIEDNKPEAIEAMRVACQQSEQY--- 242

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                        V   A  Y  G E  L++ +  ++     K   P +VG+      ++
Sbjct: 243 ------------KVIPIATKYPAGGEKQLIQVITNREV---PKQGLPIDVGV-----IMH 282

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEK 268
           NV +   +   +  G               ++ +I+G  V  P  V   +      L+E 
Sbjct: 283 NVGTCYAIADAVFSGKPLIQ----------RVVTITGQAVEKPKNVWALIGTPVAHLLES 332

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
                         +I GG  +                        L +  V V+  +  
Sbjct: 333 AQ--YVAHKQKQKHIIMGGPMMGF---------------------TLASDEVPVVKITNC 369

Query: 329 IIKAIWR-LSVFYKHESCGQCTPCREGTG 356
           ++      ++     + C +C+ C +   
Sbjct: 370 LLLPTSNEIAEPEAEQPCIRCSACADACP 398


>gi|291530144|emb|CBK95729.1| electron transport complex, RnfABCDGE type, C subunit [Eubacterium
           siraeum 70/3]
          Length = 432

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 110/343 (32%), Gaps = 66/343 (19%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+  +  V+ SG  G GGAGF T +K  F PK    +P +L++N  E EP    D     
Sbjct: 114 REQFLQAVRNSGSIGLGGAGFPTSLKLGFDPKEK--QPDFLIINGAECEPYITSDYRCFM 171

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            E   ++EG ++    +G     I +     +  E +    ++                 
Sbjct: 172 EEGEDVLEGVLLMLKYLGIPKCVIGIEKNKPKAIEKMTRLCEK---------------HD 216

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I V     +Y  G E  L+ S  G+  +   +   P   G       V N  + A +  
Sbjct: 217 NITVKPLKSSYPQGAEKTLIFSTTGRVVK---EGTLPLASG-----CIVINSSTAAFIAQ 268

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +R G               +  ++ G+ V  P      + ++  E++       +    
Sbjct: 269 YIRTGMPLVK----------RRITVDGNIVKKPSNFIVPVGMSIGEIVYYAELSDKPDR- 317

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               +I GG  +                            AV++   S            
Sbjct: 318 ----IILGGPMMG----ACAFDPDYPLS--------KTNNAVLMFADSP----------- 350

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
            Y+   C +C  C +     +   E  ++     R+   L ++
Sbjct: 351 VYEPSDCIRCGKCVKACSMNLLPTE--LEHAFDMRDARQLEKL 391


>gi|109899274|ref|YP_662529.1| electron transport complex, RnfABCDGE type, C subunit
           [Pseudoalteromonas atlantica T6c]
 gi|109701555|gb|ABG41475.1| electron transport complex, RnfABCDGE type, C subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 890

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 106/330 (32%), Gaps = 67/330 (20%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            + ++ K+       ++  +  +G+ G GGAGF T +K             ++++N  E 
Sbjct: 135 DYQSLPKV------TVLEAICNAGISGMGGAGFPTHIK-----AAPKKDVEFIIINGVEC 183

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR     + +G  +    +     +I +        E+++ A  +     
Sbjct: 184 EPYITSDDRLMREHAWQIRQGIDVLCHLLSPKQVYIAIEDNKPEAIEAMRVACQQSEQY- 242

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                          V   A  Y  G E  L++ +  ++     K   P +VG+      
Sbjct: 243 --------------KVVPIATKYPAGGEKQLIQVITNREV---PKQGLPIDVGV-----I 280

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           ++NV +   +   +  G               ++ +I+G  V  P  V   +      L+
Sbjct: 281 MHNVGTCFAIADAIFSGKPLIQ----------RVVTITGKAVETPKNVWALIGSPVAHLL 330

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
                G          +I GG  +    A      +   + L             ++  S
Sbjct: 331 --SSAGYVAHRQAQKHIIMGGPMMGFTVASDQVPVVKITNCL-------------LLPTS 375

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            ++       +     + C +C+ C +   
Sbjct: 376 DEM-------AEPEAEQPCIRCSACADACP 398


>gi|329961452|ref|ZP_08299557.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           fluxus YIT 12057]
 gi|328531800|gb|EGF58626.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           fluxus YIT 12057]
          Length = 445

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 120/349 (34%), Gaps = 68/349 (19%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++G    +S+ R   + + K      + I+ ++  +G+ G GGA F T +K    P   +
Sbjct: 100 VEGDEWEESIDRS--ETLVKECNLTSEEIVKKIADAGIVGLGGACFPTQVKLCPPPAFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M      ++ G  I   A+  + AFI +        +
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIQ 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +   V   YA               I V      Y  G E  L++++  ++      P 
Sbjct: 215 LMTK-VASSYAG--------------IEVVPLKVQYPQGGEKQLIDAVISRQVAAGALPI 259

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
                        V NV +   V   ++          +      ++ +++G  +  P  
Sbjct: 260 STG--------AVVQNVGTAFAVYQAVQ----------KNKPLFERVITVTGKSLAKPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG- 312
               +     +LI   CGG+    ++   +I GG  +                 L   G 
Sbjct: 302 FLARIGTPMQQLI-DACGGL---PEDTGKIIGGGPMMG--------------KALVNTGV 343

Query: 313 -SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
            +  G++ +++M+      K   R  +    + C +C  C       + 
Sbjct: 344 PTAKGSSGILIMNN-----KEAKRGEI----QPCIRCAKCVGACPMGLE 383


>gi|167945090|ref|ZP_02532164.1| NADH dehydrogenase (quinone) [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 96

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 52/78 (66%)

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
           +G  +++ V   AG YI GEETA +ES+EG    PR KPPFPA  G++G PT VNN E++
Sbjct: 5   MGKPIELSVMESAGHYIGGEETAAIESVEGNFPFPRGKPPFPAESGVHGYPTLVNNTETL 64

Query: 215 AVVPTILRRGASWYSGFG 232
           A VP I+R GA W+   G
Sbjct: 65  ANVPHIMRHGADWFQALG 82


>gi|291613328|ref|YP_003523485.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291583440|gb|ADE11098.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 492

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 108/334 (32%), Gaps = 61/334 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           ++VD       + I   V  +G+ G GGA F   +K +            L++N  E EP
Sbjct: 113 ESVDDPFALSPENIAARVAVAGIVGLGGATFPAALKLNLSRSSG---VQTLIMNGGECEP 169

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  IMR     ++EG  + + A+ A    + +         ++QAA +        
Sbjct: 170 YLTCDDRIMRERAGQIVEGIRLIAIAVAAKEVLVGIEDNKPEAIAAMQAAAEGSA----- 224

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                      + V      Y  G E  +++ L GK+         PA++G+      V+
Sbjct: 225 -----------VKVVTMPSMYPMGSEKQIIQVLTGKEI---PAGGRPADIGV-----LVH 265

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           NV +   V   +R G    S                G +   C VE  +     ELI+  
Sbjct: 266 NVATAFAVQQAIRYGRPLISRIVT---------VSGGAIKTACNVEALVGTPVQELIDFA 316

Query: 270 CGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
            G           ++ GG                       MG       V V+  ++ +
Sbjct: 317 DG----YVQPAARLVLGGP---------------------MMGQQFTNTEVPVVKGTSGV 351

Query: 330 IKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           +    +     +   C +C+ C       +  +E
Sbjct: 352 LALTAKEIGQAEASPCIRCSTCVRACPVGLLPLE 385


>gi|239623488|ref|ZP_04666519.1| electron transport complex [Clostridiales bacterium 1_7_47_FAA]
 gi|239521519|gb|EEQ61385.1| electron transport complex [Clostridiales bacterium 1_7_47FAA]
          Length = 441

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 105/321 (32%), Gaps = 62/321 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
              ++ I + VK +G+ G GGAGF T +K +   +   +   Y++VN  E EP    D  
Sbjct: 119 TLSKEEIRSIVKEAGIVGLGGAGFPTHVKLTPKDENAIE---YILVNGAECEPYLTSDYR 175

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M  EP  ++ G  +           I +        + L   V +              
Sbjct: 176 MMLEEPEKIVGGLKVILQLFDNAKGVIGIENNKPEAIKILTELVKD-------------- 221

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            +  I V      Y  G E +L+ ++ G+K    +    PA+ G       V+N++++  
Sbjct: 222 -EPRITVCPLLTKYPQGGERSLIYAVTGRKVNSSM---LPADAG-----CIVDNIDTVIA 272

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   + +                K+ +++G  V  P      +   + EL+E   G    
Sbjct: 273 IYMAVCKRTPLMR----------KIITVTGDAVTDPRNFSVKLGTNYQELLEAAGG---- 318

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  +I GG  +    A       +              +A+    +          
Sbjct: 319 FKTEPEKIISGGPMMG--QALFGLDIPVSKTS----------SALTCFTKDQ-------- 358

Query: 336 LSVFYKHESCGQCTPCREGTG 356
                +  +C +C  C     
Sbjct: 359 -VAEMEPSACIRCGKCVSVCP 378


>gi|229518065|ref|ZP_04407509.1| electron transport complex protein RnfC [Vibrio cholerae RC9]
 gi|229344780|gb|EEO09754.1| electron transport complex protein RnfC [Vibrio cholerae RC9]
          Length = 725

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 103/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 157 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 212

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +         +L                 +  
Sbjct: 213 LMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVAAL----------------QQAA 256

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  +++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 257 QDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 308

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 309 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 355

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 356 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 394

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 395 ELTSSDNEMACIRCGQCAEACP 416


>gi|194334122|ref|YP_002015982.1| electron transport complex, RnfABCDGE type subunit C
           [Prosthecochloris aestuarii DSM 271]
 gi|194311940|gb|ACF46335.1| electron transport complex, RnfABCDGE type, C subunit
           [Prosthecochloris aestuarii DSM 271]
          Length = 441

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 107/321 (33%), Gaps = 64/321 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            R+ II ++K +G+ G GGAGF T +K S  P    D    +++N  E EP    D  +M
Sbjct: 120 SREEIIQKIKDAGIVGMGGAGFPTNVKLSPPPDKSID---TIILNGAECEPFLTADHRLM 176

Query: 99  RHEPHTLIEGCVIASFAI-GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
              P  +I G  I +    G   +FI +         + Q A+D           +  G 
Sbjct: 177 VEYPKEVIAGLDIIASLFRGEAKSFIGIES-------NKQDAIDTLKKHA-----AASG- 223

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              I V      Y  G E  L+ ++ G+  +   +   P + G       V N+ +   +
Sbjct: 224 ---IEVVSLKTKYPQGAEKQLINAITGRTIE---EGELPFDKG-----CLVQNIGTAVAI 272

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +                  ++ ++SG  +     +   +  TF +LI          
Sbjct: 273 YEAVC----------MNKPLIERVLTVSGMEIGQRKNIMARVGTTFKDLIAFCDNMSAKT 322

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                 +I GG  +    A       +             T+ ++ ++ +          
Sbjct: 323 N----QIISGGPMMG--KAIFSLDVPV----------VKTTSGILFLNNTA--------- 357

Query: 337 SVFYKHESCGQCTPCREGTGW 357
               K  +C +C  C +    
Sbjct: 358 LEKSKERTCIRCGKCVDVCPQ 378


>gi|146329069|ref|YP_001209463.1| electron transport complex protein, C subunit [Dichelobacter
           nodosus VCS1703A]
 gi|146232539|gb|ABQ13517.1| electron transport complex protein, C subunit [Dichelobacter
           nodosus VCS1703A]
          Length = 535

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 106/351 (30%), Gaps = 57/351 (16%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+ +   V   G+ G GGAGF T  K +   K        LV+NA E EP    D   +R
Sbjct: 133 REQLRARVSDCGVVGLGGAGFPTARKLALAAKH-------LVINAAECEPYISCDDMQIR 185

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                ++ G  ++++ +        +  +  +   +L+ A+ +               D 
Sbjct: 186 EHAAQIVRGAQLSAYILSVDSIRFGIENDKPQAIAALEKAIADA-------------ADP 232

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            I +      Y  G    L E L       R+      + G        +N  ++  V  
Sbjct: 233 RISLTIIPARYPSGNSRQLFELLF----NVRVNGKHAHDRGF-----ICHNTATMKAVYD 283

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            L  G               +  ++SG  +  P      +     ELI +  G       
Sbjct: 284 ALTHG----------RPLLERYVTVSGSEIARPQVYRVRIGTPLTELIAQSGGTTPNSRL 333

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV-IVMDRSTDIIKAIWRLS 337
            +   + G   +       +         L E  +   +  +          +  + +  
Sbjct: 334 LIGGSMMGEPQLN--TEVGLTKTTNCLLLLPETKAEPTSECIRCGRCSDACPMHLLPQQL 391

Query: 338 VFYKHES------------CGQCTPCREGTGWMMRVME--RLVKGIAQKRE 374
            +Y  +             C +C  C       + +++  R+ K   + +E
Sbjct: 392 YWYSRQQNSAALKNYRLFDCIECGICASVCPSRLPLVDYYRVSKDQLRTQE 442


>gi|330884138|gb|EGH18287.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 82

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query: 57  GAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI 116
           GAGF TG+KW  MPK  S    YL+ NADE EP T KDR +M   PH L+EG +I++ A+
Sbjct: 1   GAGFPTGVKWGLMPKDESMNIRYLLCNADEMEPNTWKDRMLMEQLPHLLVEGMLISARAL 60

Query: 117 GAHCAFIYVRGEFIRERESLQA 138
            A+  +I++RGE++   + L  
Sbjct: 61  KAYRGYIFLRGEYVTAAKHLNR 82


>gi|225389877|ref|ZP_03759601.1| hypothetical protein CLOSTASPAR_03626 [Clostridium asparagiforme
           DSM 15981]
 gi|225044070|gb|EEG54316.1| hypothetical protein CLOSTASPAR_03626 [Clostridium asparagiforme
           DSM 15981]
          Length = 441

 Score = 99.7 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 105/313 (33%), Gaps = 59/313 (18%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I + VK +G+ G GGAGF T +K +   +   +   Y++VN  E EP    D  +
Sbjct: 120 LSKQEIRDIVKEAGIVGLGGAGFPTHVKLTPKDENAIE---YILVNGAECEPYLTSDYRM 176

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M  EP  ++ G  +           I +          L   V +               
Sbjct: 177 MIEEPEKIVGGLKVILQLFDNAKGVIGIENNKPEAIAKLTEMVKD--------------- 221

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           +  I V      Y  G E +L+ ++ G+K    +    PA+ G       V+N++++  +
Sbjct: 222 EPRITVCPLKTKYPQGGERSLIYAITGRKVNSSM---LPADAG-----CIVDNIDTVIAI 273

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              + +                K+ +++G  V  P      +   + ELIE   GG +  
Sbjct: 274 YMAVCKRTPLMR----------KIITVTGDAVTDPRNFNVKLGTNYQELIE-AAGGFKTE 322

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            + +L       S   +    +    +         +      V  M+ +  I       
Sbjct: 323 PEKIL-------SGGPMMGQALFDLDIPVSKTSSALTCFTKDQVAAMEPTPCIR------ 369

Query: 337 SVFYKHESCGQCT 349
                   CG+C 
Sbjct: 370 --------CGKCV 374


>gi|332296329|ref|YP_004438252.1| methyl-viologen-reducing hydrogenase delta subunit
           [Thermodesulfobium narugense DSM 14796]
 gi|332179432|gb|AEE15121.1| methyl-viologen-reducing hydrogenase delta subunit
           [Thermodesulfobium narugense DSM 14796]
          Length = 274

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 57/115 (49%)

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+  L    + +G+A  +  D +  +++ +     + +  SCG+C PCR G+  M  
Sbjct: 139 TRIDWATLSRTIAVVGSAGKLFWDENKCMVEMVDFFLDYTQKNSCGECVPCRIGSKRMQE 198

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
           +++++  G   + EI +L E+S+ I   + C LG  A   ++  ++  +  I+  
Sbjct: 199 IVKKISNGSVSEEEISILNELSEVIGASSKCDLGKMAGKAVKFTLQYCKDDIDAH 253


>gi|237734473|ref|ZP_04564954.1| electron transport complex [Mollicutes bacterium D7]
 gi|229382293|gb|EEO32384.1| electron transport complex [Coprobacillus sp. D7]
          Length = 442

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 108/350 (30%), Gaps = 70/350 (20%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           + TN +  Q  S+ +  +   + N           I   +  +G+ G GGAGF + +K  
Sbjct: 98  VITNDHQYQ--SIPEYNTTNDYHNY------SSMQIRELIAHAGIVGLGGAGFPSAIK-- 147

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                  D   Y+++N  E EP    D  +M  E   LI G  I         A I +  
Sbjct: 148 -NTPKDDDSIKYVIINGAECEPYLTSDYRLMLEETDKLIAGIKIQLQLFKNAKAIIAIED 206

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
                   L+  V +               +  I +      Y  G E  L++ L  +  
Sbjct: 207 NKPEALAHLKKVVVD---------------EDKIEIAALPTKYPQGSERVLIKVLTNQTI 251

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
              +    PA+VG       V+NV SI  +          Y           K+ +++G 
Sbjct: 252 ---VNGMLPADVG-----CIVSNVASIIAI----------YEAVALNIPLIEKIVTVTGD 293

Query: 248 -VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            +  P   +  +   +  L+   CGG +        +I GG  +    A       +   
Sbjct: 294 AIFQPQNFKVRLGTKYQTLV-DACGGFKVHP---QKIISGGPMMG--TALFNLDVPVSKT 347

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                      +A++ +                    +C  C  C +   
Sbjct: 348 S----------SALVCLSEDE---------VSKTAPTACIHCGRCVDVCP 378


>gi|167756755|ref|ZP_02428882.1| hypothetical protein CLORAM_02302 [Clostridium ramosum DSM 1402]
 gi|167702930|gb|EDS17509.1| hypothetical protein CLORAM_02302 [Clostridium ramosum DSM 1402]
          Length = 442

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 108/350 (30%), Gaps = 70/350 (20%)

Query: 8   IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
           + TN +  Q  S+ +  +   + N           I   +  +G+ G GGAGF + +K  
Sbjct: 98  VITNDHQYQ--SIPEYNTTNDYHNY------SSMQIRELIAHAGIVGLGGAGFPSAIK-- 147

Query: 68  FMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRG 127
                  D   Y+++N  E EP    D  +M  E   LI G  I         A I +  
Sbjct: 148 -NTPKDDDSIKYVIINGAECEPYLTSDYRLMLEETDKLIAGIKIQLQLFKNAKAIIAIED 206

Query: 128 EFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKG 187
                   L+  V +               +  I +      Y  G E  L++ L  +  
Sbjct: 207 NKPEALAHLKKVVVD---------------EDKIEIAALPTKYPQGSERVLIKVLTNQTI 251

Query: 188 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH 247
              +    PA+VG       V+NV SI  +          Y           K+ +++G 
Sbjct: 252 ---VDGMLPADVG-----CIVSNVASIIAI----------YEAVALNIPLIEKIVTVTGD 293

Query: 248 -VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYD 306
            +  P   +  +   +  L+   CGG +        +I GG  +    A       +   
Sbjct: 294 AIFQPQNFKVRLGTKYQTLV-DACGGFKIHP---QKIISGGPMMG--TALFNLDVPVSKT 347

Query: 307 GLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                      +A++ +                    +C  C  C +   
Sbjct: 348 S----------SALVCLSEDE---------VSKTAPTACIHCGRCVDVCP 378


>gi|146281701|ref|YP_001171854.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas
           stutzeri A1501]
 gi|25136601|emb|CAC03726.2| rnfC protein [Pseudomonas stutzeri]
 gi|145569906|gb|ABP79012.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas
           stutzeri A1501]
          Length = 487

 Score = 99.7 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 99/339 (29%), Gaps = 60/339 (17%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
             +    +   V  +G+ G GGA F   +K     +        ++VN  E EP    D 
Sbjct: 120 FAEDPQRLAQRVADAGVVGLGGAIFPAAVKLK---QGARHEIKTVLVNGSECEPYLSCDD 176

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MR     +++G  +    + A+   I               A+++   + L    +  
Sbjct: 177 RLMRERAEAVVDGARLIQHILRAYSIVI---------------AIEDNKPAALAAMRAAS 221

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
                I V      Y  G    L+  + G++           +VG+      V+N  ++ 
Sbjct: 222 EPYGAIEVVAVPALYPMGSAKQLIRQVTGREV---PAGGRSTDVGV-----LVHNAGTVY 273

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +   LR G    S                G V+ P  +E  +      L E   G +R 
Sbjct: 274 AIQQALRHGRPLISRVVT---------VAGGCVSNPRNIETLIGTPVQALFESCGGLLRE 324

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  ++ GG  +  L                 +    G   ++ +D           
Sbjct: 325 P----QQLLLGGPMMGMLLPST------------AVPVIKGATGLLALDHGEVPRS---- 364

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
                    C +C  C +     +  +E   +      +
Sbjct: 365 -----DSAPCIRCARCVDACPMGLAPLEMAARTRVDDFD 398


>gi|153215071|ref|ZP_01949788.1| RnfC-related protein [Vibrio cholerae 1587]
 gi|124114934|gb|EAY33754.1| RnfC-related protein [Vibrio cholerae 1587]
          Length = 505

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 116/356 (32%), Gaps = 72/356 (20%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E 
Sbjct: 127 DYQQL------SPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAEC 176

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR   H +I+G  I    +      I +         +L           
Sbjct: 177 EPYITADDVLMRQYAHEIIQGVEIVEHILKPKLTIIGIEDNKPEAVAAL----------- 225

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                 +   D  +++      Y  G E  L++ L   +     K   PA++GL      
Sbjct: 226 -----QQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----M 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV S+  +   +  G               ++ +++G     P  V   +      L+
Sbjct: 273 VQNVGSLQAIARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +           L  +I GG  +                        L  A V +   +
Sbjct: 323 NEFGY---KADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTA 358

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
             I+           +E +C +C  C E     + ++ + ++  A+  + D   E+
Sbjct: 359 NCILAPTRNELTSSDNEMACIRCGQCAEACP--VSLLPQQLQWHAKAEDFDKCEEL 412


>gi|301156225|emb|CBW15696.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Haemophilus parainfluenzae T3T1]
          Length = 776

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 114/389 (29%), Gaps = 82/389 (21%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +++   +  + +I  +  +G+ G GGA F T  K     +    +   L++N  E EP  
Sbjct: 125 LEEFFTQPVEQLIERIYQAGVAGLGGAVFPTAAK----IQSAEKKVKLLIINGAECEPYI 180

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +MR     +IEG  I  + +      I V        +++Q ++           
Sbjct: 181 TCDDRLMRDYTDEMIEGIRILRYILRPEKVVIAVEDNKPEAIQAIQQSLHGAN------- 233

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                   DI +      Y  G    L+  L G +           ++G+      ++NV
Sbjct: 234 --------DIELRVIPTKYPSGAAKQLIYLLTGMEV---PSGGRSYDIGV-----LMHNV 277

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +   V   +                  ++ +++G  ++        +    D ++ +  
Sbjct: 278 GTAFAVKRAVINDEPLI----------ERIVTLTGDKISEKGNYWVRLGTPVDHILAQVG 327

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
                 +D    V  GG  +    +          + L                      
Sbjct: 328 ----YQYDERFPVFAGGPMMGLQLSDLNAPVTKLINCLLAPDHF---------------- 367

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTG--WMMRVM---ERLVKGIAQKREIDLLYEVSKNI 385
                       +SC +C+ C +      M + +    R       +      Y +   I
Sbjct: 368 ----EYGEPEPEQSCIRCSACSDACPVNLMPQQLYWYARSEDHQKSEE-----YCLKDCI 418

Query: 386 EGRTICALGDAAAWPIQG---LIKNFRPL 411
           E    C      A+       LI+ FR  
Sbjct: 419 E----CG---VCAYVCPSHIPLIQYFRQE 440


>gi|317479125|ref|ZP_07938265.1| electron transport complex [Bacteroides sp. 4_1_36]
 gi|316904697|gb|EFV26511.1| electron transport complex [Bacteroides sp. 4_1_36]
          Length = 445

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 119/347 (34%), Gaps = 64/347 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++G    +S+ R   + + K      + I+ ++  +G+ G GGA F T +K    P   +
Sbjct: 100 VEGDEWEESIDRS--ETLVKECSLTSEEIVKKIADAGIVGLGGACFPTQVKLCPPPAFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M      ++ G  I   A+  + AFI +        +
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEHAEEIMVGVSILMKAVKVNKAFIGIENNKPDAIQ 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +   V   YA               I V      Y  G E  L++++  ++      P 
Sbjct: 215 LMTK-VASSYAG--------------IEVVPLKVQYPQGGEKQLIDAVISRQVAAGALPI 259

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
                        V N  +   V   ++          +      ++ +++G  +  P  
Sbjct: 260 STG--------AVVQNAGTAFAVYQAVQ----------KNKPLFERVITVTGKSLAKPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +     +LIE  CGG+    ++   +I GG  +    A                 +
Sbjct: 302 FLARIGTPMKQLIE-ACGGL---PEDTGKIIGGGPMMG--KALVNTDVP----------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             G++ +++M+      K   R  V    + C +C  C       + 
Sbjct: 346 AKGSSGILIMNE-----KEAKRGEV----QPCIRCAKCVGACPMGLE 383


>gi|327479948|gb|AEA83258.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 487

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 99/339 (29%), Gaps = 60/339 (17%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
             +    +   V  +G+ G GGA F   +K     +        ++VN  E EP    D 
Sbjct: 120 FAEDPQRLAQRVADAGVVGLGGAIFPAAVKLK---QGARHEIKTVLVNGSECEPYLSCDD 176

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MR     +++G  +    + A+   I               A+++   + L    +  
Sbjct: 177 RLMRERAEAVVDGARLIQHILRAYSIVI---------------AIEDNKPAALAAMRAAS 221

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
                I V      Y  G    L+  + G++           +VG+      V+N  ++ 
Sbjct: 222 EPYGAIEVVAVPALYPMGSAKQLIRQVTGREV---PAGGRSTDVGV-----LVHNAGTVY 273

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +   LR G    S                G V+ P  +E  +      L E   G +R 
Sbjct: 274 AIQQALRHGRPLISRVVT---------VAGGCVSNPRNIETLIGTPVQALFESCGGLLRE 324

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  ++ GG  +  L                 +    G   ++ +D           
Sbjct: 325 P----QQLLLGGPMMGMLLPST------------AVPVIKGATGLLALDHGEVPRS---- 364

Query: 336 LSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
                    C +C  C +     +  +E   +      +
Sbjct: 365 -----DSAPCIRCARCVDACPMGLAPLEMAARTRVDDFD 398


>gi|291556930|emb|CBL34047.1| electron transport complex, RnfABCDGE type, C subunit [Eubacterium
           siraeum V10Sc8a]
          Length = 432

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 110/343 (32%), Gaps = 66/343 (19%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+  +  V+ SG  G GGAGF T +K  F PK    +P +L++N  E EP    D     
Sbjct: 114 REQFLQAVRNSGSIGLGGAGFPTSLKLGFDPKEK--QPDFLIINGAECEPYITSDYRCFM 171

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
            E   ++EG ++    +G     I +     +  E +    ++                 
Sbjct: 172 EEGEDVLEGVLLMLKYLGIPKCIIGIEKNKPKAIEKMTRLCEK---------------HD 216

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           +I V     +Y  G E  L+ S  G+  +   +   P   G       V N  + A +  
Sbjct: 217 NITVKALKSSYPQGAEKTLIFSTTGRVVK---EGTLPLASG-----CIVVNSSTAAFIAQ 268

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +R G               +  ++ G+ V  P      + ++  E++       +    
Sbjct: 269 YIRTGMPLVK----------RRITVDGNIVKKPSNFIVPVGMSIGEIVYYAELSDKPDR- 317

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               +I GG  +                            AV++   S            
Sbjct: 318 ----IILGGPMMG----ACAFDPDYPLS--------KTNNAVLMFADSP----------- 350

Query: 339 FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
            Y+   C +C  C +     +   E  ++     R+   L ++
Sbjct: 351 VYEPSECIRCGKCVKACSMNLLPTE--LEHAFDMRDARRLEKL 391


>gi|154497075|ref|ZP_02035771.1| hypothetical protein BACCAP_01368 [Bacteroides capillosus ATCC
           29799]
 gi|150273474|gb|EDN00602.1| hypothetical protein BACCAP_01368 [Bacteroides capillosus ATCC
           29799]
          Length = 454

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 107/354 (30%), Gaps = 72/354 (20%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           WD ++         +++ V+ SGL G GGAGF T +K +            LV+N  E E
Sbjct: 129 WDGIEVPKVTNMQELLDAVRKSGLVGLGGAGFPTWVKLNATVDR-------LVINGSECE 181

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   MR     + EG  I    +G   A + V+                      
Sbjct: 182 PYCTVDYIAMRDYAADMAEGVRIVKTLLGIEKAIVGVK-------------------HPP 222

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
            G          + +      Y  G E  L+    G +  P  K   P + G       V
Sbjct: 223 KGLEDAFKGMDGVEIKQLREYYPVGAEKMLIHETTG-RVVPGGK--LPKDAG-----CIV 274

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIE 267
            NV + A +   LR G    S          K  S+ G  VN P  +   +     +L  
Sbjct: 275 LNVNTAAFIARYLRTGMPLVS----------KTVSVDGSAVNTPSVITAPIGTPVGDLFA 324

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              G               G ++P L    +                      + +++  
Sbjct: 325 AAGGFKGEPAKIFAGGPMMGIALPDLDFPLLWN----------------NNGFVALNQKD 368

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
               A           +C +C  C +     +   E  +    ++R+++ L  +
Sbjct: 369 AAKPAT---------TACIRCGRCVDHCPMNLMAFE--ISKAYEQRDVEWLRSI 411


>gi|307721746|ref|YP_003892886.1| Glutamate synthase (NADPH) [Sulfurimonas autotrophica DSM 16294]
 gi|306979839|gb|ADN09874.1| Glutamate synthase (NADPH) [Sulfurimonas autotrophica DSM 16294]
          Length = 678

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGW 357
                YD  ++  + +G   V + +   D+I+     +  Y+   E+CG+C P R G   
Sbjct: 30  NLPAQYDDHRDSKAFIGWDGVSLFNEDVDVIRLAMEYAAQYQVYSEACGRCAPGRWGGRI 89

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +   ++++ +G  +  ++D L E+ K+++  + C +G     PI  L+ +F     E I+
Sbjct: 90  LYDQLDKIARGEGEIADLDHLKEIGKSMQITSKCEIGKTVPNPILDLMTHFEETFLECIN 149

Query: 418 QYHR 421
           +  +
Sbjct: 150 EKKK 153


>gi|304438803|ref|ZP_07398730.1| Na(+)-translocating NADH-quinone reductase subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372726|gb|EFM26305.1| Na(+)-translocating NADH-quinone reductase subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 443

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 105/315 (33%), Gaps = 58/315 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           EK  D +I  VK  G+ G GGAGF    K     K  +      V+N  E EP    D  
Sbjct: 121 EKSLDDMIPFVKEKGIVGMGGAGFPLHAK----IKNENPVLDECVINGAECEPFLTCDHR 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           IM  +   +++G  I +       +++ +        E ++  +    A           
Sbjct: 177 IMLEKTDEILKGLEIFANYYNKDVSYMAIEENKPDAIEKMEERIKSNPAWS--------- 227

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I V      Y  G+   L E++ G +  P+        VG++     + NV +   
Sbjct: 228 ---HIKVVGCKTKYPQGDSKRLSEAVVG-RIVPQNGVTNT--VGVF-----LTNVGTTLA 276

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
               +  G   Y      +  G         +N P  +   +  +  +++   CGG++  
Sbjct: 277 FYEAVIEGKPSYERVITVSGSG---------INKPKNILVKIGTSVRDIL-DFCGGVK-- 324

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            DN + ++ GG       +     + +             T+ ++V              
Sbjct: 325 -DNTVEIVCGGPMTG--KSVFDLDSPITKT----------TSGILVFTDED--------- 362

Query: 337 SVFYKHESCGQCTPC 351
              Y+   C +C+ C
Sbjct: 363 IDTYEESPCIRCSRC 377


>gi|312880739|ref|ZP_07740539.1| electron transport complex, RnfABCDGE type, C subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310784030|gb|EFQ24428.1| electron transport complex, RnfABCDGE type, C subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 443

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 101/322 (31%), Gaps = 63/322 (19%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
                I   V+ +G+ G GGA F T +K S  P        +++VN  E EP    D  +
Sbjct: 120 LDPGEIRRIVREAGIVGMGGACFPTAVKLSPPPDK---VIRHVIVNGAECEPYLTCDDRL 176

Query: 98  MRHEPHTLIEGCVIASFAI-GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           M  E   ++EG  I      G     I V        E+L   V                
Sbjct: 177 MVEEADHILEGLRIVLSLFPGGVKGHIAVEDNKPEAIETLGRVVTGQA------------ 224

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I V      Y  G E  ++ +L G++         PA+VG       + NV ++  
Sbjct: 225 ---HIEVFPVRTKYPQGAEKMMIYALTGQEV---PCGGLPADVG-----CLMLNVRTVHQ 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +          ++          ++ ++SG+ +  P  +   +  +  +L++   G    
Sbjct: 274 I----------WNAVVLGRPVTDRIVTVSGNAIREPKNLHVRLGTSVLDLVDGAGG---- 319

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  V+ GG  +    A       +            GT+ ++       +      
Sbjct: 320 FRAEPAKVLAGGPLMGV--ALSTLDVPV----------VKGTSGLLAFTEGAAMTP---- 363

Query: 336 LSVFYKHESCGQCTPCREGTGW 357
                   +C +C  C E    
Sbjct: 364 -----PESACIRCGKCVEVCPM 380


>gi|167945091|ref|ZP_02532165.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 114

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           M    ++LI +H GG+  G + L AV  GG S   L    +    +D++ +    S LGT
Sbjct: 1   MGTPLEQLIFEHGGGMLVGKE-LKAVFTGGPSNTILTPKDL-DVPLDFESVAARRSALGT 58

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
            A+IV+   T I+K +     F+   SCGQC PC+ GT ++  ++ ++  G   + 
Sbjct: 59  GAMIVVSEGTGIVKRVTEYVNFFADSSCGQCPPCKTGTYYISLLLSKIDTGQGSQA 114


>gi|300856191|ref|YP_003781175.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
 gi|300436306|gb|ADK16073.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
          Length = 926

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 56/108 (51%), Gaps = 1/108 (0%)

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREI 375
           G+  + ++  +  I++   +     + +SCG+CT CREG   +  + + ++KG ++K ++
Sbjct: 205 GSGVIHIIYENDCIVEKTKKELENLRKQSCGKCTFCREGLYQLDVIFDDMIKGRSEKEDL 264

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            ++ E++  ++    C+LG  +  P    I  F+  +E+ I +   C 
Sbjct: 265 AMVEELTSAMKFSCNCSLGKCSGEPAASAITEFKLEVEQHIKKRG-CP 311


>gi|189500466|ref|YP_001959936.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           phaeobacteroides BS1]
 gi|189495907|gb|ACE04455.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           phaeobacteroides BS1]
          Length = 441

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 112/332 (33%), Gaps = 70/332 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            W    K      + II ++K +G+ G GGAGF T +K +  P    D    +++N  E 
Sbjct: 115 DWHGFSK------EDIIGKIKNAGIVGMGGAGFPTNVKLAPPPDKKID---TIILNGAEC 165

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC-AFIYVRGEFIRERESLQAAVDECYAS 146
           EP    D  +M   P  ++EG  I +   G    A+I +        E+L +      + 
Sbjct: 166 EPFLTADHRLMLESPEEIVEGLNIITSLFGGEARAYIGIESNKKDAIETLTS---HASSK 222

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           G             I V      Y  G E  L+ ++ G+  +P   P        +    
Sbjct: 223 G-------------IEVVSLKTKYPQGAEKQLINAITGRTIEPGELP--------FDKGC 261

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDEL 265
            V N+ +   V   +           +      ++ ++SG  +  P  +   +  +F + 
Sbjct: 262 LVQNIATAVAVYEAVC----------KNKPLVDRVVTVSGLEIGKPKNIRALVGTSFRD- 310

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           I   CG ++   +    +I GG  +    A       +             T+ ++ ++ 
Sbjct: 311 ISLFCGNLKESTNQ---IISGGPMMG--KAVYTLDVPI----------IKTTSGMLFINN 355

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                          +  +C +C  C +    
Sbjct: 356 VG---------IEKARERTCIRCGKCVDVCPQ 378


>gi|261211947|ref|ZP_05926233.1| electron transport complex protein RnfC [Vibrio sp. RC341]
 gi|260838555|gb|EEX65206.1| electron transport complex protein RnfC [Vibrio sp. RC341]
          Length = 825

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 102/331 (30%), Gaps = 70/331 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E 
Sbjct: 127 DYQQL------SPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAEC 176

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR     +I+G  I    +      I +                      
Sbjct: 177 EPYITADDVLMRQYAQEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA------------- 223

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
              +  +   D  +++      Y  G E  L++ L   +     K   PA++GL      
Sbjct: 224 ---ALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----M 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV S+  +   +  G               ++ +++G     P  V   +      L+
Sbjct: 273 VQNVGSLQAIARAILHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +    +      L   I GG  +                        L  A V +   +
Sbjct: 323 NEFGYKVDKKLPRL---IMGGPMMGF---------------------TLPHAQVPITKTA 358

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
             I+           HE +C +C  C +   
Sbjct: 359 NCILAPTRNELTNSDHEMACIRCGQCADACP 389


>gi|260913865|ref|ZP_05920339.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
 gi|260631952|gb|EEX50129.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
          Length = 753

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/382 (15%), Positives = 120/382 (31%), Gaps = 76/382 (19%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L +  + +++++  +G+ G GGA F T  K          +   L++N  E EP    D 
Sbjct: 128 LTQTPEQLVDKIYKAGVAGLGGAAFPTAAK----IHSADKQVKLLIINGAECEPYITCDD 183

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MR  P  +IEG  I  + +      I V        E+LQ A+               
Sbjct: 184 RLMRDYPEDIIEGIRILRYILRPEKVVIAVEDNKPEAVEALQKALQGAN----------- 232

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               DI +      Y  G    L+  L G +          +++G+      + NV +  
Sbjct: 233 ----DIEIRVIPTKYPSGAAKQLIHILTGMEV---PSGQRSSSIGV-----LMQNVGTAF 280

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            +   +                  ++ +++G  V         +     +L++++     
Sbjct: 281 AIKRAVMNDEPLI----------ERVVTLTGDKVANKGNQWVRIGTPIYQLLQQYG---- 326

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
             +D+   V  GG  +  +            + L                          
Sbjct: 327 YQYDSRFPVFMGGPLMGFILPDLQAPVTKITNCLLAPDHF-------------------- 366

Query: 335 RLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
             +     +SC +C+ C +      M + +    +    ++  +  Y +   IE    C 
Sbjct: 367 EYAPPAPEQSCIRCSACSDACPVNLMPQQLYWFARSEDHEKSEE--YALHDCIE----CG 420

Query: 393 LGDAAAWPIQG---LIKNFRPL 411
           L    A+       LI+ FR  
Sbjct: 421 LC---AYVCPSHIPLIQYFRQE 439


>gi|289434387|ref|YP_003464259.1| propanediol utilization protein PduS [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170631|emb|CBH27171.1| propanediol utilization protein PduS [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 451

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 104/301 (34%), Gaps = 52/301 (17%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K+S           YL++NA E EP    D  +MR+     I+   +    +GA 
Sbjct: 20  FPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A +  +  +  E  +L+AA+ E               D  + +H     Y  G+E  ++
Sbjct: 73  FAVVATKRYYTEEIAALRAAIQEL--------------DSSVTIHEMDNVYPTGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P  VG       V+NV ++  V   +   A              
Sbjct: 119 FEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIDDDAPVIR---------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P  ++  +   F+  +    G                S    L  G M 
Sbjct: 161 KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGG-------------TNLSEYLFLDGGPMM 207

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
           G + +   L E      T+ +IV + +  + K  ++      +E+   C  C   T    
Sbjct: 208 GKLNNQSSLAEKVVTKTTSGLIVTEDTGYLHKLHYQTVEQIFNETKSACIQCTLCTDLCP 267

Query: 360 R 360
           R
Sbjct: 268 R 268


>gi|152979395|ref|YP_001345024.1| electron transport complex protein RnfC [Actinobacillus
           succinogenes 130Z]
 gi|171704327|sp|A6VQ42|RNFC_ACTSZ RecName: Full=Electron transport complex protein rnfC
 gi|150841118|gb|ABR75089.1| electron transport complex, RnfABCDGE type, C subunit
           [Actinobacillus succinogenes 130Z]
          Length = 703

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 117/386 (30%), Gaps = 76/386 (19%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
            +       + +I ++  +G+ G GGA F TG K          +   L++N  E EP  
Sbjct: 125 TEDYFTHTPERLIEKIYRAGVAGLGGAVFPTGAKVDAAL----GKVKLLIINGAECEPYI 180

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +MR     +IEG  I  + +      I +         +L+ ++           
Sbjct: 181 TCDDRLMRDYAAEIIEGVRILRYILRPEKVVIAIEDNKPEAVNALRTSLQGA-------- 232

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                 D+DI V      Y  G    L+  L G +          +++G+      + NV
Sbjct: 233 -----NDMDIRV--IPTKYPSGAAKQLIYVLTGMEV---PHGQRSSSIGV-----LMQNV 277

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +   V   +                  ++ +++G  + +       +     + I KH 
Sbjct: 278 GTAFAVKRAVINDEPLI----------ERVVTLTGDKIPHKGNQWVRLGTPI-DFILKHV 326

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           G      DN   V  GG  +  +            + L                      
Sbjct: 327 G---YQPDNRFPVFVGGPMMGLIVPDLRAPITKTANCLLAPDHF---------------- 367

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
                       ++C +C+ C +      M + M    +    ++     Y++   IE  
Sbjct: 368 ----EYDPQATEQACIRCSACSDACPVHLMPQQMYWYARAEDHEKSNQ--YQLMDCIE-- 419

Query: 389 TICALGDAAAWPIQG---LIKNFRPL 411
             C L    A+       LI+ FR  
Sbjct: 420 --CGLC---AYVCPSHIPLIQYFRQE 440


>gi|153840325|ref|ZP_01992992.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AQ3810]
 gi|149746012|gb|EDM57142.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AQ3810]
          Length = 280

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 88/235 (37%), Gaps = 39/235 (16%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++  D +I+ ++ +G+ G GGAGF T  K     +    R   L+VNA E EP    D  
Sbjct: 75  QESADALIDIIRLAGISGMGGAGFPTAKK----IQSGIARTEILIVNAAECEPYITADDK 130

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     LI+G  I    +      I +        ++L++A                 
Sbjct: 131 LMQEHAEELIQGIEIVEHILKPKLTIIGIEDNKPDAIKALESA----------------A 174

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            + DI++      Y  G E  L++ L  K+         PA++G+      V NV S+  
Sbjct: 175 LNKDIVIRVIPTKYPSGGEKQLIKILTNKEV---PSGSIPADIGI-----LVQNVGSLYS 226

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
           +   +  G               ++ +++G     P  V   +      L+++  
Sbjct: 227 IKRAIIDGEPMI----------ERVVTLTGKTFKQPRNVWALLGTPVQALLDEFG 271


>gi|254491903|ref|ZP_05105082.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Methylophaga thiooxidans DMS010]
 gi|224463381|gb|EEF79651.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Methylophaga thiooxydans DMS010]
          Length = 508

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 36/263 (13%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             V    +     I   ++ +G+ G GGAGF + +K   +          L++N  E EP
Sbjct: 115 QPVKNFRDMSAHEIRQIIRDAGIVGLGGAGFPSFIK---LNPGVHHDVETLLLNGAECEP 171

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  ++R     +++G  I   A+ A    + +         +++ A+         
Sbjct: 172 YITCDDMLLRERAEGILDGVEIMQHALRARNVILAIEDNKPEGVSAMELALAARPQLQ-- 229

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     +  +      Y  G E  L++ + GK+         P ++G+       +
Sbjct: 230 ----------NTSIMVIPTRYPTGGEKQLIQVVTGKQVPSNG---LPIDIGI-----VSH 271

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKH 269
           N+ +   V   +  G    S        GT        V +    E        EL+   
Sbjct: 272 NMGTAYAVGRAINHGEPLISRIVT--VTGT-------DVTHAGNFETLFGTPISELL--A 320

Query: 270 CGGIRGGWDNLLAVIPGGSSVPC 292
               +   D     I GG  +  
Sbjct: 321 FAETKRQPDEP--FILGGPMMGF 341


>gi|315925372|ref|ZP_07921583.1| propanediol utilization protein PduS [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621273|gb|EFV01243.1| propanediol utilization protein PduS [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 456

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 122/321 (38%), Gaps = 53/321 (16%)

Query: 42  WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
            ++ +VK +G+ G GGAGF T +K     +       Y +VNA E EP    D+   R +
Sbjct: 2   DLLEKVKQAGVIGAGGAGFPTHVKLGASAE-------YFIVNALECEPLIAVDKYCCREQ 54

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
              ++ G ++A+ A+ A    I ++  + RE ESLQAA++   A               I
Sbjct: 55  SEQIVAGTLLAAAAVNAQHIVIALKKTYRREIESLQAAINAAGA--------------SI 100

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +   A  Y  G+E  +++++ GK    R     P+ VG       V+NV ++  +    
Sbjct: 101 ELFKMAPFYPAGDEQIVVQAVTGKSIPERG---LPSAVG-----AVVDNVGTVCGIAQAA 152

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             GA              K  S+ G V  P  +   +     + +    G  +G      
Sbjct: 153 A-GAPVTQ----------KTLSVIGAVPKPLILTVPIGTPVTDCLALAGGMPKG-----A 196

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVI GG          M   I   D L E         ++V+ ++  +           K
Sbjct: 197 AVILGGP--------MMGRMIWQEDALAEEVVSKTLGNLLVLPKNHFLAAHRQLSIRQMK 248

Query: 342 HESCGQCTPCREGTGWMMRVM 362
            ++   C  CR  T    R +
Sbjct: 249 RQAMAACIQCRMCTDLCPRQL 269


>gi|153939908|ref|YP_001392933.1| respiratory-chain NADH dehydrogenase family protein [Clostridium
           botulinum F str. Langeland]
 gi|152935804|gb|ABS41302.1| respiratory-chain NADH dehydrogenase family protein [Clostridium
           botulinum F str. Langeland]
 gi|295320911|gb|ADG01289.1| respiratory-chain NADH dehydrogenase family protein [Clostridium
           botulinum F str. 230613]
          Length = 428

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 99/260 (38%), Gaps = 47/260 (18%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L +  + I++ ++A+G+ G GGAGF T +K        +     ++ NA E EP    + 
Sbjct: 73  LLESSNNILDLIQAAGIVGMGGAGFPTHIK-----MDVNLNGGVVIANAVECEPLLAHNI 127

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
           + + +EP  + +G   A  A+ A      ++ + +    SL+  +               
Sbjct: 128 NQIINEPELIYKGLCYAMEAVNASKGVFAIKSKNVEAISSLKNVIK-------------- 173

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
             D ++ +      Y  GEE A++  + GK   P  + P  AN         V+NVE++A
Sbjct: 174 --DSNVKIVELPYMYPMGEERAIIREVLGKLLDP-SQLPLEANA-------VVSNVETLA 223

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY----PCTVEESMSITFDELIEKHCG 271
            +   +            +    +K  ++ G +         +   +  T  ELIE   G
Sbjct: 224 KIAEAVE----------LKKPVISKNITVVGKLKNGLESQVFINVPIGTTVKELIEAAGG 273

Query: 272 GIRGGWDNLLAVIPGGSSVP 291
                 +    +I GG    
Sbjct: 274 IDGEYGE----IIIGGPFTG 289


>gi|242277958|ref|YP_002990087.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfovibrio salexigens DSM 2638]
 gi|242120852|gb|ACS78548.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfovibrio salexigens DSM 2638]
          Length = 441

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 96/287 (33%), Gaps = 59/287 (20%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             ++VN    EP    D  +M  E  T+I G        GA    I ++G+  +  +++Q
Sbjct: 33  DTVLVNGASCEPLLMSDPYLMEAEVDTMIRGLEAIMDCTGAKKGIICLKGKHAKAVKAVQ 92

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            AV               G    +        Y  G+E  L+  + G+    R     P 
Sbjct: 93  EAVA----------RDGSG---RLECFVLKDFYPAGDEQVLVYEVLGRTVPERG---IPL 136

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VG       V+N ES+  V   +                  +  +++G +  P  V+  
Sbjct: 137 QVG-----AVVSNTESLFNVALAMD-----------GKPVTHRYLTVAGEIKNPMVVKVP 180

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +     +++E   G     +     V+ GG  +  +     +                 T
Sbjct: 181 VGTLVSDVLEFAGGPTISDYK----VVDGGPMMGRVLPDTNQPVT------------KTT 224

Query: 318 AAVIVMDRSTDII-------KAIWRLSVFYKHESCGQCTPCREGTGW 357
           + ++V+  + +++       + I R++    +  C QC+ C +    
Sbjct: 225 SGLLVLPPNHNVVAGKVMDPEKIRRIT----NTVCCQCSRCTDLCPR 267


>gi|16765383|ref|NP_460998.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990962|ref|ZP_02572061.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168242119|ref|ZP_02667051.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194447410|ref|YP_002046101.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197261904|ref|ZP_03161978.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|5069461|gb|AAD39017.1| PduS [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420583|gb|AAL20957.1| propanediol utilization protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194405714|gb|ACF65933.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197240159|gb|EDY22779.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205330467|gb|EDZ17231.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205338363|gb|EDZ25127.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|261247267|emb|CBG25091.1| propanediol utilization ferredoxin [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994102|gb|ACY88987.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158614|emb|CBW18125.1| propanediol utilization ferredoxin [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913044|dbj|BAJ37018.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321224698|gb|EFX49761.1| Cob(III)alamin reductase @ Cob(II)alamin reductase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323130376|gb|ADX17806.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332988988|gb|AEF07971.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 451

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+      G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPLLPDG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQRFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|56478214|ref|YP_159803.1| electron transport complex protein RnfC [Aromatoleum aromaticum
           EbN1]
 gi|56314257|emb|CAI08902.1| putative electron transport complex protein [Aromatoleum aromaticum
           EbN1]
          Length = 547

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 42/257 (16%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
           R+  +  +   G+ G GGAGF T +K              L++N  E EP    D  +MR
Sbjct: 124 REAALRYLSTCGIVGMGGAGFPTHIKLG-----NGRGIETLIINGAECEPWITCDDRLMR 178

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                ++ G  I    IGA    + +         +++ A  +              +  
Sbjct: 179 ERAAEILSGAAILHELIGARRTLVGIEDNKPEAIRAMRQAAAD--------------FPG 224

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
            + +      Y  G E  L+  L G +             G+        NV +   V  
Sbjct: 225 PVEIVAIPTRYPAGGEKQLIRVLTGIEI---AHGKLGTEFGV-----QCFNVGTAHAVHR 276

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
            +  G    S          ++ +++G+V++P   E  +    + L+      +     +
Sbjct: 277 AIHHGEPLVS----------RVVTLTGNVSHPGNYEVLVGTPVETLL-----ALATPKPD 321

Query: 280 LLAVIPGGSSVPCLPAG 296
               + GG  +    A 
Sbjct: 322 TDRYLMGGPMMGITIAD 338


>gi|325578317|ref|ZP_08148452.1| electron transport complex protein RnfC [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160053|gb|EGC72182.1| electron transport complex protein RnfC [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 778

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 114/389 (29%), Gaps = 82/389 (21%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +++   +  + +I  +  +G+ G GGA F T  K     +    +   L++N  E EP  
Sbjct: 125 LEEFFTQPVEQLIERIYQAGVAGLGGAVFPTAAK----IQSAEKKVKLLIINGAECEPYI 180

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +MR     +IEG  I  + +      I V        +++Q ++           
Sbjct: 181 TCDDRLMRDYTDEMIEGIRILRYILRPEKVVIAVEDNKPEAIQAIQQSLHGAN------- 233

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                   DI +      Y  G    L+  L G +           ++G+      ++NV
Sbjct: 234 --------DIELRVIPTKYPSGAAKQLIYLLTGMEV---PSGGRSYDIGV-----LMHNV 277

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHC 270
            +   +   +                  ++ +++G  ++        +    D L+ +  
Sbjct: 278 GTAFAIKRAVINDEPLI----------ERVVTLTGDKISEKGNYWVRLGTPVDHLLAQVG 327

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
                 +D    V  GG  +    +          + L                      
Sbjct: 328 ----YKYDERFPVFAGGPMMGLQLSDLNAPVTKLINCLLAPDHF---------------- 367

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTG--WMMRVM---ERLVKGIAQKREIDLLYEVSKNI 385
                       +SC +C+ C +      M + +    R       +      Y +   I
Sbjct: 368 ----EYGEPEPEQSCIRCSACSDACPVNLMPQQLYWYARSEDHQKSEE-----YCLKDCI 418

Query: 386 EGRTICALGDAAAWPIQG---LIKNFRPL 411
           E    C      A+       LI+ FR  
Sbjct: 419 E----CG---VCAYVCPSHIPLIQYFRQE 440


>gi|319902322|ref|YP_004162050.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417353|gb|ADV44464.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           helcogenes P 36-108]
          Length = 445

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 120/347 (34%), Gaps = 64/347 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++G    +S+ R   + + K      + I+ ++  +G+ G GGA F T +K    P   +
Sbjct: 100 VEGDEWEESIDRS--ETLVKECNLTSEEIVKKIADAGIVGLGGACFPTQVKLCPPPAFKA 157

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +    +++NA E EP    D  +M      ++ G  I   A+  + AFI +        +
Sbjct: 158 EC---VIINAVECEPYLTADHQLMLEHADEVMVGVSILMKAVKVNKAFIGIENNKPDAIQ 214

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
            +   V   YA               I V      Y  G E  L++++  ++      P 
Sbjct: 215 LMTK-VASSYAG--------------IEVVSLKVQYPQGGEKQLIDAVINRQVAAGALPI 259

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCT 253
                        V NV +   V   ++          +      ++ +++G  +  P  
Sbjct: 260 STG--------AVVQNVGTAFAVYQAVQ----------KNKPLFERVITVTGKSLIKPSN 301

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
               +     +LI   CGG+    ++   +I GG  +    A                 +
Sbjct: 302 FLARIGTPMQQLI-DACGGL---PEDTGKIIGGGPMMG--KALVNTDVP----------T 345

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             G++ +++M++     K   R  +    + C +C  C       + 
Sbjct: 346 AKGSSGILIMNK-----KEAKRGEI----QPCIRCAKCVGACPMGLE 383


>gi|18310391|ref|NP_562325.1| hypothetical protein CPE1409 [Clostridium perfringens str. 13]
 gi|18145071|dbj|BAB81115.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 436

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 102/330 (30%), Gaps = 66/330 (20%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           +N+    +     ++  VK  G+ G GGA F   +K +           Y+++NA E EP
Sbjct: 111 ENLKYSSKLSLKDVVKLVKDYGIVGLGGATFPCHVKLNV---KEDKEIKYIIINAAECEP 167

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M      +I G  I          +I +    +   +  +            
Sbjct: 168 YLTCDHRVMLEYTEEIIGGLRILLELFPKALIYIGIEDNKLNAIDKFK------------ 215

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
              S LG D  I V      Y  G E  L+ +L   +         P ++G         
Sbjct: 216 ---SILGEDNKIKVMPLKSKYPQGSEKHLIYALTKLQV---PSGKLPLDIG-----CIAF 264

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +I  +   L  G               ++ +++G  +  P  +   +     ++IE 
Sbjct: 265 NVSTIYQLYASLINGLPLT----------ERIITVTGDSIRSPKNLRVKIGTQVKDIIE- 313

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            CGG     +    +I GG  +    +       +            GT+ ++ + +   
Sbjct: 314 FCGGFINKPNK---IILGGPMMG--TSVNSLDLPITK----------GTSGILCLSKVD- 357

Query: 329 IIKAIWRLSVFYKHES-CGQCTPCREGTGW 357
                          S C +C  C      
Sbjct: 358 -----------TSPNSHCIRCGKCLNSCPM 376


>gi|255281825|ref|ZP_05346380.1| PduS protein [Bryantella formatexigens DSM 14469]
 gi|255267498|gb|EET60703.1| PduS protein [Bryantella formatexigens DSM 14469]
          Length = 449

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 119/320 (37%), Gaps = 53/320 (16%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I  VKA+G+ G GGAGF T +K +        +  Y +VNA E EP    D+ + R   
Sbjct: 3   LIETVKAAGVVGAGGAGFPTHVKLNT-------KVEYFIVNAAECEPLIETDKYLCRTWA 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++    + +  +GA    I ++ ++ RE  +L+ AV+ C +              D+ 
Sbjct: 56  ERIVRTIPVIADFLGASKKVIALKAKYEREIAALKQAVETCGS--------------DVE 101

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +      Y  G+E  L++ + G+    R     P++VG       V+NV ++  +   L 
Sbjct: 102 IFGLGYFYPAGDEQTLIQQVTGRSVPERG---LPSDVG-----CVVDNVGTVLNIADALE 153

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                            K  S+ G V     +   +     E +++          +  A
Sbjct: 154 -----------GKPVTEKYLSVVGEVRQTLLLRVPVGTPVLECVKEA-----QPLISDYA 197

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
           +I GG          M   + +   ++       T  ++V+ +   + K         K 
Sbjct: 198 LIMGGP--------MMGKQLTERTAMEAAVVTKTTGNIMVLPKEHYLFKRAALPMETIKR 249

Query: 343 ESCGQCTPCREGTGWMMRVM 362
           ++   C  CR  T    R +
Sbjct: 250 QTRSACIQCRMCTDLCPRYL 269


>gi|330836500|ref|YP_004411141.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta
           coccoides DSM 17374]
 gi|329748403|gb|AEC01759.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta
           coccoides DSM 17374]
          Length = 438

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 103/321 (32%), Gaps = 62/321 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
                 +   +   G+ G GGA F T +K   +      R   L++N  E EP    D  
Sbjct: 123 TLTPAELSALIHEMGVVGAGGAAFPTHVK---LAVPPGRRLDALIINGSECEPYVTADHR 179

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M      L+EG  I    +     +I +    +     LQ  +                
Sbjct: 180 LMLEHADELLEGIAILKRILSPPAVYIGIEKNKMDAVTLLQDKI--------------SA 225

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
             + I V      Y  G+E  L+ ++ G +  P+ K P  A          V NV ++  
Sbjct: 226 QGLAITVCPLQTKYPEGDEKILINAILG-REIPQGKLPIDAGA-------IVTNVSTVYA 277

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +         +            ++ +++G  +  P  +   + +   +++E +CGG   
Sbjct: 278 IRQGCACKMPFID----------RVITVTGECIARPANLLVPIGVKVRDVVE-YCGGYSS 326

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L   I GG  +          A +     K M   +   +V V   +  I      
Sbjct: 327 TPGKL---ITGGPMMGF---EVDEDAPVT----KGMDGIVALPSVPVRPTTPCI------ 370

Query: 336 LSVFYKHESCGQCT-PCREGT 355
                   SCG+C   C  G 
Sbjct: 371 --------SCGRCLDACPVGL 383


>gi|207857488|ref|YP_002244139.1| propanediol utilization ferredoxin [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206709291|emb|CAR33631.1| propanediol utilization ferredoxin [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 451

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++    +    A+     +G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRWAID----ALTPLLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|237736261|ref|ZP_04566742.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421609|gb|EEO36656.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           mortiferum ATCC 9817]
          Length = 436

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 133/384 (34%), Gaps = 71/384 (18%)

Query: 29  WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI       +  ++  ++  G+ G GGA F T +K +       D    L++N  
Sbjct: 107 WAELPKIENWETADKKDLLAMIREKGIVGIGGASFPTHIKLNPPADAKID---TLLLNGA 163

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P  +I G  I    +G + A + +         S++ A +    
Sbjct: 164 ECEPYLNSDNRLMLEHPEKIINGIKIIKKILGVNTAIVGIEENKPEAIASMKKAAE---- 219

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++++  ++         P+ VG+    
Sbjct: 220 --------GTG----IEIAPLKTKYPQGGEKQLIKAVLDRQV---PSGKLPSAVGV---- 260

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   +  G               K+ ++SG  +  P  V+ ++   F  
Sbjct: 261 -VVQNTGTAAAIYDGIVNGIPLI----------EKVVTVSGKAIANPKNVKVAIGTPFSY 309

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++  +CG  R   D L   + GG  +                  +E     GT+ ++ + 
Sbjct: 310 IL-DYCGVNREVVDKL---VMGGPMMGM------------AQFSEEAPVIKGTSGLLALT 353

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL--YEVS 382
           +           +  YK   C  C  C E     +  +  +   +A   + + L  Y + 
Sbjct: 354 KEE---------TNPYKTRPCIGCGKCVEACPMGLEPL--MFARLASFEQWEQLGQYNLM 402

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 403 DCIECGS-CAYICPANRPLTEAIK 425


>gi|253582593|ref|ZP_04859814.1| NADH dehydrogenase [Fusobacterium varium ATCC 27725]
 gi|251835463|gb|EES64003.1| NADH dehydrogenase [Fusobacterium varium ATCC 27725]
          Length = 436

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 135/384 (35%), Gaps = 71/384 (18%)

Query: 29  WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI       +  ++  ++  G+ G GGA F T +K +    V  D    L++N  
Sbjct: 107 WAELTKIENWETADKKDLLAMIREKGIVGIGGASFPTHVKLNPPADVKID---TLLLNGA 163

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P T+IEG  I    +G   A I +         S++ A +    
Sbjct: 164 ECEPYLNSDNRLMLEHPETIIEGIKIIKKVLGVETAIIGIEENKPEAIASMKKAAE---- 219

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++++   +  P  K   P+ VG+    
Sbjct: 220 --------GTG----IEIAPLKTKYPQGGEKQLIKAVLD-REVPSGK--LPSAVGV---- 260

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   L  G               K+ ++SG  +  P  ++ ++   F  
Sbjct: 261 -VVQNTGTAAAIYEGLVNGTPLI----------EKVVTVSGKAIANPKNIKIAIGTPFSY 309

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++++         D +  ++ GG  +                  +E     GT+ ++ + 
Sbjct: 310 ILDQCG----VNRDVMDKLVMGGPMMGM------------AQFSEEAPVIKGTSGLLALT 353

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
           +           +  YK ++C  C  C      ++   +  RL        EI   Y + 
Sbjct: 354 KEE---------TNPYKPKACIGCGKCIGACPMLLEPIMFARLAAFEQW-EEIGK-YNLM 402

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 403 DCIECGS-CAYICPANRPLTEAIK 425


>gi|205353196|ref|YP_002226997.1| propanediol utilization ferredoxin [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272977|emb|CAR37924.1| propanediol utilization ferredoxin [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326628282|gb|EGE34625.1| propanediol utilization ferredoxin [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 451

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPLLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|291546974|emb|CBL20082.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Ruminococcus sp. SR1/5]
          Length = 442

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 99/301 (32%), Gaps = 57/301 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T MK +       D+   +++N  E EP     R ++    + +++   + +  +GA 
Sbjct: 23  FPTYMKLT-------DKADTILMNCAECEPLLKLHRQLLEKHAYEIMKTFDMVAETVGAS 75

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++  +++   +L   ++E                  + +H     Y  G+E  L+
Sbjct: 76  QAIIGIKKSYVQTINALNQHIEEF---------------PRVKIHLLDEVYPMGDEVVLI 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G+  +P      P   G+      V NVE++  V   +                  
Sbjct: 121 YEATGRVVRP---GGLPIEQGV-----AVFNVETLYNVYRAVEEHKPVTC---------- 162

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  S+   V  P TV+  +  T +E++ +  G              GG  +  +  G   
Sbjct: 163 KYVSVVAEVENPVTVKVPLGCTLEEVVAQAGGTTVKDP----VYFVGGPMMGRIGNGSDP 218

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
                            T A++V+ +   I+    R S      +   C  C   T    
Sbjct: 219 VT-------------KTTNAILVLPKDHVIVMKKQRTSSIDLKRAASICCHCHTCTDLCP 265

Query: 360 R 360
           R
Sbjct: 266 R 266


>gi|302338423|ref|YP_003803629.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635608|gb|ADK81035.1| electron transport complex, RnfABCDGE type, C subunit [Spirochaeta
           smaragdinae DSM 11293]
          Length = 442

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/331 (19%), Positives = 114/331 (34%), Gaps = 65/331 (19%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G W  +        + ++ +V  +G+ G GGA F + +K+S      ++   Y VVN  E
Sbjct: 117 GDWTQL------SAEALMAKVVENGIVGLGGATFPSHVKFSVPKGKKAE---YFVVNGVE 167

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EP    D  +M      +IEG  I S    A    I +         S++A        
Sbjct: 168 CEPYLTADHRLMLERADQIIEGIRIISRITNAEKLAIGIEINKPDAIASMKA-------- 219

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                 +     V + V      Y  G+E  LL+++ G++         P ++G      
Sbjct: 220 ------AAQKAKVKLDVVPLKVKYPQGDEKQLLKAITGREV---PSGGLPLDIG-----A 265

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSIS-GHVNYPCTVEESMSITFDEL 265
            V NV ++  V          +           +  +++ G +  P  ++  +      L
Sbjct: 266 IVANVGTVHAV----------FEAVVFNKPLIERAVTVTGGAIADPQNLKVRIGTPIKTL 315

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           IE+  G      +    ++ GG  +            +            GT+ ++ + R
Sbjct: 316 IEECGG----FTEEPAKIVMGGPMMGFTIYD--LDTPV----------IKGTSGILALTR 359

Query: 326 STDIIKAIWRLSVFYKHESCGQCT-PCREGT 355
               ++A  R   F    SCG+C   C  G 
Sbjct: 360 RE--VRASTR--TFCI--SCGRCVAACPMGL 384


>gi|262171980|ref|ZP_06039658.1| electron transport complex protein RnfC [Vibrio mimicus MB-451]
 gi|261893056|gb|EEY39042.1| electron transport complex protein RnfC [Vibrio mimicus MB-451]
          Length = 867

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 103/331 (31%), Gaps = 70/331 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E 
Sbjct: 127 DYQQL------SPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAEC 176

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR   + +I+G  I    +      I +                      
Sbjct: 177 EPYITADDVLMRQHANEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA------------- 223

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
              +  +   D  +++      Y  G E  L++ L   +     K   PA++GL      
Sbjct: 224 ---ALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----L 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV S+  +   +  G               ++ +++G     P  V   +      L+
Sbjct: 273 VQNVGSLQAIARAILHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +           L  +I GG  +                        L  A V +   +
Sbjct: 323 NEFGY---KADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTA 358

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
             I+           HE +C +C  C +   
Sbjct: 359 NCILAPTRNELTNSDHEMACIRCGQCADACP 389


>gi|262165247|ref|ZP_06032984.1| electron transport complex protein RnfC [Vibrio mimicus VM223]
 gi|262024963|gb|EEY43631.1| electron transport complex protein RnfC [Vibrio mimicus VM223]
          Length = 825

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 103/331 (31%), Gaps = 70/331 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E 
Sbjct: 127 DYQQL------SPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAEC 176

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR   + +I+G  I    +      I +                      
Sbjct: 177 EPYITADDVLMRQHANEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA------------- 223

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
              +  +   D  +++      Y  G E  L++ L   +     K   PA++GL      
Sbjct: 224 ---ALQQAAQDKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----L 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV S+  +   +  G               ++ +++G     P  V   +      L+
Sbjct: 273 VQNVGSLQAIARAILHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +           L  +I GG  +                        L  A V +   +
Sbjct: 323 NEFGY---KADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTA 358

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
             I+           HE +C +C  C +   
Sbjct: 359 NCILAPTRNELTNSDHEMACIRCGQCADACP 389


>gi|260773218|ref|ZP_05882134.1| electron transport complex protein RnfC [Vibrio metschnikovii CIP
           69.14]
 gi|260612357|gb|EEX37560.1| electron transport complex protein RnfC [Vibrio metschnikovii CIP
           69.14]
          Length = 734

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 103/320 (32%), Gaps = 64/320 (20%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + +I  ++ +G+ G GGAGF T  K          R   L++NA E EP    D  +M
Sbjct: 132 SAEQLIEIIRNAGISGMGGAGFPTAKKIQTGLS----RTEILIINAAECEPYITADDALM 187

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     +I+G  I    +      I +        ++L+ A        LL         
Sbjct: 188 RFHADEIIQGISIVEHILRPKLTIIGIEDNKPEAIQALEQA---AKEKDLL--------- 235

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
               +      Y  G E  L++ L   +         PA++GL      + N+ SI  + 
Sbjct: 236 ----IRVIPTKYPSGGEKQLIKILTNLEV---PNNGIPADIGL-----MMQNIGSIHAIK 283

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +  G               ++ +++G+    P  V   +      L+EK         
Sbjct: 284 RAVIDGEPLIQ----------RVVTLTGNTFKQPTNVWTLLGTPVAHLLEKFAY---QAD 330

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR-L 336
             L  +I GG  +                        L  A V +   S  I+    + +
Sbjct: 331 KKLPRLIMGGPMMGF---------------------TLPHAQVPITKTSNCILAPTSKEI 369

Query: 337 SVFYKHESCGQCTPCREGTG 356
           S      +C +C  C +   
Sbjct: 370 SAPQAEMACIRCGLCADACP 389


>gi|167553155|ref|ZP_02346905.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322355|gb|EDZ10194.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 451

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+      G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPLLPDG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQRFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|313638342|gb|EFS03561.1| PduS type ferredoxin, putative [Listeria seeligeri FSL S4-171]
          Length = 455

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 118/323 (36%), Gaps = 52/323 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 2   LSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 54

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A +  +  +  E  +LQAA+ E               
Sbjct: 55  MRNHAVETIKAIEMVKSQVGAEFAVVATKRYYTEEIAALQAAIQEL-------------- 100

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 101 DSSVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 152

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              +   A              K  +++G V  P  ++  +   F+  +    G      
Sbjct: 153 FHAIDDDAPVIR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGG------ 196

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                     S    L  G M G + +   + E      T+ +IV + +  + K  ++  
Sbjct: 197 -------TNLSEYLFLDGGPMMGKLNNQSTISEKVVTKTTSGLIVTEDTGYLHKLHYQTV 249

Query: 338 VFYKHESCGQCTPCREGTGWMMR 360
               +E+   C  C   T    R
Sbjct: 250 EQIFNETKSACIQCTLCTDLCPR 272


>gi|257470433|ref|ZP_05634524.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium ulcerans
           ATCC 49185]
 gi|317064641|ref|ZP_07929126.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium ulcerans
           ATCC 49185]
 gi|313690317|gb|EFS27152.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium ulcerans
           ATCC 49185]
          Length = 436

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 135/384 (35%), Gaps = 71/384 (18%)

Query: 29  WDNVDKIL---EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  + KI       +  ++  ++  G+ G GGA F T +K +    V  D    L++N  
Sbjct: 107 WAELTKIENWETADKKDLLAMIREKGIVGIGGASFPTHVKLNPPADVKID---TLLLNGA 163

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +M   P T+IEG  I    +G   A I +         S++ A +    
Sbjct: 164 ECEPYLNSDNRLMLEHPETIIEGIKIIKKVLGVETAIIGIEENKPEAIASMKKAAE---- 219

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G    I +      Y  G E  L++++   +  P  K   P+ VG+    
Sbjct: 220 --------GTG----IEIAPLKTKYPQGGEKQLIKAVLD-REVPSGK--LPSAVGV---- 260

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDE 264
             V N  + A +   L  G               K+ ++SG  +  P  ++ ++   F  
Sbjct: 261 -VVQNTGTAAAIYEGLVNGTPLI----------EKVVTVSGKAIANPKNIKIAIGTPFSY 309

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           ++++         D +  ++ GG  +                  +E     GT+ ++ + 
Sbjct: 310 ILDQCG----VNRDIMDKLVMGGPMMGM------------AQFSEEAPVIKGTSGLLALT 353

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREIDLLYEVS 382
           +           +  YK ++C  C  C      ++   +  RL        EI   Y + 
Sbjct: 354 KEE---------TNPYKPKACIGCGKCIGACPMLLEPIMFARLAAFEQW-EEIGK-YNLM 402

Query: 383 KNIEGRTICALGDAAAWPIQGLIK 406
             IE  + CA    A  P+   IK
Sbjct: 403 DCIECGS-CAYICPANRPLTEAIK 425


>gi|89893157|ref|YP_516644.1| hypothetical protein DSY0411 [Desulfitobacterium hafniense Y51]
 gi|89332605|dbj|BAE82200.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 463

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 113/324 (34%), Gaps = 58/324 (17%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            R+ +I ++K +G+ G GGAGF T +K        + +   ++VN  E EP    D+ +M
Sbjct: 13  MREELIQKIKKAGVVGAGGAGFPTHVK-------VNSKARTVLVNGAECEPLLRVDQQLM 65

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             +   ++ G  +     GA    I ++ ++     +L+  +               G  
Sbjct: 66  AGQAPKVVMGLELVMSVTGAKEGIISLKHKYHDAISALEKEI--------------SGKP 111

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I +H     Y  G+E   +    G +  P+   P   +         V+NVE++  + 
Sbjct: 112 --IRIHILDDFYPAGDEHVTVYESTG-RLVPQGSIPLKVD-------CVVHNVETLLNIV 161

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
             +            +        +I+G VN P T+   +  +  E +            
Sbjct: 162 DAVA-----------DQPVTDTYLTITGEVNQPLTLRLPIGTSISEALAIAG----YHDS 206

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
             + VI GG  +  + A   +                 T  +IV+ R   +++     + 
Sbjct: 207 EGMQVIEGGPMMGKIVADLHQPIT------------KTTKGLIVLPREHPLLRLKTLPAD 254

Query: 339 FYKHESCGQCTPCREGTGWMMRVM 362
               +S   C  CR  T    R +
Sbjct: 255 KVLRQSRASCVQCRFCTDLCPRYL 278


>gi|225620587|ref|YP_002721844.1| electron transport complex protein [Brachyspira hyodysenteriae WA1]
 gi|225215406|gb|ACN84140.1| electron transport complex protein [Brachyspira hyodysenteriae WA1]
          Length = 435

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 39/260 (15%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           +    + +  +++ +G+ G GGA F T +K     K  +D    L++N  E EP    D 
Sbjct: 118 MSMSAEEMSKKIQQAGIVGMGGATFPTHVKVDGAAKGNAD---TLIINGVECEPYITSDY 174

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHC-AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
            +M      L +G  I    + +     I +     +  E                  +K
Sbjct: 175 RLMIEYAQDLFKGIDILRKIVPSVKRTIIGIENNKPKAIE----------------EMAK 218

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
           +G + ++ V      Y  G E  L+E+  G +  P  K   P +VG+      V N+ ++
Sbjct: 219 IGKEHNVEVMALRLRYPQGAEKMLIEATTG-RIVPVSK--LPMDVGV-----IVVNIATL 270

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGI 273
             +          Y    +      +L +ISG  +     V   +      ++E+  G  
Sbjct: 271 YAI----------YEAVAKNKPLMERLVTISGDAIKEHKNVWLPLGTPISHVVEECGGIT 320

Query: 274 RGGWDNLLAVIPGGSSVPCL 293
                 L      G+++P L
Sbjct: 321 AENVLILSGGPMMGAAIPNL 340


>gi|116872516|ref|YP_849297.1| pduS type ferredoxin, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741394|emb|CAK20518.1| pduS type ferredoxin, putative [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 454

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 120/323 (37%), Gaps = 55/323 (17%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 1   MSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A I  +  +  E  +L+ A+ E  A            
Sbjct: 54  MRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRLAITELNA------------ 101

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 102 --SVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              ++  A              K  +++G VN P  ++  +   F+  +    G     +
Sbjct: 152 YHAIQDDAPVVR----------KQLTVTGAVNEPKLLDVPIGTPFEVCLAAAGGTNLDEY 201

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG  +  L              + E      T+ +IV + +  + K  ++  
Sbjct: 202 LFL----DGGPMMGKLNDQ---------STIAEKVVTKTTSGLIVTEDTGYLHKLHYQTV 248

Query: 338 VFYKHES---CGQCTPCREGTGW 357
               +E+   C QC+ C +    
Sbjct: 249 EQIFNETKSACIQCSLCSDLCPR 271


>gi|313904978|ref|ZP_07838349.1| electron transport complex, RnfABCDGE type, C subunit [Eubacterium
           cellulosolvens 6]
 gi|313470235|gb|EFR65566.1| electron transport complex, RnfABCDGE type, C subunit [Eubacterium
           cellulosolvens 6]
          Length = 439

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 125/351 (35%), Gaps = 67/351 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
              ++ I+  ++ +G+ G GGAGF T +K    PK  S +  Y++VN  E EP    D  
Sbjct: 117 SLTKEQILERIREAGVVGMGGAGFPTAVK--LAPKDPS-KVDYILVNGSECEPYLTSDYR 173

Query: 97  IMRHEPHTLIEGCVIASFAIGAHC-AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            M  +P  ++ G  I     G++C   I +     +    ++ A+               
Sbjct: 174 CMIEKPEKIVAGLEIILGLFGSNCQGVICIENNKPKAVRVMEDAIKG------------- 220

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
               ++ V      Y  G E  L+ ++ G+    ++    PA+ G       V+NV ++ 
Sbjct: 221 --KTNMSVKVVKTKYPEGAERCLINAITGRYVTSKM---LPADAG-----CIVDNVGTVM 270

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHV-NYPCTVEESMSITFDELIEKHCGGIR 274
            V   +  G               ++F+++G   + P      + +++ E+IE+  GG +
Sbjct: 271 AVYDAVVNG----------KPLTKRVFTLTGDAPSDPKNYLVPVGMSYSEIIEQ-GGGFK 319

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              +    +I GG  +    A              E+     + A+    +     +   
Sbjct: 320 AEPEK---IISGGPMMGFALADT------------EIPVTKTSGALTCFLKD----EVAA 360

Query: 335 RLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQK--REIDLLYEV 381
                 K  SC  C  C +G     M   +    K        E D L  V
Sbjct: 361 H-----KTGSCINCGRCMKGCPARLMPNKLADFAKHGDAASFEEYDGLECV 406


>gi|254457413|ref|ZP_05070841.1| formate dehydrogenase, beta subunit [Campylobacterales bacterium GD
           1]
 gi|207086205|gb|EDZ63489.1| formate dehydrogenase, beta subunit [Campylobacterales bacterium GD
           1]
          Length = 664

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGW 357
                YD  ++  + +G   V + +   D+I+     +  Y+   E+CG+C P R G   
Sbjct: 30  NLPATYDDHRDSKAFIGWDGVSLFNEDVDVIRLAMEYAAQYQVYSEACGRCAPGRWGGRI 89

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +   ++++ +G     ++D L E+ K+++  + C +G     PI  L+ +F     + I+
Sbjct: 90  LYDQLDKIARGEGAIADMDHLKEIGKSMQITSKCEIGKTVPNPIIDLMTHFEDEFMDCIN 149

Query: 418 QYH 420
              
Sbjct: 150 NQK 152


>gi|268611858|ref|ZP_06145585.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 425

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 109/342 (31%), Gaps = 59/342 (17%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            ++  +  V+ SG  G GGAGF T +K +  PK   D    L++N  E EP    D   M
Sbjct: 114 DKESFLKAVRESGACGLGGAGFPTHIKLN--PKTPID---TLIINGAECEPYITADYREM 168

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
              P  +I G  +    +G   A + +        ++ +           +  N     D
Sbjct: 169 IECPDDVIGGVNLIKDMLGIKNAKLAIEANKPEAIKNFEE----------MAKN-----D 213

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I +      Y  G E  ++       G    +   PA+ G+      V N+ ++A + 
Sbjct: 214 DTIDIITLPSVYPQGAEKIIIY---NSTGVVVKEGELPADGGV-----IVINISTVAFLY 265

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             ++ G               +  ++ G+ V  P  V   +   F E++E      +   
Sbjct: 266 RYMQDGMPLVK----------RRITVDGNAVGEPKNVSAVIGTPFREILEF----CKTDM 311

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA----- 332
           D ++ +I GG  +           +   + L  + S   +     +     +        
Sbjct: 312 DAMIKLIGGGPMMGMSIPDVEMPVVKTSNALLAIKSYDVSKTTSCIRCGRCVRVCPMELV 371

Query: 333 ---------IWRLSVFYKHES--CGQCTPCREGTGWMMRVME 363
                    I  +    K     C  C  C        ++ E
Sbjct: 372 PADIDRAYRIRNIDELKKLNVLLCMNCGSCTYVCPANRKLAE 413


>gi|258627117|ref|ZP_05721913.1| RnfC-related protein [Vibrio mimicus VM603]
 gi|258580635|gb|EEW05588.1| RnfC-related protein [Vibrio mimicus VM603]
          Length = 820

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 102/331 (30%), Gaps = 70/331 (21%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +        + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E 
Sbjct: 127 DYQQL------SPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAEC 176

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR   + +I+G  I    +      I +                      
Sbjct: 177 EPYITADDVLMRQHANEIIQGIEIVEHILKPKLTIIGIEDNKPEAVA------------- 223

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
              +  +      +++      Y  G E  L++ L   +     K   PA++GL      
Sbjct: 224 ---ALQQAAQHKPMVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----L 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV S+  +   +  G               ++ +++G     P  V   +      L+
Sbjct: 273 VQNVGSLQAIARAILHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +           L  +I GG  +                        L  A V +   +
Sbjct: 323 NEFGY---KADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTA 358

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
             I+           HE +C +C  C +   
Sbjct: 359 NCILAPTRNELTSSDHEMACIRCGQCADACP 389


>gi|46907359|ref|YP_013748.1| PduS protein [Listeria monocytogenes serotype 4b str. F2365]
 gi|46880626|gb|AAT03925.1| PduS protein [Listeria monocytogenes serotype 4b str. F2365]
          Length = 454

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 122/323 (37%), Gaps = 55/323 (17%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 1   MSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A I  +  +  E  +L++A+ E               
Sbjct: 54  MRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITEL-------------- 99

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 100 DASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              ++  A              K  +++G V  P  ++  +   F+  +    G     +
Sbjct: 152 FHAIQDDAPVVR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEY 201

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG          M G + D   + E      T+ +IV + +  + K  ++  
Sbjct: 202 LFL----DGGP---------MMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQTV 248

Query: 338 VFYKHES---CGQCTPCREGTGW 357
               +E+   C QC+ C +    
Sbjct: 249 EQIFNETKSACIQCSLCSDLCPR 271


>gi|256822166|ref|YP_003146129.1| RnfABCDGE type electron transport complex subunit C [Kangiella
           koreensis DSM 16069]
 gi|256795705|gb|ACV26361.1| electron transport complex, RnfABCDGE type, C subunit [Kangiella
           koreensis DSM 16069]
          Length = 539

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 88/257 (34%), Gaps = 43/257 (16%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +  R  I+  +  SG+ G GGA F T +K     K  S     L++NA E EP    D  
Sbjct: 129 DLERAEILAHICESGIVGLGGASFPTHIKL----KRESGIH-TLIINAAECEPYITCDDR 183

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +++    ++ +G  I S         I +        ++L +A  E              
Sbjct: 184 LLQEHAQSVFKGAQIISQLYQDLKIIIGIEDNKPDAIDALVSARKELAMD---------- 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              D+ +      Y  G E  L++ + GK+         PA++GL      ++NV +   
Sbjct: 234 ---DVKIAVIPTKYPSGGEKQLIQLITGKEV---PHGGLPADLGL-----VMHNVATCFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +      G    S          ++ +++G         +       + L++        
Sbjct: 283 IFQAFEYGKPLVS----------RVVTLTGEACQKAGNYQVPFGTPVEHLMK------IS 326

Query: 276 GWDNLLAVIPGGSSVPC 292
              N   ++ GG  +  
Sbjct: 327 EATNPGVLVMGGPMMGF 343


>gi|258611525|ref|ZP_05233188.2| PduS protein [Listeria monocytogenes FSL N3-165]
 gi|258600897|gb|EEW14222.1| PduS protein [Listeria monocytogenes FSL N3-165]
          Length = 454

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 120/324 (37%), Gaps = 55/324 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 1   MSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A I  +  +  E  +L++A+ E               
Sbjct: 54  MRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITEL-------------- 99

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 100 DASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              ++  A              K  +++G V  P  ++  +   F+  +    G     +
Sbjct: 152 FHAIQDDAPVVR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTTLNEY 201

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG  +  L              + +      T+ +IV + +  + K  ++  
Sbjct: 202 LFL----DGGPMMGKLNDQ---------STIADKVVTKTTSGLIVAEDTGYLHKLHYQTV 248

Query: 338 VFYKHES---CGQCTPCREGTGWM 358
               +E+   C QC+ C +     
Sbjct: 249 EQIFNETKSACIQCSLCSDLCPRQ 272


>gi|47094983|ref|ZP_00232596.1| PduS protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258612133|ref|ZP_05267836.2| PduS protein [Listeria monocytogenes F6900]
 gi|293596510|ref|ZP_05261826.2| PduS protein [Listeria monocytogenes J2818]
 gi|47016601|gb|EAL07521.1| PduS protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258608728|gb|EEW21336.1| PduS protein [Listeria monocytogenes F6900]
 gi|293589768|gb|EFF98102.1| PduS protein [Listeria monocytogenes J2818]
          Length = 454

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 120/323 (37%), Gaps = 55/323 (17%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 1   MSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A I  +  +  E  +L++A+ E               
Sbjct: 54  MRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITEL-------------- 99

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 100 DASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              ++  A              K  +++G V  P  ++  +   F+  +    G     +
Sbjct: 152 FHAIQDDAPVVR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTTLNEY 201

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG  +  L              + +      T+ +IV + +  + K  ++  
Sbjct: 202 LFL----DGGPMMGKLNDQ---------STIADKVVTKTTSGLIVAEDTGYLHKLHYQTV 248

Query: 338 VFYKHES---CGQCTPCREGTGW 357
               +E+   C QC+ C +    
Sbjct: 249 EQIFNETKSACIQCSLCSDLCPR 271


>gi|238792600|ref|ZP_04636232.1| Cobalamin reductase [Yersinia intermedia ATCC 29909]
 gi|238727956|gb|EEQ19478.1| Cobalamin reductase [Yersinia intermedia ATCC 29909]
          Length = 453

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 94/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     +         +VNA E EP    D+ +M  +   L+ G +    A GA 
Sbjct: 33  FPTAVKLQAQAE-------IFLVNAAECEPMLKVDQQLMPRQAARLVRGVLYGMKATGAR 85

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++     +L   +                    I +H     Y  G+E   +
Sbjct: 86  EGIIALKAKYSEAIAALTPLL-----------------PPQIRLHILPDVYPAGDEVITI 128

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P ++G+      VNNV+++  V   + +   W            
Sbjct: 129 WLATGRRVPP---AALPVSIGV-----VVNNVQTLLNVARAVEQ--QWPVTR-------- 170

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   +     E++    G          A I GG  +    A    
Sbjct: 171 RTLTVNGAVAKPLTLTVPLGTPLREVLALAGGATINNP----AYINGGPMMGH--ALHDL 224

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF---YKHESCGQCTPCREGTG 356
              +             T  ++V+     +I    R            C QC  C E   
Sbjct: 225 DQPVTKT----------TGGLLVLPADHLLITRRARSDQDVLAIARTVCEQCRMCTELCP 274

Query: 357 W 357
            
Sbjct: 275 R 275


>gi|219666429|ref|YP_002456864.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfitobacterium hafniense DCB-2]
 gi|219536689|gb|ACL18428.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfitobacterium hafniense DCB-2]
          Length = 451

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 111/324 (34%), Gaps = 58/324 (17%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            R+ +I ++K +G+ G GGAGF T +K        + +   ++VN  E EP    D+ +M
Sbjct: 1   MREELIEKIKKAGVVGAGGAGFPTHVK-------VNSKARTVLVNGAECEPLLRVDQQLM 53

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             +   ++ G  +     GA    I ++ ++     +L+  +               G  
Sbjct: 54  AGQASKVVMGLELVMSVTGAKEGIISLKHKYHDAISALEKEI--------------SGKP 99

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I +H     Y  G+E   +    G +  P+   P   +         V+NVE++    
Sbjct: 100 --IRIHILDDFYPAGDEHVTVYESTG-RLVPQGSIPLKVD-------CVVHNVETLLNTV 149

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
             +            +        +I+G VN P T+   +     E +            
Sbjct: 150 DAVA-----------DQPVTDTYLTITGEVNQPLTLRLPIGTAISEALAMAG----YHDS 194

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
             + VI GG  +  + A   +                 T  +IV+ R   +++     + 
Sbjct: 195 GGMQVIEGGPMMGKIVADLHQPIT------------KTTKGLIVLPREHPLLRLKTLPAD 242

Query: 339 FYKHESCGQCTPCREGTGWMMRVM 362
               +S   C  CR  T    R +
Sbjct: 243 KVLRQSRVSCVQCRFCTDLCPRYL 266


>gi|313633764|gb|EFS00506.1| PduS type ferredoxin, putative [Listeria seeligeri FSL N1-067]
          Length = 455

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 118/323 (36%), Gaps = 52/323 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 2   LSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 54

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A +  +  +  E  +L+AA+ E               
Sbjct: 55  MRNHAVETIKAIEMVKSQVGAEFAVVATKRYYTEEIAALRAAIQEL-------------- 100

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 101 DSSVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 152

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              +   A              K  +++G V  P  ++  +   F+  +    G      
Sbjct: 153 FHAIDDDAPVIR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGG------ 196

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                     S    L  G M G + +   + E      T+ +IV + +  + K  ++  
Sbjct: 197 -------TNLSEYLFLDGGPMMGKLNNQSTISEKVVTKTTSGLIVTEDTGYLHKLHYQTV 249

Query: 338 VFYKHESCGQCTPCREGTGWMMR 360
               +E+   C  C   T    R
Sbjct: 250 EQIFNETKSACIQCTLCTDLCPR 272


>gi|254785634|ref|YP_003073063.1| electron transport complex, RnfABCDGE type, C subunit
           [Teredinibacter turnerae T7901]
 gi|237685331|gb|ACR12595.1| electron transport complex, RnfABCDGE type, C subunit
           [Teredinibacter turnerae T7901]
          Length = 505

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 106/328 (32%), Gaps = 62/328 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++    + N V  +G+ G GGA F   +K     +        ++VN  E EP    D  
Sbjct: 125 DEEPLTLANRVANAGIVGMGGAIFPAAVKLK---QGTRHEIKTVLVNGSECEPFLTCDDR 181

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR +   ++EG  +    + A+ A I               A+++     +    +   
Sbjct: 182 LMREKAEEIVEGARLIRHILRAYKAVI---------------AIEDNKPEAIAAMRAAAE 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + V      Y  G    L++ + G++           +VG+      V+NV ++  
Sbjct: 227 PYGMVEVEAVPSMYPMGSAKQLIQEITGREV---PAGARSTSVGV-----LVHNVGTVYA 278

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           +   L  G    S                G +N P  V   +      LI   CGG+ G 
Sbjct: 279 IHQALTYGRPLVSRIVT---------VAGGAINRPRNVNALVGTPVQHLI-DACGGLNGD 328

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              L   I GG          M G  +    +  +    G             + A+ + 
Sbjct: 329 PAKL---ILGGP---------MMGVPLLSTQVPTIKGATG-------------VLALAKH 363

Query: 337 SVFYKHES-CGQCTPCREGTGWMMRVME 363
            V     S C +C  C E     +  +E
Sbjct: 364 EVPRSEASPCIRCASCVEACPMGLLPLE 391


>gi|261856372|ref|YP_003263655.1| electron transport complex, RnfABCDGE type, C subunit
           [Halothiobacillus neapolitanus c2]
 gi|261836841|gb|ACX96608.1| electron transport complex, RnfABCDGE type, C subunit
           [Halothiobacillus neapolitanus c2]
          Length = 567

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/336 (17%), Positives = 99/336 (29%), Gaps = 57/336 (16%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
               +   ++ +G+ G GGA F T  K +            L++N  E EP    D  +M
Sbjct: 132 SPAQLRGRLREAGIVGLGGAVFPTASKMATGQAA----VRTLILNGAECEPYITCDDRLM 187

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R +P  ++ G  IA   IGA    I +         +LQ+A                  D
Sbjct: 188 REQPAEILRGAAIAMHMIGAERCLIGIEDNKPEALAALQSA---------------SRSD 232

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
               V+     Y  G E  L++ L   +  PR         GL        NV ++  + 
Sbjct: 233 PRFEVYSVPTRYPAGGEKQLIKVLTNIE-VPRG--HRAIEYGL-----LCLNVATVVGIH 284

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
             +  G             G         +  P  ++  +     +++ +  GG R   D
Sbjct: 285 RAVTLGEPMLDRIVTVTGEG---------IAQPENLQVRIGTLMSDVVAE-AGGYRSEVD 334

Query: 279 NLLAVIPG------GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
            L+   P       G  VP + A     A+   D  +             +         
Sbjct: 335 RLIMGGPMMGFALHGDEVPVVKATNCLLALRPQD--RPAEPAPQPCIRCSLCAEACPADL 392

Query: 333 IWRLSVFYKHES------------CGQCTPCREGTG 356
           + +   +Y                C +C  C     
Sbjct: 393 LPQQLYWYARAKQFDRVVEYHLFDCIECGVCSAVCP 428


>gi|34762677|ref|ZP_00143668.1| Electron transport complex protein rnfC [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887634|gb|EAA24712.1| Electron transport complex protein rnfC [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 279

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 114/330 (34%), Gaps = 65/330 (19%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           +++N  E EP    D  +M   P +++EG  I    +     ++ +        ES++ A
Sbjct: 1   MILNGAECEPYLNSDNRLMLENPKSIVEGIKIIKKILNVPDVYVGIEDNKPEAIESMRKA 60

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
            +              G    I +      Y  G E  L++S+  ++         P+ V
Sbjct: 61  TE------------GTG----INIVPLKTKYPQGGEKQLIKSILDRQV---PSGQLPSAV 101

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESM 258
           G+      V N  + A +   +  G               K+ ++SG  +  P  ++ ++
Sbjct: 102 GV-----VVQNTGTAAAIYEAVVNG----------KPLIEKVVTVSGKAIKNPKNLKVAI 146

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
              F  ++  HCG      + +  ++ GG  +    A     A +            GT+
Sbjct: 147 GTPFSYIL-DHCG---INREEMARLVMGGPMMGL--AQMTEDATV----------IKGTS 190

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR--VMERLVKGIAQKREID 376
            ++ +                YK +SC  C+ C       +   + +RL      +  + 
Sbjct: 191 GLLALTNEE---------MRPYKTKSCISCSKCVSACPMGLAPLMFDRLAAAKEYEEMV- 240

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
            ++ +   IE  + CA    A  P+   IK
Sbjct: 241 -VHNLMDCIECGS-CAYICPANRPLAESIK 268


>gi|218782807|ref|YP_002434125.1| respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764191|gb|ACL06657.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfatibacillum alkenivorans AK-01]
          Length = 448

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 99/298 (33%), Gaps = 48/298 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          +   +++N    EP  C D  +M      +I+G  +   A+GA 
Sbjct: 22  FPTHVK-------IDAKADTVLINGASCEPLLCSDIHLMETRSDDIIKGLGLVMDAVGAE 74

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ +       L+  V +    GL G         +I V      Y  G+E  L+
Sbjct: 75  KGMIGIKAKHQNAVAILEQKVADA---GLTGGR-------NISVFKMKDFYPGGDEHVLV 124

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G +  P  +   P  VG+      V+N ES+  +   +            +     
Sbjct: 125 NEATG-RIVP--QGGIPLEVGV-----VVSNSESVFNMSQAME-----------DKPVTH 165

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P  V   +      +++   G  R        VI GG  +       + 
Sbjct: 166 RTLNVAGEVMKPIVVRVPVGTPVSHVLKLAGGVRRPDGK----VIDGGPMMG----RVLD 217

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                +      G  +  A   V+      I  + R++      +C QC+ C +    
Sbjct: 218 DPEKAFVTKTTSGLIVLPAEHNVIRGKVTDINQLMRVTRL----ACCQCSLCTDLCPR 271


>gi|118602191|ref|YP_903406.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567130|gb|ABL01935.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 497

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 119/355 (33%), Gaps = 81/355 (22%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +I+ ++ SG+ G GGAGF T +K   + +      H L++N  E EPG   D  +M+  P
Sbjct: 126 MIDCIQKSGIVGLGGAGFPTHVKLGKIKQC-----HTLIINGTECEPGVMCDNALMQFYP 180

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +I G  I  +  GA  A I +  +     ++L                    ++  I 
Sbjct: 181 REIIRGVEILLYICGAERAIIAIEDDKQVAYQAL----------------LMFNHNDRIS 224

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           ++  +  Y  G E  L+++L G +        F  + G+        NV +   V     
Sbjct: 225 INQISTKYTSGAEKLLIKALLGVEI---STGGFAVDKGI-----VCQNVATTKAV----- 271

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                +          +++ +++G    P   E  +  +F+ LI                
Sbjct: 272 -----FDAVVDHKPLVSRIVTVTGSGVKPNNFEVRLGASFESLI---------------- 310

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
                          +          +  G  +G   V  +      I     +S   + 
Sbjct: 311 --------------SIASPSQKAHDYRMGGMMMGVD-VTDIQAPICKITNAIFVSNHIQK 355

Query: 343 ---ESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
              + C +C  C E      + + +    K    ++ ++  Y ++  IE    CA
Sbjct: 356 PAIQECIRCGKCSEVCPVKLLPQQLYWHTKSENIEKALN--YNLADCIE----CA 404


>gi|289208953|ref|YP_003461019.1| electron transporter subunit C [Thioalkalivibrio sp. K90mix]
 gi|288944584|gb|ADC72283.1| electron transport complex, RnfABCDGE type, C subunit
           [Thioalkalivibrio sp. K90mix]
          Length = 541

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 91/289 (31%), Gaps = 37/289 (12%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
             ++A G+ G GGA F T +K   +      R H LVVN  E EP    D  ++R  P  
Sbjct: 130 QRLRAGGIVGLGGAAFPTAVK---LNPRAGQRIHTLVVNGAECEPYISADDMLLRTAPEA 186

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164
           + EG  I +  +G       V         S             L           I + 
Sbjct: 187 VFEGIRITARLLGVERVLFAVEDNMPEAMRS-------------LTETLPPELRDLIELV 233

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
                Y  G E  L++ L G++         PA++G+       +N  +   +   + +G
Sbjct: 234 SVPSIYPTGGERQLIKVLTGQEV---PSGGLPADLGM-----VCHNPGTFKAICDTVIQG 285

Query: 225 ASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI 284
               S        G         V +P  VE  +   F ++IE   GG   G D L   +
Sbjct: 286 RPLLSRIVTVTGPG---------VKHPRNVEALLGTPFADVIE-AAGGYAEGVDRL---V 332

Query: 285 PGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
            GG  +           I   + L             VM        A 
Sbjct: 333 MGGPMMGFAVHDDSIPVIKATNCLLATRPQDTPDPGPVMPCIRCAECAA 381


>gi|85713242|ref|ZP_01044268.1| electron transport complex protein RnfC [Idiomarina baltica OS145]
 gi|85692937|gb|EAQ30909.1| electron transport complex protein RnfC [Idiomarina baltica OS145]
          Length = 624

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 98/318 (30%), Gaps = 67/318 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K             YL++N  E EP  C D  +MR     ++ G  I ++  G  
Sbjct: 153 FPTSQKL-----AQQKPVSYLIINGVECEPYICADDRLMREHARDIVLGMRILAYITGTD 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              + +        +S++AA+ E                 DI +      Y  G E  L+
Sbjct: 208 KTLLAIEDNKPEAIDSMRAAIAE---------------YDDIELRIVPTKYPSGGEKQLI 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G +         P  +G+      + NV +   V   +            +     
Sbjct: 253 QLLTGHEV---PSKQLPIEMGI-----IMQNVGTAFAVKEAVID----------DKPLIE 294

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  +  P  V   +    D L+E          +    VI GG  +        
Sbjct: 295 RVVTLTGECIEQPGNVWSPLGTPVDALLEYAG----FKPEQQQRVIMGGPMMGF------ 344

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI-IKAIWRLSVFYKHESCGQCTPCREGTGW 357
                           L   AV V+  +  I + +   L       +C +C  C E    
Sbjct: 345 ---------------TLPITAVPVIKTTNCILVPSTRELPPPGDEMACIRCGACAEVCPA 389

Query: 358 MM--RVMERLVKGIAQKR 373
            +  + ++ L K      
Sbjct: 390 TLQPQQLQWLAKAKDYPA 407


>gi|313681398|ref|YP_004059136.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154258|gb|ADR32936.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 678

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGW 357
              ++Y+      + +G   V + +   D+++     +  Y+   E+CG+C P R G   
Sbjct: 30  NLPLEYNEHAHSKAFIGWDGVALFNPDVDVVRLATEYAAQYQVYSEACGRCAPGRWGGRI 89

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  +++++ +G     +++ L EVS+ ++  + C +G     P+  L+ +F     + I+
Sbjct: 90  LYDLLDKIARGEGSVSDMEHLKEVSRTMQETSKCEIGKTVPNPLLDLMTHFESDFMDCIN 149

Query: 418 QYH 420
              
Sbjct: 150 NQK 152


>gi|296126764|ref|YP_003634016.1| electron transport complex, RnfABCDGE type, C subunit [Brachyspira
           murdochii DSM 12563]
 gi|296018580|gb|ADG71817.1| electron transport complex, RnfABCDGE type, C subunit [Brachyspira
           murdochii DSM 12563]
          Length = 435

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 94/265 (35%), Gaps = 39/265 (14%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +      +    + +  +++A+G+ G GGA F T +K     K   D    LV+N  E E
Sbjct: 111 YYENSNYMSLSAEEMSKKIQAAGIVGMGGATFPTNVKVDGAAKGGCD---TLVINGVECE 167

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC-AFIYVRGEFIRERESLQAAVDECYASG 147
           P    D  +M      L +G  I    I +     I +     +  E             
Sbjct: 168 PYITSDYRLMIEYTQDLFKGIEILRKIIPSVKRTVIGIENNKPKAIE------------- 214

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                +K+G + ++ V      Y  G E  L+++  G +  P  K   P +VG+      
Sbjct: 215 ---EMTKIGKEYNVEVMPLRLRYPQGAEKMLIDATTG-RVVPVSK--LPMDVGV-----L 263

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           V NV ++  +          Y    ++     +L ++SG  +     V   +      ++
Sbjct: 264 VVNVATLYAI----------YEAVAKDKPLIERLVTVSGDAIKEHKNVWLPLGTPISHVV 313

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVP 291
           E+  G        L      G+SVP
Sbjct: 314 EECGGITAENVLILAGGPMMGTSVP 338


>gi|288940904|ref|YP_003443144.1| RnfABCDGE type electron transport complex subunit C [Allochromatium
           vinosum DSM 180]
 gi|288896276|gb|ADC62112.1| electron transport complex, RnfABCDGE type, C subunit
           [Allochromatium vinosum DSM 180]
          Length = 461

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 66/321 (20%), Positives = 104/321 (32%), Gaps = 61/321 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     II  V+ +GL G GG  F + +K   M        H ++VN  E EP    D  
Sbjct: 131 QMNVKDIIQAVQDAGLVGLGGGAFPSHVK---MQPPAGRVIHTVLVNGCECEPYLTCDHR 187

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           IM  +   LI G  IA  A  A  A I V    +     L+A               +L 
Sbjct: 188 IMLEQTENLIRGIRIALRATRAERAIIGVEDNKLDAVSHLRA---------------RLP 232

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
             + I V      Y  G E  L+ +L   +         PA+VG+      V NV ++A 
Sbjct: 233 KHLPITVEAVRTKYPQGAEKMLITALLDAEV---PAGGLPADVGV-----AVFNVGTLAQ 284

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +  ++ RG               ++ ++SG  V  P      +      L+++       
Sbjct: 285 MGELVPRG----------QGLIERVVTVSGPAVKNPGNFLVPIGTPVRFLLDQVG----- 329

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  VI GG  +    A       +              + V+ ++     +    R
Sbjct: 330 FKGPLGQVILGGPMMGMAVAS--LDVPVTKS----------VSGVVALEPEDPAL--ARR 375

Query: 336 LSVFYKHESCGQCTPCREGTG 356
                    C +C  C     
Sbjct: 376 QVYP-----CIKCGECLRACP 391


>gi|168259651|ref|ZP_02681624.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205350789|gb|EDZ37420.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 451

 Score = 97.0 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPLLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----AVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|126667559|ref|ZP_01738529.1| electron transport complex protein RnfC [Marinobacter sp. ELB17]
 gi|126627985|gb|EAZ98612.1| electron transport complex protein RnfC [Marinobacter sp. ELB17]
          Length = 636

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 103/330 (31%), Gaps = 68/330 (20%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  ++++       ++  ++ +G+ G GGAGF T +K         D    L++N  E E
Sbjct: 119 YRKLERV------QVLALIRQAGIVGLGGAGFPTNIKLRPSVDRKVD---TLILNGAECE 169

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   MR +   ++ G  I ++ +      I +         +L+ A +       
Sbjct: 170 PYITADDMTMREKADQMMAGLRIMAWLLRPARVVIGIEENKPEAIAALRQAAEGSKT--- 226

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                         +      Y  G E  L++ L G++         PA++G+       
Sbjct: 227 -------------EIAVIPTIYPSGGEKQLIQILTGQEV---PSGGIPADIGV-----MC 265

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEK 268
            N+ +   V   + +G    S             +    +  P   E  +      L+  
Sbjct: 266 QNIGTAVAVADAILQGKPLISRVMT---------ATGEALAEPGNFEVLVGTPARHLL-- 314

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
            C G+      +  ++ GG  +                        L    + ++  S  
Sbjct: 315 TCAGV--DKQRMSRLVLGGPMMGY---------------------TLPNTDIPLIKTSNC 351

Query: 329 IIKA-IWRLSVFYKHESCGQCTPCREGTGW 357
           +I A    L      + C +C  C E    
Sbjct: 352 VIAASASELPAPAPEQPCIRCGQCAEACPM 381


>gi|315650909|ref|ZP_07903950.1| electron transport protein [Eubacterium saburreum DSM 3986]
 gi|315486823|gb|EFU77164.1| electron transport protein [Eubacterium saburreum DSM 3986]
          Length = 449

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 90/258 (34%), Gaps = 38/258 (14%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           K ++         V+ SGL G GGAGF T +K +F           LVVNA E EP    
Sbjct: 88  KYVKLSGQTPKELVEESGLVGLGGAGFPTYIKMNF----DFGGEGILVVNAAECEPILSH 143

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           +   +  EP  LIE   I    + A    I ++    +  + L+  +D            
Sbjct: 144 NIARIEDEPEKLIEAMKIVMETVHAVRGIIGIKKIHEKAIDRLKEVID------------ 191

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
               D  I +H     Y  GEE ALL    G   +P   P              V NVE+
Sbjct: 192 ----DSTISIHELQNIYPMGEERALLRETIGILLEPEKFPS--------DAKAVVLNVET 239

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           +  +   +               + T+  SI  HV      +  +  + + +IEK  G  
Sbjct: 240 LYRLREAVLDKKPLMDKDMTVAGKLTENGSI--HV----FFDIPIGTSVESVIEKAGGIG 293

Query: 274 RGGWDNLLAVIPGGSSVP 291
               +    +I GG    
Sbjct: 294 SEYGE----IIMGGPFTG 307


>gi|226940366|ref|YP_002795440.1| Electron transport complex protein rnfC [Laribacter hongkongensis
           HLHK9]
 gi|226715293|gb|ACO74431.1| Electron transport complex protein rnfC [Laribacter hongkongensis
           HLHK9]
          Length = 440

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 68/333 (20%), Positives = 109/333 (32%), Gaps = 63/333 (18%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L+     + + V+A+GL G GGA F T +K S   +   D    LVVN  E EP    D 
Sbjct: 120 LDWSPVELASAVQATGLVGLGGAAFPTHVKMSPPKEAVLD---TLVVNGCECEPFLTADH 176

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M      L+ G   A  A+G   A I V  +         AA+     +         
Sbjct: 177 RVMIERTAGLMAGIRYAMHAVGVSRALIGVEDDKPEAI----AAIKALLPA--------- 223

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
             D  I        Y  G E  L+ SL   +  P  K P             VNNV ++A
Sbjct: 224 --DRSIGCRVLPTRYPQGAEKMLIHSLLQ-REVPSGKLPA-------DVGVVVNNVGTLA 273

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
           ++  +L + A         +  G         V         +     +++ +H G   G
Sbjct: 274 MLGELLPQRAGLIERVVTVSGPG---------VRQAGNYLIPLGTRIGDVL-RHAGMESG 323

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             + +L     G S P L         +            G + ++V    +   +    
Sbjct: 324 EMEVILGGPMMGMSAPSL------DIPVTK----------GMSGILVFPVGSLPERH--- 364

Query: 336 LSVFYKHESCGQCTPCREGTGWMMR--VMERLV 366
                  + C +C  C +     +   ++ RL 
Sbjct: 365 ------RQPCIRCGQCIDACPMGLNPSLLGRLA 391


>gi|158321412|ref|YP_001513919.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Alkaliphilus oremlandii OhILAs]
 gi|158141611|gb|ABW19923.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alkaliphilus oremlandii OhILAs]
          Length = 442

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 100/303 (33%), Gaps = 54/303 (17%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          +  Y+++N  E EP    D+ +M   P  +I+G   A   +GA 
Sbjct: 20  FPTHVKLQ-------GKAEYILLNGAECEPLLRVDQQLMELFPDAVIKGFEAAGRVVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++ +  +    L+  + E   +G             + V      Y  G+E  L+
Sbjct: 73  KAIIGIKEKHGKVISILKDRIQELKVAGF------------VEVKELPDIYPAGDEQVLV 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L G+      +   P +VG       V N E+   +   +                  
Sbjct: 121 YELTGRVV---PEAGIPIHVG-----CVVVNSETALNIYNAMN-----------GQPVTQ 161

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V    TV+  +     ++++         +    AVI GG  +  +      
Sbjct: 162 KYITVTGDVPKALTVKVPVGTPILDVLKLSGIEDFENY----AVIDGGPMMGPV-----M 212

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             +  Y               +++ +  ++IK         K  +   C  CR  T    
Sbjct: 213 DRLDGYVT-------KKNKGFVILKKEHNLIKRKSTTLEQAKRVNKSACEQCRMCTDLCP 265

Query: 360 RVM 362
           R +
Sbjct: 266 RYL 268


>gi|289825954|ref|ZP_06545113.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 442

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 25  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 77

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 78  EGVIALKEKYRRAID----ALSPLLPAG-------------IRLHILPDVYPAGDEVLTI 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 121 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 162

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 163 RTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDNP----GFINGGPMMGGLITS--L 216

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 217 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 266

Query: 357 W 357
            
Sbjct: 267 R 267


>gi|16760985|ref|NP_456602.1| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29141319|ref|NP_804661.1| ferredoxin [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052538|ref|ZP_03345416.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213418914|ref|ZP_03351980.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213425584|ref|ZP_03358334.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
 gi|213649054|ref|ZP_03379107.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|213850296|ref|ZP_03381194.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|25513185|pir||AH0761 probable ferredoxin pduS [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503283|emb|CAD02414.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136946|gb|AAO68510.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 442

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 25  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 77

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 78  EGVIALKEKYRRAID----ALSPLLPAG-------------IRLHILPDVYPAGDEVLTI 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 121 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 162

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 163 RTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDNP----GFINGGPMMGGLITS--L 216

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 217 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 266

Query: 357 W 357
            
Sbjct: 267 R 267


>gi|152990042|ref|YP_001355764.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Nitratiruptor sp. SB155-2]
 gi|151421903|dbj|BAF69407.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Nitratiruptor sp. SB155-2]
          Length = 680

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCR 352
           A       + Y+   +  + +G A + +M    D++K     +  Y+   E+CG+C P R
Sbjct: 25  AESAFNFPVQYNTDIDSKAFIGWAGIALMSDDVDVVKLATEYAKQYQVYSEACGRCAPGR 84

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            G   +  + +++ +G  +K +++ L EVSK +   + C +G     P+  ++++F   I
Sbjct: 85  WGGRILYDLFDKIARGEGEKSDVEHLKEVSKTMMETSKCEIGRTVPKPLLDILEHFSDEI 144

Query: 413 EERIDQYH 420
           ++ I    
Sbjct: 145 DDLIQNKR 152


>gi|167769748|ref|ZP_02441801.1| hypothetical protein ANACOL_01082 [Anaerotruncus colihominis DSM
           17241]
 gi|167668109|gb|EDS12239.1| hypothetical protein ANACOL_01082 [Anaerotruncus colihominis DSM
           17241]
          Length = 437

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 96/324 (29%), Gaps = 67/324 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +            ++VN  E EP    D+ +M      ++EG  +     GA 
Sbjct: 20  FPTHVKINCQA-------GTVIVNGAECEPLLRVDQQVMELYAAEVVEGLRLVMEQTGAK 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++  +    ++L AA++                   + +H     Y  G+E  ++
Sbjct: 73  EGVIALKKHYEGAVKALGAAIEPFGQ---------------LRLHLLREYYPAGDEQQIV 117

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+          P +VG       V N  ++  V                      
Sbjct: 118 YEVTGRVV---PTGGLPLDVG-----AVVCNASTLLNVADAAA-----------GKKVVE 158

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  ++ G V  P T +  + I+  EL+E   G            I GG  +  +      
Sbjct: 159 KYVTVGGAVRTPRTFKVPVGISCRELLEAAGGTAEP-----CRYIIGGPCMGRVVDDP-- 211

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR-LSVFYKHESCGQCTPCREGTGWM 358
              +             T   +       + K     L++      C QC+ C +     
Sbjct: 212 DVPVTKT----------TGGFLAFPVDHPLWKLREETLNMQLIRSVCCQCSMCTQMCPRN 261

Query: 359 --------MRVMERLVKGIAQKRE 374
                    + M  + +G     +
Sbjct: 262 ALGLNVQPHKAMRTIAQGTDLLGD 285


>gi|16800175|ref|NP_470443.1| hypothetical protein lin1106 [Listeria innocua Clip11262]
 gi|16413565|emb|CAC96337.1| lin1106 [Listeria innocua Clip11262]
          Length = 454

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 120/324 (37%), Gaps = 55/324 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 1   MSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A I  +  +  E  +L++A+ E  A            
Sbjct: 54  MRNHAVETIKAIEMVKNQVGAEFAVIATKRYYTEEIAALRSAITELNA------------ 101

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 102 --SVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              ++  A              K  +++G V  P  ++  +   F+  +    G     +
Sbjct: 152 FHAIQDDAPVIR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEY 201

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG  +  L              + E      T+ +IV + +  + K  ++  
Sbjct: 202 LFL----DGGPMMGKLNDQ---------STIAEKVVTKTTSGLIVAEDTGYLHKLHYQTV 248

Query: 338 VFYKHES---CGQCTPCREGTGWM 358
               +E+   C QC+ C +     
Sbjct: 249 EQIFNETKSACIQCSLCSDLCPRQ 272


>gi|213616359|ref|ZP_03372185.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 356

 Score = 96.6 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 25  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 77

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 78  EGVIALKEKYRRAID----ALSPLLPAG-------------IRLHILPDVYPAGDEVLTI 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 121 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 162

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 163 RTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDNP----GFINGGPMMGGLITS--L 216

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 217 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 266

Query: 357 W 357
            
Sbjct: 267 R 267


>gi|213024342|ref|ZP_03338789.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 344

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 25  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 77

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 78  EGVIALKEKYRRAID----ALSPLLPAG-------------IRLHILPDVYPAGDEVLTI 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 121 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 162

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 163 RTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDNP----GFINGGPMMGGLITS--L 216

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 217 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 266

Query: 357 W 357
            
Sbjct: 267 R 267


>gi|331083821|ref|ZP_08332930.1| hypothetical protein HMPREF0992_01854 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403246|gb|EGG82806.1| hypothetical protein HMPREF0992_01854 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 440

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 97/273 (35%), Gaps = 41/273 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  +K +G+ G GGAGF T +K S       D+  Y++VN  E EP    D  
Sbjct: 118 ELTKEEIIGRIKDAGVVGMGGAGFPTHVKLS---PKEPDKIEYVLVNGAECEPYLTSDYR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M  +P  +I G             +I +        E L   V +              
Sbjct: 175 RMLEQPDWIIGGLKCILKLFDHAKGYICIEDNKPDCIEKLTELVKD-------------- 220

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            +  I V      Y  G E  L+ ++ G++    +    PA+ G       V+N++++  
Sbjct: 221 -EPRIEVAPLKTKYPQGAERCLIAAVSGREINSSM---LPADAG-----CVVDNIDTVCA 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   + +G               ++ +++G  V  P   +  +  +F EL+E   G    
Sbjct: 272 VYRAVMKGEPVMD----------RIVTVTGDAVAEPENFKVRLGTSFAELLEAAGG---- 317

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
                  +I GG  +           +     L
Sbjct: 318 LKTPAKKIISGGPMMGFAMFDYHVPVVKTSSAL 350


>gi|110834472|ref|YP_693331.1| electron transport complex protein RnfC [Alcanivorax borkumensis
           SK2]
 gi|110647583|emb|CAL17059.1| electron transport complex protein rnfC [Alcanivorax borkumensis
           SK2]
          Length = 991

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 108/329 (32%), Gaps = 64/329 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             V    EK    +++ ++ +G+ G GGAGF T +K   +      R   L++NA E EP
Sbjct: 143 QGVTDFTEKSPAELVDIIRHAGIAGMGGAGFPTSIK---VNLGDHQRVEQLIINAVECEP 199

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +MR     ++ G  I  + +      I +         +++ A   C      
Sbjct: 200 YITADDRLMRERAEQIVTGIHILQYLLNPRRTLIGIEDNKPEAISAIKRACKGC------ 253

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     DI V      Y  G E  L++ L GK+         PA VG+        
Sbjct: 254 ----------DIEVRVVPTKYPSGGEKQLIQLLTGKEV---ASGQLPAQVGV-----VCQ 295

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   +   +  G    S          ++ +++G  V+ P   E  +     +L+  
Sbjct: 296 NVGTAYAIKRAVCDGEPLIS----------RVTTLTGDGVSQPGNYEVLLGTPVRDLL-A 344

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
           +          L   + GG  +                        L   AV V+  +  
Sbjct: 345 YGNLAGLEIGRL---VMGGPMMGF---------------------TLHNPAVPVVKTTNC 380

Query: 329 IIKA-IWRLSVFYKHESCGQCTPCREGTG 356
           II A    L      + C +C  C E   
Sbjct: 381 IIAASPEELPEPPPEQPCIRCGSCAEVCP 409


>gi|332289788|ref|YP_004420640.1| electron transport complex protein RnfC [Gallibacterium anatis
           UMN179]
 gi|330432684|gb|AEC17743.1| electron transport complex protein RnfC [Gallibacterium anatis
           UMN179]
          Length = 816

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 57/379 (15%), Positives = 122/379 (32%), Gaps = 71/379 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             ++  L    + ++ ++  +G+ G GGA F T  K         ++   L++N  E EP
Sbjct: 124 QPIEDFLTVPPEQLLQKIYQAGIAGLGGAVFPTASK----IASAENKVKLLIINGAECEP 179

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +MR     ++EG  I  + +      + +        E++Q A+         
Sbjct: 180 YITCDDRLMRDRSLDILEGIRILRYILRPQKVVLAIEDNKAEAIEAMQQALSGAN----- 234

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     DI +      Y  G    L++ L G +          + +G+      +N
Sbjct: 235 ----------DIEIRVIPTKYPSGAAKQLIQVLTGLEV---PNNGRSSQIGV-----LMN 276

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   V   +                  ++ +++G  +  P  V   +      L+++
Sbjct: 277 NVATAFAVKKAIIDDEPLI----------ERVVTLTGDKIPQPRNVWARIGTPIYHLLQQ 326

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAG---------QMRGAIMDY---DGLKEMGSGLG 316
                   +D+   V  GG  +  +                A   +      +E      
Sbjct: 327 AG----YQYDDRFPVFMGGPMMGFILPNLNSPVTKVTNCLIAPDHFEYQPPPQERNCIRC 382

Query: 317 TAAVIVMDRSTDIIKAI-WRLSVFYKHE-----------SCGQCTPCREGTGWMMRVMER 364
           +A           IK +  +L  F + E            C +C  C       + +++ 
Sbjct: 383 SA-----CSDHCPIKLMPQQLYWFARSEDHEKSEQYNLKDCIECGVCAYVCPSNIPLIQY 437

Query: 365 LVKGIAQKREIDLLYEVSK 383
             +  A+  E+ L  ++++
Sbjct: 438 FRQEKAKIAELKLKAKLAE 456


>gi|295109271|emb|CBL23224.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Ruminococcus obeum A2-162]
          Length = 442

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 98/286 (34%), Gaps = 53/286 (18%)

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   +++N  E EP     R ++    + +++   +    +GA  A I ++  +++  +
Sbjct: 31  DKADTILLNCAECEPLLKLHRQLLEKHAYEIMKTFHMVMETVGASQAIIGIKKSYVQTIK 90

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +LQ  ++E                  + +H     Y  G+E  L+    G+  +P     
Sbjct: 91  ALQQNIEEFPG---------------LKIHLLDEVYPMGDEVVLIYEATGRVCRP---GG 132

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            P   G+      V NVE+I  V          Y     +     K  S+   V  P TV
Sbjct: 133 LPIEQGV-----IVFNVETIYNV----------YQAVEAQKPVTEKYVSVVAEVGNPVTV 177

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           +  +  T DE++ +                 GG  +  +  G                  
Sbjct: 178 KVPLGCTLDEVVAQAGDITTKDP----VYFVGGPMMGRIGNGSDPVT------------- 220

Query: 315 LGTAAVIVMDRSTDII-KAIWRLSVFYKHES--CGQCTPCREGTGW 357
             T AV+V+ R   I+ K     ++  K  +  C QC  C +    
Sbjct: 221 KTTNAVLVLPRDHQIVMKKQRTSAIDLKRAASICCQCNTCTDLCPR 266


>gi|91793220|ref|YP_562871.1| electron transport complex protein RnfC [Shewanella denitrificans
           OS217]
 gi|91715222|gb|ABE55148.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           denitrificans OS217]
          Length = 731

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 111/324 (34%), Gaps = 55/324 (16%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E     I+  +K +G+ G GGA F + +K +      +     +++N  E EP    D  
Sbjct: 128 ELSNSQILARIKDAGIAGMGGAAFPSHIKLN-----PASEIDLVIINGVECEPYITADDC 182

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +IEG  I    +      I +     +   +++AA+ +    GLL       
Sbjct: 183 LMREYNEQIIEGIAIIHALLTPERIIIAIEDNKPQAASAMKAAIGQAETCGLLVPGC--- 239

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + V      Y  G E  L++ + GK+         PA +G+      V+NV +   
Sbjct: 240 ----VRVTQIPTKYPSGGEKQLIQIITGKEV---PSGTIPAQLGI-----VVHNVGTAFA 287

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               +L +I+G  V  P     ++ +  D  +EK       
Sbjct: 288 IKQAVLDGKPLV----------ERLVTITGERVARPGNYWLAIGMPIDAALEKTG----F 333

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  VI GG  +                 L  +   +      ++  S +       
Sbjct: 334 NPQLQQKVIVGGPMMGY--------------SLPNLAVPVLKGTNCLLAPSDN------E 373

Query: 336 LSVFYKHESCGQCTPCREGTGWMM 359
           ++   + ++C +C  C      ++
Sbjct: 374 IAADAEEKACIRCGECAVACPALL 397


>gi|59711540|ref|YP_204316.1| electron transport complex protein RnfC [Vibrio fischeri ES114]
 gi|59479641|gb|AAW85428.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           (Rnf/Rsx reducing system) [Vibrio fischeri ES114]
          Length = 827

 Score = 96.2 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 41/255 (16%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
               +I  ++ SG+ G GGAGF T  K     +    +   L++NA E EP    D  +M
Sbjct: 133 DPIDLIERIRQSGISGMGGAGFPTSRK----IQSGIGKAEMLIINAAECEPYITADDRLM 188

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     +I+G  I    +      I +        ++L  AV +                
Sbjct: 189 REHAEEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAVTD---------------H 233

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            +II+      Y  G    L + + G++           ++G+      V NV ++  + 
Sbjct: 234 DNIIIRVIPTKYPSGGSRQLTKIITGQEVPANG---RSTDIGV-----IVQNVGTVFAIK 285

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +                  ++ +++G+ ++ P  +   +    D L+E          
Sbjct: 286 RAICDAEPLI----------ERIVTLTGNSMSTPGNLWVRLGTCIDYLMELVGYKADKKH 335

Query: 278 DNLLAVIPGGSSVPC 292
                +I GGS +  
Sbjct: 336 PR---IIMGGSLMGF 347


>gi|254428110|ref|ZP_05041817.1| electron transport complex, RnfABCDGE type, C subunit subfamily,
           putative [Alcanivorax sp. DG881]
 gi|196194279|gb|EDX89238.1| electron transport complex, RnfABCDGE type, C subunit subfamily,
           putative [Alcanivorax sp. DG881]
          Length = 986

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 107/329 (32%), Gaps = 64/329 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +    EK    +++ ++ +G+ G GGAGF T +K   +      R   L++NA E EP
Sbjct: 139 QGIADYTEKSPAELVDLIRHAGIAGMGGAGFPTSIK---VNLGDHQRVEQLLINAVECEP 195

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +MR     ++ G  I  + +      I +         +++ A   C      
Sbjct: 196 YITADDRLMRERAEQIVTGIHILQYLLNPRRTLIGIEDNKPEAISAIKRACKGC------ 249

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     DI V      Y  G E  L++ L GK+         PA VG+        
Sbjct: 250 ----------DIEVRVVPTKYPSGGEKQLIQLLTGKEV---ASGQLPAQVGV-----VCQ 291

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV +   +   +  G    S          ++ +++G  V+ P   E  +     +L+  
Sbjct: 292 NVGTAYAIKRAVCDGEPLVS----------RVTTLTGDGVSQPGNYEVLLGTPVRDLL-A 340

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
           H          L   + GG  +                        L    V V+  +  
Sbjct: 341 HGNLAGLDIGRL---VMGGPMMGF---------------------TLHNPGVPVVKTTNC 376

Query: 329 IIKA-IWRLSVFYKHESCGQCTPCREGTG 356
           II A    L      + C +C  C E   
Sbjct: 377 IIAASPEELPEPPPEQPCIRCGSCAEVCP 405


>gi|290894304|ref|ZP_06557270.1| PduS protein [Listeria monocytogenes FSL J2-071]
 gi|290556123|gb|EFD89671.1| PduS protein [Listeria monocytogenes FSL J2-071]
          Length = 454

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 120/324 (37%), Gaps = 55/324 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 1   MSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A I  +  +  E  +L++A+ E               
Sbjct: 54  MRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITEL-------------- 99

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 100 DASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              ++  A              K  +++G V  P  ++  +   F+  +    G     +
Sbjct: 152 FHAIQDDAPVVR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEY 201

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG  +  L              + +      T+ +IV + +  + K  ++  
Sbjct: 202 LFL----DGGPMMGKLNDQ---------STIADKVVTKTTSGLIVAEDTGYLHKLHYQTV 248

Query: 338 VFYKHES---CGQCTPCREGTGWM 358
               +E+   C QC+ C +     
Sbjct: 249 EQIFNETKSACIQCSLCSDLCPRQ 272


>gi|152993803|ref|YP_001359524.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Sulfurovum sp. NBC37-1]
 gi|151425664|dbj|BAF73167.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Sulfurovum sp. NBC37-1]
          Length = 669

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTG 356
                 Y G K   + +G   V + D + D ++   + +  Y+   E+CG+C P R G  
Sbjct: 29  FKLPETYHGEKNSKAFIGWDGVAIFDENIDAVELASKYAAQYQEYSEACGRCAPGRWGGR 88

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            +  +++++ +G     +I  L E+SK +   + C +G     PI  L++ ++   +  I
Sbjct: 89  ILYDLLDKIARGEGSHDDIAHLKEISKTMMATSKCEIGKTVPKPILDLMEYYKDQFDTCI 148

Query: 417 D 417
           D
Sbjct: 149 D 149


>gi|197334471|ref|YP_002155696.1| electron transport complex protein RnfC [Vibrio fischeri MJ11]
 gi|197315961|gb|ACH65408.1| electron transport complex protein RnfC [Vibrio fischeri MJ11]
          Length = 784

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 41/255 (16%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
               +I  ++ SG+ G GGAGF T  K     +    +   L++NA E EP    D  +M
Sbjct: 133 DPIDLIERIRQSGISGMGGAGFPTSRK----IQSGIGKAEMLIINAAECEPYITADDRLM 188

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     +I+G  I    +      I +        ++L  AV +                
Sbjct: 189 REHAEEIIDGIKILQHILTPKVCIIAIEDNKPEAVKALNQAVTD---------------H 233

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            +II+      Y  G    L + + G++           ++G+      V NV ++  + 
Sbjct: 234 DNIIIRVIPTKYPSGGSRQLTKIITGQEVPANG---RSTDIGV-----IVQNVGTVFAIK 285

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +                  ++ +++G+ ++ P  +   +    D L+E          
Sbjct: 286 RAIYDAEPLI----------ERIVTLTGNSMSTPGNLWVRLGTCIDYLMELVGYKADKKH 335

Query: 278 DNLLAVIPGGSSVPC 292
                +I GGS +  
Sbjct: 336 PR---IIMGGSLMGF 347


>gi|16803182|ref|NP_464667.1| hypothetical protein lmo1142 [Listeria monocytogenes EGD-e]
 gi|16410558|emb|CAC99220.1| lmo1142 [Listeria monocytogenes EGD-e]
          Length = 454

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 120/324 (37%), Gaps = 55/324 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 1   MSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 53

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A I  +  +  E  +L++A+ E               
Sbjct: 54  MRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITEL-------------- 99

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 100 DASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 151

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              ++  A              K  +++G V  P  ++  +   F+  +    G     +
Sbjct: 152 FHAIQDDAPVVR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEY 201

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG  +  L              + +      T+ +IV + +  + K  ++  
Sbjct: 202 LFL----DGGPMMGKLNDQ---------STIADKVVTKTTSGLIVAEDTGYLHKLHYQTV 248

Query: 338 VFYKHES---CGQCTPCREGTGWM 358
               +E+   C QC+ C +     
Sbjct: 249 EQIFNETKSACIQCSLCSDLCPRQ 272


>gi|283768913|ref|ZP_06341823.1| electron transport complex, RnfABCDGE type, C subunit [Bulleidia
           extructa W1219]
 gi|283104466|gb|EFC05840.1| electron transport complex, RnfABCDGE type, C subunit [Bulleidia
           extructa W1219]
          Length = 438

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/360 (19%), Positives = 122/360 (33%), Gaps = 76/360 (21%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            R+ +++ VK +G+ G GGAGF T +K+  +     D    L++NA E EP    D   M
Sbjct: 119 SREELLDFVKNAGIMGLGGAGFPTYVKYMKV-----DGIDMLIINAVECEPFLTADYKAM 173

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
                +   G +       A  A + ++ +       L+ A              + G  
Sbjct: 174 EENMDSFKLGVLALWKLSAAPKAVVAIKEDKKEMIAKLEEAF------------VESG-- 219

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             + +      Y  G E  L   L  K          P+ +GL      VNN  +   + 
Sbjct: 220 --VEIKAVPDMYPMGYERTLAYQLTKKNYD-----RLPSEIGL-----IVNNANTAIALG 267

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             L  G               K  ++SG  V  P TV   +     EL+ K  GG++ G 
Sbjct: 268 KALVTGMPITH----------KYVTVSGDAVKKPQTVYVPVGTISGELL-KAVGGVKEGI 316

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
           +++L +  G      +P  Q                         + +ST+ +  +  + 
Sbjct: 317 EDILMINGGPMMGRAIPNNQW-----------------------SISQSTNGVTVMKHIK 353

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV--SKNIEGRTICALGD 395
                 +C +C  C +     +  +   +    +  + D L ++  +  IE    C L  
Sbjct: 354 EEAI--NCLRCGACVDHCPMGLEPVR--IADEHKVVDYDHLVKLRVTDCIE----CGLCT 405


>gi|168238788|ref|ZP_02663846.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737944|ref|YP_002115086.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194713446|gb|ACF92667.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288433|gb|EDY27814.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 451

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPQLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|332830208|gb|EGK02836.1| hypothetical protein HMPREF9455_01086 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 428

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/373 (14%), Positives = 110/373 (29%), Gaps = 85/373 (22%)

Query: 19  SLSDSMSRGHWDNVDKILEKGRDW-----------------IINEVKASGLRGRGGAGFS 61
            + +++    +     ++    +                  +I  ++A+G+ G GGA F 
Sbjct: 74  DIREALQADGFMATTIVISNDFEEAEVELPKDNTDLYTSGQLIELIEAAGIVGEGGAQFP 133

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
             +K     K+   + +  ++N  E EP    D  +M      L +G  IA+  + A   
Sbjct: 134 ASLK----YKLEGHKINTFIINGTECEPYLTADYALMAERTEELFKGIGIANRILQADDI 189

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLES 181
            I +  +    ++     + +                    V      Y  G E  L+ S
Sbjct: 190 VITIEEQNKELQKIFSPFLQKAGYKNY-------------RVVVLPNEYPQGGELQLIRS 236

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           + G +  PR + P   ++G+      V+NV +I  +   +       S          + 
Sbjct: 237 VTGIE-LPRSQRPR--DIGV-----IVSNVGTICAMYDAVVNRHPVIS----------RT 278

Query: 242 FSISGHVN-YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            +ISG  +      E  +       I      +         V+ GG  +          
Sbjct: 279 ITISGEESLNEGNFEVKIGTPVGHFISLFGLSVTN-----KTVVLGGPMMGRGITDWNVP 333

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                          G++ V+   +               K  +C  C  C +     + 
Sbjct: 334 V------------SKGSSGVLFFRKER------------IKRSNCISCGYCVDVCPMHLM 369

Query: 361 VM---ERLVKGIA 370
            M   E   +G  
Sbjct: 370 PMKFEENFRRGKY 382


>gi|194442756|ref|YP_002041320.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401419|gb|ACF61641.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 451

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQTARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+      G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPLLPDG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAIEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLHEVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|238789886|ref|ZP_04633667.1| Cobalamin reductase [Yersinia frederiksenii ATCC 33641]
 gi|238722082|gb|EEQ13741.1| Cobalamin reductase [Yersinia frederiksenii ATCC 33641]
          Length = 459

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 96/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     +         +VNA E EP    D+ ++  +   L+ G +    A GA 
Sbjct: 41  FPTAVKLQAQAE-------IFLVNAAECEPMLKVDQQLIPRQAARLVRGVLYGMTATGAR 93

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++        AA+     +              I +H     Y  G+E   +
Sbjct: 94  EGIIALKAKYTEAI----AALTPLLPA-------------QIRLHILPDVYPAGDEVITI 136

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P ++G+      VNNV+++  V   + +   W            
Sbjct: 137 WLATGRRVPP---AALPISIGV-----VVNNVQTLLNVARAVEQ--QWPVTR-------- 178

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   +     E++    G          A I GG  +    A    
Sbjct: 179 RTLTVNGAVARPLTLTVPLGTPLREVLALAGGVTINNP----AYINGGPMMGH--ALHDL 232

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL---SVFYKHESCGQCTPCREGTG 356
              +             T  ++V+     +I    R     +      C QC  C E   
Sbjct: 233 DQPVTKT----------TGGLLVLPADHLLITRRARSDKDVLAIARTVCEQCRMCTELCP 282

Query: 357 W 357
            
Sbjct: 283 R 283


>gi|168466298|ref|ZP_02700168.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631413|gb|EDX49973.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 451

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPLLPAG-------------IRLHILQDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----AVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|238913465|ref|ZP_04657302.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 451

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPQLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLHEVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|224583451|ref|YP_002637249.1| ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224467978|gb|ACN45808.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 451

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 97/280 (34%), Gaps = 54/280 (19%)

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           +VNA E EP    D+ +M  +   L+ G   A  A GA    I ++ ++ R  +    A+
Sbjct: 48  LVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAID----AL 103

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                +G             I +H     Y  G+E   +    G++  P      PA+VG
Sbjct: 104 TPQLPAG-------------IRLHILPDVYPAGDEVLTIWMATGRRVAP---AALPASVG 147

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           +      VNNV+++  +   + +                +  +++G V  P TV   + +
Sbjct: 148 V-----VVNNVQTVLNIARAVEQQFPVTR----------RTLTVNGAVARPLTVTVPVGM 192

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
           +  E++    G            I GG  +  L         +             T  +
Sbjct: 193 SLHEVLALAGGATVDNP----GFINGGPMMGGLITS--LDNPVTKT----------TGGL 236

Query: 321 IVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTGW 357
           +V+ +S  +I+      R  +      C QC  C +    
Sbjct: 237 LVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPR 276


>gi|204928972|ref|ZP_03220115.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321516|gb|EDZ06715.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 451

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPQLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|161613340|ref|YP_001587305.1| hypothetical protein SPAB_01051 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362704|gb|ABX66472.1| hypothetical protein SPAB_01051 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 451

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+      G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPLLPDG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAIEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLHEVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|153809705|ref|ZP_01962373.1| hypothetical protein RUMOBE_00086 [Ruminococcus obeum ATCC 29174]
 gi|149833883|gb|EDM88963.1| hypothetical protein RUMOBE_00086 [Ruminococcus obeum ATCC 29174]
          Length = 451

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 98/286 (34%), Gaps = 53/286 (18%)

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   +++N  E EP     R ++    + +++        +GA  A I ++  +++  +
Sbjct: 40  DKADTILLNCAECEPLLKLHRQLLEKHAYEIMKTFHTVMETVGASQAIIGIKKSYVQTVK 99

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           +LQ  ++E                  + +H     Y  G+E  L+    G+  +P     
Sbjct: 100 ALQQHIEEFPG---------------LKLHLLDEVYPMGDEVVLIYEATGRVCRP---GG 141

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
            P   G+      V NVE+I  V          Y     +     K  S+   V +P TV
Sbjct: 142 LPIEQGV-----IVFNVETIYNV----------YQALESQKPVTEKYVSVVAEVEHPVTV 186

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           +  +  T DE++ +                 GG              +M   G       
Sbjct: 187 KVPLGCTLDEVVAQAGNITTKDP----VYFVGGP-------------MMGRIGNGADPVT 229

Query: 315 LGTAAVIVMDRSTDII-KAIWRLSVFYKHES--CGQCTPCREGTGW 357
             T AV+V+ R   I+ K     ++  K  +  C QC  C +    
Sbjct: 230 KTTNAVLVLPRDHQIVMKKQRTSAIDLKRAASICCQCNTCTDLCPR 275


>gi|198245042|ref|YP_002216138.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197939558|gb|ACH76891.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326623884|gb|EGE30229.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 451

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+      G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPLLPDG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVVRPLTVTVPVGMSLHEVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|300857119|ref|YP_003782103.1| putative RnfC related NADH dehydrogenase [Clostridium ljungdahlii
           DSM 13528]
 gi|300437234|gb|ADK17001.1| putative RnfC related NADH dehydrogenase [Clostridium ljungdahlii
           DSM 13528]
          Length = 442

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 95/285 (33%), Gaps = 47/285 (16%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y+++N  E EP    D+ +MR  P  +I+G   A   +GA+ A I ++G+       L+
Sbjct: 31  EYILLNGAECEPLLRVDQQLMRMFPDEIIKGFESAGKLVGANKALIGIKGKHKEVISILR 90

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
             ++E                  I V      Y  G+E  L+  L G+      +   P 
Sbjct: 91  NRIEELQVGDF------------IEVKEIPDIYPAGDEQVLVHELTGRVV---PEMGIPI 135

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           +VG       V N E+   +              G       K  +++G +    TV+  
Sbjct: 136 SVG-----CVVVNAETALNIYHA---------SMGVP--VTEKYITVAGDIPKRLTVKVP 179

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +     ++++    GI    D    VI GG  +  + +                      
Sbjct: 180 VGTPVIDVLKL--SGIENFDD--YTVIDGGPMMGPVKSDVDGYVTKK------------N 223

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
              +++ +   +I+         K  +   C  CR  T    R +
Sbjct: 224 KGFVILKKDHPLIRKKSVSIEQAKRVNRSSCEQCRMCTDMCPRYL 268


>gi|291544451|emb|CBL17560.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           sp. 18P13]
          Length = 426

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 103/342 (30%), Gaps = 59/342 (17%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            R   +  ++ SG  G GGAGF T +K +  PK   D    LV+N  E EP    D   M
Sbjct: 114 DRAGFVKAIRESGAVGLGGAGFPTHIKLN--PKTPID---TLVINGAECEPYITSDYRQM 168

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
              P  +I G  +    +    A I +     +  + L   V+                 
Sbjct: 169 VEGPEEIINGIKLIMEQLQIPRAKIGIENNKPQAVKVL---VELADKYP----------- 214

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            +I +      Y  G E  ++ +  G+  +   +   P++ G+      V NV ++A + 
Sbjct: 215 -EIEIAPLPTTYPQGAEKVMIYNTTGRIIK---EGQLPSDTGV-----IVLNVSTVAFLW 265

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              + G               +  ++ G  V  PC +   +  +  +++       +   
Sbjct: 266 RYAQTGMPLV----------ERRLTVDGDTVKKPCNLIVPIGTSVADVLAYA----QCDM 311

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
           D +  +I GG  +               + +  +           +     +     RL 
Sbjct: 312 DKVRMLIGGGPMMGMCLYTADTPIGKPNNAILALEHYQENPETACIRCGRCMHACPMRLM 371

Query: 338 ----------------VFYKHESCGQCTPCREGTGWMMRVME 363
                              K   C  C  C         + E
Sbjct: 372 PTELEKAYRTRDVAALQKLKLSLCMNCGSCTYVCPAGRHLAE 413


>gi|168229366|ref|ZP_02654424.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472885|ref|ZP_03078869.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194459249|gb|EDX48088.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335834|gb|EDZ22598.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 451

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 101/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPQLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLHEVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|218133767|ref|ZP_03462571.1| hypothetical protein BACPEC_01636 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991142|gb|EEC57148.1| hypothetical protein BACPEC_01636 [Bacteroides pectinophilus ATCC
           43243]
          Length = 439

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 96/298 (32%), Gaps = 62/298 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K   +     +   Y++VN  E EP    D   +  EP  ++ G  I        
Sbjct: 140 FPANVK---ITPKDPEAIDYVIVNGAECEPYLTSDYRRLLEEPEKVVMGLKIVLKLFDKA 196

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +          ++ A                  +  I V      Y  G E  L+
Sbjct: 197 QGVIAIEDNKPEAIAVMEKACAG---------------EDRISVKVMKTKYPQGGERFLI 241

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ G++    +    PA+ G       V+NV+++  +      G               
Sbjct: 242 SAVTGREINSSM---LPADAG-----CIVHNVDTVTSIYFACIEGFPLTK---------- 283

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  V  P      + + F +L++   G +          I GG  +    A   
Sbjct: 284 RIVTVTGDGVKEPQNFYVYLGMNFRQLLDAAGGPVGEPEK----YISGGPMMGF--AMYS 337

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
               +            G+++++V+ +  D +K +       K  +C +C  C E   
Sbjct: 338 LDVPV----------VKGSSSLLVLQK--DPVKDL-------KASACIRCGKCGEACP 376


>gi|90579150|ref|ZP_01234960.1| electron transport complex protein RnfC [Vibrio angustum S14]
 gi|90439983|gb|EAS65164.1| electron transport complex protein RnfC [Vibrio angustum S14]
          Length = 858

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 105/323 (32%), Gaps = 65/323 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++    +I  ++ SG+ G GGAGF T  K     +        L++NA E EP    D  
Sbjct: 130 DRDPAELIETIRLSGIAGLGGAGFPTARKL----QGGLGNVDILIINAAECEPYITADDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +IEG  I    I      I +        ++L+  V E              
Sbjct: 186 LMRDYAEEVIEGVRILRHIISPKLTIIGIEDNKPEAIKALEQHVTEAD------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I++      Y  G    L++ L G++           +VG+      + N+ +   
Sbjct: 234 ---NILIRVVPTKYPSGSSKQLVKILTGREV---PSQSRSTSVGV-----IMQNIGTAFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G        V   +      L++K   G + 
Sbjct: 283 IKRAIIDGEPLI----------ERVVTLTGEAFKKRGNVFAMLGTPIAYLLDKF--GYKA 330

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
              +   +I G      LP                          + + + T+ I A  R
Sbjct: 331 DKKHPRVIIGGSLMGFTLPHSN-----------------------VPITKITNCILAPKR 367

Query: 336 --LSVFYKHESCGQCTPCREGTG 356
             L +     +C +C+ C +   
Sbjct: 368 KELPLHTYEMACIRCSACADVCP 390


>gi|317491709|ref|ZP_07950144.1| respiratory-chain NADH dehydrogenase 51 kDa subunit protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920143|gb|EFV41467.1| respiratory-chain NADH dehydrogenase 51 kDa subunit protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 463

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 95/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     +         +VNA E EP    D+ ++  +   L+ G +    A GA 
Sbjct: 46  FPTAVKLQAQAE-------IFLVNAAECEPMLKVDQQLIPRQASRLVRGVLYGMTATGAR 98

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++        AA+     +              I +H     Y  G+E   +
Sbjct: 99  EGIIALKAKYKEAI----AALTPLLPA-------------QIRLHILPDVYPAGDEVITI 141

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P ++G+      VNNV+++  V   + +   W            
Sbjct: 142 WLATGRRVPP---AALPISIGV-----VVNNVQTLLNVARAVEQ--QWPVTR-------- 183

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   +     +++    G          A I GG  +    A    
Sbjct: 184 RTLTVNGAVARPLTLTVPLGTPLRDVLALAGGATVPRP----AYINGGPMMGH--ALHDL 237

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF---YKHESCGQCTPCREGTG 356
              +             T  ++V+     +I    R            C QC  C E   
Sbjct: 238 DQPVTKT----------TGGLLVLPADHLLITRRARSDQDVLAIARTVCEQCRMCTELCP 287

Query: 357 W 357
            
Sbjct: 288 R 288


>gi|313624158|gb|EFR94226.1| PduS type ferredoxin, putative [Listeria innocua FSL J1-023]
          Length = 455

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 122/323 (37%), Gaps = 55/323 (17%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 2   LSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 54

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A I  +  +  E  +L++A+ E               
Sbjct: 55  MRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITEL-------------- 100

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 101 DASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 152

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              ++  A              K  +++G V  P  ++  +   F+  +    G     +
Sbjct: 153 FHAIQDDAPVVR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEY 202

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG          M G + D   + E      T+ +IV + +  + K  ++  
Sbjct: 203 LFL----DGGP---------MMGKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQTV 249

Query: 338 VFYKHES---CGQCTPCREGTGW 357
               +E+   C QC+ C +    
Sbjct: 250 EQIFNETKSACIQCSLCSDLCPR 272


>gi|225374889|ref|ZP_03752110.1| hypothetical protein ROSEINA2194_00512 [Roseburia inulinivorans DSM
           16841]
 gi|225213272|gb|EEG95626.1| hypothetical protein ROSEINA2194_00512 [Roseburia inulinivorans DSM
           16841]
          Length = 464

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 106/347 (30%), Gaps = 66/347 (19%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
           + +    ++ IIN+VK +G+ G GGAGF T +K S       ++  Y++ N  E EP   
Sbjct: 131 EDVTALSKEEIINKVKEAGVVGMGGAGFPTHVKLS---PKEPEKIEYIIANCAECEPYLT 187

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D   M   P  L+ G  I             V          LQ           L  +
Sbjct: 188 ADYRRMLENPEELVAGMKIILQIFDKAKGVFGVENNKPDCIAKLQE----------LTKD 237

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                   + V      Y  G E  L+ ++ G+    ++    PA+ G       V+NVE
Sbjct: 238 EP-----RMEVCPLQTKYPQGGERQLIYAVTGRAINSKM---LPADAG-----CIVDNVE 284

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           +I  +   ++ G    +                  V  P      +   + EL+E   GG
Sbjct: 285 TIIAIYNAVKLGKPVMNRVSTI---------TGDAVANPGNFLYYIGTNYAELVE-AAGG 334

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
            +   +    +I GG  +    +                               + ++  
Sbjct: 335 FKVQPEK---IISGGPMMGF--SMFSLDIPTTKTS-------------------SSLLCL 370

Query: 333 IWRLSVFYKHESCGQCTPCREGTG------WMMRVMERLVKGIAQKR 373
                   +   C  C  C E          + ++ +  V    +K 
Sbjct: 371 AEDEVAKAEPSPCINCGRCVEACPEQLIPSRLAKMADHGVADEFEKW 417


>gi|316931524|ref|YP_004106506.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Rhodopseudomonas palustris DX-1]
 gi|315599238|gb|ADU41773.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Rhodopseudomonas palustris DX-1]
          Length = 666

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 56/122 (45%)

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           ++D    + + +      V D +  ++ A++        +SCG CTPCR GT  +   ++
Sbjct: 36  EFDDGNAIRAFIADRGFFVFDPTVSLVDALYHYLKTAAEQSCGACTPCRVGTVLVRDALD 95

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           ++ +G+     +D +  + + I   ++C LG   A  +   ++ FRP +E  +  +    
Sbjct: 96  QMRRGMDAALTLDDIVMLGEQIRQTSLCGLGQTCAVALLAALREFRPRVERELGSHRPIP 155

Query: 424 FQ 425
            Q
Sbjct: 156 AQ 157


>gi|229828577|ref|ZP_04454646.1| hypothetical protein GCWU000342_00641 [Shuttleworthia satelles DSM
           14600]
 gi|229793171|gb|EEP29285.1| hypothetical protein GCWU000342_00641 [Shuttleworthia satelles DSM
           14600]
          Length = 444

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 106/287 (36%), Gaps = 51/287 (17%)

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            +R   +++N  E EP     R ++      ++      +  +GA  A + V+ E+    
Sbjct: 30  DERADTILLNCAECEPLLSLHRQLLALHTEEILSAFEQVACTVGAERAIVCVKKEYKAAI 89

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
           ++++  ++              G    + +H   G Y  G+E  L+    G+  +P    
Sbjct: 90  QAVEHGLE-------------SGLYPHVSLHLLQGVYPMGDEVVLVYEATGRVIRP---G 133

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
             P   G+      V NVE++  V   L + A              KL ++ G +  P T
Sbjct: 134 GLPIEEGV-----IVFNVETMYNVSRALTQEAPVTK----------KLVTMIGELKEPKT 178

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           +   +  + +E I    G +   +    A++ GG              +M  +G K    
Sbjct: 179 LFLPLGTSLEEAIALAGGPLIQDY----AILVGGP-------------MMGREGRKADPV 221

Query: 314 GLGTAAVIVMDRSTDIIKAIW-RLSVFYKHES--CGQCTPCREGTGW 357
              T AV+V+     +I+ +  ++SV  +  +  C QC  C +    
Sbjct: 222 TRTTNAVLVLPPDHGLIQRMRAKISVDLQRAASICCQCRACTDLCPR 268


>gi|225572236|ref|ZP_03781100.1| hypothetical protein RUMHYD_00530 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040298|gb|EEG50544.1| hypothetical protein RUMHYD_00530 [Blautia hydrogenotrophica DSM
           10507]
          Length = 439

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 114/348 (32%), Gaps = 67/348 (19%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  V  + E  ++ I+  ++  G+ G GGAGF T +K   +     +   Y++VN  E E
Sbjct: 110 YQPVTSLGELTKEEILKRIQEGGVVGMGGAGFPTHVK---LAPKNPESIEYILVNGAECE 166

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   +  E   ++EG  +          +I +          ++  V +      
Sbjct: 167 PYLTSDYRRLLEEGEQVVEGLKVMLALFDNAKGYICIEDNKPDCIRKMEELVKDI----- 221

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                       I V      Y  G E AL+ +  G++    +    PA+VG       V
Sbjct: 222 ----------PRIEVKALMTKYPQGGERALIYATTGREINSSM---LPADVG-----CVV 263

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NV+++  +   +  G               ++ +++G  V  P     S     +EL+E
Sbjct: 264 DNVDTVTAIYKAVMLGRPVID----------RIVTVTGDAVAQPKNFMVSTGTNMNELVE 313

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              G           +I GG  +    +                     +A +  +    
Sbjct: 314 AAGG----FKGQPEKIISGGPMMGF--SMYGLDIPCTKTS---------SAILSFLRDEV 358

Query: 328 DIIKAIWRLSVFYKHESCGQCT--------PCREGTGWMMRVMERLVK 367
             ++    +       +CG+C         P R  T      ME+  +
Sbjct: 359 SHVQETACI-------NCGRCVSVCPGHVIPARLATFAQHGDMEKFQE 399


>gi|319955921|ref|YP_004167184.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Nitratifractor salsuginis DSM 16511]
 gi|319418325|gb|ADV45435.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Nitratifractor salsuginis DSM 16511]
          Length = 670

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 2/131 (1%)

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCR 352
                    +YD  K   + +G   V + D   D ++     +  Y+   E+CG+C P R
Sbjct: 25  EESAFKLPENYDEGKPSKAFIGWDGVAIFDEEIDAVRLATEYAATYQKYSEACGRCAPGR 84

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            G   +  +++++ +G     +++ L EVS+ +   + C +G     PI  L+++++   
Sbjct: 85  WGGRILYDLLDKIARGEGSFADVEHLREVSQTMMLTSKCEIGRTVPKPILDLMEHYKEQF 144

Query: 413 EERIDQYHRCN 423
           +  I +  +  
Sbjct: 145 DTCIAEQRKSP 155


>gi|307942123|ref|ZP_07657474.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4]
 gi|307774409|gb|EFO33619.1| NADH-quinone oxidoreductase subunit f 1 [Roseibium sp. TrichSKD4]
          Length = 77

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/62 (72%), Positives = 54/62 (87%)

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M RVMER+VKG +   EID+L++V+K +EG TICALGDAAAWPIQGLI+NFRPLIE+RID
Sbjct: 1   MWRVMERMVKGESSYEEIDMLFKVTKQVEGHTICALGDAAAWPIQGLIRNFRPLIEQRID 60

Query: 418 QY 419
            Y
Sbjct: 61  DY 62


>gi|89073352|ref|ZP_01159876.1| electron transport complex protein RnfC [Photobacterium sp. SKA34]
 gi|89050839|gb|EAR56313.1| electron transport complex protein RnfC [Photobacterium sp. SKA34]
          Length = 762

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 105/323 (32%), Gaps = 65/323 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++    +I  ++ SG+ G GGAGF T  K     +        L++NA E EP    D  
Sbjct: 130 DRDPAELIETIRLSGIAGLGGAGFPTARKL----QGGLGNVDILIINAAECEPYITADDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +IEG  I    I      I +        ++L+  V E              
Sbjct: 186 LMRDYAEEVIEGVRILRHIISPKLTIIGIEDNKPEAIKALEHHVTEAD------------ 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I++      Y  G    L++ L G++           +VG+      + N+ +   
Sbjct: 234 ---NILIRVVPTKYPSGSSKQLVKILTGREV---PSQSRSTSVGV-----IMQNIGTAFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G        V   +      L++K   G + 
Sbjct: 283 IKRAIIDGEPLI----------ERVVTLTGEAFKKRGNVFAMLGTPIAFLLDKF--GYKA 330

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
              +   +I G      LP                          + + + T+ I A  R
Sbjct: 331 DKKHPRVIIGGSLMGFTLPHSN-----------------------VPITKITNCILAPKR 367

Query: 336 --LSVFYKHESCGQCTPCREGTG 356
             L +     +C +C+ C +   
Sbjct: 368 KELPLHTYEMACIRCSACADVCP 390


>gi|258545780|ref|ZP_05706014.1| electron transport complex protein RnfC [Cardiobacterium hominis
           ATCC 15826]
 gi|258518970|gb|EEV87829.1| electron transport complex protein RnfC [Cardiobacterium hominis
           ATCC 15826]
          Length = 630

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/321 (18%), Positives = 96/321 (29%), Gaps = 65/321 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
               D +   + A G+ G GGAGF T  K            + LV+NA E EP    D  
Sbjct: 132 TTDADALRERIAACGIVGLGGAGFPTARKL-------GHPANTLVINAAECEPYITCDDL 184

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            +R     +I G  IA+  +GA      +  +  +   +L+ A  +              
Sbjct: 185 QIRENAADIIHGAQIAAKILGAEHIHFGIEDDKPQAIAALERAAADI------------- 231

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  + +      Y  G    L E L G +          ++ GL       +N  ++  
Sbjct: 232 NDPRLKISSVPTRYPSGNTRQLFELLLGVRVPAD---QHASDYGL-----ICHNSGTMKA 283

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   + RG      +   +  G         VN P  +         +LI +  G     
Sbjct: 284 VYDAVIRGEPLTERYTTISGEG---------VNQPQVLRIRTGAPVRDLIAQAGGEKGDN 334

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
                  I GG  +           I     L++ G+ L                 +   
Sbjct: 335 R-----YIIGGPMMGY-------QIISADTPLQKTGNSL----------------LLLPA 366

Query: 337 SVFYKHESCGQCTPCREGTGW 357
               +   C +C+ C +    
Sbjct: 367 IAPAEESPCIRCSRCADACPM 387


>gi|254993051|ref|ZP_05275241.1| PduS protein [Listeria monocytogenes FSL J2-064]
          Length = 451

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 108/301 (35%), Gaps = 55/301 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K+S           YL++NA E EP    D  +MR+     I+   +    +GA 
Sbjct: 20  FPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I  +  +  E  +L++A+ E               D  + +H     Y  G+E  ++
Sbjct: 73  FAVIATKRYYTEEIAALRSAITEL--------------DASVTIHEMDNVYPTGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P  VG       V+NV ++  V   ++  A              
Sbjct: 119 FEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIQDDAPVVR---------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P  ++  +   F+  +    G     +  L     GG          M 
Sbjct: 161 KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFL----DGGP---------MM 207

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES---CGQCTPCREGTG 356
           G + D   + E      T+ +IV + +  + K  ++      +E+   C QC+ C +   
Sbjct: 208 GKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCP 267

Query: 357 W 357
            
Sbjct: 268 R 268


>gi|47091942|ref|ZP_00229736.1| PduS protein [Listeria monocytogenes str. 4b H7858]
 gi|254932978|ref|ZP_05266337.1| PduS protein [Listeria monocytogenes HPB2262]
 gi|47019658|gb|EAL10397.1| PduS protein [Listeria monocytogenes str. 4b H7858]
 gi|293584536|gb|EFF96568.1| PduS protein [Listeria monocytogenes HPB2262]
 gi|328475177|gb|EGF45958.1| PduS protein [Listeria monocytogenes 220]
 gi|332311528|gb|EGJ24623.1| PduS type ferredoxin [Listeria monocytogenes str. Scott A]
          Length = 451

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 108/301 (35%), Gaps = 55/301 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K+S           YL++NA E EP    D  +MR+     I+   +    +GA 
Sbjct: 20  FPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I  +  +  E  +L++A+ E               D  + +H     Y  G+E  ++
Sbjct: 73  FAVIATKRYYTEEIAALRSAITEL--------------DASVTIHEMDNVYPTGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P  VG       V+NV ++  V   ++  A              
Sbjct: 119 FEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIQDDAPVVR---------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P  ++  +   F+  +    G     +  L     GG          M 
Sbjct: 161 KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFL----DGGP---------MM 207

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES---CGQCTPCREGTG 356
           G + D   + E      T+ +IV + +  + K  ++      +E+   C QC+ C +   
Sbjct: 208 GKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCP 267

Query: 357 W 357
            
Sbjct: 268 R 268


>gi|226223743|ref|YP_002757850.1| PduS protein [Listeria monocytogenes Clip81459]
 gi|254823604|ref|ZP_05228605.1| PduS protein [Listeria monocytogenes FSL J1-194]
 gi|254852986|ref|ZP_05242334.1| PduS protein [Listeria monocytogenes FSL R2-503]
 gi|300764288|ref|ZP_07074282.1| PduS protein [Listeria monocytogenes FSL N1-017]
 gi|225876205|emb|CAS04914.1| Putative PduS protein [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258606329|gb|EEW18937.1| PduS protein [Listeria monocytogenes FSL R2-503]
 gi|293592827|gb|EFG00588.1| PduS protein [Listeria monocytogenes FSL J1-194]
 gi|300514940|gb|EFK41993.1| PduS protein [Listeria monocytogenes FSL N1-017]
          Length = 451

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/301 (19%), Positives = 108/301 (35%), Gaps = 55/301 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K+S           YL++NA E EP    D  +MR+     I+   +    +GA 
Sbjct: 20  FPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I  +  +  E  +L++A+ E               D  + +H     Y  G+E  ++
Sbjct: 73  FAVIATKRYYTEEIAALRSAITEL--------------DASVTIHEMDNVYPTGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P  VG       V+NV ++  V   ++  A              
Sbjct: 119 FEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIQDDAPVVR---------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P  ++  +   F+  +    G     +  L     GG          M 
Sbjct: 161 KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFL----DGGP---------MM 207

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES---CGQCTPCREGTG 356
           G + D   + E      T+ +IV + +  + K  ++      +E+   C QC+ C +   
Sbjct: 208 GKLNDKSTIAEKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCP 267

Query: 357 W 357
            
Sbjct: 268 R 268


>gi|322613681|gb|EFY10621.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620252|gb|EFY17121.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623298|gb|EFY20139.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630503|gb|EFY27272.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632820|gb|EFY29565.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638847|gb|EFY35541.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640332|gb|EFY36991.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647162|gb|EFY43661.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648988|gb|EFY45431.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653895|gb|EFY50219.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661002|gb|EFY57231.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663057|gb|EFY59264.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668502|gb|EFY64657.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673362|gb|EFY69465.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679149|gb|EFY75203.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683243|gb|EFY79258.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685887|gb|EFY81877.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195173|gb|EFZ80354.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198741|gb|EFZ83841.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202385|gb|EFZ87428.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209230|gb|EFZ94166.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209787|gb|EFZ94710.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216113|gb|EGA00843.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223718|gb|EGA08025.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231324|gb|EGA15438.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323232584|gb|EGA16681.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240973|gb|EGA25013.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245608|gb|EGA29603.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247638|gb|EGA31587.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251080|gb|EGA34954.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254849|gb|EGA38644.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263372|gb|EGA46906.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266309|gb|EGA49798.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271453|gb|EGA54875.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 451

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPQLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P +VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPTSVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|284801462|ref|YP_003413327.1| hypothetical protein LM5578_1215 [Listeria monocytogenes 08-5578]
 gi|284994604|ref|YP_003416372.1| hypothetical protein LM5923_1168 [Listeria monocytogenes 08-5923]
 gi|284057024|gb|ADB67965.1| hypothetical protein LM5578_1215 [Listeria monocytogenes 08-5578]
 gi|284060071|gb|ADB71010.1| hypothetical protein LM5923_1168 [Listeria monocytogenes 08-5923]
          Length = 451

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 106/301 (35%), Gaps = 55/301 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K+S           YL++NA E EP    D  +MR+     I+   +    +GA 
Sbjct: 20  FPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I  +  +  E  +L++A+ E               D  + +H     Y  G+E  ++
Sbjct: 73  FAVIATKRYYTEEIAALRSAITEL--------------DASVTIHEMDNVYPTGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P  VG       V+NV ++  V   ++  A              
Sbjct: 119 FEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIQDDAPVVR---------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P  ++  +   F+  +    G     +  L     GG  +  L      
Sbjct: 161 KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTTLNEYLFL----DGGPMMGKLNDQ--- 213

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES---CGQCTPCREGTG 356
                   + +      T+ +IV + +  + K  ++      +E+   C QC+ C +   
Sbjct: 214 ------STIADKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCP 267

Query: 357 W 357
            
Sbjct: 268 R 268


>gi|254898697|ref|ZP_05258621.1| hypothetical protein LmonJ_02740 [Listeria monocytogenes J0161]
          Length = 451

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 106/301 (35%), Gaps = 55/301 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K+S           YL++NA E EP    D  +MR+     I+   +    +GA 
Sbjct: 20  FPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I  +  +  E  +L++A+ E               D  + +H     Y  G+E  ++
Sbjct: 73  FAVIATKRYYTEEIAALRSAITEL--------------DASVTIHEMDNVYPTGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P  VG       V+NV ++  V   ++  A              
Sbjct: 119 FEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIQDDAPVVR---------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P  ++  +   F+  +    G     +  L     GG  +  L      
Sbjct: 161 KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTTLNEYLFL----DGGPMMGKLNDQ--- 213

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES---CGQCTPCREGTG 356
                   + +      T+ +IV + +  + K  ++      +E+   C QC+ C +   
Sbjct: 214 ------STIADKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCP 267

Query: 357 W 357
            
Sbjct: 268 R 268


>gi|313619417|gb|EFR91131.1| PduS type ferredoxin, putative [Listeria innocua FSL S4-378]
          Length = 455

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 120/324 (37%), Gaps = 55/324 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 2   LSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 54

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A I  +  +  E  +L++A+ E  A            
Sbjct: 55  MRNHAVETIKAIEMVKNQVGAEFAVIATKRYYTEEIAALRSAITELNA------------ 102

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 103 --SVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 152

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              ++  A              K  +++G V  P  ++  +   F+  +    G     +
Sbjct: 153 FHAIQDDAPVIR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEY 202

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG  +  L              + E      T+ +IV + +  + K  ++  
Sbjct: 203 LFL----DGGPMMGKLNDQ---------STIAEKVVTKTTSGMIVAEDTGYLHKLHYQTV 249

Query: 338 VFYKHES---CGQCTPCREGTGWM 358
               +E+   C QC+ C +     
Sbjct: 250 EQIFNETKSACIQCSLCSDLCPRQ 273


>gi|254283952|ref|ZP_04958920.1| serine/threonine protein kinase [gamma proteobacterium NOR51-B]
 gi|219680155|gb|EED36504.1| serine/threonine protein kinase [gamma proteobacterium NOR51-B]
          Length = 510

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 97/328 (29%), Gaps = 55/328 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K   +          +++N  E EP    D  IM+ +P  ++ G  + ++ +GA 
Sbjct: 144 FPTAVK---LMAREGRSIDTVIINGTECEPYITADDTIMQCQPREIVLGAQMLAYIVGAE 200

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I V         +++ A                G D  I V      Y  G E  L+
Sbjct: 201 HIVIGVEDNKPTAFAAMRDA--------------ASGIDNRIEVVSFPTKYPSGGEKQLI 246

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           E L GK+         P+++G+       NN  +   +   +  G               
Sbjct: 247 EILTGKQV---PSGGLPSDIGI-----LCNNPGTAVAIYEAIANG----------RPLTR 288

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGG-----SSVPCL 293
           ++ +++G  +  P   E  +      L++            +      G     + +P +
Sbjct: 289 RIVTLTGEALQNPGNFEAMLGTPISHLLDAAGYRAEQNNRLIHGGPMMGFALHSADIPII 348

Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES--------- 344
                  A  + +      +         M       + + +   ++             
Sbjct: 349 KTTNCILAPTEQELPTPAPAQPCIR--CGMCAEACPAELLPQQLYWFARAKDNDSLEQHN 406

Query: 345 ---CGQCTPCREGTGWMMRVMERLVKGI 369
              C +C  C       + +++    G 
Sbjct: 407 LFDCIECGACSWVCPSQIPLVQYYRAGK 434


>gi|299143760|ref|ZP_07036840.1| electron transport complex, RnfABCDGE type, C subunit
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518245|gb|EFI41984.1| electron transport complex, RnfABCDGE type, C subunit
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 442

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 132/389 (33%), Gaps = 74/389 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           EK  D II+ VK  GL G GGAGF    K         +     V+N  E EP    D  
Sbjct: 121 EKSMDEIISFVKNKGLVGMGGAGFPLHAKLRSENPGLDEC----VINGAECEPFLTCDHR 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           IM  +   ++ G  I +       +++ +        E ++  + E              
Sbjct: 177 IMVEKTEEVLSGLEIFADFYN-KVSYMAIEENKPDAIEIMEKKIHENPKWS--------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              ++ V      Y  G+   L E++   +  P+       +VG++     + NV +   
Sbjct: 227 ---NLKVVGCQTKYPQGDSKRLSEAVL-NRIVPQNGV--TNDVGVF-----LTNVGT--- 272

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
                    ++Y       +   ++ ++SG  +N P  +   +     ++I   CGG++ 
Sbjct: 273 -------TLAFYEAMIEGRSSYERVITVSGSGINIPKNILVKIGTPVKDII-DFCGGLK- 323

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL--GTAAVIVMDRSTDIIKAI 333
             DN + +I GG                    + ++ S +   T+ +++           
Sbjct: 324 --DNFIEIICGGPMTG--------------KSVFDLNSPITKTTSGLLIFTDEE------ 361

Query: 334 WRLSVFYKHESCGQCTPCREGTGWMMRVME---RLVKGIAQKREIDLLYEVSKNIEGRTI 390
                  K   C +C+ C +     +   +    ++KG     +       +       I
Sbjct: 362 ---IENTKETPCIRCSRCVDHCPANINPTDINAAILKGNVDFCD----ELHADQCMECGI 414

Query: 391 CAL-GDAAAWPIQGLIKNFRPLIEERIDQ 418
           C+    A     Q  +K  +  I+ R+ +
Sbjct: 415 CSFVCPAKRNLTQS-VKLAKREIKSRVKR 442


>gi|200388299|ref|ZP_03214911.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605397|gb|EDZ03942.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 451

 Score = 94.3 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+      G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPLLPDG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLHEVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHLLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|197248972|ref|YP_002147010.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197212675|gb|ACH50072.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 451

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+      G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPLLPDG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLHEVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHLLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|323219137|gb|EGA03637.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
          Length = 414

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 96/280 (34%), Gaps = 54/280 (19%)

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           +VNA E EP    D+ +M  +   L+ G   A  A GA    I ++ ++ R  +    A+
Sbjct: 11  LVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAID----AL 66

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                +G             I +H     Y  G+E   +    G++  P      P +VG
Sbjct: 67  TPQLPAG-------------IRLHILPDVYPAGDEVLTIWMATGRRVAP---AALPTSVG 110

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           +      VNNV+++  +   + +                +  +++G V  P TV   + +
Sbjct: 111 V-----VVNNVQTVLNIARAVEQQFPVTR----------RTLTVNGAVARPLTVTVPVGM 155

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
           +  E++    G            I GG  +  L         +             T  +
Sbjct: 156 SLHEVLALAGGATVDDP----GFINGGPMMGGLITS--LDNPVTKT----------TGGL 199

Query: 321 IVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTGW 357
           +V+ +S  +I+      R  +      C QC  C +    
Sbjct: 200 LVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPR 239


>gi|39933212|ref|NP_945488.1| oxidoreductase [Rhodopseudomonas palustris CGA009]
 gi|39652837|emb|CAE25579.1| possible oxidoreductase [Rhodopseudomonas palustris CGA009]
          Length = 673

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 59/122 (48%)

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           ++D    + + +      V D +  ++ A++        +SCG CTPCR GT  +   ++
Sbjct: 43  EFDEGNAIRAFIADRGFFVFDPTVSLVDALFHYLKAAAEQSCGACTPCRIGTVLVRDALD 102

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           ++ +G+     +D +  + + I   ++C LG   A  +  ++++FR  IE+ + Q+    
Sbjct: 103 QMRRGLDAALTLDDIVMLGEQIRQTSLCGLGQTCAVALLAVLRDFRERIEQELAQHRPIP 162

Query: 424 FQ 425
            Q
Sbjct: 163 AQ 164


>gi|62180631|ref|YP_217048.1| propanediol utilization polyhedral bodies [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62128264|gb|AAX65967.1| Propanediol utilization: polyhedral bodies [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322715103|gb|EFZ06674.1| Propanediol utilization protein pduS [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 451

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 97/280 (34%), Gaps = 54/280 (19%)

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           +VNA E EP    D+ +M  +   L+ G   A  A GA    I ++ ++ R  +    A+
Sbjct: 48  LVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAID----AL 103

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                +G             I +H     Y  G+E   +    G++  P      PA+VG
Sbjct: 104 TPQLPAG-------------IRLHILPDVYPAGDEVLTIWMATGRRVAP---AALPASVG 147

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           +      VNNV+++  +   + +                +  +++G V  P TV   + +
Sbjct: 148 V-----VVNNVQTVLNIARAVEQQFPVTR----------RTLTVNGAVARPLTVTAPVGM 192

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
           +  E++    G            I GG  +  L         +             T  +
Sbjct: 193 SLHEVLALAGGATVDNP----GFINGGPMMGGLITS--LDNPVTKT----------TGGL 236

Query: 321 IVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTGW 357
           +V+ +S  +I+      R  +      C QC  C +    
Sbjct: 237 LVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPR 276


>gi|238795735|ref|ZP_04639249.1| Cobalamin reductase [Yersinia mollaretii ATCC 43969]
 gi|238720461|gb|EEQ12263.1| Cobalamin reductase [Yersinia mollaretii ATCC 43969]
          Length = 459

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 94/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K               +VNA E EP    D+ ++  +   L+ G +    A GA 
Sbjct: 41  FPTAVKLQAQAD-------IFLVNAAECEPMLKVDQQLIPRQAGRLVRGVLYGMVATGAR 93

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++     +L   +                    I +H     Y  G+E   +
Sbjct: 94  EGIIALKAKYEEAIAALTPLL-----------------PPQIRLHILPDVYPAGDEVITI 136

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P  +G+      VNNV+++  V   + +   W            
Sbjct: 137 WLATGRRVPP---AALPITIGV-----VVNNVQTLLNVARAVEQ--QWPVTR-------- 178

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   +  +  E++    G          A I GG  +    A    
Sbjct: 179 RTLTVNGAVARPLTLTVPLGTSLREVLALAGGATIDNP----AYINGGPMMGH--ALHDL 232

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF---YKHESCGQCTPCREGTG 356
              +             T  ++V+  +  +I    R            C QC  C E   
Sbjct: 233 DQPVTKT----------TGGLLVLPANHLLITRRARSDQDVLAIARAVCEQCRMCTELCP 282

Query: 357 W 357
            
Sbjct: 283 R 283


>gi|217964789|ref|YP_002350467.1| PduS protein [Listeria monocytogenes HCC23]
 gi|217334059|gb|ACK39853.1| PduS protein [Listeria monocytogenes HCC23]
 gi|307570650|emb|CAR83829.1| propanediol utilization protein (electron transport protein)
           [Listeria monocytogenes L99]
          Length = 451

 Score = 93.9 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 106/302 (35%), Gaps = 55/302 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K+S           YL++NA E EP    D  +MR+     I+   +    +GA 
Sbjct: 20  FPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I  +  +  E  +L++A+ E               D  + +H     Y  G+E  ++
Sbjct: 73  FAVIATKRYYTEEIAALRSAITEL--------------DATVTIHEMDNVYPTGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P  VG       V+NV ++  V   ++  A              
Sbjct: 119 FEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIQDDAPVIR---------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P  ++  +   F+  +    G     +  L     GG  +  L      
Sbjct: 161 KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFL----DGGPMMGKLNDQ--- 213

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES---CGQCTPCREGTG 356
                   + +      T+ +IV + +  + K  ++      +E+   C QC+ C +   
Sbjct: 214 ------STIADKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCP 267

Query: 357 WM 358
             
Sbjct: 268 RQ 269


>gi|315281896|ref|ZP_07870421.1| PduS type ferredoxin, putative [Listeria marthii FSL S4-120]
 gi|313614458|gb|EFR88077.1| PduS type ferredoxin, putative [Listeria marthii FSL S4-120]
          Length = 369

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 120/324 (37%), Gaps = 55/324 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +  I+ ++K +G+ G GGAGF T  K+S           YL++NA E EP    D  +
Sbjct: 2   LSQMSILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFV 54

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR+     I+   +    +GA  A I  +  +  E  +L+AA+ E               
Sbjct: 55  MRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTAEIAALRAAISEL-------------- 100

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D  + +H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V
Sbjct: 101 DASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNV 152

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              ++  A              K  +++G V  P  ++  +   F+  +    G     +
Sbjct: 153 FHAIQDDAPVVR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLAEY 202

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
             L     GG  +  L              + E      T+ +IV + +  + K  ++  
Sbjct: 203 LFL----DGGPMMGKLNDQ---------STISEKVVTKTTSGLIVAEDTGYLHKLHYQTV 249

Query: 338 VFYKHES---CGQCTPCREGTGWM 358
               +E+   C QC+ C +     
Sbjct: 250 EQIFNETKSACIQCSLCSDLCPRQ 273


>gi|310829619|ref|YP_003961976.1| ethanolamine utilization Fe-S center protein eut [Eubacterium
           limosum KIST612]
 gi|308741353|gb|ADO39013.1| ethanolamine utilization Fe-S center protein eut [Eubacterium
           limosum KIST612]
          Length = 441

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 97/301 (32%), Gaps = 60/301 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K              ++VN  E EP    D+ +M    H ++           A 
Sbjct: 22  FPTHVK-------IDAEVDTVIVNGAECEPLLRVDQQLMAERAHHMLVALQAVMDHTKAK 74

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              + ++ +++    +L+                 L     I +H     Y  G+E  L+
Sbjct: 75  AGIVGLKKKYVPAIGALRQ---------------DLPNFPKIDLHIMNNFYPAGDEQTLV 119

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G +  P  +   P NVG     T V NVE++  +  I+                  
Sbjct: 120 YETTG-RIVP--EGGIPLNVG-----TLVINVETLLNIYDIMNEDKPVVD---------- 161

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V    T +  + IT  E +E   G           +I GG          M 
Sbjct: 162 KYITVTGAVRNKITTKVPLGITVREALELAGGTTISD----FVIINGGP---------MM 208

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV---FYKHESCGQCTPCREGTG 356
           G I+D D          T   IV+     +I++  R           +C QC+ C E   
Sbjct: 209 GKIVDIDSYV----TKTTKGFIVLPSDHPLIESKTRSIQDTIKLAGMACMQCSLCTEVCP 264

Query: 357 W 357
            
Sbjct: 265 R 265


>gi|238784335|ref|ZP_04628346.1| Cobalamin reductase [Yersinia bercovieri ATCC 43970]
 gi|238714763|gb|EEQ06764.1| Cobalamin reductase [Yersinia bercovieri ATCC 43970]
          Length = 459

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 95/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     +         +VNA E EP    D+ ++  +   L+ G +    A GA 
Sbjct: 41  FPTAVKLQAPAE-------IFLVNAAECEPMLKVDQQLIPRQAARLVRGLLYGMVATGAR 93

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ +++    +L   +                    I +H     Y  G+E   +
Sbjct: 94  EGIIALKAKYVAAIAALTPLL-----------------PPQIRLHILPDVYPAGDEVITI 136

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P  +G+      VNNV+++  V   + +   W            
Sbjct: 137 WLATGRRVPP---AALPVTIGV-----VVNNVQTLLNVARAVEQ--QWPVTR-------- 178

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   +  +  E++    G          A I GG  +    A    
Sbjct: 179 RTLTVNGAVAQPLTLTVPLGTSLREVLALAGGATIDHP----AYINGGPMMGH--ALHDL 232

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF---YKHESCGQCTPCREGTG 356
              +             T  ++V+     +I    R            C QC  C E   
Sbjct: 233 DQPVTKT----------TGGLLVLPADHLLITRRARSDQDVLAIARAVCEQCRMCTELCP 282

Query: 357 W 357
            
Sbjct: 283 R 283


>gi|192288571|ref|YP_001989176.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodopseudomonas palustris TIE-1]
 gi|192282320|gb|ACE98700.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Rhodopseudomonas palustris TIE-1]
          Length = 663

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%)

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           ++D    + + +      V D +  ++ A++        +SCG CTPCR GT  +   ++
Sbjct: 33  EFDEGNAIRAFIADRGFFVFDPTVSLVDALFHYLKAAAEQSCGACTPCRIGTVLVRDALD 92

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           ++ +G+     +D +  + + I   ++C LG   A  +   +++FR  IE+ + Q+    
Sbjct: 93  QMRRGLDAALTLDDIVMLGEQIRQTSLCGLGQTCAVALLAALRDFRGRIEQELAQHRPIP 152

Query: 424 FQ 425
            Q
Sbjct: 153 AQ 154


>gi|134299165|ref|YP_001112661.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051865|gb|ABO49836.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Desulfotomaculum reducens MI-1]
          Length = 440

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 107/327 (32%), Gaps = 69/327 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        S +   +++N  E EP    D+ +MR  P  L++G  +   A+GA 
Sbjct: 22  FPTHVK-------TSAKVDCVIINGAECEPLLRVDQQLMRDMPRNLLKGLSMLLDAVGAK 74

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++    E L + +                 D  I +      Y  G+E  ++
Sbjct: 75  RGVIALKKKYTVAIEQLSSCI----------------TDPRIEIFKLDDFYPAGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + GK   P    P   +         V+NVE++  V   L       +          
Sbjct: 119 REVTGKS-IPEAGIPLQVD-------CIVSNVETVLNVAASLEGQPVTDTW--------- 161

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
              +++G V  P T +  +  +  E++ +            LA+I GG  +  L      
Sbjct: 162 --LTVTGRVTEPFTCQAPIGTSKREILAQAG----VQKQEGLALIEGGPMMGKLVEDW-- 213

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +             T  +IV+     ++ A       Y  ++   C  C   T    
Sbjct: 214 DTPVTKT----------TKGLIVVPEDHPLVTARKAPLEVYLRQARSVCMGCARCTEMCP 263

Query: 360 R-----------VMERLVKGIAQKREI 375
           R           +M  +  G A  + I
Sbjct: 264 RNLLGHNLQPHLIMRAMAYGKADSQAI 290


>gi|168818260|ref|ZP_02830260.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205345117|gb|EDZ31881.1| polyhedral body protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086486|emb|CBY96257.1| Electron transport complex protein rnfC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 451

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 87  EGVIALKEKYRRAID----ALTPQLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 130 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++                 I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPIGMSLHEVLALAGDATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|291545890|emb|CBL18998.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           sp. SR1/5]
          Length = 349

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 109/356 (30%), Gaps = 71/356 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
               K+ +  ++ I+  ++  G+ G+GGAGF T +K S       D+  +++VN  E EP
Sbjct: 18  YAPAKLSDLSKEDILKRIQEGGVVGQGGAGFPTHVKLS---PKEPDKIDHILVNGAECEP 74

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D   M  EP +++ G  +   A       I +          ++ A+         
Sbjct: 75  YITSDYRRMMEEPESIVGGLEVILKAFPKAVGCICIEDNKPDCIARMKEAIKGKE----- 129

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                      + V      Y  G E  L+ ++ G++    +    PA+VG       V+
Sbjct: 130 ----------RMEVKELKTKYPQGGERTLIYAVTGREINSTM---LPADVG-----CVVD 171

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NVE++  V   +  G    S          +  +++G  +  P            EL++ 
Sbjct: 172 NVETVTSVYKAVILGQPVIS----------RNVTVTGDGIRTPKNFSVLTGTDLSELVDA 221

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
             G      + +   I GG  +                 L              +    D
Sbjct: 222 AGG----LKEKIAKAISGGPMMGFALYDLHIPCTKTTSSL--------------LFLERD 263

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
            +    ++       +C  C  C                G      +  L E    
Sbjct: 264 AVSEAKQI-----QTACINCGRCVSVCP-----------GHVVPARLATLAEHGDM 303


>gi|121534105|ref|ZP_01665930.1| electron transport complex, RnfABCDGE type, C subunit [Thermosinus
           carboxydivorans Nor1]
 gi|121307208|gb|EAX48125.1| electron transport complex, RnfABCDGE type, C subunit [Thermosinus
           carboxydivorans Nor1]
          Length = 439

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 96/343 (27%), Gaps = 63/343 (18%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           ++   L +                    I + ++ +G+ G GGA F T +K   M     
Sbjct: 98  IEADGLDEW--ADGLPLSRDWRSMDSGAIRDIIRQAGIVGMGGATFPTHVK---MAPPKE 152

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
                 ++N  E EP    D  +M      +  G  IA   +G     I +        +
Sbjct: 153 KPVDTFILNGAECEPYLTADHRVMLEAADRVATGMQIAMKVLGVTKGLIGIEENKPDAID 212

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
           S++ A                G    I V      Y  G E  L++ L   +  P    P
Sbjct: 213 SMRKACA------------GTG----IEVVPLKTKYPQGAEKTLIKVLTD-REVPSGGLP 255

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
                        V NV ++  +   + +G                     G V  P  +
Sbjct: 256 -------MDVGVVVQNVGTVVAIADAVEKGLPLIERVVT---------VTGGCVAEPKNL 299

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
              +  TF + IE   G      +  + VI GG  +    A +     +           
Sbjct: 300 LLRIGTTFRQAIELCGG----FKEQPVKVIMGGPMMGL--AQRTLEVPV----------I 343

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
            GT+ ++ +                     C +C  C E    
Sbjct: 344 KGTSGILALAAGD---------VNHGPERPCIRCGRCVEACPM 377


>gi|152995571|ref|YP_001340406.1| RnfABCDGE type electron transport complex subunit C [Marinomonas
           sp. MWYL1]
 gi|150836495|gb|ABR70471.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas
           sp. MWYL1]
          Length = 981

 Score = 93.5 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 96/298 (32%), Gaps = 60/298 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       + ++NA E EP    D  ++R +   L+ G  +    + A 
Sbjct: 146 FPTQVKLQGAHKNP---LTHFIINAAECEPYITADDMLIREKTLELVLGIEMLQHLVEAD 202

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+  + +  +               I +      Y  G E  L+
Sbjct: 203 NVIIGIEDNKPTAIAALKTVLTQRNSK--------------IQIAVVPTKYPSGGEKQLI 248

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+        +PA++G+        NV +   V   + +G           +R T
Sbjct: 249 QLLTGKEV---PSGQYPADIGV-----LCQNVGTCVAVHDAITQGKPLI-------SRFT 293

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
            L      +  P  VE  +    + L+E            L  +I GG  +         
Sbjct: 294 TLTG--DALKSPQNVEVLLGTPVEHLLEYAD----SEPKKLSRLIMGGPMMGY------- 340

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
                          L +AAV ++  S  I+ A  +       E +C +C  C +   
Sbjct: 341 --------------TLDSAAVPIVKTSNCILAASKKELPPPAPEQACIRCGMCEQACP 384


>gi|318605053|emb|CBY26551.1| cob(III)alamin reductase @ Cob(II)alamin reductase [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 467

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 97/301 (32%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     +         +VNA E EP    D+ ++  +   L+ G +    A GA 
Sbjct: 46  FPTAVKLQAQAE-------IFLVNAAECEPMLKVDQQLIPRQAARLVRGVLYGMKATGAC 98

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++     +L   +                    I +H     Y  G+E   +
Sbjct: 99  EGIIALKAKYEEAIAALTPLL-----------------PPQIRLHILPDVYPAGDEVITI 141

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P ++G+      VNNV+++  V   + +   W            
Sbjct: 142 WLATGRRVPP---AALPISIGV-----VVNNVQTLLNVARAVEQ--QWPVTR-------- 183

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   +  +  E++    G          A I GG  +    A    
Sbjct: 184 RTLTVNGAVARPLTLTVPLGTSLREVLALAGGATINNP----AYINGGPMMGH--ALHDL 237

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL---SVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  +  +I    R     +      C QC  C E   
Sbjct: 238 DQPVTKT----------TGGLLVLPANHLLITRRARSDKDVLAIARTVCEQCRMCTELCP 287

Query: 357 W 357
            
Sbjct: 288 R 288


>gi|224502562|ref|ZP_03670869.1| hypothetical protein LmonFR_08584 [Listeria monocytogenes FSL
           R2-561]
 gi|254830104|ref|ZP_05234759.1| hypothetical protein Lmon1_02045 [Listeria monocytogenes 10403S]
          Length = 451

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 106/302 (35%), Gaps = 55/302 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K+S           YL++NA E EP    D  +MR+     I+   +    +GA 
Sbjct: 20  FPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I  +  +  E  +L++A+ E               D  + +H     Y  G+E  ++
Sbjct: 73  FAVIATKRYYTEEIAALRSAITEL--------------DASVTIHEMDNVYPTGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P  VG       V+NV ++  V   ++  A              
Sbjct: 119 FEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIQDDAPVVR---------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +++G V  P  ++  +   F+  +    G     +  L     GG  +  L      
Sbjct: 161 KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFL----DGGPMMGKLNDQ--- 213

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES---CGQCTPCREGTG 356
                   + +      T+ +IV + +  + K  ++      +E+   C QC+ C +   
Sbjct: 214 ------STIADKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCP 267

Query: 357 WM 358
             
Sbjct: 268 RQ 269


>gi|6900001|emb|CAB71310.1| electron transfer protein [Clostridium sticklandii]
          Length = 402

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 38/248 (15%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPH 103
           I  ++ +G+ G GGAGF T +K +   +       Y++ N  E EP    +  +M  +P 
Sbjct: 80  IEAIQEAGIVGSGGAGFPTHVKLNVNLE-----GGYVIANGAECEPVLGHNIKLMEEDPQ 134

Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV 163
            +I G         A  A+I ++ +  +    L+ A +                + DI V
Sbjct: 135 LIIRGLKYVKEITNASKAYIAMKAKHRKALRILKTACEL---------------EPDIEV 179

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
                 Y  G+E A++  + G   +P  + P  AN         + NVE++  +   +  
Sbjct: 180 KILPDMYPAGDERAIVRDILGVLLEP-GQLPKAANA-------VIQNVETLKHIVNAIE- 230

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
                          TK  +++G V      +  M +   E ++K+     G  +    +
Sbjct: 231 ---------LRKPYITKDITVAGRVMDATDGKVFMDVPVGESVKKYIDLCGGYMNPHGEI 281

Query: 284 IPGGSSVP 291
           + GG    
Sbjct: 282 VMGGPFTG 289


>gi|332161164|ref|YP_004297741.1| putative NADH dehydrogenase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665394|gb|ADZ42038.1| putative NADH dehydrogenase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 467

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 96/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     +         +VNA E EP    D+ ++  +   L+ G +    A GA 
Sbjct: 46  FPTAVKLQAQAE-------IFLVNAAECEPMLKVDQQLIPRQAARLVRGVLYGMKATGAC 98

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++     +L   +                    I +H     Y  G+E   +
Sbjct: 99  EGIIALKAKYEEAIAALTPLL-----------------PPQIRLHILPDVYPAGDEVITI 141

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P ++G+      VNNV+++  V   + +   W            
Sbjct: 142 WLATGRRVPP---AALPISIGV-----VVNNVQTLLNVARAVEQ--QWPVTR-------- 183

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   +  +  E++    G          A I GG  +    A    
Sbjct: 184 RTLTVNGAVARPLTLTVPLGTSLREVLALAGGATINNP----AYINGGPMMGH--ALHDL 237

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL---SVFYKHESCGQCTPCREGTG 356
              +             T  ++V+     +I    R     +      C QC  C E   
Sbjct: 238 DQPVTKT----------TGGLLVLPADHLLITRRARSDKDVLAIARTVCEQCRMCTELCP 287

Query: 357 W 357
            
Sbjct: 288 R 288


>gi|328466674|gb|EGF37805.1| PduS protein [Listeria monocytogenes 1816]
          Length = 423

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 103/283 (36%), Gaps = 48/283 (16%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            YL++NA E EP    D  +MR+     I+   +    +GA  A I  +  +  E  +L+
Sbjct: 3   EYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALR 62

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           +A+ E               D  + +H     Y  G+E  ++  + G+   P      P 
Sbjct: 63  SAITEL--------------DASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG---IPL 105

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VG       V+NV ++  V   ++  A              K  +++G V  P  ++  
Sbjct: 106 MVG-----CIVSNVSTMWNVFHAIQDDAPVVR----------KQLTVTGAVGEPKLLDVP 150

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +   F+  +    G     +  L     GG          M G + D   + E      T
Sbjct: 151 VGTPFEVCLAAAGGTNLDEYLFL----DGGP---------MMGKLNDKSTIAEKVVTKTT 197

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHES---CGQCTPCREGTGW 357
           + +IV + +  + K  ++      +E+   C QC+ C +    
Sbjct: 198 SGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCPR 240


>gi|206891092|ref|YP_002249519.1| F420-non-reducing hydrogenase vhc iron-sulfur subunit D
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743030|gb|ACI22087.1| F420-non-reducing hydrogenase vhc iron-sulfur subunit D
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 274

 Score = 93.1 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 54/117 (46%)

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             +D+  L    + +G+A  +  +    + + I     + +  SC +C PCR GT  M  
Sbjct: 139 VDIDWQTLSRTVATVGSAGKLFWEEDKCMAEMIDFFLSYAQENSCAECIPCRIGTKRMQE 198

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +++++  G    RE+ LL   + +I   + C LG  A   ++  +++ +  IE  + 
Sbjct: 199 MVKKIFDGSISTRELSLLEYFADDIGASSKCDLGLMAGKAVKFALQHCKSDIEAHLK 255


>gi|310659538|ref|YP_003937259.1| electron transfer protein [Clostridium sticklandii DSM 519]
 gi|308826316|emb|CBH22354.1| Electron transfer protein [Clostridium sticklandii]
          Length = 428

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 38/248 (15%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPH 103
           I  ++ +G+ G GGAGF T +K +   +       Y++ N  E EP    +  +M  +P 
Sbjct: 79  IEAIQEAGIVGSGGAGFPTHVKLNVNLE-----GGYVIANGAECEPVLGHNIKLMEEDPQ 133

Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV 163
            +I G         A  A+I ++ +  +    L+ A +                + DI V
Sbjct: 134 LIIRGLKYVKEITNASKAYIAMKAKHRKALRILKTACEL---------------EPDIEV 178

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
                 Y  G+E A++  + G   +P  + P  AN         + NVE++  +   +  
Sbjct: 179 KILPDMYPAGDERAIVRDILGVLLEP-GQLPKAANA-------VIQNVETLKHIVNAIE- 229

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
                          TK  +++G V      +  M +   E ++K+     G  +    +
Sbjct: 230 ---------LRKPYITKDITVAGRVMDATDGKVFMDVPVGESVKKYIDLCGGYMNPHGEI 280

Query: 284 IPGGSSVP 291
           + GG    
Sbjct: 281 VMGGPFTG 288


>gi|313609317|gb|EFR84954.1| PduS type ferredoxin, putative [Listeria monocytogenes FSL F2-208]
          Length = 427

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 102/288 (35%), Gaps = 48/288 (16%)

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
           S    YL++NA E EP    D  +MR+     I+   +    +GA  A I  +  +  E 
Sbjct: 3   SGEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEI 62

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            +L++A+ E               D  + +H     Y  G+E  ++  + G+   P    
Sbjct: 63  AALRSAITEL--------------DASVTIHEMDNVYPTGDEQVMVFEVTGRVVPPSG-- 106

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCT 253
             P  VG       V+NV ++  V   ++  A              K  +++G V  P  
Sbjct: 107 -IPLMVG-----CIVSNVSTMWNVFHAIQDDAPVVR----------KQLTVTGAVGEPKL 150

Query: 254 VEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGS 313
           ++  +   F+  +    G     +  L     GG  +  L              + +   
Sbjct: 151 LDVPVGTPFEVCLAAAGGTNLDEYLFL----DGGPMMGKLNDQ---------STIADKVV 197

Query: 314 GLGTAAVIVMDRSTDIIKAIWRLSVFYKHES---CGQCTPCREGTGWM 358
              T+ +IV + +  + K  ++      +E+   C QC+ C +     
Sbjct: 198 TKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCPRQ 245


>gi|167759012|ref|ZP_02431139.1| hypothetical protein CLOSCI_01359 [Clostridium scindens ATCC 35704]
 gi|167663419|gb|EDS07549.1| hypothetical protein CLOSCI_01359 [Clostridium scindens ATCC 35704]
          Length = 440

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 112/358 (31%), Gaps = 63/358 (17%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  V  + E  ++ I+N +  +G+ G GGAGF T +K S       ++  Y++ N  E E
Sbjct: 110 YPAVKPLDEMSKEEILNIIGNAGVVGMGGAGFPTRVKLS---PKEPEKIDYIIANCAECE 166

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   +   P  L+ G  I             V        E L+           
Sbjct: 167 PYITADYRTIMETPEKLVGGMKIVLKLFDNAKGIFGVEDNKPDCIEKLKE---------- 216

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           L  +        + V      Y  G E  L+ +  G+          PA+ G       V
Sbjct: 217 LTKDEP-----RMEVLALKTKYPQGGERQLIYATTGRAIN---SAMLPADAG-----CVV 263

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NV ++  +   +  G               ++ ++SG  VN P        +   EL+E
Sbjct: 264 DNVATMVSIYQAVVEG----------KPSMERVVTVSGDAVNEPGNFRVPFGMNQAELVE 313

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA----VIVM 323
              GG +   + L   I GG  +    A       +       +G      A       +
Sbjct: 314 -AAGGFKTEPEKL---ISGGPMMGF--AMFTLDVPVTKTSSSILGFTKDEVAQFEPSACI 367

Query: 324 DRSTDIIKAIWRLS--------------VFYKHES--CGQCTPCREGTGWMMRVMERL 365
           +    +     RL                F  HE   C +C  C        ++ + +
Sbjct: 368 NCGRCVDACPSRLIPSRLADYAEHHDEEAFTSHEGLECMECGSCSFVCPAKRQLKQAI 425


>gi|153854921|ref|ZP_01996144.1| hypothetical protein DORLON_02150 [Dorea longicatena DSM 13814]
 gi|149752623|gb|EDM62554.1| hypothetical protein DORLON_02150 [Dorea longicatena DSM 13814]
          Length = 440

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 109/349 (31%), Gaps = 63/349 (18%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +  V  + +  ++ I+N +  +G+ G GGAGF T +K S       ++  Y++ N  E E
Sbjct: 110 YPAVTPLEDMSKEDILNAIGTAGVVGMGGAGFPTRVKLS---PKEPEKIDYIIANCAECE 166

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M   P  L+ G  I             V        E L+           
Sbjct: 167 PYITADYRTMIETPEKLVGGMKIILRLFDNAKGIFGVEDNKPDCIEKLRE---------- 216

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           L  +        + V      Y  G E  L+ +  G+          PA+ G       V
Sbjct: 217 LTKDEP-----RMEVLALKTKYPQGGERQLIYATTGRAIN---SAMLPADAG-----CVV 263

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NV ++  V   +  G               ++ ++SG  V  P        I   EL+E
Sbjct: 264 DNVATMVSVYQAVVEG----------KPSMERVVTVSGDAVAEPGNFRVPFGINQQELVE 313

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI----VM 323
              GG +   + L   I GG  +    +       +       +G      A +     +
Sbjct: 314 -AAGGFKTEPEKL---ISGGPMMGF--SMFSLDVPVTKTSSSILGFTKDEVAKMEPSACI 367

Query: 324 DRSTDIIKAIWRLS--------------VFYKHES--CGQCTPCREGTG 356
           +    +     RL                F KHE   C +C  C     
Sbjct: 368 NCGRCVEACPSRLIPSRLADYAEHHDEEKFTKHEGLECMECGSCSFVCP 416


>gi|262274543|ref|ZP_06052354.1| electron transport complex protein RnfC [Grimontia hollisae CIP
           101886]
 gi|262221106|gb|EEY72420.1| electron transport complex protein RnfC [Grimontia hollisae CIP
           101886]
          Length = 690

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 104/331 (31%), Gaps = 61/331 (18%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G    +    ++  + +I+ ++  G+ G GGAGF    K          R   L++N  E
Sbjct: 120 GDKVALADFRKESGEVLIDHIRLMGISGMGGAGFPAARKLQT----GIARTEILIINGAE 175

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EP    D  +M+     +++G  I    +      I +        ++L+ A       
Sbjct: 176 CEPYITADDRLMQERAEEIVQGVEILQHIVCPKLTVIALEDNKPEAIDALKRA------- 228

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                        DI+V      Y  G E  L++ + GK+         PA +G+     
Sbjct: 229 --------TSDKPDIVVQVVPTKYPSGGEKQLIKLITGKEVPTNG---IPAAIGV----- 272

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            + NV ++  +   +  G             GT   ++    N        +      L+
Sbjct: 273 MMQNVGTVYAIKRAVIDGEPLIERVVTL--TGT---TLKEQRNRWAL----LGTPVSFLL 323

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           +KH          L  VI GG  +                        +    V V   +
Sbjct: 324 DKHGY---QPDKKLERVIIGGPMMGY---------------------TIPHPNVPVTKVT 359

Query: 327 TDIIKAIWRLSVFYKHE-SCGQCTPCREGTG 356
             I+    R     + E +C +C+ C E   
Sbjct: 360 NCILVPSRREITPSEGEVACIRCSACAEACP 390


>gi|261343671|ref|ZP_05971316.1| electron transport complex protein RnfC [Providencia rustigianii
           DSM 4541]
 gi|282568054|gb|EFB73589.1| electron transport complex protein RnfC [Providencia rustigianii
           DSM 4541]
          Length = 779

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 132/412 (32%), Gaps = 86/412 (20%)

Query: 16  QGKSLSD---SMSRGH---WDNVDKI---LEKGRDWIINEVKASGLRGRGGAGFSTGMKW 66
               L +    ++      W  +       +  RD ++N+++ +G+ G GGAGF T  K 
Sbjct: 99  HPSGLKELCVKIASDGQDAWYPLHPAPDYHQLSRDELLNKIEQAGIAGLGGAGFPTAPKL 158

Query: 67  SFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVR 126
                   D    L++NA E EP    D  +M+     +IEGC +    +      I + 
Sbjct: 159 ----AGGKDAIKTLIINAAECEPYITADDRLMQEHAQEVIEGCRVLQHLLNPDQVLIGIE 214

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK 186
                  ++L+ A+                 D  I +      Y  G    L + L GK+
Sbjct: 215 DNKPEAIKALKLAL--------------TSTDRQIFIRVIPTKYPSGGAKQLTKILTGKE 260

Query: 187 GQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG 246
                     + +G+      + NV ++  +   +  G               ++ +++G
Sbjct: 261 V---PSGARSSQIGV-----LMQNVGTVVAIKRAVIDGQPLI----------ERVVTVTG 302

Query: 247 H-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMD 304
             +  P      +      L+++         ++   VI GG  +   LP   +    + 
Sbjct: 303 DAIKQPGNFWARLGTPVKHLLQQAG----FEPEDEQMVIMGGPLMGFTLPDLNVPVVKIC 358

Query: 305 YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVM 362
              L      +G   +                      E+C +C  C +      + + +
Sbjct: 359 NCLLVPTMEEMGKKPI---------------------EEACIRCGLCVDACPAGLLPQQL 397

Query: 363 ERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
               KG   ++     + +   IE    C    A A+       L++ +R  
Sbjct: 398 YWFSKGDEHEK--AQKHNLFDCIE----CG---ACAYVCPSNIPLVQYYRQE 440


>gi|121997517|ref|YP_001002304.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588922|gb|ABM61502.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 681

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 112/349 (32%), Gaps = 62/349 (17%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           ++  L+   + ++  +  +G+RG GGA F + +K +   +   D    LVVN  E +   
Sbjct: 304 IEAPLQADPEALLRRIGEAGVRGMGGAAFPSALKLADGARSGVD---TLVVNGVECDTYL 360

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  ++R     +I+G  IA+ A GA    + V+                   +     
Sbjct: 361 TCDETLLRMRAAAIIDGARIAARACGAERILVAVKNS--------------APEAAAAAE 406

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
            +    + DI V    G Y  G E  ++    G+      +PP    VG+        NV
Sbjct: 407 AAIEASEADIQVVRVGGDYPAGNERHIVYPTTGRTVPAGARPP---AVGV-----VCQNV 458

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
            ++  +   +  G         E +    +    G +  P      +    + LI +   
Sbjct: 459 STLDAIHRAVHYG---------EPSVERLVTVTGGGIAEPGNYWVRVGTPLNALIGQAG- 508

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                      ++ GG     +   Q+             G  + +A    +     I  
Sbjct: 509 -----TPGCRTIVGGGIMGTPVTDRQV------PLTHGMNGIVVESADEAPLFEQPCI-- 555

Query: 332 AIWRLSVFYKHESCGQCT-PCREGTGWMMRVMERLVKGIAQKREIDLLY 379
                       SCG+C   C EG      +  R+  G+      + + 
Sbjct: 556 ------------SCGRCAEVCPEGL-QPFEMARRIRAGVDVGEAAEHID 591


>gi|238761125|ref|ZP_04622102.1| Cobalamin reductase [Yersinia kristensenii ATCC 33638]
 gi|238761378|ref|ZP_04622354.1| Cobalamin reductase [Yersinia kristensenii ATCC 33638]
 gi|238700352|gb|EEP93093.1| Cobalamin reductase [Yersinia kristensenii ATCC 33638]
 gi|238700605|gb|EEP93345.1| Cobalamin reductase [Yersinia kristensenii ATCC 33638]
          Length = 458

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 95/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K               +VNA E EP    D+ ++  +   L+ G +    A GA 
Sbjct: 41  FPTAVKLQAQAD-------IFLVNAAECEPMLKVDQQLIPRQAARLVRGVLYGMVATGAR 93

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++     +L   +                    I +H     Y  G+E   +
Sbjct: 94  EGIIALKAKYGEAIAALTPLL-----------------PPQIRLHILPDVYPAGDEVITI 136

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P ++G+      VNNV+++  V   + +   W            
Sbjct: 137 WLATGRRVPP---AALPISIGV-----VVNNVQTLLNVARAVEQ--QWPVTR-------- 178

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   +  +  E++    G          A I GG  +    A    
Sbjct: 179 RTLTVNGAVARPLTLTVPLGTSLREVLALAGGVTINNP----AYINGGPMMGH--ALHDL 232

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF---YKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I    R            C QC  C E   
Sbjct: 233 DQPVTKT----------TGGLLVLPASHLLITRRARSDRDVLAIARTVCEQCRMCTELCP 282

Query: 357 W 357
            
Sbjct: 283 R 283


>gi|71907126|ref|YP_284713.1| electron transport complex, RnfABCDGE type, C subunit
           [Dechloromonas aromatica RCB]
 gi|71846747|gb|AAZ46243.1| Electron transport complex, RnfABCDGE type, C subunit
           [Dechloromonas aromatica RCB]
          Length = 503

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 108/346 (31%), Gaps = 64/346 (18%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           +        + I     A+G+ G GGA F    K++   ++       L+VN  E EP  
Sbjct: 120 LADPFSAAPEEITKRTAAAGVVGLGGATFPAAPKFALGKRLK---VSTLIVNGGECEPYL 176

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  IMR  P  +++G  +   AIGA  A +                ++E     +   
Sbjct: 177 SSDDRIMRDYPEMVVDGARLVMHAIGASEALVG---------------IEENKPEAIAAM 221

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                   ++ +      Y  G +  L++ L G +          A  G+      V+NV
Sbjct: 222 RKAAAAFPEVKIRPLPALYPMGSDRQLIKVLTGIEV---PSDARAAETGV-----LVHNV 273

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
            + A V   +R G          N          G +  P  +   +     +L      
Sbjct: 274 STCAAVHKAIRLGQPLVERIITIN---------GGAIANPGNLYAPLGTMIGDLFAFVGL 324

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                 +    +I GG          M G  + +D +       G + ++  + +  ++ 
Sbjct: 325 -----KEAPSRIILGGP---------MMGTPLLHDRIP---IVKGASGILAFNAAEALVP 367

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWM---MRVMERLVKGIAQKRE 374
                        C +C  C +        + +  R+  G  +  E
Sbjct: 368 EA---------GPCIRCGNCTKACPMGLLPLEMAARIRVGDLEGAE 404


>gi|187777437|ref|ZP_02993910.1| hypothetical protein CLOSPO_01004 [Clostridium sporogenes ATCC
           15579]
 gi|187774365|gb|EDU38167.1| hypothetical protein CLOSPO_01004 [Clostridium sporogenes ATCC
           15579]
          Length = 431

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 47/253 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           I++ ++ +G+ G GGAGF T +K              ++ NA E EP    + + + +EP
Sbjct: 83  ILDLIQEAGIVGMGGAGFPTHIK-----MDVDLNGGVVIANAVECEPLLAHNINQIVNEP 137

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             + +G   A  A+ A      ++ + +    SL+  +                 D +I 
Sbjct: 138 ELIYKGLCYAMEAVNASKGIFAIKSKNVEAISSLKNIIK----------------DSNIK 181

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +   +  Y  GEE A++  + GK      + P  AN         V+NVE++A +   + 
Sbjct: 182 IVELSDMYPMGEERAIIREVLGK-LLGTSQLPLEANA-------VVSNVETLAKIAEAVE 233

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNY----PCTVEESMSITFDELIEKHCGGIRGGWD 278
                      +    +K  ++ G +         +   +  T  E+IE   G      +
Sbjct: 234 ----------LKKPVISKNITVVGKLKNGLKSQVFMNVPIGTTVREIIEAAGGIDGEYGE 283

Query: 279 NLLAVIPGGSSVP 291
               +I GG    
Sbjct: 284 ----IILGGPFTG 292


>gi|300871548|ref|YP_003786421.1| RnfABCDGE type electron transport complex subunit C [Brachyspira
           pilosicoli 95/1000]
 gi|300689249|gb|ADK31920.1| electron transport complex, RnfABCDGE type, C subunit [Brachyspira
           pilosicoli 95/1000]
          Length = 435

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 88/260 (33%), Gaps = 39/260 (15%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           +    + +  +++ +G+ G GGA F T +K     K   D    L++N  E EP    D 
Sbjct: 118 MTLSAEEMSKKIQNAGIVGMGGATFPTNVKVDGAAKGNCD---TLIINGVECEPYITSDY 174

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHC-AFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
            +M      L +G  I    I +     I +        E            G +  N  
Sbjct: 175 RLMMEHTEDLFKGIEILRKIIPSVKRTVIGIEANKPLAIE----------EMGKVAKNY- 223

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                ++ V      Y  G E  L+++  G +  P  K P   NV        V NV ++
Sbjct: 224 -----NVEVMPLRLRYPQGAEKMLIDATTG-RVVPVGKLPMDVNV-------LVVNVATL 270

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGI 273
             +          Y    ++     ++ ++SG  +     +   +      ++ +  G I
Sbjct: 271 YAI----------YEAVAKDKPLIERIVTVSGDAIKEHKNIWVPLGTPISHIVNECGGLI 320

Query: 274 RGGWDNLLAVIPGGSSVPCL 293
                 +      G+SVP L
Sbjct: 321 SDDVLVIAGGPMMGASVPNL 340


>gi|54309723|ref|YP_130743.1| electron transport complex protein RnfC [Photobacterium profundum
           SS9]
 gi|46914161|emb|CAG20941.1| putative NADH:ubiquinone oxidoreductase, subunit RnfC
           [Photobacterium profundum SS9]
          Length = 761

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 105/319 (32%), Gaps = 65/319 (20%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
             +I +++ SG+ G GGAGF T  K     +    +   L++NA E EP    D  +M+ 
Sbjct: 134 ADLIEKIRLSGIAGLGGAGFPTSRKL----QGGLGKVDILIINAAECEPYITADDRLMQD 189

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               +I+G  I    +      I +    +    +L+  +                 D  
Sbjct: 190 YAAEVIDGIRILRHIVKPKLTIIGIEDNKLEAITALEKHITN---------------DDH 234

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           II+      Y  G    L++ L G++           +VG+      V NV ++  V   
Sbjct: 235 IIIRVIPTKYPSGSSKQLVKVLTGREV---PSQARSTSVGV-----IVQNVGTVFAVKRA 286

Query: 221 LRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDN 279
           +  G               ++ +++G        V   +      L++ +       +  
Sbjct: 287 IIDGEPLI----------ERVVTLTGEAFQQRGNVFARLGTPISYLLDNYSYQPDKKYPR 336

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR--LS 337
              VI GGS +                 L            + + + T+ I A  R  L 
Sbjct: 337 ---VIIGGSLMGF--------------TLPHAN--------VPITKITNCILAPKRKELP 371

Query: 338 VFYKHESCGQCTPCREGTG 356
           +     +C +CT C E   
Sbjct: 372 LHTHEMACIRCTACAEACP 390


>gi|269791702|ref|YP_003316606.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099337|gb|ACZ18324.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 449

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 112/320 (35%), Gaps = 60/320 (18%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + +++ V+ +G+ G GGAGF T +K              ++VN  E EP    D+ +M  
Sbjct: 2   EDLVSAVRDAGVVGAGGAGFPTHVKL-------GGGCESVLVNGAECEPLLEVDQQLMAL 54

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            P  ++E       ++GA    I ++ ++    E+L   +               G    
Sbjct: 55  YPSRVLEALDAVVRSLGAREGIIGIKDKYREALEALGGEI---------------GGFPS 99

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + +H     Y  G+E  L+    G +  P  +   P  VG+      V NVE++  +   
Sbjct: 100 LRLHVLPNVYPAGDEQVLVYEATG-RIVP--EGGIPLEVGV-----VVLNVETLLNI--- 148

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
                 W +  G       K  ++ G V+ P TV   + ++F E++    G         
Sbjct: 149 ------WGAMRGIPVT--EKYLTVCGEVHRPATVRVPLGVSFGEVVAAVGGSPLKD---- 196

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI---WRLS 337
             VI GG  +  +                       T  +IV+     ++ A     R  
Sbjct: 197 FVVIDGGPMMGRVVRRMDEPVT------------KTTKGLIVLPPDHPLVVAKERDMRSM 244

Query: 338 VFYKHESCGQCTPCREGTGW 357
           +     +C  C  C +    
Sbjct: 245 MSLAKTACCHCMLCTDLCPR 264


>gi|227874303|ref|ZP_03992490.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Oribacterium sinus
           F0268]
 gi|227839854|gb|EEJ50297.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Oribacterium sinus
           F0268]
          Length = 457

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 112/361 (31%), Gaps = 60/361 (16%)

Query: 23  SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
             S   +          R+ I++ V+ +G+ G GGAGF T +K S       D+    +V
Sbjct: 114 YESIPGFGEKRDYHNLSREEIVSIVRDAGIVGLGGAGFPTFVKLS---PKEIDKIDLFLV 170

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           N  E EP    D   M   P  LI G  +           I +        + L   V  
Sbjct: 171 NGAECEPYLTSDYRDMMEMPEKLIGGLQVVLSIFPNAKGKICIEDNKPEAIKLLTEKVKG 230

Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
                            +I V      Y  G E  L+ +  G+K    +    PA+ G  
Sbjct: 231 ---------------MDNIEVVALRTRYPQGGERQLIYAASGRKINSSM---LPADAG-- 270

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSIT 261
                        VV   +    + Y           K+ +++G  V  P      +   
Sbjct: 271 -------------VVVDNVDTVVAIYEAVCESKPLVRKILTVTGDAVASPGNFRVPLGTN 317

Query: 262 FDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
           + ++I    G      +    VI GG  +       +    +  +           ++++
Sbjct: 318 YQQVISAAGG----FSEEPEKVISGGPMMGM--PLFVLDIPVTKNS----------SSIL 361

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQC-TPCREGTGWMMRVMERLVKGIAQKREIDLLYE 380
              +     +A           +CG+C T C E     + ++  L K   +  ++  +  
Sbjct: 362 AFKKDPVAEEATTPCI------NCGRCVTACPENLMPTLMMVASLQKNTERFEKLYGMEC 415

Query: 381 V 381
           +
Sbjct: 416 I 416


>gi|251780525|ref|ZP_04823445.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084840|gb|EES50730.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 442

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 109/318 (34%), Gaps = 57/318 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +G+ G GGAGF T  K        + +  Y+++N  E EP    D+ +M   P
Sbjct: 3   LLDMVKDAGVIGAGGAGFPTHAKL-------ASKAEYILLNGAECEPLLRVDQQLMELFP 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +I+G   A   + A+   I ++G+       L+  ++E +   L            I 
Sbjct: 56  DEIIKGFETARSIVNANKGIIGIKGKHKEVISILRNRINELHVGDL------------IE 103

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           V      Y  G+E  L+  L G+      +   P  VG       V N E+   +     
Sbjct: 104 VKELPDIYPAGDEQVLVYELTGRVV---PEAGIPIQVG-----CVVVNSETALNIYNAS- 154

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                        +   K  +I+G +    TV+  + I    +++    GI    D   +
Sbjct: 155 ----------MGKSVTEKYITIAGDIPNRKTVKVPVGIPIIYVLKL--SGIENFDD--YS 200

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AIWRLSVF 339
           VI GG  +  +                           +++     +I+        +  
Sbjct: 201 VIDGGPMMGPVMKNLDGYVTKK------------NKGFVILKNDHPLIRKKSVTMNQAKK 248

Query: 340 YKHESCGQCTPCREGTGW 357
               SC QC  C +    
Sbjct: 249 INKSSCEQCRMCTDMCPR 266


>gi|154502540|ref|ZP_02039600.1| hypothetical protein RUMGNA_00353 [Ruminococcus gnavus ATCC 29149]
 gi|153796936|gb|EDN79356.1| hypothetical protein RUMGNA_00353 [Ruminococcus gnavus ATCC 29149]
          Length = 438

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 101/321 (31%), Gaps = 62/321 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E  ++ II  +  +G+ G GGAGF T +K S      +D+  Y++ N  E EP    D  
Sbjct: 118 ELTKEEIIERISEAGVVGMGGAGFPTKVKLS---PKEADKIEYIIANGAECEPYITADYR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M      ++ G  +             V        E L+ A+                
Sbjct: 175 RMMECTREIVSGMEVVLSLFPNAEGIFAVEDNKKDCVEKLKEAIAG-------------- 220

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + V      Y  G E  L+ +   +     +    PA+ G       V+NVE++  
Sbjct: 221 -KSRMSVKVLETKYPQGAERQLIYATTKRAIHAAM---LPADAG-----CIVDNVETLIA 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +R G               ++ ++SG  +  P      + +   EL++   G    
Sbjct: 272 INQAVRFG----------KPLMERVVTVSGDDIQNPGNFRVPIGMNHRELVDAAGG---- 317

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  +I GG  +    A     A +              ++++   +          
Sbjct: 318 FITEPQKLISGGPMMGF--AMVTLDAPVTKTS----------SSILAFQKDE-------- 357

Query: 336 LSVFYKHESCGQCTPCREGTG 356
            +   K  +C  C  C E   
Sbjct: 358 -AAEAKETACINCGRCVEVCP 377


>gi|220904811|ref|YP_002480123.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869110|gb|ACL49445.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 618

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 50/103 (48%)

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           + +G   ++V D + D++  +         ESCGQC PCR G   +   ++ L +G A+ 
Sbjct: 18  AFMGWGGLVVSDETVDVLDMLRAYYEGAAAESCGQCFPCRSGLKRIAERLDSLCRGKARP 77

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            + + L E++  +     C +G  +  P+  ++ +   L+E R
Sbjct: 78  DDREYLQELAALVYDSARCDIGQTSPQPLLDVLAHAPHLLEAR 120


>gi|283478477|emb|CAY74393.1| Electron transport complex protein rnfC [Erwinia pyrifoliae DSM
           12163]
          Length = 659

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 127/389 (32%), Gaps = 78/389 (20%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +D  L   R  ++  V  +G+ G GGAGF T  K     +  +     L++NA E EP
Sbjct: 122 QPLDDYLRVDRAELVARVHQAGVAGLGGAGFPTATKLKGGLRGVN----TLIINAAECEP 177

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     ++EG  I ++ + A    I +     +   +L+ A+         
Sbjct: 178 YITADDRLMQDCAAEVLEGSRILAWILQADRVLIGIEDNKPQAITALRKALGNAT----- 232

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     D+ +      Y  G    L + L GK+           ++G+      + 
Sbjct: 233 ----------DLQIRVIPTKYPSGGAKQLTKILTGKEV---PHGGRSTDIGV-----LMQ 274

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEK 268
           NV +   V   +  G               ++ +++G  V  P  V   +      L++ 
Sbjct: 275 NVGTAFAVKRAIIDGEPLT----------ERVVTLTGESVTQPGNVWARLGTPISHLLQH 324

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                         V+ GG  +   LP   +    +    L    S +G  A        
Sbjct: 325 AG----FTPGAEQMVVMGGPLMGFTLPTLDVPVVKITNCILAPAASEMGQNA-------- 372

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNI 385
                          ++C +C+ C +      + + +    +G   ++     + ++  I
Sbjct: 373 -------------AEQNCIRCSACADACPAALLPQQLYWFSRGGDHEK--ARAHNIADCI 417

Query: 386 EGRTICALGDAAAWPIQG---LIKNFRPL 411
           E    C    A A+       L++ +R  
Sbjct: 418 E----CG---ACAYVCPSNIPLVQYYRQE 439


>gi|188585178|ref|YP_001916723.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349865|gb|ACB84135.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 438

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 107/354 (30%), Gaps = 60/354 (16%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
             I +   D + + ++ +G+ G GGA F T     ++    S     L++N  E EP   
Sbjct: 112 KNIEDMSLDDMKDRIREAGVVGMGGAAFPT-----YVNINQSKPIDSLLINGAECEPFLT 166

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D   M      L+ G  I    IGA   +  +        +++   ++        G +
Sbjct: 167 CDHRQMVERSEELVIGAEILMNIIGAKKCYFGIEENKPDAIDAVSKQIE--------GKD 218

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                   + V      Y  G +  ++ +  G+   PR      A++G       V NV 
Sbjct: 219 G-------MEVVPLKTKYPQGYKVNVIHACTGRD-VPRG--VRSADLG-----CIVRNVG 263

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCG 271
           +       ++ G               ++ ++SG ++         +    + ++ +   
Sbjct: 264 TTIATYEAVKYG----------KPLMERVVTVSGYNIPEAGNYNIKIGTPVEHVLRECGV 313

Query: 272 GIRGGWDNLLAVIPGGSSVP--------------CLPAGQMRGAIMDYDGLKEMGSGLGT 317
                   +L     G++V                 P         DY+     G  +  
Sbjct: 314 DNFENQKVILGGPMTGTAVKDIRSSVVKNSTGLLLFPEDMTWD-YTDYNECVRCGKCVER 372

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHE----SCGQCTPCREGTGWMMRVMERLVK 367
             V +      +     + S     E     CG+C  C         ++  + +
Sbjct: 373 CPVHLYPNKIGMYAEHKQYSK--AEEWDIMDCGECGTCVYFCPANRPILMWIQQ 424


>gi|123442959|ref|YP_001006934.1| putative NADH dehydrogenase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089920|emb|CAL12777.1| putative NADH dehydrogenase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 453

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 95/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     +         +VNA E EP    D+ ++  +   L+ G +      GA 
Sbjct: 36  FPTAVKLQAQAE-------IFLVNAAECEPMLKVDQQLIPRQAARLVRGVLYGMKTTGAC 88

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++     +L   +                    I +H     Y  G+E   +
Sbjct: 89  EGIIALKAKYSEAIAALTPLL-----------------PPQIRLHILPDVYPAGDEVITI 131

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P ++G+      VNNV+++  V   + +   W            
Sbjct: 132 WLATGRRVPP---AALPISIGV-----VVNNVQTLLNVARAVEQ--QWPVTR-------- 173

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   +  +  E++    G          A I GG  +       + 
Sbjct: 174 RTLTVNGAVARPLTLTVPLGTSLREVLALAGGATINNP----AYINGGPMMG----HTLH 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL---SVFYKHESCGQCTPCREGTG 356
                            T  ++V+  S  +I    R     +      C QC  C E   
Sbjct: 226 DLDQPVT--------KTTGGLLVLPASHLLIARRARSDKDVLAIARTVCEQCRMCTELCP 277

Query: 357 W 357
            
Sbjct: 278 R 278


>gi|224369753|ref|YP_002603917.1| GltD1 [Desulfobacterium autotrophicum HRM2]
 gi|223692470|gb|ACN15753.1| GltD1 [Desulfobacterium autotrophicum HRM2]
          Length = 659

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 4/123 (3%)

Query: 304 DYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
           +++    + +  G     V ++  +++ A+ +       ESCG+CTPCR GT  +   +E
Sbjct: 35  EFNAGNPIKAFFGGHGFFVFEKKVNLLDALLQYMERVAKESCGKCTPCRVGTQIIRHKLE 94

Query: 364 RLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ----Y 419
            LV   A    +D +  +++++   ++C LG  A   +  ++ +FR  +   +       
Sbjct: 95  DLVNRKADAEALDEIAVIAEHVRDTSLCGLGQTATVALLEVLAHFREELVAELSTPAPVR 154

Query: 420 HRC 422
            RC
Sbjct: 155 QRC 157


>gi|56413045|ref|YP_150120.1| ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197361969|ref|YP_002141606.1| ferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56127302|gb|AAV76808.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093446|emb|CAR58904.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 442

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 100/301 (33%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   L+ G + A  A GA 
Sbjct: 25  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMWQQAARLVRGVLYAMTATGAR 77

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I  + ++ R  +    A+     +G             I +H     Y  G+E   +
Sbjct: 78  EGVIAPKEKYRRAID----ALTPLLPAG-------------IRLHILPDVYPAGDEVLTI 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      PA+VG+      VNNV+++  +   + +                
Sbjct: 121 WMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR---------- 162

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I  G  +  L      
Sbjct: 163 RTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDNP----GFINDGPMMGGLITS--L 216

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 217 DNPVTKT----------TGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 266

Query: 357 W 357
            
Sbjct: 267 R 267


>gi|253579539|ref|ZP_04856808.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849040|gb|EES77001.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 451

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 100/302 (33%), Gaps = 62/302 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T MK +       D+ + +++N  E EP     R ++    + +++   +    +GA 
Sbjct: 32  FPTYMKLT-------DKANTILMNCAECEPLLKLHRQLLEKHAYEIMKTFHMIQETVGAS 84

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++  +++   +L   ++E                  + +H     Y  G+E  L+
Sbjct: 85  EAIIGIKKSYVQTIHALNQHIEEFPG---------------MRLHLLDEVYPMGDEVVLI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G+  +P      P   G+      V NVE++  V   +            E    T
Sbjct: 130 YEATGRVVRP---GGLPIEQGV-----AVFNVETVYNVYRAVE-----------EKQPVT 170

Query: 240 -KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
            K  S+   V+ P TV   +  T +E++ +                 GG  +  +  G  
Sbjct: 171 DKYVSVVAEVSDPVTVRVPLGCTLEEVVAQAGSTTVKDP----VYFVGGPMMGRIGNGSD 226

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV---FYKHESCGQCTPCREGT 355
                             T A++V+ +   I+    R S          C QC  C +  
Sbjct: 227 PVT-------------KTTNAILVLPKDHLIVAKKQRTSSIDLKRAASICCQCNTCTDLC 273

Query: 356 GW 357
             
Sbjct: 274 PR 275


>gi|331086677|ref|ZP_08335754.1| hypothetical protein HMPREF0987_02057 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409843|gb|EGG89278.1| hypothetical protein HMPREF0987_02057 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 438

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 86/252 (34%), Gaps = 48/252 (19%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
             V  +G+ G GGAGF T +K S           Y++VNA E EPG C +   +  +   
Sbjct: 80  EMVAYAGITGMGGAGFPTAVKLS-----ADLHGGYILVNAAECEPGLCHNIRQIEEQCDK 134

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164
           +I G         A  A   ++ +  +    L+ A+ E                  I +H
Sbjct: 135 IIRGVKYCMELTNASKAIFAIKKKNEKAVRVLKEALKEEEG---------------ITLH 179

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT----TVNNVESIAVVPTI 220
                Y  GEE A++    G              +G+   PT     V NVE+++ V   
Sbjct: 180 LLPDIYPMGEERAVVRECLG------------VELGVDQLPTAADAVVINVETVSRVAEA 227

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV-EESMSITFDELIEKHCGGIRGGWDN 279
           +      +       ++   +         P    +  +  +  ELIE+  G      + 
Sbjct: 228 IDERKPCF-------SKNVTVVGKLNGGEEPHVFLDVPIGTSIGELIERAGGINGIYGE- 279

Query: 280 LLAVIPGGSSVP 291
              +I GG    
Sbjct: 280 ---IIVGGPFTG 288


>gi|260893625|ref|YP_003239722.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
 gi|260865766|gb|ACX52872.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
          Length = 270

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 11/163 (6%)

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG----------QMRGAIMDYDGLKEMG 312
             L+E             ++   G      +             ++ GA  D+D L +  
Sbjct: 89  KRLVELFGIEPERIRLEWISAAEGARFGAVVTEFTEQIRALGPIKVDGAPTDWDELGKAA 148

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
           S LG+A  + +D S  ++  +     + + ESC +C PC  GT +++ ++  L  G A  
Sbjct: 149 SVLGSAGKVFLDESVSMVDIVRYFMEYVQQESCAECRPCPIGTKFILDLLNDLGNGGAMP 208

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEER 415
            +  L+ E+++ I+  + C LG  A    + L + F   +E  
Sbjct: 209 -DSSLVKELARTIKQGSKCGLGRVAGLITEKLWERFYDELEAY 250


>gi|295109917|emb|CBL23870.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           obeum A2-162]
          Length = 440

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 117/343 (34%), Gaps = 58/343 (16%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +     + +  ++ I+N +K  G+ G GGAGF T +K    PK  S +  Y++VN  E E
Sbjct: 110 YQETR-LEDLTKEEILNRIKEGGVVGMGGAGFPTHVK--LAPKDPS-KIEYILVNGAECE 165

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M  EP  +++G  +      +   +I +          ++  V +      
Sbjct: 166 PYITSDYRRMIEEPDKVVKGLQVILTLFDSAKGYICIEDNKPDCIAKMKELVKDID---- 221

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                       I V      Y  G E  L+ +  G++         PA+VG       V
Sbjct: 222 -----------RIEVKEVMTKYPQGGERTLIYAATGREIN---SGMLPADVG-----CVV 262

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NVE++  V   +  G              +++ ++SG  +  P  +         ELI+
Sbjct: 263 DNVETVISVYKAVILG----------RPVNSRVVTMSGDGIKEPKNLLVLSGTDMSELID 312

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              G        +   I GG  +    A                     T+A + ++   
Sbjct: 313 AAGGLKA----KIAKAISGGPMMGF--ALYDLHVPCTKT----------TSAFLFLE--H 354

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
           D +     +       +CG+C     G     R+ +   +G  
Sbjct: 355 DAVSEAQEIQ--TACINCGRCVSVCPGHVLPARLAKLAERGDM 395


>gi|188587977|ref|YP_001920776.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188498258|gb|ACD51394.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 442

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 109/318 (34%), Gaps = 57/318 (17%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +G+ G GGAGF T  K        + +  Y ++N  E EP    D+ +M   P
Sbjct: 3   LLDMVKDAGVIGAGGAGFPTHAKL-------ASKAEYTLLNGAECEPLLRVDQQLMELFP 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +I+G   A   + A+   I ++G+       L+  ++E +   L            I 
Sbjct: 56  DEIIKGFETARSIVDANKGIIGIKGKHKEVISILRNRINELHVGDL------------IE 103

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           V      Y  G+E  L+  L G+      +   P  VG       V N E+   +     
Sbjct: 104 VKELPDIYPAGDEQVLVYELTGRVV---PEAGIPIQVG-----CVVVNSETALNIYNAS- 154

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                        +   K  +I+G +    TV+  + I   ++++    GI    D   +
Sbjct: 155 ----------MGKSVTEKYITIAGDIPNRKTVKVPVGIPIIDVLKL--SGIENFDD--YS 200

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AIWRLSVF 339
           VI GG  +  +                           +++     +I+        +  
Sbjct: 201 VIDGGPMMGPVMKNLDGYVTKK------------NKGFVILKNDHPLIRKKSVTMNQAKK 248

Query: 340 YKHESCGQCTPCREGTGW 357
               SC QC  C +    
Sbjct: 249 INKSSCEQCRMCTDMCPR 266


>gi|330446485|ref|ZP_08310137.1| electron transport complex, RnfABCDGE type, C subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490676|dbj|GAA04634.1| electron transport complex, RnfABCDGE type, C subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 852

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 106/323 (32%), Gaps = 65/323 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++    +I+ ++ +G+ G GGAGF T  K     +        L++NA E EP    D  
Sbjct: 130 DRDPAELIDAIRLNGIAGLGGAGFPTARKL----QGGLGNVDILIINAAECEPYITADDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +IEG  I    I      I +        ++L+  V E              
Sbjct: 186 LMRDYAEEVIEGVRILRHIISPKLTIIGIEDNKPEAIKALEQHVKE-------------- 231

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D +I++      Y  G    L++ L G++           +VG+      + NV +   
Sbjct: 232 -DDNILIRVVPTKYPSGSSKQLVKILTGREV---PSQSRSTSVGV-----IMQNVGTAFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G        V   +      L++K     + 
Sbjct: 283 IKRAIIDGEPLI----------ERVVTLTGEAFKERGNVFAMLGTPIAYLLDKFS--YKA 330

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
              +   +I G      LP                          + + + T+ I A  R
Sbjct: 331 DKKHPRVIIGGSLMGFTLPHSN-----------------------VPITKMTNCILAPKR 367

Query: 336 --LSVFYKHESCGQCTPCREGTG 356
             L +     +C +C+ C +   
Sbjct: 368 KELPLHTYEMACIRCSACADVCP 390


>gi|259908517|ref|YP_002648873.1| Electron transport complex protein [Erwinia pyrifoliae Ep1/96]
 gi|224964139|emb|CAX55646.1| Electron transport complex protein [Erwinia pyrifoliae Ep1/96]
          Length = 595

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 127/389 (32%), Gaps = 78/389 (20%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +D  L   R  ++  V  +G+ G GGAGF T  K     +  +     L++NA E EP
Sbjct: 122 QPLDDYLRVDRAELVARVHQAGVAGLGGAGFPTATKLKGGLRGVN----TLIINAAECEP 177

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     ++EG  I ++ + A    I +     +   +L+ A+         
Sbjct: 178 YITADDRLMQDCAAEVLEGSRILAWILQADRVLIGIEDNKPQAITALRKALGNAT----- 232

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     D+ +      Y  G    L + L GK+           ++G+      + 
Sbjct: 233 ----------DLQIRVIPTKYPSGGAKQLTKILTGKEV---PHGGRSTDIGV-----LMQ 274

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEK 268
           NV +   V   +  G               ++ +++G  V  P  V   +      L++ 
Sbjct: 275 NVGTAFAVKRAIIDGEPLT----------ERVVTLTGESVTQPGNVWARLGTPISHLLQH 324

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                         V+ GG  +   LP   +    +    L    S +G  A        
Sbjct: 325 AG----FTPGAEQMVVMGGPLMGFTLPTLDVPVVKITNCILAPAASEMGQNA-------- 372

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNI 385
                          ++C +C+ C +      + + +    +G   ++     + ++  I
Sbjct: 373 -------------AEQNCIRCSACADACPAALLPQQLYWFSRGGDHEK--ARAHNIADCI 417

Query: 386 EGRTICALGDAAAWPIQG---LIKNFRPL 411
           E    C    A A+       L++ +R  
Sbjct: 418 E----CG---ACAYVCPSNIPLVQYYRQE 439


>gi|189346514|ref|YP_001943043.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           limicola DSM 245]
 gi|189340661|gb|ACD90064.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           limicola DSM 245]
          Length = 441

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 111/360 (30%), Gaps = 71/360 (19%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            W  + K      + I+  +  SG+ G GGAGF +G+K S       D    +++N  E 
Sbjct: 115 DWKKLSK------EEILKRITDSGIVGMGGAGFPSGVKLSPPKDKTID---TIILNGAEC 165

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAI-GAHCAFIYVRGEFIRERESLQAAVDECYAS 146
           EP    D  +M  EP  +I+G  I +    G   A+I +         +L+    +  + 
Sbjct: 166 EPFLTADHRVMVEEPEAIIKGLEIITSLFQGKVSAYIGIESNKPDAVAALKK---QADSK 222

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
           G             I +      Y  G E  L+ ++ G+      +   P + G      
Sbjct: 223 G-------------IGIVVLETKYPQGAEKQLINAITGRTVN---EGELPFDKG-----C 261

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC-TVEESMSITFDEL 265
            V+N+ +   +   +           +      ++ +ISG   +    +   +   F E 
Sbjct: 262 LVHNIATAIAMYEAVC----------KNKPLIERVVTISGMEIHTARNIRILVGTKFSE- 310

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDG----LKEMGSGLGTAAVI 321
           I   CG +    +    VI GG  +    A       +                 +    
Sbjct: 311 IAAFCGSMT---EKTNQVITGGPMMG--KAQFSLDVPVTKTTSGILFINNRGLEKSGEKT 365

Query: 322 VMDRSTDIIKAIWRL----------------SVFYKHESCGQCTPCREGTGWMMRVMERL 365
            +  S  I      L                   Y   +C +C  C         ++  +
Sbjct: 366 CIRCSRCISACPQNLQPWLLANTAQLRDFETIELYGMANCTECGSCSYVCPSKRELVHWI 425


>gi|226941247|ref|YP_002796321.1| oxidoreductase [Laribacter hongkongensis HLHK9]
 gi|226716174|gb|ACO75312.1| Possible oxidoreductase [Laribacter hongkongensis HLHK9]
          Length = 743

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 6/141 (4%)

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
           WD+ +     G     LP   +      +     +   +     +V D +  ++ A  + 
Sbjct: 82  WDDRVYDCRNGQDASPLPVSGLEQ----FAPDNPVRVFVADRGFLVFDPAASLVDAFRQY 137

Query: 337 SVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDA 396
                 ESCG+C PCR GT  ++  +E L +G    R +  + E++  +   ++C LG  
Sbjct: 138 MQRAVDESCGKCAPCRIGTRKLLDELEALQRGKLTDRSLPTILELASLVAESSLCGLGRT 197

Query: 397 AAWPIQGLIKNFRPLI--EER 415
               +   I++F  +   E R
Sbjct: 198 CTLALAAAIRHFPEVFAAEAR 218


>gi|238757164|ref|ZP_04618351.1| Cobalamin reductase [Yersinia aldovae ATCC 35236]
 gi|238704542|gb|EEP97072.1| Cobalamin reductase [Yersinia aldovae ATCC 35236]
          Length = 460

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 96/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     +         +VNA E EP    D+ ++  +   L+ G +    A GA 
Sbjct: 43  FPTAVKLQAQAE-------IFLVNAAECEPMLKVDQQLIPRQAARLVRGVLYGMKATGAG 95

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++     +L   +                    I +H     Y  G+E   +
Sbjct: 96  EGIIALKAKYEEAIAALTPLL-----------------PPQIRLHILPDVYPAGDEVITI 138

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P      P ++G+      VNNV+++  V   + +   W            
Sbjct: 139 WLATGRRVPP---AALPISIGV-----VVNNVQTLLNVARAVEQ--QWPVTR-------- 180

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   +  +  E++    G          A I GG  +    A    
Sbjct: 181 RTLTVNGAVARPLTLTVPLGTSLREVLALASGATINNP----AYINGGPMMGH--ALHDL 234

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL---SVFYKHESCGQCTPCREGTG 356
              +             T  ++V+     +I    R     +      C QC  C E   
Sbjct: 235 DQPVTKT----------TGGLLVLPADHLLITRRARSDKDVLAIARTVCEQCRMCTELCP 284

Query: 357 W 357
            
Sbjct: 285 R 285


>gi|90412116|ref|ZP_01220122.1| electron transport complex protein RnfC [Photobacterium profundum
           3TCK]
 gi|90326840|gb|EAS43225.1| electron transport complex protein RnfC [Photobacterium profundum
           3TCK]
          Length = 930

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 106/322 (32%), Gaps = 63/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
            +    +I +++ SG+ G GGAGF T  K     +    +   L++NA E EP    D  
Sbjct: 130 AEESADLIEKIRLSGIAGLGGAGFPTSRKL----QGGLGKVDILIINAAECEPYITADDR 185

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     +I+G  I    +      I +     +   +L+  V +              
Sbjct: 186 LMQDYAAEVIDGIRILRHIVKPKLTIIGIEDNKPKAITALEKHVTK-------------- 231

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  II+      Y  G    L++ L G++           +VG+      V NV +   
Sbjct: 232 -DDHIIIRVIPTKYPSGSSKQLVKVLTGREV---PSQARSTSVGV-----VVQNVGTAFA 282

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +  G               ++ +++G        V   +      L++ +      
Sbjct: 283 VKRAIIDGEPLI----------ERVVTLTGEAFQQRGNVFARLGTPISYLLDNYSYQPDK 332

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
            +     VI GGS +                        L  A V V   +  I+    +
Sbjct: 333 KYPR---VIIGGSLMGF---------------------TLPHADVPVTKVTNCILAPKRK 368

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
               + HE +C +CT C E   
Sbjct: 369 ELPLHTHEMACIRCTACAEACP 390


>gi|269468925|gb|EEZ80509.1| electron transport complex protein RnfC [uncultured SUP05 cluster
           bacterium]
          Length = 502

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 107/325 (32%), Gaps = 74/325 (22%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      +I  ++ SG+ G GGAGF T  K   + +      H L++N  E EPG   D 
Sbjct: 120 LHCDTSTMIEYIRISGIVGLGGAGFPTHTK---VARAQD--CHTLIINGTECEPGVMCDD 174

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +M++ P  +I G  I     GA  A I V  +      S            LL  N   
Sbjct: 175 ALMQYYPREVIRGVEILLHICGASRAIIAVENDKQEAFNS------------LLMYN--- 219

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
            ++  I + H    Y  G E  L+++L G +        F  ++G+        NV +  
Sbjct: 220 -HNERISIVHIPTKYTSGAEKLLIKALLGVEV---PSGGFAPDLGV-----VCQNVATTK 270

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            +          +          +++ +++G  V  P   E  +  +FD +I        
Sbjct: 271 AI----------FDAVVESKPLVSRIVTVTGSGVEKPNNFEVRLGSSFDHVI-------- 312

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT---AAVIVMDRSTDIIK 331
                                  M         ++  G  +G       + + + T+ I 
Sbjct: 313 ----------------------AMSQPNKRSHDIRMGGMMMGVDVKDGKVPICKITNGIF 350

Query: 332 AIWRLSVFYKHESCGQCTPCREGTG 356
              +       E C +C  C +   
Sbjct: 351 VNDQSKKPAAQE-CIRCGACNQVCP 374


>gi|225568090|ref|ZP_03777115.1| hypothetical protein CLOHYLEM_04163 [Clostridium hylemonae DSM
           15053]
 gi|225163043|gb|EEG75662.1| hypothetical protein CLOHYLEM_04163 [Clostridium hylemonae DSM
           15053]
          Length = 439

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 105/329 (31%), Gaps = 62/329 (18%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +     + E  ++ I+N +  +G+ G GGAGF T +K S       D+  Y++ N  E E
Sbjct: 110 YKPAKPLDEMTKEDILNAIGEAGVVGMGGAGFPTRVKLS---PKEPDKIDYIIANCAECE 166

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D   M   P  L+ G  I             V        E L+           
Sbjct: 167 PYITADYRRMLETPEKLVGGMKIVLKLFDNAKGIFGVEDNKPDCIEKLRE---------- 216

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
           L  +        + V      Y  G E  L+ +  G+          PA+ G       V
Sbjct: 217 LTKDEP-----RMEVLALKTKYPQGGERQLIYATTGRAIN---SAMLPADAG-----CVV 263

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
           +NVE++  +   +  G               ++ ++SG  VN P   +        EL+E
Sbjct: 264 DNVETMINIYQAVAEG----------RPSIDRVVTVSGDAVNEPGNFKVLFGTNQAELVE 313

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
              G      +    VI GG  +    +       +              ++++ + +  
Sbjct: 314 AAGG----FKEEPEKVISGGPMMGF--SMFTLDVPITKT----------NSSILCLTKD- 356

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTG 356
              +        Y+  +C  C  C E   
Sbjct: 357 ---EVAK-----YEPTACINCGRCVEACP 377


>gi|313900436|ref|ZP_07833929.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp. HGF2]
 gi|312954498|gb|EFR36173.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium sp. HGF2]
          Length = 610

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +I        +            ++CG+C PCR G   +  ++E +++G A    IDL+ 
Sbjct: 27  IIASPPGLCPVDMASAFLKLCHAQTCGKCVPCRIGLAQLQMLLEDVLEGRAALSTIDLIE 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           + ++NI     CA+G  AA  +   ++ FR   EE I  + RC 
Sbjct: 87  KTAQNISWSADCAIGQEAADMVLKGVQGFRDDYEEHIL-HGRCT 129


>gi|257126678|ref|YP_003164792.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           buccalis C-1013-b]
 gi|257050617|gb|ACV39801.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           buccalis C-1013-b]
          Length = 458

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 96/317 (30%), Gaps = 67/317 (21%)

Query: 48  KASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIE 107
           + +G+   GGA F T +K+    K         ++N  E EP    D  +M++    ++ 
Sbjct: 153 REAGIVELGGAQFPTHIKYDIKFKK----VETFIINGAECEPYLTSDYSLMKNFTKEILN 208

Query: 108 GCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGA 167
           G  +    +      I +  E     +  +   +                 V++ +    
Sbjct: 209 GIKVIEKLLNPKEIVIGIENENSNLVQKFE---ELAKEE-----------KVNLKIKLLP 254

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
             Y  G E  L+ ++ GKK +   K   P N G+      V+NV ++  +      G   
Sbjct: 255 TIYPQGSELQLINTVTGKKVK---KGELPLNQGV-----IVSNVGTVKAIYDAFFEGKPL 306

Query: 228 YSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
                       ++ +ISG         +  +      ++ +              VI G
Sbjct: 307 V----------ERIITISGEEAKNIGNYKVKIGTPLYHIVNELG------IKKEEKVIFG 350

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G  +           I             GT+ ++ + +               + ESC 
Sbjct: 351 GPMMGIEVFDSRIPVI------------KGTSGILFLSK------------EEIERESCI 386

Query: 347 QCTPCREGTGWMMRVME 363
            C  C E     +   E
Sbjct: 387 SCGYCVEACPMNLMPFE 403


>gi|212711765|ref|ZP_03319893.1| hypothetical protein PROVALCAL_02840 [Providencia alcalifaciens DSM
           30120]
 gi|212685287|gb|EEB44815.1| hypothetical protein PROVALCAL_02840 [Providencia alcalifaciens DSM
           30120]
          Length = 636

 Score = 91.2 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 107/359 (29%), Gaps = 77/359 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K         D    L++NA E EP    D  +M+     +IEGC +    +   
Sbjct: 152 FPTASKL----AGGKDAIKTLIINAAECEPYITADDRLMQEHAQEVIEGCRVLQHLLNPD 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+                 D  I +      Y  G    L 
Sbjct: 208 QVLIGIEDNKPEAIRALKRAL--------------TSIDKQIFIRVIPTKYPSGGAKQLT 253

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          + +G+      + NV +   +   +  G               
Sbjct: 254 KILTGKEV---PSGARSSQIGV-----LMQNVGTAVAIKRAVIDGQPLI----------E 295

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  +  P      +      L+++         +N   VI GG  +   LP   
Sbjct: 296 RVVTVTGEAIKQPGNFWTRLGTPVKHLLQQSG----FEPENEQMVIMGGPLMGFTLPDLN 351

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG- 356
           +    +    L      +G   V                      E+C +C  C +    
Sbjct: 352 VPVVKICNCLLVPTQEEMGKKPV---------------------EEACIRCGLCVDACPA 390

Query: 357 -WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             + + +    KG   ++     + +   IE    C    A A+       L++ +R  
Sbjct: 391 SLLPQQLYWFSKGKEHEK--AQKHNLFDCIE----CG---ACAYVCPSNIPLVQYYRQE 440


>gi|150018856|ref|YP_001311110.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149905321|gb|ABR36154.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Clostridium beijerinckii NCIMB 8052]
          Length = 441

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 109/318 (34%), Gaps = 60/318 (18%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
            I+ +K +G+ G GGAGF T +K +        +   ++VN  E EP    D+ +M  + 
Sbjct: 5   FIDLIKDAGIIGAGGAGFPTHVKLNA-------KVKTVIVNGAECEPLLKVDQQLMDKKA 57

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             ++           +    I ++G++     +L + + +                  + 
Sbjct: 58  DEILYALNKVVDETESEVGIIALKGKYKSAINTLNSKIKD---------------YPKLQ 102

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +      Y  G+E  L+  +  K   P    P    V        V NVE++  V   + 
Sbjct: 103 LFMLENFYPAGDEQILVYEVTNK-IVPEGGIPLNVEV-------IVINVETLLNVYNAI- 153

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
            G               K  +I+G V  P TV+  + I+ +E IE   G           
Sbjct: 154 NGIPVT----------EKYLTITGEVKNPITVKVPIGISIEEAIEIAGGSSISD----FC 199

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY-- 340
           VI GG  +  +          +            T  +IV+ +   I+++  +       
Sbjct: 200 VIDGGPMMGKIVEDIQSPIKKN------------TKGLIVLKKEHKIVQSKIKSIQATIR 247

Query: 341 -KHESCGQCTPCREGTGW 357
               +C QC+ C E    
Sbjct: 248 DARIACCQCSLCTEVCPR 265


>gi|291614849|ref|YP_003525006.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291584961|gb|ADE12619.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 567

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 95/311 (30%), Gaps = 62/311 (19%)

Query: 47  VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLI 106
           ++ +G+ G GGA F + MK          +   LV+N  E EP    D  +MR     ++
Sbjct: 130 LRQAGVVGLGGAVFPSDMK----SYSHKHKIRTLVLNGAECEPYITCDDMLMRERAGDIL 185

Query: 107 EGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHG 166
            G  +    + A    I +         ++Q AV     +              + V   
Sbjct: 186 RGAEVLRELLYAEEVLIGIEDNKPEAIAAMQQAVLGDKHA-------------HMEVIAV 232

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
              Y  G    L+  L G +            +G+        NV +   V         
Sbjct: 233 PTLYPGGGAKQLIRVLTGIEV---AAGVRSTEMGV-----QCFNVATAYCV--------- 275

Query: 227 WYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
            +          +++ +++G+V +    E  +    DEL+ +          +    I G
Sbjct: 276 -WRAITYGEPLLSRIVTVTGNVEHAQNFEVLLGTPVDELVAQAG-----SKPDTERHIMG 329

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SC 345
           G  +                          + +V V   +  II+A  RL         C
Sbjct: 330 GPMMGV-------DLP--------------SGSVGVTKATNCIIEASSRLFPPPPPALPC 368

Query: 346 GQCTPCREGTG 356
            +CT C +   
Sbjct: 369 IRCTRCADVCP 379


>gi|160943823|ref|ZP_02091054.1| hypothetical protein FAEPRAM212_01321 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444997|gb|EDP22000.1| hypothetical protein FAEPRAM212_01321 [Faecalibacterium prausnitzii
           M21/2]
          Length = 444

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 108/363 (29%), Gaps = 71/363 (19%)

Query: 24  MSRGHWDNVDKILE----KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           +       VD  ++      +   +  V+  GL G GGAGF T +K              
Sbjct: 106 IKTDGKQTVDPAVKAPEVTDKASFLAAVRECGLVGLGGAGFPTDVKL-----QPKQSVDT 160

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L++NA E E     D   M      +I G        G     I +        + L   
Sbjct: 161 LLINASECEVWLTSDTQEMLEYSDDIIRGIKAVLQYTGIPKCIIGIENNKPECIDLLCK- 219

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                         K   D  I V      Y  G E  L+E   G++         PA+ 
Sbjct: 220 --------------KTKDDSTIEVKPLPSVYGTGAELILIEKCLGREV---PHGGLPADA 262

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESM 258
           G       V NV S++ +   L  G               +  ++ G     P  V   +
Sbjct: 263 G-----AIVMNVTSVSTLGKYLATGMPVVQ----------RTITVDGDACAKPQNVVVPV 307

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
              + ++++                   G     +  G M G  ++        +   T+
Sbjct: 308 GTAYQDILDYVG--------------VKGELGKVVAGGAMMGPAVENLSYP---TTKTTS 350

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            +I++ ++          +   +   C +C  C E     +  +E  V      R++  L
Sbjct: 351 GLILLSKAA---------AQPAQVNPCIRCGRCVEYCPMGLEPVE--VNQAYAARDVQEL 399

Query: 379 YEV 381
            ++
Sbjct: 400 GKL 402


>gi|253578711|ref|ZP_04855982.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849654|gb|EES77613.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 438

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 103/317 (32%), Gaps = 57/317 (17%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
            ++ +  ++ I+  +K  G+ G GGAGF T +K   +     D+  +++VN  E EP   
Sbjct: 113 ARLEDLSKEEILARIKEGGVVGMGGAGFPTQVK---LAPKEPDKIDHILVNGAECEPYLT 169

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D   M  +   LIEG  +          +I +          L+  V +          
Sbjct: 170 SDYRRMLDDSEKLIEGLRVMLKLFDNAKGYICIEDNKPDCIAKLKEMVKDI--------- 220

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                   I V      Y  G E  L++++  ++         PA+ G       V+NV+
Sbjct: 221 ------PRIEVAELMTKYPQGGERFLIKAVTDREIN---SAMLPADAG-----CVVDNVD 266

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           ++  V   +  G            +G         +  P   +        ELIE   G 
Sbjct: 267 TVIAVYEAVILGKPVMDRIVTVTGQG---------IKNPQNFDVLSGTDMAELIEAAGGL 317

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
                DN+  VI GG  +           I              T++  +     D+  A
Sbjct: 318 T----DNVSKVISGGPMMGFAMYDTHVPCIK-------------TSSACLCLEKDDVADA 360

Query: 333 IWRLSVFYKHESCGQCT 349
                      +CG+C 
Sbjct: 361 -----EQTACINCGRCV 372


>gi|282857805|ref|ZP_06267013.1| FAD dependent oxidoreductase [Pyramidobacter piscolens W5455]
 gi|282584366|gb|EFB89726.1| FAD dependent oxidoreductase [Pyramidobacter piscolens W5455]
          Length = 610

 Score = 90.8 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +         +            +SCG+C PCR G   +  ++  ++ G A    ID + 
Sbjct: 27  IQASPPELCPVDLAVSFLHICHSQSCGKCVPCRVGLSRLEELLNSVLDGRADMGTIDTIE 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
             ++++   + CA+G  AA  +   ++ FR    E I Q+ RC
Sbjct: 87  RTAESVYLTSDCAIGQEAARMVLKGVRGFRDDFVEHI-QHGRC 128


>gi|170759772|ref|YP_001787779.1| putative electron transport protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406761|gb|ACA55172.1| putative electron transport protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 372

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 73/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNIKVIEETPELIINGVRYAMKATNST 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +      SL+ A+                   D+ V   A  Y  GEE A++
Sbjct: 152 KGYIAIKAKHPEAIASLEKALKGAT---------------DVEVKPLADLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPI--------AAKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|282882919|ref|ZP_06291524.1| electron transport complex protein RnfC [Peptoniphilus lacrimalis
           315-B]
 gi|281297330|gb|EFA89821.1| electron transport complex protein RnfC [Peptoniphilus lacrimalis
           315-B]
          Length = 446

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 115/359 (32%), Gaps = 71/359 (19%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  VK  G+ G GGAGF    K         +     ++N  E EP    D  IM  
Sbjct: 125 DDLIPFVKDMGIVGMGGAGFPLHAKLKGENPPLDEC----IINGAECEPFLTCDHRIMLE 180

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               ++EG  I SF      +++ +          ++  +            SK      
Sbjct: 181 RTEEILEGLDIFSFFYNQKASYMAIEENKPDAIAKMEEVI------------SKHPNWSH 228

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + V      Y  G+   L E++ G +  P+       +VGL+     + NV +       
Sbjct: 229 LKVVGCQTKYPQGDSKRLSEAVIG-RIVPQNGV--TNDVGLF-----LTNVGTTLAFSEA 280

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + +G   Y      +  G         +  P  +   +     E++   CGG+   +   
Sbjct: 281 MVKGKPTYERVITVSGSG---------IKEPKNILVKIGTPVGEIL-DFCGGVVEDY--- 327

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL--GTAAVIVMDRSTDIIKAIWRLSV 338
             +I GG                    +  + S +   T+ ++V                
Sbjct: 328 KEIICGGPMTG--------------KSVFNLNSPITKTTSGILVFTDKE---------EN 364

Query: 339 FYKHESCGQCTPCREGTGWMMRVME---RLVKGIAQKREIDLLYEV-SKNIEGRTICAL 393
             +   C +C+ C +     +   +    +++G      +D+  E+ +       IC+ 
Sbjct: 365 SIEESPCIRCSRCVDHCPANINPTDINAAILRGR-----LDICEELHADQCMECGICSF 418


>gi|170754859|ref|YP_001782009.1| putative electron transport protein [Clostridium botulinum B1 str.
           Okra]
 gi|169120071|gb|ACA43907.1| putative electron transport protein [Clostridium botulinum B1 str.
           Okra]
          Length = 372

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 73/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNIKVIEETPELIINGVRYAMKATNST 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +      SL+ A+                   D+ V   A  Y  GEE A++
Sbjct: 152 KGYIAIKAKHPEAIASLEKALKGAT---------------DVEVKPLADLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPI--------EAKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|148380423|ref|YP_001254964.1| electron transferring subunit of proline reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|148289907|emb|CAL84016.1| putative electron transferring subunit of proline reductase
           [Clostridium botulinum A str. ATCC 3502]
 gi|295319788|gb|ADG00166.1| putative electron transport protein [Clostridium botulinum F str.
           230613]
          Length = 372

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 73/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNIKVIEETPELIINGVRYAMKATNST 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +      SL+ A+                   D+ V   A  Y  GEE A++
Sbjct: 152 KGYIAIKAKHPEAIASLEKALKGAT---------------DVEVKPLADLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPI--------EAKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|269119596|ref|YP_003307773.1| electron transport complex, RnfABCDGE type, C subunit [Sebaldella
           termitidis ATCC 33386]
 gi|268613474|gb|ACZ07842.1| electron transport complex, RnfABCDGE type, C subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 438

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 110/321 (34%), Gaps = 63/321 (19%)

Query: 42  WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
            ++  ++ +G+ G GGA F   +K      V   R   L++N  E EP    D  +M+  
Sbjct: 124 ELLEIIENAGITGEGGAQFPAHIK----YDVKDKRIKNLILNGAECEPYLTCDYTLMKEY 179

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
              L +G  I    +                 E++  A+DE Y++  L S  +     ++
Sbjct: 180 TRELFDGIKIICEILK---------------PENIILAIDEKYSA--LESEFQKYNTDNV 222

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            +   +  Y  G E  L+ S+  K+     K   PA  G+      V+NV ++  V    
Sbjct: 223 KILTVSDIYPQGSEQLLINSILNKEI---PKSKLPAEEGI-----IVSNVGTVKAVYEAF 274

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
             G          +   +  +               +      +I+K   G++   +N+ 
Sbjct: 275 SYGRPLVERIVTISGEKSGEY---------GDYIIKIGTPLSHIIKK--SGLKDQPENVR 323

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
             I GG  +             +     E G   GT+ V+ + +  D I+          
Sbjct: 324 M-IFGGPMMG------------NEISDLETGIMKGTSGVLFLSKEIDRIE---------- 360

Query: 342 HESCGQCTPCREGTGWMMRVM 362
            ++C  C  C E     +  M
Sbjct: 361 RKNCILCGYCSEVCPVYLMPM 381


>gi|330860028|emb|CBX70355.1| hypothetical protein YEW_LE47540 [Yersinia enterocolitica W22703]
          Length = 418

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 91/280 (32%), Gaps = 54/280 (19%)

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           +VNA E EP    D+ ++  +   L+ G +    A GA    I ++ ++     +L   +
Sbjct: 11  LVNAAECEPMLKVDQQLIPRQAARLVRGVLYGMKATGACEGIIALKAKYEEAIAALTPLL 70

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                               I +H     Y  G+E   +    G++  P      P ++G
Sbjct: 71  -----------------PPQIRLHILPDVYPAGDEVITIWLATGRRVPP---AALPISIG 110

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           +      VNNV+++  V   + +   W            +  +++G V  P T+   +  
Sbjct: 111 V-----VVNNVQTLLNVARAVEQ--QWPVTR--------RTLTVNGAVARPLTLTVPLGT 155

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
           +  E++    G          A I GG  +    A       +             T  +
Sbjct: 156 SLREVLALAGGATINNP----AYINGGPMMGH--ALHDLDQPVTKT----------TGGL 199

Query: 321 IVMDRSTDIIKAIWRL---SVFYKHESCGQCTPCREGTGW 357
           +V+     +I    R     +      C QC  C E    
Sbjct: 200 LVLPADHLLITRRARSDKDVLAIARTVCEQCRMCTELCPR 239


>gi|153810814|ref|ZP_01963482.1| hypothetical protein RUMOBE_01198 [Ruminococcus obeum ATCC 29174]
 gi|149833210|gb|EDM88292.1| hypothetical protein RUMOBE_01198 [Ruminococcus obeum ATCC 29174]
          Length = 440

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 118/339 (34%), Gaps = 57/339 (16%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
            ++ +  ++ I+N +K  G+ G GGAGF T +K    PK  S +  Y++VN  E EP   
Sbjct: 113 ARLEDLTKEEILNRIKEGGVVGMGGAGFPTHVK--LAPKDPS-KIEYILVNGAECEPYIT 169

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D   M  EP  +++G  +      +   +I +          ++  V +          
Sbjct: 170 SDYRRMIEEPEKVVKGLQVILTLFDSAKGYICIEDNKPDCIAKMKELVKDID-------- 221

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                   I V      Y  G E  L+ +  G++    +    PA+VG       V+NVE
Sbjct: 222 -------RIEVKEMMTKYPQGGERTLIYAATGREINSSM---LPADVG-----CVVDNVE 266

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCG 271
           ++  V   +  G              +++ +++G  +  P  +         EL++   G
Sbjct: 267 TVISVYKAVILG----------RPVNSRVVTVTGDGIKEPKNLLVLAGTDMSELVDAAGG 316

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                   +   I GG  +    A                     T+A + ++   D + 
Sbjct: 317 LKG----KIAKAISGGPMMGF--ALYDLHVPCTKT----------TSAFLFLE--HDAVS 358

Query: 332 AIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIA 370
               +       +CG+C     G     R+ +   +G  
Sbjct: 359 EAQEIQ--TACINCGRCVSVCPGHVLPARLAKLAERGDM 395


>gi|300814130|ref|ZP_07094413.1| electron transport complex, RnfABCDGE type, C subunit
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511787|gb|EFK39004.1| electron transport complex, RnfABCDGE type, C subunit
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 446

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 115/359 (32%), Gaps = 71/359 (19%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D +I  VK  G+ G GGAGF    K         +     ++N  E EP    D  IM  
Sbjct: 125 DDLIPFVKDMGIVGMGGAGFPLHAKLKGENPPLDEC----IINGAECEPFLTCDHRIMLE 180

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               ++EG  I SF      +++ +          ++  +            SK      
Sbjct: 181 RTEEILEGLDIFSFFYNQKVSYMAIEENKPDAIAKMEEVI------------SKHPNWSH 228

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + V      Y  G+   L E++ G +  P+       +VGL+     + NV +       
Sbjct: 229 LKVVGCQTKYPQGDSKRLSEAVIG-RIVPQNGV--TNDVGLF-----LTNVGTTLAFSEA 280

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
           + +G   Y      +  G         +  P  +   +     E++   CGG+   +   
Sbjct: 281 MVKGKPTYERVITVSGSG---------IKEPKNILVKIGTPVGEIL-DFCGGVVEDY--- 327

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL--GTAAVIVMDRSTDIIKAIWRLSV 338
             +I GG                    +  + S +   T+ ++V                
Sbjct: 328 KEIICGGPMTG--------------KSVFNLNSPITKTTSGILVFTDKE---------EN 364

Query: 339 FYKHESCGQCTPCREGTGWMMRVME---RLVKGIAQKREIDLLYEV-SKNIEGRTICAL 393
             +   C +C+ C +     +   +    +++G      +D+  E+ +       IC+ 
Sbjct: 365 SIEESPCIRCSRCVDHCPANINPTDINAAILRGR-----LDICEELHADQCMECGICSF 418


>gi|294636370|ref|ZP_06714759.1| electron transport complex protein RnfC [Edwardsiella tarda ATCC
           23685]
 gi|291090358|gb|EFE22919.1| electron transport complex protein RnfC [Edwardsiella tarda ATCC
           23685]
          Length = 576

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 118/361 (32%), Gaps = 69/361 (19%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
             +  ++  +   +  +          +I  +  +G+ G GGAGF T  K     +  +D
Sbjct: 114 HQERWAERKALPDYQAL------SPQALIEHIHQAGIAGLGGAGFPTAAKL----RGGAD 163

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
             + L++NA E EP    D  +MR     ++ GC I    +      I +     +   +
Sbjct: 164 CVNTLIINAAECEPYITADDRLMREHADEIVAGCAILQHILAPERILIGIEDNKPQAIAA 223

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L+ A+                    I +      Y  G    L++ L G +         
Sbjct: 224 LRQALQC---------------HSQIHLRVIPTKYPSGGAKQLIKILTGMEV---PYGHH 265

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTV 254
            +++G+      + NV ++  +   +  G               ++ +++G  ++ P  V
Sbjct: 266 SSSIGV-----LMQNVATVYAIKRAVIDGEPLI----------ERIVTLTGEQMHRPGNV 310

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
              +      L++ H G I         VI GG  +                 L  +G  
Sbjct: 311 WAPLGTPVKHLLQ-HGGFIAQDKHP--MVIMGGPLMGF--------------TLSRLGVP 353

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQK 372
           +      ++  S D        S   + + C +C+ C +      + + +    +G    
Sbjct: 354 VVKITNCILAPSRD------EFSAPQEEQPCIRCSSCADVCPVRLLPQQLYWYSRGQEHD 407

Query: 373 R 373
           +
Sbjct: 408 K 408


>gi|153937072|ref|YP_001388159.1| putative electron transport protein [Clostridium botulinum A str.
           Hall]
 gi|152932986|gb|ABS38485.1| putative electron transport protein [Clostridium botulinum A str.
           Hall]
          Length = 372

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 74/237 (31%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNIKVIEETPELIINGVRYAMKATNST 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +      SL+ A+                   D+ V   A  Y  GEE A++
Sbjct: 152 KGYIAIKAKHPEAIASLEKALKGAT---------------DVEVKPLADLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P            + V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPI--------EAKSIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|310767587|gb|ADP12537.1| Electron transport complex protein rnfC [Erwinia sp. Ejp617]
          Length = 785

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 124/395 (31%), Gaps = 87/395 (22%)

Query: 33  DKILEKGRDWIINEVKASGLRGR---------GGAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           D+  EK        V  + L  R         GGAGF T  K     +  +     L++N
Sbjct: 116 DRWCEKQPFDDYLRVDRAELVARIHQAGVAGLGGAGFPTATKLKGGLRGVN----TLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           A E EP    D  +M+     ++EG  I ++ + A    I +     +   +L+ A+   
Sbjct: 172 AAECEPYITADDRLMQDCAAEVLEGSRILAWILQADRVLIGIEDNKPQAITALRKALGNA 231

Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
                           D+ +      Y  G    L + L GK+           ++G+  
Sbjct: 232 T---------------DLQIRVIPTKYPSGGAKQLTKILTGKEV---PHGGRSTDIGV-- 271

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITF 262
               + NV +   V   +  G               ++ +++G  V  P  V   +    
Sbjct: 272 ---LMQNVGTAFAVKRAIIDGEPLT----------ERVVTLTGESVTQPGNVWARLGTPI 318

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVI 321
             L++               V+ GG  +   LP   +    +    L    S +G  A  
Sbjct: 319 SHLLQHAG----FTPGAEQMVVMGGPLMGFTLPTLDVPVVKITNCILAPAASEMGQNA-- 372

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLY 379
                                ++C +C+ C +      + + +    +G   ++     +
Sbjct: 373 -------------------AEQNCIRCSACADACPAALLPQQLYWFSRGGDHEK--ARAH 411

Query: 380 EVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
            ++  IE    C    A A+       L++ +R  
Sbjct: 412 NIADCIE----CG---ACAYVCPSNIPLVQYYRQE 439


>gi|304440541|ref|ZP_07400428.1| Fe(III) reductase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371019|gb|EFM24638.1| Fe(III) reductase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 610

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 1/97 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G   + ++++ ++ G A    +D++ + +     
Sbjct: 35  CPVDMARVFVELCHAQTCGKCVPCRVGLAQLAKLIKDVLDGNATLETLDVIEQTALTAME 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            + CA+G  AA  +   +  FR   EE I  + RCNF
Sbjct: 95  SSDCAIGYEAANMVYKGLIGFRDDYEEHIL-HGRCNF 130


>gi|320526975|ref|ZP_08028164.1| electron transport complex, RnfABCDGE type, C subunit
           [Solobacterium moorei F0204]
 gi|320132560|gb|EFW25101.1| electron transport complex, RnfABCDGE type, C subunit
           [Solobacterium moorei F0204]
          Length = 442

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 99/349 (28%), Gaps = 72/349 (20%)

Query: 48  KASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIE 107
           K SG+ G GGAGF      S++     +     +VNA E EP    D   +      L  
Sbjct: 135 KDSGMLGLGGAGFP-----SYVKYNKPENVDLFIVNAVECEPFLTSDYKNIEENMDLLKI 189

Query: 108 GCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGA 167
           G +       A    + ++ +   +   LQ                       I V    
Sbjct: 190 GTLAFFKMSNAKAGCVAIKEDKKEQIAQLQETFKGT----------------PIEVRIVP 233

Query: 168 GAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASW 227
             Y  G E  L+  L  K+         P   G       VNN  +       +  G   
Sbjct: 234 NVYPMGWERTLVYQLTKKRYD-----RLPIEAG-----CIVNNASTAIAFGNAIVNGMPV 283

Query: 228 YSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
                       K  ++SG  V  P  V   +     E+I    GG + G ++++ +  G
Sbjct: 284 TH----------KYLTVSGDAVKNPQNVYVPVGTKVHEII-DAVGGYKDGVNDVVLLAGG 332

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
                 +P  Q                       I      D +             +C 
Sbjct: 333 PMMGRAVPNDQFVV------------MAQNNGLTIQKYEKPDTV-------------ACL 367

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           +C  C E     ++ +    +  +   +  +  +V   IE    C L  
Sbjct: 368 RCGRCTETCPSGLQPVRIASEHKSVDYDTLMRLDVMNCIE----CGLCT 412


>gi|310657574|ref|YP_003935295.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Clostridium sticklandii DSM 519]
 gi|308824352|emb|CBH20390.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Clostridium sticklandii]
          Length = 445

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 102/303 (33%), Gaps = 54/303 (17%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K +       ++  Y+++NA E EP    D+ +M   P  +I G   A   +GA 
Sbjct: 20  FPTHAKLT-------EKAEYILLNAAECEPLLRVDQQLMEIYPKEIILGFEAAGKQVGAS 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++ +  +  + L  A++    +              + V      Y  G+E  L+
Sbjct: 73  QAIIGIKNKHKKVIKILNEAIEALNLTEY------------VKVTPLEDVYPAGDEHVLV 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
                KK  P  +   P  VG       V N E+   +          Y+   +     T
Sbjct: 121 YEFT-KKIVP--ELGIPLRVG-----CVVINSETALNI----------YNAINQLPVTDT 162

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
            L +I+G +  P T++  +      L EK          +  AVI GG  +   P  +  
Sbjct: 163 YL-TIAGDIENPVTLKVPVGTPIRALFEKAG----IKDIDSYAVIDGGPMMG--PVMENI 215

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              ++                I++ +   +IK            S   C  CR  T    
Sbjct: 216 DGFVNKKS----------KGYILLKKDHFLIKRKTVSLERASVVSRTACEQCRMCTDLCP 265

Query: 360 RVM 362
           R +
Sbjct: 266 RYL 268


>gi|322806733|emb|CBZ04302.1| electron transferring subunit of proline reductase [Clostridium
           botulinum H04402 065]
          Length = 372

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 73/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNIKVIEETPELIINGVRYAMKATNST 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +      SL+ A+                   D+ V   A  Y  GEE A++
Sbjct: 152 KGYIAIKAKHPEAIASLEKALKGAT---------------DVEVKPLADLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPI--------EAKCIVMNAETLANITRAVEEGKPVVDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|268589519|ref|ZP_06123740.1| electron transport complex protein RnfC [Providencia rettgeri DSM
           1131]
 gi|291315188|gb|EFE55641.1| electron transport complex protein RnfC [Providencia rettgeri DSM
           1131]
          Length = 781

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 110/359 (30%), Gaps = 77/359 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K         D    L++NA E EP    D  +M+     +IEGC +    +   
Sbjct: 152 FPTASKL----AGGQDAIKTLIINAAECEPYITADDRLMQEHAQEVIEGCRVLQHLLTPD 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        ++L+ AV                 D  I +      Y  G    L 
Sbjct: 208 QVLIGIEDNKPEAIQALKDAV--------------TSQDKQIFIRVIPTKYPSGGAKQLT 253

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          + +G+      + NV ++  +   +  G               
Sbjct: 254 KILTGKEV---PSGARSSQIGV-----LMQNVGTVVAIKRAVVDGQPLI----------E 295

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  ++ P      +      L+++         +    VI GG  +   LP   
Sbjct: 296 RVVTVTGEAISKPGNFWARLGTPVKHLLQQSG----FHPEPEQMVIMGGPLMGFTLPDLN 351

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG- 356
           +    +    L      +G  A+                      E+C +C  C +    
Sbjct: 352 VPVVKICNCLLVPTMEEMGPKAL---------------------EEACIRCGLCVDACPA 390

Query: 357 -WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             + + +    KG   ++     + +   IE    C    A A+       L++ +R  
Sbjct: 391 GLLPQQLYWFSKGDEHEK--AQKHNLFDCIE----CG---ACAYVCPSNIPLVQYYRQE 440


>gi|304408661|ref|ZP_07390282.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS183]
 gi|307305490|ref|ZP_07585238.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica BA175]
 gi|304352482|gb|EFM16879.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS183]
 gi|306911793|gb|EFN42218.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica BA175]
          Length = 882

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 101/317 (31%), Gaps = 58/317 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K + + +        +++N  E EP    D  +MR     ++ G  I    +   
Sbjct: 151 FPTHIKLNPVSE-----IDLVIINGVECEPYISADDRLMREYSQDILAGIGIIHRLLTPK 205

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        +++QAAV +C      G  +       I V      Y  G E  L+
Sbjct: 206 RIVIAIEDNKPEAAKAMQAAVSQC------GLPAGS-----IRVTVIPTKYPSGGEKQLI 254

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + + G++         PA +G+      V+NV +   +   + +G               
Sbjct: 255 QIITGREV---PSGAIPAKLGI-----VVHNVGTAFAIHQAVTQG----------KPLIE 296

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G +V+ P      +    D ++           +    VI GG  +    A   
Sbjct: 297 RVVTVTGKNVSKPGNYWLPIGTPVDHVLT----ATEFTPEPDQKVIIGGPMMGHALANIQ 352

Query: 299 RGAIMDYDGL-----KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES--------- 344
              +   + +     +E+GS     A I          A+      + H           
Sbjct: 353 VPILKGTNCILVPSSQEIGSSPEEKACIRCGECATACPALLLPQQLFWHAKAEEYDKAAS 412

Query: 345 -----CGQCTPCREGTG 356
                C +C  C     
Sbjct: 413 YNLKDCIECGCCSYVCP 429


>gi|229829143|ref|ZP_04455212.1| hypothetical protein GCWU000342_01228 [Shuttleworthia satelles DSM
           14600]
 gi|229792306|gb|EEP28420.1| hypothetical protein GCWU000342_01228 [Shuttleworthia satelles DSM
           14600]
          Length = 454

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 107/320 (33%), Gaps = 62/320 (19%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             ++ II++++ +G+ G GGAGF T +K   M     D    ++ N  E EP    D   
Sbjct: 124 LSKEEIIDKIRTAGVVGMGGAGFPTAVK---MSPKNPDEIDTIIANCAECEPFLTSDYRQ 180

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M   P  L+EG  I     G    F  V          L+  V +               
Sbjct: 181 MMDHPEELVEGMRIILQIFGKARGFFGVENNKPDCIAKLEELVKD--------------- 225

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           +  + V      Y  G E  ++ +  G+    ++    PA+ G       V+NV +I  +
Sbjct: 226 EPRMSVIPLKTKYPQGGERQIIYACTGRAINSKM---LPADAG-----CIVDNVATICAI 277

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +R G               ++F++SG  V  P      +    DE++    G     
Sbjct: 278 YKAVRFGIPVID----------RIFTVSGDAVAEPQNFHIHIGTYMDEILAAAGG----T 323

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              +   I GG  +                    + S   T+A++ M   T +       
Sbjct: 324 NQEVAKYISGGPMMGFAMYDTH------------VASTKTTSALLAMTAETCVS------ 365

Query: 337 SVFYKHESCGQCTPCREGTG 356
              Y+  +C  C  C E   
Sbjct: 366 ---YEASACINCGRCVEACP 382


>gi|209695337|ref|YP_002263266.1| electron transport complex protein RnfC [Aliivibrio salmonicida
           LFI1238]
 gi|208009289|emb|CAQ79555.1| electron transport complex protein RnfC [Aliivibrio salmonicida
           LFI1238]
          Length = 716

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 106/322 (32%), Gaps = 63/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
            +    +I  ++ SG+ G GGAGF T  K     +    +   L++NA E EP    D  
Sbjct: 131 TRDPIKLIERIRQSGISGMGGAGFPTSRKL----QSGIGKADMLIINAAECEPYITADDR 186

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     +I G  I    +    A I +        ++L A V E              
Sbjct: 187 LMQDYAAEVIVGIKILQHILTPKIAIIGIEDNKPEAIKALNAIVTE-------------- 232

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I++      Y  G    L++ L GK+           ++G+      V NV +I  
Sbjct: 233 -HDNILIRVIPTKYPSGGSRQLVKILTGKEVPASG---RSTDIGV-----IVQNVGTIFA 283

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +                  ++ +++G+ ++ P      +  + D L      G + 
Sbjct: 284 VKRAICDAEPLI----------ERVVTLTGNSLDIPGNFWVRLGTSVDYL--MTLTGYKA 331

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
              +   ++ G      LP  Q+    +                         II    +
Sbjct: 332 DKKHPRIIMGGSLMGFTLPHQQIPITKIT----------------------NCIITPDRK 369

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
               Y HE +C +C+ C +   
Sbjct: 370 ELPLYNHEMACIRCSSCADACP 391


>gi|95928557|ref|ZP_01311304.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135347|gb|EAT16999.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 651

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH-ESCGQCTPCREGTGWMMRVMERLVKG 368
           ++G+ +G   V+++D  TD++          +    CG+CTP ++GT  M   + R+++G
Sbjct: 39  KVGAFMGWDGVVLLDGETDVVAMAAEYMKRVQEKHCCGKCTPGKKGTRVMQDTLARILQG 98

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
             ++R+++++  +   +EG   C L   +A P+   +K FR      I    +
Sbjct: 99  HGEERDLEIIENLKSLLEG-CKCTLCMTSAIPVLDTVKYFRDDYMAYIGGGKK 150


>gi|313114797|ref|ZP_07800297.1| electron transport complex, RnfABCDGE type, C subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622852|gb|EFQ06307.1| electron transport complex, RnfABCDGE type, C subunit
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 444

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 108/363 (29%), Gaps = 71/363 (19%)

Query: 24  MSRGHWDNVDKILE----KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           +       VD  ++      +   +  V+  GL G GGAGF T +K          +   
Sbjct: 106 IKTDGKQTVDPAVKAPEVTDKASFLKAVRECGLVGLGGAGFPTDVKL-----QPKQQVDT 160

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L++NA E E     D   M +    +I G        G     I +        + L   
Sbjct: 161 LLINASECEVWLTSDTQEMLNCSDDIIRGIKAVLQYTGIPKCVIGIENNKPECIDLLCK- 219

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                         K   D  I V      Y  G E  L+E   G++         PA+ 
Sbjct: 220 --------------KTNGDSTIEVKPLPSVYGTGAELILIEKCLGREV---PHGGLPADA 262

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESM 258
           G       V NV S++ +   L  G               +  ++ G     P  +   +
Sbjct: 263 G-----AIVMNVTSVSTLGKYLATGMPVV----------ERTITVDGDACAKPQNIVVPV 307

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
              + ++I+                   G     +  G M G  ++        +   T+
Sbjct: 308 GTAYQDIIDFAG--------------VKGELGKVVAGGAMMGPAVENLSYP---TTKTTS 350

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            +I + ++          +       C +C  C E     +  +E  V      R++  L
Sbjct: 351 GLIFLSKAA---------AEPAPVNPCIRCGRCVEYCPMGLEPVE--VNQAYAARDVQEL 399

Query: 379 YEV 381
            ++
Sbjct: 400 GKL 402


>gi|183599241|ref|ZP_02960734.1| hypothetical protein PROSTU_02700 [Providencia stuartii ATCC 25827]
 gi|188021471|gb|EDU59511.1| hypothetical protein PROSTU_02700 [Providencia stuartii ATCC 25827]
          Length = 969

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 113/368 (30%), Gaps = 76/368 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K         D    L+VNA E EP    D  +M+     +IEGC +    +   
Sbjct: 152 FPTASKL----AGGKDAIKTLIVNAAECEPYITADDRLMQEHADEVIEGCRVLQHLLNPD 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+                +D  I V      Y  G    L 
Sbjct: 208 QILIGIEDNKPEAIAALKKAI--------------TAHDKQIFVRVIPTKYPSGGAKQLT 253

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          + +G+      + NV ++  +   +  G               
Sbjct: 254 KILTGKEV---PSGARSSQIGV-----LMQNVGTVVAIKRAVIDGQPLI----------E 295

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  +  P      +      L+++          +   VI GG  +        
Sbjct: 296 RVVTVTGESITSPGNFWTRLGTPVHHLLQQTG----FTPASEQMVIMGGPLMGF------ 345

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-- 356
                         +       +V   +  ++ ++  +      E+C +C  C E     
Sbjct: 346 --------------TLPDLKVPVVKICNCLLVPSVEEVGQKPIEEACIRCGLCVEACPAA 391

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPLIE 413
            + + +    KG   ++     + +   IE    C    A A+       L++ +R   +
Sbjct: 392 LLPQQLYWFSKGKEHEK--AQKHNLFDCIE----CG---ACAYVCPSNIPLVQYYRQE-K 441

Query: 414 ERIDQYHR 421
             I +  +
Sbjct: 442 AEIREIKQ 449


>gi|114777066|ref|ZP_01452086.1| electron transport complex protein RnfC [Mariprofundus ferrooxydans
           PV-1]
 gi|114552587|gb|EAU55047.1| electron transport complex protein RnfC [Mariprofundus ferrooxydans
           PV-1]
          Length = 521

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 98/330 (29%), Gaps = 63/330 (19%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            W N D  L + R  +       GL G GGA F T +K     +        +V+N  E 
Sbjct: 130 DWRNTDPALLRERARMC------GLAGLGGAVFPTFIKLV---QDSRFPIETVVLNGIEC 180

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +M      ++ G  I    +    A I +        E+++ A+       
Sbjct: 181 EPWLTTDHRLMLEYADEILTGLAIIMHMVNTDSAIIAIEDNKSDAAEAIEQAL--ALRDD 238

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           L G+           V      Y  G E  L+ SL G++      P              
Sbjct: 239 LEGA----------RVVLLPTRYPQGSEKQLIYSLTGREVPAGKLPMH------------ 276

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN-YPCTVEESMSITFDELI 266
                 I ++   +    + Y    R      +L ++SG     P  +   +      + 
Sbjct: 277 ------IGMLCQNVATARALYRAVVRAEPLTERLVTVSGDAMPRPANLHVRIGTPMRYVF 330

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +                        L  G M G ++ +  +  + S  G  A++     
Sbjct: 331 AQQGLTDFEDVR-------------ILHGGPMMGELLRHPDVPVVKSTNGMLAML----- 372

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                    +    + ++C +C  C E   
Sbjct: 373 -----EASFMGGHTQEQACIRCGHCSEACP 397


>gi|148265660|ref|YP_001232366.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter uraniireducens Rf4]
 gi|146399160|gb|ABQ27793.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Geobacter uraniireducens Rf4]
          Length = 672

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 2/127 (1%)

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH-ESCGQCTPCREG 354
                  + YDG + M + +G   +IV ++  D+           +    CG+CTP ++G
Sbjct: 24  EAQFRLPVTYDGERPMAAFMGWDGIIVFNKDVDVPVMAAEYMRRVQTLYCCGKCTPGKKG 83

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           T  +M  +  ++ G A + ++  + +++  ++    C L  ++  P+   +K FR     
Sbjct: 84  TRVLMDALAAIIAGKASEADLATIEDLADLLK-NCKCTLCQSSTVPVLDAVKYFRNDFLA 142

Query: 415 RIDQYHR 421
            I+   +
Sbjct: 143 YINSAKK 149


>gi|71906800|ref|YP_284387.1| electron transport complex protein RnfC [Dechloromonas aromatica
           RCB]
 gi|71846421|gb|AAZ45917.1| Electron transport complex, RnfABCDGE type, C subunit
           [Dechloromonas aromatica RCB]
          Length = 570

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 89/284 (31%), Gaps = 43/284 (15%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            + +++       + +   ++ +G+ G GGA F T  K +    V  +    +V+N  E 
Sbjct: 117 DYASLE------PEAVRELLREAGIVGLGGAVFPTHGKLTASKTVPMEE---MVINGAEC 167

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR     ++ G  +    +      I +                   A  
Sbjct: 168 EPYITCDDLLMRERAEEVVRGAGVFRDLLRPKKVLIGIEDNKPEAAA------AMTAAIK 221

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
            LG   K     +  V      Y  G    L+  L GK+           ++G+      
Sbjct: 222 ALGEAFK-----EFEVVVVPTRYPAGGAKQLIRVLTGKEV---PASKRSTDLGV-----Q 268

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIE 267
             NV +       L  G    S          +L +I+G+V  P   E  +    DEL+ 
Sbjct: 269 CFNVATAYTAWRALAHGEPVIS----------RLVTITGNVGEPRNWEVLIGTPMDELL- 317

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEM 311
                I     +   +I GG  +  L        +   + L   
Sbjct: 318 ----RIGQPKPDTDGIIMGGPMMGFLVPDTKAPVVKATNCLIAH 357


>gi|187778939|ref|ZP_02995412.1| hypothetical protein CLOSPO_02534 [Clostridium sporogenes ATCC
           15579]
 gi|187772564|gb|EDU36366.1| hypothetical protein CLOSPO_02534 [Clostridium sporogenes ATCC
           15579]
          Length = 372

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 73/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKSDNKD-----GYIIANCVECEPALHHNIKVIEETPELIINGVRYAMKATNSA 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +      SL+ A+                   D+ V   A  Y  GEE A++
Sbjct: 152 KGYIAIKAKHPEAIASLEKALKGAT---------------DVEVKPLADLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTQLPI--------EAKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|308275216|emb|CBX31813.1| hypothetical protein N47_N26380 [uncultured Desulfobacterium sp.]
          Length = 228

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++ M+ +  +++    L  F+ +ESCG+C PCR G   ++ ++  +V G +    ++
Sbjct: 115 SGCIMTMESNVCMVQLADYLIKFHANESCGKCVPCRLGIQRLIELISGVVSGNSPANAVE 174

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH----RCNFQ 425
            +  + +  +    CA     +  I  +I NFR   E  I + +     C F+
Sbjct: 175 QMQTMIRLTDQAAYCAFAGKVSKIILAIISNFREEFETHIKEKNCALGVCKFK 227


>gi|74318035|ref|YP_315775.1| electron transport complex protein RnfC [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057530|gb|AAZ97970.1| Electron transport complex, RnfABCDGE type, C subunit [Thiobacillus
           denitrificans ATCC 25259]
          Length = 558

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 85/257 (33%), Gaps = 40/257 (15%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L      +   ++  G+ G GGA F + +K              L++N  E EP    D 
Sbjct: 119 LGAPPAELRMRLRDLGIVGLGGAVFPSAVKLDPGAAQVC---PTLIINGGECEPWITCDD 175

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MRH    +++G  +    +G+    I +         ++QAA  +             
Sbjct: 176 VLMRHFADEILQGVAVMRLLLGSSEILIGIEDNKPEAIAAMQAAAAKL------------ 223

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
             D  + +      Y  G    ++E+L GK+           ++G+      V NV +  
Sbjct: 224 --DFAVEIVAVPARYPAGGAKQMIETLTGKQV---PSGKLSTDIGI-----QVFNVGTAR 273

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            +      G    S          +L +++GHV  P   E  +      LI         
Sbjct: 274 ALARAACHGEPLIS----------RLVTVTGHVLRPQNFEVLIGTPMHTLITLAG----- 318

Query: 276 GWDNLLAVIPGGSSVPC 292
             D    V+ GG  +  
Sbjct: 319 ERDGNTGVLMGGPMMGV 335


>gi|210621817|ref|ZP_03292846.1| hypothetical protein CLOHIR_00791 [Clostridium hiranonis DSM 13275]
 gi|210154581|gb|EEA85587.1| hypothetical protein CLOHIR_00791 [Clostridium hiranonis DSM 13275]
          Length = 433

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 87/259 (33%), Gaps = 38/259 (14%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
           DK +E      I+ V+ +G+ G GGAGF T +K         ++   L++NA E EP   
Sbjct: 71  DKFVELTSTEPIDLVREAGIVGLGGAGFPTHVKLG----KPFEKGGVLLINAAECEPILD 126

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            +   +      +++        + A  A I ++     E   L+AA+D           
Sbjct: 127 HNMRYINENAEYVVKSVKTVMDMVNAEKAIIGIKSLHTEEIAKLEAAID----------- 175

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                  +I +H     Y  GEE AL+    G         P  A+         V N+E
Sbjct: 176 -----CDNITIHGLENMYPMGEERALIREALGTLLNV-TDLPLAADA-------IVINLE 222

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGG 272
           ++  +   +                   +  +    N        +  T  E+IE+  G 
Sbjct: 223 TLYRIQEAIEFKKPLIDKDMT-------VAGLINGENIKTFRNVPIGTTVGEMIERAGGL 275

Query: 273 IRGGWDNLLAVIPGGSSVP 291
               +     +I GG    
Sbjct: 276 ATEEYGE---IIMGGPFTG 291


>gi|319941097|ref|ZP_08015433.1| hypothetical protein HMPREF9464_00652 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805454|gb|EFW02256.1| hypothetical protein HMPREF9464_00652 [Sutterella wadsworthensis
           3_1_45B]
          Length = 684

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 60/121 (49%)

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           LP G        ++    + S +G    +V + +  +   ++      +  SCG+CTPCR
Sbjct: 26  LPVGFPLEEAAAFNRGNPLTSVIGPQGFLVFENAPHLTVILYAYYEDARSFSCGRCTPCR 85

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
            GT  +   ++  ++G     + D + E +++++  ++C +G  +A PI G I+NFR  +
Sbjct: 86  MGTVLIAEALKNALEGRGSTVDWDEIAETARHMKVSSLCGIGLQSAEPILGAIENFRTEL 145

Query: 413 E 413
           E
Sbjct: 146 E 146


>gi|218133996|ref|ZP_03462800.1| hypothetical protein BACPEC_01886 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991371|gb|EEC57377.1| hypothetical protein BACPEC_01886 [Bacteroides pectinophilus ATCC
           43243]
          Length = 611

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 40/101 (39%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           ++        +            ++CG+C PCR G G +   + ++++G A    +  + 
Sbjct: 27  IVASPPGICPVDLALNFLRLCHAQTCGKCVPCRVGLGQLADYLNQVLEGEATMETLGEIE 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
            ++K I     CA+G  AA  +   ++ FR      I    
Sbjct: 87  RLAKVISNSADCAIGYEAANMVLRGLEGFRDDYVAHIKNGK 127


>gi|226949834|ref|YP_002804925.1| putative electron transport protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844512|gb|ACO87178.1| putative electron transport protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 434

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 77/236 (32%), Gaps = 46/236 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             Y++ N  E EP    +   +  EP T+I+G   A  A  A 
Sbjct: 97  FPTHIKLK-----ADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAP 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++G+     + L+  +                   DI V      Y  GEE A++
Sbjct: 152 KGYIAIKGKHENAIKILKDHLKGAS---------------DIEVKELQDIYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ GK  +P   P              V N E++A +   +                  
Sbjct: 197 HAILGKWLEPTQLP--------LEAKCVVINGETLANITRAVEDRKPVID---------- 238

Query: 240 KLFSISGHVNYP----CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           K  +I G +         ++  +     +LIE+  G      +    V+ GG    
Sbjct: 239 KDITIIGKLKTGNKPNVLLDVPVGTPIHDLIEEFGGIDGEFGE----VVIGGPYTG 290


>gi|168180653|ref|ZP_02615317.1| putative electron transport protein [Clostridium botulinum NCTC
           2916]
 gi|226949820|ref|YP_002804911.1| putative electron transport protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668544|gb|EDT80523.1| putative electron transport protein [Clostridium botulinum NCTC
           2916]
 gi|226841617|gb|ACO84283.1| putative electron transport protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 372

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 72/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNIKVIEETPELIINGVRYAMKATNST 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +      SL+ A+                   D+ V   A  Y  GEE A++
Sbjct: 152 KGYIAIKAKHPEAIASLEKALKGAT---------------DVEVKPLADLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPI--------EAKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +      LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKALIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|116750125|ref|YP_846812.1| RnfABCDGE type electron transport complex subunit C
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699189|gb|ABK18377.1| electron transport complex, RnfABCDGE type, C subunit
           [Syntrophobacter fumaroxidans MPOB]
          Length = 440

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 108/320 (33%), Gaps = 58/320 (18%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             + ++ +++ +GL G GGAGF T +K S  P    D+   L++NA E EP    D   M
Sbjct: 122 SPEELLEKIRNAGLVGLGGAGFPTHLKLSPPPGTRLDK---LILNAAECEPYLNCDNRTM 178

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
              PH ++ G  I    +G     I +          L  A  E  A            D
Sbjct: 179 IEFPHEILTGARIILRILGIKECHIGIENNKQEAIWVLSRAAAESTA-----------PD 227

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I V+     Y  G E  L++++ G++      P  P +VG+      V NV +   + 
Sbjct: 228 CKISVNPLMVKYPQGSEKQLIQTITGRRV---PYPGLPFDVGV-----MVINVGTAKTIH 279

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +      Y           ++ +ISG  +  P  +   +     +++    G +    
Sbjct: 280 DAVVLEKPLY----------ERVVTISGRAIARPANLMVRIGTRLSDIVTFLGGTM---- 325

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
           DNL  ++ GG  +                          T+ V+ +              
Sbjct: 326 DNLARIVVGGPMMGFSIPTTDLPV------------MKTTSGVLFLSDDE---------I 364

Query: 338 VFYKHESCGQCTPCREGTGW 357
               H  C +C  C E    
Sbjct: 365 DSRPHGPCIRCGKCVEVCSM 384


>gi|170756441|ref|YP_001782026.1| putative electron transport protein [Clostridium botulinum B1 str.
           Okra]
 gi|169121653|gb|ACA45489.1| putative electron transport protein [Clostridium botulinum B1 str.
           Okra]
          Length = 434

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 76/236 (32%), Gaps = 46/236 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             Y++ N  E EP    +   +  EP T+I+G   A  A  A 
Sbjct: 97  FPTHIKLK-----ADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAP 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++G+     + L+  +                   DI V      Y  GEE A++
Sbjct: 152 KGYIAIKGKHENAIKILKDHLKGAS---------------DIEVKELQDIYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ GK  +P   P              V N E++A +   +                  
Sbjct: 197 HAILGKWLEPTQLP--------LEAKCVVINGETLANITRAVEDRKPVID---------- 238

Query: 240 KLFSISGHVNYP----CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           K  +I G +          +  +     +LIE+  G      +    V+ GG    
Sbjct: 239 KDITIIGKLKTGNKPNVLFDVPVGTPIHDLIEECGGIDGEFGE----VVIGGPYTG 290


>gi|222054704|ref|YP_002537066.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter sp. FRC-32]
 gi|221563993|gb|ACM19965.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter sp. FRC-32]
          Length = 672

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 2/128 (1%)

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH-ESCGQCTPCRE 353
                   + YDG + + + +G   +IV DRS D+           +    CG+CTP ++
Sbjct: 23  KDAQFRLPVTYDGERPLAAFMGWDGLIVFDRSVDVPAMAAEYMRRVQTLYCCGKCTPGKK 82

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           GT  +M  +  ++ G A + ++D + +++K +E    C L  ++  P+   +KNFR    
Sbjct: 83  GTKVLMDTLAAILGGNATEADLDTIEDLTKLLE-NCKCTLCQSSTVPVLDAVKNFRNDFL 141

Query: 414 ERIDQYHR 421
             I+   +
Sbjct: 142 AYINGGKK 149


>gi|153940301|ref|YP_001391778.1| putative electron transport protein [Clostridium botulinum F str.
           Langeland]
 gi|152936197|gb|ABS41695.1| putative electron transport protein [Clostridium botulinum F str.
           Langeland]
 gi|295319807|gb|ADG00185.1| putative electron transport protein [Clostridium botulinum F str.
           230613]
          Length = 434

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 76/236 (32%), Gaps = 46/236 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             Y++ N  E EP    +   +  EP T+I+G   A  A  A 
Sbjct: 97  FPTHIKLK-----ADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAP 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++G+     + L+  +                   DI V      Y  GEE A++
Sbjct: 152 KGYIAIKGKHENAIKILKDHLKGAS---------------DIEVKELQDIYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ GK  +P   P              V N E++A +   +                  
Sbjct: 197 HAILGKWLEPTQLP--------LEAKCVVINGETLANITRAVEDRKPVID---------- 238

Query: 240 KLFSISGHVNYP----CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           K  +I G +          +  +     +LIE+  G      +    V+ GG    
Sbjct: 239 KDITIIGKLKTGNKPNVLFDVPVGTPIHDLIEECGGIDGEFGE----VVIGGPYTG 290


>gi|266618983|ref|ZP_06111918.1| putative electron transport protein [Clostridium botulinum Bf]
 gi|263529084|gb|EEZ28453.1| putative electron transport protein [Clostridium botulinum Bf]
          Length = 372

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 73/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    + +++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNIEVIEETPELIINGVRYAMKATNST 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +      SL+ A+                   D+ V   A  Y  GEE A++
Sbjct: 152 KGYIAIKAKHPEAIASLEKALKGAT---------------DVEVKPLADLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++  +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPI--------EAKCIVMNAETLVNITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|302671387|ref|YP_003831347.1| electron transport complex RnfC [Butyrivibrio proteoclasticus B316]
 gi|302395860|gb|ADL34765.1| electron transport complex RnfC [Butyrivibrio proteoclasticus B316]
          Length = 438

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 102/294 (34%), Gaps = 45/294 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           E   +  I  V+ +G+ G GGAGF T +K  F PK   D+  Y++ N  E EP    D  
Sbjct: 118 EMTPEDKIAAVREAGVVGMGGAGFPTAVK--FAPKEP-DKIDYVIANCSECEPYLTSDYR 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M  EP  L+EG  IA          + +           +           L  N    
Sbjct: 175 RMIEEPELLLEGLKIAVSIFPNARGILAIEDNKPDCIAKFRE----------LTRNED-- 222

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I V      Y  G E  L+ +  G++    +    PA+ G       V+NV+++  
Sbjct: 223 ---KISVKAVKTKYPEGAERMLIYACTGREINSSM---LPADAG-----CIVDNVDTLCA 271

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   ++ G               ++ +I+G  +  P   +  +   + ELIE+  G    
Sbjct: 272 VCRAVKEG----------RPLMERIVTITGDCIADPRNYKVRIGTNYKELIEEAGG---- 317

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
                  VI GG  +       +    +         +     AV  M+ S  I
Sbjct: 318 FVTEPAKVISGGPMMGF----AIFDLDVPTTKTASAITAFSKDAVSEMEPSACI 367


>gi|114563345|ref|YP_750858.1| electron transport complex protein RnfC [Shewanella frigidimarina
           NCIMB 400]
 gi|114334638|gb|ABI72020.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 846

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 109/327 (33%), Gaps = 59/327 (18%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
           KI +  +  I+ ++K +G+ G GGA F + +K +      +     +++N  E EP    
Sbjct: 125 KIEQLSKGDILAKIKQAGIAGMGGAAFPSHVKLN-----PASEIDLVIINGVECEPYISA 179

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D  +MR     ++ G  I    +      I +        +++++A+             
Sbjct: 180 DDRLMREFSDEILTGISIIHHLLNPQRIIIAIEDNKPEAAQAMESAIRR----------- 228

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
               +  I V      Y  G E  L++ + GK+         PA +G+      V+NV +
Sbjct: 229 SSLPNDMIRVTVIPTKYPSGGEKQLIQIITGKEV---PSGAIPAQLGI-----VVHNVGT 280

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGG 272
              +   + +G               ++ +++G  +  P      +  T    +E     
Sbjct: 281 AYAIQEAVLQG----------KPLIERVVTLTGESIGKPGNYWLRIGTT----VEDALSQ 326

Query: 273 IRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
           +    ++   VI GG  +    A       +    LK     L  +   +          
Sbjct: 327 VSFQPESSQKVIVGGPMMGYALAD--LDVPI----LKGTNCLLTPSQAEIAPDPD----- 375

Query: 333 IWRLSVFYKHESCGQCTPCREGTGWMM 359
                     ++C +C  C      ++
Sbjct: 376 ---------EKACIRCGECAVACPALL 393


>gi|168180636|ref|ZP_02615300.1| putative electron transport protein [Clostridium botulinum NCTC
           2916]
 gi|182668637|gb|EDT80616.1| putative electron transport protein [Clostridium botulinum NCTC
           2916]
 gi|322806751|emb|CBZ04320.1| electron transferring subunit of proline reductase [Clostridium
           botulinum H04402 065]
          Length = 434

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 76/236 (32%), Gaps = 46/236 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             Y++ N  E EP    +   +  EP T+I+G   A  A  A 
Sbjct: 97  FPTHIKLK-----ADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAP 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++G+     + L+  +                   DI V      Y  GEE A++
Sbjct: 152 KGYIAIKGKHENAIKILKDHLKGAS---------------DIEVKELQDIYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ GK  +P   P              V N E++A +   +                  
Sbjct: 197 HAILGKWLEPTQLP--------LEAKCVVINGETLANITRAVEDRKPVID---------- 238

Query: 240 KLFSISGHVNYP----CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           K  +I G +          +  +     +LIE+  G      +    V+ GG    
Sbjct: 239 KDITIIGKLKTGNKPNVLFDVPVGTPIHDLIEECGGIDGEFGE----VVIGGPYTG 290


>gi|319938178|ref|ZP_08012576.1| hypothetical protein HMPREF9488_03412 [Coprobacillus sp. 29_1]
 gi|319806699|gb|EFW03348.1| hypothetical protein HMPREF9488_03412 [Coprobacillus sp. 29_1]
          Length = 434

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 118/351 (33%), Gaps = 65/351 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
              ++ + N +K  G+ G GG+GF T +K+S            +++N  E EP    D  
Sbjct: 117 SMSQEEVFNAIKELGIIGLGGSGFPTYIKYS-----HPQNIETILINGVECEPFLTSDHL 171

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
            M+ +   L +G      A GA  A I ++       + ++  V+E              
Sbjct: 172 AMKRDIKALFDGTQYLMKAAGAKNAIIAIKEHKP---DLMELLVEEAKNYS--------- 219

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              +I        Y  G E  L+E++  K+         PA +G+      VNN  +   
Sbjct: 220 ---NIEPREVPDRYPMGWERVLVETVFKKEFD-----KLPAEIGV-----IVNNSSTAIA 266

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHV-NYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +R G               ++ + SG+    P  VE ++    + ++EK  G I  
Sbjct: 267 LSKGIRNGEPITH----------RVVTFSGNGLKNPQNVEVAIGTPVNYIVEKLGGYIDD 316

Query: 276 GWDNLLAVIPGGSSVP--------CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
             D  L  + GG  +          + +      +M  + ++ +         +      
Sbjct: 317 DCDGFL--VGGGPMMGKSVMNDTFVIYSHNNAITVMKKENIQPLPCLKCGECTLHCPAHL 374

Query: 328 DIIKAIW-------RLSVFYKHESCGQCTPCR-------EGTGWMMRVMER 364
             ++ +         L      E C +C  C        E T  + +   R
Sbjct: 375 QPVRIMQGEKAGNVELIGKLDVERCVECGMCTYICPSKIEVTDMVAKAKRR 425


>gi|255522301|ref|ZP_05389538.1| hypothetical protein LmonocFSL_13977 [Listeria monocytogenes FSL
           J1-175]
          Length = 211

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 43/235 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K+S           YL++NA E EP    D  +MR+     I+   +    +GA 
Sbjct: 20  FPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I  +  +  E  +L++A+ E               D  + +H     Y  G+E  ++
Sbjct: 73  FAVIATKRYYTEEIAALRSAITEL--------------DASVTIHEMDNVYPTGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P      P  VG       V+NV ++  V   ++  A              
Sbjct: 119 FEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIQDDAPVVR---------- 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
           K  +++G V  P  ++  +   F+  +    G     +  L     GG  +  L 
Sbjct: 161 KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFL----DGGPMMGKLN 211


>gi|126090184|ref|YP_001041665.1| electron transport complex protein RnfC [Shewanella baltica OS155]
 gi|126174477|ref|YP_001050626.1| electron transport complex protein RnfC [Shewanella baltica OS155]
 gi|125997682|gb|ABN61757.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS155]
 gi|125999840|gb|ABN63910.1| hypothetical protein Sbal_4547 [Shewanella baltica OS155]
          Length = 884

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 96/256 (37%), Gaps = 39/256 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     I+++V+++G+ G GGA F T +K + + +        +++N  E EP    D  
Sbjct: 128 DLSHQQIVDKVRSAGIAGMGGAAFPTHIKLNPVSE-----IDLVIINGVECEPYISADDR 182

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      I +        +++Q AV +C      G  +   
Sbjct: 183 LMREYSQDILAGIGIIHRLLTPKRIVIAIEDNKPEAAKAMQTAVSQC------GLPAGS- 235

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I V      Y  G E  L++ + G++         PA +G+      V+NV +   
Sbjct: 236 ----IRVTVIPTKYPSGGEKQLIQIITGREV---PSGAIPAKLGI-----VVHNVGTAYA 283

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   + +G               ++ +++G +V+ P      +    D ++         
Sbjct: 284 IHQAVTQGKPLV----------ERVVTVTGKNVSKPGNYWLPIGTPVDHVLT----ATEF 329

Query: 276 GWDNLLAVIPGGSSVP 291
             +    VI GG  + 
Sbjct: 330 TPEPDQKVIIGGPMMG 345


>gi|153000587|ref|YP_001366268.1| electron transport complex protein RnfC [Shewanella baltica OS185]
 gi|151365205|gb|ABS08205.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS185]
          Length = 885

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 115/340 (33%), Gaps = 58/340 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     I+++V+++G+ G GGA F T +K + + +        +++N  E EP    D  
Sbjct: 128 DLSHQQIVDKVRSAGIAGMGGAAFPTHIKLNPVSE-----IDLVIINGVECEPYISADDR 182

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      I +        +++QAAV +C      G  +   
Sbjct: 183 LMREYSQDILAGIGIIHRLLTPKRIVIAIEDNKPEAAKAMQAAVSQC------GLPAGS- 235

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I V      Y  G E  L++ + G++         PA +G+      V+NV +   
Sbjct: 236 ----IRVTVIPTKYPSGGEKQLIQIITGREV---PSGAIPAKLGI-----VVHNVGTAYA 283

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   + +G               ++ +++G +V  P      +    D ++         
Sbjct: 284 INQAVTQGKPLV----------ERVVTVTGRNVGKPGNYWLPIGTPVDHVLT----ATEF 329

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL-----KEMGSGLGTAAVIVMDRSTDII 330
             +    VI GG  +    A      +   + +     +E+GS     A I         
Sbjct: 330 TPEPDQKVIIGGPMMGHALANIQVPILKGTNCILVPSSQEIGSTPEEKACIRCGECATAC 389

Query: 331 KAIWRLSVFYKHES--------------CGQCTPCREGTG 356
            A+      + H                C +C  C     
Sbjct: 390 PALLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429


>gi|217973446|ref|YP_002358197.1| electron transport complex protein RnfC [Shewanella baltica OS223]
 gi|217498581|gb|ACK46774.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS223]
          Length = 876

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 115/340 (33%), Gaps = 58/340 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +     I+++V+++G+ G GGA F T +K + + +        +++N  E EP    D  
Sbjct: 128 DLSHQQIVDKVRSAGIAGMGGAAFPTHIKLNPVSE-----IDLVIINGVECEPYISADDR 182

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      I +        +++QAAV +C      G  +   
Sbjct: 183 LMREYSQDILAGIGIIHRLLTPKRIVIAIEDNKPEAAKAMQAAVSQC------GLPAGS- 235

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I V      Y  G E  L++ + G++         PA +G+      V+NV +   
Sbjct: 236 ----IRVTVIPTKYPSGGEKQLIQIITGREV---PSGAIPAKLGI-----VVHNVGTAYA 283

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   + +G               ++ +++G +V  P      +    D ++         
Sbjct: 284 INQAVTQGKPLV----------ERVVTVTGRNVGKPGNYWLPIGTPVDHVLT----ATEF 329

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL-----KEMGSGLGTAAVIVMDRSTDII 330
             +    VI GG  +    A      +   + +     +E+GS     A I         
Sbjct: 330 TPEPDQKVIIGGPMMGHALANIQVPILKGTNCILVPSSQEIGSTPEEKACIRCGECATAC 389

Query: 331 KAIWRLSVFYKHES--------------CGQCTPCREGTG 356
            A+      + H                C +C  C     
Sbjct: 390 PALLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429


>gi|218549355|ref|YP_002383146.1| propanediol utilization protein: ferredoxin pduS [Escherichia
           fergusonii ATCC 35469]
 gi|218356896|emb|CAQ89528.1| putative propanediol utilization protein: ferredoxin pduS
           [Escherichia fergusonii ATCC 35469]
          Length = 446

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 98/301 (32%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          +    +VNA E EP    D+ +M  +   L  G +    A GA 
Sbjct: 29  FPTWVKLQA-------QVDTFLVNAAECEPMLKVDQQLMAQQAERLARGVLYGMKATGAS 81

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++    +    A+ E   +             +I +H     Y  G+E   +
Sbjct: 82  HGIIALKEKYQPAIK----ALSELLPA-------------EIRLHILPDVYPAGDEVLTI 124

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P   P     V        VNNV+++  +   + +G +             
Sbjct: 125 WLATGRRVPPAALPVSVGVV--------VNNVQTVLNIARAVEQGLAVTR---------- 166

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + I+  E+++   G            I GG  +  L      
Sbjct: 167 RTLTVNGAVARPVTLTVPIGISLREVLQMAGGATIDTP----GFINGGPMMGSLITS--L 220

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+         +      C QC  C +   
Sbjct: 221 DTPVSKT----------TGGLLVLPDSHPLIQRRKQNDNAVLSVARTVCEQCRLCTDLCP 270

Query: 357 W 357
            
Sbjct: 271 R 271


>gi|306819952|ref|ZP_07453603.1| propanediol utilization protein PduS [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551988|gb|EFM39928.1| propanediol utilization protein PduS [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 442

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 112/326 (34%), Gaps = 63/326 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +           Y+++NA E EP    D+ IM      +I G  +A   + A 
Sbjct: 20  FPTHVKLASKAD-------YILMNAAECEPLLRVDQQIMDVYCDDIIHGFEMAGRLVEAK 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++ +  +  + L+  +            S+L  D  I V+     Y  G+E  L+
Sbjct: 73  KAIIGIKYKHKQVIQKLRQRI------------SELDLDDYISVNELKDVYPAGDEQVLV 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L G+      +   P NVG       V N E+   +   +    +    +        
Sbjct: 121 YELTGRVV---PEMGIPLNVG-----CVVVNSETCLNIYNSM-NDVAVTDSY-------- 163

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
              +I+G ++ PCT++  +     +L E         +     +I GG  +  L +    
Sbjct: 164 --VTIAGDIDNPCTLKVPVGTPLMKLFELVNIRNIEDY----GIIDGGPMMGPLLSNL-- 215

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
                     E      +   I++ +   +IK         K  + G C  CR  T    
Sbjct: 216 ----------ESSVTKKSKGYILLKKEHSLIKNKGVDQAQAKKLNRGSCEQCRMCTDLCP 265

Query: 360 RVM-------ERLVKGIAQKREIDLL 378
           R +        ++V    Q   ID L
Sbjct: 266 RYLLGHNLQPHKMV--RTQAYNIDDL 289


>gi|317133224|ref|YP_004092538.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ethanoligenens harbinense YUAN-3]
 gi|315471203|gb|ADU27807.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ethanoligenens harbinense YUAN-3]
          Length = 614

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           ++        +        F + ++CG+C PCR G   +  ++E ++   A  + ++L+ 
Sbjct: 27  IVASPPGLCPVDMAASFLKFCRAQTCGKCVPCRIGLAQLENLLEDVLDHRADMQTLELIE 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             ++ I     CA+G  AA  +   +  FR    E I  + RC 
Sbjct: 87  RTARVIAASADCAIGWEAANMVLKGVHGFRDDYIEHIT-HGRCT 129


>gi|154497258|ref|ZP_02035954.1| hypothetical protein BACCAP_01551 [Bacteroides capillosus ATCC
           29799]
 gi|150273657|gb|EDN00785.1| hypothetical protein BACCAP_01551 [Bacteroides capillosus ATCC
           29799]
          Length = 452

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 112/339 (33%), Gaps = 60/339 (17%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K S   +         +VNA E EP    D+ + R  P  ++      +  +GA 
Sbjct: 20  FPTHVKLSAKAE-------CFLVNAAECEPLIETDKYLCRTFPDRIVAAAAAIAAHLGAK 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++G++  E  +L+ ++    A               + +      Y  G+E  ++
Sbjct: 73  RTVIALKGKYKAEIAALEDSISRLNA--------------PVEIFKMKTFYPAGDEQTMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + + G+    R     P +VG       V+NV ++  +   L            +     
Sbjct: 119 QQVTGRSVPERG---LPLDVG-----CVVDNVGTLLNIMDALE-----------DRPVTD 159

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  S+ G V  P  +   +     E +      I        A+I GG          M 
Sbjct: 160 KYLSVVGEVKEPIMLHVPIGTPLTECVAAAAPTI-----TKYAIIVGGP--------MMG 206

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             + D   ++       T  +IV+     + +         +H++   C  CR  T    
Sbjct: 207 KVLTDPAAIEAAVVTKTTGNIIVLPPDHYLFRRATLSMDAIRHQAKSACIQCRMCTDLCP 266

Query: 360 RVM-------ERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           R +         +++ + +++ ++   E          C
Sbjct: 267 RYLIGHQIRPHLMMRNLWREKSVEDKEEYLATFGDAANC 305


>gi|160875223|ref|YP_001554539.1| electron transport complex protein RnfC [Shewanella baltica OS195]
 gi|160860745|gb|ABX49279.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS195]
 gi|315267416|gb|ADT94269.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS678]
          Length = 888

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 100/317 (31%), Gaps = 58/317 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K + + +        +++N  E EP    D  +MR     ++ G  I    +   
Sbjct: 151 FPTHIKLNPVSE-----IDLVIINGVECEPYISADDRLMREYSQDILAGIGIIHRLLTPK 205

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        +++QAAV +C      G  +       I V      Y  G E  L+
Sbjct: 206 RIVIAIEDNKPEAAKAMQAAVSQC------GLPAGS-----IRVTVIPTKYPSGGEKQLI 254

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + + G++         PA +G+      V+NV +   +   + +G               
Sbjct: 255 QIITGREV---PSGAIPAKLGI-----VVHNVGTAYAINQAVTQGKPLV----------E 296

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G +V  P      +    D ++           +    VI GG  +    A   
Sbjct: 297 RVVTVTGTNVGKPGNYWLPIGTPVDHVLT----ATEFTPEPDQKVIIGGPMMGHALANIQ 352

Query: 299 RGAIMDYDGL-----KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES--------- 344
              +   + +     +E+GS     A I          A+      + H           
Sbjct: 353 VPILKGTNCILVPSSQEIGSTPEEKACIRCGECATACPALLLPQQLFWHAKAEEYDKAAS 412

Query: 345 -----CGQCTPCREGTG 356
                C +C  C     
Sbjct: 413 YNLKDCIECGCCSYVCP 429


>gi|120554169|ref|YP_958520.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Marinobacter aquaeolei VT8]
 gi|120324018|gb|ABM18333.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Marinobacter aquaeolei VT8]
          Length = 449

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 54/286 (18%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             L+ N  E EP   KD+ +++     L++G  +     GA    I ++ +       ++
Sbjct: 38  DVLIANGAECEPLLYKDQTVIQRFSAELLQGMALLMEQTGASRGVIAIKEKHQDSISHIE 97

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
                     LL  N        I +      Y  G+E  L+  + G +         P 
Sbjct: 98  ---------PLLPGN--------IELKQMRNTYPAGDEYELVYEITGNRI---PAGGLPK 137

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTK-LFSISGHVNYPCTVEE 256
           ++G+      V NVE++  +    +             +  T+ + ++ G V +P T   
Sbjct: 138 DIGV-----LVQNVETLVNIARAAQ------------GHPVTRTMITVHGEVEHPFTAWL 180

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLG 316
            + + F ++I                VI GG+ +  +         +             
Sbjct: 181 PIGMRFADVISLAGAITCDDP----VVIDGGAMMGQVVDDM--DTPISAVS--------- 225

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVM 362
            + ++V+ R T++++        YK      C  C   T    R +
Sbjct: 226 -SGLLVLPRDTNLVRRRSETEQQYKRIGKSGCDQCTLCTEMCPRYL 270


>gi|255523453|ref|ZP_05390422.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|296184736|ref|ZP_06853147.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium
           carboxidivorans P7]
 gi|255512911|gb|EET89182.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|296050518|gb|EFG89941.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Clostridium
           carboxidivorans P7]
          Length = 442

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 107/320 (33%), Gaps = 54/320 (16%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           ++  VK +G+ G GGAGF T  K +        +  Y+++N  E EP    D+ +M   P
Sbjct: 3   LLEMVKDAGVIGAGGAGFPTHAKLTS-------KSEYILLNGAECEPLLRVDQQLMELFP 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +I+G   A   + A  A I ++G+  +    L+  ++                   + 
Sbjct: 56  DEIIKGFEAAGKFVEARKAIIGIKGKHKKVISILRERIEALKVGDF------------VE 103

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           V      Y  G+E  L+  L G+      +   P  VG       V N E+   +    +
Sbjct: 104 VKELPDIYPVGDEQVLVYELTGRVV---PEAGIPIQVG-----CVVVNSETALNIYNASQ 155

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                            K  +++G +    TV+  +     ++++         +    A
Sbjct: 156 -----------GEAVTEKYITVAGDIPNRLTVKVPIGTPIIDVLKLSGIENFDNY----A 200

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
           VI GG  +  + +                         +++ +   +I+         K 
Sbjct: 201 VIDGGPMMGPVMSSIDGYITKK------------NKGFVILKKDHFLIRRKSMNIEQAKR 248

Query: 343 ESCGQCTPCREGTGWMMRVM 362
            +   C  CR  T    R +
Sbjct: 249 VNRASCEQCRMCTDMCPRYL 268


>gi|295102102|emb|CBK99647.1| electron transport complex, RnfABCDGE type, C subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 440

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 113/363 (31%), Gaps = 69/363 (19%)

Query: 24  MSRGHWDNVDKILE----KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           +       VD  ++      +   +  V+ SGL G GGAGF T +K         D    
Sbjct: 100 IKTDGRQTVDPAVKAPEVTDKASFLAAVRESGLVGLGGAGFPTDVKLQ-----PKDPVDT 154

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L++NA E E     D   M +    ++ G        G     I +        + L   
Sbjct: 155 LLINASECEVWLTSDTQEMLNCADDIVRGIEAVLKYTGIPKCVIGIENNKPECIDLLCQ- 213

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                         K      I V      Y  G E  L+E   G++         PA  
Sbjct: 214 --------------KTKDKPAIEVKPLPSVYGTGAELILIEKCLGREV---PHGGLPAAA 256

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESM 258
           G       V NV S++ +   L  G    S          ++ ++ G     P  +   +
Sbjct: 257 G-----AIVMNVTSVSSLGKYLATGMPVVS----------RVITVDGDACEKPQNLIVPV 301

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
             ++++++                +  G +    +  G M G  +         +   T+
Sbjct: 302 GTSYEDVLNTAG------------LKGGVTLGKVVAGGAMMGPAVRDLSYP---TTKTTS 346

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLL 378
            +I++  +T         +   +   C +C  C E     +  +E  V      R++  L
Sbjct: 347 GLIMLSEAT---------AQPPQVNPCIRCGRCVEYCPMGLEPVE--VNQAYAARDVQEL 395

Query: 379 YEV 381
            ++
Sbjct: 396 GKL 398


>gi|139438950|ref|ZP_01772410.1| Hypothetical protein COLAER_01416 [Collinsella aerofaciens ATCC
           25986]
 gi|133775661|gb|EBA39481.1| Hypothetical protein COLAER_01416 [Collinsella aerofaciens ATCC
           25986]
          Length = 615

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           + V   +   ++    L      +SCG+CTPCR G   +  ++  +++G A +  ++L+ 
Sbjct: 32  LAVSSLAPCPVEFTAALVNLCSTQSCGKCTPCRVGLSALSDLLADVLEGRADESTLNLIE 91

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
             ++ I   + CA+G  A       I+ FR   E  I + H C F 
Sbjct: 92  RTARTIYLSSDCAIGYEAGAMALTAIRGFRDDFEHHIRE-HSCGFD 136


>gi|85059431|ref|YP_455133.1| putative iron-sulfur binding NADH dehydrogenase [Sodalis
           glossinidius str. 'morsitans']
 gi|84779951|dbj|BAE74728.1| putative iron-sulfur binding NADH dehydrogenase [Sodalis
           glossinidius str. 'morsitans']
          Length = 663

 Score = 88.1 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 107/353 (30%), Gaps = 71/353 (20%)

Query: 29  WDNVDKILE---KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNAD 85
           W  +  +++        +++ +  SG+ G GGAGF T  K              L++N  
Sbjct: 118 WVALKPLVDFQHSSSAQLLSRIHESGIAGLGGAGFPTAAKLG----GGEHGVETLIINGA 173

Query: 86  ESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYA 145
           E EP    D  +MR     ++ G  I    +      + +          L+ A+ E   
Sbjct: 174 ECEPYITADDRLMREHARDIVTGMAILHHMLRPRRLLLGIEDNKPAAIAVLKDALCE--- 230

Query: 146 SGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
                     G      +      Y  G    L + L GK+          A +G+    
Sbjct: 231 -------HPTG-----ELRVIPTKYPSGGAKQLTKILTGKEVPV---GQHSAAIGV---- 271

Query: 206 TTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDE 264
             + NV ++  +   +  G +             ++ +++G  +  P  V   +      
Sbjct: 272 -VMLNVGTVYAIKRAVVDGEALT----------ERVVTLTGEALARPGNVWARLGTPVSH 320

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM 323
           L+                VI GG  +   LPA                          V+
Sbjct: 321 LLAHAGFMPAAEP----TVIMGGPLMGFTLPA---LDVP-------------------VV 354

Query: 324 DRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
             S  ++    +     + E SC +C+ C +      + + +    +G    +
Sbjct: 355 KISNCLLAPSVQELAPAEPEQSCIRCSRCADACPASLLPQQLYWFSRGQEHDK 407


>gi|292488196|ref|YP_003531078.1| electron transport complex protein RnfC [Erwinia amylovora
           CFBP1430]
 gi|292899402|ref|YP_003538771.1| electron transport complex protein [Erwinia amylovora ATCC 49946]
 gi|291199250|emb|CBJ46367.1| electron transport complex protein [Erwinia amylovora ATCC 49946]
 gi|291553625|emb|CBA20670.1| Electron transport complex protein rnfC [Erwinia amylovora
           CFBP1430]
          Length = 750

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 114/359 (31%), Gaps = 78/359 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +  +     L++NA E EP    D  +M+     ++EG  I ++ + A 
Sbjct: 152 FPTATKLKGGLRGVN----TLIINAAECEPYITADDRLMQDCAAEVLEGSRIMAWILQAD 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +     +   +L+ A+ +                 D+ +      Y  G    L 
Sbjct: 208 RVLIGIEDNKPQAITALRKALGDAT---------------DLHIRVIPTKYPSGGARQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+     +     ++G+      + NV +   V   +  G               
Sbjct: 253 KILTGKEV---PQGGRSGDIGV-----LMQNVGTAFAVKRAIIDGEPLT----------E 294

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  V+ P  V   +      L++               V+ GG  +   LP   
Sbjct: 295 RVVTLTGKSVSQPGNVWARLGTPVSHLLQHAG----FTPAAEQMVVMGGPLMGFTLPT-- 348

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG- 356
                                 V+ +     +  A+  +      ++C +C+ C +    
Sbjct: 349 -LDVP-----------------VVKITNCI-LAPAVSEMGQNAAEKNCIRCSACADACPA 389

Query: 357 -WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             + + +    +G     +    + ++  IE    C    A A+       L++ +R  
Sbjct: 390 ALLPQQLYWFSRGGDH--DKARAHNIADCIE----CG---ACAYVCPSNIPLVQYYRQE 439


>gi|153931418|ref|YP_001384657.1| putative electron transport protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936812|ref|YP_001388178.1| putative electron transport protein [Clostridium botulinum A str.
           Hall]
 gi|152927462|gb|ABS32962.1| putative electron transport protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932726|gb|ABS38225.1| putative electron transport protein [Clostridium botulinum A str.
           Hall]
          Length = 434

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 77/236 (32%), Gaps = 46/236 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             Y++ N  E EP    +   +  EP T+I+G   A  A  A 
Sbjct: 97  FPTHIKLK-----ADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAP 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++G+     + L+  +                   DI V      Y  GEE A++
Sbjct: 152 KGYIAIKGKHENAIKILKDHLKGAS---------------DIEVKELQDIYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ GK  +P   P              V N E++A +   +                  
Sbjct: 197 HAILGKWLEPTQLP--------LEAKCVVINGETLANITRAVEDRKPVID---------- 238

Query: 240 KLFSISGHVNYP----CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           K  +I G +         ++  +     +LIE+  G      +    V+ GG    
Sbjct: 239 KDITIIGKLKTGNKPNVLLDVPVGTPIHDLIEECGGIDGEFGE----VVIGGPYTG 290


>gi|238919984|ref|YP_002933499.1| electron transport complex protein RnfC [Edwardsiella ictaluri
           93-146]
 gi|259494050|sp|C5BDE7|RNFC_EDWI9 RecName: Full=Electron transport complex protein rnfC
 gi|238869553|gb|ACR69264.1| electron transport complex protein RnfC [Edwardsiella ictaluri
           93-146]
          Length = 800

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 114/340 (33%), Gaps = 63/340 (18%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
                 +I+ +  +G+ G GGAGF T  K +      +DR + L++NA E EP    D  
Sbjct: 129 AMTPPALIDHIHQAGIAGLGGAGFPTAAKLN----GGADRINTLIINAAECEPYITADDR 184

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ GC I S  +      I +     +   +L+ A+                
Sbjct: 185 LMREHAAEIVSGCAILSHILAPERVLIGIEDNKPQAIAALRHALQCHEK----------- 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I +      Y  G    L++ L G +          A++G+      + NV ++  
Sbjct: 234 ----IQLRVIPTKYPSGGAKQLIKILTGMEV---PHGRHSASIGV-----LMQNVATVYA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G  ++ P  V  ++      L++   G I  
Sbjct: 282 IKRAVIDGEPLI----------ERVVTLTGEQMHRPGNVWAAIGTPVKHLLQN-GGLIAQ 330

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
                  VI GG  +                 L  +G  +      ++  S D       
Sbjct: 331 NKHP--MVIMGGPLMGF--------------TLSRLGVPVVKITNCILTPSRD------E 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            SV    + C +C  C +      + + +    +G    +
Sbjct: 369 FSVPQAEQPCIRCGACADVCPARLLPQQLYWFSQGKEHDK 408


>gi|168182559|ref|ZP_02617223.1| putative electron transport protein [Clostridium botulinum Bf]
 gi|237795920|ref|YP_002863472.1| putative electron transport protein [Clostridium botulinum Ba4 str.
           657]
 gi|182674195|gb|EDT86156.1| putative electron transport protein [Clostridium botulinum Bf]
 gi|229261354|gb|ACQ52387.1| putative electron transport protein [Clostridium botulinum Ba4 str.
           657]
          Length = 434

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 75/236 (31%), Gaps = 46/236 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             Y++ N  E EP    +   +  EP T+I+G   A  A  A 
Sbjct: 97  FPTHIKLK-----ADIPDGYVIANCVECEPALHHNITFIEKEPDTIIKGLRYAMKATNAP 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +     + L+  +                   DI V      Y  GEE A++
Sbjct: 152 KGYIAIKCKHENAIKILKDHLKGAS---------------DIEVKELQDIYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ GK  +P   P              V N E++A +   +                  
Sbjct: 197 HAILGKWLEPTQLP--------LEAKCVVINGETLANITRAVEDRKPVID---------- 238

Query: 240 KLFSISGHVNYP----CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           K  +I G +          +  +     +LIE+  G      +    V+ GG    
Sbjct: 239 KDITIIGKLKTGNKPNVLFDVPVGTPIHDLIEECGGIDGEFGE----VVIGGPYTG 290


>gi|148380438|ref|YP_001254979.1| electron transferring subunit of proline reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|148289922|emb|CAL84033.1| putative electron transferring subunit of proline reductase
           [Clostridium botulinum A str. ATCC 3502]
          Length = 434

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 77/236 (32%), Gaps = 46/236 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             Y++ N  E EP    +   +  EP T+I+G   A  A  A 
Sbjct: 97  FPTHIKLK-----ADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAP 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++G+     + L+  +                   DI V      Y  GEE A++
Sbjct: 152 KGYIAIKGKHENAIKILKDHLKGAS---------------DIEVKELQDIYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ GK  +P   P              V N E++A +   +                  
Sbjct: 197 HAILGKWLEPTQLP--------LEAKCVVINGETLANIKRAVEDRKPVID---------- 238

Query: 240 KLFSISGHVNYP----CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           K  +I G +         ++  +     +LIE+  G      +    V+ GG    
Sbjct: 239 KDITIIGKLKTGNKPNVLLDVPVGTPIHDLIEECGGIDGEFGE----VVIGGPYTG 290


>gi|302335611|ref|YP_003800818.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Olsenella uli DSM 7084]
 gi|301319451|gb|ADK67938.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Olsenella uli DSM 7084]
          Length = 607

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
               ++           +SCG+CTPCR G   +  +MER++ G A++  IDL+   ++ I
Sbjct: 33  EPCPVEFSAAFVRMCMTQSCGKCTPCRIGLPALGELMERVLDGTAEEYTIDLIERTAEAI 92

Query: 386 EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
              + CA+G  A       ++ FR   E  + ++H C F+
Sbjct: 93  YLSSDCAIGYEAGEMALEAVRGFRDDFEFHL-RHHACGFE 131


>gi|116619839|ref|YP_821995.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116223001|gb|ABJ81710.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 436

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 104/331 (31%), Gaps = 68/331 (20%)

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
           +  +++ N  E EP   KD ++M+H    +++G      A GA      V+ +     E+
Sbjct: 28  QVEFMIANGAECEPLIHKDAELMKHFAPGILDGMTSMMSATGAQKGKFGVKTKNAESIEA 87

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           L+ ++                    I        Y  G+E  L+ +  G+   P      
Sbjct: 88  LKHSLKNDR----------------IEFVMLGDFYPSGDEYELVYTATGRLIPP---AGI 128

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE 255
           P  VG       VNNVE++  V               RE     K  S++G V    +  
Sbjct: 129 PLQVG-----CVVNNVETLYNVSLA-----------EREIPVTEKFLSVTGAVKEAKSFW 172

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGL 315
             +  +F ELI +  G     +   ++ +  G+         +   +             
Sbjct: 173 APVGTSFRELIARAGGATVEDYGIFVSGLMMGTLT-----FDLDDVVT-----------K 216

Query: 316 GTAAVIVMDRSTDIIKAIWRL---SVFYKHESCGQCTPCREGTGWM--------MRVMER 364
            T  +I++ R   +I    R           +C QC+ C E              +VM  
Sbjct: 217 TTGGLILLPRDHYLITRKTRSTTEMAHIGKSACDQCSYCTEFCPRYLLGYEVMPHKVMRS 276

Query: 365 LVKGIAQKREIDLLYEVSKNIEGRTICALGD 395
           L   +      +   E+         C L  
Sbjct: 277 LGFTLTGGDIWNQWSELC------CACGLCT 301


>gi|188533914|ref|YP_001907711.1| Electron transport complex protein [Erwinia tasmaniensis Et1/99]
 gi|226735445|sp|B2VEQ3|RNFC_ERWT9 RecName: Full=Electron transport complex protein rnfC
 gi|188028956|emb|CAO96822.1| Electron transport complex protein [Erwinia tasmaniensis Et1/99]
          Length = 804

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 112/375 (29%), Gaps = 72/375 (19%)

Query: 33  DKILEKGRDWIINEVKASGLRGRG---------GAGFSTGMKWSFMPKVCSDRPHYLVVN 83
           D+  EK        V+ S L  R          GAGF T  K     K      + L++N
Sbjct: 116 DRWCEKRPLEDYRSVERSELVARVHQAGVAGLGGAGFPTASKL----KGGLHGVNTLIIN 171

Query: 84  ADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDEC 143
           A E EP    D  +M+     ++EG  I ++ + A    I +         +L+ A+   
Sbjct: 172 AAECEPYITADDRLMQDHAAEVLEGSRILAWILQAERVLIGIEDNKPEAIAALKKALGSA 231

Query: 144 YASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYG 203
                           D+ +      Y  G    L + L GK+           ++G+  
Sbjct: 232 T---------------DLHIRVIPTKYPSGGAKQLTKILTGKEV---PHGGRSTDIGV-- 271

Query: 204 CPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITF 262
               + NV +   V   +  G               ++ +++G  V  P  V   +    
Sbjct: 272 ---LMQNVGTAFAVKRAIIDGEPLT----------ERVVTLTGESVAQPGNVWARLGTPI 318

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG----- 316
             L++               V+ GG  +   LP   +    +    L    S +G     
Sbjct: 319 SHLLQHAGFIPGAE----QMVVMGGPLMGFTLPTLDVPVVKITNCILAPAASEMGQNEAE 374

Query: 317 TAAV-IVMDRSTDIIKAIWRLSVFYKH------------ESCGQCTPCREGTGWMMRVME 363
              +             + +   +Y                C +C  C       + +++
Sbjct: 375 QGCIRCSACADACPAALLPQQLYWYSRGGDHDKARAHNIADCIECGACAYVCPSNIPLVQ 434

Query: 364 --RLVKGIAQKREID 376
             R  K   Q  +++
Sbjct: 435 YYRQEKAEIQAIDLE 449


>gi|325663070|ref|ZP_08151520.1| hypothetical protein HMPREF0490_02260 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470524|gb|EGC73754.1| hypothetical protein HMPREF0490_02260 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 438

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 85/252 (33%), Gaps = 48/252 (19%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
             V  +G+ G GGAGF T +K S           Y++VNA E EPG C +   +  +   
Sbjct: 80  EMVAYAGITGMGGAGFPTAVKLS-----ADLHGGYILVNAAECEPGLCHNIRQIEEQCDK 134

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164
           +I G         A  A +               A+ +     +      L  + +I ++
Sbjct: 135 IIRGVKYCMELTNASKAIV---------------AIKKKNEKAVRVLKEALKEEEEITLY 179

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT----TVNNVESIAVVPTI 220
                Y  GEE A++    G              +G+   PT     V NVE+++ V   
Sbjct: 180 LLPDIYPMGEERAVVRECLG------------VELGVDQLPTAADAVVINVETVSRVAEA 227

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV-EESMSITFDELIEKHCGGIRGGWDN 279
           +      +       ++   +         P    +  +  +  ELIE+  G      + 
Sbjct: 228 IDERKPCF-------SKNVTVVGKLNGGEEPHVFLDVPIGTSIGELIERAGGINGIYGE- 279

Query: 280 LLAVIPGGSSVP 291
              +I GG    
Sbjct: 280 ---IIVGGPFTG 288


>gi|293374729|ref|ZP_06621037.1| electron transport complex, RnfABCDGE type, C subunit [Turicibacter
           sanguinis PC909]
 gi|292646643|gb|EFF64645.1| electron transport complex, RnfABCDGE type, C subunit [Turicibacter
           sanguinis PC909]
          Length = 462

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 126/338 (37%), Gaps = 47/338 (13%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             R+ I+  ++ +G+ G GG+GFST +K+     +  +  H +++N  E EP    D   
Sbjct: 124 LSREDIVEMIRKNGVVGLGGSGFSTYIKY-----LNPEGIHTVLINGVECEPYLTTDYHF 178

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M  +P    +G      A       I ++    + +  L+  +DE               
Sbjct: 179 MFDQPERFFDGISFLMKAADVKKGIIAIKKGKKKLKAFLEQKIDEYQVRDQ--------- 229

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              I V+    AY  G E  L++++ G++         P+ +G      TV+NV +    
Sbjct: 230 ---ISVYEVPDAYPLGWEKVLIKTITGREYD-----RLPSELGF-----TVSNVGTAIAT 276

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +R                 +L ++SG  +  P      +     ELI+   GG    
Sbjct: 277 SFAVRD----------NRPFIRRLVTVSGEGIKRPGLYYVRIGTPAKELIQ-LAGGYIDD 325

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D +  +I GG  +  +            +G+  + +          DR  DI+   ++ 
Sbjct: 326 ADEIK-IIVGGPMMGGVMRSDDFVISRGVNGIVVLPTKKKEGPDKGFDRIKDILWPNYKK 384

Query: 337 SVFYKHE-----SCGQCT-PCREGT-GWMMRVMERLVK 367
            V  + +     SCG+CT  C  G    +++ M +L  
Sbjct: 385 EVIMEKDEQPCVSCGRCTDHCPTGLQPVLIKDMAKLKD 422


>gi|88706626|ref|ZP_01104329.1| Electron transport complex protein rnfC [Congregibacter litoralis
           KT71]
 gi|88699122|gb|EAQ96238.1| Electron transport complex protein rnfC [Congregibacter litoralis
           KT71]
          Length = 587

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 92/317 (29%), Gaps = 60/317 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K   +P   +D    L++N  E EP    D  +MR     +I G  I +      
Sbjct: 141 FPTARK---LPGDSNDAIKTLIINGTECEPYITSDDALMRERADRIIAGVEILAHIARPK 197

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         + + A+                   D+ +      Y  G E  L+
Sbjct: 198 EILIGIEDNKPEAIAAFETALARRE---------------DMELVTFPTKYPSGGEKQLI 242

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           E L GK+         PA++G+        NV + A V   +  G              +
Sbjct: 243 EILTGKEV---PSGGLPASIGI-----LCQNVGTAAAVHDAIVLG----------RPLVS 284

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G         +  +    ++L+ +              +I GG  +    A   
Sbjct: 285 RVTTVTGESARNRGNFDVLLGTPMEDLLAQAD----YQPTVRQRLIMGGPMMGVTLADHR 340

Query: 299 RGAIMDYDGLKEMGSG------LGTAAV-IVMDRSTDIIKAIWRLSVFYKHES------- 344
              I   + L   G G         A +   +       + + +   ++           
Sbjct: 341 CPVIKTTNCLLVPGPGELPEPEPAQACIRCGLCAEACPARLLPQQLYWFARAQNHEQLEE 400

Query: 345 -----CGQCTPCREGTG 356
                C +C  C     
Sbjct: 401 HHLFDCIECGACSYVCP 417


>gi|325837597|ref|ZP_08166444.1| electron transport complex protein, RnfABCDGE type, C subunit
           [Turicibacter sp. HGF1]
 gi|325490899|gb|EGC93198.1| electron transport complex protein, RnfABCDGE type, C subunit
           [Turicibacter sp. HGF1]
          Length = 462

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 126/338 (37%), Gaps = 47/338 (13%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             R+ I+  ++ +G+ G GG+GFST +K+     +  +  H +++N  E EP    D   
Sbjct: 124 LSREDIVEMIRKNGVVGLGGSGFSTYIKY-----LNPEGIHTVLINGVECEPYLTTDYHF 178

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M  +P    +G      A       I ++    + +  L+  +DE               
Sbjct: 179 MFDQPERFFDGISFLMKAADVKKGIIAIKKGKKKLKAFLEQKIDEYQVRDQ--------- 229

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              I V+    AY  G E  L++++ G++         P+ +G      TV+NV +    
Sbjct: 230 ---ISVYEVPDAYPLGWEKVLIKTITGREYD-----RLPSELGF-----TVSNVGTAIAT 276

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +R                 +L ++SG  +  P      +     ELI+   GG    
Sbjct: 277 SFAVRD----------NRPFIRRLVTVSGEGIKRPGLYYVRIGTPAKELIQ-LAGGYIDD 325

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
            D +  +I GG  +  +            +G+  + +          DR  DI+   ++ 
Sbjct: 326 ADEIK-IIVGGPMMGGVMRSDDFVISRGVNGIVVLPTKKKEGPDKGFDRIKDILWPNYKK 384

Query: 337 SVFYKHE-----SCGQCT-PCREGT-GWMMRVMERLVK 367
            V  + +     SCG+CT  C  G    +++ M +L  
Sbjct: 385 EVIMEKDEQPCVSCGRCTDHCPTGLQPVLIKDMAKLKD 422


>gi|150388109|ref|YP_001318158.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149947971|gb|ABR46499.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Alkaliphilus metalliredigens QYMF]
          Length = 448

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 104/301 (34%), Gaps = 56/301 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K   + +       YL+VNA E EP    D+ I RH+   +I+   I    I A 
Sbjct: 20  FPTHIKLDGVAE-------YLLVNAVECEPLLETDKFITRHKSEEIIKAMEIMGNHIQAK 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ +  +E ++L+ A+    +               + +H     Y  G+E  L+
Sbjct: 73  EMVIGLKKKNTKEIQALREAIQCLKSK--------------VTLHLVENFYPAGDEQMLV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             +  ++  P   P              V NV ++  +   L            E     
Sbjct: 119 YEITKRQVPPGGIPK--------DVGVVVCNVGTVVNIYEALN-----------EKPVTH 159

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           KL +I G V  P  V   +    ++ IE   G     +     ++ GG          M 
Sbjct: 160 KLVTILGEVKNPSMVYAPIGTPIEKCIEMVGGPTIQAYR----IVLGGP---------MM 206

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI---WRLSVFYKHESCGQCTPCREGTG 356
           G +++   L +      T  +IV+     +++         +     +C QC+ C +   
Sbjct: 207 GRVIEKSQLNQEVVTKTTGGIIVLPEEHFMLRDKQQDLTQMINRSRSTCIQCSLCTDLCP 266

Query: 357 W 357
            
Sbjct: 267 R 267


>gi|117920614|ref|YP_869806.1| electron transport complex protein RnfC [Shewanella sp. ANA-3]
 gi|117612946|gb|ABK48400.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           sp. ANA-3]
          Length = 788

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 112/338 (33%), Gaps = 52/338 (15%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           +E     +I ++  +G+ G GGA F + +K + + +        +++N  E EP    D 
Sbjct: 126 IELSNHEMIAKIHGAGIAGMGGAAFPSHIKLNPVSE-----IELVIINGVECEPYISADD 180

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV-DECYASGLLGSNSK 154
            +MR     ++ G  I    +      I +        +++Q AV      +G       
Sbjct: 181 RLMREYSQDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQSALPAG------- 233

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                   V      Y  G E  L++ + G++         PA +G+      V+NV + 
Sbjct: 234 -----STRVTAIPTKYPSGGEKQLIQIITGREV---PSGAIPAKLGI-----VVHNVGTA 280

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGI 273
             +   + +G               ++ +++G +V  P      +    + +++      
Sbjct: 281 FAIHQAVTQG----------KPLIERVVTVTGQNVGKPGNYWLPIGTPVEHVLKYTEFNA 330

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGA-IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA 332
                 ++     G ++P +    ++G   +     +E+G+     A I      +   A
Sbjct: 331 EADQKVIIGGPMMGHALPTIQVPILKGTNCILVPSSQEIGTTPEEKACIRCGECANACPA 390

Query: 333 IWRLSVFYKHES--------------CGQCTPCREGTG 356
           +      + H                C +C  C     
Sbjct: 391 LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 428


>gi|225016064|ref|ZP_03705297.1| hypothetical protein CLOSTMETH_00008 [Clostridium methylpentosum
           DSM 5476]
 gi|224951061|gb|EEG32270.1| hypothetical protein CLOSTMETH_00008 [Clostridium methylpentosum
           DSM 5476]
          Length = 442

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 93/303 (30%), Gaps = 58/303 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K         D    LV+NA E EP    D  ++++E   +++G      A G  
Sbjct: 21  FPTAFKLR-------DGIDSLVINAAECEPLIYTDYYLLKNELSKVLKGATAMMEACGIP 73

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             ++ V+                      L          +I V      Y  G+E  ++
Sbjct: 74  NGYMAVKHHTAE----------------RLSWTHGQKLTSNISVSVMPDVYPMGDEIIMI 117

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G +  P  + P             VNNVE++  V   +  G               
Sbjct: 118 YQVLG-RIVPPGQLPGTVGA-------IVNNVETLYNVANAME-GIPVTD---------- 158

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +I+G V+   T +  +     E+ +     +  G      V+ GG ++   P     
Sbjct: 159 KWVTINGEVDNKVTFKVPIGTPIAEVFKTLGVTVPEGH----IVVDGGPAMGK-PVDPAT 213

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             I              T +++++  +     ++     F    +   C  C   +    
Sbjct: 214 AVIT-----------KTTKSLLILPDNIPCTASMLGSMKFTLTHAASNCCSCTMCSEMCP 262

Query: 360 RVM 362
           R +
Sbjct: 263 RAL 265


>gi|302879567|ref|YP_003848131.1| electron transport complex, RnfABCDGE type, C subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582356|gb|ADL56367.1| electron transport complex, RnfABCDGE type, C subunit [Gallionella
           capsiferriformans ES-2]
          Length = 555

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 121/407 (29%), Gaps = 85/407 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
                 + ++++A+G+ G GGA F + MK          +   LV+N  E EP    D  
Sbjct: 121 ALSHSELRHKLRAAGVVGLGGAVFPSDMKL----YSHKQKIKTLVLNGAECEPYITCDDM 176

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     +++G  +    + A    I +         +++A                 G
Sbjct: 177 LMRERAADILQGAEMMRSLLYAEEVLIGIEDNKPEAIAAMRA-------------AVAAG 223

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
              ++ V      Y  G    L+  L G +           N+G+        NV +   
Sbjct: 224 NHQNMEVIAVPTVYPGGGAKQLIRVLTGIEV---AAGVRSTNMGV-----QCFNVGTAYS 275

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
               +R G    S          ++ +++G+V  P   E  +    DEL+ +        
Sbjct: 276 AWRAIRFGEPLIS----------RIVTVTGNVAQPKNYEALIGTPMDELVAQAA-----P 320

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKA---- 332
                  I GG  +  L   +  G I   + +      +   A+  +        A    
Sbjct: 321 LPGTTDYIMGGPMMGVLMPSKQVGVIKATNCIIASSDAIFPKALPALPCIRCTRCAEVCP 380

Query: 333 -------------IWRL--SVFYKHESCGQCTPCREGTGWMMRVME--RLVKGIAQKREI 375
                           L  +  Y    C +C  C       + +++  R  K     R+ 
Sbjct: 381 SELQPQELYWFSKAKNLDKAEDYHLFDCIECGACSYVCPSNIPLVQYYRFAKSEIWARDA 440

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI-EERIDQYHR 421
           +                  DAA           R    E RI++  R
Sbjct: 441 NKKS--------------ADAARE---------RHEFRESRIEREKR 464


>gi|317492086|ref|ZP_07950517.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919969|gb|EFV41297.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 712

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 100/318 (31%), Gaps = 65/318 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG K          +   L++NA E EP    D  +MR     +I GC I    +   
Sbjct: 152 FPTGNKLE----GGYGKVETLIINAAECEPYITADDRLMREHADEIILGCEILGHILTPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+               G+D DI +      Y  G    L 
Sbjct: 208 RTLIGIEDNKPEAIAALKKALK--------------GHD-DIKLRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G +          A++G+      + NV ++  +   +  G               
Sbjct: 253 KILTGMEV---PFGKHSASIGV-----LMQNVGTVYAIKRAIINGEPLI----------E 294

Query: 240 KLFSISGHV-NYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G +   P  V   +      L++    G     +    VI GG  +        
Sbjct: 295 RVVTLTGELMKKPGNVWARLGTPVKHLLQ---AGEFEAQNRTPMVIMGGPLMGF------ 345

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG- 356
                           L   +V ++  S  I+          + E +C +C+ C +    
Sbjct: 346 ---------------TLAHLSVPIVKISNCILAPSKNEFDEAEEEQACIRCSQCADACPA 390

Query: 357 -WMMRVMERLVKGIAQKR 373
             + + +    +G   ++
Sbjct: 391 GLLPQQLYWFSRGKEHEK 408


>gi|253989598|ref|YP_003040954.1| electron transport complex protein RnfC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781048|emb|CAQ84210.1| electron transport complex protein rnfc [Photorhabdus asymbiotica]
          Length = 706

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 112/349 (32%), Gaps = 70/349 (20%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            + ++      G + I+N +  +G+ G GGAGF T  K     +        L++NA E 
Sbjct: 126 DYQSL------GAETILNRIHQAGIAGLGGAGFPTASKL----QSGRSGIKTLIINAAEC 175

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +M+     LIEG  I    +      I +         +L+ A+       
Sbjct: 176 EPYITADDRLMQEHADELIEGIRILEHLLKPEQILIGIEDNKPEAIAALKTALKG----- 230

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                     D  IIV      Y  G    L + L GK+          + +G+      
Sbjct: 231 ----------DKTIIVRVIPTKYPSGGAKQLTKILTGKEV---PSGGRSSAIGV-----L 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELI 266
           + NV ++  +   +  G               ++ +++G  V  P      +      L+
Sbjct: 273 MQNVGTVVAIKRAIIDGEPLIQ----------RVVTVTGDNVTSPGNFWARLGTPVQFLL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           +           +   VI GG  +                 L ++   +   +  ++  S
Sbjct: 323 QLAG----FEPQSEQMVIMGGPLMGF--------------TLPDLNVPVVKISNCILVPS 364

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
              + A          E+C +C  C E      + + +    +G   ++
Sbjct: 365 HQEMDAN------TAEEACIRCGLCVEACPASLLPQQLYWFSRGQEHEK 407


>gi|120602428|ref|YP_966828.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio vulgaris DP4]
 gi|120562657|gb|ABM28401.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio vulgaris DP4]
          Length = 673

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 60/128 (46%)

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G ++  +P          ++    + + +G     V +   +++ A+W+       ESCG
Sbjct: 18  GKALFEIPDAPGFEGFDTFNQGNSIRAFVGDRGFFVFEPGVNLLDALWQYMERAARESCG 77

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           +CTPCR GTG +   +  L++       +  L E+++ +   ++C LG      + G ++
Sbjct: 78  KCTPCRVGTGIIRDSLAALLRDGVGSGGLGTLVELAEQVRSTSLCGLGRTCTVALCGALE 137

Query: 407 NFRPLIEE 414
           +F+ ++ E
Sbjct: 138 HFQDMLVE 145


>gi|46580182|ref|YP_010990.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449599|gb|AAS96249.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233827|gb|ADP86681.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio vulgaris RCH1]
          Length = 673

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 60/128 (46%)

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G ++  +P          ++    + + +G     V +   +++ A+W+       ESCG
Sbjct: 18  GKALFEIPDAPGFEGFDTFNQGNSIRAFVGDRGFFVFEPGVNLLDALWQYMERAARESCG 77

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           +CTPCR GTG +   +  L++       +  L E+++ +   ++C LG      + G ++
Sbjct: 78  KCTPCRVGTGIIRDSLAALLRDGVGSGGLGTLVELAEQVRSTSLCGLGRTCTVALCGALE 137

Query: 407 NFRPLIEE 414
           +F+ ++ E
Sbjct: 138 HFQDMLVE 145


>gi|312172333|emb|CBX80590.1| Electron transport complex protein rnfC [Erwinia amylovora ATCC
           BAA-2158]
          Length = 710

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 114/359 (31%), Gaps = 78/359 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +  +     L++NA E EP    D  +M+     ++EG  I ++ + A 
Sbjct: 152 FPTATKLKGGLRGVN----TLIINAAECEPYITADDRLMQDCAAEVLEGSRIMAWILQAD 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +     +   +L+ A+ +                 D+ +      Y  G    L 
Sbjct: 208 RVLIGIEDNKPQAITALRKALGDAT---------------DLHIRVIPTKYPSGGARQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+     +     ++G+      + NV +   V   +  G               
Sbjct: 253 KILTGKEV---PQGGRSGDIGV-----LMQNVGTAFAVKRAIVDGEPLT----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  V+ P  V   +      L++               V+ GG  +   LP   
Sbjct: 295 RVVTLTGESVSQPGNVWARLGTPVSHLLQHAG----FTPAAEQMVVMGGPLMGFTLPT-- 348

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG- 356
                                 V+ +     +  A+  +      ++C +C+ C +    
Sbjct: 349 -LDVP-----------------VVKITNCI-LAPAVSEMGQNAAEKNCIRCSACADACPA 389

Query: 357 -WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             + + +    +G     +    + ++  IE    C    A A+       L++ +R  
Sbjct: 390 ALLPQQLYWFSRGGDH--DKARAHNIADCIE----CG---ACAYVCPSNIPLVQYYRQE 439


>gi|261367571|ref|ZP_05980454.1| Fe(III) reductase, beta subunit [Subdoligranulum variabile DSM
           15176]
 gi|282570358|gb|EFB75893.1| Fe(III) reductase, beta subunit [Subdoligranulum variabile DSM
           15176]
          Length = 611

 Score = 86.6 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G   +  ++E ++   A +  IDL+ + +  I  
Sbjct: 35  CPVDMALNFLRLCHAQTCGKCVPCRIGLSQLETLLESVLDQTAPEGTIDLIEQTAAAIVD 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
              CA+G  AA  +   ++ FR   EE    Y RC
Sbjct: 95  SADCAIGYEAAAMVLQGVRGFREDYEEH-AHYGRC 128


>gi|148380437|ref|YP_001254978.1| electron transferring subunit of proline reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153937803|ref|YP_001388176.1| NADH dehydrogenase family protein [Clostridium botulinum A str.
           Hall]
 gi|168180638|ref|ZP_02615302.1| putative electron transport protein [Clostridium botulinum NCTC
           2916]
 gi|148289921|emb|CAL84031.1| putative electron transferring subunit of proline reductase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152933717|gb|ABS39216.1| NADH dehydrogenase family protein [Clostridium botulinum A str.
           Hall]
 gi|182668526|gb|EDT80505.1| putative electron transport protein [Clostridium botulinum NCTC
           2916]
          Length = 372

 Score = 86.6 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 72/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNMKVIEETPELIINGIKYAMKATNSK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +  +    L+ A+                   DI +      Y  GEE A++
Sbjct: 152 KGYIAIKSKHEKAVRVLEEALKNVS---------------DIEIKLLKDLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPI--------AAKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNVFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|302386042|ref|YP_003821864.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           saccharolyticum WM1]
 gi|302196670|gb|ADL04241.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           saccharolyticum WM1]
          Length = 440

 Score = 86.6 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 148/419 (35%), Gaps = 76/419 (18%)

Query: 5   QDRIFTNLYGLQGKSLSD---SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFS 61
           + R+  N   +Q   + +     +   +          ++ I N VK +G+ G GGAGF 
Sbjct: 84  EPRLVANGSMVQSVIIENDGKYQTVEGFGKERDPKSLSKEEIRNLVKEAGVVGLGGAGFP 143

Query: 62  TGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCA 121
           + +K +   +   D    ++VN  E EP    D  +M  EP ++I+G  I          
Sbjct: 144 SHVKLTPKDESKID---TVIVNGAECEPYLTSDYRMMLEEPESIIKGLTIILQLFDNAKG 200

Query: 122 FIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLES 181
            I +        + +   V +               +  I V      Y  G E  L+ +
Sbjct: 201 VIAIESNKPEAIKQMTELVKD---------------EPRITVCPLQTKYPQGGERTLIYA 245

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           + G+K    +    PA+ G       V+NV+++  +   + +                ++
Sbjct: 246 VTGRKINSTM---LPADAG-----CMVDNVDTVISIYNAVAKSIPLIR----------RI 287

Query: 242 FSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
            +++G  +  P      +  ++ EL+E   G           VI GG          M  
Sbjct: 288 ITVTGDAIANPQNYNVRIGTSYTELLEASGG----FQAEPAKVISGGP--------MMGQ 335

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
           A+ DY+    +     ++A+  + +  ++ +            +C +C  C +       
Sbjct: 336 ALFDYN----VPVTKTSSALTCLTK-DEVAEHA--------PSACIRCGRCVKVCP--GN 380

Query: 361 VMERLVKGIAQKREIDLLYEVS-----KNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           ++ +++   A++ +++   +++     +      IC     A  P+    K  R  +  
Sbjct: 381 IVPQMIMEAAERSDMERFIKLNGMECCECGCCAYICP----ARRPLTQAFKEMRKEVAA 435


>gi|290475318|ref|YP_003468206.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus
           bovienii SS-2004]
 gi|289174639|emb|CBJ81433.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus
           bovienii SS-2004]
          Length = 668

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 98/318 (30%), Gaps = 66/318 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +        L++NA E EP    D  +++   + +IEG  I    +   
Sbjct: 152 FPTASKL----QGSRHDLKTLIINAAECEPYITADDRLIQEHANEVIEGIRILMHLLNPE 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        ++L  A++                D  I+V      Y  G    L 
Sbjct: 208 RVLIGIEDNKPEAIDALNTALNG---------------DDSIVVRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          +++G+      + NV ++  +   +  G               
Sbjct: 253 KILTGKEV---PSGGRSSDIGV-----LMQNVGTVMAIKRAIIDGEPLI----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  V  P      +      L+++          +   VI GG  +        
Sbjct: 295 RIVTLTGEAVTAPGNFWARLGTPVQFLLQQAG----FKAKSEQMVIMGGPLMGFTLPDLN 350

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK-AIWRLSVFYKHESCGQCTPCREGTG- 356
                                V V+  S  I+  +I  +      E+C +C  C E    
Sbjct: 351 ---------------------VPVVKISNCILAPSIQEMEPKTVEEACIRCGLCVEACPA 389

Query: 357 -WMMRVMERLVKGIAQKR 373
             + + +    +G   K+
Sbjct: 390 GLLPQQLYWFSRGQEHKK 407


>gi|34556902|ref|NP_906717.1| formate dehydrogenase, BETA subunit (formatedehydrogenase [NADP+])
           [Wolinella succinogenes DSM 1740]
 gi|34482617|emb|CAE09617.1| FORMATE DEHYDROGENASE, BETA SUBUNIT (FORMATEDEHYDROGENASE [NADP+])
           [Wolinella succinogenes]
          Length = 649

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 2/115 (1%)

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK--HESCGQCTPCREGTGWMMRVMERLV 366
           + + + +G A V++ D + D+I      +  Y+   E+CG+C P + G   +  ++E++ 
Sbjct: 24  RAVRAFIGWAGVMIYDPTLDVIALAKEYARQYQCFAETCGRCAPGKFGGKILFDLLEKID 83

Query: 367 KGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHR 421
           +G  ++ +++ L EV K +   + C +G     PI  L++ +RPL  E +    R
Sbjct: 84  QGRGEESDLERLVEVGKLMMTTSKCEVGKTTPLPILDLLEAYRPLFVEALGNRSR 138


>gi|227529420|ref|ZP_03959469.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540]
 gi|227350663|gb|EEJ40954.1| conserved hypothetical protein [Lactobacillus vaginalis ATCC 49540]
          Length = 72

 Score = 86.2 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 123 IYVRGEFIRERESLQAAVDECYASGLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLES 181
           I++RGE+I    +L+ A+ E   +GLLG N    G+D ++ VH GAG YICGEETAL+ S
Sbjct: 1   IFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETALINS 60

Query: 182 LEGKKGQPRLKP 193
           LEG++  PR KP
Sbjct: 61  LEGRRANPRSKP 72


>gi|304558979|gb|ADM41643.1| Electron transport complex protein RnfC [Edwardsiella tarda FL6-60]
          Length = 773

 Score = 86.2 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 129/390 (33%), Gaps = 81/390 (20%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +          +I+ +  +G+ G GGAGF T  K +      +DR H L++NA E 
Sbjct: 126 DYRAL------TPPALIDHIHQAGIAGLGGAGFPTAAKLN----GGADRIHTLIINAAEC 175

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR     ++ GC I S  +      I +     +   +L+ A+       
Sbjct: 176 EPYITADDRLMREHAADIVTGCAILSHILSPERVLIGIEDNKPQAIAALRQALQGHEQ-- 233

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                        I +      Y  G    L++ L G +          A++G+      
Sbjct: 234 -------------IQLRVIPTKYPSGGAKQLIKILTGMEV---PHGQHSASIGV-----L 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELI 266
           + NV ++  +   +  G               ++ +++G  ++ P  V  ++      L+
Sbjct: 273 MQNVATVYAIKRAVIDGEPLI----------ERVVTLTGEQMHRPGNVWAAIGTPVKHLL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           +      +        VI GG  +                 L  +G  +      ++  S
Sbjct: 323 QNGGFIAQNKHP---MVIMGGPLMGF--------------TLSRLGVPVVKITNCILTPS 365

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKN 384
            D        S     + C +C  C +      + + +    +G    +  D  Y + + 
Sbjct: 366 RD------EFSAPQAEQPCIRCGACADVCPARLLPQQLYWYSQGKEHDKARD--YHLQEC 417

Query: 385 IEGRTICALGDAAAWPIQG---LIKNFRPL 411
           IE    C    A A+       L++ +R  
Sbjct: 418 IE----CG---ACAYVCPSNIPLVQYYRQE 440


>gi|170758741|ref|YP_001787798.1| putative electron transport protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405730|gb|ACA54141.1| putative electron transport protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 434

 Score = 86.2 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 76/236 (32%), Gaps = 46/236 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             Y++ N  E EP    +   +  EP T+I+G   A  A  A 
Sbjct: 97  FPTHIKLK-----ADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAP 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++G+     + L+  +                   DI V      Y  GEE A++
Sbjct: 152 KGYIAIKGKHENAIKILKDHLKGAS---------------DIEVKELQDIYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ GK  +P   P              V N E++  +   +                  
Sbjct: 197 HAILGKWLEPTQLP--------LEAKCVVINGETLTNITRAVEDRKPVID---------- 238

Query: 240 KLFSISGHVNYP----CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           K  +I G +         ++  +     +LIE+  G      +    V+ GG    
Sbjct: 239 KDITIIGKLKTGNKPNVLLDVPVGTPIHDLIEECGGIDGEFGE----VVIGGPYTG 290


>gi|24374054|ref|NP_718097.1| electron transport complex protein RnfC [Shewanella oneidensis
           MR-1]
 gi|24348529|gb|AAN55541.1|AE015693_3 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 790

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 100/313 (31%), Gaps = 50/313 (15%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F + +K + + +        +++N  E EP    D  +MR     ++ G  I    +   
Sbjct: 151 FPSHIKLNPVSE-----IELVIINGVECEPYISADDRLMREYSQEILAGIGIIHRLLAPK 205

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        +++Q AV +        S    G    + V      Y  G E  L+
Sbjct: 206 RIVIAIEDNKPEAIQAMQNAVSQ--------STLPTGS---VRVTVIPTKYPSGGEKQLI 254

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + + G++         PA +G+      V+NV +   +   + +G               
Sbjct: 255 QIITGREV---PSGAIPAKLGI-----VVHNVGTAFAIHQAVTQG----------KPLIE 296

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G +V  P      +    + ++             ++     G ++P +    +
Sbjct: 297 RVVTVTGQNVGKPGNYWLPIGTPVEHVLAHTEFNAAADQKVIIGGPMMGHALPTIQVPIL 356

Query: 299 RGA-IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES------------- 344
           +G   +     +E+G+     A I      +   A+      + H               
Sbjct: 357 KGTNCILVPSSQEIGTTPEEKACIRCGECANACPALLLPQQLFWHAKAEEYDKAASYNLK 416

Query: 345 -CGQCTPCREGTG 356
            C +C  C     
Sbjct: 417 DCIECGCCSYVCP 429


>gi|322832828|ref|YP_004212855.1| electron transport complex, RnfABCDGE type, C subunit [Rahnella sp.
           Y9602]
 gi|321168029|gb|ADW73728.1| electron transport complex, RnfABCDGE type, C subunit [Rahnella sp.
           Y9602]
          Length = 705

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 111/342 (32%), Gaps = 69/342 (20%)

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
              L++NA E EP    D  +M+     +++G  I    +      I +         +L
Sbjct: 169 TRTLILNAAECEPYITADDRLMQEHAMEILQGTRILCHMLHPERVLIGIEDNKPEAIAAL 228

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
           +AA+          +    G   ++ V      Y  G    L + L G +     K    
Sbjct: 229 KAAIS---------AEISDGVRFELRV--IPTKYPSGGAKQLTKILTGLEV---PKGHHS 274

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVE 255
           +++G+      + NV ++  +   +  G               ++ +++G  +  P  V 
Sbjct: 275 SSIGV-----LMQNVGTVFAIKRAIIDGEPLI----------ERVVTLTGEAMAKPGNVW 319

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSG 314
             +    + L+++   G      +   VI GG  +   LP+  +    +    L    S 
Sbjct: 320 ARLGTPIEHLMQE---GQLQPQGDKKMVIMGGPLMGFTLPSLNVPVVKISNCLLAPSDSE 376

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQK 372
           LG                          E+C +C+ C E      + + +    KG   +
Sbjct: 377 LG---------------------QPEPEEACIRCSLCAESCPAGLLPQQLYWFSKGEEHE 415

Query: 373 REIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
           +     + +   IE    C    A A+       L++ +R  
Sbjct: 416 K--ARKHNLFDCIE----CG---ACAYVCPSNIPLVQYYRQE 448


>gi|83591135|ref|YP_431144.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Moorella
           thermoacetica ATCC 39073]
 gi|1658402|gb|AAB18329.1| formate dehydrogenase beta subunit [Moorella thermoacetica]
 gi|83574049|gb|ABC20601.1| Respiratory-chain NADH dehydrogenase, 51 kDa subunit [Moorella
           thermoacetica ATCC 39073]
          Length = 707

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 4/110 (3%)

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKG 368
           +++ + +G   ++V D + D++ A+       + ESCG+C PCR GT  +  V+ R+  G
Sbjct: 34  RQLKAFIGWDGLVVTDPAVDLLAALQAYYQAVQGESCGRCVPCRVGTRVIYNVLVRIAGG 93

Query: 369 IAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF----RPLIEE 414
                ++DLL  V+  +   ++C LG A A  +   +  +    RP +E+
Sbjct: 94  EGLPSDLDLLRRVAWIVRDGSLCELGQAGAKAVLDFLDYYSEALRPFLED 143


>gi|295319804|gb|ADG00182.1| putative electron transport protein [Clostridium botulinum F str.
           230613]
 gi|322806749|emb|CBZ04318.1| electron transferring subunit of proline reductase [Clostridium
           botulinum H04402 065]
          Length = 372

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 72/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNMKVIEETPELIINGIKYAMKATNSK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +  +    L+ A+                   DI +      Y  GEE A++
Sbjct: 152 KGYIAIKSKHEKAVRVLEEALKNVS---------------DIEIKLLKDLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPIS--------AKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|226949832|ref|YP_002804923.1| putative electron transport protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841303|gb|ACO83969.1| putative electron transport protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 372

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 72/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNMKVIEETPELIINGIKYAMKATNSK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +  +    L+ A+                   DI +      Y  GEE A++
Sbjct: 152 KGYIAIKSKHEKAVRVLEEALKNVS---------------DIEIKLLKDLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPIS--------AKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|170754259|ref|YP_001782024.1| putative electron transport protein [Clostridium botulinum B1 str.
           Okra]
 gi|169119471|gb|ACA43307.1| putative electron transport protein [Clostridium botulinum B1 str.
           Okra]
          Length = 372

 Score = 86.2 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 72/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNMKVIEETPELIINGIKYAMKATNSK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +  +    L+ A+                   DI +      Y  GEE A++
Sbjct: 152 KGYIAIKSKHEKAVRVLEEALKNVS---------------DIEIKLLKDLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPIS--------AKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNIFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|300716526|ref|YP_003741329.1| Electron transport complex protein [Erwinia billingiae Eb661]
 gi|299062362|emb|CAX59479.1| Electron transport complex protein [Erwinia billingiae Eb661]
          Length = 707

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 111/359 (30%), Gaps = 78/359 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +  S     L++NA E EP    D  +M+     +IEG  I ++ + + 
Sbjct: 152 FPTATKLKGGLRGVS----TLIINAAECEPYITADDRLMQDCADEVIEGSRILAWVLQSD 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+ E                 DI +      Y  G    L 
Sbjct: 208 RVLIGIEDNKPEAIAALKKALGEAK---------------DIQIRVVPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G +           ++G+      + NV +   V   +  G               
Sbjct: 253 KILTGLEV---PHGGRSTDIGV-----LMQNVGTAFAVKRAIVNGEPLT----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  V  P  V   +      L+            +   V+ GG  +        
Sbjct: 295 RVVTLTGESVGKPGNVWGRLGTPISHLLHNAD----FSPASGQMVVMGGPLMGF------ 344

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR-LSVFYKHESCGQCTPCREGTG- 356
                           L T  V V+  +  I+      +      +SC +C+ C +    
Sbjct: 345 ---------------TLPTLDVPVVKITNCILAPAANEMGDNEAEQSCIRCSACADACPA 389

Query: 357 -WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             + + +    +G    +  +  + ++  IE    C    A A+       L++ +R  
Sbjct: 390 ALLPQQLYWYSRGKDHDKARE--HNIADCIE----CG---ACAYVCPSNIPLVQYYRQE 439


>gi|213418457|ref|ZP_03351523.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 267

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 22/176 (12%)

Query: 15  LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
           +        + R  W +        R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 110 IDADGEDRWIEREGWSDYR---AHSREALIERIHQYGVAGLGGAGFPTGVKL----QGGD 162

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +   
Sbjct: 163 DKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAIS 222

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
            L+A + + +               DI +      Y  G +     + +GK G PR
Sbjct: 223 MLRAVLADAH---------------DISLRVIPTKYPSGGDKTAHPNTDGKTGSPR 263


>gi|145219605|ref|YP_001130314.1| electron transport complex, RnfABCDGE type, C subunit
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205769|gb|ABP36812.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 441

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 122/371 (32%), Gaps = 76/371 (20%)

Query: 21  SDSMSRG------HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            D+ + G       W  + K      + II  +K +G+ G GGAGF + +K S  P    
Sbjct: 102 EDAWAEGLNTAPIDWKGLSK------ESIIERIKDAGIVGMGGAGFPSSVKLSPPPDKTI 155

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI-GAHCAFIYVRGEFIRER 133
           D    +++N  E EP    D  +M      +I+G  I +    G    FI +        
Sbjct: 156 D---TIILNGAECEPFLTADHRVMVEYAEEVIKGLEIITSLFQGKAKPFIGIEANKPDAI 212

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
            +++             +    G    I +      Y  G E  L+ ++ G+  +   + 
Sbjct: 213 AAMKK------------AAKGTG----IEIVTLETKYPQGAEKQLINAITGRTIE---EG 253

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPC 252
             P + G       V+N+ +   +          Y           ++ ++SG  ++   
Sbjct: 254 QLPFDKG-----CLVHNIGTAVAI----------YDAVSCNRPLVERVLTVSGMEISSAR 298

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            +   +   F + I    GGI    +    VI GG  +                   E+ 
Sbjct: 299 NIRAVIGTRFSD-IAAFSGGIS---EKTNQVITGGPMMG------------RSQFTLEVP 342

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQK 372
               T+ ++ ++ +              +  +C +C  C +     +       +   ++
Sbjct: 343 ITKTTSGILFINNAG---------LESSRERTCIRCGKCIDACPQGLEPWLLGNEAQFRR 393

Query: 373 REIDLLYEVSK 383
            +   LY ++ 
Sbjct: 394 LDEAELYGLAN 404


>gi|269139047|ref|YP_003295748.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|267984708|gb|ACY84537.1| electron transport complex protein [Edwardsiella tarda EIB202]
          Length = 767

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 129/390 (33%), Gaps = 81/390 (20%)

Query: 28  HWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +  +          +I+ +  +G+ G GGAGF T  K +      +DR H L++NA E 
Sbjct: 126 DYRAL------TPPALIDHIHQAGIAGLGGAGFPTAAKLN----GGADRIHTLIINAAEC 175

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           EP    D  +MR     ++ GC I S  +      I +     +   +L+ A+       
Sbjct: 176 EPYITADDRLMREHAADIVTGCAILSHILSPERVLIGIEDNKPQAIAALRQALQGHEQ-- 233

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
                        I +      Y  G    L++ L G +          A++G+      
Sbjct: 234 -------------IQLRVIPTKYPSGGAKQLIKILTGMEV---PHGQHSASIGV-----L 272

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELI 266
           + NV ++  +   +  G               ++ +++G  ++ P  V  ++      L+
Sbjct: 273 MQNVATVYAIKRAVIDGEPLI----------ERVVTLTGEQMHRPGNVWAAIGTPVKHLL 322

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
           +      +        VI GG  +                 L  +G  +      ++  S
Sbjct: 323 QNGGFIAQNKHP---MVIMGGPLMGF--------------TLSRLGVPVVKITNCILTPS 365

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKN 384
            D        S     + C +C  C +      + + +    +G    +  D  Y + + 
Sbjct: 366 RD------EFSAPQAEQPCIRCGACADVCPARLLPQQLYWYSQGKEHDKARD--YHLQEC 417

Query: 385 IEGRTICALGDAAAWPIQG---LIKNFRPL 411
           IE    C    A A+       L++ +R  
Sbjct: 418 IE----CG---ACAYVCPSNIPLVQYYRQE 440


>gi|308049948|ref|YP_003913514.1| electron transport complex, RnfABCDGE type, C subunit [Ferrimonas
           balearica DSM 9799]
 gi|307632138|gb|ADN76440.1| electron transport complex, RnfABCDGE type, C subunit [Ferrimonas
           balearica DSM 9799]
          Length = 895

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 82/256 (32%), Gaps = 39/256 (15%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             RD I+  ++ +G+ G GGA F   +K S           +L++N  E EP    D  +
Sbjct: 131 LERDAILGRIRDAGIAGLGGATFPAAIKLST-----DKPVQFLIINGAECEPYITSDDRL 185

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M+ E   ++ G  I    I      I +             A+     +        L  
Sbjct: 186 MQDEAEAILSGIDILDHLIQPERILIAIEDNKPEAI----TAIRNALMASHRDPQRYL-- 239

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
                +      Y  G E  L++ + G +     K   PA+ G+      ++NV +   +
Sbjct: 240 -----LRVIPTKYPSGSEKQLVQIVTGLEI---PKGQLPADKGI-----LMHNVGTCYAI 286

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +                  ++ +++G     P      +      L+E+     +  
Sbjct: 287 KRAVLDDEPLIQ----------RVVTVTGEQAGKPGNYWVRLGTDVQWLLEQ----TQSN 332

Query: 277 WDNLLAVIPGGSSVPC 292
                 +I GG  +  
Sbjct: 333 PLPGQPLIMGGPMMGF 348


>gi|78358306|ref|YP_389755.1| electron transfer protein (PduS) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220711|gb|ABB40060.1| electron transfer protein (PduS) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 442

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 109/338 (32%), Gaps = 70/338 (20%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             ++VN    EP    D  +++  P  +I G +      GA    I ++G+      +++
Sbjct: 33  DTVLVNGASCEPLLMSDPYLIQAHPDIVIRGLLAVMDCTGARRGIICLKGKHAAAMAAVR 92

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            AV          +    G    + V      Y  G+E  L+  + G +  P  +   P 
Sbjct: 93  GAV----------TREGSG---RLEVFELRDFYPAGDEHVLVHEVLG-RTVP--QGGIPL 136

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            +G       V+NVE++  V   +  GA              +  ++SG V     V+  
Sbjct: 137 QIG-----AVVSNVETLYNVALAME-GAPVTH----------RYVTVSGEVKRHMVVKVP 180

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
           +     +++    G     +     V+ GG  +  +     R                 T
Sbjct: 181 VGTLVSDVLTFAGGPAITEYK----VVDGGPMMGRVLPHTGRPVT------------KTT 224

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYK-----HESCGQCTPCRE-------GTGWMMRVMERL 365
           + ++V+     ++    ++    K        C QC+ C +       G       + R+
Sbjct: 225 SGLLVLPPDHTVV--ARKIMDPEKVRRITTSICCQCSHCTDLCPRNLLGHSLHPHRLMRV 282

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGD--AAAWPI 401
           ++G      +     +       + C L +  A    +
Sbjct: 283 LEGQMHAGTVAREALLC------SECGLCEKFACPMMV 314


>gi|219670891|ref|YP_002461326.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfitobacterium hafniense DCB-2]
 gi|219541151|gb|ACL22890.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfitobacterium hafniense DCB-2]
          Length = 442

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 118/342 (34%), Gaps = 59/342 (17%)

Query: 42  WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
            ++N VK +G+ G GGAGF T  K +   +       Y+++N  E EP    D+ +M   
Sbjct: 2   DLLNRVKDAGVIGAGGAGFPTHAKLAAKAE-------YILLNGAECEPLLRVDQQLMAEF 54

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
              +I+G   A   I A  A I ++G+     + L+  +            + LG +  +
Sbjct: 55  SEEIIKGLEAAGQYIEARKAVIGIKGKHKAIVKLLREKI------------TALGLEDYM 102

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V      Y  G+E  L+  L  K+  P  +   P  VG       V N E+   +   L
Sbjct: 103 EVMELRDIYPAGDEQVLVYELT-KRVVP--EASIPLKVG-----CVVINSETALNIFNAL 154

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
                                +++G +    TV+  + +   EL+ +        +    
Sbjct: 155 -----------SGKPVTETYLTLAGDIPNRLTVKVPVGMPIRELLRQCGLENGDDY---- 199

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVI GG  +  L        I  Y   K  G  L      ++ +                
Sbjct: 200 AVIDGGPMMGSL-----LDGIDGYVTKKSKGFILLKKDHFLIRKK----SVNINQGRVIS 250

Query: 342 HESCGQCTPCRE-------GTGWM-MRVMERLVKGIAQKREI 375
             +C QC  C +       G      +VM  L   +   +E+
Sbjct: 251 KTACEQCRMCTDLCPRYLLGHDMQPHKVMRALSYDLQDVKEL 292


>gi|167623859|ref|YP_001674153.1| electron transport complex protein RnfC [Shewanella halifaxensis
           HAW-EB4]
 gi|167353881|gb|ABZ76494.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           halifaxensis HAW-EB4]
          Length = 810

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 90/301 (29%), Gaps = 58/301 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K S      +     +++N  E EP    D  +MR     ++ G  I    +   
Sbjct: 151 FPTHIKLS-----PASDIELVIINGIECEPYITSDDRLMREHSDEILSGIAIIQKLLKPK 205

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        E++Q A++    +                +      Y  G E  L+
Sbjct: 206 RIIIAIEDNKPEAIEAMQHALNRSELATDSA-----------RITAVPTKYPSGGEKQLI 254

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G++         PA +G+      V NV +   +   +  G +  S          
Sbjct: 255 QILTGQEV---PSGSIPAQLGM-----LVQNVGTAYAIHDAVINGHALTS---------- 296

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G +   P      +      ++           D    VI GG  +        
Sbjct: 297 RVVTVTGLNSQTPGNYWMPVGTPIKHILNTLGFSGDLANDK---VIIGGPMMGY------ 347

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                    L  + + +      ++  S         ++     + C +C  C      +
Sbjct: 348 --------ALPNVQAPVLKGTNCILLPSN------EEIADDTVEKPCIRCGECAVACPAL 393

Query: 359 M 359
           +
Sbjct: 394 L 394


>gi|187778922|ref|ZP_02995395.1| hypothetical protein CLOSPO_02517 [Clostridium sporogenes ATCC
           15579]
 gi|187772547|gb|EDU36349.1| hypothetical protein CLOSPO_02517 [Clostridium sporogenes ATCC
           15579]
          Length = 434

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 46/236 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             Y++ N  E EP    +   +  EP T+I+G   A  A  A 
Sbjct: 97  FPTHIKLK-----ADIPDGYVIANCVECEPALHHNIAFIEKEPDTIIKGLRYAMKATNAP 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++G+  +  + L+  +                   DI V      Y  GEE A++
Sbjct: 152 KGYIAIKGKHEKAIKILKDHLKGAS---------------DIEVKELQDIYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ GK  +P   P              V N E++A +   +                  
Sbjct: 197 HAILGKWLEPTQLP--------LEAKCVVINGETLANITRAVEDRKPVID---------- 238

Query: 240 KLFSISGHVNYP----CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           K  +I G +          + ++     +LIE+  G      +    V+ GG    
Sbjct: 239 KDITIIGKLKTGNKPNVLFDVAVGTPIHDLIEECGGIDGEFGE----VVIGGPYTG 290


>gi|289422880|ref|ZP_06424711.1| respiratory-chain NADH dehydrogenase family protein
           [Peptostreptococcus anaerobius 653-L]
 gi|289156710|gb|EFD05344.1| respiratory-chain NADH dehydrogenase family protein
           [Peptostreptococcus anaerobius 653-L]
          Length = 437

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 44/251 (17%)

Query: 45  NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHT 104
             VK +G+ G GGAGF   +K             Y++ NA E EP    + + +  EP  
Sbjct: 82  ETVKNAGIVGLGGAGFPAHVKLGTDL----GGTGYVLCNAAECEPILSHNMNQLLLEPEK 137

Query: 105 LIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVH 164
           L+ G  +   A  A      ++    +E ++L+A +D                D  I + 
Sbjct: 138 LLRGMKLCMEATNAAHGVFALKEIHPKEIKALEAIID----------------DERIRIE 181

Query: 165 HGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
                Y  GEE A++    G +     + P  AN         V N E++  +   +   
Sbjct: 182 AMPNMYPMGEERAVVRECLGIELD-TDQLPSAANA-------VVINSETMCAIADAVDD- 232

Query: 225 ASWYSGFGRENNRGTKLFSISGHVNYPCTVE----ESMSITFDELIEKHCGGIRGGWDNL 280
                          K  +++G++N   ++E      +     +LI++  G     +   
Sbjct: 233 ---------LKPLIEKNITVAGYLNTANSLEIFMNVPIGTRVGDLIDRAGG--IFKYGEY 281

Query: 281 LAVIPGGSSVP 291
             +I GG    
Sbjct: 282 GEIIMGGPFTG 292


>gi|284049282|ref|YP_003399621.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Acidaminococcus fermentans DSM 20731]
 gi|283953503|gb|ADB48306.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Acidaminococcus fermentans DSM 20731]
          Length = 611

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +        F   +SCG+C PCR G G +  ++E+++   A    I L+ + +++I  
Sbjct: 35  CPVDMALNFLRFCHAQSCGKCVPCRVGLGQLEVLIEQVLDRTASLDTITLIEKTARSIAD 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            + CA+G  AA  +   ++ FR   EE +    RC
Sbjct: 95  SSDCAIGFEAASMVLKGVRGFREDYEEHVL-TGRC 128


>gi|89897743|ref|YP_521230.1| hypothetical protein DSY4997 [Desulfitobacterium hafniense Y51]
 gi|89337191|dbj|BAE86786.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 442

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 119/348 (34%), Gaps = 65/348 (18%)

Query: 42  WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
            ++N VK +G+ G GGAGF T  K +   +       Y+++N  E EP    D+ +M   
Sbjct: 2   DLLNRVKDAGVIGAGGAGFPTHAKLAAKAE-------YILLNGAECEPLLRVDQQLMAEF 54

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
              +I+G   A   I A  A I ++G+     + L+  +            + LG +  +
Sbjct: 55  SEEIIKGLEAAGQYIEARKAVIGIKGKHKAIVKLLREKI------------TALGLEDYM 102

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V      Y  G+E  L+  L  K+  P  +   P  VG       V N E+   +   L
Sbjct: 103 EVMELRDIYPAGDEQVLVYELT-KRVVP--EASIPLKVG-----CVVINSETALNIFNAL 154

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
                                +++G +    TV+  + +   EL+ +        +    
Sbjct: 155 -----------SGKPVTETYLTLAGDIPNRLTVKVPVGMPIRELLRQCGLENGDDY---- 199

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVI GG  +  L        I  Y   K  G  L      ++ +                
Sbjct: 200 AVIDGGPMMGSL-----LDGIDGYVTKKSKGFILLKKDHFLIRKK----SVNINQGRVIS 250

Query: 342 HESCGQCTPCRE-------GTGWM-MRVMERLVKGIAQKREIDLLYEV 381
             +C QC  C +       G      +VM  L        ++  L E+
Sbjct: 251 KTACEQCRMCTDLCPRYLLGHDMQPHKVMRAL------SYDLKDLKEL 292


>gi|310778339|ref|YP_003966672.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747662|gb|ADO82324.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 438

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 124/368 (33%), Gaps = 71/368 (19%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           W + +  + K     +  ++  G+ G GGA F T MK+        ++ H +++N  E E
Sbjct: 108 WYDTNLFVGKTSTKFVTFIREMGICGLGGAMFPTHMKFQA---DEYEKIHTVIINGAECE 164

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D  IM  +   ++         +  +   I V        E ++  +D+      
Sbjct: 165 PYLNSDNRIMVEKTSEIMIILNRLFDFMNINKVIIAVEDNKKEAIEKIRKFLDD------ 218

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                  G    I +      Y  G E  +++SL G +         P   G+      V
Sbjct: 219 ------SG---KIELAVLESVYPQGGEKQIIKSLMGIEVPVHK---IPMEYGM-----AV 261

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIE 267
            NV ++           + Y G  R      ++ ++SG  +  P  +   +     ++++
Sbjct: 262 INVGTLY----------ALYEGMYRGKPLIERVVTVSGLGIKEPKNILAKIGTPIKDILD 311

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                          VI GG  +        R    + + LK+     GT  ++ + +  
Sbjct: 312 YAG----IDRSKTYKVILGGPMMG-------RTIGDEKENLKK-----GTGGILALLKDE 355

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWM---MRVMERLVKGIAQKREIDLLYEVSKN 384
                       Y+ ++C  C  C +        +R +E   KG   +  ++  Y +S  
Sbjct: 356 C---------NEYETKACINCGACVDVCPMGLMPLRYVELARKGDYSR--MEKRYSLSSC 404

Query: 385 IEGRTICA 392
           I+    C 
Sbjct: 405 IK----CG 408


>gi|163749597|ref|ZP_02156844.1| polyhedral body protein [Shewanella benthica KT99]
 gi|161330707|gb|EDQ01644.1| polyhedral body protein [Shewanella benthica KT99]
          Length = 456

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 109/320 (34%), Gaps = 62/320 (19%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           D ++ +V+  G+ G GGAGF T +K          +   ++ N  E EP   KD+ +M+ 
Sbjct: 2   DPLLKQVQDGGVIGAGGAGFPTYVKLDC-------QVDLVLANGAECEPLLYKDQVLMQR 54

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
               L  G ++A   +GA    I ++ +       LQA +                    
Sbjct: 55  WADELFGGMLLAMKQVGASRGVIGIKKKNTDTIAILQATL-----------------PES 97

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           + +      Y  G+E  ++  + GK+         P  +G+      VNN+ES   +   
Sbjct: 98  LELFLMEDVYPAGDEVEMVYEVTGKRI---PSGGLPKEIGV-----MVNNIESFVNLFRA 149

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNL 280
                       +       + ++ G V  P T    + I++ + I+   G         
Sbjct: 150 S-----------KGIPVTETMVTVHGEVVRPYTAWLPVGISYQQAIDLAGGITCDD---- 194

Query: 281 LAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY 340
             V+ GG  +  +     +                 ++ ++V+ R + I +   R     
Sbjct: 195 FVVVEGGPMMGSVTEDLTQPVTKI------------SSGLLVIPRESRIARFKMRSEEDM 242

Query: 341 KH---ESCGQCTPCREGTGW 357
                 +C QC+ C      
Sbjct: 243 LRIGKSACDQCSLCTSMCPR 262


>gi|255526899|ref|ZP_05393795.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|255509405|gb|EET85749.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
          Length = 384

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 81/232 (34%), Gaps = 38/232 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             Y++ N  E EP    +  ++   P  +I G   A    GA 
Sbjct: 113 FPTHIKLK-----AQIPDGYIIANCVECEPVLRHNIKLIEENPGIVIRGIECAMKVTGAP 167

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++ +  +  +SL+ A+         G N       DI V      Y  GEE AL+
Sbjct: 168 KAYIGIKAKNKKAVQSLKNALK--------GRN-------DIEVSEVKNLYPMGEERALI 212

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            ++ GK  +P   P              V N E++  +   +                G 
Sbjct: 213 NAIFGKWLEPTQLP--------LEAKCVVINGETLVNITRAVEDRKPVIDKDIT--IAGK 262

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
                  HV      +  +     ELIEK CGGI+G +  L   + GG    
Sbjct: 263 LNSGKESHV----FFQIPVGTPIKELIEK-CGGIKGQYGEL---VVGGPYTG 306


>gi|221135174|ref|ZP_03561477.1| electron transport complex, RnfABCDGE type, C subunit [Glaciecola
           sp. HTCC2999]
          Length = 529

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 101/331 (30%), Gaps = 79/331 (23%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           L   +  I+  +  +G+ G GGAGF T +K              L++N  E EP    D 
Sbjct: 132 LSADKVSILERICQAGISGLGGAGFPTHIK-----TNPQKSVECLIINGIECEPYISSDD 186

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA-VDECYASGLLGSNSK 154
            IMR     + +G  I    I      I V        ++++ A +++            
Sbjct: 187 RIMREHAWQIKQGIDILRHVIQPKQVIIAVEDNKPEAMDAIKTACIEDAG---------- 236

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                 I +      Y  G E  L++ L G++     +   P +VG       + NV + 
Sbjct: 237 ------ITIASVPTKYPAGGERQLIQVLTGEEV---PQEGLPIDVG-----CLMYNVGTC 282

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGI 273
             +   +  G +             ++ +++G  +  P  V   +      L++    G 
Sbjct: 283 YAIADAVLHGKALVQ----------RVVTLTGQALGSPQNVWALLGTPIHHLLD--IAGY 330

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                    VI GG  +                               V +    ++K  
Sbjct: 331 DPKRQRSQKVIMGGPMM----------------------------GFTVHNDVVPVVKIT 362

Query: 334 WRLSVFYKHE--------SCGQCTPCREGTG 356
             L V  K E         C +C  C +   
Sbjct: 363 NCLLVPDKRELPNIEDERPCIRCGLCADACP 393


>gi|167948564|ref|ZP_02535638.1| electron transport complex, RnfABCDGE type, C subunit [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 285

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 56/161 (34%), Gaps = 18/161 (11%)

Query: 33  DKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTC 92
             I       +I  V+ SG+ G GGA F + +K +        +   LVVN  E EP   
Sbjct: 46  RDIGALSPQQLIQAVQESGMVGLGGAAFPSHVKLTI---PEGKQVDTLVVNGCECEPYLS 102

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  +M   P  L+ G   A  A G   A I +    +   E LQ               
Sbjct: 103 CDHRVMLEHPKALMRGIRYAMRATGTKQAVIGIEDNKMDAVEQLQT-------------- 148

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
                D  I V      Y  G E  L++S  G++      P
Sbjct: 149 -HTPRDDTIKVVAVETKYPQGSEKMLIKSALGREVPAGGLP 188


>gi|332981408|ref|YP_004462849.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Mahella
           australiensis 50-1 BON]
 gi|332699086|gb|AEE96027.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Mahella
           australiensis 50-1 BON]
          Length = 443

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 93/298 (31%), Gaps = 54/298 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +     ++VN  E EP    D+ +M  +   +++       +  A 
Sbjct: 23  FPTHVK-------INANADVVIVNGAECEPLIRVDQQLMAGKADEILQALQAVMISCHAS 75

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++ ++     +++  +                +   I +      Y  G+E  L+
Sbjct: 76  KAYIGLKPKYKEAIHAVEQLL---------------PHYDGIEISILRDVYPAGDEQILV 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G +  P    P    V        V NVE++  +   +          G       
Sbjct: 121 YDITG-RLVPEGGIPLMVGV-------VVVNVETLFNIYNAI---------HGLP--LTE 161

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  +I+G V  P TV   +  +  + I    G +         VI GG  +  L +    
Sbjct: 162 KFVTITGAVRDPITVRVPIGTSARDAISFAGGPLVEP----FVVIDGGPMMGKLISYSSA 217

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGW 357
                      + S      + ++ +    +     +       SC QC  C +    
Sbjct: 218 VVTKTTKSFIVLPSMHR---LAIIKQERPGLAVKRGM------ASCCQCQECTDLCPR 266


>gi|229523194|ref|ZP_04412601.1| electron transport complex protein RnfC [Vibrio cholerae TM
           11079-80]
 gi|229339557|gb|EEO04572.1| electron transport complex protein RnfC [Vibrio cholerae TM
           11079-80]
          Length = 880

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 102/322 (31%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  
Sbjct: 157 QLTPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDV 212

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR   H +I+G  I    +      I +                         +  +  
Sbjct: 213 LMRQYAHEIIQGIEIIEHILKPKLTIIGIEDNKPEAVA----------------ALQQAA 256

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
            D  I++      Y  G E  L++ L   +     K   PA++GL      V NV S+  
Sbjct: 257 QDKPIVIRVIPTKYPSGGEKQLIKILTNLEV---PKGGIPADIGL-----MVQNVGSLQA 308

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G     P  V   +      L+ +       
Sbjct: 309 IARAIVHGEPLIR----------RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGY---K 355

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
               L  +I GG  +                        L  A V +   +  I+     
Sbjct: 356 ADKKLPRLIMGGPMMGF---------------------TLPHAQVPITKTANCILAPTRN 394

Query: 336 LSVFYKHE-SCGQCTPCREGTG 356
                 +E +C +C  C E   
Sbjct: 395 ELTSSDNEMACIRCGQCAEACP 416


>gi|39995617|ref|NP_951568.1| Fe(III) reductase subunit beta [Geobacter sulfurreducens PCA]
 gi|39982380|gb|AAR33841.1| Fe(III) reductase, beta subunit [Geobacter sulfurreducens PCA]
 gi|298504639|gb|ADI83362.1| Fe(III) reductase, beta subunit [Geobacter sulfurreducens KN400]
          Length = 672

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 56/124 (45%), Gaps = 2/124 (1%)

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTGW 357
                  DG +++ + +G   +I+ D   D+           + +  CG+CTP ++GT  
Sbjct: 27  FRLPTTLDGERQIAAFMGWDGIILYDLKVDVPAMAAEYMKRVQTQYCCGKCTPGKKGTKV 86

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           +  V+  +++G A + ++D + +++  +     C L  ++  P+   +K+FR      I 
Sbjct: 87  LADVLAAIIEGRATEADLDTIDDLADLLT-NCKCTLCQSSTIPVLDAVKHFREDFLAYIT 145

Query: 418 QYHR 421
              +
Sbjct: 146 GIRK 149


>gi|300723257|ref|YP_003712557.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629774|emb|CBJ90382.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 708

 Score = 85.4 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 94/318 (29%), Gaps = 66/318 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K +          + L++NA E EP    D  +M+     ++EG  +    +   
Sbjct: 152 FPTATKLN----GGKHNLNTLIINAAECEPYITADDRLMQEHAQEVVEGIRVLIHLLNPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        ++L  A+                    IIV      Y  G    L 
Sbjct: 208 QVLIGIEDNKPEAIKALNKALKGNK---------------TIIVRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          +++G+      + NV ++  +   +  G               
Sbjct: 253 KILTGKEV---PSAGRSSDIGV-----LMQNVGTVVAIKRAIIDGEPLI----------E 294

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  V+ P      +      L+++              VI GG  +   LP   
Sbjct: 295 RIVTLTGDAVSSPGNFWARLGTPVQFLLQQVG----FKPKTEQMVIMGGPLMGFTLPDLN 350

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG- 356
           +    +    L      +    +                      E+C +C  C E    
Sbjct: 351 VPIVKISNCILAPSAQEMEPKEI---------------------EEACIRCGLCVEACPA 389

Query: 357 -WMMRVMERLVKGIAQKR 373
             + + +    +G   ++
Sbjct: 390 GLLPQQLYWFSRGQEHEK 407


>gi|254670960|emb|CBA07636.1| respiratory-chain NADH dehydrogenase, 51 kDa subunit [Neisseria
          meningitidis alpha153]
          Length = 96

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 16 QGKSLSDSMSRGHWDNVDKILEK--GRDWIINEVKASGLRGRGGAGFSTGMKWSFMP 70
             +L + + RG +  + KIL +   +  +I+EVK SGLRGRGGAGF TG+KWSFMP
Sbjct: 19 DCWTLDEYVKRGGYTALRKILSENISQTDVIDEVKTSGLRGRGGAGFPTGLKWSFMP 75


>gi|42527102|ref|NP_972200.1| putative glutamate synthase (NADPH) small subunit [Treponema
           denticola ATCC 35405]
 gi|41817526|gb|AAS12111.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Treponema denticola ATCC 35405]
          Length = 609

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G   +  ++  ++ G +  + +DL+ E +K+I  
Sbjct: 35  CPVYITRAFIEMCHAQTCGKCAPCRIGLLQLKHILTDVLNGKSTMKTLDLIEETAKSIRE 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
              CALG  AA  +   I   R   EE I ++ RC
Sbjct: 95  TADCALGYEAADMVYKSIIYCRDDFEEHI-KHGRC 128


>gi|325474149|gb|EGC77337.1| pyridine nucleotide-disulfide oxidoreductase [Treponema denticola
           F0402]
          Length = 609

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G   +  ++  ++ G +  + +DL+ E +K+I  
Sbjct: 35  CPVYITRAFIEMCHAQTCGKCAPCRIGLLQLKHILTDVLNGKSTMKTLDLIEETAKSIRE 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
              CALG  AA  +   I   R   EE I ++ RC
Sbjct: 95  TADCALGYEAADMVYKSIIYCRDDFEEHI-KHGRC 128


>gi|260655144|ref|ZP_05860632.1| Fe(III) reductase, beta subunit [Jonquetella anthropi E3_33 E1]
 gi|260630066|gb|EEX48260.1| Fe(III) reductase, beta subunit [Jonquetella anthropi E3_33 E1]
          Length = 635

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 1/103 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +         +            +SCG+CTPCR G   +  ++  ++ G  Q   +  + 
Sbjct: 52  IQASPPGLCPVDLAVSFLHICHSQSCGKCTPCRVGLNRLQDLINAVLSGKVQLDALQTIE 111

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            ++++I   + CA+G  AA  +   ++ FR   EE +  + RC
Sbjct: 112 TMAESIYLSSDCAIGQEAARMVLMGVRGFREDYEEHVV-HGRC 153


>gi|226324700|ref|ZP_03800218.1| hypothetical protein COPCOM_02486 [Coprococcus comes ATCC 27758]
 gi|225207148|gb|EEG89502.1| hypothetical protein COPCOM_02486 [Coprococcus comes ATCC 27758]
          Length = 441

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 106/339 (31%), Gaps = 66/339 (19%)

Query: 24  MSRGH------WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRP 77
           ++         +     + E  ++ I+N +  +G+ G GGAGF T +K S       D+ 
Sbjct: 99  IANDGQYEEVEYPQPKPLSELTKEEILNIIGEAGVVGMGGAGFPTRVKLS---PKEPDKI 155

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++ N  E EP    D   M   P  L+EG  +             +          L+
Sbjct: 156 DYIIANCAECEPYITADYRRMLENPELLVEGMRVILKLFDNAKGLFAIEDNKPDCIAKLK 215

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
                      L  +        + V      Y  G E  L+ +  G+     +    PA
Sbjct: 216 E----------LTKDEP-----RMEVREMMTKYPQGAERQLIFANTGRAINSTM---LPA 257

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
           + G       V+NVE+I  +   + +G           +    +      V  P   +  
Sbjct: 258 DAG-----CVVDNVETIISIYNAVVKGIP---------SMERVVTVTGDGVVNPGNYKVL 303

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGT 317
                +ELIE   G      +    VI GG  +    A       +              
Sbjct: 304 FGTNQNELIEAAGG----LKEGCEKVISGGPMMGF--AMYTTDTPITKTS---------- 347

Query: 318 AAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           ++++ M +  D + A        +  +C  C  C +   
Sbjct: 348 SSILCMSK--DEVSA-------CEPTACINCGRCVDACP 377


>gi|78224216|ref|YP_385963.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter metallireducens GS-15]
 gi|78195471|gb|ABB33238.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Geobacter metallireducens GS-15]
          Length = 672

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 54/128 (42%), Gaps = 2/128 (1%)

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH-ESCGQCTPCRE 353
                      DG + + + +G   +IV D+  D+           +    CG+CTP ++
Sbjct: 23  KDASFRLPTTLDGDRALAAFMGWDGIIVFDKGVDVPAMAAEYMKRVQTLYCCGKCTPGKK 82

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           GT  +M  +  +V+G   + ++D + ++   +     C L  ++  P+   +K+FR    
Sbjct: 83  GTRVLMDALAAIVEGRGTEAQLDTIADLGDLLA-NCKCTLCQSSTVPVIDAVKHFRDDFL 141

Query: 414 ERIDQYHR 421
             ++   +
Sbjct: 142 AYVNGAKK 149


>gi|251779641|ref|ZP_04822561.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083956|gb|EES49846.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 611

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 1/103 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +I        +          + ++CG+C PCR G   +  +++ ++   A    IDL+ 
Sbjct: 27  IIASPPGLCPVDMASSFLKLCQAQTCGKCVPCRIGLAQLENLIDDVLNRKATLETIDLIE 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +++K +     CA+G  AA  +   I  F+    E I   +RC
Sbjct: 87  KIAKVVIDSADCAIGYEAANMVLKGIVGFKSDYIEHIVN-NRC 128


>gi|90417026|ref|ZP_01224955.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2207]
 gi|90331373|gb|EAS46617.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2207]
          Length = 596

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 113/356 (31%), Gaps = 60/356 (16%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
               +I  +  +G+ G GGAGF + +K +   +   D    L+VNA E EP    D   +
Sbjct: 123 SPRKLIEMIGNAGISGMGGAGFPSAVKLNPGRQRPID---TLIVNATECEPYITADDSAI 179

Query: 99  RHEPHTLIEGCVIASFAI-GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           R     ++EG  I S  +   H   I +        E+L   V+              G 
Sbjct: 180 RERAGEIVEGIKILSAILDHPHHIMIGIEDNKPEAIEALAPHVE------------GTG- 226

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              I V      Y  G E  L+  L G++         PA+ G+        N+ +   +
Sbjct: 227 ---ISVVVFPTKYPSGGEKQLIYILTGREL---PAGKLPADEGM-----VCINIGTTYAI 275

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE-----KHCG 271
              +  G    S          ++ +++G  V  P   +  +      L+E     +  G
Sbjct: 276 KRAVIDGEPLIS----------RVTTVTGDAVGTPRNYDTLIGTPVRHLLEHNQFNEQAG 325

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
           G       ++      + VP +       A    +   +  +         M      + 
Sbjct: 326 GRVVMGGPMMGFTLPSADVPIVKTTNCILAPSYAEIPDDEPAQPCIR--CGMCAEACPVS 383

Query: 332 AIWRLSVFYKHES------------CGQCTPCREGTGWMMRVME--RLVKGIAQKR 373
            + +   +Y                C +C  C       + +++  R  KG  ++ 
Sbjct: 384 LLPQQLFWYAQAQEHDRLEAHNLFDCIECGACSYVCPSNIPLVQYYRAAKGEIRQA 439


>gi|114047405|ref|YP_737955.1| electron transport complex protein RnfC [Shewanella sp. MR-7]
 gi|113888847|gb|ABI42898.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           sp. MR-7]
          Length = 799

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 113/337 (33%), Gaps = 50/337 (14%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           +E     +I ++  +G+ G GGA F + +K + + +        +++N  E EP    D 
Sbjct: 126 IELSNHEMIAKIHGAGIAGMGGAAFPSHIKLNPVSE-----IELVIINGVECEPYISADD 180

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MR     ++ G  I    +      I +        +++Q AV +        S    
Sbjct: 181 RLMREYSQDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQ--------STLPA 232

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G      V      Y  G E  L++ + G++         PA +G+      V+NV +  
Sbjct: 233 GST---RVTAIPTKYPSGGEKQLIQIITGREV---PSGSIPAKLGI-----VVHNVGTAF 281

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIR 274
            +   + +G               ++ +++G +V  P      +    + +++       
Sbjct: 282 AIHQAVIQG----------KPLIERVVTVTGQNVGKPGNYWLPIGTPVEHVLKHTEFHAE 331

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGA-IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                ++     G ++P +    ++G   +     +E+G+     A I      +   A+
Sbjct: 332 ADQKVIIGGPMMGHALPTIQVPILKGTNCILVPSSQEIGTTPEEKACIRCGECANACPAL 391

Query: 334 WRLSVFYKHES--------------CGQCTPCREGTG 356
                 + H                C +C  C     
Sbjct: 392 LLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 428


>gi|296131592|ref|YP_003638839.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermincola sp. JR]
 gi|296030170|gb|ADG80938.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Thermincola potens JR]
          Length = 445

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 106/321 (33%), Gaps = 59/321 (18%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            +   I  V+ +G+ G GGAGF + +K        +    ++++N  E EP    D+ +M
Sbjct: 1   MKAETIKLVREAGVVGAGGAGFPSHVK-------IAAEAEFIIINGAECEPLLRVDQQLM 53

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
                 LI+G      A GA  AFI ++ ++    E L  A                   
Sbjct: 54  AARAEQLIKGIEAVMEATGASRAFIALKYKYKEAIEVLTEATAG---------------- 97

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             + V      +  G+E  L+  + G+      +   P  VG       V NVE+   + 
Sbjct: 98  KPVEVFTLGDFFPAGDEQVLVYEVTGRVV---PEGGIPLKVG-----CVVTNVETAINIA 149

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
             +  G      +           +++G V  P T++  +  +  E +            
Sbjct: 150 NAIE-GIPVTETY----------LTVTGEVEQPVTLKLPIGTSISEALALAG----VKDM 194

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII--KAIWRL 336
              AVI GG  +  +     +             + +    +++      I+     W  
Sbjct: 195 QNKAVIDGGPMMGPVVPDVSQPV-----------TKVTKGLIVLPADHKLIVSKSLPWET 243

Query: 337 SVFYKHESCGQCTPCREGTGW 357
            V      C QC+ C E    
Sbjct: 244 VVRRSRSVCIQCSMCTEVCPR 264


>gi|325662494|ref|ZP_08151097.1| hypothetical protein HMPREF0490_01837 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086276|ref|ZP_08335356.1| hypothetical protein HMPREF0987_01659 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471190|gb|EGC74415.1| hypothetical protein HMPREF0490_01837 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406042|gb|EGG85565.1| hypothetical protein HMPREF0987_01659 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 610

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G G +  ++  ++ G A  + +DL+ +++ +I  
Sbjct: 35  CPVDISRAFLELCHAQTCGKCVPCRIGLGQLKNLITDVLDGKATLKTLDLMEDLALSIMD 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQ-YHRCNFQ 425
              CA+G  AA  +   +  +R   EE I Q    C F 
Sbjct: 95  SADCAIGYEAAHMVYKGLIGYREDYEEHIRQGRCTCTFH 133


>gi|283785824|ref|YP_003365689.1| propanediol utilization: polyhedral bodies [Citrobacter rodentium
           ICC168]
 gi|282949278|emb|CBG88888.1| propanediol utilization: polyhedral bodies [Citrobacter rodentium
           ICC168]
          Length = 451

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          +    +VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 34  FPTHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMAQQAARLIRGVQYAMKATGAA 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++     +L   +                    I +H     Y  G+E   +
Sbjct: 87  EGIIALKEKYQPAIAALTPLLPPA-----------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 130 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++E   G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPQTVTVPIGMSLREVLEMAGGATIADP----GYINGGPMMGSLVTS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +IK      R  +      C QC  C +   
Sbjct: 226 ETPVSKT----------TGGLLVLPQSHPLIKRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|168180629|ref|ZP_02615293.1| putative electron transport protein [Clostridium botulinum NCTC
           2916]
 gi|182668399|gb|EDT80378.1| putative electron transport protein [Clostridium botulinum NCTC
           2916]
          Length = 436

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 39/237 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +    Y++ N  E EP    +  +  + P  +I+G   A  A  A 
Sbjct: 97  FPTHVKLK-----ANIPDGYVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++G+  +  E L+  +                   +I +      Y  GEE AL+
Sbjct: 152 KAYIGIKGKRKKAIEVLKEHLKNEE---------------NIQIKEVIDIYPSGEERALI 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+ G+  +P  + P  AN         V N E++A +   +               +  
Sbjct: 197 HSIFGEWLKP-TQIPIEAN-------CVVLNAETLANITRAVENRKPVIDKDITLMGKLK 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           K   I  HV     ++E +  +  ++IE  CGGI G +     +I GG     LP  
Sbjct: 249 K--GIGPHV----ILQEPIGKSMKDMIE-ICGGIDGEYGE---IIIGGPHTG-LPED 294


>gi|51244622|ref|YP_064506.1| electron transport complex protein [Desulfotalea psychrophila
           LSv54]
 gi|50875659|emb|CAG35499.1| probable electron transport complex protein [Desulfotalea
           psychrophila LSv54]
          Length = 438

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 112/346 (32%), Gaps = 65/346 (18%)

Query: 16  QGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD 75
                 + + +  W  ++         +++ V  +G+ G GGAGF + +K S       D
Sbjct: 104 HDVPAKEYIPQ-DWQQLE------VSELLSMVHDAGIVGIGGAGFPSHVKLSPPSSTPID 156

Query: 76  RPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERES 135
               LV+N  E EP    D   M      ++EG  I    +G     + +        + 
Sbjct: 157 ---TLVLNGAECEPYITADHRQMLEHARDVVEGARIICKILGVSRCSVGIESNKPDAIQV 213

Query: 136 LQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF 195
           ++  V     S L            I V      Y  G E  L++++ G+K         
Sbjct: 214 MEQEVQAVADSQL-----------TIEVCALQVKYPQGSEKQLIQAITGRKV---PAMSL 259

Query: 196 PANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTV 254
           P+ VG+      V+NV +   +   +      Y           K+ +++G  +  P  +
Sbjct: 260 PSAVGV-----VVHNVSTARAIYQAVALQKPLY----------EKVITVAGKCIERPANL 304

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG 314
           +  +     +++    G        L  +I GG  +    A       +           
Sbjct: 305 QVKLGTKISDIVNYLGG----LKPGLTRIIMGGPMMGF--AVSDLDIPITKT-------- 350

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
             T+A++ +    D +          +   C +C  C +     + 
Sbjct: 351 --TSALLFLAE--DEVDTN-------EPGPCIRCGWCLDACPMGLE 385


>gi|119897730|ref|YP_932943.1| electron transport complex protein RnfC [Azoarcus sp. BH72]
 gi|119670143|emb|CAL94056.1| putative electronen transport complex protein RnfC [Azoarcus sp.
           BH72]
          Length = 552

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 78/228 (34%), Gaps = 40/228 (17%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           GRD  +  ++  G+ G GGA F + +K              L++N  E EP    D  +M
Sbjct: 123 GRDATLAHLRDCGIVGLGGATFPSHVKLG-----RGKGVETLILNGAECEPWITCDDRLM 177

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     ++ G  +    IGA    + +         +++AA                   
Sbjct: 178 RERAADILAGATVLRELIGAQRLIVGIEDNKPEAIAAMRAAAGS---------------- 221

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            D  V      Y  G E  L+  L G      ++ P+    G +G      NV +   V 
Sbjct: 222 -DAEVVAVPALYPAGGEKQLIRVLTG------IEIPYGKLGGDFGVQC--FNVGTAHAVY 272

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
             +  G    S          ++ +++G V  P   E ++     +L+
Sbjct: 273 RAIAHGEPLVS----------RVVTLTGSVARPGNYEVAIGTPIQDLL 310


>gi|225027769|ref|ZP_03716961.1| hypothetical protein EUBHAL_02028 [Eubacterium hallii DSM 3353]
 gi|224954915|gb|EEG36124.1| hypothetical protein EUBHAL_02028 [Eubacterium hallii DSM 3353]
          Length = 617

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 42/101 (41%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +I        +         +  ++CG+C PCR G G +  ++E ++ G A    + L+ 
Sbjct: 31  IIASPPGLCPVDMTASFLKLFHAQTCGKCVPCRIGLGVLEDMLEDVLDGKATLETLSLIE 90

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             +K I     CA+G  A   +   ++ FR    E I   H
Sbjct: 91  RTAKAIYDSADCAIGYEAGRMVLKGLEGFREDFIEHITNGH 131


>gi|113970403|ref|YP_734196.1| electron transport complex protein RnfC [Shewanella sp. MR-4]
 gi|113885087|gb|ABI39139.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           sp. MR-4]
          Length = 809

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 113/337 (33%), Gaps = 50/337 (14%)

Query: 36  LEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDR 95
           +E     +I ++  +G+ G GGA F + +K + + +        +++N  E EP    D 
Sbjct: 126 IELSNHEMIAKIHGAGIAGMGGAAFPSHIKLNPVSE-----IELVIINGVECEPYISADD 180

Query: 96  DIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
            +MR     ++ G  I    +      I +        +++Q AV +        S    
Sbjct: 181 RLMREYSQDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQ--------STLPA 232

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
           G      V      Y  G E  L++ + G++         PA +G+      V+NV +  
Sbjct: 233 GST---RVTAIPTKYPSGGEKQLIQIITGREV---PSGSIPAKLGI-----VVHNVGTAF 281

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIR 274
            +   + +G               ++ +++G ++  P      +    + +++       
Sbjct: 282 AIHQAVTQG----------KPLIERVVTVTGQNIGKPGNYWLPIGTPVEHVLKHTEFNAE 331

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGA-IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                ++     G ++P +    ++G   +     +E+G+     A I      +   A+
Sbjct: 332 ADQKVIIGGPMMGHALPTIQVPILKGTNCILVPSSQEIGTTPEEKACIRCGECANACPAL 391

Query: 334 WRLSVFYKHES--------------CGQCTPCREGTG 356
                 + H                C +C  C     
Sbjct: 392 LLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 428


>gi|331092596|ref|ZP_08341415.1| hypothetical protein HMPREF9477_02058 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400607|gb|EGG80221.1| hypothetical protein HMPREF9477_02058 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 610

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G   +  ++  ++ G A    +DL+ + + +I  
Sbjct: 35  CPVDMARAFLELCHAQTCGKCVPCRVGLWQLKNLLTDVLNGNATLDTLDLMEDSALSIMQ 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            + CA+G  AA  +   +  +R   EE I +  RC 
Sbjct: 95  SSDCAIGYEAAHMVYKALVGYREDFEEHIRE-GRCT 129


>gi|329298912|ref|ZP_08256248.1| electron transport complex, RnfABCDGE type subunit C [Plautia stali
           symbiont]
          Length = 648

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 64/322 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
             GRD ++  +  +G+ G GGAGF T  K     +  +     L++NA E EP    D  
Sbjct: 129 ALGRDAVVKRIHDAGIAGLGGAGFPTATKLRGGLRGVN----TLIINAAECEPYITADDR 184

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     ++EGC I ++ + A    I +         +L+ A+                
Sbjct: 185 LMQDCAAEVLEGCRILAWVLQAERVLIGIEDNKPEAIAALKQALAGDRE----------- 233

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + +      Y  G    L + L G++           ++G+      + NV +   
Sbjct: 234 ----LQLRVIPTKYPSGGAKQLTKILSGREV---PHGGRSTDIGV-----LMQNVGTAWA 281

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           V   +  G               ++ +++G  +  P  V   +      L+++       
Sbjct: 282 VKRAIVDG----------EPITERVMTLTGEAIARPRNVWGRLGTPVSHLLQQVG----F 327

Query: 276 GWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                  VI GG  +   LP+  +    +    L    S +G                  
Sbjct: 328 TPGARQMVIMGGPLMGFTLPSLNVPVVKITNCILAPSASEMG------------------ 369

Query: 335 RLSVFYKHESCGQCTPCREGTG 356
                 + +SC +C+ C +   
Sbjct: 370 ---QPQEEQSCIRCSACADVCP 388


>gi|56460896|ref|YP_156177.1| electron transport complex protein RnfC [Idiomarina loihiensis
           L2TR]
 gi|56179906|gb|AAV82628.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Idiomarina
           loihiensis L2TR]
          Length = 556

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 72/234 (30%), Gaps = 43/234 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K             +L++N  E EP    D  +M+     +I G  I  +     
Sbjct: 156 FPTAQKL-----AQQKPLRHLIINGVECEPYIAADDRLMQEHADDIIAGIRILQYITRCD 210

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              + +        +++  A+D+               +  I +      Y  G E  L+
Sbjct: 211 SVLLAIEDNKPEAIKAMAEAIDD---------------NPQIQLKVVPTKYPSGGEKQLI 255

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           E L G +         P ++GL      + NV +   V   +  G               
Sbjct: 256 ELLTGHQV---PSGKLPMDIGL-----LMQNVGTAYAVKRAIIHGEPLL----------E 297

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
           ++ +++G  +     V   +      L+++         +    +I GG  +  
Sbjct: 298 RVVTLTGESLQQRGNVWALLGTPIQHLLDESG----FTPEKKQRIIMGGPMMGF 347


>gi|170759169|ref|YP_001787796.1| putative electron transport protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406158|gb|ACA54569.1| putative electron transport protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 372

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNMKVIEETPELIINGIKYAMKATNSE 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +  +    L+ A+                   +I +      Y  GEE A++
Sbjct: 152 KGYIAIKAKHEKAVRVLEEALKNIS---------------NIELKLLKDLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPI--------AAKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNVFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|326202709|ref|ZP_08192577.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           [Clostridium papyrosolvens DSM 2782]
 gi|325987293|gb|EGD48121.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           [Clostridium papyrosolvens DSM 2782]
          Length = 414

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 315 LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
           +G   + + D+S  +I    +  +  + +SCG+CT CREG   +   +  + KG  +   
Sbjct: 222 MGDGVITIYDKSCCMIAQAEKALLESRKKSCGKCTFCREGLNQLFVRINEITKGKGESNG 281

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           + ++ ++ + ++  TIC++G   +      I  F    E  I +  +C 
Sbjct: 282 LRIMEDIGEAMKFSTICSIGQYGSAFTLDTIHLFSNEYENHIKK-KKCT 329


>gi|149912038|ref|ZP_01900631.1| electron transport complex protein RnfC [Moritella sp. PE36]
 gi|149804899|gb|EDM64934.1| electron transport complex protein RnfC [Moritella sp. PE36]
          Length = 931

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 95/298 (31%), Gaps = 60/298 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +           +L++NA E EP    D  +MR     +I+G  I    I   
Sbjct: 153 FPTAVKLN-----DRQPIEFLLINAAECEPYITSDDVLMRERADDIIQGIEILRHMIKPA 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        ++L+ A+++   S             DIIV      Y  G E  L+
Sbjct: 208 LCVIGIEDNKPDAAQALETAINKINLSN------------DIIVRKVPTKYPNGGEKQLI 255

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+     K   PA  G+      + NV ++  V   +       S          
Sbjct: 256 QMLTGKEI---SKGQIPAQSGI-----VMQNVGTVYAVKQAIIDRQPLLS---------- 297

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G     P  V+  +      L+ +             A+I GG  +        
Sbjct: 298 RIVTLTGKAFPQPRNVQALIGTPISALLSEF----HCDETKAAAIIYGGPMMGF------ 347

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                    L + G       +  +      ++           ++C +C  C E   
Sbjct: 348 -TLPHTQFSLTKTG----NCILTPVKDEIPQVREA---------DACIRCGECSEVCP 391


>gi|223984137|ref|ZP_03634289.1| hypothetical protein HOLDEFILI_01581 [Holdemania filiformis DSM
           12042]
 gi|223963931|gb|EEF68291.1| hypothetical protein HOLDEFILI_01581 [Holdemania filiformis DSM
           12042]
          Length = 446

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 108/345 (31%), Gaps = 71/345 (20%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            ++ +++ +  +G+ G GGAGF + +K+             L++NA E EP    D    
Sbjct: 135 TQEELVSFMMNAGIVGCGGAGFPSYVKYRGCK-----GIDLLIINAVECEPYITADYKNT 189

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
                 L+ G        GA  A I               A+       +          
Sbjct: 190 SLNMQDLVTGVAAMLKMSGAKEAAI---------------AIKTTKKDFIPTVVEAFKDY 234

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            +I V      Y  G E  L+  +  K+ +       P  VG+      VNN  +     
Sbjct: 235 SNINVKEVPDVYPMGWERTLVYEITKKRYE-----KLPGEVGV-----IVNNATTAIAFG 284

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             L +G               K  ++SG  +N P  V   + +   ++I    G      
Sbjct: 285 QALSKGMPITH----------KYVTVSGDGINTPANVLVPVGVKAADVIAACGG---YSG 331

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
           +++L +  G      +   Q                   + A+ V+              
Sbjct: 332 EDVLLIAGGPMMGKTITTDQFVITPY-------------SNALTVLKN------------ 366

Query: 338 VFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
                 +C +C  C +     ++ + R+ +     + + +L ++S
Sbjct: 367 KPVNQVACLRCGRCSDHCPAGLQPV-RINQAEKS-KNVAMLEKLS 409


>gi|127512996|ref|YP_001094193.1| electron transport complex protein RnfC [Shewanella loihica PV-4]
 gi|126638291|gb|ABO23934.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           loihica PV-4]
          Length = 870

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 117/362 (32%), Gaps = 63/362 (17%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           ++++ E   D II  ++++G+ G GGA F T +K   + +        L++N  E EP  
Sbjct: 128 LEQVAEMDNDDIIRRIQSAGIAGLGGAAFPTHIKLKPVSE-----IELLIINGVECEPYI 182

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D  +M+     ++ G  I    +      + +        E +  A++          
Sbjct: 183 TSDDKLMQESCDEIVRGIEIVHQLLSPKRIIVAIEDNKPEAVEQMGHALNRSQLPSHCA- 241

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNV 211
                      V      Y  G E  L++ L G++         PAN+G+      V NV
Sbjct: 242 ----------RVSKIPTLYPSGGEKQLIQILTGQEV---PSGAIPANLGI-----LVQNV 283

Query: 212 ESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHC 270
            +   +   + R                ++ +++G ++  P      +    + L+E   
Sbjct: 284 GTAYSIAQAVYRNMPLI----------ERVVTLTGQNIAKPGNYWVPIGTPVEHLLE--- 330

Query: 271 GGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
              +   D    VI GG  +  +                      GT  V++        
Sbjct: 331 -VGQFRGDANAPVIIGGPMMGYMLPNV------------AAPITKGTNCVLMPSEQE--- 374

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTI 390
                ++     + C +C  C +     +   +      AQ+ +    Y +   IE    
Sbjct: 375 -----VAPPSPEQPCIRCGECAQACPAQLLPQQLFWHAKAQEYDKAASYNLRDCIE---- 425

Query: 391 CA 392
           C 
Sbjct: 426 CG 427


>gi|218708972|ref|YP_002416593.1| hypothetical protein VS_0976 [Vibrio splendidus LGP32]
 gi|218321991|emb|CAV18003.1| putative membrane protein [Vibrio splendidus LGP32]
          Length = 276

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 23/174 (13%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
              ++   L   + +   + V+    K  D +++ ++ +G+ G GGAGF T  K     +
Sbjct: 120 CVVIKPDGLDAWIEK---NPVEDFSTKTSDELLDVIRQAGISGMGGAGFPTAKKL----Q 172

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
               R   L+VNA E EP    D  +++     +++G  +    +      I +      
Sbjct: 173 SGLGRTDILIVNAAECEPYITSDDKLLQEHADEVLKGIEVVEHILQPKLTVIGIEDNKPD 232

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGK 185
             ++L+ A                  D DI++      Y  G E  L++ L  K
Sbjct: 233 AIKALEIA----------------AKDKDIVIRVIPTKYPSGGEKQLIKILTNK 270


>gi|312878780|ref|ZP_07738580.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Aminomonas paucivorans DSM 12260]
 gi|310782071|gb|EFQ22469.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Aminomonas paucivorans DSM 12260]
          Length = 446

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 92/331 (27%), Gaps = 66/331 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K             YL+ N  E EP    D+ +M  E   L+      + A+GA 
Sbjct: 23  FPTHVKL-----AAEGIDTYLI-NGAECEPLLTVDQHLMEAEAPRLVRAAASVAEALGAT 76

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A   ++ ++       +  +D   A+G               V      Y  G+E  L+
Sbjct: 77  RAVFGLKKKY-------RRQIDALRAAGG-------------EVAEVGNTYPAGDEVILI 116

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + + G +  P    P             VNN E++  V   L                  
Sbjct: 117 QEVLG-RTVPEGGLPLLVGA-------VVNNPETLLNVAEALE-----------GRPVTH 157

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
              ++ G V         +     EL+    G          A I GG            
Sbjct: 158 TYVTLGGAVASRGVWRVPVGTDGAELLAAAGGVTEDDP----AYIEGGPMTGKYRFDPHF 213

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM- 358
                  GL        T+A++  +     ++ +          +C QC  C        
Sbjct: 214 PVTKATKGLL---VVPRTSALVRYETLD--VERMLN----QARVACCQCVQCTLACSRNL 264

Query: 359 -------MRVMERLVKGIAQKREIDLLYEVS 382
                   R+M  L  G     E+     + 
Sbjct: 265 VGYDLEPHRIMRLLAYGPMGLPEVAKQAFLC 295


>gi|119505633|ref|ZP_01627704.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2080]
 gi|119458576|gb|EAW39680.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2080]
          Length = 513

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 106/346 (30%), Gaps = 55/346 (15%)

Query: 29  WDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
           +   +    +  D +I+ ++A+G+ G GGAGF T +K     ++       L++N  E E
Sbjct: 113 YAGCEDWRVETPDTLISCIRAAGVAGMGGAGFPTAVKLMARDRLP---LQTLIINGTECE 169

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P    D  +M+ +   ++EG  I +  +G     + V        +++Q A     A G 
Sbjct: 170 PYITADDTLMQVDAAGIVEGAQILAHILGVEEILLAVEDNKPAALDAMQKA---AKARGG 226

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                      D  V      Y  G E  L+E L GK+         PA++G+       
Sbjct: 227 -----------DCNVMTFPTKYPSGGEKQLIEILTGKQV---PTGGLPADLGI-----VC 267

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
            N  +       +  G               ++ +++G  +  P      +    + L+ 
Sbjct: 268 QNPGTAVAARDAVCFGKPLTD----------RIVTLTGRALARPGNYRARLGTPIEHLLT 317

Query: 268 KHCGGIRGGWDNLLAVIPGG-----SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
                       +      G     S+VP +          + +      +         
Sbjct: 318 VAGFDPSQNQRLIHGGPMMGFALESSAVPIIKTTNCILVPTEQELPTPPDAQACIR--CG 375

Query: 323 MDRSTDIIKAIWRLSVFYKHES------------CGQCTPCREGTG 356
           +         + +   +Y                C +C  C     
Sbjct: 376 LCAEACPASLLPQQLYWYARAKDQEQLERHHLADCIECGACSWVCP 421


>gi|257440402|ref|ZP_05616157.1| electron transport complex, RnfABCDGE type, C subunit
           [Faecalibacterium prausnitzii A2-165]
 gi|257197151|gb|EEU95435.1| electron transport complex, RnfABCDGE type, C subunit
           [Faecalibacterium prausnitzii A2-165]
          Length = 455

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 101/338 (29%), Gaps = 65/338 (19%)

Query: 24  MSRGHWDNVDKILE----KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           +       VD  ++      +   +  V+  GL G GGAGF T +K              
Sbjct: 115 IKTDGKQTVDPAVKAPEVTDKASFLAAVRECGLVGLGGAGFPTDVKLQ-----PKQTVDT 169

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L++NA E E     D   M +    ++ G        G     I +        E L   
Sbjct: 170 LLINASECEVWLTSDTQEMLNCSDDIVRGIEAVLKYTGIPKCIIGIENNKPECIELLTQ- 228

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
                         K      I V      Y  G E  L+E   G++         PA+ 
Sbjct: 229 --------------KTKDKPAIEVKALPSVYGTGAELILIEKCLGREV---PHGGLPADA 271

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESM 258
           G       V NV S++ +   L  G    S          +  ++ G     P  +   +
Sbjct: 272 G-----AIVMNVTSVSTLGKYLATGMPVVS----------RCITVDGDACAKPQNLIVPV 316

Query: 259 SITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTA 318
              +++++     GI+GG +    V  G    P +    +             G  + +A
Sbjct: 317 GTAYEDVLN--AAGIKGGVELGKVVAGGAMMGPAV--ENLSYPTTKTTS----GLIMLSA 368

Query: 319 AVIVMDRSTDIIKAIWRLSVFYKHESCGQCT-PCREGT 355
           A     +    I+             CG+C   C  G 
Sbjct: 369 AAAEPPQVNPCIR-------------CGRCVEYCPMGL 393


>gi|309388568|gb|ADO76448.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Halanaerobium praevalens DSM 2228]
          Length = 445

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 118/328 (35%), Gaps = 59/328 (17%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K+    +       YL++N  E EP    D+ +MR     ++E  V+ +  IGA 
Sbjct: 20  FPTHVKYDCEAE-------YLIINGAECEPLLQTDKFLMREFAAEILEAIVMVAENIGAQ 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
                 + ++ +E   L+  + E         N K     +I +      Y  G+E  L+
Sbjct: 73  KIVFATKKKYTKEIACLEKIIAE--------KNYK-----NIELFLMDSYYPAGDEQILV 119

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             +  ++  P    P    V +    T  N+  ++  +P                     
Sbjct: 120 YEVT-ERIVPEGGIPLQVGVVVTNVGTLYNSYRAVKDLPVTD------------------ 160

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K  S+ G VN P  ++  +  +  + I    G     +    AVI GG          M 
Sbjct: 161 KYVSVLGEVNDPRIIQVPLGTSVKDCIAAAGGSTINDY----AVIVGGP---------MM 207

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY---KHESCGQCTPCREGTG 356
           G  +    + +        A+IV+ R+  +I+   +           +C QC+ C E   
Sbjct: 208 GTNLVGSEIDQAVITKTDGAIIVVPRNNFVIERNKQSIEHIKNKAKAACIQCSLCTEYCP 267

Query: 357 WMMRVME----RLVKGIAQKREIDLLYE 380
             +   E    R+++ ++   + ++L E
Sbjct: 268 RYLIGHELEPHRIMRALSYNEDAEVLKE 295


>gi|330830241|ref|YP_004393193.1| RnfABCDGE type electron transport complex subunit C [Aeromonas
           veronii B565]
 gi|328805377|gb|AEB50576.1| Electron transport complex, RnfABCDGE type, C subunit [Aeromonas
           veronii B565]
          Length = 903

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 86/274 (31%), Gaps = 43/274 (15%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             R  ++  ++ +G+ G GGA F T  K              L+VN  E EP    D  +
Sbjct: 131 LERGELLERIQQAGVAGLGGAVFPTHSKL----DGRGQLTEILIVNGLECEPYITTDDRL 186

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M+     +++G  +    +      I V             A+++               
Sbjct: 187 MQQYADEIMDGIRVLKHLLKPKLTLIGVEDNKPE-------AIEQLTRHA---------T 230

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D D++V      Y  G     +E L G++     K     ++G+      V NV ++  +
Sbjct: 231 DEDVLVKTVPTKYPSGGAKQTIELLTGRQV---PKGGRAVDIGI-----MVLNVATVFAI 282

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +  G               ++ +++G     P      +      L+++        
Sbjct: 283 KRAIIDGEPLI----------ERIVTLTGESFKQPGNAWVRLGTPVRWLLQRF----ELQ 328

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKE 310
            +    VI GG  +       M   +   + L  
Sbjct: 329 PEAEQRVIMGGPMMGFTLPHAMVPVVKATNCLLA 362


>gi|254481381|ref|ZP_05094626.1| electron transport complex, RnfABCDGE type, C subunit subfamily,
           putative [marine gamma proteobacterium HTCC2148]
 gi|214038544|gb|EEB79206.1| electron transport complex, RnfABCDGE type, C subunit subfamily,
           putative [marine gamma proteobacterium HTCC2148]
          Length = 677

 Score = 83.9 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 113/353 (32%), Gaps = 69/353 (19%)

Query: 21  SDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYL 80
            + +      +   +    R  ++  ++ +G+ G GGAGF T +K S            L
Sbjct: 108 DEWIDHSGLADYKSV---DRSELLTIIRNAGIAGMGGAGFPTAVKLSV---KAEVGIETL 161

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           ++N  E EP    D  +MR     +IEG  I +  +      I V         +LQ A 
Sbjct: 162 ILNGTECEPYITADDILMRERAEQIIEGAQIIAHLVQPDEILIGVEDNKPEGIAALQTAA 221

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
           +              G  V+I+V      Y  G E  L+E L GK+         P+ VG
Sbjct: 222 E--------------GTGVEIVVF--PTKYPSGGEKQLIEILTGKQV---PSGGLPSAVG 262

Query: 201 LYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
           +        N+ S   V   +  G    S        G         VN P   E  +  
Sbjct: 263 V-----VCQNIGSAVAVRDAVIDGRPLISRITTVTGEG---------VNDPRNYEVLLGS 308

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
           +   L+E+         +    +I GG  +                              
Sbjct: 309 SLAYLLEQAD----YQTNKNKRLIMGGPMMGFTVPDAH---------------------- 342

Query: 321 IVMDRSTDIIKAIWRLSVFYKH--ESCGQCTPCREGTG--WMMRVMERLVKGI 369
           + + ++T+ + A     +      ++C +C  C E      + + +    +G 
Sbjct: 343 VPIVKTTNCVLAPAETELPAPPPAQACIRCGMCAEACPASLLPQQLFWFSQGK 395


>gi|187778924|ref|ZP_02995397.1| hypothetical protein CLOSPO_02519 [Clostridium sporogenes ATCC
           15579]
 gi|187772549|gb|EDU36351.1| hypothetical protein CLOSPO_02519 [Clostridium sporogenes ATCC
           15579]
          Length = 362

 Score = 83.5 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 87  FPTHIKLKADNKD-----GYIIANCVECEPALHHNMKVIEETPELIINGIKYAMKATNSK 141

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +  +    L+ A+                   +I +      Y  GEE A++
Sbjct: 142 KGYIAIKAKHEKAVRVLEEALKNIS---------------NIELKLLKDLYPMGEERAII 186

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 187 NAIFDKWLDVTELPI--------AAKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 238

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 239 SG-----------NKPNVFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 280


>gi|308186746|ref|YP_003930877.1| Electron transport complex protein rnfC [Pantoea vagans C9-1]
 gi|308057256|gb|ADO09428.1| Electron transport complex protein rnfC [Pantoea vagans C9-1]
          Length = 869

 Score = 83.5 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 106/355 (29%), Gaps = 80/355 (22%)

Query: 8   IFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           IF    G         L D                 R  I+  +  +G+ G GGAGF T 
Sbjct: 108 IFLTPDGEDRWMPLDPLPDYRQH------------PRADIVQRIHDAGIAGLGGAGFPTA 155

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            K     +        L++NA E EP    D  +M+     ++EG  I ++ + A    I
Sbjct: 156 TKLKGGLRG----VKTLIINAAECEPYITADDRLMQDYAAEVLEGSRILAWVLQAERVLI 211

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
            +         +L+ A+               G + D+ +      Y  G    L   L 
Sbjct: 212 GIEDNKPEAIAALKQAL---------------GSERDLQIRVIPTKYPSGGAKQLTRILT 256

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G +           ++G+      + NV +   V   +  G               ++ +
Sbjct: 257 GMEV---PHGGRSTDIGV-----LMQNVGTAWAVKRAIING----------EPITERVVT 298

Query: 244 ISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGA 301
           ++G  +  P  V   +      L+                VI GG  +   LP+  +   
Sbjct: 299 LTGEAIAQPRNVWSRLGTPISHLLHLVG----FTPAPRQMVIMGGPLMGFTLPSLDVPVV 354

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    L    S +G                        + +SC +C+ C +   
Sbjct: 355 KITNCILAPSASEMGNND---------------------EEQSCIRCSACADACP 388


>gi|238756490|ref|ZP_04617795.1| Electron transport complex protein rnfC [Yersinia ruckeri ATCC
           29473]
 gi|238705277|gb|EEP97689.1| Electron transport complex protein rnfC [Yersinia ruckeri ATCC
           29473]
          Length = 552

 Score = 83.5 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 111/341 (32%), Gaps = 66/341 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           ++    ++ ++  +G+ G GGAGF T  K     +        L++NA E EP    D  
Sbjct: 105 QQQPAELLEQIHQAGIAGLGGAGFPTASKLQSGLQS----VKTLIINAAECEPYITADDR 160

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +M+     +I G  I S+ +      I +         +L+ A+                
Sbjct: 161 LMQDHADEVISGIHILSYLLHPEQVIIGIEDNKPAAIAALKQALIG-------------- 206

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               I++      Y  G    L + L G++          +++G+      + NV ++  
Sbjct: 207 -HPSILLRVIPTKYPSGGAKQLTKILTGQEV---PHGKHSSSIGV-----LMQNVGTVVA 257

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G  ++ P      +      L+       + 
Sbjct: 258 IKRAIIDGEPLI----------ERVVTLTGDALSQPGNFWARIGTPVRHLLVLAGFKPQP 307

Query: 276 GWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                  VI GG  +   LP   +    +    L  + + +G +                
Sbjct: 308 QP----VVIMGGPLMGFTLPTLDVPIVKISNCILAPVETEIGLSQ--------------- 348

Query: 335 RLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
                 + E+C +C  C +      + + +    +G   ++
Sbjct: 349 ------QEEACIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 383


>gi|153938051|ref|YP_001391784.1| putative electron transport protein [Clostridium botulinum F str.
           Langeland]
 gi|152933947|gb|ABS39445.1| putative electron transport protein [Clostridium botulinum F str.
           Langeland]
          Length = 436

 Score = 83.5 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 39/237 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +    Y++ N  E EP    +  +  + P  +I+G   A  A  A 
Sbjct: 97  FPTHVKLK-----ANIPDGYVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++G+  +  E L+  ++                  +I +      Y  GEE AL+
Sbjct: 152 KAYIGIKGKRKKAIEVLKEHLENEK---------------NIQIKEVIDIYPSGEERALI 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+ G+  +P  + P  AN         V N E++A +   +               +  
Sbjct: 197 HSIFGEWLKP-TQIPIEAN-------CVVLNAETLANITRAVEDRKPVIDKDITLMGKLK 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           K   I  HV     ++E +  +  ++IE  CGGI G +     +I GG     LP  
Sbjct: 249 K--GIGPHV----FLQEPIGKSMKDMIE-ICGGIDGEYGE---IIIGGPHTG-LPED 294


>gi|145299426|ref|YP_001142267.1| electron transport complex protein RnfC [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852198|gb|ABO90519.1| electron transport complex protein RnfC [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 753

 Score = 83.5 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 88/283 (31%), Gaps = 43/283 (15%)

Query: 27  GHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADE 86
           G            R  ++  ++ +G+ G GGA F T  K              L+VN  E
Sbjct: 120 GEHQGKPDYWNLDRGELLERIQQAGIAGLGGAVFPTHSKL----DGRGQLTEILIVNGLE 175

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EP    D  +M+     +++G  +    +      I V            AA+ E    
Sbjct: 176 CEPYISTDDRLMQEYADEIMDGIRVLKHLLKPKLTLIGVEDNKP-------AAIAELTRH 228

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                      D D++V      Y  G     +E L G++     K     ++G+     
Sbjct: 229 A---------TDEDVLVKTVPTKYPSGGAKQTIELLTGRQV---PKGGRAVDMGI----- 271

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDEL 265
            V NV ++  +   +  G    S          ++ +++G     P      +      L
Sbjct: 272 MVLNVATVFAIKRAIIDGEPLIS----------RIVTLTGDAFKKPGNAWVLLGTPVRWL 321

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
           +++         +    VI GG  +       M   +   + L
Sbjct: 322 LQRF----ELQPEADQRVIMGGPMMGFTLPHAMVPVVKATNCL 360


>gi|253699315|ref|YP_003020504.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter sp. M21]
 gi|251774165|gb|ACT16746.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter sp. M21]
          Length = 670

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTGW 357
               + YDG + + + +G   +I+ ++  DI   +       + +  CG+CTP ++GT  
Sbjct: 27  FKLPVSYDGERPLSAFIGWDGIILYNKDVDIPAMVAEYMKRVQTKYVCGKCTPGKKGTRV 86

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           MM  +  +V+G   ++++D + ++ + ++    C L  +++ P+   + +FR      + 
Sbjct: 87  MMDALAAIVEGRGSEKDLDTILDLGEVLK-HCKCTLCPSSSVPVIDAVTHFRDAFVNYVR 145

Query: 418 QYH 420
              
Sbjct: 146 GAK 148


>gi|254242172|ref|ZP_04935494.1| hypothetical protein PA2G_02903 [Pseudomonas aeruginosa 2192]
 gi|126195550|gb|EAZ59613.1| hypothetical protein PA2G_02903 [Pseudomonas aeruginosa 2192]
          Length = 774

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 108/339 (31%), Gaps = 59/339 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
            +    ++  ++A+G+ G GGAGF T  K   +    +++ H LVVN  E EP    D  
Sbjct: 121 AESPLALLERIRAAGIGGLGGAGFPTAAK---LAARPAEKIHTLVVNGAECEPYISADDL 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      + +  +      +L AA         LG      
Sbjct: 178 LMRERATQVLGGIDILVQILRPEEVLVGIEDDKPEAIAALSAA---------LGERPY-- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 +      Y  G E  L++ L G++         PA++G+        NV ++A 
Sbjct: 227 -----RIVALPTRYPSGGERQLIQLLTGREVPADG---LPADIGI-----LCQNVGTLAA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   +  G           +R T L    G +  P  VE  +     EL+          
Sbjct: 274 VHDAVVLGRPLI-------SRITTLAG--GALERPMNVEALIGTPVHELLAFAG----LA 320

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM-------DRSTDI 329
              L  V+ GG  +           I   + L    +      V  M             
Sbjct: 321 EGRLERVLMGGPMMGFALPDLSVPLIKTCNCLLAGDATELPEPVPAMPCIRCGDCAQVCP 380

Query: 330 IKAIWRLSVFYK----HES--------CGQCTPCREGTG 356
           +  + +   F+     HE         C +C  C     
Sbjct: 381 VSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|323142352|ref|ZP_08077184.1| pyridine nucleotide-disulfide oxidoreductase [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413236|gb|EFY04123.1| pyridine nucleotide-disulfide oxidoreductase [Phascolarctobacterium
           sp. YIT 12067]
          Length = 668

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 42/101 (41%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +I        +            ++CG+C PCR G   +  +ME ++ G A    +DL+ 
Sbjct: 79  IIASPPGLCPVDLQLSFLKVCHAQTCGKCVPCRVGLAQLQNLMEDVLAGKADMHTLDLIE 138

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
             ++N+     CA+G  AA  +   ++ FR      I +  
Sbjct: 139 STAQNVANSADCAIGFEAAKMVLAGLEGFREDYINHIKKGK 179


>gi|50121206|ref|YP_050373.1| electron transport complex protein RnfC [Pectobacterium
           atrosepticum SCRI1043]
 gi|81693263|sp|Q6D4W2|RNFC_ERWCT RecName: Full=Electron transport complex protein rnfC; AltName:
           Full=Nitrogen fixation protein rnfC
 gi|49611732|emb|CAG75181.1| electron transport complex protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 693

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 107/359 (29%), Gaps = 78/359 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +        L++N  E EP    D  +M+     +I+G  I SF +   
Sbjct: 152 FPTAAKLQGGMRG----IETLIINGAECEPYITADDRLMQECADEIIQGVEILSFLLQPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+               G   D+ +      Y  G    L 
Sbjct: 208 RILIGIEDNKPEAISALRLAL---------------GKRSDMQLRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          A +G+      + NV +   +   +  G               
Sbjct: 253 KILTGKEV---PFGKHSAAIGV-----LMQNVGTAYAIKRAVIDGEPLT----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  +  P  V   +      L+++  GG          V+ GG  +       +
Sbjct: 295 RVVTLTGEALRQPGNVWARLGTPVRHLLKQ--GGFHVTKQP--MVVMGGPLMGF--TLPL 348

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG- 356
               +                         ++            E SC +C+ C +    
Sbjct: 349 LDVPIVKIS-------------------NCLLAPSHSEMEPVAEEQSCIRCSKCADACPA 389

Query: 357 -WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
             + + +    +G   ++  D  + +   IE    C    A A+       L++ +R  
Sbjct: 390 GLLPQQLYWFSRGQEHEKARD--HHLFDCIE----CG---ACAYVCPSNIPLVQYYRQE 439


>gi|304397718|ref|ZP_07379595.1| electron transport complex, RnfABCDGE type, C subunit [Pantoea sp.
           aB]
 gi|304354890|gb|EFM19260.1| electron transport complex, RnfABCDGE type, C subunit [Pantoea sp.
           aB]
          Length = 947

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 110/374 (29%), Gaps = 82/374 (21%)

Query: 8   IFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           IF    G         L D                 R  I+  +  +G+ G GGAGF T 
Sbjct: 108 IFLTPDGDDRWIPLDPLPDYRQH------------PRADIVQRIHDAGVAGLGGAGFPTA 155

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            K     K        L++NA E EP    D  +M+     ++EG  I ++ + A    I
Sbjct: 156 TKL----KGGLRGVKTLIINAAECEPYITADDRLMQDYAAEVLEGSRILAWVLQAERVLI 211

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
            +         +L+ A+                   D+ +      Y  G    L   L 
Sbjct: 212 GIEDNKPEAIAALKQALGNER---------------DLHIRVIPTKYPSGGAKQLTRILT 256

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G +           ++G+      + NV +   V   +  G               ++ +
Sbjct: 257 GMEV---PHGGRSTDIGV-----LMQNVGTAWAVKRAIING----------EPITERVVT 298

Query: 244 ISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGA 301
           ++G  +  P  V   +      L+                VI GG  +   LP+  +   
Sbjct: 299 LTGESIAQPRNVWSRLGTPISHLLHHVG----FTPAPRQMVIMGGPLMGFTLPSLDVPVV 354

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMM 359
            +    L    S +G                        + +SC +C+ C +      + 
Sbjct: 355 KITNCILAPSPSEMGNND---------------------EEQSCIRCSACADACPAKLLP 393

Query: 360 RVMERLVKGIAQKR 373
           + +    +G    +
Sbjct: 394 QQLYWFSQGGDHDK 407


>gi|170758234|ref|YP_001787803.1| putative electron transport protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405223|gb|ACA53634.1| putative electron transport protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 436

 Score = 83.1 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 39/237 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +    Y++ N  E EP    +  +  + P  +I+G   A  A  A 
Sbjct: 97  FPTHVKLK-----ANIPDGYVIANCAECEPTLHHNVYLAENHPELIIKGVKYAMKATNAK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++G+  +  E L+  +                   +I +      Y  GEE AL+
Sbjct: 152 KAYIGIKGKRKKAIEVLKEHLKNEE---------------NIQIKEVIDIYPSGEERALI 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+ G+  +P  + P  AN         V N E++A +   +               +  
Sbjct: 197 HSIFGEWLKP-TQIPIEAN-------CVVLNAETLANITRAVEDRKPVIDKDITLMGKLE 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           K   I  HV     ++E +  +  ++IE  CGGI G +     +I GG     LP  
Sbjct: 249 K--GIGPHV----FLQEPIGKSMKDMIE-ICGGIDGEYGE---IIIGGPHTG-LPED 294


>gi|289423989|ref|ZP_06425778.1| FAD dependent oxidoreductase [Peptostreptococcus anaerobius 653-L]
 gi|289155564|gb|EFD04240.1| FAD dependent oxidoreductase [Peptostreptococcus anaerobius 653-L]
          Length = 610

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 42/98 (42%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           ++        I            ++CG+C PCR G G +  +ME+++   A +  IDL+ 
Sbjct: 27  IMSSPPGICPIDISLSFLSLCHAQTCGKCVPCRIGLGKLKELMEKVLSSEADESTIDLIE 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           E S+ I     CA+G  AA  +   +  FR      I 
Sbjct: 87  ETSRVIMETADCAIGTEAAEMVLKGVMGFRDDYLSHIR 124


>gi|260653770|dbj|BAI44425.1| putative NADH dehydrogenase I, F subunit [Monochamus alternatus]
          Length = 77

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 49/76 (64%), Positives = 57/76 (75%)

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           NLLA+IPGGSSVP +P        MD+D L+   SGLGTAAVIVMD+ T+II AI +LS 
Sbjct: 1   NLLAIIPGGSSVPLIPKSICDTIEMDFDSLRTAQSGLGTAAVIVMDKLTEIIAAIEKLSH 60

Query: 339 FYKHESCGQCTPCREG 354
           FY +E CGQCTPCREG
Sbjct: 61  FYMYEFCGQCTPCREG 76


>gi|117618643|ref|YP_857145.1| electron transport complex, RnfABCDGE type, C subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560050|gb|ABK36998.1| electron transport complex, RnfABCDGE type, C subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 851

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 86/272 (31%), Gaps = 43/272 (15%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             R  ++  ++ +G+ G GGA F T  K              L+VN  E EP    D  +
Sbjct: 131 LERGELLERIQQAGIAGLGGAVFPTHSKL----DGRGQLTEILIVNGLECEPYITTDDRL 186

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M+     ++EG  +    +      I V                        G  ++   
Sbjct: 187 MQEYADEIMEGIRVLKHLLKPKLTLIGVEDNKPAAI----------------GELTRHAT 230

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D D++V      Y  G     +E L G++     K     ++G+      V NV ++  +
Sbjct: 231 DEDVLVKTVPTKYPSGGAKQTIELLTGRQV---PKGGRAVDMGI-----MVLNVATVFAI 282

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +  G    S          ++ +++G     P      +      L+++        
Sbjct: 283 KRAIIDGEPLIS----------RIVTLTGDAFKKPGNAWVLLGTPVRWLLQRF----ELQ 328

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL 308
            +    VI GG  +       M   +   + L
Sbjct: 329 PEADQRVIMGGPMMGFTLPHAMVPVVKATNCL 360


>gi|187932923|ref|YP_001885655.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Clostridium botulinum B str. Eklund 17B]
 gi|187721076|gb|ACD22297.1| respiratory-chain NADH dehydrogenase domain, 51 kda subunit
           [Clostridium botulinum B str. Eklund 17B]
          Length = 442

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 109/320 (34%), Gaps = 54/320 (16%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +++ VK +G+ G GGAGF T +K        + +  Y+++N  E EP    D+ +M   P
Sbjct: 3   LLDMVKDAGVIGAGGAGFPTHVKL-------ASKAEYILLNGAECEPLLRVDQQLMELFP 55

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +I+G   A   + A    I ++G+       L+  ++E +   L            I 
Sbjct: 56  DEVIKGFETARSIVNAKKGIIGIKGKHKEVISILRNRINELHVGDL------------IE 103

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           V      Y  G+E  L+  L G+      +   P  VG       V N E+   +     
Sbjct: 104 VKELPDIYPAGDEQVLVYELTGRVV---PEVGIPIQVG-----CVVVNSETALNIYNAS- 154

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLA 282
                        +   K  +I+G +    TV+  + I   ++++         +    +
Sbjct: 155 ----------MGKSVTEKYITIAGDIPNRKTVKVPIGIPIIDVLKLSGIENFHNY----S 200

Query: 283 VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH 342
           VI GG  +  +                           +++     +I+         K 
Sbjct: 201 VIDGGPMMGPVMKNLDGYVTKK------------NKGFVILKNDHPLIRKKSVTMDQAKK 248

Query: 343 ESCGQCTPCREGTGWMMRVM 362
            +   C  CR  T    R +
Sbjct: 249 INKSSCEQCRMCTDMCPRFL 268


>gi|170756335|ref|YP_001782031.1| putative electron transport protein [Clostridium botulinum B1 str.
           Okra]
 gi|169121547|gb|ACA45383.1| putative electron transport protein [Clostridium botulinum B1 str.
           Okra]
          Length = 436

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 39/237 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +    Y++ N  E EP    +  +  + P  +I+G   A  A  A 
Sbjct: 97  FPTHVKLK-----ANIPDGYVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++G+  +  E L+  +                   +I +      Y  GEE AL+
Sbjct: 152 KAYIGIKGKRKKAIEVLKEHLKNEE---------------NIQIKEVIDIYPSGEERALI 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+ G+  +P  + P  AN         V N E++A +   +               +  
Sbjct: 197 HSIFGEWLKP-TQIPIEAN-------CVVLNAETLANITRAVEDRKPVIDKDITLMGKLK 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           K   I  HV     ++E +  +  ++IE  CGGI G +     +I GG     LP  
Sbjct: 249 K--GIEPHV----FLQEPIGKSMKDMIE-ICGGIDGEYGE---IIIGGPHTG-LPED 294


>gi|157962176|ref|YP_001502210.1| electron transport complex protein RnfC [Shewanella pealeana ATCC
           700345]
 gi|157847176|gb|ABV87675.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           pealeana ATCC 700345]
          Length = 825

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 42/280 (15%)

Query: 13  YGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV 72
             +    L +S+          +       I+++++ +G+ G GGA F T +K S     
Sbjct: 108 CVIDADGLDESVEI----LTADVASLSNQEILSKIQQAGIAGLGGAAFPTHIKLS----- 158

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
            +     +++N  E EP    D  +MR     ++ G  I    +      I +       
Sbjct: 159 PASDIELVIINGIECEPYITSDDRLMREHSDDILAGIAIIHKLLKPKRIIIAIEDNKPEA 218

Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
            E++Q A++       L ++S         +      Y  G E  L++ L G++      
Sbjct: 219 IEAMQHALNRSE----LVTDSA-------RITAVPTKYPSGGEKQLIQILTGQEV---PS 264

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYP 251
              PA +G+      V NV +   +   +  G +             ++ +++G +   P
Sbjct: 265 GSIPAQLGM-----LVQNVGTAYAIHDAVSNGHALTR----------RVVTVTGLNSQTP 309

Query: 252 CTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
                 +      ++++         D    VI GG  + 
Sbjct: 310 GNYWVPIGTPVSHILKQLGFNGDLATDK---VIIGGPMMG 346


>gi|119774967|ref|YP_927707.1| electron transport complex protein RnfC [Shewanella amazonensis
           SB2B]
 gi|119767467|gb|ABM00038.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 880

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 39/257 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
                 ++  ++ +G+ G GGA F + +K S      +     ++VN  E EP    D  
Sbjct: 128 ALTPAQMVKRIQDAGIAGMGGAAFPSHIKLS-----PASEIELVIVNGVECEPYITADDR 182

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      I +        E++QAAV+       L       
Sbjct: 183 LMREHADGIVAGIGIVHRILAPKRIIIAIEDNKPEAAEAMQAAVNRSQLPAGL------- 235

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
               + V      Y  G E  L++ + G++         PA +G+      V+NV ++  
Sbjct: 236 ----VRVTVIPTKYPSGGEKQLIQIVTGQEV---PSGAIPAQLGI-----LVHNVGTLFA 283

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   +  G               ++ +++G+ V  P      +    ++++ +HC     
Sbjct: 284 IRDAVIEG----------KPLIERVVTVTGNAVTKPGNYWTLIGSKVEDVL-RHCD---F 329

Query: 276 GWDNLLAVIPGGSSVPC 292
                  +I GG  +  
Sbjct: 330 REAEAQKIIMGGPMMGY 346


>gi|188590725|ref|YP_001921031.1| putative glutamate synthase (NADPH) small subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188501006|gb|ACD54142.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 611

 Score = 82.7 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +I        +          + ++CG+C PCR G   +  +++ ++   A    IDL+ 
Sbjct: 27  IIASPPGLCPVDMASSFLKLCQAQTCGKCVPCRIGLAQLENLIDDVLNRKATLETIDLIE 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + +K +     CA+G  AA  +   I  F+    E I   +RC
Sbjct: 87  KTAKVVIDSADCAIGYEAANMVLKGIVGFKSDYIEHIVN-NRC 128


>gi|262039817|ref|ZP_06013093.1| propanediol utilization protein PduS [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042875|gb|EEW43870.1| propanediol utilization protein PduS [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 450

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 96/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R   ++VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 33  FPTHIKLQA-------RVDTVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMTATGAQ 85

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++        AA+                      +H     Y  G+E   +
Sbjct: 86  EGIIALKAKYAPAI----AALTPRLPEWA-------------RLHILPDVYPAGDEVLTI 128

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P   P     V        VNNV+++  +   + +G               
Sbjct: 129 WLATGRRVPPAALPVSVGVV--------VNNVQTVLNIARAVEQGYPVTR---------- 170

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + I+  E+++   G            I GG  +  L      
Sbjct: 171 RTLTVNGAVARPLTLAVPLGISLREVLDLAGGATVDDP----GFINGGPMMGSLITS--L 224

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  +  +I+      R  +      C QC  C +   
Sbjct: 225 ETPVTKT----------TGGLLVLPGNHPLIQRRRQDERTLLAIARTVCEQCRLCTDLCP 274

Query: 357 W 357
            
Sbjct: 275 R 275


>gi|119944507|ref|YP_942187.1| electron transport complex, RnfABCDGE type, C subunit [Psychromonas
           ingrahamii 37]
 gi|119863111|gb|ABM02588.1| electron transport complex, RnfABCDGE type, C subunit [Psychromonas
           ingrahamii 37]
          Length = 857

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 96/277 (34%), Gaps = 45/277 (16%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDR 76
            +S++       +        +    +I+ ++ SG+ G GG GF + +K S      +  
Sbjct: 123 DRSIA-YKKPQDYQ------TQPAALLIDLIQQSGIIGMGGGGFPSHLKLS-----NAHN 170

Query: 77  PHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESL 136
              L++NA E EP    D  +M+     LI G  I    +        +     +   ++
Sbjct: 171 VKLLIINAIECEPYITADDRLMQEHADQLITGIEILQHILKPTLTIFAIEDNKPQAIAAI 230

Query: 137 QAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFP 196
             A+ +   S  L  N        + V   A  Y  G E  L+E + G++         P
Sbjct: 231 NLAIKQAPES--LQKN--------LRVSIIATRYPSGGEKQLIEMITGQQI---PLGQHP 277

Query: 197 ANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVE 255
             +G+      + NV ++  V   +  G              +++ +++G          
Sbjct: 278 TALGI-----VMYNVGTVFAVKEAIIDG----------KPLISRIVTLTGDAFKKKGNAN 322

Query: 256 ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
             +      L+E++         ++  ++ GG  +  
Sbjct: 323 VRIGTPIQYLLEQYG----LEKKHVQKLLIGGPMMGF 355


>gi|226949841|ref|YP_002804932.1| putative electron transport protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842451|gb|ACO85117.1| putative electron transport protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 436

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 39/237 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +    Y++ N  E EP    +  +  + P  +I+G   A  A  A 
Sbjct: 97  FPTHVKLK-----ANIPDGYVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++G+  +  E L+  +                   +I +      Y  GEE AL+
Sbjct: 152 KAYIGIKGKRKKAIEVLKEHLKNEE---------------NIQIKEVIDIYPSGEERALI 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+ G+  +P  + P  AN         V N E++A +   +               +  
Sbjct: 197 HSIFGEWLKP-TQIPIEAN-------CVVLNAETLANITRAVEDRKPVIDKDITLMGKLK 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           K   I  HV     ++E +  +  ++IE  CGGI G +     +I GG     LP  
Sbjct: 249 K--GIGPHV----FLQEPIGKSMKDMIE-ICGGIDGEYGE---IIIGGPHTG-LPED 294


>gi|213580723|ref|ZP_03362549.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 394

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 90/267 (33%), Gaps = 54/267 (20%)

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D+ +M  +   L+ G   A  A GA    I ++ ++ R  +    A+     +G      
Sbjct: 4   DQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAID----ALSPLLPAG------ 53

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
                  I +H     Y  G+E   +    G++  P      PA+VG+      VNNV++
Sbjct: 54  -------IRLHILPDVYPAGDEVLTIWMATGRRVAP---AALPASVGV-----VVNNVQT 98

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
           +  +   + +                +  +++G V  P TV   + ++  E++    G  
Sbjct: 99  VLNIARAVEQQFPVTR----------RTLTVNGAVARPLTVTVPVGMSLHEVLALAGGAT 148

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                     I GG  +  L         +             T  ++V+ +S  +I+  
Sbjct: 149 VDNP----GFINGGPMMGGLITS--LDNPVTKT----------TGGLLVLPKSHPLIQRR 192

Query: 334 W---RLSVFYKHESCGQCTPCREGTGW 357
               R  +      C QC  C +    
Sbjct: 193 MQDERTVLSVARTVCEQCRLCTDLCPR 219


>gi|146292946|ref|YP_001183370.1| electron transport complex protein RnfC [Shewanella putrefaciens
           CN-32]
 gi|145564636|gb|ABP75571.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           putrefaciens CN-32]
          Length = 793

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 99/314 (31%), Gaps = 52/314 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F + +K +      +     +++N  E EP    D  +MR     ++ G  I    +   
Sbjct: 151 FPSHIKLN-----PASEIDLVIINGVECEPYISSDDRLMREYSQDILAGIAIIYRLLTPK 205

Query: 120 CAFIYVRGEFIRERESLQAAV-DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETAL 178
              I +        +++Q AV      +G             I V      Y  G E  L
Sbjct: 206 RIVIAIEDNKPEAIKAMQMAVTQSALPTG------------SIRVTVIPTKYPSGGEKQL 253

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           ++ + G++         PA +G+      V+NV +   +   + +          +    
Sbjct: 254 IQIITGREV---PSGAIPAKLGI-----VVHNVGTAFAIHQAVVQ----------DKPLV 295

Query: 239 TKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
            ++ +++G +V  P      +    + ++ +           ++     G ++P +    
Sbjct: 296 ERVVTVTGKNVGKPGNYWLPIGTPVEHVLMQTEFKPESEQKIIVGGPMMGHALPTINVPI 355

Query: 298 MRGA-IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES------------ 344
           ++G   +     +E+G      A I      ++  A+      + H              
Sbjct: 356 LKGTNCILVPSNQEIGVTPEEKACIRCGECANVCPALLLPQQLFWHAKAEEYDKAASFNL 415

Query: 345 --CGQCTPCREGTG 356
             C +C  C     
Sbjct: 416 KDCIECGCCSYVCP 429


>gi|46204507|ref|ZP_00049890.2| COG1894: NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
           subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 76

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/62 (74%), Positives = 53/62 (85%)

Query: 182 LEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKL 241
           +EGKKG PRLKP FPAN+GLYGCPT+VNNVESIAV  TILRRG +W++G G +NN GTKL
Sbjct: 1   MEGKKGMPRLKPTFPANMGLYGCPTSVNNVESIAVAGTILRRGGAWFAGLGAKNNTGTKL 60

Query: 242 FS 243
           F 
Sbjct: 61  FM 62


>gi|328955432|ref|YP_004372765.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Coriobacterium glomerans PW2]
 gi|328455756|gb|AEB06950.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Coriobacterium glomerans PW2]
          Length = 609

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 327 TDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
              ++    L      +SCG+CTPCR G G +   +E+++ G A  + + ++   ++ I 
Sbjct: 34  PCPVEFTAALVNLCATQSCGKCTPCRVGLGVLADQLEKVLAGRADDQTLKVIERTAETIY 93

Query: 387 GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
             + CA+G  A       I+ FR   E  + +   C F
Sbjct: 94  RSSDCAIGYEAGSMALTAIRGFRDDFEHHL-RTGACGF 130


>gi|197117055|ref|YP_002137482.1| Fe(III) reductase subunit beta [Geobacter bemidjiensis Bem]
 gi|197086415|gb|ACH37686.1| Fe(III) reductase, beta subunit [Geobacter bemidjiensis Bem]
          Length = 670

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 59/127 (46%), Gaps = 2/127 (1%)

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCRE 353
                   + YDG + + + +G   +I+ ++  D+   +       + +  CG+CTP ++
Sbjct: 23  KEVSFKLPVSYDGERPLSAFIGWDGIILYNKDVDVPAMVAEYMKRVQTKYVCGKCTPGKK 82

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           GT  MM  +  +V+G   ++++D + ++ + ++    C L  +++ P+   + +FR    
Sbjct: 83  GTRVMMDALLAIVEGRGSEQDLDTILDLGEVLK-HCKCTLCPSSSVPVIDAVTHFRDAFV 141

Query: 414 ERIDQYH 420
             +    
Sbjct: 142 NYVRGAK 148


>gi|82523738|emb|CAI78738.1| predicted NADH:ubiquinone oxidoreductase, subunit RfnC [uncultured
           gamma proteobacterium]
          Length = 671

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 94/325 (28%), Gaps = 80/325 (24%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F + +K S            L++N  E EP    D  +MR  P  +IEG  I    I   
Sbjct: 144 FPSAVKLSV---RDDVHIETLIINGTECEPYITADDVLMRERPDQIIEGAKILRHLIAPQ 200

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I V         +L+AA +              G    I V      Y  G E  L+
Sbjct: 201 ETLIGVEDNKPEGIAALRAAAE------------GTG----IEVVSFPTKYPSGGEKQLI 244

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           E L GK+         P+ VG+               V   L    + Y          +
Sbjct: 245 EILTGKQV---PSGGLPSAVGV---------------VCQNLGSTVAIYDAVVLGRPLIS 286

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  V  P   E  +      L+EK         +    +I GG  +        
Sbjct: 287 RITTVTGESVREPQNFEVLIGTPMIYLLEKAG----YQPEKNNRLIMGGPMM-------- 334

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE--------SCGQCTP 350
                                  V D    I+K    L      E        +C +C  
Sbjct: 335 --------------------GFTVPDPRVPIVKTTNCLLAPTDAELPLPPPAQACIRCGM 374

Query: 351 CREGTG--WMMRVMERLVKGIAQKR 373
           C E      + + +    +G   ++
Sbjct: 375 CAEACPVSLLPQQLFWFAQGKEYEK 399


>gi|238896324|ref|YP_002921060.1| propanediol utilization polyhedral body protein [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548642|dbj|BAH64993.1| propanediol utilization polyhedral body protein [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 450

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 96/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R   ++VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 33  FPTHIKLQA-------RVDTVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMTATGAR 85

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++        AA+                      +H     Y  G+E   +
Sbjct: 86  EGIIALKAKYAPAI----AALTPRLPEWA-------------RLHILPDVYPAGDEVLTI 128

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P   P     V        VNNV+++  +   + +G               
Sbjct: 129 WLATGRRVPPAALPVSVGVV--------VNNVQTVLNIARAVEQGYPVTR---------- 170

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + I+  E+++   G            I GG  +  L      
Sbjct: 171 RTLTVNGAVARPLTLAVPLGISLREVLDLAGGATVDDP----GFINGGPMMGSLITS--L 224

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  +  +I+      R  +      C QC  C +   
Sbjct: 225 ETPVTKT----------TGGLLVLPGNHPLIQRRRQDERTLLAIARTVCEQCRLCTDLCP 274

Query: 357 W 357
            
Sbjct: 275 R 275


>gi|237748027|ref|ZP_04578507.1| rnfC protein [Oxalobacter formigenes OXCC13]
 gi|229379389|gb|EEO29480.1| rnfC protein [Oxalobacter formigenes OXCC13]
          Length = 426

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 108/324 (33%), Gaps = 65/324 (20%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
            + I+  ++A+G+ G GGA F   +K+        +     +VN  E EP    D  +MR
Sbjct: 112 PEAILQAIEAAGIVGAGGAQFPAALKYRL----AGEDIKTFIVNGVECEPYLTADYAVMR 167

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
                  EG  + +  + A    I          E     ++    +  L      G+  
Sbjct: 168 ERTQAFFEGIRLVNTLLRAKEVVI--------AIEEKNRELE-AVFAPFLTQPRYAGF-- 216

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
              V   +G Y  G +  L+ ++ G +  P   P   A  G+      V+NV ++     
Sbjct: 217 --RVKVVSGGYPQGSQWQLVCAVTGLELAP---PRHAAGEGI-----VVSNVATVY---- 262

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
                 + Y     +    +++ ++SG  V +P  +E  +      ++E+          
Sbjct: 263 ------AAYQAVVEKRPVVSRILTVSGEGVGHPGNIEVPIGTPVGYVLEQMG-----VSS 311

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
           +   ++ GG  +  L                      GT  V+V +R T           
Sbjct: 312 DRYTIVLGGPMMGRLVTDWSSPVT------------KGTNGVLVFERQT----------- 348

Query: 339 FYKHESCGQCTPCREGTGWMMRVM 362
               E+C  C  C +     +  +
Sbjct: 349 -VDRENCIGCGRCIDACPMRLMPL 371


>gi|152971737|ref|YP_001336846.1| propanediol utilization: polyhedral bodies [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|330009165|ref|ZP_08306449.1| Respiratory-chain NADH dehydrogenase subunit [Klebsiella sp. MS
           92-3]
 gi|150956586|gb|ABR78616.1| Propanediol utilization: polyhedral bodies [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328534884|gb|EGF61421.1| Respiratory-chain NADH dehydrogenase subunit [Klebsiella sp. MS
           92-3]
          Length = 450

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 96/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R   ++VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 33  FPTHIKLQA-------RVDTVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMTATGAR 85

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++        AA+                      +H     Y  G+E   +
Sbjct: 86  EGIIALKAKYAPAI----AALTPRLPEWA-------------RLHILPDVYPAGDEVLTI 128

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P   P     V        VNNV+++  +   + +G               
Sbjct: 129 WLATGRRIPPAALPVSVGVV--------VNNVQTVLNIARAVEQGYPVTR---------- 170

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + I+  E+++   G            I GG  +  L      
Sbjct: 171 RTLTVNGAVARPLTLAVPLGISLREVLDLAGGATVDDP----GFINGGPMMGSLITS--L 224

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  +  +I+      R  +      C QC  C +   
Sbjct: 225 ETPVTKT----------TGGLLVLPGNHPLIQRRRQDERTLLAIARTVCEQCRLCTDLCP 274

Query: 357 W 357
            
Sbjct: 275 R 275


>gi|253688410|ref|YP_003017600.1| electron transport complex, RnfABCDGE type, C subunit
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259494051|sp|C6DH15|RNFC_PECCP RecName: Full=Electron transport complex protein rnfC
 gi|251754988|gb|ACT13064.1| electron transport complex, RnfABCDGE type, C subunit
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 747

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 96/317 (30%), Gaps = 64/317 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +        L++N  E EP    D  +M+     +I+G  I SF +   
Sbjct: 152 FPTAAKLQGGMRG----IETLIINGAECEPYITADDRLMQECADEIIQGVEILSFLLQPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+               G   D+ +      Y  G    L 
Sbjct: 208 RILIGIEDNKPEAISALRLAL---------------GKRSDMQLRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          A +G+      + NV +   +   +  G               
Sbjct: 253 KILTGKEV---PFGKHSAAIGV-----LMQNVGTAFAIKRAVIDGEPLT----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  +  P  V   +      L+++  GG          V+ GG  +        
Sbjct: 295 RVVTLTGEALRQPGNVWARLGTPVRHLLKQ--GGFHVNKQP--MVVMGGPLMGFTLPSLD 350

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-- 356
              +   + L                  T++           + +SC +C+ C +     
Sbjct: 351 VPIVKISNCLLA-------------PSHTEMEPVA-------EEQSCIRCSQCADACPAG 390

Query: 357 WMMRVMERLVKGIAQKR 373
            + + +    +G   ++
Sbjct: 391 LLPQQLYWFSRGQEHEK 407


>gi|222033775|emb|CAP76516.1| Propanediol utilization protein [Escherichia coli LF82]
 gi|312946633|gb|ADR27460.1| predicted propanediol utilization protein [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 447

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMVQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +I+G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTINGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|226940149|ref|YP_002795222.1| electron transport complex protein RnfC [Laribacter hongkongensis
           HLHK9]
 gi|226715075|gb|ACO74213.1| electron transport complex protein RnfC [Laribacter hongkongensis
           HLHK9]
          Length = 620

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 106/333 (31%), Gaps = 72/333 (21%)

Query: 35  ILEKGRDWII-NEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCK 93
             ++     + N +   G+ G GGA F TG+      KV ++    LV+N  E EP    
Sbjct: 117 AWQQMPAATLQNALADQGVVGLGGAVFPTGL------KVAAEGLETLVINGAECEPYITC 170

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D  +MR     +++G  + +  +      + +                    + ++ + +
Sbjct: 171 DDRLMRERAADIVKGIRLLAERMQPREVLVGIEDNKPEA------------IAAMMAAVA 218

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
             G    I V      Y  G    L+  L GK+             G+        NV +
Sbjct: 219 GTG----IEVVPVPTRYPGGGAKQLIRVLTGKEV---PHGRRSTEFGV-----QCFNVAT 266

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
              V   L  G    S          +L +++G V  P  VE  +    D L++      
Sbjct: 267 AYTVWQALECGIPIVS----------RLVTLTGAVTRPGNVEALIGTPADWLMQSAGLLA 316

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST---DII 330
                    +I GG  +  +              L + G+G+  A   ++ ++       
Sbjct: 317 GHD-----GIIMGGPMMGFV--------------LPDAGAGITKATNCLIGKTRQLFPPR 357

Query: 331 KAIWRLSVFYKHESCGQCTPCREGTGWMMRVME 363
            A            C +C  C +     ++ M+
Sbjct: 358 PAAL---------PCIRCGECAKACPTDLQPMD 381


>gi|168182565|ref|ZP_02617229.1| putative electron transport protein [Clostridium botulinum Bf]
 gi|237795927|ref|YP_002863479.1| putative electron transport protein [Clostridium botulinum Ba4 str.
           657]
 gi|182674104|gb|EDT86065.1| putative electron transport protein [Clostridium botulinum Bf]
 gi|229262386|gb|ACQ53419.1| putative electron transport protein [Clostridium botulinum Ba4 str.
           657]
          Length = 436

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 84/237 (35%), Gaps = 39/237 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +    Y++ N  E EP    +  +  + P  +I+G   A  A  A 
Sbjct: 97  FPTHVKLK-----ANIPEGYIIANCAECEPTLHHNVYLAENNPELIIKGIKYAMKATNAK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++G+  +  E L+  +                   +I +      Y  GEE AL+
Sbjct: 152 KAYIGIKGKRKKAIEVLKEHLKNEQ---------------NIQIKEVIDIYPSGEERALI 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P  + P  AN         V NVE++A +   +               +  
Sbjct: 197 HFIFGEWLAP-TQIPIEAN-------CVVLNVETLANITRAVEDRKPVIDKDITLMGKLK 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           K   I  HV     ++E +  +  ++IE   G      +    +I GG     LP  
Sbjct: 249 K--GIGPHV----FLQEPIGKSMKDMIETCGGIDGQYGE----IIIGGPHTG-LPED 294


>gi|285013341|gb|ADC32658.1| PduS [Klebsiella pneumoniae]
          Length = 450

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 96/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R   ++VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 33  FPTHIKLQA-------RVDTVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMTATGAR 85

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++        AA+                      +H     Y  G+E   +
Sbjct: 86  EGIIALKAKYAPAI----AALTPRLPEWA-------------RLHILPDVYPAGDEVLTI 128

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P   P     V        VNNV+++  +   + +G               
Sbjct: 129 WLATGRRVPPAALPVSVGVV--------VNNVQTVLNIARAVEQGYPVTR---------- 170

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + I+  E+++   G            I GG  +  L      
Sbjct: 171 RTLTVNGAVARPLTLAVPLGISLREVLDLAGGATVDEP----GFINGGPMMGSLITS--L 224

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  +  +I+      R  +      C QC  C +   
Sbjct: 225 ETPVTKT----------TGGLLVLPGNHPLIQRRRQDERTLLAIARTVCEQCRLCTDLCP 274

Query: 357 W 357
            
Sbjct: 275 R 275


>gi|325261657|ref|ZP_08128395.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
 gi|324033111|gb|EGB94388.1| Fe-hydrogenase, beta subunit [Clostridium sp. D5]
          Length = 400

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMR 360
                  L    + +    + ++     I+          + +SCG+C  CREG   +  
Sbjct: 194 RPETAAALTVGEAEIDNGLLRILTEKDCIVAETDEKLTASRKQSCGRCVFCREGLLQLQY 253

Query: 361 VMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYH 420
           +   + +G  +   ID+  E+ + +E  T C +G  +A  +   ++ F    E  + +  
Sbjct: 254 MNNEIKEGRGKPDYIDMTKEIGEAMEFSTPCTMGQVSAKIVLSAVELFEKEYELHMKK-K 312

Query: 421 RCN 423
            C 
Sbjct: 313 TCP 315


>gi|320193292|gb|EFW67930.1| Cob(III)alamin reductase @ Cob(II)alamin reductase [Escherichia
           coli WV_060327]
          Length = 447

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMVQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +I+G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTINGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DPPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLTVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|215487226|ref|YP_002329657.1| predicted propanediol utilization protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967235|ref|ZP_07781451.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Escherichia
           coli 2362-75]
 gi|215265298|emb|CAS09693.1| predicted propanediol utilization protein [Escherichia coli O127:H6
           str. E2348/69]
 gi|312288043|gb|EFR15947.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Escherichia
           coli 2362-75]
          Length = 447

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMVQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +I+G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTINGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLTVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|331668702|ref|ZP_08369550.1| propanediol utilization protein [Escherichia coli TA271]
 gi|331063896|gb|EGI35807.1| propanediol utilization protein [Escherichia coli TA271]
          Length = 447

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMAQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTVNGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRLQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|323183789|gb|EFZ69180.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Escherichia
           coli 1357]
          Length = 447

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMAQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTVNGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRLQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|37526280|ref|NP_929624.1| electron transport complex protein RnfC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785711|emb|CAE14696.1| Electron transport complex protein RnfC [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 852

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 109/358 (30%), Gaps = 76/358 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +        L++NA E EP    D  +M+   + LIEG  I    +   
Sbjct: 152 FPTAAKL----QSGRHGLKTLIINAAECEPYITADDRLMQEHANELIEGIRILEHLLKPE 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        + L+  +                 D  IIV      Y  G    L 
Sbjct: 208 QILIGIEDNKPAAIKKLKTVLKG---------------DKSIIVRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          + +G+      + NV ++  +   +  G               
Sbjct: 253 KILTGKEV---PSGGRSSTIGV-----LMQNVGTVVAIKRAIIDGEPLI----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +I+G  V  P      +      L++           +   VI GG  +        
Sbjct: 295 RVVTITGEAVTSPGNFWARLGTPVQFLLQLAG----FAPQSEQMVIMGGPLMGF------ 344

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-- 356
                    L ++   +   +  ++  S   + +          E+C +C  C E     
Sbjct: 345 --------TLPDLNVPIVKISNCILAPSHQEMDSN------TTEEACIRCGLCVEACPAR 390

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
            + + +    +G   ++  D  + +   IE    C    A A+       L++ +R  
Sbjct: 391 LLPQQLYWFSRGQEHEKARD--HNLFDCIE----CG---ACAYVCPSNIPLVQYYRQE 439


>gi|306814873|ref|ZP_07449035.1| putative propanediol utilization protein [Escherichia coli NC101]
 gi|305852267|gb|EFM52719.1| putative propanediol utilization protein [Escherichia coli NC101]
          Length = 447

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMVQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +I+G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTINGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|90414621|ref|ZP_01222593.1| polyhedral body protein [Photobacterium profundum 3TCK]
 gi|90324254|gb|EAS40826.1| polyhedral body protein [Photobacterium profundum 3TCK]
          Length = 443

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 90/281 (32%), Gaps = 55/281 (19%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           ++ N  E EP   KD+ +M+     L  G +IA   +GA    I ++ +       LQA 
Sbjct: 34  VLANGAECEPLLYKDQVLMQRWGKELCGGMLIAMKQVGAARGVIGIKKKNADTIACLQAQ 93

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +               G    I +      Y  G+E  L+    GK+         P  +
Sbjct: 94  L-------------PSG----IELLLMEDVYPAGDEVELVYQATGKRI---PSGGLPKEI 133

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           G+      VNN+ES   V    +                  + ++ G V  P T    + 
Sbjct: 134 GV-----MVNNIESFINVFHAAQ-----------GIPVTETMITVHGEVRQPYTAWLPIG 177

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
           +++ E IE               V+ GG  +  +         +              + 
Sbjct: 178 LSYREAIELAGDITSRD----FIVVEGGPMMGSVTDN--LDKPITKIS----------SG 221

Query: 320 VIVMDRSTDIIKAIWRLSVFYKH---ESCGQCTPCREGTGW 357
           ++V+ RS+ I     R     +     +C QC+ C      
Sbjct: 222 LLVLPRSSRIATIKMRSEQNLRRIGKAACDQCSMCTSMCPR 262


>gi|324008946|gb|EGB78165.1| respiratory-chain NADH dehydrogenase subunit [Escherichia coli MS
           57-2]
          Length = 447

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMVQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +I+G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTINGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|257452106|ref|ZP_05617405.1| hydrogenase, Fe-only [Fusobacterium sp. 3_1_5R]
 gi|317058652|ref|ZP_07923137.1| hydrogenase [Fusobacterium sp. 3_1_5R]
 gi|313684328|gb|EFS21163.1| hydrogenase [Fusobacterium sp. 3_1_5R]
          Length = 652

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 21/193 (10%)

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+  ++G V  P  V+    +T  ++I    G          A   G      L + 
Sbjct: 32  TGTKVI-VAGRVEKPGVVDIEEGMTLQDVINAVGG--IKNKKQFKAAQFGIPFGGFLTSK 88

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH---ESCGQCTPCRE 353
            +    +D+    E         +I++     II        F +    E+  +     +
Sbjct: 89  HL-DKPIDFSLFPE-----NERNMIILSDEDCIISFSKFYIEFLQDMVSENDEKYAAYHQ 142

Query: 354 GT---GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
            T     + R+++R+ KG +  R++ LL  +S  I+ +    L       +  +I  F  
Sbjct: 143 VTHEVERIGRILDRISKGKSNMRDVYLLRYLSDIIKTK----LNQK-HNMVLEIIDTFYD 197

Query: 411 LIEERIDQYHRCN 423
            IEE ++   +C 
Sbjct: 198 EIEEHVEDL-KCP 209


>gi|257466098|ref|ZP_05630409.1| hydrogenase, Fe-only [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917255|ref|ZP_07913495.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691130|gb|EFS27965.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 652

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 21/193 (10%)

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            GTK+  ++G V  P  V+    +T  ++I    G          A   G      L + 
Sbjct: 32  TGTKVI-VAGRVEKPGVVDIEEGMTLQDVINAVGG--IKNKKQFKAAQFGIPFGGFLTSK 88

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH---ESCGQCTPCRE 353
            +    +D+    E         +I++     II        F +    E+  +     +
Sbjct: 89  HL-DKPIDFSLFPE-----NERNMIILSDEDCIISFSKFYIEFLQDMVSENDEKYAAYHQ 142

Query: 354 GT---GWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
            T     + R+++R+ KG +  R++ LL  +S  I+ +    L       +  +I  F  
Sbjct: 143 VTHEVERIGRILDRISKGKSNMRDVYLLRYLSDIIKTK----LNQK-HNMVLEIIDTFYD 197

Query: 411 LIEERIDQYHRCN 423
            IEE ++   +C 
Sbjct: 198 EIEEHVEDL-KCP 209


>gi|322806755|emb|CBZ04324.1| electron transferring subunit of proline reductase [Clostridium
           botulinum H04402 065]
          Length = 436

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 39/237 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +    Y++ N  E EP    +  +  + P  +I+G   A  A  A 
Sbjct: 97  FPTHVKLK-----ANIPDGYVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++G+  +  E L+  +                   +I +      Y  GEE AL+
Sbjct: 152 KAYIGIKGKRKKAIEVLREHLKNEK---------------NIQIKEVIDIYPSGEERALI 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+ G+   P  + P  AN         V N E++A +   +               +  
Sbjct: 197 HSIFGEWLAP-TQIPIEAN-------CVVLNAETLANITRAVEDRKPVIDKDITIMGKLK 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           K   I  HV     ++E +  +  ++IE  CGGI G +     +I GG     LP  
Sbjct: 249 K--GIGPHV----FLQEPIGKSMKDMIE-ICGGIDGEYGE---IIIGGPHTG-LPED 294


>gi|120598969|ref|YP_963543.1| electron transport complex protein RnfC [Shewanella sp. W3-18-1]
 gi|120559062|gb|ABM24989.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           sp. W3-18-1]
          Length = 793

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 98/313 (31%), Gaps = 50/313 (15%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F + +K +      +     +++N  E EP    D  +MR     ++ G  I    +   
Sbjct: 151 FPSHIKLN-----PASEIDLVIINGVECEPYISSDDRLMREYSQDILAGIGIIYRLLTPK 205

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        +++Q AV +        S    G      V      Y  G E  L+
Sbjct: 206 RIVIAIEDNKPEAIKAMQMAVAQ--------SALPTGST---RVTVIPTKYPSGGEKQLI 254

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + + G++         PA +G+      V+NV +   +   + +                
Sbjct: 255 QIITGREV---PSGAIPAKLGI-----VVHNVGTAFAIHQAVVQ----------NKPLVE 296

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G +V  P      +    + ++ +           ++     G ++P +    +
Sbjct: 297 RVVTVTGKNVGKPGNYWLPIGTPVEHVLMQTEFKPEAEQKIIVGGPMMGHALPTINVPIL 356

Query: 299 RGA-IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES------------- 344
           +G   +     +E+G      A I      ++  A+      + H               
Sbjct: 357 KGTNCILVPSNQEIGVTPEEKACIRCGECANVCPALLLPQQLFWHAKAEEYDKAASFNLK 416

Query: 345 -CGQCTPCREGTG 356
            C +C  C     
Sbjct: 417 DCIECGCCSYVCP 429


>gi|323187696|gb|EFZ72997.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Escherichia
           coli RN587/1]
          Length = 447

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMVQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +I+G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTINGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|148380442|ref|YP_001254983.1| electron transferring subunit of proline reductase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934307|ref|YP_001384665.1| putative electron transport protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937710|ref|YP_001388186.1| putative electron transport protein [Clostridium botulinum A str.
           Hall]
 gi|148289926|emb|CAL84039.1| putative electron transferring subunit of proline reductase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152930351|gb|ABS35851.1| putative electron transport protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933624|gb|ABS39123.1| putative electron transport protein [Clostridium botulinum A str.
           Hall]
          Length = 436

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 39/237 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +    Y++ N  E EP    +  +  + P  +I+G   A  A  A 
Sbjct: 97  FPTHVKLK-----ANIPDGYVIANCAECEPTLHHNVYLAENHPELIIKGIKYAMKATNAK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++G+        + A++             L  + +I +      Y  GEE AL+
Sbjct: 152 KAYIGIKGK-------RKKAIELLREH--------LKNEKNIQIKEVIDIYPSGEERALI 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
            S+ G+   P  + P  AN         V N E++A +   +               +  
Sbjct: 197 HSIFGEWLAP-TQIPIEAN-------CVVLNAETLANITRAVEDRKPVIDKDITIMGKLK 248

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           K   I  HV     ++E +  +  ++IE  CGGI G +     +I GG     LP  
Sbjct: 249 K--GIGPHV----FLQEPIGKSMKDMIE-ICGGIDGEYGE---IIIGGPHTG-LPED 294


>gi|289811620|ref|ZP_06542249.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 233

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 38/220 (17%)

Query: 74  SDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER 133
            D+   L++NA E EP    D  +M+     ++EG  I +  +      I +     +  
Sbjct: 2   DDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAI 61

Query: 134 ESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKP 193
             L+A + + +               DI +      Y  G    L + L GK+       
Sbjct: 62  SMLRAVLADAH---------------DISLRVIPTKYPSGGAKQLTQILTGKQV---PHG 103

Query: 194 PFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPC 252
              +++G+      + NV +   V   +  G               ++ +++G  ++ P 
Sbjct: 104 GRSSDIGV-----LMQNVGTAYAVKRAVVDG----------EPITERVVTLTGEAISRPG 148

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
            V   +      L+                VI GG  +  
Sbjct: 149 NVWARLGTPVRHLLNDAGFCPSAD----QMVIMGGPLMGF 184


>gi|218705545|ref|YP_002413064.1| putative propanediol utilization ferredoxin PduS [Escherichia coli
           UMN026]
 gi|293405485|ref|ZP_06649477.1| Cob(III)alamin reductase @ Cob(II)alamin reductase [Escherichia
           coli FVEC1412]
 gi|298381173|ref|ZP_06990772.1| Cob(III)alamin reductase @ Cob(II)alamin reductase [Escherichia
           coli FVEC1302]
 gi|218432642|emb|CAR13537.1| putative propanediol utilization protein: ferredoxin pduS
           [Escherichia coli UMN026]
 gi|291427693|gb|EFF00720.1| Cob(III)alamin reductase @ Cob(II)alamin reductase [Escherichia
           coli FVEC1412]
 gi|298278615|gb|EFI20129.1| Cob(III)alamin reductase @ Cob(II)alamin reductase [Escherichia
           coli FVEC1302]
          Length = 447

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMAQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTVNGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRQMQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|227498966|ref|ZP_03929103.1| pyridine nucleotide-disulphide oxidoreductase [Acidaminococcus sp.
           D21]
 gi|226904415|gb|EEH90333.1| pyridine nucleotide-disulphide oxidoreductase [Acidaminococcus sp.
           D21]
          Length = 611

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             I            ++CG+C PCR G G +  ++E ++   A    ID +   +K I  
Sbjct: 35  CPIDMSLSFLRLCHAQTCGKCVPCRIGLGQLATLIESVMNRTATLETIDRIERTAKVIAD 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
              CA+G  AA  +   +K FR   EE I +  RC
Sbjct: 95  SADCAIGYEAAVMVLKGVKGFRDDYEEHILR-GRC 128


>gi|291561267|emb|CBL40066.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductases [butyrate-producing bacterium SS3/4]
          Length = 610

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G G + +++  ++ G A    +DL+ + + +I  
Sbjct: 35  CPVDMARAFLELCHAQTCGKCVPCRIGLGQLNQLIRDVLNGKATMDTLDLMEKTALSIMD 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
              CA+G  AA  +   +  +R    E I +  RC 
Sbjct: 95  SADCAIGYEAANMVYKGLIGYRDDYVEHI-RNGRCT 129


>gi|74312545|ref|YP_310964.1| putative propanediol utilization ferredoxin [Shigella sonnei Ss046]
 gi|73856022|gb|AAZ88729.1| putative propanediol utilization protein: ferredoxin [Shigella
           sonnei Ss046]
          Length = 300

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 91/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K               +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQARAD-------TFLVNAAECEPMLKVDQQLMAQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTVNGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|291458461|ref|ZP_06597851.1| Fe(III) reductase, beta subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418994|gb|EFE92713.1| Fe(III) reductase, beta subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 611

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V V    +  +            ++CG+C PCR+G   + R++++++ G A ++ +D + 
Sbjct: 27  VEVYPPGSCPLTVQLSFLRTAAGQTCGKCVPCRDGLPLVARLLQKVINGDATQQTLDNIK 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            ++  I   + CA+G  AA  +   ++ F    +  I ++H+C
Sbjct: 87  MMAMMIRESSDCAIGWNAADEVLKGLELFADEYQSHI-RFHKC 128


>gi|210621815|ref|ZP_03292844.1| hypothetical protein CLOHIR_00789 [Clostridium hiranonis DSM 13275]
 gi|210154579|gb|EEA85585.1| hypothetical protein CLOHIR_00789 [Clostridium hiranonis DSM 13275]
          Length = 611

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 41/91 (45%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            +SCG+C PCR G   +  ++  +++G A    IDL+ + +K I  
Sbjct: 35  CPVDLSLSFLTMCHAQSCGKCVPCRVGLEQLKALLTDVLEGEADLETIDLIEKTAKVIVN 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
              CA+G  AA  +   ++ FR      I+Q
Sbjct: 95  SADCAIGYEAARMVLQGVQGFRDDYVSHIEQ 125


>gi|325261486|ref|ZP_08128224.1| respiratory-chain NADH dehydrogenase 51 Kd subunit superfamily
           protein [Clostridium sp. D5]
 gi|324032940|gb|EGB94217.1| respiratory-chain NADH dehydrogenase 51 Kd subunit superfamily
           protein [Clostridium sp. D5]
          Length = 441

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 92/250 (36%), Gaps = 36/250 (14%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
            +  VK +G+ G GGAGF TG+K     K       +++VNA E EPG   +   +    
Sbjct: 78  WLEMVKEAGVVGMGGAGFPTGVKLGTDLK-----GGFILVNAVECEPGLYHNIRQIEDNI 132

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
              ++G         A  A   ++ +  +  E L+ AV +                 +I 
Sbjct: 133 EMTLKGVKYCMEISNAGKAIFAIKSKNEKAVEVLRKAVRDEE---------------NIS 177

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +H     Y  GEE A++    GK   P  + P  A+         V NVE++  V   + 
Sbjct: 178 IHLLPDIYPMGEERAVVRETLGKLLDP-TQLPSAADS-------IVINVETVLRVAEAID 229

Query: 223 RGASWYSGFGRENNRGTKLFSISGHVNYPCTV-EESMSITFDELIEKHCGGIRGGWDNLL 281
                +       ++   +       N P    +  + I+  +LIE+  G      + ++
Sbjct: 230 FRKPCF-------SKNMTVVGKLKGGNEPHVYMDVPVGISVGDLIERAGGIDGVYGEIIM 282

Query: 282 AVIPGGSSVP 291
                G +V 
Sbjct: 283 GGPFTGKAVG 292


>gi|161502783|ref|YP_001569895.1| hypothetical protein SARI_00834 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864130|gb|ABX20753.1| hypothetical protein SARI_00834 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 451

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 91/303 (30%), Gaps = 65/303 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          +    +VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 34  FPTHVKLQA-------QVDTFLVNAAECEPMLKVDQQLMALQASRLIRGVQYAMRATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++    ++L   +                    I +H     Y  G+E   +
Sbjct: 87  EGIIALKEKYQTAIKALTPLLTPA-----------------IRLHMLPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 130 WLATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + +   E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTLTVPLGMPLREVLAIAGGATVDNP----GFINGGPMMGSLIPS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVF-----YKHESCGQCTPCREG 354
            A +             T  ++V+ ++  +I    R+             C QC  C E 
Sbjct: 226 DAPVTKT----------TGGLLVLPKTHPLI--ARRMQDDRTILAIARTVCEQCRLCTEL 273

Query: 355 TGW 357
              
Sbjct: 274 CPR 276


>gi|319426525|gb|ADV54599.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           putrefaciens 200]
          Length = 793

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 111/336 (33%), Gaps = 50/336 (14%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
                 II+++  +G+ G GGA F + +K +      +     +++N  E EP    D  
Sbjct: 128 SLSHQQIIDKIHQAGVAGMGGAAFPSHIKLN-----PASEIDLVIINGVECEPYISSDDR 182

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      I +        +++Q AV +        S    G
Sbjct: 183 LMREYSQDILAGIGIIYRLLTPKRIVIAIEDNKPEAIKAMQMAVAQ--------SALPTG 234

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 V      Y  G E  L++ + G++         PA +G+      V+NV +   
Sbjct: 235 ST---RVTVIPTKYPSGGEKQLIQIITGREV---PSGAIPAKLGI-----VVHNVGTAFA 283

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRG 275
           +   + +          +     ++ +++G +V  P      +    + ++ +       
Sbjct: 284 IHQAVVQ----------DKPLVERVVTVTGKNVGKPGNYWLPIGTPVEHVLMQTEFKPEA 333

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGA-IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
               ++     G ++P +    ++G   +     +E+G      A I      ++  A+ 
Sbjct: 334 EQKIIVGGPMMGHALPTINVPILKGTNCILVPSNQEIGVTPEEKACIRCGECANVCPALL 393

Query: 335 RLSVFYKHES--------------CGQCTPCREGTG 356
                + H                C +C  C     
Sbjct: 394 LPQQLFWHAKAEEYDKAASFNLKDCIECGCCSYVCP 429


>gi|227355595|ref|ZP_03839990.1| electron transport complex protein [Proteus mirabilis ATCC 29906]
 gi|227164391|gb|EEI49280.1| electron transport complex protein [Proteus mirabilis ATCC 29906]
          Length = 673

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 88/316 (27%), Gaps = 59/316 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     K   D    L++NA E EP    D  +M+     +I GC I    +   
Sbjct: 152 FPTATKL----KGGGDLVKTLIINAAECEPYITADDRLMQEHADEVIAGCQILMHILSPD 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+             + + L  +  I +      Y  G    L 
Sbjct: 208 EVLIGIEDNKPEAIAALKQ------------ALAALTNEKRIFIRVIPTKYPSGGAKQLT 255

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          +++G+      + NV ++  +   +               +G 
Sbjct: 256 KILTGKEV---PSGGRSSDIGV-----LMQNVGTVVAIKRAIIDDEPLIERVVTVTGQGA 307

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K          P      +      LI++              VI GG  +         
Sbjct: 308 K---------TPGNFWARLGTPIYALIKQAGFVAGSE----QMVIMGGPLMGFTLPDLNA 354

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--W 357
             I   + L           +I      D              E+C +C  C +      
Sbjct: 355 PVIKITNCL-----------LIPSPEEMDTDNV---------EEACIRCGQCVDACPSGL 394

Query: 358 MMRVMERLVKGIAQKR 373
           + + +    KG   ++
Sbjct: 395 LPQQLYWFSKGKEHEK 410


>gi|331658083|ref|ZP_08359045.1| propanediol utilization protein: polyhedral bodies [Escherichia
           coli TA206]
 gi|331056331|gb|EGI28340.1| propanediol utilization protein: polyhedral bodies [Escherichia
           coli TA206]
          Length = 447

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMVQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QRAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVTP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +I+G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTINGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|53802984|ref|YP_115216.1| electron transport complex subunit C [Methylococcus capsulatus str.
           Bath]
 gi|53756745|gb|AAU91036.1| electron transport complex, C subunit [Methylococcus capsulatus
           str. Bath]
          Length = 495

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 100/314 (31%), Gaps = 64/314 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F + +K +   K    R   L++N  E EP    D  +MR     +++G +I    +   
Sbjct: 153 FPSAVKLNLGRKT---RIQTLLINGGECEPYLTCDDRLMRERAADVVDGILIMLHGLECD 209

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A + +         ++ A              +   +   + V      Y  G +  L+
Sbjct: 210 QAIVGIEDNKPEAFAAMSA--------------AAAPHGGRVQVRQVPSLYPMGWDKQLI 255

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               GK+          A++G+      ++NV +   V   +R G              +
Sbjct: 256 RYFTGKEV---PAGGRSADIGV-----LMHNVATAYAVQQAVRHG----------RPLVS 297

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ ++SG  V+ P  VE  +     +L+   CG      ++  + + GG  +        
Sbjct: 298 RIVTVSGLAVSAPRNVEAPIGTLLADLL-AFCG---HRPEDTASYVMGGPMMG------- 346

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
                    L +     G   ++ + R                  +C +C  C       
Sbjct: 347 DFLPHPRVPLVK-----GACGILALSRREVAASDAK---------ACIRCARCVSACPAG 392

Query: 359 ---MRVMERLVKGI 369
              + ++ R+  G 
Sbjct: 393 LLPLEMVARIRAGQ 406


>gi|197285165|ref|YP_002151037.1| electron transport complex protein RnfC [Proteus mirabilis HI4320]
 gi|194682652|emb|CAR42773.1| electron transport complex protein [Proteus mirabilis HI4320]
          Length = 839

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 86/316 (27%), Gaps = 59/316 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     K   D    L++NA E EP    D  +M+     +I GC I    +   
Sbjct: 152 FPTATKL----KGGGDLVKTLIINAAECEPYITADDRLMQEHADEVIAGCQILMHILSPD 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+                    I +      Y  G    L 
Sbjct: 208 EVLIGIEDNKPEAIAALKQALAALTNEK------------RIFIRVIPTKYPSGGAKQLT 255

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          +++G+      + NV ++  +   +               +G 
Sbjct: 256 KILTGKEV---PSGGRSSDIGV-----LMQNVGTVVAIKRAIIDDEPLIERVVTVTGQGA 307

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K          P      +      LI++              VI GG  +         
Sbjct: 308 K---------TPGNFWARLGTPIYALIKQAGFVAGSE----QMVIMGGPLMGFTLPDLNA 354

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--W 357
             I   + L           +I      D              E+C +C  C +      
Sbjct: 355 PVIKITNCL-----------LIPSPEEMDTDNI---------EEACIRCGQCVDACPSGL 394

Query: 358 MMRVMERLVKGIAQKR 373
           + + +    KG   ++
Sbjct: 395 LPQQLYWFSKGKEHEK 410


>gi|92110358|emb|CAJ87627.1| putative cobalamine reductase [Escherichia coli]
          Length = 447

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 91/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMAQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QLAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P  V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVNVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTVNGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|238796521|ref|ZP_04640029.1| Electron transport complex protein rnfC [Yersinia mollaretii ATCC
           43969]
 gi|238719726|gb|EEQ11534.1| Electron transport complex protein rnfC [Yersinia mollaretii ATCC
           43969]
          Length = 622

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 114/348 (32%), Gaps = 66/348 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
                 L++ +  +++ +  +G+ G GGAGF T  K              L++NA E EP
Sbjct: 89  QPWADYLQRDKIALLDRIHQAGIAGLGGAGFPTASKLQGGLNS----VTTLIINAAECEP 144

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     LI G  I    +      I +     +  E+LQ A+         
Sbjct: 145 YITADDRLMQDHADELITGIEILRHLLQPQQVLIGIEDNKPQAIEALQQAL--------- 195

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                LG+D DI +      Y  G    L + L GK+          +++G+      + 
Sbjct: 196 -----LGHD-DIQLRVVPTKYPSGGAKQLTKILTGKEV---PMGKHSSSIGV-----LMQ 241

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV ++  +   +                  ++ +++G  +  P      +      L++ 
Sbjct: 242 NVGTVVAIKRAIIDDEPLI----------ERVVTLTGDALAKPGNFWARIGTPVLHLLKL 291

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                +        VI GG  +   LP+  +    +    L    + +G +         
Sbjct: 292 AGFQPQSQP----MVIMGGPLMGFTLPSLDVPIVKISNCILAPAEAEMGLSEP------- 340

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
                          +SC +C  C +      + + +    +G   ++
Sbjct: 341 --------------EQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 374


>gi|303257905|ref|ZP_07343914.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderiales
           bacterium 1_1_47]
 gi|331000430|ref|ZP_08324105.1| pyridine nucleotide-disulfide oxidoreductase [Parasutterella
           excrementihominis YIT 11859]
 gi|302859248|gb|EFL82330.1| pyridine nucleotide-disulfide oxidoreductase [Burkholderiales
           bacterium 1_1_47]
 gi|329571762|gb|EGG53442.1| pyridine nucleotide-disulfide oxidoreductase [Parasutterella
           excrementihominis YIT 11859]
          Length = 661

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 287 GSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           G++    P G     ++ ++    + + +     +V     +++ A+ +     K  SCG
Sbjct: 17  GTADYKEPEGLDLKNLLQFNNGNPVMTFISHRGFLVFHPHANLLFAMNKYYSTVKDNSCG 76

Query: 347 QCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
           +CTPCR G+  + + +E+ ++G       + L ++++ +   + C +G  +   +   IK
Sbjct: 77  KCTPCRSGSIIISQALEKALRG--DPINWENLLDIARMMRNTSFCGVGQTSPVALIEAIK 134

Query: 407 NFR 409
            F 
Sbjct: 135 AFP 137


>gi|210615190|ref|ZP_03290484.1| hypothetical protein CLONEX_02700 [Clostridium nexile DSM 1787]
 gi|210150407|gb|EEA81416.1| hypothetical protein CLONEX_02700 [Clostridium nexile DSM 1787]
          Length = 331

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 90/271 (33%), Gaps = 53/271 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+K     +       Y+++NA E EPG   +   +  E   +I G   +     A 
Sbjct: 95  FPTGVKLGTDLE-----GGYILINAAECEPGLRHNIQQIEEECDKVIRGVKYSMEISNAA 149

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A   ++ +  +  ++L+ A+ +  A               I +H     Y  GEE A++
Sbjct: 150 KAIFAIKKKNTKAVQTLKEALKDEPA---------------ISIHLLPDIYPMGEERAVV 194

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G +  P   P            + V NVE++A V   +      +       ++  
Sbjct: 195 RECLGIELDPTQLPS--------AAKSIVINVETLARVAEAIDERKPCF-------SKNL 239

Query: 240 KLFSISGHVNYPCTV-EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
            +       N P    +  +  + +ELIE+  G      +    +I GG           
Sbjct: 240 TVIGKLNGGNQPHVFMDVPVGTSVEELIERAGGIDGVYGE----IIMGGPFTG---KATT 292

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
             A +             T  +IV     D+
Sbjct: 293 FDAPITKT----------TGGIIVTMEFPDL 313


>gi|317496429|ref|ZP_07954781.1| respiratory-chain NADH dehydrogenase 51 kDa subunit protein
           [Gemella moribillum M424]
 gi|316913444|gb|EFV34938.1| respiratory-chain NADH dehydrogenase 51 kDa subunit protein
           [Gemella moribillum M424]
          Length = 395

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 94/271 (34%), Gaps = 48/271 (17%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           D      +  ++K      D  + ++K +G+ G GGAGF TG+K+S           YL+
Sbjct: 68  DKEQTDDYVRLEK-----TDDYLQKIKDAGIVGVGGAGFPTGIKFST-----QIPGGYLI 117

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
            NA E EP    +   M  +P  L+ G        GA   +I               A+ 
Sbjct: 118 ANAAECEPILGHNVKFMEEQPEVLVRGMKYIMELTGAKEGYI---------------AIK 162

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
             Y   LL        + +I +      Y  G+E  ++    G   QP  + P  AN   
Sbjct: 163 TKYRKALLALGKACKDEPNISIKILPNMYPAGDERVIVRETLGVILQP-GQLPLEANA-- 219

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV-EESMSI 260
                 ++NVE+I  V   +                  K  ++ G V  P    +  + +
Sbjct: 220 -----IISNVETIKHVVNAIEEDKPLID----------KDLTVGGRVQNPSIFLDVPIGL 264

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
                IE+  G I    +    ++ GG    
Sbjct: 265 PISVFIERAGGYINPHGE----IVRGGPFTG 291


>gi|320198694|gb|EFW73294.1| Cob(III)alamin reductase @ Cob(II)alamin reductase [Escherichia
           coli EC4100B]
          Length = 447

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 104/326 (31%), Gaps = 62/326 (19%)

Query: 36  LEKGRDWIINE-VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           L    D  I E V+A+G+ G GGAGF T +K          R    +VNA E EP    D
Sbjct: 5   LTSCDDQTIRERVQAAGVVGAGGAGFPTHIKLQA-------RVDTFLVNAAECEPMLKVD 57

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
           + +M  +   L+ G   A  A GA    I ++ ++       Q A++             
Sbjct: 58  QQLMAQQASRLLRGVHYAMKATGASSGIIALKEKY-------QRAINALTPL-------- 102

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                DI +H     Y  G+E   +    G++  P   P     V             + 
Sbjct: 103 --LPPDIRLHILPDVYPAGDEVLTIWMATGRRVPPAALPVSVGVV---VNNVQTVLNITR 157

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           AV                       +  +++G V  P TV   + ++  E++    G   
Sbjct: 158 AVEQQY---------------PVTRRTLTVNGAVAKPITVTVPIGMSLREVLALAGGATV 202

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                    I GG  +  L         +             T  ++V+  S  +I+   
Sbjct: 203 DAP----GFINGGPMMGSLITS--LDTPVSKT----------TGGLLVLPNSHSLIQRRL 246

Query: 335 ---RLSVFYKHESCGQCTPCREGTGW 357
              R  +      C QC  C +    
Sbjct: 247 QNDRSVLAVAKTVCEQCRLCTDLCPR 272


>gi|157159374|ref|YP_001463354.1| propanediol utilization protein PduS [Escherichia coli E24377A]
 gi|157081404|gb|ABV21112.1| propanediol utilization protein PduS [Escherichia coli E24377A]
          Length = 447

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 104/326 (31%), Gaps = 62/326 (19%)

Query: 36  LEKGRDWIINE-VKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKD 94
           L    D  I E V+A+G+ G GGAGF T +K          R    +VNA E EP    D
Sbjct: 5   LTSCDDQTIRERVQAAGVVGAGGAGFPTHIKLQA-------RVDTFLVNAAECEPMLKVD 57

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
           + +M  +   L+ G   A  A GA    I ++ ++       Q A++             
Sbjct: 58  QQLMAQQASRLLRGVHYAMKATGASSGIIALKEKY-------QRAINALTPL-------- 102

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                DI +H     Y  G+E   +    G++  P   P     V             + 
Sbjct: 103 --LPPDIRLHILPDVYPAGDEVLTIWMATGRRVPPAALPVSVGVV---VNNVQTVLNITR 157

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           AV                       +  +++G V  P TV   + ++  E++    G   
Sbjct: 158 AVEQQY---------------PVTRRTLTVNGAVAKPITVTVPIGMSLREVLALAGGATV 202

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
                    I GG  +  L         +             T  ++V+  S  +I+   
Sbjct: 203 DAP----GFINGGPMMGSLITS--LDTPVSKT----------TGGLLVLPNSHSLIQRRM 246

Query: 335 ---RLSVFYKHESCGQCTPCREGTGW 357
              R  +      C QC  C +    
Sbjct: 247 QNDRSVLAVAKTVCEQCRLCTDLCPR 272


>gi|329768440|ref|ZP_08259931.1| hypothetical protein HMPREF0428_01628 [Gemella haemolysans M341]
 gi|328836773|gb|EGF86423.1| hypothetical protein HMPREF0428_01628 [Gemella haemolysans M341]
          Length = 395

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 92/271 (33%), Gaps = 48/271 (17%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           D      +  ++K      D  + ++K +G+ G GGAGF TG+K S           Y++
Sbjct: 68  DKEQTDDYVRLEK-----TDDKLQKIKDAGIVGVGGAGFPTGIKLS-----AQIPGGYVI 117

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
            NA E EP    +   M   P  L+ G        GA   +I               A+ 
Sbjct: 118 ANAAECEPILGHNVKFMEDHPEVLVRGLKYIVELTGAKEGYI---------------AIK 162

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
             Y   LL        + +I +      Y  G+E  ++    G   +P  + P  AN   
Sbjct: 163 TKYRKALLALGKVCKNEPNISIKILPNMYPAGDERVIVRETLGVILKP-GQLPLEANA-- 219

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV-EESMSI 260
                 ++NVE+I  +   +                  K  ++ G V  P    +  + +
Sbjct: 220 -----IISNVETIKRIVEAIEEDKPLID----------KDITVGGRVQNPGIFLDVPIGL 264

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
                IEK  G I    +    ++ GG    
Sbjct: 265 PISVFIEKAGGYINPHGE----IVRGGPFTG 291


>gi|257463022|ref|ZP_05627425.1| hydrogenase, Fe-only [Fusobacterium sp. D12]
          Length = 652

 Score = 80.8 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 21/193 (10%)

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            G K+  I+G V  P  VE    +T  ++I    G          A   G      L + 
Sbjct: 32  TGKKVI-IAGRVEKPGVVEIEDGMTLQDVITAVGG--IKNKKQFKAAQFGIPFGGFLTSK 88

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY------KHESCGQCTP 350
            +    +D+    E         +I++     II        F       K E       
Sbjct: 89  HLEH-PIDFSLFPE-----NERNIIILSEEDCIISFSKFYIEFLQDMISEKEEKYAAYHQ 142

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRP 410
                  + R+++R+ KG +  R++ LL  +S  I+ +            +  +I  F  
Sbjct: 143 VTHEVERIGRILDRISKGKSNMRDVYLLRYLSDIIKTK-----LQQKHNMVLEIIDTFYD 197

Query: 411 LIEERIDQYHRCN 423
            IEE ++   +C 
Sbjct: 198 EIEEHVEDL-KCP 209


>gi|153854955|ref|ZP_01996168.1| hypothetical protein DORLON_02174 [Dorea longicatena DSM 13814]
 gi|149752452|gb|EDM62383.1| hypothetical protein DORLON_02174 [Dorea longicatena DSM 13814]
          Length = 471

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 97/264 (36%), Gaps = 46/264 (17%)

Query: 44  INEVKASGLRGRGGAGFSTGMKWSF-----------------MPKVCSDRPHYLVVNADE 86
           ++ VKA+G+ G GGAGF TG+K +                  +PK       Y++VNA E
Sbjct: 87  LDLVKAAGIVGMGGAGFPTGVKLNINLEETPMGELDPEINPELPKDFKLDCGYILVNAAE 146

Query: 87  SEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYAS 146
            EPG   +   +  +   LI G   +     A  A I ++ +  +  + LQ A++     
Sbjct: 147 CEPGLEHNTRQIEEQSDKLIRGIKYSMEITHAKKAIIAIKKKHHKAIKVLQKALEN---- 202

Query: 147 GLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
                      + DI +H  A  Y  GEE A++    G       + P  A         
Sbjct: 203 -----------EPDIKMHLMADIYPMGEERAVVRECLG-VLLTTTQLPSAARS------- 243

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELI 266
            V NVE++  +   +       S       +      ++G        +  + ++  E+I
Sbjct: 244 VVINVETVCKIAEAVDEKKPCISKNMTVRGK------LNGGNEAHVFFDVPVGVSVGEMI 297

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSV 290
           EK  G      + ++     G S 
Sbjct: 298 EKAGGIDGKYGEIIMGGAFTGKST 321


>gi|291549871|emb|CBL26133.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductases [Ruminococcus torques L2-14]
          Length = 610

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +          + +SCG+CTPCR G   +  ++  ++ G A    +DL+  +S++I  
Sbjct: 35  CPVDMTRAFIEMCQTQSCGKCTPCRVGLWQLKNLLTDVMNGTATMETLDLIDTLSESIRE 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
            + C +G  A   +   +++ R   EE + Q  RC 
Sbjct: 95  GSDCPIGYEAGAMVHKSLRDCREDYEEHVRQ-GRCT 129


>gi|291617337|ref|YP_003520079.1| RnfC [Pantoea ananatis LMG 20103]
 gi|291152367|gb|ADD76951.1| RnfC [Pantoea ananatis LMG 20103]
          Length = 667

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 106/355 (29%), Gaps = 80/355 (22%)

Query: 8   IFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           IF    G         L D                 R  I+  +  +G+ G GGAGF T 
Sbjct: 108 IFLTPDGEDRWMPLEPLPDYRQH------------ERAAILKRIHDAGIAGLGGAGFPTA 155

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            K     +        L++NA E EP    D  +M+     ++EG  I ++ + A    I
Sbjct: 156 TKLKGGLRG----VKTLIINAAECEPYITADDRLMQDYAAEVLEGSRILAWVLQADRVLI 211

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
            +         +L+ A+                   D+ +      Y  G    L + L 
Sbjct: 212 GIEDNKPEAIAALKQALGGER---------------DLQIRVIPTKYPSGGAKQLTKILT 256

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G +           ++G+      + NV +   V   +  G               ++ +
Sbjct: 257 GMEV---PHGGRSTDIGV-----LMQNVGTAWAVKRAIING----------EPITERVVT 298

Query: 244 ISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGA 301
           ++G  +  P  V   +      L+ +              VI GG  +   LP+  +   
Sbjct: 299 LTGEAIAQPRNVWSRLGTPISHLLHQVG----FHPSPRQMVIMGGPLMGFTLPSLDVPVV 354

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    L    + +G                        + +SC +C+ C +   
Sbjct: 355 KITNCILAPSSTEMGNDE---------------------QEQSCIRCSACADACP 388


>gi|255526909|ref|ZP_05393805.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
 gi|255509415|gb|EET85759.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium carboxidivorans P7]
          Length = 435

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 98/277 (35%), Gaps = 53/277 (19%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           L+D +    +  + +      + II+ V  +G+ G GGAGF T +K             Y
Sbjct: 62  LADEIQTEDYVKIKEC-----ESIIDTVYEAGIVGAGGAGFPTHIKLK-----AEIPDGY 111

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           ++ N  E EP    +  ++  +P  ++ G   A  A G+  A+I ++ +     +SL+  
Sbjct: 112 IIANCVECEPVLHHNIKMIEEKPELVVNGIRYAMKATGSKKAYIAIKAKHPEAIQSLEKC 171

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           ++              G D DI +      Y  GEE A++  + GK  +P   P      
Sbjct: 172 LN--------------GSD-DIEIKKLRDMYPMGEERAVIHEIFGKWLEPTQLP------ 210

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGRENNRGTKLFSISGHVNYPCTV- 254
                   V N E++A +   +              G+  +              P    
Sbjct: 211 --LEAKCVVLNGETLANITRAVEDKKPVIDKDITVIGKLKSG-----------KEPNVFS 257

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +  +  +   LIEK  G      +    ++ GG    
Sbjct: 258 QVPVGTSMKSLIEKCGGIDGEYGE----IVIGGPYTG 290


>gi|311279054|ref|YP_003941285.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Enterobacter cloacae SCF1]
 gi|308748249|gb|ADO48001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Enterobacter cloacae SCF1]
          Length = 451

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 101/333 (30%), Gaps = 68/333 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          +    +VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 34  FPTHIKLQA-------QVDTFLVNAAECEPLLKVDQQLMVQQADRLIRGVQYAMKATGAS 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++     +L   +                    I +H     Y  G+E   +
Sbjct: 87  EGIIALKEKYQPAIHALTPLLPTA-----------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 130 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + ++  E++    G            I GG  +  L A    
Sbjct: 172 RTLTVNGAVAKPLTLTVPVGMSLREVLALAGGTTVDSP----GFINGGPMMGSLIAS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCRE--- 353
            + +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 226 DSPVTKT----------TGGLLVLPGSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCP 275

Query: 354 ----GTGWMMRVMERLVKGIAQKREIDLLYEVS 382
               G      ++ R V          LL  ++
Sbjct: 276 RHLIGHALSPHLLVRAVNFQHTATPQMLLSALT 308


>gi|189423729|ref|YP_001950906.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter lovleyi SZ]
 gi|189419988|gb|ACD94386.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Geobacter lovleyi SZ]
          Length = 672

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 294 PAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCR 352
           PA       + +DG + + + +G   +IV D+  D+           +    CG+CTP +
Sbjct: 23  PAAASYRLPVAFDGQQPLRAFMGWDGIIVFDKDVDVPAMAAEYMQRVQTMYCCGKCTPGK 82

Query: 353 EGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
           +GT  +  ++++++KG A+  ++D + +++  ++    C L  ++  P+   +  +R   
Sbjct: 83  KGTKVLADLLQKVIKGEAKPGDLDQVADLNALLQ-NCKCTLCPSSTKPVLDAVTYYRADF 141

Query: 413 EE 414
           E 
Sbjct: 142 EA 143


>gi|168038274|ref|XP_001771626.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162677065|gb|EDQ63540.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 195

 Score = 80.4 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/66 (66%), Positives = 54/66 (81%), Gaps = 1/66 (1%)

Query: 147 GLLGSNS-KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCP 205
           GL G+N+   G+ +D+++HHGA AYICGE+T  LESLEGK+ +PRLKPPFPAN GLYG P
Sbjct: 42  GLPGNNACGSGHALDVLIHHGACAYICGEDTTPLESLEGKQNKPRLKPPFPANAGLYGFP 101

Query: 206 TTVNNV 211
           TTV NV
Sbjct: 102 TTVTNV 107



 Score = 44.6 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 375 IDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF 408
           + L  E++   E   ICAL DAA WP+QGLI++F
Sbjct: 124 LSLKQEITVKNERSAICALIDAAVWPVQGLIRHF 157


>gi|283832577|ref|ZP_06352318.1| PduS protein [Citrobacter youngae ATCC 29220]
 gi|291072246|gb|EFE10355.1| PduS protein [Citrobacter youngae ATCC 29220]
          Length = 451

 Score = 80.4 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVDTFLVNAAECEPMLKVDQQLMSVQADRLIRGVQYAMTATGAS 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ +       A+     +G             I +H     Y  G+E   +
Sbjct: 87  AGIIALKEKYQKAI----NALTPLLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P   P     V        V  V +IA V                      
Sbjct: 130 WMATGRRVPPAALPVSVGVV-----VNNVQTVLNIARVVEQQY-------------PVTR 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVAKPVTLSVPVGMSLREVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DTPVSKT----------TGGLLVLPKSHALIQRRMQDERTVLSVAKTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|166031626|ref|ZP_02234455.1| hypothetical protein DORFOR_01326 [Dorea formicigenerans ATCC
           27755]
 gi|166028603|gb|EDR47360.1| hypothetical protein DORFOR_01326 [Dorea formicigenerans ATCC
           27755]
          Length = 611

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V V    +  I     +     +++CG+C PCR+G   + R+M++++ G A ++ +D + 
Sbjct: 27  VEVYPPGSCPITMQISMLRTAANQTCGKCVPCRDGLPLVARLMQKVLDGRATEKTLDNIR 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            ++  I     CA+G  AA  +   +  F    +  I+   +C
Sbjct: 87  MMATMIRSSADCAIGWNAADEVLKGLDLFADEYQSHIEN-KKC 128


>gi|291288394|ref|YP_003505210.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885554|gb|ADD69254.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 657

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 296 GQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREG 354
                   +Y G K + + +     +V D   D++ A+         E  CG+C P R G
Sbjct: 26  ESPFKTPDEYRG-KPLKALINWDGFLVYDEGVDMLAALANYMEEISSEGCCGRCFPGRVG 84

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           T  +   + ++  G   + EI+   +++++I     C +   +  P++  ++ FR  +  
Sbjct: 85  TKLLAEQLMKIRSGETSEEEINKAVDMAESIFNSAKCTVAPTSTVPVRAFLREFRDQVTA 144

Query: 415 RI----DQYHR 421
           ++     +YH+
Sbjct: 145 QVAKGTTEYHK 155


>gi|288574478|ref|ZP_06392835.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570219|gb|EFC91776.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 442

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 118/357 (33%), Gaps = 74/357 (20%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
                +++++ A+G+ G GGAGF T +K S      +D  H  ++N  E EP    +  +
Sbjct: 1   MTAPNLLDKILAAGVVGAGGAGFPTHVKLS------ADGVHTYLINGAECEPLLRNNMAL 54

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
              +   L+E        +GA      V+ + + + + L+ A                G 
Sbjct: 55  FDEKTPFLVETAHKIGSILGAERVTFCVKRKHVFQIDKLRLA----------------GA 98

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D    V      Y  G+E  +++   G       +   P  VG+      VNNVE++  +
Sbjct: 99  D----VFEMDDYYPAGDEIIMIQEATGLTV---PEGGLPLQVGV-----VVNNVETLYNL 146

Query: 218 PTILRRGASWYSGFGRENNRGTKLF-SISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +            E++  T+ + ++ G V  P      +     EL+    G     
Sbjct: 147 GRAV------------EDSPVTRTWVTVGGAVANPGVWSVPIGTIASELVALAGGETISN 194

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AI 333
                  + GG                 Y    +   G  +  ++V+   + +++     
Sbjct: 195 P----VYVDGGPMTG------------TYRKSAKFPLGKRSNGILVVPSDSALVRYETMP 238

Query: 334 WRLSVFYKHESCGQCTPCREGTGWM--------MRVMERLVKGIAQKREIDLLYEVS 382
               V     +C QCT C                +VM  +     +  EI  +  + 
Sbjct: 239 VETMVRQARYACCQCTQCTMVCSRNLIGYELEPHKVMRAMAYPEQRTPEILKMAMLC 295


>gi|317047961|ref|YP_004115609.1| electron transport complex, RnfABCDGE type subunit C [Pantoea sp.
           At-9b]
 gi|316949578|gb|ADU69053.1| electron transport complex, RnfABCDGE type, C subunit [Pantoea sp.
           At-9b]
          Length = 758

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 110/355 (30%), Gaps = 80/355 (22%)

Query: 8   IFTNLYGLQGKS-LS---DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           IF    G    + L    D  +              R+ ++  +  +G+ G GGAGF T 
Sbjct: 109 IFLTADGEDRWTTLDPQPDYRA------------LPREEVVKRIHDAGIAGLGGAGFPTA 156

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            K     +        L++NA E EP    D  +M+     ++EGC I ++ + A    I
Sbjct: 157 TKLRGGLRG----VKTLIINAAECEPYITADDRLMQDCAAEVLEGCRILAWVLQAERVLI 212

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
            V         +L+ A+                   D+ +      Y  G    L + L 
Sbjct: 213 GVEDNKPAAIAALKQALAGER---------------DLQLRVIPTKYPSGGAKQLTKILT 257

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G +           ++G+      + NV +   V   +  G               ++ +
Sbjct: 258 GLEV---PHGGRSTDIGV-----LMQNVGTAWAVKRAIVDG----------EPITERVVT 299

Query: 244 ISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGA 301
           ++G  +  P  V   +      L+                VI GG  +   LP+  +   
Sbjct: 300 LTGEAITQPRNVWGRLGTPVSHLLHHAG----FNPSARQMVIMGGPLMGFTLPSLDVPVV 355

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
            +    L    S +G+                       + +SC +C+ C +   
Sbjct: 356 KITNCILAPSASEMGSNP---------------------EEQSCIRCSACADACP 389


>gi|322421177|ref|YP_004200400.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Geobacter sp. M18]
 gi|320127564|gb|ADW15124.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Geobacter sp. M18]
          Length = 670

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 2/127 (1%)

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCRE 353
                   + YDG + + + +G   +++ ++  DI           + +  CG+CTP ++
Sbjct: 23  KELSFKLPVTYDGERPLSAFIGWDGIVLYNKDVDIPAMAAEYMKRVQTKYVCGKCTPGKK 82

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIE 413
           GT  +M  +  +++G  ++ ++D + +V   +E    C L  +++ P+   + +FR    
Sbjct: 83  GTRVIMDALAGIIEGRGKEEDLDTILDVGSVLE-HCKCTLCPSSSVPVIDAVTHFRDAFV 141

Query: 414 ERIDQYH 420
             I    
Sbjct: 142 NYIRGAK 148


>gi|134301099|ref|YP_001114595.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134053799|gb|ABO51770.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Desulfotomaculum reducens MI-1]
          Length = 445

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 118/346 (34%), Gaps = 62/346 (17%)

Query: 42  WIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHE 101
            ++N +K +G+ G GGAGF T  K +   +       Y+++N  E EP    D+ +M   
Sbjct: 2   DLLNIIKDAGIIGAGGAGFPTHAKLTSKAE-------YILLNGAECEPLLRVDQQLMAQF 54

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDI 161
           P  +I G       I A  A I ++G+       L+  +     +              +
Sbjct: 55  PDEIIRGLEATGRYIEARKAIIGIKGKHKEVVVLLRERIAALGLANY------------M 102

Query: 162 IVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTIL 221
            V      Y  G+E  L+  L  K+  P  +   P  VG       V N E+   +   +
Sbjct: 103 EVMELRDMYPAGDEQVLVHELT-KRVVP--EASIPLKVG-----CVVINSETALNIYHAM 154

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
                                +++G + +  TV+  + +   + + + CG       +  
Sbjct: 155 A-----------GKPVTETYLTVAGDIPHRMTVKVPVGVAIRD-VFRQCG---VENLDDY 199

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
           AVI GG  +  +        +  Y   K  G  L      ++ + +  I+    +     
Sbjct: 200 AVIDGGPMMGSV-----MNNVDGYVTKKNKGYVLLKKDHFLIRKKSMGIEQARVIG---- 250

Query: 342 HESCGQCTPCREGTGWM--------MRVMERLVKGIAQKREIDLLY 379
             +C QC  C +              ++M  +        +++ L 
Sbjct: 251 KTACEQCRMCTDLCPRYLLGHNIQPHKLMRAI---NYNLEDLNELK 293


>gi|284007515|emb|CBA73011.1| Electron transport complex protein rnfC [Arsenophonus nasoniae]
          Length = 586

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 112/358 (31%), Gaps = 75/358 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     K  +   + L++NA E EP    D  +M+     +IEG +I    +   
Sbjct: 154 FPTATKL----KNGNKLINTLIINAAECEPYITADDRLMQEHADEIIEGILILIHILKPK 209

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+              LG    I +      Y  G    L 
Sbjct: 210 EVLIGIEDNKPAAIAALKEAL--------------LGQQAIIKLRVIPTKYPSGGAKQLT 255

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          + +G+      + NV ++  +   +  G               
Sbjct: 256 KILTGKEI---PHGVHSSFIGI-----LMQNVGTVFAIKRAIIDGEPLI----------E 297

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  +  P      +    + L+++          +   VI GG  +        
Sbjct: 298 RVVTLTGAAIQNPGNYWVRLGTPVNFLLQQVG----MVPQSEQMVIMGGPLMGFTLPDL- 352

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-- 356
                             T  ++ +     ++  +  +      E+C +C  C +     
Sbjct: 353 ------------------TTPIVKISNCI-LVPTLAEIGKPAIEEACIRCGLCTQACPAN 393

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
            + + +    +G   ++     Y +S  IE    C    A A+       L++ +R  
Sbjct: 394 LLPQQLYWFSRGQEHEK--AEKYNLSDCIE----CG---ACAYVCPSNIPLVQYYRQE 442


>gi|290511185|ref|ZP_06550554.1| Cob(III)alamin / Cob(II)alamin reductase [Klebsiella sp. 1_1_55]
 gi|289776178|gb|EFD84177.1| Cob(III)alamin / Cob(II)alamin reductase [Klebsiella sp. 1_1_55]
          Length = 450

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 96/301 (31%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R   ++VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 33  FPTHIKLQA-------RVDTVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMTATGAR 85

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++        AA+                      +H     Y  G+E   +
Sbjct: 86  EGIIALKAKYTPAI----AALTPRLPEWA-------------RLHILPDVYPAGDEVLTI 128

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P   P     V        VNNV+++  +   + +G               
Sbjct: 129 WLATGRRVPPAALPVSVGVV--------VNNVQTVLNIARAVEQGYPVTR---------- 170

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V+ P T+   + ++  E++    G            I GG  +  L      
Sbjct: 171 RTLTVNGAVSRPLTLTVPLGMSLREVLALAGGATVAEP----GFINGGPMMGSLMTS--L 224

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  +  +I+      R  +      C QC  C +   
Sbjct: 225 ETPVTKT----------TGGLLVLPGNHPLIQRRRQDERTLLAIARTVCEQCRLCTDLCP 274

Query: 357 W 357
            
Sbjct: 275 R 275


>gi|227326453|ref|ZP_03830477.1| electron transport complex protein RnfC [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 684

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 96/317 (30%), Gaps = 64/317 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +        L++N  E EP    D  +M+     +I+G  I SF +   
Sbjct: 152 FPTAAKLQGGMRG----IETLIINGAECEPYITADDRLMQECAEEIIQGVEILSFLLQPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+               G   D+ +      Y  G    L 
Sbjct: 208 RILIGIEDNKPEAISALRLAL---------------GKRSDMQLRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          A +G+      + NV +   +   +  G               
Sbjct: 253 KILTGKEV---PFGKHSAAIGV-----LMQNVGTAFAIKRAVIDGEPLT----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  +  P  V   +      L+++  GG          V+ GG  +        
Sbjct: 295 RVVTLTGEALRQPGNVWARLGTPVRHLLKQ--GGFHVNKQP--MVVMGGPLMGFTLPSLD 350

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-- 356
              +   + L                  T++           + +SC +C+ C +     
Sbjct: 351 VPIVKISNCLLA-------------PSHTEMEPVA-------EEQSCIRCSKCADACPAG 390

Query: 357 WMMRVMERLVKGIAQKR 373
            + + +    +G   ++
Sbjct: 391 LLPQQLYWFSRGQEHEK 407


>gi|229826588|ref|ZP_04452657.1| hypothetical protein GCWU000182_01963 [Abiotrophia defectiva ATCC
           49176]
 gi|229789458|gb|EEP25572.1| hypothetical protein GCWU000182_01963 [Abiotrophia defectiva ATCC
           49176]
          Length = 609

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G   +  +M  ++ G A    I L+ E +K+I  
Sbjct: 35  CPVDITRAFIEMCHAQTCGKCVPCRVGLLHLKHLMTTVLNGNATMDIIPLIEETAKSISE 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
              CA+G  AA  +   +   R   EE I +  RCN Q
Sbjct: 95  TADCAIGYEAANMVYKAVTTCRDDFEEHI-RNGRCNCQ 131


>gi|330836326|ref|YP_004410967.1| Glutamate synthase (NADPH) [Spirochaeta coccoides DSM 17374]
 gi|329748229|gb|AEC01585.1| Glutamate synthase (NADPH) [Spirochaeta coccoides DSM 17374]
          Length = 615

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           ++        I          + ++CG+C PCR G   +  ++E ++        I  L 
Sbjct: 27  IVASPPGLCPIDMSASFLKMCRAQTCGKCVPCRVGLVQLELMLEAILDNHGDMAMIGELE 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
             ++ I   + CA+G  AA  +   ++  R    E I + HRC+
Sbjct: 87  HTAQVIAESSDCAIGYEAASMVLKSVRGCREDFIEHI-RNHRCS 129


>gi|226322996|ref|ZP_03798514.1| hypothetical protein COPCOM_00768 [Coprococcus comes ATCC 27758]
 gi|225208563|gb|EEG90917.1| hypothetical protein COPCOM_00768 [Coprococcus comes ATCC 27758]
          Length = 442

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 81/238 (34%), Gaps = 40/238 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F TG+K     +       Y++VNA E EPG   +   +  +   +I G         A 
Sbjct: 95  FPTGVKLGTDLQ-----GGYILVNAAECEPGLRHNIQQLEDDCAKVIRGVKHCMEISNAS 149

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A   ++ +  +  ++L+ A+ +  A               I +H     Y  GEE A++
Sbjct: 150 KAIFAIKKKNEKAVKALREALKDEEA---------------ITIHLLPDIYPMGEERAVV 194

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G +     + P  AN         V NVE++A V   +      +       ++  
Sbjct: 195 RECLGIELN-TTQLPSAANA-------IVCNVETLARVAEAIEERKPCF-------SKNL 239

Query: 240 KLFSISGHVNYPCTV-EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
            +       N P    +  +  +  E+IE+  G      +    +I GG         
Sbjct: 240 TVIGKINGGNEPHVFMDVPVGTSVGEMIERAGGIDGVYGE----IIMGGPFTGHATTE 293


>gi|327393782|dbj|BAK11204.1| electron transport complex protein RnfC [Pantoea ananatis AJ13355]
          Length = 814

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 124/415 (29%), Gaps = 94/415 (22%)

Query: 8   IFTNLYGLQGK----SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG 63
           IF    G         L D                 R  I+  +  +G+ G GGAGF T 
Sbjct: 108 IFLTPDGEDRWMPLEPLPDYRQH------------ERAAILKRIHDAGIAGLGGAGFPTA 155

Query: 64  MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFI 123
            K     +        L++NA E EP    D  +M+     ++EG  I ++ + A    I
Sbjct: 156 TKLKGGLRG----VKTLIINAAECEPYITADDRLMQDYAAEVLEGSRILAWVLQADRVLI 211

Query: 124 YVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLE 183
            +         +L+ A+                   D+ +      Y  G    L + L 
Sbjct: 212 GIEDNKPEAIAALKQALGGER---------------DLQIRVIPTKYPSGGAKQLTKILT 256

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFS 243
           G +            +G+      + NV +   V   +  G               ++ +
Sbjct: 257 GMEV---PHGGRSTAIGV-----LMQNVGTAWAVKRAIING----------EPITERVVT 298

Query: 244 ISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGA 301
           ++G  +  P  V   +      L+ +              VI GG  +   LP+  +   
Sbjct: 299 LTGEAIAQPRNVWSRLGTPISHLLHQVG----FHPSPRQMVIMGGPLMGFTLPSLDVPVV 354

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMM 359
            +    L    + +G                        + +SC +C+ C +      + 
Sbjct: 355 KITNCILAPSSTEMGNDE---------------------QEQSCIRCSACADACPAKLLP 393

Query: 360 RVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG---LIKNFRPL 411
           + +    KG     +    + +   IE    C    A A+       L++ +R  
Sbjct: 394 QQLYWYSKGGDH--DKARAHHIDDCIE----CG---ACAYVCPSNIPLVQYYRQE 439


>gi|187778917|ref|ZP_02995390.1| hypothetical protein CLOSPO_02512 [Clostridium sporogenes ATCC
           15579]
 gi|187772542|gb|EDU36344.1| hypothetical protein CLOSPO_02512 [Clostridium sporogenes ATCC
           15579]
          Length = 426

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 84/237 (35%), Gaps = 39/237 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +    Y++ N  E EP    +  +  + P  +I+G   A  A  A 
Sbjct: 87  FPTHVKLK-----ANIPEGYIIANCAECEPTLHHNVYLAENNPELIIKGIKYAMKATNAK 141

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A+I ++G+  +  E L+  +                   +I +      Y  GEE AL+
Sbjct: 142 KAYIGIKGKRKKAIEVLKEHLKNEQ---------------NIQIKEVIDIYPSGEERALI 186

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G+   P  + P  AN         V NVE++A +   +               +  
Sbjct: 187 HFIFGEWLAP-TQIPIEAN-------CVVLNVETLANITRAVEERKPVIDKDITLMGKLK 238

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAG 296
           K   I  HV     ++E +  +  ++IE   G      +    +I GG     LP  
Sbjct: 239 K--GIGPHV----FLQEHIGKSMKDMIETCGGIDGQYGE----IIIGGPHTG-LPED 284


>gi|227111414|ref|ZP_03825070.1| electron transport complex protein RnfC [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 753

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 96/317 (30%), Gaps = 64/317 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +        L++N  E EP    D  +M+     +I+G  I SF +   
Sbjct: 152 FPTAAKLQGGMRG----IETLIINGAECEPYITADDRLMQECAEEIIQGVEILSFLLQPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+               G   D+ +      Y  G    L 
Sbjct: 208 RILIGIEDNKPEAISALRLAL---------------GNRSDMQLRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          A +G+      + NV +   +   +  G               
Sbjct: 253 KILTGKEV---PFGKHSAAIGV-----LMQNVGTAFAIKRAVIDGEPLT----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  +  P  V   +      L+++  GG          V+ GG  +        
Sbjct: 295 RVVTLTGEALRQPGNVWARLGTPVRHLLKQ--GGFHVNKQP--MVVMGGPLMGFTLPSLD 350

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-- 356
              +   + L                  T++           + +SC +C+ C +     
Sbjct: 351 VPIVKISNCLLA-------------PSHTEMEPVA-------EEQSCIRCSKCADACPAG 390

Query: 357 WMMRVMERLVKGIAQKR 373
            + + +    +G   ++
Sbjct: 391 LLPQQLYWFSRGQEHEK 407


>gi|171854200|emb|CAM57298.1| cobalamin reductase [Citrobacter freundii]
          Length = 451

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 89/301 (29%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVDTFLVNAAECEPMLKVDQQLMAVQAERLIRGVQYAMTATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++ R       A+     +G             I +H     Y  G+E   +
Sbjct: 87  AGIIALKEKYQRAI----NALTPLLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P   P     V             + AV                       
Sbjct: 130 WMATGRRVPPAALPVSVGVV---VNNVQTVLNITRAVEQQY---------------PVTR 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + ++  E++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVARPITLTVPIGMSLREVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DTPVSKT----------TGGLLVLPKSHALIQRRMQDERTVLSVAKTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|266618904|ref|ZP_06111842.1| putative electron transport protein [Clostridium botulinum Bf]
 gi|263528668|gb|EEZ28377.1| putative electron transport protein [Clostridium botulinum Bf]
          Length = 372

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 72/237 (30%), Gaps = 48/237 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++ N  E EP    +  ++   P  +I G   A  A  + 
Sbjct: 97  FPTHIKLKADNKD-----GYIIANCVECEPALHHNMKVIEETPELIINGIKHAMKATNSK 151

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++ +  +    L+ ++                   +I +      Y  GEE A++
Sbjct: 152 KGYIAIKAKHEKAVRVLEESLKNIS---------------NIELKLLKDLYPMGEERAII 196

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG----FGREN 235
            ++  K       P              V N E++A +   +  G           G+  
Sbjct: 197 NAIFDKWLDVTELPI--------AAKCIVMNAETLANITRAVEEGKPVIDKDITVIGKLK 248

Query: 236 NRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           +            N P       +     +LIEK  G      +    ++ GG    
Sbjct: 249 SG-----------NKPNVFLQVPVGTPVKDLIEKSGGIDGEYGE----LVIGGPYTG 290


>gi|167745462|ref|ZP_02417589.1| hypothetical protein ANACAC_00153 [Anaerostipes caccae DSM 14662]
 gi|167655183|gb|EDR99312.1| hypothetical protein ANACAC_00153 [Anaerostipes caccae DSM 14662]
          Length = 610

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
                 +            ++CG+C PCR G G +  ++  ++ G A    + L+ + ++
Sbjct: 31  PPGICPVDMSRAFLELCHAQTCGKCVPCRIGLGQLKNLINDVLDGKATIETLGLIRDTAQ 90

Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +I     CA+G  AA  +   +  FR    E I  Y+RC
Sbjct: 91  SIMDSADCAIGYEAANMVYKGVIGFRDDYLEHIM-YNRC 128


>gi|157145052|ref|YP_001452371.1| hypothetical protein CKO_00783 [Citrobacter koseri ATCC BAA-895]
 gi|157082257|gb|ABV11935.1| hypothetical protein CKO_00783 [Citrobacter koseri ATCC BAA-895]
          Length = 451

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 97/301 (32%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K          +    +VNA E EP    D+ +M  +P  LI G   A  A GA 
Sbjct: 34  FPAHVKLQA-------QVEIFLVNAAECEPMLKVDQQLMAQQPARLIRGVQYAMKATGAR 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++    E+L         + LL S         I +H     Y  G+E   +
Sbjct: 87  EGIIALKEKYRDAIEAL---------TPLLPS--------SIRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 130 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  +++    G           +I GG  +  L      
Sbjct: 172 RTLTVNGAVARPLTVTVPVGMSLRDVLALAGGATVDDP----GLINGGPMMGSLVTS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
            + +             T  ++V+ ++  +I+      R  +      C QC  C +   
Sbjct: 226 DSPVTKT----------TGGLLVLPKNHPLIQRRMQDERTVLSVAKTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|317472986|ref|ZP_07932289.1| pyridine nucleotide-disulfide oxidoreductase [Anaerostipes sp.
           3_2_56FAA]
 gi|316899531|gb|EFV21542.1| pyridine nucleotide-disulfide oxidoreductase [Anaerostipes sp.
           3_2_56FAA]
          Length = 610

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
                 +            ++CG+C PCR G G +  ++  ++ G A    + L+ + ++
Sbjct: 31  PPGICPVDMSRAFLELCHAQTCGKCVPCRIGLGQLKNLINDVLDGKATIETLGLIRDTAQ 90

Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           +I     CA+G  AA  +   +  FR    E I  Y+RC
Sbjct: 91  SIMDSADCAIGYEAANMVYKGVIGFRDDYLEHIM-YNRC 128


>gi|288933735|ref|YP_003437794.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Klebsiella variicola At-22]
 gi|288888464|gb|ADC56782.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Klebsiella variicola At-22]
          Length = 450

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 96/303 (31%), Gaps = 58/303 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R   ++VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 33  FPTHIKLQA-------RVDTVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMTATGAR 85

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++        AA+                      +H     Y  G+E   +
Sbjct: 86  EGIIALKAKYTPAI----AALTPRLPEWA-------------RLHILPDVYPAGDEVLTI 128

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P   P     V        VNNV+++  +   + +G               
Sbjct: 129 WLATGRRVPPAALPVSVGVV--------VNNVQTVLNIARAVEQGYPVTR---------- 170

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + ++  E++    G            I GG  +  L      
Sbjct: 171 RTLTVNGAVARPLTLTVPLGMSLREVLALAGGATVAEP----GFINGGPMMGALITS--L 224

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
              +             T  ++V+  +  +I+   +        +   C  CR  T    
Sbjct: 225 ETPVTKT----------TGGLLVLPGNHPLIQRRRQDEHTLLAIARTVCEQCRLCTDLCP 274

Query: 360 RVM 362
           R +
Sbjct: 275 RHL 277


>gi|331663503|ref|ZP_08364413.1| propanediol utilization protein [Escherichia coli TA143]
 gi|331059302|gb|EGI31279.1| propanediol utilization protein [Escherichia coli TA143]
          Length = 447

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 93/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMAQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QLAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G        +   +  GS +  L      
Sbjct: 168 RTLTVNGAVAKPITVTVPIGMSLREVLALAGGATVDAPGFINGGLMMGSLITSL------ 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|239994544|ref|ZP_04715068.1| electron transport complex protein RnfC [Alteromonas macleodii ATCC
           27126]
          Length = 790

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 84/277 (30%), Gaps = 58/277 (20%)

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
           +N  E EP    D  +MR     + +G  I +  IG     + V        E+L  A  
Sbjct: 1   LNGIECEPYITSDDRLMREHAWQIRQGLDILTHLIGPKAIVVAVEDNKPETFEALNIACQ 60

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
           +                 D  V      Y  G E  L++ L G +  PR     PA+VG+
Sbjct: 61  DKK---------------DYRVVSVETKYPAGGEKQLIQVLTG-REVPRNG--LPADVGV 102

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSI 260
                 + NV +   +   +  G               ++ +++G  V  P      +  
Sbjct: 103 -----MMFNVGTCYAIADAILHG----------KPLIERVVTVTGEAVESPSNFRALLGT 147

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV 320
               L+++     +        VI GG  +                        L  A +
Sbjct: 148 PVSHLLDEANYNPKKQKVPK--VIMGGPMMGF---------------------TLSDATI 184

Query: 321 IVMDRSTD-IIKAIWRLSVFYKHESCGQCTPCREGTG 356
            V+  +   ++ A   L        C +C+ C +   
Sbjct: 185 PVVKTTNCLLVPAKKELVDDNAERPCIRCSACADACP 221


>gi|293410364|ref|ZP_06653940.1| Cob(III)alamin reductase @ Cob(II)alamin reductase [Escherichia
           coli B354]
 gi|291470832|gb|EFF13316.1| Cob(III)alamin reductase @ Cob(II)alamin reductase [Escherichia
           coli B354]
          Length = 447

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 93/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L+ G   A  A GA 
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMAQQASRLLRGVHYAMKATGAS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E   +
Sbjct: 83  SGIIALKEKY-------QLAINALTPL----------LPPDIRLHILPDVYPAGDEVLTI 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             +   +  P    P    V +    T +N   ++     + RR                
Sbjct: 126 -WMATGRSVPPAALPVNVGVVVNNVQTVLNIARAVEQQYPVTRRT--------------- 169

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
              +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 170 --LTVNGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRMQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|260769054|ref|ZP_05877988.1| electron transport complex protein RnfC [Vibrio furnissii CIP
           102972]
 gi|260617084|gb|EEX42269.1| electron transport complex protein RnfC [Vibrio furnissii CIP
           102972]
          Length = 875

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 103/324 (31%), Gaps = 68/324 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY--LVVNADESEPGTCKD 94
           +   + +I+ ++ +G+ G GGAGF T        K+ S        +VNA E EP    D
Sbjct: 130 QTQPEELIDIIRNAGIAGLGGAGFPTAK------KIQSGLSRVEIFIVNAAECEPYITAD 183

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
             +MR     +I+G  I    +      I V         +LQ A +             
Sbjct: 184 DALMREHAQEIIDGIGIVEHILQPKLTVIGVEDNKPEAIRALQLAAEG------------ 231

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                DI++      Y  G    L++ L   +          A++G+      V NV SI
Sbjct: 232 ----KDIVIRAIPTKYPSGGAKQLIKLLTDLEV---PAGKHSADIGV-----IVQNVGSI 279

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGI 273
             +   +  G               ++ +++G     P  V   +      L+++     
Sbjct: 280 QAIKRAVVDGEPLIR----------RVVTLTGKTFTQPRNVWVRLGTPVQSLLDEFGY-- 327

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                 L  +I GGS +                        L  A V ++  +  I+   
Sbjct: 328 -QADKKLPRLILGGSMMGF---------------------TLPHANVPIVKIANCILAPS 365

Query: 334 WR-LSVFYKHESCGQCTPCREGTG 356
              +       +C +C  C +   
Sbjct: 366 RNEIPQHDYEMACIRCGQCADACP 389


>gi|319940503|ref|ZP_08014848.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sutterella wadsworthensis 3_1_45B]
 gi|319806129|gb|EFW02878.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sutterella wadsworthensis 3_1_45B]
          Length = 622

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 43/100 (43%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +         +     L      ++CG+C PCR+G   + ++M R+V   AQ  ++  L 
Sbjct: 37  IEATPPGQCALALQLSLLEASALQTCGKCVPCRDGLPQLAKLMRRIVDCEAQPEDLGRLK 96

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
            +++ I   + CA+G  AA  +   +  F    +   ++ 
Sbjct: 97  TLAEFIRLGSDCAIGYDAAQMVLESLTRFADEFKHHTEEQ 136


>gi|315180795|gb|ADT87709.1| electron transport complex protein RnfC [Vibrio furnissii NCTC
           11218]
          Length = 824

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 103/324 (31%), Gaps = 68/324 (20%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY--LVVNADESEPGTCKD 94
           +   + +I+ ++ +G+ G GGAGF T        K+ S        +VNA E EP    D
Sbjct: 130 QTQPEELIDIIRNAGIAGLGGAGFPTAK------KIQSGLSRVEIFIVNAAECEPYITAD 183

Query: 95  RDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSK 154
             +MR     +I+G  I    +      I V         +LQ A +             
Sbjct: 184 DALMREHAQEIIDGIGIVEHILQPKLTVIGVEDNKPEAIRALQLAAEG------------ 231

Query: 155 LGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
                DI++      Y  G    L++ L   +          A++G+      V NV SI
Sbjct: 232 ----KDIVIRAIPTKYPSGGAKQLIKLLTDLEV---PAGKHSADIGV-----IVQNVGSI 279

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGI 273
             +   +  G               ++ +++G     P  V   +      L+++     
Sbjct: 280 QAIKRAVVDGEPLIR----------RVVTLTGKTFTQPRNVWVRLGTPVQSLLDEFGY-- 327

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                 L  +I GGS +                        L  A V ++  +  I+   
Sbjct: 328 -QADKKLPRLILGGSMMGF---------------------TLPHANVPIVKIANCILAPS 365

Query: 334 WR-LSVFYKHESCGQCTPCREGTG 356
              +       +C +C  C +   
Sbjct: 366 RNEIPQHDYEMACIRCGQCADACP 389


>gi|261821594|ref|YP_003259700.1| electron transport complex protein RnfC [Pectobacterium wasabiae
           WPP163]
 gi|261605607|gb|ACX88093.1| electron transport complex, RnfABCDGE type, C subunit
           [Pectobacterium wasabiae WPP163]
          Length = 737

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 92/318 (28%), Gaps = 66/318 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +        L++N  E EP    D  +M+     +++G  I SF +   
Sbjct: 152 FPTAAKLQGGMRG----IETLIINGAECEPYITADDRLMQECADEIVQGVEILSFLLQPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ AV               G   D+ +      Y  G    L 
Sbjct: 208 RILIGIEDNKPEAISALRLAV---------------GKRSDMQLRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          A +G+      + NV +   +   +  G               
Sbjct: 253 KILTGKEV---PFGKHSATIGV-----LMQNVGTAFAIKRAVIDGEPLT----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  +  P  V   +      L+++  GG          V+ GG  +        
Sbjct: 295 RVVTLTGEALRQPGNVWARLGTPVRHLLKQ--GGFHVNKQP--MVVMGGPLMGFTLPS-- 348

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG- 356
               +                         ++            E SC +C+ C +    
Sbjct: 349 LDVPIVKIS-------------------NCLLAPSHSEMEPVAEEQSCIRCSKCADACPA 389

Query: 357 -WMMRVMERLVKGIAQKR 373
             + + +    +G   ++
Sbjct: 390 GLLPQQLYWFSRGQEHEK 407


>gi|271500636|ref|YP_003333661.1| RnfABCDGE type electron transport complex subunit C [Dickeya
           dadantii Ech586]
 gi|270344191|gb|ACZ76956.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya
           dadantii Ech586]
          Length = 759

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 94/319 (29%), Gaps = 67/319 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +        L++NA E EP    D  +M+     + +G  I    +   
Sbjct: 152 FPTAAKLQGGLRG----IETLIINAAECEPYITADDRLMQECAQEIAQGVDILDHLLQPQ 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              + +         +L+ A+ +                  I +      Y  G    L 
Sbjct: 208 RILLGIEDNKPEAIRALRVALVD---------------YPRIQMRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK+          A++G+      + NV +   +   +  G               
Sbjct: 253 RILTGKEV---PFGKHSASIGV-----LMQNVGTAYAIKRAVIDGEPLT----------E 294

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  +  P  V   +      L+      +         VI GG  +   LPA  
Sbjct: 295 RVVTLTGDALRQPGNVWVRLGTPVRHLLRHAGYHVTTTQP---MVIMGGPLMGFTLPA-- 349

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW-RLSVFYKHESCGQCTPCREGTG 356
                                   ++  S  I+      + V  + ++C +C+ C +   
Sbjct: 350 -LDVP-------------------IIKTSNCILAPARDEIQVQEEEQACIRCSKCADACP 389

Query: 357 --WMMRVMERLVKGIAQKR 373
              + + +    +G   ++
Sbjct: 390 AGLLPQQLYWFSRGQEHEK 408


>gi|332654905|ref|ZP_08420647.1| electron transport complex, RnfABCDGE type, C subunit
           [Ruminococcaceae bacterium D16]
 gi|332516248|gb|EGJ45856.1| electron transport complex, RnfABCDGE type, C subunit
           [Ruminococcaceae bacterium D16]
          Length = 306

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 71/223 (31%), Gaps = 35/223 (15%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             R+  +  +  +G+   GG    T ++     +    +   L+VNA E EP    D  +
Sbjct: 119 MNREEALQRICQAGITSLGGGASPTHLR----IRQAVGKTEILIVNAAECEPYLTADHRL 174

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           +  +   +++G  + S  + A  A + V G+ +   E                       
Sbjct: 175 LLEKGDQILQGVQMLSRLVRAEKAILVVAGDKLNAVE--------------FLERRLRRK 220

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
             ++ +      Y  G E  L+ ++ G++  P        +VG       V NV ++  +
Sbjct: 221 KREVELVTIQTRYPLGMEKQLIRAVTGREVSP---GQSALDVG-----CAVFNVATVYAI 272

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSI 260
              L  G                     G V  P  +   +  
Sbjct: 273 RHALLTGEPLTHRAVT---------VSGGAVARPRNLWVPIGT 306


>gi|300920235|ref|ZP_07136681.1| respiratory-chain NADH dehydrogenase subunit [Escherichia coli MS
           115-1]
 gi|300412737|gb|EFJ96047.1| respiratory-chain NADH dehydrogenase subunit [Escherichia coli MS
           115-1]
          Length = 447

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 91/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R    +VNA E EP    D+ +M  +   L  G   A  A G  
Sbjct: 30  FPTHIKLQA-------RVDTFLVNAAECEPMLKVDQQLMAQQASRLFRGVHYAMKATGTS 82

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++       Q A++                  DI +H     Y  G+E  ++
Sbjct: 83  SGIIALKEKY-------QLAINALTPL----------LPPDIRLHILPDVYPAGDEVLII 125

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 126 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 167

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P TV   + ++  E++    G            I GG  +  L      
Sbjct: 168 RTLTVNGAVAKPITVTVPIGMSLREVLALAGGATVDAP----GFINGGPMMGSLITS--L 221

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  S  +I+      R  +      C QC  C +   
Sbjct: 222 DTPVSKT----------TGGLLVLPNSHSLIQRRLQNDRSVLAVAKTVCEQCRLCTDLCP 271

Query: 357 W 357
            
Sbjct: 272 R 272


>gi|152979363|ref|YP_001344992.1| putative glutamate synthase (NADPH) small subunit [Actinobacillus
           succinogenes 130Z]
 gi|150841086|gb|ABR75057.1| FAD dependent oxidoreductase [Actinobacillus succinogenes 130Z]
          Length = 612

 Score = 78.9 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 1/103 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V      T  +   +        ++CG+C PCR+G   +  ++ +++ G   +  +  + 
Sbjct: 27  VQSFPPGTCPLVVQYASLRSSVSQTCGKCVPCRDGIPQLSILVRKVLDGEGDESTMKQIR 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           E+++ I   + CA+G   A+ I   I+ F+   E  I     C
Sbjct: 87  ELAEMIRDGSDCAIGYQPAFEILDSIEEFKEEYESHI-HNKSC 128


>gi|226322497|ref|ZP_03798015.1| hypothetical protein COPCOM_00268 [Coprococcus comes ATCC 27758]
 gi|225209114|gb|EEG91468.1| hypothetical protein COPCOM_00268 [Coprococcus comes ATCC 27758]
          Length = 610

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 1/98 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +             +CG+C PCR G   +  ++  ++ G A    +DL+ E+S +I  
Sbjct: 35  CPVDMTRAFLEMCHTHTCGKCVPCRVGLWQLKNLLTDVMNGDATMETLDLMEELSVSIME 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNFQ 425
              CA+G  AA  +   +   R   EE + Q  RC  Q
Sbjct: 95  GADCAIGYEAAHMVYKSLMGCREDYEEHVRQ-GRCTCQ 131


>gi|291458769|ref|ZP_06598159.1| electron transport complex, RnfABCDGE type, C subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291418686|gb|EFE92405.1| electron transport complex, RnfABCDGE type, C subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 488

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 81/237 (34%), Gaps = 42/237 (17%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     K       Y++VNA E EP    +   +  +    + G         A 
Sbjct: 99  FPTDVKLKLDLKN-----GYVLVNAAECEPLLAHNMKQIMEQCEKTLRGVEYCMKITHAP 153

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++ +  RE E L+           L  +  +G      +H     Y  GEE A++
Sbjct: 154 QAVIAIKAKHKREIEELKK---------YLPEHPGIG------IHLLPDLYPMGEERAVV 198

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + GK   P    P  A+         V NVE++  V   +      +          T
Sbjct: 199 REVLGK-LLPPTALPSAADA-------VVINVETVLRVAEAIEDRRPVF----------T 240

Query: 240 KLFSISGHVNY----PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
           K  +++G +          +  +  T  ELIE+  G      + +L     G +V  
Sbjct: 241 KNLTVAGKLKRGTESQVFQDVPIGTTVGELIERAGGIDGEYGEIILGGPFTGHAVGM 297


>gi|293401465|ref|ZP_06645608.1| putative electron transport complex, RnfABCDGE type, C subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305103|gb|EFE46349.1| putative electron transport complex, RnfABCDGE type, C subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 430

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 100/328 (30%), Gaps = 60/328 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K+ F   V       L++NA E EP    D  +++     L+ G +       A 
Sbjct: 141 FPAYIKYKFAKDVEK-----LIINAVECEPFITADYKMIQAHKEELVTGILAMKKMAMAK 195

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++          + AV      GL G          + V      Y  G E  L+
Sbjct: 196 EAVIAIKKTHPDLISFCEEAVK-----GLDG----------VSVVAVPDVYPMGWERVLV 240

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             +  K+ +       P  VG       VNN  +       L  G +            T
Sbjct: 241 REIMHKEYE-----KLPGEVG-----AIVNNATTAIAFGNALLHGEAII----------T 280

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP--CLPAG 296
           K  ++SG+ + +P  V   + +  +E++E  CGG       L   I GG  +    +   
Sbjct: 281 KTLTVSGNAIKHPQNVTVPVGVPVNEVVE-ACGGYTCDDVKL---IAGGPMMGKTIVNDK 336

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI------IKAI-------WRLSVFYKHE 343
            +    M+   +         A +     S         ++                   
Sbjct: 337 FVIDRNMNAITILANKPYDSVACLRCGKCSDHCPAGLQPVRIAQAVKTKDKNAMEKLCAL 396

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQ 371
            C +C  C       + V E + K   Q
Sbjct: 397 DCIECGLCTFICPSRLDVTENVRKAKRQ 424


>gi|52424786|ref|YP_087923.1| putative glutamate synthase (NADPH) small subunit [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306838|gb|AAU37338.1| GltD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 612

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 323 MDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
               T  +   +        ++CG+C PCR+G   +  ++  ++ G      +  + E++
Sbjct: 30  FPPGTCPLVVQYASLRSSMSQTCGKCVPCRDGIPHLSFLLRDILAGEGDDSTMRQIRELA 89

Query: 383 KNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + I   + CA+G   A  I   I+ F+   E  I     C
Sbjct: 90  EMIRDGSDCAIGYQPAIEILDSIEEFKEEYESHI-HNKSC 128


>gi|119476465|ref|ZP_01616816.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2143]
 gi|119450329|gb|EAW31564.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2143]
          Length = 684

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 112/349 (32%), Gaps = 67/349 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             ++  L   R  ++N ++ +G+ G GGAGF + +K S            L++N  E EP
Sbjct: 114 QGINNYLNLDRTELVNHIRNAGIAGMGGAGFPSAVKLSV---RGEQTVETLIINGTECEP 170

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESLQAAVDECYASGL 148
               D  +MR     +I G  I  + I       I +         +L  A +       
Sbjct: 171 YITSDDCLMRERADEIIAGIEILRYLINPMKETLIGIEDNKPEAIAALNRAAEGTA---- 226

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                       I V      Y  G E  L++ L GK+         P +VG+       
Sbjct: 227 ------------INVVSFPTKYPSGGEKQLIQILTGKEV---PAGGLPGDVGI-----VC 266

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
            N+ +   +   +  G    S          ++ +++G+  ++    E  +      L++
Sbjct: 267 QNIGTTVAIYRAIAHGEPLIS----------RITTVTGNACDHNTNYEVLLGTPVSYLLD 316

Query: 268 KHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                          +I GG  +                        L  + V ++  S 
Sbjct: 317 HSG----FHQKKCSRLIMGGPMMGF---------------------TLENSNVPIVKTSN 351

Query: 328 DIIK-AIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            I+   +  L      ++C +C  C E      + + +    +G   ++
Sbjct: 352 CILAPTVDELPPPTPAQACIRCGMCAEVCPASLLPQQLYWFSRGKEYEK 400


>gi|152988215|ref|YP_001347022.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PA7]
 gi|150963373|gb|ABR85398.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PA7]
          Length = 776

 Score = 78.1 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 96/256 (37%), Gaps = 42/256 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           +    ++  ++A+G+ G GGAGF T  K   +    ++R H LVVN  E EP    D  +
Sbjct: 122 ESPPALLERIRAAGIGGLGGAGFPTAAK---LAARPAERIHTLVVNGAECEPYISADDLL 178

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           MR     ++ G  I +  +      I V  +      +L A              +    
Sbjct: 179 MRERATRVLGGIDILARILEPEEVLIGVEDDKPEAIAALGA--------------ALGER 224

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              I+V      Y  G E  L++ L G++         PA++G+        NV ++A V
Sbjct: 225 PYRIVV--LPSRYPSGGERQLIQLLTGQEVPADG---LPADIGI-----LCQNVGTLAAV 274

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +  G              +++ +++G  +  P  VE  +    +EL+          
Sbjct: 275 HDAVFLG----------RPLISRIVTLTGKALARPMNVEALIGTPVNELLAFAG----LA 320

Query: 277 WDNLLAVIPGGSSVPC 292
            + L  V+ GG  +  
Sbjct: 321 AERLQRVLMGGPMMGF 336


>gi|307130991|ref|YP_003883007.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
 gi|306528520|gb|ADM98450.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
          Length = 739

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 93/319 (29%), Gaps = 67/319 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +        L++NA E EP    D  +M+     + +G  I    +   
Sbjct: 152 FPTAAKLQGGLRG----IDTLIINAAECEPYITADDRLMQECAQEIAQGVDILDHLLQPQ 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              + +         +L+AA+ +                  I +      Y  G    L 
Sbjct: 208 RILLGIEDNKPEAIAALRAALVD---------------YPRIQMRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L GK+          A++G+      + NV +   +   +  G               
Sbjct: 253 RILTGKEV---PFGKHSASIGV-----LMQNVGTAYAIKRAVINGEPLT----------E 294

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  +  P  V   +      L+      +         VI GG  +   LPA  
Sbjct: 295 RIVTLTGDALRQPGNVWARLGTPVRHLLRHAGYHVTTTQP---MVIMGGPLMGFTLPA-- 349

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW-RLSVFYKHESCGQCTPCREGTG 356
                                   ++  S  I+      +    + ++C +C  C +   
Sbjct: 350 -LDVP-------------------IIKTSNCILAPARDEIQAQEEEQACIRCGKCADACP 389

Query: 357 --WMMRVMERLVKGIAQKR 373
              + + +    +G   ++
Sbjct: 390 AGLLPQQLYWFSRGQEHEK 408


>gi|213861431|ref|ZP_03385901.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 82

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           GTKL   SG V  P   E     T  E++E + GG+R G     A  PGG+    L    
Sbjct: 2   GTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLK-FKAWQPGGAGTDFLTEAH 60

Query: 298 MRGAIMDYDGLKEMGSGLGTA 318
           +    M+++ + + GS LGTA
Sbjct: 61  L-DLPMEFESIGKAGSRLGTA 80


>gi|237736591|ref|ZP_04567072.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
 gi|229420453|gb|EEO35500.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
          Length = 642

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 57/152 (37%), Gaps = 11/152 (7%)

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
            KL +I+G VN P T+E   + T  ++I    G       N  A   G      L AG +
Sbjct: 32  EKLVTIAGRVNNPGTIEIPENSTLRDVIGLVGG--IKNKKNFKAAQFGLPFGGFLTAGSL 89

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY----KHESCGQCTPCREG 354
              I     L   G       +I++     II        F     K+    Q       
Sbjct: 90  DKVIDF--SLFPEGVEKN---IIILSEEDCIITFAKFYVEFLIAKVKNSEYEQYFQVENE 144

Query: 355 TGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
              + R+++R+ KG A  R++ LL  +S  I+
Sbjct: 145 IERIWRILDRISKGKATMRDVYLLRYLSDIIK 176


>gi|238683703|gb|ACR54130.1| NADH dehydrogenase flavoprotein 1 [Palaemonetes varians]
          Length = 59

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 40/49 (81%)

Query: 371 QKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
              EID L+EVSK IEG TICALGD AAWP+QGLI++FRP++EER+  +
Sbjct: 2   SPDEIDALWEVSKQIEGHTICALGDGAAWPVQGLIRHFRPVLEERMATF 50


>gi|237732052|ref|ZP_04562533.1| propanediol utilization protein [Citrobacter sp. 30_2]
 gi|226907591|gb|EEH93509.1| propanediol utilization protein [Citrobacter sp. 30_2]
          Length = 451

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 92/301 (30%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          +    +VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 34  FPTHVKLQA-------QVDTFLVNAAECEPMLKVDQQLMAVQAERLIRGVQYAMTATGAS 86

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++         A+     +G             I +H     Y  G+E   +
Sbjct: 87  AGIIALKEKYQGAI----NALTPLLPAG-------------IRLHILPDVYPAGDEVLTI 129

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P               P +V  V +       + R         R      
Sbjct: 130 WMATGRRVPP------------AALPVSVGVVVNNVQTVLNIARAVEQQYPVTR------ 171

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + ++  +++    G            I GG  +  L      
Sbjct: 172 RTLTVNGAVASPITLTVPIGMSLRDVLALAGGATVDDP----GFINGGPMMGGLITS--L 225

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+ +S  +I+      R  +      C QC  C +   
Sbjct: 226 DTPVSKT----------TGGLLVLPKSHALIQRRMQDERTVLSVAKTVCEQCRLCTDLCP 275

Query: 357 W 357
            
Sbjct: 276 R 276


>gi|329769408|ref|ZP_08260821.1| hypothetical protein HMPREF0433_00585 [Gemella sanguinis M325]
 gi|328838978|gb|EGF88569.1| hypothetical protein HMPREF0433_00585 [Gemella sanguinis M325]
          Length = 395

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 55/271 (20%), Positives = 90/271 (33%), Gaps = 48/271 (17%)

Query: 22  DSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           D      +  ++       D  +  +K +G+ G GGAGF TG+K S           Y++
Sbjct: 68  DKEQSDDYVKLE-----PTDDHLQRIKDAGIVGVGGAGFPTGIKLS-----AQIPGGYVI 117

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
            NA E EP    +   M   P  L+ G        GA   +I               A+ 
Sbjct: 118 ANAAECEPILGHNVRYMEEHPEELVRGLKYILKLTGAKEGYI---------------AIK 162

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
             Y   LL        + +I +      Y  G+E  ++    G   +P  + P  AN   
Sbjct: 163 TKYRKALLALGKACKNEPNISIKILPDMYPAGDERVIVRETLGVVLKP-GQLPLEANA-- 219

Query: 202 YGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMSI 260
                 ++NVE+I  +   +                  K  ++ G V+ P       + +
Sbjct: 220 -----IISNVETIKRIVEAIELDKPLID----------KDITVGGRVHNPDIFMNVPIGL 264

Query: 261 TFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
                IEK  G I    +    ++ GG    
Sbjct: 265 PISVFIEKAGGYINPHGE----IVRGGPFTG 291


>gi|150391555|ref|YP_001321604.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149951417|gb|ABR49945.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Alkaliphilus metalliredigens QYMF]
          Length = 445

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 99/301 (32%), Gaps = 57/301 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     +       ++++N  E EP    D+ +M + P  +I+G   A   +   
Sbjct: 20  FPTHVKLDAKAE-------FVLLNGAECEPLLRVDQQLMEYFPEEVIKGLEKARQHVKGK 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++ +  +  + L+  + E                  + +   A  Y  G+E  L+
Sbjct: 73  KALIGIKEKHTKVIDKLERKIKELQVES------------TVEIKKMADVYPAGDEQVLV 120

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L G+      +   P +VG       V N E+   +   + +    +S          
Sbjct: 121 YELTGRVV---PEAGIPIHVG-----CVVINSETALNIHRAINQDPVTHSYI-------- 164

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
              ++SG V  P T +  + +   + ++               VI GG  +  +      
Sbjct: 165 ---TVSGDVPNPLTAKVPVGMKIIDALKLTGINDFQNHR----VIDGGPMMGRVLESL-- 215

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK---AIWRLSVFYKHESCGQCTPCREGTG 356
                     E      +   IV+ +   +IK     W+ S      +C QC  C +   
Sbjct: 216 ----------EGSVTKKSKGYIVLHKDHYLIKKKTVTWKQSRRINRSACEQCRLCTDLCP 265

Query: 357 W 357
            
Sbjct: 266 R 266


>gi|255657203|ref|ZP_05402612.1| putative electron transfer protein [Clostridium difficile
           QCD-23m63]
 gi|296451958|ref|ZP_06893673.1| probable electron transfer protein [Clostridium difficile NAP08]
 gi|296879648|ref|ZP_06903625.1| probable electron transfer protein [Clostridium difficile NAP07]
 gi|296259149|gb|EFH06029.1| probable electron transfer protein [Clostridium difficile NAP08]
 gi|296429361|gb|EFH15231.1| probable electron transfer protein [Clostridium difficile NAP07]
          Length = 437

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 91/268 (33%), Gaps = 43/268 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I++ +K +G+ G GGAGF T +K +            ++ NA E EP    +   +  
Sbjct: 77  EGILDLIKEAGVVGMGGAGFPTHVKLNIDL-----NGGTILANAAECEPLLAHNIKEIEE 131

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            P  + +G   A     A    + ++ +  +  E+ +  +         G N        
Sbjct: 132 RPEIVYQGIKYAMEVTNAGKGMLAIKSKHPKAIEAFKKVIKP-------GDN-------- 176

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I V      Y  GEE A++  + GK  +P  + P  AN         V NVE++  +   
Sbjct: 177 IEVAELVDMYPMGEERAIVRDVLGKLLEP-TQLPSEANA-------VVINVETLTRIVEA 228

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDN 279
           + +            ++   +             E   +  T  ELIE+  G      + 
Sbjct: 229 VEQKRPVI-------SKNITVVGQLNSGKESIVFEDVPIGTTVGELIERAGGIKGEYGE- 280

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
              +I GG             A +    
Sbjct: 281 ---IILGGPFTG---KATTLDAPITKTS 302


>gi|126700866|ref|YP_001089763.1| putative electron transfer protein [Clostridium difficile 630]
 gi|254976843|ref|ZP_05273315.1| putative electron transfer protein [Clostridium difficile
           QCD-66c26]
 gi|255094230|ref|ZP_05323708.1| putative electron transfer protein [Clostridium difficile CIP
           107932]
 gi|255102395|ref|ZP_05331372.1| putative electron transfer protein [Clostridium difficile
           QCD-63q42]
 gi|255308295|ref|ZP_05352466.1| putative electron transfer protein [Clostridium difficile ATCC
           43255]
 gi|255315983|ref|ZP_05357566.1| putative electron transfer protein [Clostridium difficile
           QCD-76w55]
 gi|255518640|ref|ZP_05386316.1| putative electron transfer protein [Clostridium difficile
           QCD-97b34]
 gi|255651762|ref|ZP_05398664.1| putative electron transfer protein [Clostridium difficile
           QCD-37x79]
 gi|260684788|ref|YP_003216073.1| putative electron transfer protein [Clostridium difficile CD196]
 gi|260688446|ref|YP_003219580.1| putative electron transfer protein [Clostridium difficile R20291]
 gi|306521555|ref|ZP_07407902.1| putative electron transfer protein [Clostridium difficile
           QCD-32g58]
 gi|115252303|emb|CAJ70144.1| putative electron transfer protein [Clostridium difficile]
 gi|260210951|emb|CBA66207.1| putative electron transfer protein [Clostridium difficile CD196]
 gi|260214463|emb|CBE06927.1| putative electron transfer protein [Clostridium difficile R20291]
          Length = 437

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 91/268 (33%), Gaps = 43/268 (16%)

Query: 41  DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRH 100
           + I++ +K +G+ G GGAGF T +K +            ++ NA E EP    +   +  
Sbjct: 77  EGILDLIKEAGVVGMGGAGFPTHVKLNIDL-----NGGTILANAAECEPLLAHNIKEIEE 131

Query: 101 EPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVD 160
            P  + +G   A     A    + ++ +  +  E+ +  +         G N        
Sbjct: 132 RPEIVYQGIKYAMEVTNAGKGMLAIKSKHPKAIEAFKKVIKP-------GDN-------- 176

Query: 161 IIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTI 220
           I V      Y  GEE A++  + GK  +P  + P  AN         V NVE++  +   
Sbjct: 177 IEVAELVDMYPMGEERAIVRDVLGKLLEP-TQLPSEANA-------VVINVETLTRIVEA 228

Query: 221 LRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVE-ESMSITFDELIEKHCGGIRGGWDN 279
           + +            ++   +             E   +  T  ELIE+  G      + 
Sbjct: 229 VEQKRPVI-------SKNITVVGQLNSGKESIVFEDVPIGTTVGELIERAGGIKGEYGE- 280

Query: 280 LLAVIPGGSSVPCLPAGQMRGAIMDYDG 307
              +I GG             A +    
Sbjct: 281 ---IILGGPFTG---KATTLDAPITKTS 302


>gi|192362376|ref|YP_001981502.1| electron transport complex protein RnfC [Cellvibrio japonicus
           Ueda107]
 gi|190688541|gb|ACE86219.1| Electron transport complex protein RnfC [Cellvibrio japonicus
           Ueda107]
          Length = 786

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 108/336 (32%), Gaps = 46/336 (13%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAI-GA 118
           F T +K   +    +     L++N  E EP    D  +M+     L+EG ++ S  +   
Sbjct: 147 FPTDIK---LAPKSTQVIDTLIINGAECEPYITADDILMQVNARELLEGTLLISHILHHP 203

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETAL 178
               + V     +   +L+ A+ E   +    +N        I V      Y  G    L
Sbjct: 204 RQLLVGVEDNKPKAIAALKEALLELRLNRAEAAN--------IQVVAIPTKYPSGGAKQL 255

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
            + L G++          A+VG+        NV +       +R G           +R 
Sbjct: 256 TQILTGREI---PSGHHSADVGV-----ICVNVGTAVAAWRAVRYGEPLI-------SRI 300

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           T L   +        +E  +    D +++ H    R G   ++     G ++P L A  +
Sbjct: 301 TTLVGEALDTQR--NIEVRLGTPIDYVLQVHGFDARKGSRVIMGGPMMGFTLPDLRAPII 358

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIV---MDRSTDIIKAI-------WRLSVFYKHES---- 344
           +                  A   +   +      +  +        +   F + ES    
Sbjct: 359 KTTNCLLAPSDTEMPLPPPAQACIRCGLCAEACPVDLLPQQLFWYAQAEDFERLESHNLF 418

Query: 345 -CGQCTPCREGTGWMMRVME--RLVKGIAQKREIDL 377
            C +C  C       + +++  R  KG    +E++ 
Sbjct: 419 DCIECGACAYVCPSSIPLVQYYRAAKGSIHLQELEK 454


>gi|315650048|ref|ZP_07903127.1| pyridine nucleotide-disulfide oxidoreductase [Eubacterium saburreum
           DSM 3986]
 gi|315487677|gb|EFU77981.1| pyridine nucleotide-disulfide oxidoreductase [Eubacterium saburreum
           DSM 3986]
          Length = 595

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G G + +++E ++ G      + L+ + + +I  
Sbjct: 20  CPVDMSRAFLELAHAQTCGKCVPCRIGLGQLEKLIENVLDGKGSMASLKLMEKTALSIME 79

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
              CA+G  AA  +   I  +R    E I  + RC 
Sbjct: 80  SADCAIGYEAANMVYKGIIGYRDDYIEHIA-HGRCT 114


>gi|153855000|ref|ZP_01996213.1| hypothetical protein DORLON_02219 [Dorea longicatena DSM 13814]
 gi|149752497|gb|EDM62428.1| hypothetical protein DORLON_02219 [Dorea longicatena DSM 13814]
          Length = 610

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G G +   +  ++ G A  + +D++ + + +I  
Sbjct: 35  CPVDMARAFLELCHAQTCGKCVPCRIGLGQLNNFIREVLDGKATMKTLDIMEQTALSIME 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
              CA+G  AA  +   +  +R    E I Q  RC 
Sbjct: 95  SADCAIGYEAANMVYKGLIGYRDDYIEHI-QNGRCT 129


>gi|166031622|ref|ZP_02234451.1| hypothetical protein DORFOR_01322 [Dorea formicigenerans ATCC
           27755]
 gi|166028599|gb|EDR47356.1| hypothetical protein DORFOR_01322 [Dorea formicigenerans ATCC
           27755]
          Length = 610

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G G +  ++ +++ G A    +D + + +K+I  
Sbjct: 35  CPVDLSRAFLELCHAQTCGKCVPCRVGLGQLNHLIRKVLNGNATMETLDTMEQTAKSIME 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
              CA+G  AA  +   +  +R    E I    RC 
Sbjct: 95  SADCAIGYEAAHMVYKGLIGYRDDYIEHIKN-GRCT 129


>gi|331003602|ref|ZP_08327098.1| hypothetical protein HMPREF0491_01960 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412322|gb|EGG91714.1| hypothetical protein HMPREF0491_01960 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 610

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G G + +++E ++ G      + L+ + + +I  
Sbjct: 35  CPVDMSRAFLELAHAQTCGKCVPCRIGLGQLEKLIENVLDGKGSMASLKLMEKTALSIME 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
              CA+G  AA  +   I  +R    E I  + RC 
Sbjct: 95  SADCAIGYEAANMVYKGIIGYRDDYIEHIA-HGRCT 129


>gi|238792133|ref|ZP_04635768.1| Electron transport complex protein rnfC [Yersinia intermedia ATCC
           29909]
 gi|238728370|gb|EEQ19889.1| Electron transport complex protein rnfC [Yersinia intermedia ATCC
           29909]
          Length = 545

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 110/348 (31%), Gaps = 66/348 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
                 L++    +++ +  +G+ G GGAGF T  K              L++NA E EP
Sbjct: 89  QPWADYLQRDNAALLDRIHQAGIAGLGGAGFPTASKLQGGLNS----VTTLIINAAECEP 144

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     ++ G  I    +      I +         +LQ A+         
Sbjct: 145 YITADDRLMQDHAQEVVTGIDILRHLLQPQQVLIGIEDNKPAAIAALQYALR-------- 196

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                 G+D +I +      Y  G    L + L GK+          +++G+      + 
Sbjct: 197 ------GHD-EIQLRVVPTKYPSGGAKQLTKILTGKEV---PFGKHSSSIGV-----LMQ 241

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV ++  +   +                  ++ +++G  +  P      +      L++ 
Sbjct: 242 NVGTVVAIKRAIIDDEPLI----------ERVVTLTGDALAKPGNFWARIGTPVSHLLKL 291

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                +        VI GG  +   LP+  +    +    L    + +G +         
Sbjct: 292 AGFQPQQQP----MVIMGGPLMGFTLPSLDVPIVKISNCILAPTEAEMGLSE-------- 339

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
                          +SC +C  C +      + + +    +G   ++
Sbjct: 340 -------------AEQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 374


>gi|167768514|ref|ZP_02440567.1| hypothetical protein CLOSS21_03073 [Clostridium sp. SS2/1]
 gi|167710038|gb|EDS20617.1| hypothetical protein CLOSS21_03073 [Clostridium sp. SS2/1]
 gi|291560481|emb|CBL39281.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductases [butyrate-producing bacterium SSC/2]
          Length = 610

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            +SCG+C PCR G G +  ++  ++ G A  R +  ++E +K+I  
Sbjct: 35  CPVDMSRAFLEICHAQSCGKCVPCRVGLGQLKNLITDVLDGKATIRTLTEIHETAKSIME 94

Query: 388 RTICALGDAAAWPI-QGLIKNFRPLIEERIDQYHRC 422
              CA+G  AA  + +G I  F+    E I  YHRC
Sbjct: 95  SADCAIGYEAANMVYKGAI-GFKDDYVEHIM-YHRC 128


>gi|317498715|ref|ZP_07957006.1| pyridine nucleotide-disulfide oxidoreductase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894009|gb|EFV16200.1| pyridine nucleotide-disulfide oxidoreductase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 610

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            +SCG+C PCR G G +  ++  ++ G A  R +  ++E +K+I  
Sbjct: 35  CPVDMSRAFLEICHAQSCGKCVPCRVGLGQLKNLITDVLDGKATIRTLTEIHETAKSIME 94

Query: 388 RTICALGDAAAWPI-QGLIKNFRPLIEERIDQYHRC 422
              CA+G  AA  + +G I  F+    E I  YHRC
Sbjct: 95  SADCAIGYEAANMVYKGAI-GFKDDYVEHIM-YHRC 128


>gi|315925132|ref|ZP_07921349.1| pyridine nucleotide-disulfide oxidoreductase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622031|gb|EFV01995.1| pyridine nucleotide-disulfide oxidoreductase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 612

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +         +            ++CG+C PCR G   +  ++  ++ G A    + L+ 
Sbjct: 27  IEASPPGICPVDTTRAFLELCHAQTCGKCVPCRIGLLQLKHLLTEVLDGEATMATLALIE 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           E +++I     CA+G  AA  +   ++  R   E  I +  RC
Sbjct: 87  ETARSISETADCAIGYEAAHMVWRCLRECRDDFEAHI-KSGRC 128


>gi|238785614|ref|ZP_04629593.1| Electron transport complex protein rnfC [Yersinia bercovieri ATCC
           43970]
 gi|238713501|gb|EEQ05534.1| Electron transport complex protein rnfC [Yersinia bercovieri ATCC
           43970]
          Length = 556

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 118/348 (33%), Gaps = 66/348 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
                 L + ++ +++ +  +G+ G GGAGF T  K              L++NA E EP
Sbjct: 98  QPWADYLLRDKNSLLDRIHQAGIAGLGGAGFPTASKLQGGLNS----VTTLIINAAECEP 153

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     +I G  I    +      I +     +  E+LQ A+         
Sbjct: 154 YITADDRLMQDHADEVITGIEILMHLLQPQQVLIGIEDNKPQAIEALQQAL--------- 204

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                LG+D DI +      Y  G    L + L G++  P  K    +++G+      + 
Sbjct: 205 -----LGHD-DIQLRVVPTKYPSGGAKQLTKLLTGQE-VPCGK--HSSSIGV-----LMQ 250

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           NV ++  +   +            +     ++ +++G  ++        +      L++ 
Sbjct: 251 NVGTVVAIKRAIID----------DQPLIERVVTLTGDALSKLGNFWARIGTPVLHLLKL 300

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                +        VI GG  +   LP+ ++    +    L    + +G +         
Sbjct: 301 AGFQPQSQP----MVIMGGPLMGFTLPSLEVPIVKISNCILAPAEAEMGLSE-------- 348

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
                          +SC +C  C +      + + +    +G   ++
Sbjct: 349 -------------AEQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 383


>gi|312275027|gb|ADQ57822.1| hypothetical protein S500 [Hirudinaria manillensis]
          Length = 160

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
                 II  +   G+ G GGA F T +K S  P   ++    L++NA E EP    D  
Sbjct: 44  TMEPKEIIQRISDCGIVGLGGATFPTHVKLSPPPGSKAE---VLIINAVECEPYLTSDHI 100

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
           +M  +   ++ G  I   AI  + A I +        +
Sbjct: 101 LMMEKSEEILVGVAILMKAIEVNRAIIGIENNKKDAID 138


>gi|289523707|ref|ZP_06440561.1| PduS protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503399|gb|EFD24563.1| PduS protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 440

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 112/346 (32%), Gaps = 67/346 (19%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +D +I  V+ +G+ G GGAGF T +K        +D   Y++ N  E EP    D+ +
Sbjct: 1   MTKDELIELVRYAGVVGAGGAGFPTHVKL-----QATDIDTYVI-NGAECEPLLYVDQTL 54

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M +    LI      S A+G       V+ +      +LQAA                G 
Sbjct: 55  MLNWASYLIAASKAMSSAMGC-KVVFGVKQKHGDCISALQAA----------------GG 97

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           D    V      Y  G+E  LL    G +  P  +   P +VG       VNNVE++  +
Sbjct: 98  D----VCVLGDYYPAGDEVILLHECVG-RIVP--EGGLPLHVG-----AIVNNVETLYNI 145

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              L                      + G V+ P      + +   +L++   G      
Sbjct: 146 GRALE-----------GKPVTHSFVQVGGAVSSPGVWSVPLGVEASKLVKAAGGPTIDEP 194

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLS 337
                 + GG  +        + A      + +    L + +      +  +   + +  
Sbjct: 195 ----VFVDGGPMMG----QYHKDANFPVTKMTKAILVLPSNSAFARYENMPVSVMLRQ-- 244

Query: 338 VFYKHESCGQCTPCREGTGWM--------MRVMERLVKGIAQKREI 375
                 +C QC  C                ++M+ +     +  EI
Sbjct: 245 ---ARVACCQCNECTMVCSRYLIGYDLRPHKIMQAMAYESMRLPEI 287


>gi|238609524|ref|XP_002397505.1| hypothetical protein MPER_02055 [Moniliophthora perniciosa FA553]
 gi|215472091|gb|EEB98435.1| hypothetical protein MPER_02055 [Moniliophthora perniciosa FA553]
          Length = 75

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 39/47 (82%)

Query: 377 LLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           +L E++K +EGRTICALGDAAAWPIQGL+++FRP +E RI ++   N
Sbjct: 1   MLLELTKQVEGRTICALGDAAAWPIQGLMRHFRPEVEARIAKFREEN 47


>gi|116051508|ref|YP_789656.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586729|gb|ABJ12744.1| putative NADH:ubiquinone oxidoreductase, subunit RnfC [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 774

 Score = 76.2 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 108/335 (32%), Gaps = 51/335 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
            +    ++  ++A+G+ G GGAGF T  K   +    +D+ H LVVN  E EP    D  
Sbjct: 121 AESPLALLERIRAAGIGGLGGAGFPTAAK---LAARPADKIHTLVVNGAECEPYISADDL 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      + +  +      +L AA+ E              
Sbjct: 178 LMRERATQVLSGIDILVQILRPEEVLVGIEDDKPEAIAALGAALGERPY----------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 +      Y  G E  L++ L G++         PA++G+        NV ++A 
Sbjct: 227 -----RIVALPTRYPSGGERQLIQLLTGREVPADG---LPADIGI-----LCQNVGTLAA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   +  G           +R T L    G +  P  VE  +     EL+          
Sbjct: 274 VHDAVVLGRPLI-------SRITTLAG--GALERPMNVEALIGTPVHELLAFAGLAEGRL 324

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST---DIIKAI 333
              L+     G ++P L    ++       G          A   +          +  +
Sbjct: 325 ERVLMGGPMMGFALPDLSVPLIKTCNCLLAGDATELPEPVPAMPCIRCGDCARVCPVSLL 384

Query: 334 WRLSVFYK----HES--------CGQCTPCREGTG 356
            +   F+     HE         C +C  C     
Sbjct: 385 PQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|170726904|ref|YP_001760930.1| electron transport complex protein RnfC [Shewanella woodyi ATCC
           51908]
 gi|169812251|gb|ACA86835.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           woodyi ATCC 51908]
          Length = 784

 Score = 76.2 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 35/208 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F + +K +      +     L++NA E EP    D  IMR +   +++G  I    +   
Sbjct: 156 FPSHIKLN-----PASDIELLIINAIECEPYITSDDMIMREQSDAIMQGIAIVHRLLKPK 210

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +     +    +Q A+       +L  +        + +      Y  G E  L+
Sbjct: 211 RLIIAIEDNKPQAISIMQQALSR----SVLPEDG-------VRITTLPTLYPSGGEKQLI 259

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G++         PA +G+      V NV +   +   +           R      
Sbjct: 260 QILTGQEV---PSGAIPAQLGI-----LVQNVATCYAIQDAVL----------RNYPLIE 301

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELI 266
           ++ +I+G +V  P      +      L+
Sbjct: 302 RVVTITGNNVAKPGNYWLPIGTPISHLL 329


>gi|238762650|ref|ZP_04623620.1| Electron transport complex protein rnfC [Yersinia kristensenii ATCC
           33638]
 gi|238699295|gb|EEP92042.1| Electron transport complex protein rnfC [Yersinia kristensenii ATCC
           33638]
          Length = 537

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 95/318 (29%), Gaps = 66/318 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +   +    L++NA E EP    D  +M+     ++ G  I  + +   
Sbjct: 119 FPTASKL----QGGLNNVTTLIINAAECEPYITADDRLMQDHAAEVVLGIQILVYLLQPQ 174

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +LQ A+                    I +      Y  G    L 
Sbjct: 175 QVLIGIEDNKPEAIAALQQALRGQDE---------------IQLRVVPTKYPSGGAKQLT 219

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          +++G+      + NV ++  +   +                  
Sbjct: 220 KILTGKEV---PFGKHSSSIGV-----LMQNVGTVVAIKRAIIDDEPLI----------E 261

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  ++ P      +      L++      +        VI GG  +   LP+  
Sbjct: 262 RVVTLTGDALSQPGNFWARIGTPVLHLLKLAGFMPQQQP----MVIMGGPLMGFTLPSLD 317

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG- 356
           +    +    L    + +G +                        +SC +C  C +    
Sbjct: 318 VPIVKISNCLLAPADAEMGLSEP---------------------EQSCIRCGLCVDACPA 356

Query: 357 -WMMRVMERLVKGIAQKR 373
             + + +    +G   ++
Sbjct: 357 GLLPQQLYWFSRGEEHEK 374


>gi|123442264|ref|YP_001006245.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|166225386|sp|A1JM81|RNFC_YERE8 RecName: Full=Electron transport complex protein rnfC
 gi|122089225|emb|CAL12071.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 697

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 95/317 (29%), Gaps = 64/317 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K              L++NA E EP    D  +M+     ++ G  I  + +   
Sbjct: 152 FPTASKLQGGLNS----VTTLIINAAECEPYITADDRLMQEHASEVVLGTQILMYLLQPQ 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +LQ A+               G D +I +      Y  G    L 
Sbjct: 208 QVLIGIEDNKPEAIAALQHALR--------------GQD-EIQLRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          +++G+      + NV ++  +   +                  
Sbjct: 253 KILTGKEV---PFGKHSSSIGV-----LMQNVGTVVAIKRAIIDDEPLI----------E 294

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  ++ P      +      L++      +        VI GG  +        
Sbjct: 295 RVVTLTGDALSKPGNFWARIGTPVLHLLKLAGFTPQNQP----MVIMGGPLMGF------ 344

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-- 356
                         S L    V + +      +A   LS     +SC +C  C +     
Sbjct: 345 ------------TLSSLDVPIVKISNCILAPTEAEMGLSEP--EQSCIRCGLCVDACPAG 390

Query: 357 WMMRVMERLVKGIAQKR 373
            + + +    +G   ++
Sbjct: 391 LLPQQLYWFSRGEEHEK 407


>gi|301299993|ref|ZP_07206218.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852384|gb|EFK80043.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 436

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 85/270 (31%), Gaps = 52/270 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
             +  +  +K +G+ G GGAGF    K+            +L +NA E EP    +   +
Sbjct: 75  DTEDNLEAIKEAGIVGCGGAGFPAYAKYGT-----KIPDGHLFINAAECEPILGHNISRI 129

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
             +   +I+G       +GA    I ++ +       L+ A+                  
Sbjct: 130 ITDAEKIIKGIEYVKEIVGAKDVQIAIKHKHTNAVALLEEAIRG---------------H 174

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
            DI +      Y  GEE A++      K       P+ AN         V NVE++  V 
Sbjct: 175 KDISLELMKNRYPEGEERAIIRDSNLHKLLKTTDLPYAANA-------IVTNVETVFRVA 227

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGHVN--YPCTV---EESMSITFDELI------- 266
             +                 TK  ++ G +N      V   +  + +   +++       
Sbjct: 228 EAIED----------RKPVMTKDITVGGRLNGDNETVVVRKDVPLGMLVKDILAAYPDMA 277

Query: 267 ---EKHCGGIRGGWDNLLAVIPGGSSVPCL 293
              E   GG   G    L       S   +
Sbjct: 278 DYGELIMGGPFTGKRTSLDSPITKVSGGII 307


>gi|158319086|ref|YP_001511593.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Alkaliphilus oremlandii OhILAs]
 gi|158139285|gb|ABW17597.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Alkaliphilus oremlandii OhILAs]
          Length = 388

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 87/255 (34%), Gaps = 43/255 (16%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
           K  D  +  +K +G+ G GGAGF T +K             Y++VNA E EP    +   
Sbjct: 73  KATDNYLEAIKEAGVVGAGGAGFPTHIKL-----DVDLTGGYVIVNAAECEPVLNHNMLA 127

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           +  +P  ++ G         A   +I ++       ++  A +        LG   K   
Sbjct: 128 IEKQPDLILRGLKYVMEITKAAKGYIAIKP------KNKNAIIA-------LGKVCKSES 174

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
             +I +      Y  G+E  ++  L   + +P      P  V      T V N+E+I  +
Sbjct: 175 --NIEIKFLPDMYPAGDERVIVRELLNVELKP---GKLPIEV-----NTVVLNIETIKNI 224

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV-EESMSITFDELIEKHCGGIRGG 276
              +           +     TK  ++ G V  P    E  +       I   CGG    
Sbjct: 225 CLAIE----------KRKPVITKDITVGGRVKAPKVFLESPIGYPVSYFI-DQCGGYENP 273

Query: 277 WDNLLAVIPGGSSVP 291
                 ++ GG    
Sbjct: 274 HGE---IVIGGPFTG 285


>gi|145598188|ref|YP_001162264.1| electron transport complex protein RnfC [Yersinia pestis Pestoides
           F]
 gi|145209884|gb|ABP39291.1| iron-sulfur binding NADH dehydrogenase [Yersinia pestis Pestoides
           F]
          Length = 581

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 92/299 (30%), Gaps = 62/299 (20%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D  +M+     +I G  I    +      I +         +LQ 
Sbjct: 167 TLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQR 226

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+               G D DI +      Y  G    L + L GK+          ++
Sbjct: 227 ALR--------------GQD-DIHLRVVPTKYPSGGAKQLTKILTGKEV---PFGKHSSS 268

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           +G+      + NV ++  +   +                  ++ +++G  ++ P      
Sbjct: 269 IGV-----LMQNVGTVVAIKRAVIDDEPLI----------ERVVTLTGDALSSPGNFWAR 313

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG 316
           +      L++           N   VI GG  +   LP+  +    +    L    + +G
Sbjct: 314 IGTPVLYLLKLAG----FKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMG 369

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            +                        +SC +C  C +      + + +    +G   ++
Sbjct: 370 LSEP---------------------EQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 407


>gi|108807598|ref|YP_651514.1| electron transport complex protein RnfC [Yersinia pestis Antiqua]
 gi|149365837|ref|ZP_01887872.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|165927361|ref|ZP_02223193.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938230|ref|ZP_02226789.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010764|ref|ZP_02231662.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|167400753|ref|ZP_02306259.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420227|ref|ZP_02311980.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167470481|ref|ZP_02335185.1| electron transport complex protein RnfC [Yersinia pestis FV-1]
 gi|218929340|ref|YP_002347215.1| electron transport complex protein RnfC [Yersinia pestis CO92]
 gi|229897672|ref|ZP_04512828.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898317|ref|ZP_04513464.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|294503723|ref|YP_003567785.1| cell envelope integrity inner membrane protein TolA [Yersinia
           pestis Z176003]
 gi|122979618|sp|Q1C7K3|RNFC_YERPA RecName: Full=Electron transport complex protein rnfC
 gi|108779511|gb|ABG13569.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia pestis
           Antiqua]
 gi|115347951|emb|CAL20873.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia pestis
           CO92]
 gi|149292250|gb|EDM42324.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|165913891|gb|EDR32509.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920627|gb|EDR37875.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990466|gb|EDR42767.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166961922|gb|EDR57943.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049606|gb|EDR61014.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|229688607|gb|EEO80676.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694009|gb|EEO84058.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|262362157|gb|ACY58878.1| electron transport complex protein RnfC [Yersinia pestis D106004]
 gi|262365490|gb|ACY62047.1| electron transport complex protein RnfC [Yersinia pestis D182038]
 gi|294354182|gb|ADE64523.1| cell envelope integrity inner membrane protein TolA [Yersinia
           pestis Z176003]
          Length = 620

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 92/299 (30%), Gaps = 62/299 (20%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D  +M+     +I G  I    +      I +         +LQ 
Sbjct: 167 TLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQR 226

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+               G D DI +      Y  G    L + L GK+          ++
Sbjct: 227 ALR--------------GQD-DIHLRVVPTKYPSGGAKQLTKILTGKEV---PFGKHSSS 268

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           +G+      + NV ++  +   +                  ++ +++G  ++ P      
Sbjct: 269 IGV-----LMQNVGTVVAIKRAVIDDEPLI----------ERVVTLTGDALSSPGNFWAR 313

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG 316
           +      L++           N   VI GG  +   LP+  +    +    L    + +G
Sbjct: 314 IGTPVLYLLKLAG----FKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMG 369

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            +                        +SC +C  C +      + + +    +G   ++
Sbjct: 370 LSEP---------------------EQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 407


>gi|255017212|ref|ZP_05289338.1| hypothetical protein LmonF_04473 [Listeria monocytogenes FSL
           F2-515]
          Length = 169

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 29/167 (17%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K+S           YL++NA E EP    D  +MR+     I+   +    +GA 
Sbjct: 20  FPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHAVETIKAIEMVKSQVGAE 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I  +  +  E  +L++A+ E               D  + +H     Y  G+E  ++
Sbjct: 73  FAVIATKRYYTEEIAALRSAITEL--------------DASVTIHEMDNVYPTGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
             + G+   P      P  VG       V+NV ++  V   ++  A 
Sbjct: 119 FEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIQDDAP 157


>gi|51596491|ref|YP_070682.1| electron transport complex protein RnfC [Yersinia
           pseudotuberculosis IP 32953]
 gi|186895541|ref|YP_001872653.1| electron transport complex protein RnfC [Yersinia
           pseudotuberculosis PB1/+]
 gi|226735457|sp|B2K4K0|RNFC_YERPB RecName: Full=Electron transport complex protein rnfC
 gi|51589773|emb|CAH21403.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186698567|gb|ACC89196.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 659

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 92/299 (30%), Gaps = 62/299 (20%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D  +M+     +I G  I    +      I +         +LQ 
Sbjct: 167 TLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQR 226

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+               G D DI +      Y  G    L + L GK+          ++
Sbjct: 227 ALR--------------GQD-DIHLRVVPTKYPSGGAKQLTKILTGKEV---PFGKHSSS 268

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           +G+      + NV ++  +   +                  ++ +++G  ++ P      
Sbjct: 269 IGV-----LMQNVGTVVAIKRAVIDDEPLI----------ERVVTLTGDALSSPGNFWAR 313

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG 316
           +      L++           N   VI GG  +   LP+  +    +    L    + +G
Sbjct: 314 IGTPVLYLLKLAG----FKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMG 369

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            +                        +SC +C  C +      + + +    +G   ++
Sbjct: 370 LSEP---------------------EQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 407


>gi|22125975|ref|NP_669398.1| electron transport complex protein RnfC [Yersinia pestis KIM 10]
 gi|108811874|ref|YP_647641.1| electron transport complex protein RnfC [Yersinia pestis Nepal516]
 gi|166210950|ref|ZP_02236985.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167424927|ref|ZP_02316680.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229894929|ref|ZP_04510107.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|229902176|ref|ZP_04517297.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|270490649|ref|ZP_06207723.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia
           pestis KIM D27]
 gi|123073407|sp|Q1CIY9|RNFC_YERPN RecName: Full=Electron transport complex protein rnfC
 gi|21958919|gb|AAM85649.1|AE013811_2 putative membrane protein [Yersinia pestis KIM 10]
 gi|108775522|gb|ABG18041.1| iron-sulfur binding NADH dehydrogenase [Yersinia pestis Nepal516]
 gi|166208130|gb|EDR52610.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167056114|gb|EDR65892.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681072|gb|EEO77167.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|229702024|gb|EEO90045.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|270339153|gb|EFA49930.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia
           pestis KIM D27]
 gi|320014908|gb|ADV98479.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 659

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 92/299 (30%), Gaps = 62/299 (20%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D  +M+     +I G  I    +      I +         +LQ 
Sbjct: 167 TLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQR 226

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+               G D DI +      Y  G    L + L GK+          ++
Sbjct: 227 ALR--------------GQD-DIHLRVVPTKYPSGGAKQLTKILTGKEV---PFGKHSSS 268

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           +G+      + NV ++  +   +                  ++ +++G  ++ P      
Sbjct: 269 IGV-----LMQNVGTVVAIKRAVIDDEPLI----------ERVVTLTGDALSSPGNFWAR 313

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG 316
           +      L++           N   VI GG  +   LP+  +    +    L    + +G
Sbjct: 314 IGTPVLYLLKLAG----FKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMG 369

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            +                        +SC +C  C +      + + +    +G   ++
Sbjct: 370 LSEP---------------------EQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 407


>gi|162421102|ref|YP_001606696.1| electron transport complex protein RnfC [Yersinia pestis Angola]
 gi|226735458|sp|A9R8U6|RNFC_YERPG RecName: Full=Electron transport complex protein rnfC
 gi|162353917|gb|ABX87865.1| electron transport complex protein RnfC [Yersinia pestis Angola]
          Length = 659

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 92/299 (30%), Gaps = 62/299 (20%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D  +M+     +I G  I    +      I +         +LQ 
Sbjct: 167 TLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQR 226

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+               G D DI +      Y  G    L + L GK+          ++
Sbjct: 227 ALR--------------GQD-DIHLRVVPTKYPSGGAKQLTKILTGKEV---PFGKHSSS 268

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           +G+      + NV ++  +   +                  ++ +++G  ++ P      
Sbjct: 269 IGV-----LMQNVGTVVAIKRAVIDDEPLI----------ERVVTLTGDALSSPGNFWAR 313

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG 316
           +      L++           N   VI GG  +   LP+  +    +    L    + +G
Sbjct: 314 IGTPVLYLLKLAG----FKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMG 369

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            +                        +SC +C  C +      + + +    +G   ++
Sbjct: 370 LSEP---------------------EQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 407


>gi|257469186|ref|ZP_05633280.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
 gi|317063434|ref|ZP_07927919.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313689110|gb|EFS25945.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 644

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 56/153 (36%), Gaps = 11/153 (7%)

Query: 238 GTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQ 297
           G+++  ++G VN P  +    + T +++I    G       +  A   G      L    
Sbjct: 31  GSRMVVVAGRVNNPGVIAIPENATLNDVIGLAGG--IKNKKSFKAAQFGLPFGGFLTKKS 88

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK----HESCGQCTPCRE 353
           +   I     L   G       +I++     I+        F           Q T  + 
Sbjct: 89  LDKVIDF--SLFPEGI---DRNIIILSEEDCIVSFAKFYVEFLMSKIERSEYIQYTSVQN 143

Query: 354 GTGWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
               + R+++R+ KG A  R+I LL  +S+ I+
Sbjct: 144 EIERIWRILDRISKGKANMRDIYLLRCLSETIK 176


>gi|45441842|ref|NP_993381.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|45436704|gb|AAS62258.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 659

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 92/299 (30%), Gaps = 62/299 (20%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D  +M+     +I G  I    +      I +         +LQ 
Sbjct: 167 TLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQR 226

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+               G D DI +      Y  G    L + L GK+          ++
Sbjct: 227 ALR--------------GQD-DIHLRVVPTKYPSGGAKQLTKILTGKEV---PFGKHSSS 268

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           +G+      + NV ++  +   +                  ++ +++G  ++ P      
Sbjct: 269 IGV-----LMQNVGTVVAIKRAVIDDEPLI----------ERVVTLTGDALSSPGNFWAR 313

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG 316
           +      L++           N   VI GG  +   LP+  +    +    L    + +G
Sbjct: 314 IGTPVLYLLKLAG----FKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMG 369

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            +                        +SC +C  C +      + + +    +G   ++
Sbjct: 370 LSEP---------------------EQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 407


>gi|153947990|ref|YP_001400871.1| electron transport complex protein RnfC [Yersinia
           pseudotuberculosis IP 31758]
 gi|166991049|sp|A7FHZ3|RNFC_YERP3 RecName: Full=Electron transport complex protein rnfC
 gi|152959485|gb|ABS46946.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia
           pseudotuberculosis IP 31758]
          Length = 698

 Score = 75.4 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 92/299 (30%), Gaps = 62/299 (20%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D  +M+     +I G  I    +      I +         +LQ 
Sbjct: 167 TLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQR 226

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+               G D DI +      Y  G    L + L GK+          ++
Sbjct: 227 ALR--------------GQD-DIHLRVVPTKYPSGGAKQLTKILTGKEV---PFGKHSSS 268

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           +G+      + NV ++  +   +                  ++ +++G  ++ P      
Sbjct: 269 IGV-----LMQNVGTVVAIKRAVIDDEPLI----------ERVVTLTGDALSSPGNFWAR 313

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG 316
           +      L++           N   VI GG  +   LP+  +    +    L    + +G
Sbjct: 314 IGTPVLYLLKLAG----FKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMG 369

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            +                        +SC +C  C +      + + +    +G   ++
Sbjct: 370 LSEP---------------------EQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 407


>gi|297745531|emb|CBI40696.3| unnamed protein product [Vitis vinifera]
          Length = 98

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query: 3  TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFST 62
           D+D IFTN+YGL    L  +M  G W     I+ KG DWI++E+K SGLRGRGG     
Sbjct: 24 KDEDCIFTNIYGLHDPFLKSAMKMGGWYKTGDIVLKGSDWIVSEMKESGLRGRGGVEVRN 83

Query: 63 GMK 65
          G++
Sbjct: 84 GVE 86


>gi|238752179|ref|ZP_04613660.1| Electron transport complex protein rnfC [Yersinia rohdei ATCC
           43380]
 gi|238709550|gb|EEQ01787.1| Electron transport complex protein rnfC [Yersinia rohdei ATCC
           43380]
          Length = 541

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 109/366 (29%), Gaps = 69/366 (18%)

Query: 12  LYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPK 71
              +         ++         L++ +  +++ +  +G+ G GGAGF T  K      
Sbjct: 74  CVHITPDGEDRWRAQ---QPWADYLQRDKLALLDRIHQAGIAGLGGAGFPTASKLQGGLS 130

Query: 72  VCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIR 131
                   L++NA E EP    D  +M+     ++ G  I    +      I +      
Sbjct: 131 G----VTTLIINAAECEPYITADDRLMQDHAEEVVTGIHILIHLVQPQQVLIGIEDNKPE 186

Query: 132 ERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRL 191
              +LQ A+                    I +      Y  G    L + L G++     
Sbjct: 187 AIAALQQALQGQDK---------------IQLRVVPTKYPSGGAKQLTKILTGQEV---P 228

Query: 192 KPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNY 250
                +++G+      + NV ++  +   +                  ++ +++G  +  
Sbjct: 229 FGKHSSSIGV-----LMQNVGTVVAIKRAIIDDEPLI----------ERVVTLTGDALAK 273

Query: 251 PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLK 309
           P      +      L+       +        VI GG  +   LP+  +    +    L 
Sbjct: 274 PGNFWARLGTPVSHLLALAGFQPQSQP----MVIMGGPLMGFTLPSLDVPIVKISNCILA 329

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVK 367
              + +G +                        ++C +C  C +      + + +    +
Sbjct: 330 PAEAEMGLSE---------------------AEQACIRCGLCVDACPAGLLPQQLYWFSR 368

Query: 368 GIAQKR 373
           G   ++
Sbjct: 369 GEEHEK 374


>gi|167759827|ref|ZP_02431954.1| hypothetical protein CLOSCI_02190 [Clostridium scindens ATCC 35704]
 gi|167662446|gb|EDS06576.1| hypothetical protein CLOSCI_02190 [Clostridium scindens ATCC 35704]
          Length = 610

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G G +   ++ ++ G A    +D++ + + +I  
Sbjct: 35  CPVDLSRAFLELCHAQTCGKCVPCRIGLGQLNHFIKDVLDGKATMETLDIMEQTALSIME 94

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
              CA+G  AA  +   +  +R    E I    RC 
Sbjct: 95  SADCAIGYEAANMVYKGLIGYRDDYVEHIKN-GRCT 129


>gi|237751584|ref|ZP_04582064.1| formate dehydrogenase [Helicobacter bilis ATCC 43879]
 gi|229372950|gb|EEO23341.1| formate dehydrogenase [Helicobacter bilis ATCC 43879]
          Length = 928

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 7/122 (5%)

Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKH--ESCGQCT 349
            LP  +        +  KE+ + +G   +++ D S DI++ +   +  Y++  +SCG+CT
Sbjct: 19  VLPQVKFFTKEPIENTQKEIKAFVGWDGIVIFDPSLDILQTLKIYAKQYQNYAQSCGRCT 78

Query: 350 PCREGTGWMMRVMERL-----VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGL 404
           P + G   +  ++E+L     V      ++I+ L EV + ++  + C +G     PI  +
Sbjct: 79  PGKYGGKVLYELLEKLQNYDYVSDCEALKDIEKLKEVCELMKATSKCEVGKTTPNPILQI 138

Query: 405 IK 406
           +K
Sbjct: 139 LK 140


>gi|227872438|ref|ZP_03990781.1| glutamate synthase (NADPH) small subunit [Oribacterium sinus F0268]
 gi|227841717|gb|EEJ52004.1| glutamate synthase (NADPH) small subunit [Oribacterium sinus F0268]
          Length = 611

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +         +            +SCG+CTPCR G G +  ++E ++ G A    +  + 
Sbjct: 27  IQASQPGLCPVDLAEAFVHVCHSQSCGKCTPCRVGLGQLEGLIESVLDGSADMDTLKTIE 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           + ++ I     CA+G  AA  +   I+ F     E + Q+ RC
Sbjct: 87  KTAEGIYNSADCAIGFEAAKMVLRGIRGFYEDYAEHV-QHGRC 128


>gi|330864200|emb|CBX74261.1| electron transport complex protein rnfC [Yersinia enterocolitica
           W22703]
          Length = 412

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 93/300 (31%), Gaps = 62/300 (20%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             L++NA E EP    D  +M+     ++ G  I  + +      I +         +LQ
Sbjct: 5   TTLIINAAECEPYITADDRLMQEHASEVVLGIQILMYLLQPQQVLIGIEDNKPEAIAALQ 64

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+               G D ++ +      Y  G    L + L GK+          +
Sbjct: 65  HALR--------------GQD-EMQLRVIPTKYPSGGAKQLTKILTGKEV---PFGKHSS 106

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEE 256
           ++G+      + NV ++  +   +                  ++ +++G  ++ P     
Sbjct: 107 SIGV-----LMQNVGTVVAIKRSIIDDEPLI----------ERVVTLTGDALSKPGNFWA 151

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGL 315
            +      L++      +        VI GG  +   LP+  +    +    L    + +
Sbjct: 152 RIGTPVLHLLKLAGFTPQNQP----MVIMGGPLMGFTLPSLDVPIVKISNCILAPTEAEM 207

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
           G +                        +SC +C  C +      + + +    +G   ++
Sbjct: 208 GLSEP---------------------EQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 246


>gi|318605660|emb|CBY27158.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 618

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 96/318 (30%), Gaps = 66/318 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K              L++NA E EP    D  +M+     ++ G  I  + +   
Sbjct: 152 FPTASKLQGGLSS----VTTLIINAAECEPYITADDRLMQEHASEVVLGIQILMYLLQPQ 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +LQ A+               G D ++ +      Y  G    L 
Sbjct: 208 QVLIGIEDNKPEAIAALQHALR--------------GQD-EMQLRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          +++G+      + NV ++  +   +                  
Sbjct: 253 KILTGKEV---PFGKHSSSIGV-----LMQNVGTVVAIKRSIIDDEPLI----------E 294

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  ++ P      +      L++      +        VI GG  +   LP+  
Sbjct: 295 RVVTLTGDALSKPGNFWARIGTPVLHLLKLAGFTPQNQP----MVIMGGPLMGFTLPSLD 350

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG- 356
           +    +    L    + +G +                        +SC +C  C +    
Sbjct: 351 VPIVKISNCILAPTEAEMGLSEP---------------------EQSCIRCGLCVDACPA 389

Query: 357 -WMMRVMERLVKGIAQKR 373
             + + +    +G   ++
Sbjct: 390 GLLPQQLYWFSRGEEHEK 407


>gi|23014793|ref|ZP_00054592.1| COG1905: NADH:ubiquinone oxidoreductase 24 kD subunit
           [Magnetospirillum magnetotacticum MS-1]
          Length = 257

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/63 (52%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 34  KILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKV---CSDRPHYLVVNADESEPG 90
           K L K    +++ +K SGLRGRGGAGFSTG KW F            HY+V NADE EPG
Sbjct: 196 KAL-KSPQEVLDAIKESGLRGRGGAGFSTGQKWDFCRAAVGTGPHAAHYVVCNADEGEPG 254

Query: 91  TCK 93
           T K
Sbjct: 255 TFK 257


>gi|332161837|ref|YP_004298414.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666067|gb|ADZ42711.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 618

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 96/318 (30%), Gaps = 66/318 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K              L++NA E EP    D  +M+     ++ G  I  + +   
Sbjct: 152 FPTASKLQGGLSS----VTTLIINAAECEPYITADDRLMQEHASEVVLGIQILMYLLQPQ 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +LQ A+               G D ++ +      Y  G    L 
Sbjct: 208 QVLIGIEDNKPEAIAALQHALR--------------GQD-EMQLRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          +++G+      + NV ++  +   +                  
Sbjct: 253 KILTGKEV---PFGKHSSSIGV-----LMQNVGTVVAIKRSIIDDEPLI----------E 294

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  ++ P      +      L++      +        VI GG  +   LP+  
Sbjct: 295 RVVTLTGDALSKPGNFWARIGTPVLHLLKLAGFTPQNQP----MVIMGGPLMGFTLPSLD 350

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG- 356
           +    +    L    + +G +                        +SC +C  C +    
Sbjct: 351 VPIVKISNCILAPTEAEMGLSEP---------------------EQSCIRCGLCVDACPA 389

Query: 357 -WMMRVMERLVKGIAQKR 373
             + + +    +G   ++
Sbjct: 390 GLLPQQLYWFSRGEEHEK 407


>gi|157375179|ref|YP_001473779.1| electron transport complex protein RnfC [Shewanella sediminis
           HAW-EB3]
 gi|157317553|gb|ABV36651.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           sediminis HAW-EB3]
          Length = 842

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 104/334 (31%), Gaps = 63/334 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K +      +     L++NA E EP    D  +MR     +  G  I    +   
Sbjct: 156 FPTHIKLN-----PASDIELLIINAIECEPYITADDMLMREHSDAICLGIAIIHRLLQPK 210

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I V        E +  A++       L           + +      Y  G E  L+
Sbjct: 211 RLIIAVEDNKPEAIEEMHHALNRSQ----LPKEG-------VRITSVPTLYPSGGEKQLI 259

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G++         PA +G+      V N+ +   +   + R                
Sbjct: 260 QILTGEEV---PSGSIPAQLGI-----VVQNIATSYAITDAVLRSYPLI----------E 301

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G + + P      +      L+ +              VI GG          M
Sbjct: 302 RVVTVTGNNTSSPGNYWVPIGTPISHLLTQTGFRGNETDK----VIIGGP--------MM 349

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A+ +       GS       +++  S ++  A   L+       C +C  C +     
Sbjct: 350 GYALYNDSAPIIKGSNC-----LLLPDSNELAPAAKELA-------CIRCGECAQVCPAQ 397

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
           +   +      A++ +  + + ++  IE    C 
Sbjct: 398 LLPQQLFWHAKAKEYDKAVNFNLADCIE----CG 427


>gi|296387989|ref|ZP_06877464.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PAb1]
          Length = 656

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 114/366 (31%), Gaps = 65/366 (17%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
            +    ++  ++A+G+ G GGAGF T  K   +    +++ H LVVN  E EP    D  
Sbjct: 121 AESPLALLERIRAAGIGGLGGAGFPTAAK---LAARPAEKIHTLVVNGAECEPYISADDL 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      + +  +      +L A                  
Sbjct: 178 LMRERATQVLGGIDILVQILCPEEVLVGIEDDKPEAIAALGA---ALGERPY-------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 +      Y  G E  L++ L G++         PA++G+        NV ++A 
Sbjct: 227 -----RIVALPTRYPSGGERQLIQLLTGREVPADG---LPADIGI-----LCQNVGTLAA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   +  G           +R T L    G +  P  VE  +     EL+          
Sbjct: 274 VHDAVVLGRPLI-------SRITTLAG--GALERPMNVEALIGTPVHELLAFAG----LA 320

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVM-------DRSTDI 329
              L  V+ GG  +           I   + L    +      V  M             
Sbjct: 321 EGRLQRVLMGGPMMGFALPDLSVPLIKTCNCLLAGDATELPEPVPAMPCIRCGDCARVCP 380

Query: 330 IKAIWRLSVFYK----HES-----------CGQCTP-CREGTGWMMRVMERLVKGIAQKR 373
           +  + +   F+     HE            CG C   C  G   +     R  K   +++
Sbjct: 381 VSLLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCPSGIPLVQYY--RASKAEIREQ 438

Query: 374 EIDLLY 379
              LL 
Sbjct: 439 RQKLLK 444


>gi|289809590|ref|ZP_06540219.1| NADH dehydrogenase I subunit F [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 76

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 365 LVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           L +G  Q  +I+ L ++ + +  G+T CA    A  P+Q  IK FR   E  I Q
Sbjct: 2   LERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQ 56


>gi|320538845|ref|ZP_08038521.1| putative fused 4Fe-4S ferredoxin-type protein/conserved protein
           [Serratia symbiotica str. Tucson]
 gi|320031005|gb|EFW13008.1| putative fused 4Fe-4S ferredoxin-type protein/conserved protein
           [Serratia symbiotica str. Tucson]
          Length = 617

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 108/356 (30%), Gaps = 72/356 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +        L++NA E EP    D  +M+     +IEG  I    +   
Sbjct: 152 FPTASKL----QSGISSVETLILNAAECEPYITADDRLMQEHADQIIEGTQILRHVLQPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+      G  G          I +      Y  G    L 
Sbjct: 208 VTLIGIEDNKPEAIAALKQAL-----HGQPG----------IALRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          + +G+      + NV +   +   +  G               
Sbjct: 253 KILTGKEV---PHGKHSSAIGV-----LMQNVGTTFAIKRAIVNGEPLI----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ ++SG  ++ P  +   +      L++      +        V+ GG  +        
Sbjct: 295 RVVTLSGEALSKPGNLWARIGTPVQHLLDYAGFQPQEQP----MVVMGGPLMGF------ 344

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG- 356
                    L  +        V ++  S  I+            E +C +C  C +    
Sbjct: 345 --------TLPALN-------VPIVKISNCILAPSLNEMSPQVPEQACIRCGLCVDACPA 389

Query: 357 -WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPL 411
             + + +    +G   + +    + +S  IE    CA    +  P   L++ +R  
Sbjct: 390 GLLPQQLYWFSRGK--EHDKARNHNLSDCIECGA-CAFVCPSNIP---LVQYYRQE 439


>gi|227326162|ref|ZP_03830186.1| NADH dehydrogenase I subunit F [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 85

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 365 LVKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           L KG  Q  +I+ L ++ + +  G T CA    A  P+Q  IK FR   E  I + 
Sbjct: 10  LEKGEGQPGDIETLEQLCRFLGPGNTFCAHAPGAVEPLQSAIKYFREEFEAGISKQ 65


>gi|297521229|ref|ZP_06939615.1| electron transport complex protein RnfC [Escherichia coli OP50]
          Length = 394

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 93/325 (28%), Gaps = 72/325 (22%)

Query: 93  KDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSN 152
            D  +M+     ++EG  I +  +      I +     +    L+A + +          
Sbjct: 1   ADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLADSN-------- 52

Query: 153 SKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVE 212
                  DI +      Y  G    L   L GK+          +++G+      + NV 
Sbjct: 53  -------DISLRVIPTKYPSGGAKQLTYILTGKQV---PHGGRSSDIGV-----LMQNVG 97

Query: 213 SIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCG 271
           +   V   +  G               ++ +++G  +  P  V   +      L+     
Sbjct: 98  TAYAVKRAVIDGEPII----------ERVVTLTGEAIARPGNVWARLGTPVRHLLNDAGF 147

Query: 272 GIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                      VI GG  +                              +V   +  +  
Sbjct: 148 CPSAD----QMVIMGGPLMGF--TLPWLDVP------------------VVKITNCLLAP 183

Query: 332 AIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRT 389
           +   L    + +SC +C+ C +      + + +    KG     +    + ++  IE   
Sbjct: 184 SANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQH--DKATTHNIADCIE--- 238

Query: 390 ICALGDAAAWPIQG---LIKNFRPL 411
            C    A AW       L++ FR  
Sbjct: 239 -CG---ACAWVCPSNIPLVQYFRQE 259


>gi|300022058|ref|YP_003754669.1| Soluble ligand binding domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523879|gb|ADJ22348.1| Soluble ligand binding domain protein [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 386

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 93/257 (36%), Gaps = 29/257 (11%)

Query: 17  GKSLSDSMSRGHWDNVDKILEKGR--DWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
            +S     + G +  +   L K R  + ++  + ++ +R    A    G++   +    S
Sbjct: 93  AESFEQYCASGGYGVLKSCLAKRRSLESVLCALSSAAVRLFEKADAPFGVRIRELRARYS 152

Query: 75  DRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERE 134
                +++  DE  PG       +   P  ++EG +I + A+GA    +           
Sbjct: 153 TVKIVMLI--DEHGPGEMAQSFFLAQFPQRVLEGLLIVAHALGAPEIVLCYS-------R 203

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPP 194
             ++A  + Y   L   N  LG +V   +       I  E  +  +SL         +  
Sbjct: 204 RHESACRKFYKEFLFLKNRGLGANVRFTL-------IDAESQSEQQSL--------RQIC 248

Query: 195 FPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV 254
             +N         + + E +A VP I+  G +     G   +    L+++ G V+ P   
Sbjct: 249 LTSNSEEPSASALIADPEFVAWVPEIVATGDALD---GDAASGPQTLYALLGCVSRPGIY 305

Query: 255 EESMSITFDELIEKHCG 271
           +  +  T  ELI    G
Sbjct: 306 KAPVFSTVHELIALAGG 322


>gi|150388499|ref|YP_001318548.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149948361|gb|ABR46889.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Alkaliphilus metalliredigens QYMF]
          Length = 391

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 77/235 (32%), Gaps = 42/235 (17%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K +   K       Y++VN  E EP    +  +M   P  +I G         A 
Sbjct: 95  FPAHIKLNTDLK-----GGYVIVNGAECEPLLAHNLKLMEESPEVIIRGIKYIMEITNAA 149

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I V+ ++ +    L+ A              + G    I V      Y  G+E  ++
Sbjct: 150 KGYIAVKSKYKKAVRGLKKACT-----------IETG----IEVKFLPDIYPSGDERVII 194

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L G   +P      P   G       V NVE+I  +   +     +           T
Sbjct: 195 RELLGVVLEP---GKLPLEAG-----AVVQNVETIKHIVNAIELRKPFI----------T 236

Query: 240 KLFSISGHVN--YPCTV--EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
           K  +++G V       V  + ++     + IE   G +    +  L     GS+ 
Sbjct: 237 KDITVAGRVQSGRKGKVFLDVALGEPVGKYIELCGGYVMPYGEITLGGPFTGSAG 291


>gi|323144839|ref|ZP_08079408.1| electron transport complex, RnfABCDGE type, C subunit
           [Succinatimonas hippei YIT 12066]
 gi|322415364|gb|EFY06129.1| electron transport complex, RnfABCDGE type, C subunit
           [Succinatimonas hippei YIT 12066]
          Length = 633

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
           + +        D ++  ++  G+ G GGA F T  K     K   +   + +VN  E EP
Sbjct: 124 EPLKDWETSDADTLLKRIRDYGVEGLGGAQFQTAAKLGSSIKGNRNCNIF-IVNGCECEP 182

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     ++ G  +    +      I +        +    A+         
Sbjct: 183 VATCDDRLMQERAKDIVSGIKVIKRILKPKAVIIAIEDNKTNAIK----AIKNAAKD--- 235

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                     + IV      Y  G    L++ + G +          ++ G+      V+
Sbjct: 236 ----------EAIVRVLPTLYPSGAARNLIKIVTGIEI---PYSEHTSDCGI-----VVD 277

Query: 210 NVESIAVVPTILRRG 224
           NVE++  V   +  G
Sbjct: 278 NVETVFAVKQAVIDG 292


>gi|210610169|ref|ZP_03288286.1| hypothetical protein CLONEX_00472 [Clostridium nexile DSM 1787]
 gi|210152599|gb|EEA83605.1| hypothetical protein CLONEX_00472 [Clostridium nexile DSM 1787]
          Length = 202

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 328 DIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEG 387
             +            ++CG+C PCR G G +   ++ ++ G A    +D++ + + +I  
Sbjct: 77  CPVDMARAFLELCHAQTCGKCVPCRIGLGQLNGFIKDVLDGNATMETLDIMEQTALSIME 136

Query: 388 RTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
              CA+G  AA  +   +  +R    E I    RC 
Sbjct: 137 SADCAIGYEAAHTVYKGLIGYRDDYVEHIKN-GRCT 171


>gi|107103021|ref|ZP_01366939.1| hypothetical protein PaerPA_01004090 [Pseudomonas aeruginosa PACS2]
          Length = 774

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 108/335 (32%), Gaps = 51/335 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
            +    ++  ++A+G+ G GGAGF T  K   +    +++ H LVVN  E EP    D  
Sbjct: 121 AESPLALLERIRAAGIGGLGGAGFPTAAK---LAARPAEKIHTLVVNGAECEPYISADDL 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      + +  +      +L AA+ E              
Sbjct: 178 LMRERATQVLGGIDILVQILCPEEVLVGIEDDKPEAIAALGAALGERPY----------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 +      Y  G E  L++ L G++         PA++G+        NV ++A 
Sbjct: 227 -----RIVALPTRYPSGGERQLIQLLTGREVPADG---LPADIGI-----LCQNVGTLAA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   +  G           +R T L    G +  P  VE  +     EL+          
Sbjct: 274 VHDAVVLGRPLI-------SRITTLAG--GALERPMNVEALIGTPVHELLAFAGLAEGRL 324

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST---DIIKAI 333
              L+     G ++P L    ++       G          A   +          +  +
Sbjct: 325 ERVLMGGPMMGFALPDLSVPLIKTCNCLLAGDATELPEPVPAMPCIRCGDCAQVCPVSLL 384

Query: 334 WRLSVFYK----HES--------CGQCTPCREGTG 356
            +   F+     HE         C +C  C     
Sbjct: 385 PQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|218890264|ref|YP_002439128.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           LESB58]
 gi|218770487|emb|CAW26252.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
          Length = 774

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 108/335 (32%), Gaps = 51/335 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
            +    ++  ++A+G+ G GGAGF T  K   +    +++ H LVVN  E EP    D  
Sbjct: 121 AESPLALLERIRAAGIGGLGGAGFPTAAK---LAARPAEKIHTLVVNGAECEPYISADDL 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      + +  +      +L AA+ E              
Sbjct: 178 LMRERATQVLGGIDILVQILCPEEVLVGIEDDKPEAIAALGAALGERPY----------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 +      Y  G E  L++ L G++         PA++G+        NV ++A 
Sbjct: 227 -----RIVALPTRYPSGGERQLIQLLTGREVPADG---LPADIGI-----LCQNVGTLAA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   +  G           +R T L    G +  P  VE  +     EL+          
Sbjct: 274 VHDAVVLGRPLI-------SRITTLAG--GALERPMNVEALIGTPVHELLAFAGLAEGRL 324

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST---DIIKAI 333
              L+     G ++P L    ++       G          A   +          +  +
Sbjct: 325 ERVLMGGPMMGFALPDLSVPLIKTCNCLLAGDATELPEPVPAMPCIRCGDCAQVCPVSLL 384

Query: 334 WRLSVFYK----HES--------CGQCTPCREGTG 356
            +   F+     HE         C +C  C     
Sbjct: 385 PQQLHFFALGNEHEQLLAHNLFDCIECGACAYVCP 419


>gi|15598687|ref|NP_252181.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PAO1]
 gi|17369004|sp|Q9HYB8|RNFC_PSEAE RecName: Full=Electron transport complex protein rnfC
 gi|9949637|gb|AAG06879.1|AE004770_4 probable ferredoxin [Pseudomonas aeruginosa PAO1]
          Length = 774

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 108/335 (32%), Gaps = 51/335 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
            +    ++  ++A+G+ G GGAGF T  K   +    +++ H LVVN  E EP    D  
Sbjct: 121 AESPLALLERIRAAGIGGLGGAGFPTAAK---LAARPAEKIHTLVVNGAECEPYISADDL 177

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           +MR     ++ G  I    +      + +  +      +L AA+ E              
Sbjct: 178 LMRERATQVLGGIDILVQILCPEEVLVGIEDDKPEAIAALGAALGERPY----------- 226

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAV 216
                 +      Y  G E  L++ L G++         PA++G+        NV ++A 
Sbjct: 227 -----RIVALPTRYPSGGERQLIQLLTGREVPADG---LPADIGI-----LCQNVGTLAA 273

Query: 217 VPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGG 276
           V   +  G           +R T L    G +  P  VE  +     EL+          
Sbjct: 274 VHDAVVLGRPLI-------SRITTLAG--GALERPMNVEALIGTPVHELLAFAGLAEGRL 324

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST---DIIKAI 333
              L+     G ++P L    ++       G          A   +          +  +
Sbjct: 325 ERVLMGGPMMGFALPDLSVPLIKTCNCLLAGDATELPEPVPAMPCIRCGDCAQVCPVSLL 384

Query: 334 WRLSVFYK----HES--------CGQCTPCREGTG 356
            +   F+     HE         C +C  C     
Sbjct: 385 PQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP 419


>gi|238760426|ref|ZP_04621565.1| Electron transport complex protein rnfC [Yersinia aldovae ATCC
           35236]
 gi|238701378|gb|EEP93956.1| Electron transport complex protein rnfC [Yersinia aldovae ATCC
           35236]
          Length = 536

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 95/317 (29%), Gaps = 64/317 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +   +  + L++NA E EP    D  +M+     ++ G  I    +   
Sbjct: 128 FPTASKL----QSGLNGVNTLIINAAECEPYITADDKLMQDHADEVVSGIRILIHLLQPK 183

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +     +   +L+ A+                   DI +      Y  G    L 
Sbjct: 184 QVLIGIEDNKPQAITALRHALRI---------------HEDIQLRVVPTKYPSGGAKQLT 228

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          + +G+      ++NV ++  +   +                  
Sbjct: 229 KLLTGKEV---PFGKHSSAIGV-----LMHNVGTVVAIKRAIIDDEPLI----------E 270

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  ++ P      +      L+       +        VI GG  +        
Sbjct: 271 RVVTLTGDALSQPGNFWARIGTPVRHLLALAGFQPQSQP----MVIMGGPLMGFTLPS-- 324

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-- 356
               +                V + +     ++A   LS     +SC +C  C +     
Sbjct: 325 LDVPI----------------VKISNCILAPVEAEMGLSEP--EQSCIRCGLCVDACPAG 366

Query: 357 WMMRVMERLVKGIAQKR 373
            + + +    +G   ++
Sbjct: 367 LLPQQLYWFSRGDEHEK 383


>gi|270261662|ref|ZP_06189935.1| transporter [Serratia odorifera 4Rx13]
 gi|270045146|gb|EFA18237.1| transporter [Serratia odorifera 4Rx13]
          Length = 801

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 94/318 (29%), Gaps = 66/318 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +   +    L++NA E EP    D  +MR     +IEG  I    +   
Sbjct: 152 FPTASKL----QGGMNGVETLILNAAECEPYITADDRLMREHADQIIEGTQILRHLLQPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        E+L+ A+ +                  I +      Y  G    L 
Sbjct: 208 VTLIGIEDNKPEAIEALKLALRD---------------QPGIALRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          + +G+      + NV +   +   +  G               
Sbjct: 253 KILLGKEV---PHGKHSSAIGV-----LMQNVGTAFAIKRAIVDGEPLI----------E 294

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  ++ P  +   +      L+                V+ GG  +        
Sbjct: 295 RVVTLTGDALSQPGNLWARIGTPVQHLLNFAG----FQPQAQQMVVMGGPLMGF------ 344

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG- 356
                    L  +        V ++  S  I+          + E SC +C  C +    
Sbjct: 345 --------TLPALN-------VPIVKISNCILAPSVNEMAPQEPEQSCIRCGLCVDACPA 389

Query: 357 -WMMRVMERLVKGIAQKR 373
             + + +    +G   ++
Sbjct: 390 GLLPQQLYWFSRGEEHEK 407


>gi|256826477|ref|YP_003150436.1| putative glutamate synthase (NADPH) small subunit [Cryptobacterium
           curtum DSM 15641]
 gi|256582620|gb|ACU93754.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
           [Cryptobacterium curtum DSM 15641]
          Length = 612

 Score = 73.5 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 42/99 (42%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V         I            ++CG+C PCR+G   + R+++++V   A    +  + 
Sbjct: 27  VQTTPPGMCPIALQLSFLQACGAQTCGKCVPCRDGIPQLARLLDQVVTCHATTETLIQIR 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            ++++I   + CA+G  A   +   ++ F    E  + Q
Sbjct: 87  ALAQSIRDTSDCAIGYQAGQGVLDGLEEFADEYESHLSQ 125


>gi|170024243|ref|YP_001720748.1| electron transport complex protein RnfC [Yersinia
           pseudotuberculosis YPIII]
 gi|226735459|sp|B1JKN4|RNFC_YERPY RecName: Full=Electron transport complex protein rnfC
 gi|169750777|gb|ACA68295.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia
           pseudotuberculosis YPIII]
          Length = 698

 Score = 73.5 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 91/299 (30%), Gaps = 62/299 (20%)

Query: 79  YLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQA 138
            L++NA E EP    D  +M+     +I G  I    +      I +         +LQ 
Sbjct: 167 TLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQR 226

Query: 139 AVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPAN 198
           A+      G  G          I +      Y  G    L + L GK+          ++
Sbjct: 227 ALR-----GQDG----------IHLRVVPTKYPSGGAKQLTKILTGKEV---PFGKHSSS 268

Query: 199 VGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEES 257
           +G+      + NV ++  +   +                  ++ +++G  ++ P      
Sbjct: 269 IGV-----LMQNVGTVVAIKRAVIDDEPLI----------ERVVTLTGDALSSPGNFWAR 313

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLG 316
           +      L++           N   VI GG  +   LP+  +    +    L    + +G
Sbjct: 314 IGTPVLYLLKLAG----FKPQNPPMVIMGGPLMGFTLPSLDVPIVKISNCILAPAETEMG 369

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
            +                        +SC +C  C +      + + +    +G   ++
Sbjct: 370 LSEP---------------------EQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEK 407


>gi|302335790|ref|YP_003800997.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Olsenella uli DSM 7084]
 gi|301319630|gb|ADK68117.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Olsenella uli DSM 7084]
          Length = 355

 Score = 73.5 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 24/200 (12%)

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
           G +W  G       GTK   + G  N P  VE   + T   L+           + L AV
Sbjct: 98  GEAWLCGQD-----GTKRVWLEGA-NDP--VEVDATTTAAGLL----SVTAVPTEGLRAV 145

Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
             G      L  G++   +            L    + V   +  +  A+  ++  +  E
Sbjct: 146 YLGYPQSRFLVPGELDEPME-----------LSCDYMCVYTDANCMANALHEIATTFHRE 194

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQG 403
            CG+C    EG   +  ++   V    +  ++DL+ ++   +  +++C LG   A  +Q 
Sbjct: 195 CCGRCVFGYEGGYQLETILGDAVGKRGRMGDLDLMRDLCPTMSTQSLCELGRIMARTVQE 254

Query: 404 LIKNFRPLIEERIDQYHRCN 423
            I  F   ++  + +   C 
Sbjct: 255 GIDLFGDELDRHVSK-RSCP 273


>gi|293396260|ref|ZP_06640539.1| electron transport complex protein RnfC [Serratia odorifera DSM
           4582]
 gi|291421240|gb|EFE94490.1| electron transport complex protein RnfC [Serratia odorifera DSM
           4582]
          Length = 558

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 94/318 (29%), Gaps = 66/318 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +  +     L++NA E EP    D  +M+     +++G  I    +   
Sbjct: 152 FPTASKL----QGGAHGVETLILNAAECEPYITADDRLMQEHADQILQGTEILRHLLQPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +     +   +L+ A+ E                  I +      Y  G    L 
Sbjct: 208 TTLIGIEDNKPQAIAALELALRE---------------HPHIALRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          + +G+      + NV +   +   +  G               
Sbjct: 253 KILTGKEV---PHGKHSSAIGV-----LMQNVGTAFAIKRAIIDGEPLI----------E 294

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  ++ P  +   +    + L+                V+ GG  +        
Sbjct: 295 RVVTLTGDALSQPGNLWARIGTPVEHLLAFAG----FQPQPQQMVVMGGPLMGF------ 344

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-SCGQCTPCREGTG- 356
                    L  +        V ++  S  ++          + E SC +C  C +    
Sbjct: 345 --------TLPALN-------VPIVKISNCLLAPTVDEMAPQEPEQSCIRCGLCVDACPA 389

Query: 357 -WMMRVMERLVKGIAQKR 373
             + + +    +G    +
Sbjct: 390 GLLPQQLYWFSRGQEHDK 407


>gi|220904638|ref|YP_002479950.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868937|gb|ACL49272.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 441

 Score = 73.1 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 92/309 (29%), Gaps = 62/309 (20%)

Query: 73  CSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRE 132
                  ++VN    EP    D  +M  +   ++ G        GA+   + ++G+    
Sbjct: 28  ADATAQTVLVNGASCEPLLMSDPYLMEEQVDVMLRGLEAMMDCTGANRGVVCLKGKHAAA 87

Query: 133 RESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLK 192
            +S++ AV                    +        Y  G+E  ++  + G     R  
Sbjct: 88  MKSVREAVARRGQG-------------RLEAFEMGDFYPAGDEQVMVYEVLGGIVPERG- 133

Query: 193 PPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC 252
              P  +G       V+NVES+  +   L                  +  ++   V  P 
Sbjct: 134 --IPLQIG-----AVVSNVESLFNIAHALD-----------GKPVTHRYLTVGCEVVRPM 175

Query: 253 TVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMG 312
            V   +     E++    G     +     V+ GG  +  +     +             
Sbjct: 176 VVRVPVGTRVAEVLNFAGGTTISEYR----VVDGGPMMGRVLPDADQPVT---------- 221

Query: 313 SGLGTAAVIVMDRSTDIIKAIWRLSVF-----YKHESCGQCTPCRE-------GTGWMMR 360
               T+ ++V+    +++    ++          +  C QC+ C +       G      
Sbjct: 222 --KTTSGLLVLPPDHNVVN--RKVMDPHVVKRLTNTVCCQCSQCTDLCPRNLLGHKLHPH 277

Query: 361 VMERLVKGI 369
            + R++ G 
Sbjct: 278 KLMRVLDGQ 286


>gi|294141108|ref|YP_003557086.1| electron transport complex protein rnfC [Shewanella violacea DSS12]
 gi|293327577|dbj|BAJ02308.1| electron transport complex protein rnfC [Shewanella violacea DSS12]
          Length = 914

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 99/334 (29%), Gaps = 63/334 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K S      +     +++N  E EP    D  IMR +   ++ G  I    +   
Sbjct: 156 FPTHIKLS-----PASDIELVIINGIECEPYITSDDMIMREKSDEILNGIAIIHKLLTPK 210

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +     +  E +Q A+           N        + +      Y  G E  L+
Sbjct: 211 RLIIAIEDNKPQAIEEMQHAL-----------NRSSLPKDGVRITSIPTLYPSGGEKQLI 259

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G++         PA +G+      V NV +   +   +           R      
Sbjct: 260 QILTGQEV---PSGSIPAQLGI-----VVQNVATAYAINEAVL----------RNYPLIE 301

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G +   P      +      ++ +              VI GG  +    A   
Sbjct: 302 RVVTVTGENTQLPGNYWIPIGTPISHVLSQTQFIGNEHDK----VIIGGPMMGY--ALHN 355

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A      LK     L  A+  +                  K   C +C  C +     
Sbjct: 356 DNAP----TLKGSNCVLLPASDELAPEQ--------------KEIPCVRCGECAQVCPAQ 397

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
           +   +      AQ+ +    + ++  IE    C 
Sbjct: 398 LLPQQLFWHAKAQEYDKATSFNLADCIE----CG 427


>gi|163751795|ref|ZP_02159012.1| electron transport complex protein RnfC [Shewanella benthica KT99]
 gi|161328359|gb|EDP99519.1| electron transport complex protein RnfC [Shewanella benthica KT99]
          Length = 620

 Score = 72.7 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 95/334 (28%), Gaps = 63/334 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K S      +     +++N  E EP    D  +MR +   ++ G  I    +   
Sbjct: 156 FPTHIKLS-----PASDIELIIINGIECEPYITADDMLMREKSDEILNGIAIIHRLLAPQ 210

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        E +Q A+           N        + +      Y  G E  L+
Sbjct: 211 RLIIAIEDNKPEAIEEMQHAL-----------NRSSLPKDGVRITSIPTLYPSGGEKQLI 259

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G++         PA +G+      V NV +   +   + R                
Sbjct: 260 QILTGQEV---PSGAIPAQLGI-----VVQNVATAYAINQAILRDFPLI----------E 301

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G            +      ++ +              VI GG  +    A   
Sbjct: 302 RVVTVTGDNTQLAGNYWIPIGTPISHVLTQTQFIGDEHDK----VIIGGPMMGY--ALHN 355

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
             A      LK     L  A+  +                  K   C +C  C       
Sbjct: 356 DNAP----TLKGSNCILLPASDELAPEQ--------------KELPCVRCGECAHVCPVQ 397

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
           +   +      AQ+ +    + ++  IE    C 
Sbjct: 398 LLPQQLFWHAQAQEYDKATKFNLADCIE----CG 427


>gi|238790209|ref|ZP_04633985.1| Electron transport complex protein rnfC [Yersinia frederiksenii
           ATCC 33641]
 gi|238721747|gb|EEQ13411.1| Electron transport complex protein rnfC [Yersinia frederiksenii
           ATCC 33641]
          Length = 567

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 91/300 (30%), Gaps = 62/300 (20%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             L++NA E EP    D  +M+     L+ G  I  + +      I +         +L 
Sbjct: 142 TTLIINAAECEPYITADDRLMQDHAEELVSGIRILIYLLQPQQVLIGIEDNKPEAIAALN 201

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+               G+D DI +      Y  G    L + L GK+          +
Sbjct: 202 QALR--------------GHD-DIQLRVVPTKYPSGGAKQLTKILTGKEV---PFGKHSS 243

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEE 256
           ++G+      + NV ++  +   +                  ++ +++G  ++ P     
Sbjct: 244 SIGV-----LMQNVGTVVAIKRAVIDDEPLI----------ERVVTLTGAALSKPGNFWA 288

Query: 257 SMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGL 315
            +      L+                VI GG  +   LP+  +    +    L    + +
Sbjct: 289 RIGTPVIHLLTLAGFQPPHQP----MVIMGGPLMGFTLPSLDVPIVKISNCILAPTEAEM 344

Query: 316 GTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
           G +                        ++C +C  C +      + + +    +G   ++
Sbjct: 345 GLSEP---------------------EQACIRCGLCVDACPASLLPQQLYWFSRGEEHEK 383


>gi|187934487|ref|YP_001886193.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
           17B]
 gi|187722640|gb|ACD23861.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
           17B]
          Length = 646

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 66/160 (41%), Gaps = 25/160 (15%)

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +I G +N P  +E  +  T  +++E  CGG+     +  A   G      L  G + 
Sbjct: 34  RSIAICGKINNPGIIEVPVGATLRDILE-LCGGVVNN-SSFKAAQIGIPFGGFLNEGSL- 90

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--- 356
               ++    E  S     A+I++     II+       +         T  ++GT    
Sbjct: 91  DKEFNFGLFYENISR----AIIILSEEDCIIQYGKFYIEYLL-------TKIKDGTYKNY 139

Query: 357 --------WMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
                    M++V++R+ KG++  R+I +L  ++ +++ +
Sbjct: 140 EIVKKEITKMLKVLDRISKGVSDMRDIYILRSLAADVKDK 179


>gi|160880195|ref|YP_001559163.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
 gi|160428861|gb|ABX42424.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
          Length = 644

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 17/186 (9%)

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           L ++SG +  P  V  + + T  ++IE   G +      L A   G           +  
Sbjct: 35  LVAVSGKIKKPGIVTLTSNTTLRDIIELSGGML--NDKPLKAAQLGLPFGGFYTKKDI-D 91

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQ----CTPCREGTG 356
             +  D  +E  S     ++I++     II+       F   +  G       P      
Sbjct: 92  RQITPDSFEEGISH----SIIILSEEDCIIQYAKFYIDFLLGKINGGYIDHYIPALPEIL 147

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
            M++V+ R+ KG +  R+I LL E+S+ ++ +            I+ +I  F   I++ +
Sbjct: 148 QMVKVLNRISKGRSNMRDIFLLRELSQTVKEKVH-----QKYNLIEEVIIYFYDEIKDHV 202

Query: 417 DQYHRC 422
           +  +RC
Sbjct: 203 ED-NRC 207


>gi|309776462|ref|ZP_07671448.1| putative electron transport complex, RnfABCDGE type, C subunit
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915853|gb|EFP61607.1| putative electron transport complex, RnfABCDGE type, C subunit
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 433

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 95/328 (28%), Gaps = 60/328 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K+ F           L++NA E EP    D  +++      + G         A 
Sbjct: 144 FPAYIKYKFAKD-----VKKLIINAVECEPFITADYKMIQAHREEFVTGVAAMKKMAMAP 198

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++       + ++ A+               G+     V      Y  G E  L+
Sbjct: 199 EAVIAIKKTHPDLIQFVEEAIKGME-----------GFS----VAAVPDVYPMGWERVLV 243

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             +   + +       P  VG       VNN  +       L  G    S          
Sbjct: 244 REIMHAEYE-----KLPGEVG-----AIVNNATTAIAFGEALLTGTPIVS---------- 283

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP--CLPAG 296
           K  ++SG+ V  P  V+  + +   E+I   CGG       L   I GG  +    +   
Sbjct: 284 KTLTVSGNAVKNPVNVQVPVGVPASEVI-AACGGYTCEDVTL---IAGGPMMGKTIVNDK 339

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI------IKAI-------WRLSVFYKHE 343
            +    M+   + E       A +     S         ++          +        
Sbjct: 340 FVIDRNMNALTILENKPFDSIACLRCGKCSDHCPAGLQPVRIAQAVKTNDKKAMEKLCAM 399

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQ 371
            C +C  C       + V E + +   Q
Sbjct: 400 DCIECGLCTYICPSRLDVTENVRRAKRQ 427


>gi|253581620|ref|ZP_04858845.1| hydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836690|gb|EES65225.1| hydrogenase [Fusobacterium varium ATCC 27725]
          Length = 644

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 11/151 (7%)

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           ++  ++G VN P  +    + T +++I    G       N  A   G      L    + 
Sbjct: 33  RMVVVAGRVNNPGVIAIPENATLNDVIGLAGG--IKNKKNFKAAQFGLPFGGFLTKKSLD 90

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK----HESCGQCTPCREGT 355
             I     L   G       +I++     I+        F           Q T      
Sbjct: 91  KVIDF--SLFPEGV---DRNIIILSEEDCIVSFAKFYVEFLMSKIERSEYVQYTSVENEI 145

Query: 356 GWMMRVMERLVKGIAQKREIDLLYEVSKNIE 386
             + R+++R+ KG A  R++ LL  +S+ I+
Sbjct: 146 ERIWRILDRISKGKANMRDVYLLRHLSETIK 176


>gi|219681490|ref|YP_002467875.1| membrane protein [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471170|ref|ZP_05635169.1| membrane protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219624333|gb|ACL30488.1| membrane protein [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 473

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 39/205 (19%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           + D      +           + +I  +  SG+ G GG  F +  K  F         H 
Sbjct: 84  IKDYKK---YA---------PEKLIKIIHQSGVVGLGGGQFPSSKKIIFSMNRA----HT 127

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+VNA ESEP    D  ++ +    ++ GC I  +        I ++ + I+    +Q  
Sbjct: 128 LIVNAVESEPYITSDNCLIYNHISEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQHL 187

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +                    I +      Y  G    L++SL GK+           ++
Sbjct: 188 IKN-------------KSLFKICI--IKKKYPAGSSKVLVKSLTGKEV---PHGKHSIDI 229

Query: 200 GLYGCPTTVNNVESIAVVPTILRRG 224
           G       + NV +I  +   +  G
Sbjct: 230 GY-----LIFNVATIFSIKRAIING 249


>gi|313673826|ref|YP_004051937.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940582|gb|ADR19774.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 646

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLS-VFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           K + + +     +V D+  DI+K +         +  CG+C P R GT  +   + +L +
Sbjct: 38  KPLKAFVNWDGFLVFDKEADILKTLADYMFEISSYGCCGRCFPGRTGTRIIAEELMKLRE 97

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
             +    +DL+ ++  +I     C +   A  P+   I++F   I
Sbjct: 98  DKSNAAPLDLIKDLCVSINKSAKCTVAPTAVIPVIKFIEHFSDEI 142


>gi|254786926|ref|YP_003074355.1| electron transport complex protein RnfC [Teredinibacter turnerae
           T7901]
 gi|237686186|gb|ACR13450.1| electron transport complex, RnfABCDGE type, C subunit
           [Teredinibacter turnerae T7901]
          Length = 747

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 111/358 (31%), Gaps = 62/358 (17%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            R+  +  ++  G+ G GGAGF   +K +       D    L++N  E EP    D  +M
Sbjct: 125 SREECLARIRNGGVAGMGGAGFPAAVKLNPRANQPID---TLILNGTECEPYITADDMLM 181

Query: 99  RHEPHTLIEGCVIASFAIGAHC-AFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           R +   ++ G ++ +  +G      I +        ++++ A +   A            
Sbjct: 182 REKADEVVAGALLLAHLLGDPANILIGIEDNKPEAIDAMRKATEGTSA------------ 229

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
                V      Y  G E  L+E + G++         PAN+G+      V NV +    
Sbjct: 230 ----NVVVFPTKYPSGGEKQLIEIVTGRQV---PSGALPANIGI-----VVQNVGTARAA 277

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGW 277
              +R G           +R T +   S        +E  +      +++ H        
Sbjct: 278 WRAVRYGEPLI-------SRITTVVGRSLAQQR--NIEVPLGTPIVHVLKHHG----WNP 324

Query: 278 DNLLAVIPGGSSVPCLPAGQMRGAIMDYDGL-------KEMGSGLGTAAVIVMDRSTDII 330
           +    +I GG  +       +   +   + L                     M       
Sbjct: 325 EACARLIIGGPMMGFTMENALAPVVKTTNCLLAPSHEEMPAQPPAQACIRCGMCAQACPA 384

Query: 331 KAIWRLSVFYKHES------------CGQCTPCREGTGWMMRVME--RLVKGIAQKRE 374
             + +   +Y                C +C  C       + +++  R  KG  ++ +
Sbjct: 385 SLLPQQMFWYAQSEDFDKLKEHNLFDCIECGACSYVCPSSIPLVQYYRASKGEIRRLD 442


>gi|188589939|ref|YP_001920992.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500220|gb|ACD53356.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 646

 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 64/160 (40%), Gaps = 25/160 (15%)

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +I G +N P  +E     T  +++E  CGG+     +  A   G      L    + 
Sbjct: 34  RSIAICGKINNPGIIEVPDGATLRDILE-LCGGVVNN-SSFKAAQIGIPFGGFLNESSL- 90

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--- 356
               D+    E  S     A+I++     II+       +         T  ++GT    
Sbjct: 91  DKEFDFGLFYENISR----AIIILSEEDCIIQYGKFYIEYLL-------TKIKDGTYKNY 139

Query: 357 --------WMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
                    M++V++R+ KG++  R+I +L  ++ +++ +
Sbjct: 140 EIVKKEITKMLKVLDRISKGVSDMRDIYILRSLAADVKDK 179


>gi|295111815|emb|CBL28565.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit. [Synergistetes
           bacterium SGP1]
          Length = 179

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 40/194 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K     +       Y +VNA E EP    D+ + R  P  ++      +  +GA 
Sbjct: 20  FPTHVKLDAKAE-------YFIVNAAECEPLIETDKYLCRTFPDRIVRAVSATAAQVGAS 72

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++ E+  E  +L+ AV     +G             +        Y  G+E  ++
Sbjct: 73  RAVIAIKAEYEAEIAALKEAVR-AQGAG-------------VTFCEMPSFYPAGDEQVMV 118

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + + G+    R     P NVG       V+NV ++  V   L                  
Sbjct: 119 QLVTGRSIPERG---LPLNVG-----AVVDNVGTMLNVADALE-----------GKPVTD 159

Query: 240 KLFSISGHVNYPCT 253
           K  S++G V  P  
Sbjct: 160 KFLSVTGAVVKPVV 173


>gi|251779851|ref|ZP_04822771.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084166|gb|EES50056.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 646

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 25/160 (15%)

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +I G +N P  +E     T  +++E  CGG+     +  A   G      L  G + 
Sbjct: 34  RSIAICGKINNPGIIEVPDGATLRDILE-LCGGVVNN-SSFKAAQIGIPFGGFLNEGSL- 90

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG--- 356
               D+    E  S     A+I++     II+       +         T  ++GT    
Sbjct: 91  DKEFDFGLFYENISR----AIIILSEEDCIIQYGKFYIEYLL-------TKIKDGTYKNY 139

Query: 357 --------WMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
                    M++V++R+ KG++  R+I +L  ++ +++ +
Sbjct: 140 EIVKKEITKMLKVLDRISKGVSDMRDIYILRSLAADVKDK 179


>gi|242239349|ref|YP_002987530.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya
           dadantii Ech703]
 gi|242131406|gb|ACS85708.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya
           dadantii Ech703]
          Length = 673

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 108/347 (31%), Gaps = 63/347 (18%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             +    +   D ++  +  +G+ G GGAGF T  K     +        L++NA E EP
Sbjct: 122 QTLPDYRQSTPDQLLAHLHQAGIAGLGGAGFPTAAKLQGGLRG----IDTLIINAAECEP 177

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               D  +M+     +++G  I    +      + +         +L  A+         
Sbjct: 178 YITADDRLMQEHAAEIVQGIDILDHLLQPGRILLGIEDNKPEAITALTQALKPL------ 231

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                      I +      Y  G    L + L GK+          A++G+      + 
Sbjct: 232 ---------PRIQMRVIPTKYPSGGAKQLTKILTGKEV---PFGKHSASIGV-----LMQ 274

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
           N+ ++  +   +  G               ++ +++G  + +P  V   +      L+  
Sbjct: 275 NIGTVYAIKRAVLDGEPLT----------ERVVTLTGDALRHPGNVWARLGTPVRHLLRH 324

Query: 269 HCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTD 328
               +         V+ GG  +                 L  +   +   +  ++  S D
Sbjct: 325 AGYHVTTTQP---MVVMGGPLMGF--------------TLPALDVPIVKISNCILAPSRD 367

Query: 329 IIKAIWRLSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
                  L      ++C +C+ C +      + + +    +G   ++
Sbjct: 368 ------ELQPPEAEKACIRCSKCADACPAGLLPQQLYWFSRGDEHEK 408


>gi|260427004|ref|ZP_05780983.1| eleCtron transport complex, rnfabcdge type, c subunit [Citreicella
           sp. SE45]
 gi|260421496|gb|EEX14747.1| eleCtron transport complex, rnfabcdge type, c subunit [Citreicella
           sp. SE45]
          Length = 476

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
               I   V  +G+ G GGA F   +K +   +      H L++NA E EP    D   +
Sbjct: 165 DPAEIAARVAEAGIVGMGGATFPAAVKLNLRDRYA---LHTLIINAAECEPYLTCDDRHL 221

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           R     + +G  I + A+G     + + G+      +++              N  +GY 
Sbjct: 222 RERAEEVADGAGIMARALGVARIIVAIEGDKPEAAAAMRR------------HNIGMGYP 269

Query: 159 VDIIVHHGAGAYIC 172
             + V      Y  
Sbjct: 270 --LEVRMVPTQYPM 281


>gi|322229364|dbj|BAJ72752.1| unnamed protein product [Lactococcus garvieae]
          Length = 447

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 47/99 (47%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V  M   T  I     L      ++CG+CTPCREG   +  +++++++  A + ++  + 
Sbjct: 58  VEAMPPGTCPIAVQAGLLETSAAQTCGKCTPCREGIPRIKALLDKVLRYEADRSDVAEIA 117

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ +     CA+G  A   +   +++F    E  I +
Sbjct: 118 KRARLLRDTADCAVGYDAGAQVLKGLESFADEYECHISK 156


>gi|311086429|gb|ADP66510.1| membrane protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 451

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 39/205 (19%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           + D      +           + +I  +  SG+ G GG  F +  K  F         H 
Sbjct: 84  IKDYKK---YA---------PEKLIKIIHQSGVVGLGGGQFPSSKKIIFSINRA----HT 127

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+VNA ESEP    D  ++ +    ++ GC I  +        I ++ + I+    +Q  
Sbjct: 128 LIVNAVESEPYITSDNCLIYNHISEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQHL 187

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +                    I +      Y  G    L++SL GK+           ++
Sbjct: 188 IKN-------------KSLFKICI--IKKKYPAGSSKVLVKSLTGKEV---PHGKHSIDI 229

Query: 200 GLYGCPTTVNNVESIAVVPTILRRG 224
           G       + NV +I  +   +  G
Sbjct: 230 GY-----LIFNVATIFSIKRAIING 249


>gi|15616735|ref|NP_239947.1| membrane protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219682046|ref|YP_002468430.1| membrane protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|17368120|sp|P57215|RNFC_BUCAI RecName: Full=Electron transport complex protein rnfC
 gi|25403549|pir||A84943 membrane protein [imported] - Buchnera sp. (strain APS)
 gi|10038798|dbj|BAB12833.1| membrane protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|219621779|gb|ACL29935.1| membrane protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|311085858|gb|ADP65940.1| membrane protein [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311087011|gb|ADP67091.1| membrane protein [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
 gi|311087582|gb|ADP67661.1| membrane protein [Buchnera aphidicola str. JF98 (Acyrthosiphon
           pisum)]
          Length = 473

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 39/205 (19%)

Query: 20  LSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHY 79
           + D      +           + +I  +  SG+ G GG  F +  K  F         H 
Sbjct: 84  IKDYKK---YA---------PEKLIKIIHQSGVVGLGGGQFPSSKKIIFSINRA----HT 127

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+VNA ESEP    D  ++ +    ++ GC I  +        I ++ + I+    +Q  
Sbjct: 128 LIVNAVESEPYITSDNCLIYNHISEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQHL 187

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +                    I +      Y  G    L++SL GK+           ++
Sbjct: 188 IKN-------------KSLFKICI--IKKKYPAGSSKVLVKSLTGKEV---PHGKHSIDI 229

Query: 200 GLYGCPTTVNNVESIAVVPTILRRG 224
           G       + NV +I  +   +  G
Sbjct: 230 GY-----LIFNVATIFSIKRAIING 249


>gi|257065213|ref|YP_003144885.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
           [Slackia heliotrinireducens DSM 20476]
 gi|256792866|gb|ACV23536.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
           [Slackia heliotrinireducens DSM 20476]
          Length = 612

 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 41/100 (41%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +  M   T  I     L      ++CG+C PCR+G   +  +M  ++   A +  +D + 
Sbjct: 27  IEAMPPGTCPIAVQLVLLETGGAQTCGKCVPCRDGIPQLAALMRSVLNCEADECTLDTMR 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQY 419
           ++++ I+  + CA+G  A       +  F       +   
Sbjct: 87  QLAQMIKDTSDCAIGYEAGKMALEGLDAFAEEYRSHVQNK 126


>gi|332685908|ref|YP_004455682.1| electron transport complex protein RnfC [Melissococcus plutonius
           ATCC 35311]
 gi|332369917|dbj|BAK20873.1| electron transport complex protein RnfC [Melissococcus plutonius
           ATCC 35311]
          Length = 430

 Score = 70.8 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 93/265 (35%), Gaps = 47/265 (17%)

Query: 31  NVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPG 90
              + L   R+  +  ++ +G+ G GGAGF T  K  +  +        L++NA E EP 
Sbjct: 69  QTKEYLPLSRETPLERIQEAGIIGLGGAGFPTAKKLDYTFQGDG----TLLINAAECEPI 124

Query: 91  TCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLG 150
              +   +      +I+G  I      A  A I ++       E L+    +        
Sbjct: 125 LDHNIQRIEANIKEIIQGIKIVMTLTHATRAIIAIKHCHTATIEILEKNCSK-------- 176

Query: 151 SNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
                    +I +H     Y  G+E AL+    G   +   + P  AN         V+N
Sbjct: 177 ---------NISIHELPSIYPVGDERALVRECLGILLKV-DQLPLEANA-------IVSN 219

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPC----TVEESMSITFDELI 266
           +E+I  +   +     +            K  +++G +         ++  +   F+E+ 
Sbjct: 220 LETIFRIYEAVELRKPFID----------KDLTVAGKLKESGSVNVLLDVPIGKKFNEVF 269

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVP 291
           E   G  +   +    +I GG  + 
Sbjct: 270 ELVGGIGKEYGE----IIEGGPFMG 290


>gi|238916166|ref|YP_002929683.1| glutamate synthase (NADPH) small chain [Eubacterium eligens ATCC
           27750]
 gi|238871526|gb|ACR71236.1| glutamate synthase (NADPH) small chain [Eubacterium eligens ATCC
           27750]
          Length = 615

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 1/105 (0%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           ++        I            +SCG+C PCR G   + R+ + ++ G A +  +D++ 
Sbjct: 31  IVASPPGLCTIDLTRSFIKMCLAQSCGKCVPCRVGLRQLARLFDDVLDGNATEETLDVIR 90

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ-YHRCN 423
             ++ I     CA+G  AA  +   I          +++ +  CN
Sbjct: 91  LTAEGIYYSADCAIGYEAAKLVLKCIDGCEDDFRSHMERGFCSCN 135


>gi|325678152|ref|ZP_08157782.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           albus 8]
 gi|324110157|gb|EGC04343.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           albus 8]
          Length = 421

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 109/357 (30%), Gaps = 68/357 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEP 89
             V       R+  IN V+ SG                      +D    L+VN  ESE 
Sbjct: 94  AAVRVPRADDRESFINAVRESG----------CPAAEKISAAADADM---LIVNGVESEQ 140

Query: 90  GTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLL 149
               +   M  +   +  G  + S  +G     I V  +     ++++    +       
Sbjct: 141 YVTSENRCMLDDGKLITAGIALISRLMGIEKTVIAVASDCEEAVDAMEKTAADAPK---- 196

Query: 150 GSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVN 209
                        V      +  G +  L+ ++ G+        P  AN         + 
Sbjct: 197 -----------CEVVKVRPDHPAGADMVLVNNVAGR--------PIKANETAAEKKVMIL 237

Query: 210 NVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEK 268
               +A + +    G  +            +  ++ G  V  PC VE  +     +L   
Sbjct: 238 LPSEVAFIASYFETGMPFIK----------RRVTVDGDLVKTPCVVEAPIGTPLKDLFAF 287

Query: 269 HCGGIRGGWDNLLAVIPGGSSV--PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
             G +      ++  +  G  V  P LP G+   A + +    E G   G  ++ V+   
Sbjct: 288 ADGNLLPAEKLVIGGLMTGRCVTDPELPLGKCDSAALIFMKPLESG---GKGSLKVVGGQ 344

Query: 327 TDIIKAIWRLSVFYKHESCGQCTP-CREGTGWMMRVMERLVKGIAQKREIDLLYEVS 382
           T+ I+             CG+C   C  G   M   +E+ VK   +     L  ++ 
Sbjct: 345 TNCIR-------------CGRCAKACPAGL--MPMRIEKAVKKRKRTELRRLRPDLC 386


>gi|239627164|ref|ZP_04670195.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239517310|gb|EEQ57176.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 198

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 50/117 (42%), Gaps = 1/117 (0%)

Query: 306 DGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERL 365
             +K + +      +  +  +  I+  + +     + ++CG+C    EG   +   +  +
Sbjct: 1   MNIKGVSAMSTLERIKNLKETDCIVDILLKEVRANQCQTCGKCVFGYEGITQLELTLGDI 60

Query: 366 VKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +   +  ++DL+ ++ + ++ +++C  G+  A  +   I+ +    E  I +   C
Sbjct: 61  TEKKGRSGDLDLMKDLCQMMKTQSLCETGEEIAEAVLAAIQTYPADFEAHIGK-KAC 116


>gi|193215458|ref|YP_001996657.1| electron transport complex, RnfABCDGE type subunit C
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088935|gb|ACF14210.1| electron transport complex, RnfABCDGE type, C subunit
           [Chloroherpeton thalassium ATCC 35110]
          Length = 441

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 115/321 (35%), Gaps = 64/321 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
            ++ I+N +KA+G+ G GGAGF T +K +       D    +++N  E EP    D  +M
Sbjct: 120 SKEDILNRIKAAGVVGMGGAGFPTNVKLAPPKDKVID---TVILNGAECEPFLTSDHRLM 176

Query: 99  RHEPHTLIEGCVIASFAIGA-HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
             EP  +IEG  I +        A++ V         + + A++               Y
Sbjct: 177 VEEPEGIIEGLKIITSLFSTPVKAYVGVE-------ANKKDAIEALAKYA-------SSY 222

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           + +  V      Y  G E  L+ S+ G+K Q   +   P + G       VNNV +   V
Sbjct: 223 NFE--VVQLETKYPQGAEKQLINSITGRKIQ---EGELPFDKG-----CIVNNVGTAFAV 272

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGG 276
              +           +      ++ ++SG  +     ++  +   F ++I   CG I   
Sbjct: 273 YEAVC----------KNKPLIERVVTVSGIEIQAKKNLKVIIGTMFSDII-SACGNI--- 318

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRL 336
              +  VI GG          M  A   +    E      ++ ++ ++            
Sbjct: 319 PGTVNQVISGGP--------MMGKAQYSF----EASIIKTSSGILFINNEG--------- 357

Query: 337 SVFYKHESCGQCTPCREGTGW 357
               +  +C +C  C E    
Sbjct: 358 LDTSRERTCIRCGKCVEACPQ 378


>gi|257791994|ref|YP_003182600.1| putative glutamate synthase (NADPH) small subunit [Eggerthella
           lenta DSM 2243]
 gi|257475891|gb|ACV56211.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Eggerthella lenta DSM 2243]
          Length = 617

 Score = 70.4 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V         +     +      ++CG+C PCR+G   +  +++R+V   A +  ++ L 
Sbjct: 32  VEATPPGMCPLAVQLTMLQTSGAQTCGKCVPCRDGIPQLAAMLKRVVDCEADEGVLEGLR 91

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
            +++ I   + CA+G  AA  +   +  F       +  
Sbjct: 92  ALAEMIRDASDCAIGYEAARSVLEGLDTFADEYASHLRD 130


>gi|330860332|emb|CBX70645.1| hypothetical protein YEW_HF31200 [Yersinia enterocolitica W22703]
          Length = 88

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 16 QGKSLSDSMSRGHWDNVDKILE-KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
          Q   L +  S+  +   +K L+      +++ VK +GL+GRGGAGFSTG+KWS MPK  +
Sbjct: 29 QPVWLDEYRSKNGYVGAEKALKSMAAPDVVSLVKDAGLKGRGGAGFSTGLKWSLMPKAKA 88


>gi|325831614|ref|ZP_08164831.1| pyridine nucleotide-disulfide oxidoreductase [Eggerthella sp. HGA1]
 gi|325486485|gb|EGC88934.1| pyridine nucleotide-disulfide oxidoreductase [Eggerthella sp. HGA1]
          Length = 612

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 41/98 (41%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V         +     +      ++CG+C PCR+G   +  +++R+V   A +  ++ L 
Sbjct: 27  VEATPPGMCPLAVQLTMLQASGAQTCGKCVPCRDGIPQLAAMLKRVVDCDADEGVLEGLR 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++ I   + CA+G  AA  +   +  F       + 
Sbjct: 87  ALAEMIRDTSDCAIGYEAARSVLEGLDTFADEYASHVH 124


>gi|317488630|ref|ZP_07947173.1| hypothetical protein HMPREF1023_00871 [Eggerthella sp. 1_3_56FAA]
 gi|316912282|gb|EFV33848.1| hypothetical protein HMPREF1023_00871 [Eggerthella sp. 1_3_56FAA]
          Length = 617

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 41/98 (41%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V         +     +      ++CG+C PCR+G   +  +++R+V   A +  ++ L 
Sbjct: 32  VEATPPGMCPLAVQLTMLQASGAQTCGKCVPCRDGIPQLAAMLKRVVDCDADEGVLEGLR 91

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
            +++ I   + CA+G  AA  +   +  F       + 
Sbjct: 92  ALAEMIRDTSDCAIGYEAARSVLEGLDTFADEYASHVH 129


>gi|157370479|ref|YP_001478468.1| RnfABCDGE type electron transport complex subunit C [Serratia
           proteamaculans 568]
 gi|166991048|sp|A8GE00|RNFC_SERP5 RecName: Full=Electron transport complex protein rnfC
 gi|157322243|gb|ABV41340.1| electron transport complex, RnfABCDGE type, C subunit [Serratia
           proteamaculans 568]
          Length = 703

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 94/318 (29%), Gaps = 66/318 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     +   +    L++NA E EP    D  +M+     +IEG  I    +   
Sbjct: 152 FPTASKL----QGGMNGVETLILNAAECEPYITADDRLMQEHADQVIEGTQILRHLLQPK 207

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +L+ A+                    I +      Y  G    L 
Sbjct: 208 VTLIGIEDNKPEAIAALKLALRG---------------QPGIALRVIPTKYPSGGAKQLT 252

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L GK+          + +G+      + NV +   +   +  G               
Sbjct: 253 KILIGKEV---PHGKHSSAIGV-----LMQNVGTAFAIKRAIVDGEPLI----------E 294

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC-LPAGQ 297
           ++ +++G  ++ P  +   +      L++               V+ GG  +   LPA  
Sbjct: 295 RVVTLTGEALSLPGNLWARIGTPVQHLLKFAG----FQPQAQQMVVMGGPLMGFTLPALH 350

Query: 298 MRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG- 356
           +    +    L                        +  ++   + +SC +C  C +    
Sbjct: 351 VPIVKISNCILAPS---------------------VSEMAPQEQEQSCIRCGLCVDACPA 389

Query: 357 -WMMRVMERLVKGIAQKR 373
             + + +    +G   ++
Sbjct: 390 GLLPQQLYWFSRGEEHEK 407


>gi|315302648|ref|ZP_07873447.1| PduS type ferredoxin, putative [Listeria ivanovii FSL F6-596]
 gi|313628976|gb|EFR97310.1| PduS type ferredoxin, putative [Listeria ivanovii FSL F6-596]
          Length = 396

 Score = 70.0 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 45/257 (17%)

Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIV 163
             I+   +    +GA  A +  +  +  E  +L+AA+ E               D  + +
Sbjct: 2   ETIKAIEMVKSQVGAEFAVVATKRYYTEEIAALRAAIQEL--------------DSSVTI 47

Query: 164 HHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRR 223
           H     Y  G+E  ++  + G+   P      P  VG       V+NV ++  V   +  
Sbjct: 48  HEMDNVYPTGDEQVMVFEVTGRIVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIDD 99

Query: 224 GASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
            A              K  +++G V  P  ++  +   F+  +    G            
Sbjct: 100 DAPVIR----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGG------------ 137

Query: 284 IPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE 343
               S    L  G M G + +   L E      T+ +IV + +  + K  ++      +E
Sbjct: 138 -TNLSEYLFLDGGPMMGKLNNQSTLAEKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNE 196

Query: 344 SCGQCTPCREGTGWMMR 360
           +   C  C   T    R
Sbjct: 197 TKSACIQCTLCTDLCPR 213


>gi|160916004|ref|ZP_02078212.1| hypothetical protein EUBDOL_02032 [Eubacterium dolichum DSM 3991]
 gi|158432480|gb|EDP10769.1| hypothetical protein EUBDOL_02032 [Eubacterium dolichum DSM 3991]
          Length = 430

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 105/339 (30%), Gaps = 77/339 (22%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F + +K+ F           L++NA E EP    D   ++        G +       A 
Sbjct: 141 FPSYVKYKFAKD-----VKMLIINAVECEPFITADYRTIQENVKEFRTGVLAMRKMAMAK 195

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I               A+ + +   +   N     D  +        Y  G E  L+
Sbjct: 196 EVSI---------------AIKKTHQDLIDFVNEAFKNDEGVKAVGVPDVYPMGWERVLV 240

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             L  K+ +       P  VG       VNN E+       L  G +             
Sbjct: 241 RELLHKEYE-----KLPIEVG-----AIVNNAETAIAFGEALLYGQAITH---------- 280

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ ++SGH V  P  V+  + +   E++   CGG       L   I GG          M
Sbjct: 281 RILTVSGHGVKEPQNVKVPVGVAASEVV-AACGGYAFDEVKL---IAGGP--------MM 328

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
              I++                 V+DR+ + +  +      Y   SC +C  C +     
Sbjct: 329 GKTIVNDQF--------------VIDRNMNALTVLEN--KPYDSISCLRCGQCSDHCPAG 372

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKN--IEGRTICALGD 395
           ++ + R+ +   +  +   +  +     IE    C L  
Sbjct: 373 LQPV-RIAQ-AVKTNDKSAMERLCAMDCIE----CGLCT 405


>gi|312898747|ref|ZP_07758136.1| respiratory-chain NADH dehydrogenase subunit [Megasphaera
           micronuciformis F0359]
 gi|310620178|gb|EFQ03749.1| respiratory-chain NADH dehydrogenase subunit [Megasphaera
           micronuciformis F0359]
          Length = 382

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 44/234 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K               + N  E EP    +   +  +   L+ G   A     A 
Sbjct: 88  FPTAVKLKT-----EIPQGCFIANCAECEPLLAHNIHQIETDAAQLVRGVKYAMEITKAP 142

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
             +I ++       +  +A ++   A            + +I V      Y  G+E  ++
Sbjct: 143 KGYIAIKP------KHKKAVIELIKACR---------NEDNIDVFRLPDMYPAGDERVIV 187

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             + G + +P      P  VG       ++N E++  +   +                  
Sbjct: 188 REVMGIELEP---GQLPGTVG-----ACIDNAETLKNIALAIEERKPVID---------- 229

Query: 240 KLFSISGHVNY--PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP 291
           K  ++SG V +     V+  +     +LIE+  G I    +    ++ GG    
Sbjct: 230 KDITVSGRVAHKESVFVDVPIGTPMGDLIERAGGFINPHGE----IVVGGPQTG 279


>gi|251789757|ref|YP_003004478.1| RnfABCDGE type electron transport complex subunit C [Dickeya zeae
           Ech1591]
 gi|247538378|gb|ACT06999.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya zeae
           Ech1591]
          Length = 673

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 103/340 (30%), Gaps = 67/340 (19%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
               +++++  +G+ G GGAGF T  K     +        L++NA E EP    D  +M
Sbjct: 131 TPAELVDKLHQAGIAGLGGAGFPTAAKLQGGLRG----IDTLIINAAECEPYITADDRLM 186

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYD 158
           +     + +G  I  + +      + +         +L+  + +                
Sbjct: 187 QECAREIAQGIDILDYLLQPQRILLGIEDNKPEAIAALRVELVD---------------Y 231

Query: 159 VDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVP 218
             I +      Y  G    L   L G++          + +G+      + NV +   + 
Sbjct: 232 PRIQMRVIPTKYPSGGAKQLTRILTGQEV---PFGKHSSAIGV-----LMQNVGTAYAIK 283

Query: 219 TILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGW 277
             +  G               ++ +++G  +  P  V   +      L+      +    
Sbjct: 284 RAVIDGEPLT----------ERVVTLTGDALRQPGNVWARLGTPVRHLLRHAGYHVTTTQ 333

Query: 278 DNLLAVIPGGSSVPC-LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW-R 335
                VI GG  +   LPA                          ++  S  I+      
Sbjct: 334 P---MVIMGGPLMGFTLPA---LDVP-------------------IIKTSNCILAPARDE 368

Query: 336 LSVFYKHESCGQCTPCREGTG--WMMRVMERLVKGIAQKR 373
           +    + + C +C  C +      + + +    +G   ++
Sbjct: 369 IQAQGEEQGCIRCGKCADACPAGLLPQQLYWFSRGQEHEK 408


>gi|266624041|ref|ZP_06116976.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium
           hathewayi DSM 13479]
 gi|288864137|gb|EFC96435.1| Na(+)-translocating NADH-quinone reductase, A subunit [Clostridium
           hathewayi DSM 13479]
          Length = 211

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 5   QDRIFTNLYGLQGKSLSD----SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGF 60
           + R+  N   +    + +      +   +          ++ I N VK +G+ G GGAGF
Sbjct: 84  EPRMVAN-GAMVPSIIVENDGKYETVEGFGRDRDPKTLSKEEIRNIVKEAGIVGLGGAGF 142

Query: 61  STGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHC 120
            T +K +   +   D    ++VN  E EP    D  +M  EP ++++G  +         
Sbjct: 143 PTHVKLTPKDESAID---TIIVNGAECEPYLTSDYRMMLEEPESIVKGLNVILSLFDNAK 199

Query: 121 AFIYVRGEFIRE 132
             I +       
Sbjct: 200 GVIGIENNKPEA 211


>gi|300854054|ref|YP_003779038.1| hypothetical protein CLJU_c08680 [Clostridium ljungdahlii DSM
           13528]
 gi|300434169|gb|ADK13936.1| hypothetical protein CLJU_c08680 [Clostridium ljungdahlii DSM
           13528]
          Length = 229

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 324 DRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSK 383
             +   +  +   +   +  SCG+C  CREG   +  + E + +G  +  +I++L E+S 
Sbjct: 29  SENPCPVDKMRVFTDSTRRTSCGECVICREGILQLNVITEAISQGKGRDGDIEILTEISD 88

Query: 384 NIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
           ++   + C  G       + +I+  +   E+ I +  RC
Sbjct: 89  DLILGSCCDYGKEVGKITKRIIEESKEEFEKHIKR-KRC 126


>gi|78187017|ref|YP_375060.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           luteolum DSM 273]
 gi|78166919|gb|ABB24017.1| Electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           luteolum DSM 273]
          Length = 441

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 109/326 (33%), Gaps = 64/326 (19%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
              ++ I+ ++K +G+ G GGAGF T +K S       D    +++N  E EP    D  
Sbjct: 118 SLSKEEILRKIKDAGVVGMGGAGFPTSVKLSPPKDKPVD---TIILNGAECEPFLTADHR 174

Query: 97  IMRHEPHTLIEGCVIASFAI-GAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKL 155
           +M   P  +++G +I +    G    FI V         +LQ A       G        
Sbjct: 175 LMLESPEGIVKGLLIITSLFEGKAKPFIGVESNKPDAVLALQKA---AAGKG-------- 223

Query: 156 GYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIA 215
                I +      Y  G E  L+ ++ G+  +   +   P + G       V N+ +  
Sbjct: 224 -----IEIVTLETKYPQGAEKQLINAITGRTIE---EGQLPFDKG-----CLVQNIGTAL 270

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +                  ++ ++SG  +     ++  +   F + I    G + 
Sbjct: 271 AVYEAVC----------LNRPLVERIVTVSGMEIKSAKNIKAVIGTRFSD-IAAFAGSMS 319

Query: 275 GGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW 334
              +    VI GG  +    +       +             T+ ++ ++ +        
Sbjct: 320 ---EKTNQVITGGPMMG--RSQFTLDVPVTKT----------TSGILFINNT-------- 356

Query: 335 RLSVFYKHESCGQCTPCREGTGWMMR 360
            +    +  +C +C  C  G    + 
Sbjct: 357 -MLTGSRERTCIRCGKCTSGCPQSLE 381


>gi|206579430|ref|YP_002236769.1| propanediol utilization protein PduS [Klebsiella pneumoniae 342]
 gi|206568488|gb|ACI10264.1| propanediol utilization protein PduS [Klebsiella pneumoniae 342]
          Length = 450

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 97/301 (32%), Gaps = 61/301 (20%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K          R   ++VNA E EP    D+ +M  +   LI G   A  A GA 
Sbjct: 33  FPTHIKLQA-------RVDTVLVNAAECEPMLKVDQQLMAQQADRLIRGLGYAMTATGAR 85

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I ++ ++     +L   + E                    +H     Y  G+E   +
Sbjct: 86  EVIIALKAKYAAAIAALTPRLPEWA-----------------RLHILPDVYPAGDEVLTI 128

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
               G++  P   P     V        VNNV+++  +   + +G               
Sbjct: 129 WLATGRRVPPAALPVSVGVV--------VNNVQTVLNIARAVEQGYPVTR---------- 170

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           +  +++G V  P T+   + ++  E+++   G            I GG  +  L      
Sbjct: 171 RTLTVNGAVARPLTLTVPLGMSLREVLDLAGGATVAEP----GFINGGPMMGSLMTS--L 224

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIW---RLSVFYKHESCGQCTPCREGTG 356
              +             T  ++V+  +  +I+      R  +      C QC  C +   
Sbjct: 225 ETPVTKT----------TGGLLVLPGNHPLIQRRRQDERTLLAIARTVCEQCRLCTDLCP 274

Query: 357 W 357
            
Sbjct: 275 R 275


>gi|313897601|ref|ZP_07831143.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           sp. HGF2]
 gi|312957553|gb|EFR39179.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           sp. HGF2]
          Length = 430

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 95/328 (28%), Gaps = 60/328 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F   +K+ F           L++NA E EP    D  +++      + G         A 
Sbjct: 141 FPAYIKYKFAKD-----VKKLIINAVECEPFITADYKMIQAHKEEFVTGVAAMKKMAMAP 195

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
            A I ++       + ++ AV               G+     V      Y  G E  L+
Sbjct: 196 EAVIAIKKTHPDLIQFVEEAVKGME-----------GFS----VAAVPDVYPMGWERVLV 240

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
             +   + +       P  VG       VNN  +       L  G    S          
Sbjct: 241 REIMHAEYE-----KLPGEVG-----AIVNNATTAIAFGDALLTGTPIVS---------- 280

Query: 240 KLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVP--CLPAG 296
           K  ++SG+ +  P  V+  + +   E++   CGG       L   I GG  +    +   
Sbjct: 281 KTLTVSGNAIKKPVNVQVPVGVPVSEIV-AACGGYTCEDVRL---IAGGPMMGKTIVNDK 336

Query: 297 QMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDI------IKAI-------WRLSVFYKHE 343
            +    M+   + E       A +     S         ++          +        
Sbjct: 337 FVIDRNMNALTILENKPFDSIACLRCGKCSDHCPAGLQPVRIAQAVKTNDKKAMEKLCAM 396

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQ 371
            C +C  C       + V E + +   Q
Sbjct: 397 DCIECGLCTYICPSRLDVTENVRRAKRQ 424


>gi|150016647|ref|YP_001308901.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
 gi|149903112|gb|ABR33945.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
          Length = 644

 Score = 68.1 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 12/160 (7%)

Query: 233 RENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPC 292
           +E + G K+ +I G VN P  +E     T +E+I+  CGG+     N  A   G      
Sbjct: 26  KELSNGRKI-AICGKVNNPGIIEVPEGATLNEIIQ-LCGGLI-NKSNFKAAQIGLPFGGF 82

Query: 293 LPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFY----KHESCGQC 348
           L    +     D+    E  +      +IV+ +   II+       +     K  S    
Sbjct: 83  LTEDSL-DKEFDFGLFYENIART----IIVLSQEDCIIQFEKFYIEYLLAKIKDGSYKNY 137

Query: 349 TPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGR 388
              +E    M  ++ R+ KG++  REI LL  ++  ++ +
Sbjct: 138 EVVKEDITEMFNILNRISKGVSNMREIYLLRNLAVTVKSK 177


>gi|164686811|ref|ZP_02210839.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
           16795]
 gi|164604201|gb|EDQ97666.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
           16795]
          Length = 646

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 82/227 (36%), Gaps = 31/227 (13%)

Query: 204 CPTTVNNVE-SIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
            PT +++   S+  V       +         N++  +  +I G +N    VE     T 
Sbjct: 5   KPTMIHSDRGSVFSVF------SEEELKNMTNNSK--RKVAICGRINNSGIVEVPEGATL 56

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIV 322
            E+IE   G       +      G        + +     +D+D            A+ V
Sbjct: 57  AEIIELAGG--ILDKRDFKGAHVGVPPYGRFLSKEDLDKELDFDLFDNY-----IRAINV 109

Query: 323 MDRSTDIIKAIWRLSV----FYKHESCGQ---CTPCREGTGWMMRVMERLVKGIAQKREI 375
           +     I++     +       ++E   +         G  W  ++++R+ KG +  R++
Sbjct: 110 LSEEDCIVQYAKFYTDSVIGLMQNEGSLKDYAKVQKPLGKVW--QILDRISKGRSNMRDL 167

Query: 376 DLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRC 422
            +L  +++ ++      L       ++ +I+N+   I+E I+   RC
Sbjct: 168 YILRSLAEEVKEE----LNQK-HNIMEEIIENYYDEIKEHIED-DRC 208


>gi|71281638|ref|YP_268922.1| electron transport complex protein RnfC [Colwellia psychrerythraea
           34H]
 gi|71147378|gb|AAZ27851.1| electron transport complex, RnfABCDGE type, C subunit [Colwellia
           psychrerythraea 34H]
          Length = 788

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 93/298 (31%), Gaps = 57/298 (19%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K S           +L++N  E EP    D  +M  + + +++G  I    +   
Sbjct: 154 FPTHIKVS-----SKPDIKFLIINGAECEPYITADDLLMMEQSNAIVDGIKILDRLLTPT 208

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +     +  ++LQ A                     I V      Y  G E  L+
Sbjct: 209 VILIGIEANKPKAIKALQKATAAIEK---------------IKVCIVPTKYPTGGEKQLV 253

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G++ +       P + G+      + N+ +   +   +R                 
Sbjct: 254 QILTGQEVK---SGRLPIHDGI-----VMQNIATCFAINEAVRHDTPLIR---------- 295

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G  +N P  V   +    + L+E+              VI GG  +    + ++
Sbjct: 296 RVVTVTGQALNKPQNVWALLGTPINFLLEQCSVEGIENQKQP--VIMGGPMMGFSVSSEL 353

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
              +   +              I++    ++  A            C +C  C +   
Sbjct: 354 VPIVKTSNC-------------ILVPSKKEMPSA---FEKESNEVECIRCGQCSDVCP 395


>gi|237808208|ref|YP_002892648.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas
           auensis DSM 9187]
 gi|237500469|gb|ACQ93062.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas
           auensis DSM 9187]
          Length = 704

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 83/298 (27%), Gaps = 63/298 (21%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K S   +        +++N  E EP    D  +MR     ++EG  I    +   
Sbjct: 155 FPTYAKLSVAREKA----EIVIINGAECEPYITADDRLMREHAREILEGIEIIKHILRPT 210

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +         +                        D+IV      Y  G    L+
Sbjct: 211 ITIIAIEDNKPEAISAF----------------LLNPLPDDVIVRVIPTKYPSGSARQLI 254

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           E L G++           ++G+      + NV +   +   +                  
Sbjct: 255 EILTGRQV---PSGGRSLSMGV-----VMVNVGTTYAIRQAIIEDEPLVR---------- 296

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G     P      +  +   L+ +         +    VI GGS +        
Sbjct: 297 RVVTLTGTQFKKPGNAWVRLGSSVRWLLAQFS----LIPEPRQRVIMGGSMMGF------ 346

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
                    + ++ + L   +V  +    D               +C +C+ C E   
Sbjct: 347 -TLPHADVPVVKITNCLLAPSVAELPPRDD-------------EMNCIRCSKCAEVCP 390


>gi|323168863|gb|EFZ54543.1| respiratory-chain NADH dehydrogenase 51 Kd subunit [Shigella sonnei
           53G]
          Length = 395

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 80/267 (29%), Gaps = 54/267 (20%)

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D+ +M  +   L+ G   A  A GA    I ++ ++       Q A++            
Sbjct: 5   DQQLMAQQASRLLRGVHYAMKATGASSGIIALKEKY-------QRAINALTPL------- 50

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
                 DI +H     Y  G+E   +    G++  P               P +V  V +
Sbjct: 51  ---LPPDIRLHILPDVYPAGDEVLTIWMATGRRVPP------------AALPVSVGVVVN 95

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
                  + R         R      +  +++G V  P TV   + ++  E++    G  
Sbjct: 96  NVQTVLNIARAVEQQYPVTR------RTLTVNGAVAKPITVTVPIGMSLREVLALAGGAT 149

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                     I GG  +  L         +             T  ++V+  S  +I+  
Sbjct: 150 VDAP----GFINGGPMMGSLITS--LDTPVSKT----------TGGLLVLPNSHSLIQRR 193

Query: 334 W---RLSVFYKHESCGQCTPCREGTGW 357
               R  +      C QC  C +    
Sbjct: 194 MQNDRSVLAVAKTVCEQCRLCTDLCPR 220


>gi|291279992|ref|YP_003496827.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Deferribacter desulfuricans SSM1]
 gi|290754694|dbj|BAI81071.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Deferribacter desulfuricans SSM1]
          Length = 651

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 309 KEMGSGLGTAAVIVMDRSTDIIKAIWRLS-VFYKHESCGQCTPCREGTGWMMRVMERLVK 367
           K++   +     +V D+  +I+  +         +  CG+C P R GT  +   ++++  
Sbjct: 38  KKLKVFVNWNGFLVFDKDVNILDVLTEYMFEISSYGCCGRCFPGRMGTRILAEQLQKIKN 97

Query: 368 GIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNF-RPLIE 413
              +K +I+L Y+++ +I     C +   +  P++  +KNF     E
Sbjct: 98  DGFKKEDIELAYDIAYSIYVSAKCTVAPTSTVPVRQFLKNFMEDKFE 144


>gi|108805842|ref|YP_645779.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Rubrobacter xylanophilus DSM 9941]
 gi|108767085|gb|ABG05967.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Rubrobacter xylanophilus DSM 9941]
          Length = 372

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 89/265 (33%), Gaps = 41/265 (15%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           ++++    R+  +  ++ +G+ G GG GF T  K+        +    L+VNA ESEPG 
Sbjct: 9   LEEVKALSREEAVEIMRQAGIVGAGGGGFPTYFKYK-------NPQPRLIVNATESEPGY 61

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D+ + R      +          G     + V  +        +       A GL   
Sbjct: 62  WADKLLHRVYFDEFLRLYEALREIFGFEQIIMGVHFKDEEWFSDYRE-----RADGLY-- 114

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESL--EGKKGQPRLKPPFPANVGLYGCPT--- 206
                      V      Y  GEE  L++++  E ++     +   P      G P    
Sbjct: 115 ----------EVVLVPDKYAMGEEKTLIKNIFREDREKWVPRRVELPDGSKRPGIPPDAG 164

Query: 207 -TVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDEL 265
             VNN E++  +   L  G              TK   + G        E  +  +  E+
Sbjct: 165 HIVNNSETLLNIYRALFLG----------KPVTTKYLQVFGPDLPLKVYEVPIGASATEV 214

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSV 290
           +E     +      L +VI GG  +
Sbjct: 215 LEAAGVDVEANAGKL-SVIDGGPYL 238


>gi|269215416|ref|ZP_06159270.1| Fe(III) reductase, beta subunit [Slackia exigua ATCC 700122]
 gi|269130903|gb|EEZ61978.1| Fe(III) reductase, beta subunit [Slackia exigua ATCC 700122]
          Length = 608

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 322 VMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
           V   +   I+A          +SCG+CTPCR G   +   +E +++G   +  +D L + 
Sbjct: 29  VSGNANCPIEAAAGFFSLCASQSCGKCTPCRIGLRRLTDDLENILEGKGGEGIVDRLMDT 88

Query: 382 SKNIEGRTICALG 394
            + +   + CA+G
Sbjct: 89  CQALYTTSDCAIG 101


>gi|115702485|ref|XP_789599.2| PREDICTED: similar to mitochondrial complex I subunit NDUFV1
           [Strongylocentrotus purpuratus]
 gi|115941567|ref|XP_001184929.1| PREDICTED: similar to mitochondrial complex I subunit NDUFV1
           [Strongylocentrotus purpuratus]
          Length = 319

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/104 (44%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 198 NVGLYGCPTTVNNV-ESIAVVPTILRRGASW--YSGFGRENNRGTKLFSISGHVNYPCTV 254
             G +    TVN+   S +++P           ++GF  E N+ TKLF+ISG+VN PCTV
Sbjct: 211 VEGGWDNLLTVNSGGSSTSMIPKESSAEGELCGFAGFRCERNQATKLFNISGNVNTPCTV 270

Query: 255 EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           EES S      IEKH GG+ GGW++LL V PGGSS   +P G +
Sbjct: 271 EESKSTPLKFFIEKHAGGVEGGWNDLLTVNPGGSSTSMIPKGFL 314



 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/75 (45%), Positives = 40/75 (53%)

Query: 222 RRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
           R   +         +R +K     G+VN PCTVEES S     LIEKH GG+ GGWDNLL
Sbjct: 160 RTPGTCLKEMSGGGSRKSKKPHKKGNVNTPCTVEESKSTPLKFLIEKHAGGVEGGWDNLL 219

Query: 282 AVIPGGSSVPCLPAG 296
            V  GGSS   +P  
Sbjct: 220 TVNSGGSSTSMIPKE 234



 Score = 49.6 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/58 (56%), Positives = 38/58 (65%)

Query: 247 HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMD 304
           +VN P TVEES SI    LIEKH GG+ GGWDNLLAVIPGGSS+  +P        + 
Sbjct: 67  NVNTPFTVEESKSIPLKFLIEKHAGGVEGGWDNLLAVIPGGSSISMIPKELDLTISLS 124



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/44 (75%), Positives = 35/44 (79%)

Query: 245 SGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGS 288
            G+VN PCTVEES SI    LIEKH GG+ GGWDNLLAVIPGGS
Sbjct: 22  GGNVNTPCTVEESKSIPLKFLIEKHAGGVEGGWDNLLAVIPGGS 65


>gi|27904613|ref|NP_777739.1| electron transport complex protein RnfC [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
 gi|46396891|sp|Q89AW8|RNFC_BUCBP RecName: Full=Electron transport complex protein rnfC
 gi|27904010|gb|AAO26844.1| electron transport complex protein RnfC [Buchnera aphidicola str.
           Bp (Baizongia pistaciae)]
          Length = 505

 Score = 65.4 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 101/316 (31%), Gaps = 62/316 (19%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEP 102
           +IN +  SG+ G  G+GFST  K     +    + H LVVNA ESEP    D  ++++  
Sbjct: 148 LINLIYHSGILGLSGSGFSTSKKL----QCAVGKVHTLVVNAVESEPCVTSDDCLIQNFS 203

Query: 103 HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDII 162
             +I+GC I  + +      I V  E I     L+ +V                   D  
Sbjct: 204 KEIIDGCKILIWILKIKKILIVVSEEKIIAFNVLKKSVINLK---------------DFE 248

Query: 163 VHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILR 222
           +      Y  G    L++ L  K+     +     ++G+      + NV ++  +   + 
Sbjct: 249 LLKVKNKYPSGSSKKLIQILFNKEI---PQGKHAIDLGI-----IMYNVATVFAIKKAIL 300

Query: 223 RGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLL 281
            G               ++ ++ G        V   +      L++ +    +     L 
Sbjct: 301 DGEPLT----------ERVITLYGDKFLPSKNVLVRIGTPISHLMKIY----KLNEKTLK 346

Query: 282 AVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYK 341
            V  GG     L                         +V+  +     +         ++
Sbjct: 347 -VNIGGPITGLLIRNFNF-------------------SVLKTNNCIMFVSIQNNELNNFE 386

Query: 342 HESCGQCTPCREGTGW 357
            ++C +C  C      
Sbjct: 387 EKNCIRCAACSYSCPM 402


>gi|210621821|ref|ZP_03292850.1| hypothetical protein CLOHIR_00795 [Clostridium hiranonis DSM 13275]
 gi|210154585|gb|EEA85591.1| hypothetical protein CLOHIR_00795 [Clostridium hiranonis DSM 13275]
          Length = 394

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 39/219 (17%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
            Y++VNA E EP    +   +      L+ G         A   +I ++    ++     
Sbjct: 108 GYVIVNAAECEPILTHNMAYIEDHAEELVRGLKYLLEITKAAKGYIAIKPHHTKQL---- 163

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
            A+ +   +           + +I + +    Y  G+E  ++  L G + +P  + P  A
Sbjct: 164 IALGKATKN-----------EDNIEIKYLPNMYPAGDERVIVRELLGVELEP-GQLPSVA 211

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN----YPCT 253
                     ++NVE++  V   +                 TK  +++G V         
Sbjct: 212 KA-------IISNVETVKNVVAAIEE----------RRPVITKDLTVAGRVKDEDAQTGR 254

Query: 254 V--EESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
           V     + +     I++  G +    + +L     G   
Sbjct: 255 VFLNVPIGMPISYFIDQCGGILEPYGEIVLGGPFTGKHG 293


>gi|212635175|ref|YP_002311700.1| electron transport complex protein RnfC [Shewanella piezotolerans
           WP3]
 gi|212556659|gb|ACJ29113.1| Electron transport complex, RnfABCDGE type, C subunit [Shewanella
           piezotolerans WP3]
          Length = 917

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 101/334 (30%), Gaps = 62/334 (18%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T +K        +     +++N  E EP    D  +M+     +I G  I    +   
Sbjct: 151 FPTHIKLR-----PASDIELVIINGIECEPYITSDDRLMQEYSDEIISGIGIIERLLTPK 205

Query: 120 CAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALL 179
              I +        E++Q ++           N          +      Y  G E  L+
Sbjct: 206 RIIIAIEDNKPEAFEAMQHSL-----------NRSELSSEKTRITSVPTKYPSGGEKQLI 254

Query: 180 ESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGT 239
           + L G++         PA +G+      V NV +   +   +  G    S          
Sbjct: 255 QILTGQEV---PSGAIPAQLGM-----LVQNVGTAYAIQDAVINGQPLIS---------- 296

Query: 240 KLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
           ++ +++G +   P      +    D +++    G +G  +    +I G      LP    
Sbjct: 297 RVVTVTGQNSESPGNYWVPVGTQIDHVLQ--VNGFKGKLEQDKVIIGGPMMGHTLPD--- 351

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWM 358
               +    LK     L  ++  V     ++               C +C  C       
Sbjct: 352 ----IAAPVLKGTNCILLPSSDEVAPEQPEM--------------PCIRCGECAVACPAQ 393

Query: 359 MRVMERLVKGIAQKREIDLLYEVSKNIEGRTICA 392
           +   +      AQ+ +    + ++  IE    C 
Sbjct: 394 LLPQQLFWHAQAQEYDKAASFNLNDCIE----CG 423


>gi|330881185|gb|EGH15334.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 78

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 16 QGKSLSDSMSRGHWDNVDKILEK-GRDWIINEVKASGLRGRGGAGFSTG 63
          +   L +  ++  +    K L +   D I+  VK SGL+GRGGAGF TG
Sbjct: 30 EPVWLDEYQAKDGYAAARKALTQQSPDDIVQSVKDSGLKGRGGAGFPTG 78


>gi|257064350|ref|YP_003144022.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
           [Slackia heliotrinireducens DSM 20476]
 gi|256792003|gb|ACV22673.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
           [Slackia heliotrinireducens DSM 20476]
          Length = 612

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 43/99 (43%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           V  M   T  I     +      ++CG+CTPCREG   ++   E L+   A    ++ + 
Sbjct: 27  VESMPPGTCPIAVQQAMLQTCAAQTCGKCTPCREGIPKILADYELLLDFDADASVVEDIR 86

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQ 418
           + ++ +     CA+G  A   +   +K F    +  +++
Sbjct: 87  KRAQLLCDTADCAIGYHAGELVLEGLKEFAAEFDSHVNR 125


>gi|270619155|ref|ZP_06221795.1| Electron transport complex protein rnfC [Haemophilus influenzae
           HK1212]
 gi|270317873|gb|EFA29210.1| Electron transport complex protein rnfC [Haemophilus influenzae
           HK1212]
          Length = 141

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 23/137 (16%)

Query: 81  VVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV 140
           ++N  E EP    D  +MR     +I+G  I  + +      I +         +++ A+
Sbjct: 1   IINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNAL 60

Query: 141 DECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVG 200
                    G+N       DI +      Y  G    L+  L G +          +++G
Sbjct: 61  Q--------GTN-------DISIRVIPTKYPSGATKQLIYLLTGIEV---PSGERSSSIG 102

Query: 201 LYGCPTTVNNVESIAVV 217
           +      + NV ++  +
Sbjct: 103 V-----LMQNVGTMFAI 114


>gi|224826605|ref|ZP_03699706.1| dehydrogenase subunit, putative [Lutiella nitroferrum 2002]
 gi|224601206|gb|EEG07388.1| dehydrogenase subunit, putative [Lutiella nitroferrum 2002]
          Length = 96

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLY 379
           +I     T +   +  +  F   ESCG+CTPC+ GT  +  + E  + G   +       
Sbjct: 1   MIAFADDTPLAAILAEVFRFGAGESCGKCTPCQRGTPQLAAMFEAAMAGGRIEP--GRCA 58

Query: 380 EVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
           ++   +   ++C  G   A   + +  +F    + 
Sbjct: 59  DLLDALGAASLCGHGRGLAEFARAVQTHFPEEWKA 93


>gi|326565196|gb|EGE15383.1| NADH-quinone oxidoreductase subunit F [Moraxella catarrhalis
           103P14B1]
          Length = 107

 Score = 63.1 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 11  NLYGLQGK-SLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWS 67
            LY      +L+D  +   +  +   L K    +   +K + +RGRGGAGF+ G+KW+
Sbjct: 50  RLYHHDALLTLADYEALDGFVGLKNALTKSPKEVGEMIKTANVRGRGGAGFNAGLKWT 107


>gi|298528245|ref|ZP_07015649.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511897|gb|EFI35799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 203

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 324 DRSTDIIKAIWRLS-VFYKHESCGQCTPCREGTGWMMRVMERLVK--GIAQKREIDLLYE 380
           +     ++ +      F     CG+C PC  GTG     + RL         R++DLL  
Sbjct: 22  EERACPVQQMQYFIDEFLDKPMCGKCYPCALGTGEAQIRVARLASRGAEVDSRDLDLLRR 81

Query: 381 VSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           +  N+   ++C  G      I  L++N R  I E +D+   C 
Sbjct: 82  IGDNMVRGSLCKRGKDTGEFILELLENSRDEIMEHVDRS--CP 122


>gi|115639273|ref|XP_001201081.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa, partial [Strongylocentrotus purpuratus]
 gi|115654865|ref|XP_798823.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) flavoprotein
           1, 51kDa, partial [Strongylocentrotus purpuratus]
          Length = 62

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 41/55 (74%)

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
           I R GA W++GFGRE N+G KLF+ISG+VN PCT+EES S     LIEKH GG+ 
Sbjct: 2   ICRNGALWFAGFGRERNQGIKLFNISGNVNTPCTMEESKSTPLKFLIEKHAGGVE 56


>gi|289679203|ref|ZP_06500093.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae
           FF5]
          Length = 71

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 366 VKGIAQKREIDLLYEVSKNI-EGRTICALGDAAAWPIQGLIKNFRPLIEERI 416
             G  Q  +I+ L  +   +  G+T CA    A  P+   IK FR   E  I
Sbjct: 1   ENGQGQPGDIETLLGLVNFLGPGKTFCAHAPGAVEPLGSAIKYFRSEFEAGI 52


>gi|330884893|gb|EGH19042.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 42

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/41 (53%), Positives = 27/41 (65%)

Query: 184 GKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRG 224
                PR KPPFPA VG++G PT VNNVE++  VP I+  G
Sbjct: 1   APPANPRSKPPFPAAVGVWGKPTCVNNVETLCNVPAIVNNG 41


>gi|170769774|ref|ZP_02904227.1| propanediol utilization protein PduS [Escherichia albertii TW07627]
 gi|170121388|gb|EDS90319.1| propanediol utilization protein PduS [Escherichia albertii TW07627]
          Length = 395

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 84/267 (31%), Gaps = 54/267 (20%)

Query: 94  DRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNS 153
           D+ +M  +   L+ G   A  A GA    I ++ ++       Q A+       LL  N 
Sbjct: 5   DQQLMAQQASRLLRGVHYAMKATGASNGIIALKEKY-------QPAISTLTP--LLPPN- 54

Query: 154 KLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
                  I +H     Y  G+E   +    G++  P               P +V  V +
Sbjct: 55  -------IRLHILPDVYPAGDEVLTIWMATGRRVPP------------GALPVSVGVVVN 95

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
                  + R         +E     +  +++G V  P TV   + ++  E++    G  
Sbjct: 96  NVQTVLNIARAVE------QEYPVTRRTLTVNGAVAKPITVSVPIGMSLREVLALTGGVT 149

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAI 333
                     I GG  +  L       A +             T+ ++V+  +  +I+  
Sbjct: 150 VDKP----GFINGGPMMGSLLTS--LDAPVSKI----------TSGLLVLPYTHSLIQRR 193

Query: 334 W---RLSVFYKHESCGQCTPCREGTGW 357
               R  +      C QC  C +    
Sbjct: 194 MQDDRSVLTVAKTVCEQCRLCTDLCPR 220


>gi|317060630|ref|ZP_07925115.1| hydrogenase [Fusobacterium sp. D12]
 gi|313686306|gb|EFS23141.1| hydrogenase [Fusobacterium sp. D12]
          Length = 599

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 20/170 (11%)

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
           +T  ++I    G          A   G      L +  +    +D+    E         
Sbjct: 1   MTLQDVITAVGG--IKNKKQFKAAQFGIPFGGFLTSKHLEH-PIDFSLFPE-----NERN 52

Query: 320 VIVMDRSTDIIKAIWRLSVFY------KHESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
           +I++     II        F       K E              + R+++R+ KG +  R
Sbjct: 53  IIILSEEDCIISFSKFYIEFLQDMISEKEEKYAAYHQVTHEVERIGRILDRISKGKSNMR 112

Query: 374 EIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           ++ LL  +S  I+ +            +  +I  F   IEE ++   +C 
Sbjct: 113 DVYLLRYLSDIIKTK-----LQQKHNMVLEIIDTFYDEIEEHVEDL-KCP 156


>gi|121535151|ref|ZP_01666967.1| FAD dependent oxidoreductase [Thermosinus carboxydivorans Nor1]
 gi|121306260|gb|EAX47186.1| FAD dependent oxidoreductase [Thermosinus carboxydivorans Nor1]
          Length = 666

 Score = 60.0 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 65/189 (34%), Gaps = 26/189 (13%)

Query: 242 FSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGA 301
            ++ G V  P T          +++  + GG+      L AV+ GG++   +   +++  
Sbjct: 10  VTVKGQVRQPGTYSVQPGHNLLDIVFSYAGGMATNRFLLKAVLVGGAAGHFVGEAELKQP 69

Query: 302 IMDYDGLKEMGSGLGTAAVIVMDRSTD-----IIKAIWRLSVFYKHESCGQCTPCREGTG 356
           +                 ++V D  +       +  ++           G C  C     
Sbjct: 70  VSQSQE------------IMVFDEGSCLVNVVRLLLVYNRVTLLSTRDAG-CQVCTAAVA 116

Query: 357 WMMRVMERLVKGIAQKREIDLLYEVS--KNIEGRTICALGDAAAWPIQGLIKNFRPLIEE 414
             ++++ERL   +   R++  L  ++  +N +  + CA    A  P++  +  +      
Sbjct: 117 EAVKLLERLTTSVGTARDVAELARIAGSQNPDCPSRCA----ALRPLKTAMALWSDEFAA 172

Query: 415 RIDQYHRCN 423
                 RC 
Sbjct: 173 H--GAARCP 179


>gi|226330216|ref|ZP_03805734.1| hypothetical protein PROPEN_04129 [Proteus penneri ATCC 35198]
 gi|225201011|gb|EEG83365.1| hypothetical protein PROPEN_04129 [Proteus penneri ATCC 35198]
          Length = 270

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  K     K   D    L++NA E EP    D  +M+     +I GC I    +   
Sbjct: 152 FPTATKL----KGGGDLIKTLIINAAECEPYITADDRLMQEHADEVIAGCQILIHLLSPD 207

Query: 120 CAFIYVRGEFIRERESLQAAV 140
              I +        ESL+ A+
Sbjct: 208 EVLIGIEDNKPEAIESLKHAL 228


>gi|317054863|ref|YP_004103330.1| electron transport complex, RnfABCDGE type subunit C [Ruminococcus
           albus 7]
 gi|315447132|gb|ADU20696.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           albus 7]
          Length = 420

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 100/361 (27%), Gaps = 70/361 (19%)

Query: 30  DNVDKILEKGRDWIINEVKASG-LRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE 88
             V       R+  I  +KASG   GR  A  +                  L+VN  ESE
Sbjct: 94  AAVKTPRADSRESFIEALKASGSPAGRKIARAANA--------------DILIVNGIESE 139

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
                +   M  +   +  G  +    +G +  +I V  +      +++    +      
Sbjct: 140 QYLTAENRCMLDDSELITAGIALTGKLLGINTTYIAVASDCSEALAAMEKVAAKA----- 194

Query: 149 LGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTV 208
                      + +V      +  G +  L+ ++ G+  +P+                 V
Sbjct: 195 ----------PNTLVTKLRCDHPGGSDLMLVNNITGRSIKPKETAA--------DKKVLV 236

Query: 209 NNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIE 267
                +A + +    G  +            +  ++ G  V  PC ++  +      L++
Sbjct: 237 LLPSDVAFIASYFETGMPFI----------ERRVTVDGDLVKTPCILKAPIGTPLSALLD 286

Query: 268 KHCGGIRGGWDNLLAVIPGGSSV-------------------PCLPAGQMRGAIMDYDGL 308
                 +     ++  +  G SV                   P  P              
Sbjct: 287 YADANTKPAEKLIIGGLMTGRSVTDTELPLGAEDSAVLIFMKPLAPGKGSLNDPQQKTNC 346

Query: 309 KEMG--SGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLV 366
            + G  +    A ++ M     + +         + + C +C  C         + + + 
Sbjct: 347 IKCGRCAHACPAKLMPMRIEKALKRRNKAALERLRPDLCIKCGACTYVCPAKRELTKVIR 406

Query: 367 K 367
           +
Sbjct: 407 E 407


>gi|169837543|ref|ZP_02870731.1| electron transport complex protein RnfC [candidate division TM7
           single-cell isolate TM7a]
          Length = 501

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 82/299 (27%), Gaps = 62/299 (20%)

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M++    ++ G  +    +      I +  E     E  +                +   
Sbjct: 1   MKNFTKEILRGLKVIQKLLNPKEIVIGIEEENKELIEIFEK--------------VQDEE 46

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
           +  I +      Y  G E  L+ ++ GK+ +   K   P   G+      V+NV ++  +
Sbjct: 47  EFKIKIELLPVIYPQGSELQLINTITGKEVK---KGELPLEKGV-----IVSNVSTVKAI 98

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGG 276
                 G               ++ +ISG                   ++ +        
Sbjct: 99  YDAFFEG----------KPLTERIVTISGEKAKNIGNYRLKFGTPVYHIVREL------K 142

Query: 277 WDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAV---IVMDRSTDIIKAI 333
             N   VI GG  +      ++  + +           L T  +     +     +    
Sbjct: 143 ITNEDKVIFGGPMMGT----EIFDSRVPTVKGTSGILFLDTEEIERKSCISCGYCVEACP 198

Query: 334 WRLSVF-YKH---------------ESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
             L  F +                 ++C +C  C       + +ME +  G     E++
Sbjct: 199 MNLMPFEFADYYKNGKYEKMATANIQNCIECGACEFVCPSRVPLMESIKTGKLILSELE 257


>gi|323703107|ref|ZP_08114761.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531884|gb|EGB21769.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 709

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 323 MDRSTDIIKAIWRLSV-FYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
           M  +   +K    L   F   E+   C+ CR     ++  + R+  G   + ++  + ++
Sbjct: 1   MTGNDCKVKQTANLINAFLTAEN--YCSVCRRHFKQILDHLARIQTGSGSRPDLLEIRDL 58

Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCN 423
           +  + G   C  G + A  +   ++ FR      I+  H C 
Sbjct: 59  ASKVTGLCQCGGGKSVAEQVMANLQAFRDEFIIHIEN-HVCP 99


>gi|51947505|gb|AAU14237.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 319

 Score = 58.1 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLV 81
           D V K ++ G   +I EV  + L GRGGAGF TG KW    K    +  Y+V
Sbjct: 269 DAVSKAVKMGPTQVIKEVTEAKLLGRGGAGFMTGRKWESAYKAD-VKEKYVV 319


>gi|51947513|gb|AAU14241.1| hydrogenosomal NADH dehydrogenase 51 kDa subunit [Nyctotherus
          ovalis]
          Length = 46

 Score = 57.7 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 8  IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLR 53
          IF+NLY  Q   ++ ++ RG W     IL   +D++I+E+K SGLR
Sbjct: 1  IFSNLYKDQDPFINGALKRGDWYRTKDILSCPQDFVIDEIKKSGLR 46


>gi|240276237|gb|EER39749.1| NADH-ubiquinone oxidoreductase 51 kDa subunit [Ajellomyces
           capsulatus H143]
          Length = 109

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 24/42 (57%)

Query: 2   LTDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWI 43
           L DQDRIF NLYG  G  L  +M  G W     I+ KG DW+
Sbjct: 62  LKDQDRIFQNLYGHHGADLKTAMKYGDWYRTKDIVLKGHDWV 103


>gi|297521280|ref|ZP_06939666.1| electron transport complex protein RnfC [Escherichia coli OP50]
          Length = 91

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 15 LQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCS 74
          +        + R  W +      + R+ +I  +   G+ G GGAGF TG+K     +   
Sbjct: 15 IDADGEDCWIPRDGWADYR---TRSREELIERIHQFGVAGLGGAGFPTGVKL----QGGG 67

Query: 75 DRPHYLVVNADESEPGTCKDRDIM 98
          D+   L++NA E EP    D  +M
Sbjct: 68 DKIETLIINAAECEPYITADDRLM 91


>gi|108804036|ref|YP_643973.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Rubrobacter xylanophilus DSM 9941]
 gi|108765279|gb|ABG04161.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Rubrobacter xylanophilus DSM 9941]
          Length = 388

 Score = 56.9 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 42/243 (17%)

Query: 32  VDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
           ++++    R+  ++ ++ +G+ G GG GF T  K+            +L+VNA ESEPG 
Sbjct: 9   LEEVKALSREEAVDIMQHAGIVGAGGGGFPTYFKYK-------RPLPHLIVNATESEPGY 61

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGS 151
             D+ + +      ++               + V  +        +  VD     G+   
Sbjct: 62  WGDKLLHKIYLKEFLQLFEAMKAIFEFEQISLGVHEKDREWYAEYEDYVD----EGIY-- 115

Query: 152 NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK-----GQP--RLKPPFPANVGLYGC 204
                      + +    Y  GEE  L++    KK       P    +P  P +VG+   
Sbjct: 116 ----------DIRYVPDTYALGEEKTLVKHATDKKVPLFTNNPDGTRRPGMPPDVGI--- 162

Query: 205 PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
              VNN E++  V   L  G    + F         +F +  H+      E  +     E
Sbjct: 163 --VVNNSETLLNVYRALFLGKPLTTVF-------FTVFGMEKHIMDLKAYEAPVGTPVRE 213

Query: 265 LIE 267
           ++E
Sbjct: 214 ILE 216


>gi|326789476|ref|YP_004307297.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium lentocellum DSM 5427]
 gi|326540240|gb|ADZ82099.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium lentocellum DSM 5427]
          Length = 367

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 103/352 (29%), Gaps = 63/352 (17%)

Query: 33  DKILEKGRDWI-----INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADES 87
            +I++K  + +     + E K  G+ G  G+GF T  K   +      +   L++NA   
Sbjct: 59  KQIIKKAPEDLNIHLLLEEFKEKGICGLSGSGFQTDKKVKAVVDAK-VKEKVLIINAVAC 117

Query: 88  EPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASG 147
           +PG   D  +++HE   + +G  + +  IG +   +                        
Sbjct: 118 DPGLIHDDWLIKHELGKIEKGIALLNKYIGFNRIIL-------------------ATKEK 158

Query: 148 LLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTT 207
           +   +          V      Y  G E  L+  + GK          PA  G+      
Sbjct: 159 IDSKDY--------EVCLVPNRYPMGAEKILINHVLGKNF---AFDEIPAMKGI-----L 202

Query: 208 VNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTV-EESMSITFDELI 266
           + NV++I  +   +  G              T+L +++        V   ++     +++
Sbjct: 203 MLNVQTIYAIYEAIYEGI----------VANTRLITVADLSTGEALVARVNVGDKVIDIL 252

Query: 267 EKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRS 326
            +  G            I  G          +    + Y                   R 
Sbjct: 253 GQTLGKRPRLTPCFGEGIMMGRETTQEDEITLTTNFIGYGEAISYNQEARCRRCGACSRK 312

Query: 327 TDI-------IKAIWR----LSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
             +       I AI +    +      E+C QC  C          M  + +
Sbjct: 313 CPMQIRVDKIIAAIEKNNLSIIKELHPENCIQCGACTYHCKAGKNTMALVEE 364


>gi|310778447|ref|YP_003966780.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ilyobacter polytropus DSM 2926]
 gi|309747770|gb|ADO82432.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ilyobacter polytropus DSM 2926]
          Length = 643

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 36/194 (18%)

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMR 299
           K F + G +N P T     + +  ++  K  GG+      L  V  GG     +    + 
Sbjct: 2   KKFILCGKINNPGTYNIDENRSLIDIFTKLAGGLWNNG-RLSMVQIGGPFGEIVLLKDIE 60

Query: 300 GAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMM 359
             + DY         + T  ++ ++  T  +        +   E           T   +
Sbjct: 61  NPLSDYT------KNIDTDTILFLNDLTCPVDYARFCVRYLIKELRT-----TNETIEEI 109

Query: 360 RVMERLVKGIAQKR--EIDLLYEVS---------KNIEGRTICALGDAAAWPIQGLIKNF 408
             +   +     KR  E+D+L E+          + ++              +  L+ NF
Sbjct: 110 EEIIEKISNGTSKRILELDILKELLEEKTVIPAERKMKKT------------VLFLLNNF 157

Query: 409 RPLIEERIDQYHRC 422
           R + EE I +  +C
Sbjct: 158 REIFEEHITE-KKC 170


>gi|302343180|ref|YP_003807709.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfarculus baarsii DSM 2075]
 gi|301639793|gb|ADK85115.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfarculus baarsii DSM 2075]
          Length = 454

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 99/337 (29%), Gaps = 69/337 (20%)

Query: 30  DNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSD----------RPHY 79
           DN D++L+     ++  ++ +GL      G     + S      S               
Sbjct: 116 DNADQVLQTKPSHLLKAIRKAGLVRAAAHGLPMQAELSPPMAPRSYLFMTGIPVVRTIDT 175

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           L+V A +++     ++  +      L  G    +   GA    I         +      
Sbjct: 176 LIVKAVDADQPIIPNQAGLAGFGAELEIGIAAVARICGAQKVIIAAAKGADLGQ---LPQ 232

Query: 140 VDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANV 199
           +       +   N                 Y  G ++ ++ +L G++       P   +V
Sbjct: 233 IAAAREWSISQVNG--------------CHYPFGLDSMIINALTGREVPTPYGEPR--DV 276

Query: 200 GLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMS 259
           G+   P     + +I  V  +LR G               +LF+++G V  P T    + 
Sbjct: 277 GVLIEP-----LATILDVGRVLRTGRPVID----------RLFTVAGDVAKPQTFRARLG 321

Query: 260 ITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAA 319
               E+I+   G           VI GG  +    A       +  +             
Sbjct: 322 TPMAEMIKAAGGASGQPGK----VIIGGPMMGM--AHFDLNTPVTKES----------DG 365

Query: 320 VIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTG 356
           + V+         + ++  F   E C  C  C +   
Sbjct: 366 LFVIS--------LAKVQTF-SGEPCIHCGRCVQVCP 393


>gi|307689028|ref|ZP_07631474.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 176

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 3   TDQDRIFTNLYGLQGKSLSDSMSRGHWDNVDKIL-EKGRDWIINEV 47
             Q  + +N   +  +S+   +S+G +  V  +L +     +I+EV
Sbjct: 131 KQQKLVLSNCGEINPESIEAYISKGGYQAVGNVLTKMKPQEVIDEV 176


>gi|297194422|ref|ZP_06911820.1| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152264|gb|EDY62676.2| oxidoreductase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 191

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 346 GQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLI 405
           GQC PC+ G       +  ++ G      ++ L EV++ ++GR  C   D +A      +
Sbjct: 1   GQCGPCKLGLPAAAGGLADVMNGGG-PAALEALREVTQAVKGRGACKHPDGSARFFASTL 59

Query: 406 KNFRPLIEERIDQ 418
             F   +   +  
Sbjct: 60  SAFTDDLAAHVLH 72


>gi|254226410|ref|ZP_04919998.1| electron transport complex protein RnfC [Vibrio cholerae V51]
 gi|125621099|gb|EAZ49445.1| electron transport complex protein RnfC [Vibrio cholerae V51]
          Length = 191

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
              + ++  ++ +G+ G GGAGF T  K     +    R   L++NA E EP    D  +
Sbjct: 133 LSPETLLELIRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVL 188

Query: 98  MRH 100
           MR 
Sbjct: 189 MRQ 191


>gi|167947077|ref|ZP_02534151.1| electron transport complex, RnfABCDGE type, C subunit [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 123

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 42/132 (31%), Gaps = 29/132 (21%)

Query: 82  VNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVD 141
           +N  E EP    D  +M   P  +I G  I    +GA  A I V         +LQ  + 
Sbjct: 2   INGAECEPYLTNDHRLMVERPAAVIRGAEIVRRKLGARRATIGVEDNKPDAIATLQTELG 61

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEG-------------KKGQ 188
                           D  + +      Y  G E  L++++ G              +GQ
Sbjct: 62  ----------------DEPVDIVGLPMKYPQGAEKMLIKAIYGIEVPAGQLRAGLRHRGQ 105

Query: 189 PRLKPPFPANVG 200
            R     P+  G
Sbjct: 106 QRGHRWSPSQTG 117


>gi|269867059|ref|XP_002652475.1| electron transport complex protein rnfC [Enterocytozoon bieneusi
           H348]
 gi|220062413|gb|EED41580.1| electron transport complex protein rnfC [Enterocytozoon bieneusi
           H348]
          Length = 134

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 35/166 (21%)

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGY 157
           M HE   L+ G  +    +      I ++  + +E E+L AA+++ ++            
Sbjct: 1   MIHEAEKLVSGVDLICRELSIPEGRIALKKTYTKEIEALTAAIEKLHSK----------- 49

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVV 217
              + +H     Y  G+E  ++  + GK   P      P +VG       V+NV +I  V
Sbjct: 50  ---VQLHLMDSFYPAGDEQVVVYEVTGKVVPP---AGIPLDVG-----AIVDNVATIIAV 98

Query: 218 PTILRRGASWYSGFGRENNRGT-KLFSISGHVNYPCTVEESMSITF 262
              +                 T K  +++G V  P  ++  +  +F
Sbjct: 99  ADAV------------SGIPFTEKYLTVTGEVREPSVLKVPVGTSF 132


>gi|284164104|ref|YP_003402383.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
 gi|284013759|gb|ADB59710.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
          Length = 372

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 65/212 (30%), Gaps = 27/212 (12%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA- 118
           F T  KW  + +V S     L+VN  ESEP    D+ + R     L    +       A 
Sbjct: 33  FPTYAKWERLEEVDS-----LLVNHQESEPNYYMDKWLGRERTEEL--AALFDGLLERAF 85

Query: 119 HCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETAL 178
               I  +     E      A  +               +  I++ +    Y  G E+ L
Sbjct: 86  DRIVIAAKWPDRDEWMGGLEAATDATVYAPDALPV-SEDETGIVIAYTDDKYEFGMESVL 144

Query: 179 LESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRG 238
           +  + G           P + G       V N E+++ V   L  GA             
Sbjct: 145 MRLVAG---VVMGGNELPMDNGW-----IVQNTETLSNVYRALVDGAP----------TT 186

Query: 239 TKLFSISGHVNYPCTVEESMSITFDELIEKHC 270
            K   + G V     +E  +     +L+E   
Sbjct: 187 RKFVHVDGRVPTHRFLEVPIGTPATDLLEAAG 218


>gi|284164472|ref|YP_003402751.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
 gi|284014127|gb|ADB60078.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Haloterrigena turkmenica DSM 5511]
          Length = 374

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 88/273 (32%), Gaps = 46/273 (16%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F +  KW+ +  V S     L+VN  ESEP    D+ +   +        +  +    A 
Sbjct: 38  FPSYAKWTDLDAVDS-----LLVNHQESEPNYYIDKWL--GKTRAETFAALFDALLERAF 90

Query: 120 CAFIY-----VRGEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGE 174
              +       R E++R+ E+         A   L  + + G        +    Y  G 
Sbjct: 91  DRIVVSAKWKDRDEYVRDLETETGGTVIPPAELPLDRDEESGVVF----AYTENKYQYGM 146

Query: 175 ETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRE 234
           E+ LL++++G      +    P + G       V N E++  +   L  G          
Sbjct: 147 ESVLLKTVDGTV----IGTDLPTDHGW-----LVQNTETLYNIFRALSDGEPVTH----- 192

Query: 235 NNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLP 294
                K   +SG V     +E  +     EL+            N  AV+  G    C P
Sbjct: 193 -----KYVHVSGDVPRDRFLEVPIGTPASELLRTAGRPPETLPSN--AVLADGGPGWCFP 245

Query: 295 AGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST 327
                          E G    T  ++V+D  T
Sbjct: 246 VEVSPD---------EYGVRKHTNCLLVLDEET 269


>gi|213026276|ref|ZP_03340723.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 73

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 59  GFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGA 118
           GF TG+K     +   D+   L++NA E EP    D  +M+     ++EG  I +  +  
Sbjct: 1   GFPTGVKL----QGGDDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQP 56

Query: 119 HCAFIYVRGEFIRER 133
               I +     +  
Sbjct: 57  REVLIGIEDNKPQAI 71


>gi|301061249|ref|ZP_07202031.1| conserved domain protein [delta proteobacterium NaphS2]
 gi|300444568|gb|EFK08551.1| conserved domain protein [delta proteobacterium NaphS2]
          Length = 96

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTICALGDAAAWPIQGLIKNFRPLIEERID 417
           M  ++  + +G  +      L E+ +++     CA    AA P+QGL+++F   ++  I 
Sbjct: 1   METLLAAIERGEGEDDFPPRLQEMCRHMR-NAYCAFALGAASPVQGLLEDFGGEVKAHIT 59

Query: 418 QYHRCNFQ 425
           Q  RC  +
Sbjct: 60  Q-KRCPLE 66


>gi|20089546|ref|NP_615621.1| Na+-transporting NADH:ubiquinone oxidoreductase, subunit 1
           [Methanosarcina acetivorans C2A]
 gi|19914459|gb|AAM04101.1| Na+-transporting NADH:ubiquinone oxidoreductase, subunit 1
           [Methanosarcina acetivorans C2A]
          Length = 447

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 83/295 (28%), Gaps = 76/295 (25%)

Query: 89  PGTCKDRDIMRHEP-----------HTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
           PG   D  +M                 ++EG  +   A G     I +R +     ++ +
Sbjct: 137 PGKRIDTLLMNATFPLITHAYLSSLDKVLEGFKLMLEASGISRGVIVLRADDKESIKAFK 196

Query: 138 AA------VDECYASGLLGSNSKLGY--DVDIIVHHGAGAYICGEETALLESLEGKKGQP 189
            A      +      G+  ++  L    D  I+V  G   Y       L  ++ G+K   
Sbjct: 197 NAKVDGKPLTVAPIVGMRHADYYLEDVEDQIIVVAAGKITYTPTMMNLLSANVMGRKLP- 255

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
                      L   P  V+      VV   ++   + Y              +++G VN
Sbjct: 256 -----------LGYEPPDVH------VVVCGVKSAKAVYDAINEGKPYLESAVTVTGAVN 298

Query: 250 YPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLK 309
            P TV         ++IE  CGG +G    ++                            
Sbjct: 299 NPKTVIVKFGTPIKDVIE-ACGGYKGEPGKVIV--------------------------- 330

Query: 310 EMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE-------SCGQCTPCREGTGW 357
             GS      V V      ++K    + V  + E        C  C  C +    
Sbjct: 331 -NGSM---GGVAVYTDEAPVVKNTVGIVVQTEAEVLRDEATVCIHCARCVDVCPM 381


>gi|289679202|ref|ZP_06500092.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. syringae
           FF5]
          Length = 41

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 312 GSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCR 352
           G+ +GT   + +D S +++  +  +  F+  ESCG CTPC 
Sbjct: 1   GTRMGTGLAMAVDDSVNMVSLLRNMEEFFAQESCGFCTPCP 41


>gi|289807817|ref|ZP_06538446.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 134

 Score = 50.0 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 34/161 (21%)

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
           Y  G+E   +    G++  P      PA+VG+      VNNV+++  +   + +      
Sbjct: 2   YPAGDEVLTIWMATGRRVAP---AALPASVGV-----VVNNVQTVLNIARAVEQQFPVTR 53

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
                     +  +++G V  P TV   + ++  E++    G            I GG  
Sbjct: 54  ----------RTLTVNGAVARPLTVTVPVGMSLHEVLALAGGATVDNP----GFINGGPM 99

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDII 330
           +  L         +             T  ++V+ +S  +I
Sbjct: 100 MGGLITS--LDNPVTKT----------TGGLLVLPKSHPLI 128


>gi|289524587|ref|ZP_06441441.1| PduS protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502173|gb|EFD23337.1| PduS protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 185

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 63/213 (29%), Gaps = 40/213 (18%)

Query: 171 ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSG 230
             G+E  LL+   G +  P  +   P +VG     T VNNVE++  +   L         
Sbjct: 1   PAGDEVILLQECLG-RTVP--EGGLPLHVG-----TIVNNVETLYNIGRALE-------- 44

Query: 231 FGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
                        + G V  P      + +    L++   G            + GG  +
Sbjct: 45  ---GKPVTHSFVQLGGAVGEPGIWSVPIGVEASLLVQAAGGVTIDDP----VFVDGGPMM 97

Query: 291 PCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTP 350
                            + +    L + +++V   +   I  + R        +C QC  
Sbjct: 98  G----QYHSDTNFPITKMTKAILVLPSRSLLVKFETM-PIDIMLR----QAQVACCQCNE 148

Query: 351 CREGTGWM--------MRVMERLVKGIAQKREI 375
           C                ++M+ +     +  EI
Sbjct: 149 CTMVCSRYLIGYDLRPHKIMQAMAYESMRLPEI 181


>gi|154495866|ref|ZP_02034562.1| hypothetical protein BACCAP_00146 [Bacteroides capillosus ATCC
           29799]
 gi|150275064|gb|EDN02112.1| hypothetical protein BACCAP_00146 [Bacteroides capillosus ATCC
           29799]
          Length = 437

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/361 (12%), Positives = 88/361 (24%), Gaps = 88/361 (24%)

Query: 40  RDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
              + +    +GL    G G       S + +    +   L+++  ESEP     R +M 
Sbjct: 126 PGELADIAAQAGLTAMDGTGRP----LSQLLRSAMGKADALIIDGTESEPFVTSRRRLMA 181

Query: 100 HEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLGYDV 159
             P  ++ G  +   A+    A + + G       +L+         G L          
Sbjct: 182 DRPEAVLGGVRLLMQALSLPRAVLALEGSQYDAVAALR---------GYLPLRGG----- 227

Query: 160 DIIVHHGAGAY-----ICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESI 214
           DI +      Y     I  E  AL  +                                 
Sbjct: 228 DIELRLLRSRYPQRVVIQEEGRALFTACAAT----------------------------- 258

Query: 215 AVVPTILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGI 273
                      + +    +      ++ +++G  V  P  +   +     +LI +  G  
Sbjct: 259 -----------ALWDAVYQSKALTHRIVTVTGSAVAQPANLLLPIGTPISDLIREAGGWK 307

Query: 274 RGGWDNLLAVIPGGSSVPCLPAGQMRGA--------IMDYDGLKEMGSGLGTAAVIVMDR 325
                 +      G +   L A                 Y  ++     L          
Sbjct: 308 GEPVRLVAGGPMTGRAQHDLAAPVTGDTRALLALSAADLYPSVRPESPCLRCGR----CV 363

Query: 326 STDIIKAIWRLSVFYKH------------ESCGQCTPCREGTGWMMRVMERLVKGIAQKR 373
                         Y               +C +C  C       +R++  +  G  +  
Sbjct: 364 EACPAGLAPLFLHLYVRKGQWEALEREHISACSECGACAYVCPAHLRLVHSIRVGKRRLS 423

Query: 374 E 374
           E
Sbjct: 424 E 424


>gi|213024939|ref|ZP_03339386.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 183

 Score = 47.7 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 57/198 (28%), Gaps = 43/198 (21%)

Query: 160 DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPT 219
           DI +      Y  G    L + L GK+          +++G+      + NV +   V  
Sbjct: 11  DISLRVIPTKYPSGGAKQLTQILTGKQV---PHGGRSSDIGV-----LMQNVGTAYAVKR 62

Query: 220 ILRRGASWYSGFGRENNRGTKLFSISG-HVNYPCTVEESMSITFDELIEKHCGGIRGGWD 278
            +  G               ++ +++G  ++ P  V   +      L+            
Sbjct: 63  AVVDG----------EPITERVVTLTGEAISRPGNVWARLGTPVRHLLNDAGFCPSAD-- 110

Query: 279 NLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSV 338
               VI GG  +                              +V   +  +  ++  +  
Sbjct: 111 --QMVIMGGPLMGF--TLPWLDVP------------------VVKITNCLLAPSVTEMGA 148

Query: 339 FYKHESCGQCTPCREGTG 356
             + +SC +C+ C +   
Sbjct: 149 PQEEKSCIRCSACADACP 166


>gi|307718154|ref|YP_003873686.1| transporter [Spirochaeta thermophila DSM 6192]
 gi|306531879|gb|ADN01413.1| transporter [Spirochaeta thermophila DSM 6192]
          Length = 440

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 96/348 (27%), Gaps = 55/348 (15%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + +   + +SG+   G      G    F+P     +   LV     +EP    +  
Sbjct: 119 DMTPEKLWKRLFSSGVIRHGNVPLPIG---RFLP-PPGRKAEALVCACFSAEPWRYTEEL 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++      + EG  I    +      + V  E             E   S LL  +    
Sbjct: 175 LLDLRREAVAEGLRILVRTVMPKEVHLVVPEE-------------ERTISRLLVRDLGDP 221

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF-PANVGLYGCPTTVNNVESIA 215
             + + VHH A  Y    +  LLE + G     RL     P + G       +    ++ 
Sbjct: 222 -GIPVRVHHVARRYPFTSDEMLLELVGG----ARLTWGRLPVDEGF-----VIAEPSTLL 271

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRG 275
            V   +  G                +      V  P  V+  + +   +L+ +    +  
Sbjct: 272 AVRDAVVGGRPVLEQV---------VLVGGDAVQRPVLVKVRLGMPVFDLLSQEGTMLGP 322

Query: 276 GWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWR 335
             D    V  GG       +      +   D +  +G G        +  S         
Sbjct: 323 DADP--RVFLGGPLSGREVSWLGAPLLPGVDVVTLLGRGATGGEEPCIHCSRCAQVCPRG 380

Query: 336 LSVFYKHES----------------CGQCTPCREGTGWMMRVMERLVK 367
           L  +  HE+                C  C  C       + + +R   
Sbjct: 381 LEPWLLHEALGRGDGRLLTGGAIEGCIGCNLCSFVCPSAIPLADRFRD 428


>gi|167947909|ref|ZP_02534983.1| electron transport complex protein RnfC [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 50

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 80  LVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGE 128
           L++N  E EP    D  +M + P  +++G  I  + +GA    I +   
Sbjct: 2   LIINGAECEPYITCDERLMLNFPDKVVDGIRILQYLLGAEECLIGIEDN 50


>gi|330881183|gb|EGH15332.1| NADH dehydrogenase I subunit F [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 46

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 11/27 (40%)

Query: 390 ICALGDAAAWPIQGLIKNFRPLIEERI 416
            CA    A  P+   IK FR   E  I
Sbjct: 1   FCAHAPGAVEPLGSAIKYFRSEFEAGI 27


>gi|255031028|ref|ZP_05302979.1| hypothetical protein LmonL_21257 [Listeria monocytogenes LO28]
          Length = 160

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 34/190 (17%)

Query: 170 YICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYS 229
           Y  G+E  ++  + G+   P      P  VG       V+NV ++  V   ++  A    
Sbjct: 2   YPTGDEQVMVFEVTGRVVPPSG---IPLMVG-----CIVSNVSTMWNVFHAIQDDAPVVR 53

Query: 230 GFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
                     K  +++G V  P  ++  +   F+  +    G     +  L     GG  
Sbjct: 54  ----------KQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFL----DGGPM 99

Query: 290 VPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHES---CG 346
           +  L              + +      T+ +IV + +  + K  ++      +E+   C 
Sbjct: 100 MGKLNDQ---------STIADKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACI 150

Query: 347 QCTPCREGTG 356
           QC+ C +   
Sbjct: 151 QCSLCSDLCP 160


>gi|91773357|ref|YP_566049.1| electron transport complex, RnfABCDGE type, C subunit
           [Methanococcoides burtonii DSM 6242]
 gi|91712372|gb|ABE52299.1| Transport complex rnfC-like protein [Methanococcoides burtonii DSM
           6242]
          Length = 453

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 110/355 (30%), Gaps = 50/355 (14%)

Query: 43  IINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESE-PGTCKDRDIMRHE 101
           +++ +K +G+      G  T      + +    +   +++NA  SE  G   D       
Sbjct: 102 LVDVIKDAGIVEH--YGTPTHK----VLRPEGKQIDTVLINATSSEWIGGHYDTS--AQY 153

Query: 102 PHTLIEGCVIASFAIGAHCAFIYVRG---EFIRERESLQAAVDECYASGLLGSNSKLGYD 158
              +I+   +   A GA    + +R    E I   + L+        + L+G   KL Y 
Sbjct: 154 ASQMIDALKLLMKAAGASKGAVVLRNDDLESINAFDHLRVDGKLLTVAPLMGKR-KLSYY 212

Query: 159 V-----DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVES 213
                 DIIV      Y       L  +L G++         P +VG+      +  V+S
Sbjct: 213 FKDMGSDIIVVSQERIYGQKILDLLTYNLTGRRV---SFCCDPTDVGV-----AICGVKS 264

Query: 214 IAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGI 273
              +   +  G                + S+SG VN P  +   +   F ++I+   G +
Sbjct: 265 AKALYDAVHEG----------RPYIETVVSVSGKVNSPKKILVKIGTPFKDVIDACGGYM 314

Query: 274 RGGWDNLLAVIPGG--SSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK 331
                 +      G       +P  +M  +I      + +                  + 
Sbjct: 315 GDTGKLIANGAVTGVAQYTDDVPVTKMTTSITVLSADEVIRDVSIDCTHCARCVDVCPVD 374

Query: 332 AI-WRLSVFYKHE-----------SCGQCTPCREGTGWMMRVMERLVKGIAQKRE 374
            I  R++ F               +C +C  C       + +++ +         
Sbjct: 375 LIPSRITAFADQGRFDECRQMNILNCVECGRCSAVCPSKIHLLQLIRYAKNSIEN 429


>gi|313125394|ref|YP_004035658.1| respiratory-chain NADH dehydrogenase 51 kd subunit [Halogeometricum
           borinquense DSM 11551]
 gi|312291759|gb|ADQ66219.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit [Halogeometricum
           borinquense DSM 11551]
          Length = 414

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 77/233 (33%), Gaps = 32/233 (13%)

Query: 60  FSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAH 119
           F T  KW  +     D   +L+VN  ESEP    D+ +   + HT     +  +      
Sbjct: 33  FPTYAKWERL-----DEVPFLLVNHQESEPIYYIDKWL--GKSHTADFASLFDALLEETF 85

Query: 120 CAFIYVRGEFIRERES--LQAAVD-ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEET 176
              +    E  R +    L+AA+D   Y +  L  +        I+  +    Y  G E+
Sbjct: 86  EVIVICAKETDRAQWMGELEAALDGTVYTAAQLPIDPADESG--IVFAYTDDRYEYGMES 143

Query: 177 ALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENN 236
            LL  +        L+   P + G       V N E++  V   L  G +          
Sbjct: 144 VLLRLV----ADVVLQNELPMDHGW-----IVQNTETMFNVLHALDEGEAVTQ------- 187

Query: 237 RGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSS 289
              K   + G+V     +   +      L+E   G      D+   +  GG  
Sbjct: 188 ---KYVHVDGNVPRHRFLSAPVGTPATTLLE-AAGRESTELDDGETLADGGPG 236


>gi|325523849|gb|EGD02078.1| NADH dehydrogenase (quinone) [Burkholderia sp. TJI49]
          Length = 48

 Score = 45.8 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 5/31 (16%), Positives = 13/31 (41%)

Query: 382 SKNIEGRTICALGDAAAWPIQGLIKNFRPLI 412
              +   ++CA+G    +P+   + +F    
Sbjct: 1   CDTMLAGSLCAMGGMTPYPVLSALDHFPEDF 31


>gi|301061234|ref|ZP_07202016.1| NADH-quinone oxidoreductase subunit F domain protein [delta
           proteobacterium NaphS2]
 gi|300444553|gb|EFK08536.1| NADH-quinone oxidoreductase subunit F domain protein [delta
           proteobacterium NaphS2]
          Length = 46

 Score = 45.8 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 303 MDYDGLKEMGSG--LGTAAVIVMDRSTDIIKAIWRLSVFYKHESCG 346
           MD+D + ++G G  LGT AV+V D +  ++     L  F+  ESCG
Sbjct: 1   MDFDSMAKIGPGHRLGTGAVMVFDHTCCLVGITLNLIQFFARESCG 46


>gi|289808339|ref|ZP_06538968.1| putative ferredoxin [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 76

 Score = 45.4 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 17/91 (18%)

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           NA E EP    D+ +M  +   L+ G   A  A GA    I ++ ++ R  +    A+  
Sbjct: 2   NAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAID----ALSP 57

Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICG 173
              +G             I +H     Y  G
Sbjct: 58  LLPAG-------------IRLHILPDVYSRG 75


>gi|167947908|ref|ZP_02534982.1| electron transport complex, RnfABCDGE type, C subunit [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 145

 Score = 43.5 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 23/127 (18%)

Query: 167 AGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAS 226
                 G E  L+  L GK+         PA +G+       +NV + A +   +  G  
Sbjct: 5   PTHEPSGGEKQLIRILTGKEV---PSAGLPAQLGI-----ICHNVGTAAAIADAVLTG-- 54

Query: 227 WYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285
                       ++L +++G  V  PC +E  +     ELIE+  G      D    +I 
Sbjct: 55  --------RPLISRLVTVTGEGVAQPCNLEVLIGTPAGELIEQAGG----YTDAASGLIY 102

Query: 286 GGSSVPC 292
           GG  +  
Sbjct: 103 GGPMMGF 109


>gi|224696915|emb|CAX51537.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia sp. HKI 455]
 gi|224696918|emb|CAX51539.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia sp. HKI 402]
 gi|224696927|emb|CAX51545.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia sp. HKI 403]
          Length = 54

 Score = 43.5 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 8  IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVK 48
          I   L G     L D ++RG +  + +ILE+    + +I +VK
Sbjct: 13 ILAGLNGEN-WHLQDYVARGGYQQLRRILEQKIAPEQVIADVK 54


>gi|224696909|emb|CAX51533.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia rhizoxinica
          HKI 454]
 gi|224696912|emb|CAX51535.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia sp. HKI 512]
 gi|224696921|emb|CAX51541.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia
          endofungorum]
 gi|224696924|emb|CAX51543.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia sp. HKI 513]
 gi|224696930|emb|CAX51547.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia sp. HKI 404]
          Length = 54

 Score = 43.5 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 8  IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWIINEVK 48
          I   L G     L D ++RG +  + +ILE+    + +I +VK
Sbjct: 13 ILAGLNGEN-WHLQDYVARGGYQQLRRILEQKIPPEQVIADVK 54


>gi|315186240|gb|EFU20001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Spirochaeta thermophila DSM 6578]
          Length = 440

 Score = 43.1 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 99/349 (28%), Gaps = 57/349 (16%)

Query: 37  EKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRD 96
           +   + +   + +SG+   G      G    F+P     +   LV     +EP    +  
Sbjct: 119 DMTPEKLWKRLFSSGVIRHGNVPLPIG---RFLP-PPGRKAEALVCACFSAEPWRYTEEL 174

Query: 97  IMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGLLGSNSKLG 156
           ++      + EG  I    +      +    E             E   S L   +    
Sbjct: 175 LLGLRREAVAEGLRILVRTVMPKEVHLVFPEE-------------ERTVSRLFVRDLGDP 221

Query: 157 YDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPF-PANVGLYGCPTTVNNVESIA 215
             + + +HH A  Y    +  LLE + G     RL     P + G       +    ++ 
Sbjct: 222 -GIPVRIHHVARRYPFTSDEMLLELVGG----ARLTWGRLPVDEGF-----VIAEPSTLL 271

Query: 216 VVPTILRRGASWYSGFGRENNRGTKLFSISGH-VNYPCTVEESMSITFDELIEKHCGGIR 274
            V   +  G                +  + G  V  P  V+  + +   +L+ +      
Sbjct: 272 AVRDAVVGGRPVLEQ----------VVLVGGDVVERPVLVKVRLGMPVFDLLSQEGTMPG 321

Query: 275 GGWDNLLAVIPGGS---------SVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
              D    V  GG           VP LP   +   +       E      +    V  R
Sbjct: 322 PDVDP--MVFLGGPLSGREVSWLGVPLLPGVDVVTLLGRGATGGEEPCIHCSRCAQVCPR 379

Query: 326 STDII---KAI----WRLSVFYKHESCGQCTPCREGTGWMMRVMERLVK 367
             +     +A+     RL      E C  C  C       + + +R  +
Sbjct: 380 GLEPWLLHEALGRGDERLLSGGAIEGCIGCNLCSFVCPSAIPLADRFRE 428


>gi|222481332|ref|YP_002567568.1| CobN/magnesium chelatase [Halorubrum lacusprofundi ATCC 49239]
 gi|222454708|gb|ACM58971.1| CobN/magnesium chelatase [Halorubrum lacusprofundi ATCC 49239]
          Length = 1304

 Score = 42.7 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 142 ECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGL 201
              ++  +G     G       H    A     E +      G++  PR +  +P  VG+
Sbjct: 887 PARSAWHVGKEVADGVAER---HREEHAARSAAERS-----SGERNDPRDEGKYPEEVGV 938

Query: 202 --YGCPTTVNNVESIAVVPTILRRGASW 227
             +G PT     E+IA V  ++     W
Sbjct: 939 VAWGTPTVRTRGETIAQVLALMGVEPEW 966


>gi|294496342|ref|YP_003542835.1| electron transport complex, RnfABCDGE type, C subunit
           [Methanohalophilus mahii DSM 5219]
 gi|292667341|gb|ADE37190.1| electron transport complex, RnfABCDGE type, C subunit
           [Methanohalophilus mahii DSM 5219]
          Length = 451

 Score = 42.3 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 127/379 (33%), Gaps = 52/379 (13%)

Query: 39  GRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIM 98
           GR+ +I+ +K +G+       + T       P  C      +++NA  SE         +
Sbjct: 98  GREQLISVIKEAGIV----ENYGTPTHLVLNPPDCD--IDTVLINATASEWVGHNYETPL 151

Query: 99  RHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ---AAVDECYASGLLGSNSKL 155
            +    +++   +   A GA    I +R +     ++             + L+G   ++
Sbjct: 152 EYAS-EMLDSLRLLMKAAGASRGAIVLRNDDEDSIDAFDGLDYEGKTIMVAPLIGKR-RV 209

Query: 156 GYDV-----DIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNN 210
           GY       DIIV      Y          ++ G+K   R     PA+VG+      +  
Sbjct: 210 GYYFNDQDTDIIVVSQDKIYGKNIFEYFTYNVTGRKVPFR---CTPASVGV-----AICG 261

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270
           V+S   +  ++  G  +             + ++SG VN P  +   +  +F ++IE  C
Sbjct: 262 VKSAKALNDLVNTGMPYI----------ETVVTVSGQVNNPQRLLVKIGTSFKDVIE-AC 310

Query: 271 GGIRGGWDNLLA--VIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRST- 327
           G  RG    L++  VI G +              +      E+   +    +        
Sbjct: 311 GDYRGEPAKLISNGVITGVAQYDEEVPVTKMTTSIIVQDKDEVLKDISKDCIHCARCVDV 370

Query: 328 DIIKAIWRLSVFYKH------------ESCGQCTPCREGTGWMMRVMERLV--KGIAQKR 373
             +  I        +            E+C +C  C       + VM+ +   K    + 
Sbjct: 371 CPVDLIPNRIAALSNQGRFDECRQMHIENCIECGRCSSVCPSKIHVMQLIQYSKEAIARA 430

Query: 374 EIDLLYEVSKNIEGRTICA 392
           + D   + S NI+    C 
Sbjct: 431 DEDFSEKESSNIKLGCSCG 449


>gi|116747659|ref|YP_844346.1| hypothetical protein Sfum_0210 [Syntrophobacter fumaroxidans MPOB]
 gi|116696723|gb|ABK15911.1| hypothetical protein Sfum_0210 [Syntrophobacter fumaroxidans MPOB]
          Length = 483

 Score = 42.3 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/113 (10%), Positives = 37/113 (32%), Gaps = 13/113 (11%)

Query: 317 TAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREID 376
           +  ++ +D    ++      +   +  S  +          +   + R+  GI  + +++
Sbjct: 156 SGMLVGIDEHVCMVDVARCFAD-MEGASAAKSPAVAAVMVRIQEKVRRISGGIGTRADLE 214

Query: 377 LLYEVSKNIE-----GRTICALGDAAAWPIQGLIKNFRPLIEERIDQYHRCNF 424
            L  +   +        T   LG      +   + +F+    + ++Q   C  
Sbjct: 215 ALRAILDELRLEVKADPT--ELGSG----LLSAVSHFQDEFRQHVEQGG-CPL 260


>gi|303325997|ref|ZP_07356440.1| putative electron transport complex protein RnfC [Desulfovibrio sp.
           3_1_syn3]
 gi|302863913|gb|EFL86844.1| putative electron transport complex protein RnfC [Desulfovibrio sp.
           3_1_syn3]
          Length = 426

 Score = 42.3 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 92/324 (28%), Gaps = 73/324 (22%)

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQ 137
             L++N    +PG      ++      L  G  +      A    + V  E         
Sbjct: 138 KTLIINGLNPDPGVTWAEPMLLTHLDNLKAGLEVLRRLSPAEKILLAVPKEMRL------ 191

Query: 138 AAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
                              +  DI V      Y       +++++ GK+         P 
Sbjct: 192 -------------------HHHDIEVAPVPSQYPASINALVIKAVTGKEN--------PE 224

Query: 198 NVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEES 257
            VG+ G    ++NV S+  V    R G                     G   +       
Sbjct: 225 GVGIVG----LHNVWSLGRVA---RTGLPLIETVVT-----------IGSFEHSGNYIVK 266

Query: 258 MSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSG--- 314
              T  EL+E     ++ G   +      G S+  L     +G+   +  + E G+    
Sbjct: 267 EGSTIGELLEFANIELKNGDTLVRGGPLRGESLDKLDRSVTKGSTGVF--VVEAGTIPPM 324

Query: 315 ------LGTAAVIVMDRSTDIIKAIWRLSVFYKH--------ESCGQCTPCREGTGWMMR 360
                 +   A  ++  +      + R + F  H        E C +C  C         
Sbjct: 325 EGHSPCINCGACTLICPARLSPGFLSRYAEFALHERNRAERIECCLECGLCGYVCIARRP 384

Query: 361 VME--RLVKGIAQKRE-IDLLYEV 381
           V++  RL K    + +    L E+
Sbjct: 385 VLQYIRLSKHKLAQADAAAKLQEL 408


>gi|289449502|ref|YP_003475118.1| comEA protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184049|gb|ADC90474.1| comEA protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 301

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 18/46 (39%)

Query: 226 SWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
             Y     ++N+GT    ISG V  P   +        ELI+   G
Sbjct: 90  DLYGKKDLKSNQGTFPVCISGAVKKPGVYQVHAGAYLQELIDLAGG 135


>gi|258404661|ref|YP_003197403.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfohalobium retbaense DSM 5692]
 gi|257796888|gb|ACV67825.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfohalobium retbaense DSM 5692]
          Length = 427

 Score = 41.5 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 98/365 (26%), Gaps = 60/365 (16%)

Query: 23  SMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVV 82
           +++RG  ++   ++    D        +G+   G +     +    M          L++
Sbjct: 95  AIARGEAES-SPVVPLEGDAPSELAAKAGIVDSGRS--PEPLSTKLMRAKEKGCS-TLLI 150

Query: 83  NADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDE 142
           N  E E      R +MR  P  + +G  +   AIGA    + V        + +  A + 
Sbjct: 151 NGVEWEAVLSSKRSLMRAFPEEIAQGIGVLKDAIGAETVMLAVSTGAEAAAKGVAEAGEG 210

Query: 143 CYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLY 202
                             I V      +    +  L++ L GK+     K     ++G+ 
Sbjct: 211 ------------------IEVTPLPQKHPQSLDELLVKGLWGKEIPAGRK---ADDLGI- 248

Query: 203 GCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITF 262
                V ++E+       +    +    +      GT        V     V   +    
Sbjct: 249 ----LVLDLETALHTKRAVVDKQACQYRYIT--VTGT-------AVPETTNVAVPLGTPV 295

Query: 263 DELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVI- 321
            E++                 + G    P LP   M                +G  A+  
Sbjct: 296 REVLR---FCKIDPTRVAKIAVGGPLMGPPLPDLDMPVTWETNGLYVLDRDHVGGGALPE 352

Query: 322 -VMDRSTDIIKAIWRLSVFY----------------KHESCGQCTPCREGTGWMMRVMER 364
                   +      L  F                    SC +C  C       + +++ 
Sbjct: 353 DCFKCGACVRVCPMNLMPFLIAGFSQADSFDLAENNSILSCVECGCCAYVCPAQIPMVQW 412

Query: 365 LVKGI 369
           +  G 
Sbjct: 413 IQLGK 417


>gi|319790065|ref|YP_004151698.1| polysaccharide export protein [Thermovibrio ammonificans HB-1]
 gi|317114567|gb|ADU97057.1| polysaccharide export protein [Thermovibrio ammonificans HB-1]
          Length = 977

 Score = 40.8 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 240 KLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIP 285
           K+  + G V  P   E     T  +LI+   G +   +   + +  
Sbjct: 326 KVAGVGGRVKRPAIYELKGGETLKDLIQMAGGVLPSSYRYKVTIQR 371


>gi|213966177|ref|ZP_03394363.1| DNA-binding protein [Corynebacterium amycolatum SK46]
 gi|213951192|gb|EEB62588.1| DNA-binding protein [Corynebacterium amycolatum SK46]
          Length = 265

 Score = 40.4 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 207 TVNNVESIAVVPTILRRGASWYSGFGRENNR----GTKLFSISGHVNYPCTVEESMSITF 262
            V +       P      A    G G+E N     G  + S+ G V  P  VE       
Sbjct: 76  AVQDAAVAGSTPETTETPAEMRGGPGQETNPQAQAGPLIVSVVGLVVNPGVVEVPAGARV 135

Query: 263 DELIEKHCGGIRGGWD 278
            E I++  G +     
Sbjct: 136 VEAIDRAGGLLPEANP 151


>gi|330469616|ref|YP_004407359.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Verrucosispora maris AB-18-032]
 gi|328812587|gb|AEB46759.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Verrucosispora maris AB-18-032]
          Length = 252

 Score = 40.4 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 190 RLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVN 249
           R +P       + G PTTV                 +     G +   G  + +++G V 
Sbjct: 71  RSRPQVEPVSAVTGAPTTV-----------PSGNRGNEPGDEGADGATGEVVVAVAGKVR 119

Query: 250 YPCTVEESMSITFDELIEKHCGGIR 274
            P  V         + +E   G + 
Sbjct: 120 RPGLVRLPAGARVADAVEAAGGALP 144


>gi|307697977|gb|ADN86356.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia rhizoxinica]
 gi|307697980|gb|ADN86358.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia rhizoxinica]
 gi|307697983|gb|ADN86360.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia rhizoxinica]
 gi|307697986|gb|ADN86362.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia rhizoxinica]
 gi|307697989|gb|ADN86364.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia rhizoxinica]
 gi|307697992|gb|ADN86366.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia rhizoxinica]
 gi|307697995|gb|ADN86368.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia rhizoxinica]
          Length = 50

 Score = 40.0 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 8  IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWII 44
          I   L G     L D ++RG +  + +ILE+    + +I
Sbjct: 13 ILAGLNGEN-WHLQDYVARGGYQQLRRILEQKIPPEQVI 50


>gi|254818732|ref|ZP_05223733.1| alcohol dehydrogenase B [Mycobacterium intracellulare ATCC 13950]
          Length = 376

 Score = 39.6 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 48/137 (35%), Gaps = 6/137 (4%)

Query: 265 LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
           +I++   G     +  + +   G    C     +            +G   G   +  + 
Sbjct: 16  VIDEIEIGDPRPGEVTVQLETAGL---CHSDHHLLTGDFPIPCFPVLGGHEGAGIITEVG 72

Query: 325 RSTDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKN 384
              + +     + + +   SCG+CTPC+ G   +  +   L+ G +       +    ++
Sbjct: 73  DGVEHLAVGDHVVMSFIP-SCGKCTPCQTGLRNLCDLGMGLLSGQSVFDGSFRVTARGRD 131

Query: 385 IEGRTICALGDAAAWPI 401
           +   ++  LG  A + +
Sbjct: 132 VIPMSL--LGTFAPYAV 146


>gi|307697998|gb|ADN86370.1| NADH-ubiquinone oxidoreductase chain F [Burkholderia
          endofungorum]
          Length = 50

 Score = 39.6 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 8  IFTNLYGLQGKSLSDSMSRGHWDNVDKILEKG--RDWII 44
          I   L G     L D ++RG +  + +ILE+    + +I
Sbjct: 13 ILAGLNGEN-WHLQDYVARGGYQQLRRILEQKIAPEQVI 50


>gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score = 39.6 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 12/191 (6%)

Query: 23  SMSRGHWDNVDKILEKGRDWIINEVKASGLRG-----RGGAGFSTGMKWSFMPKVCSDRP 77
            ++   +  +DKI E+  D ++ ++   G+ G     R        +         +DR 
Sbjct: 31  YIAHDGYQALDKIREQKPDIVVLDLMLPGIDGWEVCRRARKIGDIPILMLTARDEEADRL 90

Query: 78  HYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRER---E 134
             L + AD+        R+++      L     IA+         + +  E        E
Sbjct: 91  IGLEMGADDYVTKPFSAREVVARVRAILRRSHKIAAQPEPIKVGNLLIDAERHVIIKDDE 150

Query: 135 SLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKK----GQPR 190
            L     E     LL +N    +    ++    G    G E  +   ++  +      P+
Sbjct: 151 ILDMTPTEFKILQLLATNKGRVFSRLQLIEQVQGYASEGYERTIDVHIKNIRRKIENNPK 210

Query: 191 LKPPFPANVGL 201
                    G+
Sbjct: 211 EPKYIITVYGV 221


>gi|14521639|ref|NP_127115.1| cell division control protein [Pyrococcus abyssi GE5]
 gi|5458858|emb|CAB50345.1| MCM inteins containing helicase, minichromosome maintenance protein
           [Pyrococcus abyssi GE5]
          Length = 1112

 Score = 39.6 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 89  PGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAVDECYASGL 148
           P T  D   +R + H L+ G    +  +      +   GE  +  E ++ A++E   +G 
Sbjct: 309 PRTLPDGTRLRGDIHVLLVGDPGVAKCVDYETEVVLGNGERKKIGEIVERAIEEAEKNGK 368

Query: 149 LGS-NSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPA 197
           LG  +      +DI V+              LE+L+ +K +  +     A
Sbjct: 369 LGRVDDGFYAPIDIEVYSLD-----------LETLKVRKARANIAWKRTA 407


>gi|92112677|ref|YP_572605.1| arginine decarboxylase [Chromohalobacter salexigens DSM 3043]
 gi|91795767|gb|ABE57906.1| arginine decarboxylase [Chromohalobacter salexigens DSM 3043]
          Length = 633

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTG- 63
            DR+   L G    ++ D    G +  V  I    +  ++ E+ A+  RG G  G   G 
Sbjct: 71  HDRV-ERLCGAFDSAMHDEAYHGGYTAVYPIKVNQQRRVVEEILATQARGHGRVGLEAGS 129

Query: 64  -MKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMR 99
             +   +  +  D P  +V N         KDR+ +R
Sbjct: 130 KPELLAVLALSGDGPSLIVCNG-------YKDREYVR 159


>gi|312140263|ref|YP_004007599.1| zinc binding alcohol dehydrogenase [Rhodococcus equi 103S]
 gi|325676990|ref|ZP_08156661.1| alcohol dehydrogenase B [Rhodococcus equi ATCC 33707]
 gi|311889602|emb|CBH48919.1| zinc binding alcohol dehydrogenase [Rhodococcus equi 103S]
 gi|325552152|gb|EGD21843.1| alcohol dehydrogenase B [Rhodococcus equi ATCC 33707]
          Length = 375

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 266 IEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDR 325
           IE+   G     +  + +   G    C     +            MG   G+  +  +  
Sbjct: 17  IEEIELGDPVAGEVQIRMEAAGM---CHSDHHIVTGATPMPSYPAMGGHEGSGVITKVGE 73

Query: 326 STDIIKAIWRLSVFYKHESCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNI 385
               ++    + + +    CG+C  C EG   +  +   L+ G A       +    +N+
Sbjct: 74  GVTGVEVGDHVVLSFIPA-CGRCPSCSEGHSNLCDLGMGLLSGQAISDGTYRIQARGQNV 132

Query: 386 EGRTICALGDAAAW 399
                C LG  A +
Sbjct: 133 IPM--CLLGTFAPY 144


>gi|153876997|ref|ZP_02004031.1| NADH dehydrogenase I ubiquinone reductase; F subunit 51 kDa
          [Beggiatoa sp. PS]
 gi|152066539|gb|EDN65969.1| NADH dehydrogenase I ubiquinone reductase; F subunit 51 kDa
          [Beggiatoa sp. PS]
          Length = 46

 Score = 39.2 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 9  FTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRD 41
          F N++     +L    S G +  + KIL +   
Sbjct: 7  FKNIHLDNSWTLPVYESTGGYKALRKILTEKTP 39


>gi|219110295|ref|XP_002176899.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411434|gb|EEC51362.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 402

 Score = 38.8 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 344 SCGQCTPCREGTGWMMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC 391
           SC QC PCR       R ++   +   Q   +DLL + S   +  + C
Sbjct: 291 SCLQCEPCRI--FENQRALDDHTQAKHQAVHLDLLPDWSNITKDTSTC 336


>gi|289524594|ref|ZP_06441448.1| PduS protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502165|gb|EFD23329.1| PduS protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 103

 Score = 38.8 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 38  KGRDWIINEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGTCKDRDI 97
             +D +I  V+ +G+ G GGAGF T +K        SD   YLV N  E EP    D+ +
Sbjct: 1   MTKDELIELVRYAGVVGAGGAGFPTHVKL-----QASDIDTYLV-NGAECEPLLYVDQAL 54

Query: 98  MRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAA 139
           M++    L+    I S  +     F  V+ +      +L+AA
Sbjct: 55  MQNWNSFLVSTSEILSSTLKCKVIF-GVKIKHGDSINALKAA 95


>gi|84623995|ref|YP_451367.1| phosphate regulon transcriptional regulator [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166711533|ref|ZP_02242740.1| phosphate regulon transcriptional regulator [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188576302|ref|YP_001913231.1| phosphate transport system regulatory protein PhoU [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|84367935|dbj|BAE69093.1| phosphate regulon transcriptional regulator [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188520754|gb|ACD58699.1| phosphate transport system regulatory protein PhoU [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 236

 Score = 38.8 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 14/67 (20%)

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC--------------ALGDAAAWPIQG 403
           M R +  ++ G+    +I+ + + + N+  R+I               ALG  AA  ++ 
Sbjct: 80  MARDLREILAGLRIPADIERIGDYAANVAKRSIALNSAPPLPQTVGLRALGQMAATAVRD 139

Query: 404 LIKNFRP 410
            ++ +R 
Sbjct: 140 AVQAYRD 146


>gi|315504208|ref|YP_004083095.1| soluble ligand binding domain protein [Micromonospora sp. L5]
 gi|315410827|gb|ADU08944.1| Soluble ligand binding domain protein [Micromonospora sp. L5]
          Length = 193

 Score = 38.8 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 17/57 (29%)

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
             +     +         + G  + +++G V  P  V         + IE   G + 
Sbjct: 26  APVSATTGAVPGAPMSAGSPGQVVVALAGKVRRPGLVRLPAGARVADAIEAAGGALP 82


>gi|218200227|gb|EEC82654.1| hypothetical protein OsI_27267 [Oryza sativa Indica Group]
 gi|222637649|gb|EEE67781.1| hypothetical protein OsJ_25510 [Oryza sativa Japonica Group]
          Length = 1797

 Score = 38.8 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 55/211 (26%), Gaps = 26/211 (12%)

Query: 205  PTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDE 264
            P  +   ++I   P    R              G +L  +   ++    +E       + 
Sbjct: 1564 PAAIVATKAILSDPRAEPRYGERVPYVVIHGEPGARLVDMV--IDPYGLLEVGSPYRLNA 1621

Query: 265  LIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMD 324
            L                     G     L            + L +  S  G  +   + 
Sbjct: 1622 LYY------ITKQIIPALQRVFGLVGADLNKWFNEMPRPIRETLAKRQSASGHGSFSRLG 1675

Query: 325  RSTDIIKAIWRLSVFYKHESCGQCTPCREGTG-------WMMRVMERLVKGIAQ--KREI 375
             +   +    R+  +Y    C  C    +G+            V+  +V G     +REI
Sbjct: 1676 LNKKGVGKGSRIDTYYMSSHCIICGEIIQGSDTFCNNCLRNEAVVGTIVAGRTSKLEREI 1735

Query: 376  DLLYEVSKNIEGRTICALGDAAAWPIQGLIK 406
              L           IC     A W ++  IK
Sbjct: 1736 QHL---------AAICGHCGGADWIVESGIK 1757


>gi|289663087|ref|ZP_06484668.1| phosphate transport system regulatory protein PhoU [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289670067|ref|ZP_06491142.1| phosphate transport system regulatory protein PhoU [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 236

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 14/67 (20%)

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC--------------ALGDAAAWPIQG 403
           M R +  ++ G+    +I+ + + + N+  R+I               ALG  AA  ++ 
Sbjct: 80  MARDLREILAGLRIPADIERIGDYAANVAKRSIALNSAPPLPQTVGLRALGQMAATAVRD 139

Query: 404 LIKNFRP 410
            ++ +R 
Sbjct: 140 AVQAYRD 146


>gi|257059394|ref|YP_003137282.1| polysaccharide export protein [Cyanothece sp. PCC 8802]
 gi|256589560|gb|ACV00447.1| polysaccharide export protein [Cyanothece sp. PCC 8802]
          Length = 495

 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  T   ++ G V  P  VE   +I  ++ I    G
Sbjct: 372 SPATIRVNVVGEVRRPGLVEVPPNIPLNQAILAAGG 407


>gi|218246348|ref|YP_002371719.1| polysaccharide export protein [Cyanothece sp. PCC 8801]
 gi|218166826|gb|ACK65563.1| polysaccharide export protein [Cyanothece sp. PCC 8801]
          Length = 495

 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 236 NRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
           +  T   ++ G V  P  VE   +I  ++ I    G
Sbjct: 372 SPATIRVNVVGEVRRPGLVEVPPNIPLNQAILAAGG 407


>gi|260893333|ref|YP_003239430.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Ammonifex degensii KC4]
 gi|260865474|gb|ACX52580.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Ammonifex degensii KC4]
          Length = 194

 Score = 38.4 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 17/51 (33%)

Query: 234 ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVI 284
           E  RGT    ++G V++P   E        + +EK           L    
Sbjct: 45  EKIRGTVWVHVAGEVSHPGVYELPAGSRVKDALEKAGLLPTADPHALNLAQ 95


>gi|145595981|ref|YP_001160278.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Salinispora tropica CNB-440]
 gi|145305318|gb|ABP55900.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Salinispora tropica CNB-440]
          Length = 280

 Score = 38.4 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 211 VESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHC 270
           +E +A V  +   G       G     G  + +++G V  P  V         + ++   
Sbjct: 110 IEPVAPVAEVTPVGPPA--SVGPTEAGGELVVAVAGKVRRPGLVRVPAGARVADAVQAAG 167

Query: 271 GGIR 274
           G + 
Sbjct: 168 GALP 171


>gi|58582089|ref|YP_201105.1| phosphate regulon transcriptional regulator [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58426683|gb|AAW75720.1| phosphate regulon transcriptional regulator [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 258

 Score = 38.4 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 14/67 (20%)

Query: 358 MMRVMERLVKGIAQKREIDLLYEVSKNIEGRTIC--------------ALGDAAAWPIQG 403
           M R +  ++ G+    +I+ + + + N+  R+I               ALG  AA  ++ 
Sbjct: 102 MARDLREILAGLRIPADIERIGDYAANVAKRSIALNSAPPLPQTVGLRALGQMAATAVRD 161

Query: 404 LIKNFRP 410
            ++ +R 
Sbjct: 162 AVQAYRD 168


>gi|302869317|ref|YP_003837954.1| Soluble ligand binding domain [Micromonospora aurantiaca ATCC
           27029]
 gi|302572176|gb|ADL48378.1| Soluble ligand binding domain [Micromonospora aurantiaca ATCC
           27029]
          Length = 192

 Score = 38.4 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/57 (14%), Positives = 17/57 (29%)

Query: 218 PTILRRGASWYSGFGRENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCGGIR 274
             +     +         + G  + +++G V  P  V         + IE   G + 
Sbjct: 25  APVSATTGAVPGAPMSAGSPGQVVVALAGKVRRPGLVRLPAGARVADAIEAAGGALP 81


>gi|218134295|ref|ZP_03463099.1| hypothetical protein BACPEC_02188 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991670|gb|EEC57676.1| hypothetical protein BACPEC_02188 [Bacteroides pectinophilus ATCC
           43243]
          Length = 213

 Score = 37.7 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 24/73 (32%)

Query: 244 ISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRGAIM 303
           + G VN P   E        ELI    G     +   +++    +    L    +  A  
Sbjct: 69  VCGSVNEPGVYEVREGSRVHELIALAGGFAEDAYTLSVSMAKTVTDGQTLYVPHLDEAED 128

Query: 304 DYDGLKEMGSGLG 316
           D  G +  GS  G
Sbjct: 129 DVAGSRLSGSVTG 141


>gi|148240725|ref|YP_001226112.1| arginine decarboxylase [Synechococcus sp. WH 7803]
 gi|147849264|emb|CAK24815.1| Arginine decarboxylase [Synechococcus sp. WH 7803]
          Length = 636

 Score = 37.7 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 20/151 (13%)

Query: 5   QDRIFTNLYGLQGKSLSDSMSRGHWDNVDKILEKGRDWIINEVKASGLRGRGGAGFSTGM 64
           +DR    L+    ++++     G +  V  +    +  ++  +  SG R   G    +  
Sbjct: 76  EDR-LERLHAAFDRAIAHYGYAGRYQGVFPVKCNQQRHVVERIVESGQRWHFGLEAGSKA 134

Query: 65  KWSFMPKVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIY 124
           +      + +D    L+ N         KD+  +           ++A          I 
Sbjct: 135 ELLIALSLLNDPDALLICNG-------YKDQRYLE--------TAILARKLGRQPVVVI- 178

Query: 125 VRGEFIRERESLQAAVDECYASGLLGSNSKL 155
              E   E E +  A D   A+ ++G  ++L
Sbjct: 179 ---EQPDEVERIIRASDHLGAAPMIGIRARL 206


>gi|88802221|ref|ZP_01117748.1| putative capsule polysaccharide export protein [Polaribacter
           irgensii 23-P]
 gi|88781079|gb|EAR12257.1| putative capsule polysaccharide export protein [Polaribacter
           irgensii 23-P]
          Length = 806

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAV 283
           L S+ G V  P   E     T  +L++   G     + +LL +
Sbjct: 317 LVSVEGAVKRPGLYELKEGQTLFDLVKYFGGFTPKAYTSLLVI 359


>gi|127512330|ref|YP_001093527.1| polysaccharide export protein [Shewanella loihica PV-4]
 gi|126637625|gb|ABO23268.1| polysaccharide export protein [Shewanella loihica PV-4]
          Length = 920

 Score = 37.3 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 234 ENNRGTKLFSISGHVNYPCTVEESMSITFDELIEKHCG 271
            +++GT++ +ISG V +P     S      +L+    G
Sbjct: 583 NSDKGTQVVAISGKVRHPGVYPLSQGAKVKDLVIAAGG 620


>gi|237756477|ref|ZP_04585011.1| polysaccharide biosynthesis protein [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691365|gb|EEP60439.1| polysaccharide biosynthesis protein [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 838

 Score = 37.3 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 30/89 (33%)

Query: 241 LFSISGHVNYPCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPGGSSVPCLPAGQMRG 300
           + +I+G V  P   E     + DE++E   G      +  + ++        +  G +  
Sbjct: 311 VVAIAGEVKRPAIYELKNENSLDEILEFAGGINPSSSEVFVRLMRYSKDGIVIKEGALND 370

Query: 301 AIMDYDGLKEMGSGLGTAAVIVMDRSTDI 329
                  L+     L      V++   D+
Sbjct: 371 KTFLKTRLENGDFVLVGKNPGVLENGVDL 399


>gi|167838233|ref|ZP_02465092.1| hypothetical protein Bpse38_17126 [Burkholderia thailandensis
           MSMB43]
          Length = 269

 Score = 37.3 bits (85), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 13/109 (11%)

Query: 33  DKILEKGRDWI-INEVKASGLRGRGGAGFSTGMKWSFMPKVCSDRPHYLVVNADESEPGT 91
            ++L K  +   I+ ++ S L           ++W    +  ++   Y + N  +S    
Sbjct: 141 ARLLAKLPEAAPISVLRISRL----------ALEWQEAKQTNAE-LRYWICNTFKSGHYA 189

Query: 92  CKDRDIMRHEPHTLIEGCVIASFAIG-AHCAFIYVRGEFIRERESLQAA 139
             D  ++ H P             +  A    ++V       R    AA
Sbjct: 190 DIDALVLEHAPDEWGPAARTVGAVMAFADHGHLFVGDVIAFWRCRELAA 238


>gi|209963991|ref|YP_002296906.1| polysaccharide biosynthesis [Rhodospirillum centenum SW]
 gi|209957457|gb|ACI98093.1| polysaccharide biosynthesis [Rhodospirillum centenum SW]
          Length = 975

 Score = 36.9 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 242 FSISGHVNYPCTVEESMSIT---FDELIEKHCGGIRGGWDNLLAVIPGGSSV 290
            +++G V  P   E          + L++   G +R G +  L +  G    
Sbjct: 226 VAVAGAVKRPGIYELPPGEPRLSLESLLDLAGGPLRPGPERALRLSFGHDGA 277


>gi|114047525|ref|YP_738075.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
 gi|113888967|gb|ABI43018.1| ATP-dependent DNA helicase, RecQ family [Shewanella sp. MR-7]
          Length = 665

 Score = 36.9 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 14/141 (9%)

Query: 292 CLPAGQMRGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIK--AIWRLSVFYKHESCGQCT 349
            L  G +   +  Y   KE       A ++     T  +              +SCG C+
Sbjct: 513 VLAQGHLADELHQYFTDKEAKEVARIAQLVRFFELTTCLNYNLARYFDDNAAPQSCGHCS 572

Query: 350 PCREGTGWMMRVME-RLVKGIAQKREIDLLYEVSKNIEGRTI-----CALGDAAAWPIQG 403
            CR     +    E +       K ++  L  ++++    ++     C        P+  
Sbjct: 573 VCRGQMAKLAYSEEPKWPDDAQLKADLHELERLAESKGLASLSLDTQCRFLAGMTLPLFT 632

Query: 404 LIKNFRPLIEERIDQYHRCNF 424
            ++        ++  Y RC +
Sbjct: 633 RLQ------VRKLSGYGRCEY 647


>gi|212703942|ref|ZP_03312070.1| hypothetical protein DESPIG_01995 [Desulfovibrio piger ATCC 29098]
 gi|212672645|gb|EEB33128.1| hypothetical protein DESPIG_01995 [Desulfovibrio piger ATCC 29098]
          Length = 423

 Score = 36.5 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 87/331 (26%), Gaps = 76/331 (22%)

Query: 71  KVCSDRPHYLVVNADESEPGTCKDRDIMRHEPHTLIEGCVIASFAIGAHCAFIYVRGEFI 130
           K    +   L++N    +PG      ++     TL  G  +      A    + V  E  
Sbjct: 129 KSLGQQCETLIINGLNPDPGVTWAEPMLLTHQGTLRAGLSVLRRLSPAKRILLAVPREMH 188

Query: 131 RERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEETALLESLEGKKGQPR 190
                                   L +D D+ V      Y       L++S+ GK+    
Sbjct: 189 ------------------------LHFD-DVEVVRVTARYPASVNALLVKSVTGKEN--- 220

Query: 191 LKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWYSGFGRENNRGTKLFSISGHVNY 250
                P  VG+ G    ++NV S+  V    R G           +             +
Sbjct: 221 -----PEGVGVVG----LHNVWSLGRVA---RTGLPLIESVITLGSY-----------TH 257

Query: 251 PCTVEESMSITFDELIEKH------------CGGIRGGWDNLLAVIPGGSSVPCLPAGQM 298
                        EL+E               G +RG   + L       +         
Sbjct: 258 SGNYIVKEGSMLGELLEFAHIKLNSGDTLVRGGPLRGESIDRLDRSITKGATGVFVVEAG 317

Query: 299 RGAIMDYDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHE--------SCGQCTP 350
               M+          +   A +++  +      + R + F  HE         C +C  
Sbjct: 318 TVPPMEGHS-----PCINCGACVLICPARLSPSMLSRNAEFALHERCRDEHVDCCLECGL 372

Query: 351 CREGTGWMMRVMERLVKGIAQKREIDLLYEV 381
           C         V++ +     +  + D    +
Sbjct: 373 CGYVCIARRPVLQYIRLAKHKLAQADEARRL 403


>gi|296165179|ref|ZP_06847726.1| probable transcriptional regulator [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295899368|gb|EFG78827.1| probable transcriptional regulator [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 263

 Score = 36.5 bits (83), Expect = 9.0,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 52/168 (30%), Gaps = 18/168 (10%)

Query: 127 GEFIRERESLQAAVDECYASGLLGSNSKLGYDVDIIVHHGAGAYICGEET--ALLESLEG 184
            E      + Q A+ +  A+G+      +G  V I    G       EE    LL +++ 
Sbjct: 105 WESPELITATQGALLKLRAAGVDVDPVDIGAPVAIASPPGVPGLRGSEEVLGILLSAIDS 164

Query: 185 KKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGASWY---SGFGRENNRGTKL 241
           ++       P  A       P +   VE   VV    R    WY       R+  R  +L
Sbjct: 165 RQAVQFPHRPSRAE------PYSTRTVEPWGVVTQKGR----WYLVGHDRDRDATRTFRL 214

Query: 242 FSISGHVNY---PCTVEESMSITFDELIEKHCGGIRGGWDNLLAVIPG 286
             I   V     P  V     +    ++ +       G    + V  G
Sbjct: 215 SRIGAEVRRIGPPGAVAVPEGVDLRRIVARTIAETPTGARARVWVADG 262


>gi|254446396|ref|ZP_05059872.1| hypothetical protein VDG1235_4646 [Verrucomicrobiae bacterium
           DG1235]
 gi|198260704|gb|EDY85012.1| hypothetical protein VDG1235_4646 [Verrucomicrobiae bacterium
           DG1235]
          Length = 228

 Score = 36.1 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 6/109 (5%)

Query: 104 TLIEGCVIASFAIGAHCAFIYVRGEFIRERESLQAAV------DECYASGLLGSNSKLGY 157
           ++  G +      G     +Y+RG      +    A+      +   +     + + LG+
Sbjct: 66  SVTAGLLAPVDPAGYRRGQVYIRGSMQVTVKREAVALYMEPLLELRSSEKPAPARAVLGH 125

Query: 158 DVDIIVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPT 206
              + +H      +  E  A +  +   +   R +   PANVG    PT
Sbjct: 126 FFFVFIHLCMDRQVPDESRARIRRISPDRNPSRSENRLPANVGRSQRPT 174


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.140    0.404 

Lambda     K      H
   0.267   0.0428    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,133,382,278
Number of Sequences: 14124377
Number of extensions: 349103482
Number of successful extensions: 903363
Number of sequences better than 10.0: 3520
Number of HSP's better than 10.0 without gapping: 5756
Number of HSP's successfully gapped in prelim test: 895
Number of HSP's that attempted gapping in prelim test: 878809
Number of HSP's gapped (non-prelim): 7135
length of query: 425
length of database: 4,842,793,630
effective HSP length: 142
effective length of query: 283
effective length of database: 2,837,132,096
effective search space: 802908383168
effective search space used: 802908383168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 83 (36.5 bits)